BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780760|ref|YP_003065173.1| hypothetical protein
CLIBASIA_03235 [Candidatus Liberibacter asiaticus str. psy62]
         (330 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040437|gb|ACT57233.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 330

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL
Sbjct: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP
Sbjct: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI
Sbjct: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA
Sbjct: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS
Sbjct: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300

Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330
           SIPNHGLGIAINNRLERAAAPRNQSQRIVP
Sbjct: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330


>gi|315121975|ref|YP_004062464.1| hypothetical protein CKC_01125 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495377|gb|ADR51976.1| hypothetical protein CKC_01125 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 320

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/319 (78%), Positives = 285/319 (89%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSITDS+ L++ACEFLDAGLPI IPTETVYGLAV++R+P+AIRRLYEIK+RP  NPLICH
Sbjct: 1   MSITDSDVLQQACEFLDAGLPIVIPTETVYGLAVNARDPSAIRRLYEIKQRPPTNPLICH 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           VS+ISMVKK+A +D LSLHL+KLFWPGPLTLVLDLLS  DIHPL+ +NL TACFRVP GF
Sbjct: 61  VSNISMVKKYAHIDDLSLHLSKLFWPGPLTLVLDLLSENDIHPLAISNLNTACFRVPRGF 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            KKLI+TYG+PLAIPSAN SGQIS TN++HILSS ICK+IPL IDGGISKIGLESTIVNV
Sbjct: 121 AKKLIDTYGYPLAIPSANISGQISTTNIQHILSSPICKQIPLAIDGGISKIGLESTIVNV 180

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + ++ + ILRPGGLEI+ +++AI  ++EY   ET+TP SPG L+SHYAPRSQVRLRA H+
Sbjct: 181 KHDQTIHILRPGGLEIDKIEKAIGGKIEYSTSETATPLSPGRLQSHYAPRSQVRLRATHI 240

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
           NP EALIRF N PIKN +NAIISLNLSK+GKLKEAAFNLFNYMKIADDSGA SIAFS IP
Sbjct: 241 NPGEALIRFANFPIKNSKNAIISLNLSKSGKLKEAAFNLFNYMKIADDSGAISIAFSPIP 300

Query: 304 NHGLGIAINNRLERAAAPR 322
           NHGLGIAINNRLERAAAPR
Sbjct: 301 NHGLGIAINNRLERAAAPR 319


>gi|159184438|ref|NP_353749.2| hypothetical protein Atu0724 [Agrobacterium tumefaciens str. C58]
 gi|159139751|gb|AAK86534.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 325

 Score =  337 bits (863), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/314 (53%), Positives = 217/314 (69%), Gaps = 1/314 (0%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL+ +   L  G PIA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH++DI+M
Sbjct: 13  TALQASVAELADGRPIALPTETVYGLAADATNPAAITRIYETKGRPQFNPLICHMADIAM 72

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            +++A  DP+S  LA+ FWPGPLTLVL L   +DIH L+TA L T   RVP GF   LI 
Sbjct: 73  AERYAVFDPISRKLAEAFWPGPLTLVLPLKPESDIHSLATAGLDTVGIRVPQGFASDLIR 132

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G PLA PSAN SG+IS T+  H+  + + ++I L++DGG + +G+ESTIV V+ + +V
Sbjct: 133 RFGKPLAAPSANSSGKISPTSAAHV-EADLGQKINLVLDGGAAAVGVESTIVKVEQDGRV 191

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           R+LRPGG+  E ++R   V LE     ++  ++PGML SHYAP + VRL A  V P EAL
Sbjct: 192 RLLRPGGIVTEEIERLAGVRLERPKKASAAIEAPGMLASHYAPGATVRLGATSVLPDEAL 251

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           IRFG + I   E A   L+LS +G L EAA NLF+Y+K AD SGA +IA ++IP HGLG 
Sbjct: 252 IRFGGIAISGEETARTILDLSPSGDLAEAAANLFDYLKAADASGADTIAITAIPTHGLGE 311

Query: 310 AINNRLERAAAPRN 323
           AIN+RL RAAAPR 
Sbjct: 312 AINDRLSRAAAPRG 325


>gi|325292109|ref|YP_004277973.1| hypothetical protein AGROH133_04322 [Agrobacterium sp. H13-3]
 gi|325059962|gb|ADY63653.1| hypothetical protein AGROH133_04322 [Agrobacterium sp. H13-3]
          Length = 325

 Score =  332 bits (851), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 165/314 (52%), Positives = 216/314 (68%), Gaps = 1/314 (0%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL+ A E L  G PIA+PTETVYGLA D+ +P AI R+YE K RP  NPLICH++DI+M
Sbjct: 13  TALQAAVEELSRGQPIALPTETVYGLAADATDPAAITRIYETKGRPQFNPLICHMADIAM 72

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            +++A  DP+S  LA+ FWPGPLTLVL L   + IH L+TA L T   RVP GF   LI 
Sbjct: 73  AERYAVFDPVSRRLAEAFWPGPLTLVLPLKPASGIHSLATAGLDTVGIRVPQGFAGDLIR 132

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +  PLA PSAN SG+IS T+  H+  + +   I LI+DGG + +G+ESTIV V+ + +V
Sbjct: 133 RFDKPLAAPSANSSGKISPTSAAHV-EADLGNRINLILDGGAASVGVESTIVKVEDDGRV 191

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           R+LRPGG+  E ++R    +LE     ++  ++PGML SHYAP + VRL A  V+  EAL
Sbjct: 192 RLLRPGGIVTEEIERITGTQLERPEKASAAIEAPGMLASHYAPGAAVRLDATSVSANEAL 251

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           IRFG + ++  E A   L+LS +G L EAA NLF+Y+K AD SGA++IA ++IP HGLG 
Sbjct: 252 IRFGGIAVEGQETARTVLDLSPSGDLAEAAANLFDYLKAADASGAATIAVTTIPAHGLGE 311

Query: 310 AINNRLERAAAPRN 323
           AIN+RL RAAAPR 
Sbjct: 312 AINDRLSRAAAPRG 325


>gi|222085082|ref|YP_002543612.1| translation factor sua5 protein [Agrobacterium radiobacter K84]
 gi|221722530|gb|ACM25686.1| translation factor sua5 protein [Agrobacterium radiobacter K84]
          Length = 324

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 165/302 (54%), Positives = 213/302 (70%), Gaps = 2/302 (0%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           GLPI +PTETVYGLA D+ NP AI R+YE K RP  NPLICH+SD++M +++A  DP+S 
Sbjct: 25  GLPIGLPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMSDLAMAERYAIFDPVSR 84

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA+ FWPGPLTLVL L   +DIHPL+TA L T   R+P GF  +LI  +G PLA PSAN
Sbjct: 85  KLAEAFWPGPLTLVLPLRPESDIHPLATAGLDTVGIRIPQGFAGELIRAFGRPLAAPSAN 144

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG+IS T+  H+    + + I LI+D G S +G+ESTIV V+   ++R+LRPGGL  + 
Sbjct: 145 TSGKISATSADHV-HDDLGERISLILDAGASVVGVESTIVKVE-HGEMRLLRPGGLAADE 202

Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           ++R     L+     ++  ++PGML SHYAP + VRL A  V+  EALIRFG   I  IE
Sbjct: 203 IERVAGQSLKRKNGASAAIEAPGMLASHYAPGAAVRLDATAVSSGEALIRFGKPDIAGIE 262

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            A + L+LS +G L EAA NLF++MK AD SGA++IAFSSIP+ GLG AIN+RL+RAAAP
Sbjct: 263 TAAVVLDLSPSGDLAEAAANLFDFMKRADASGAATIAFSSIPDEGLGEAINDRLQRAAAP 322

Query: 322 RN 323
           R 
Sbjct: 323 RE 324


>gi|86356545|ref|YP_468437.1| translation factor sua5 protein [Rhizobium etli CFN 42]
 gi|86280647|gb|ABC89710.1| probable translation factor sua5 protein [Rhizobium etli CFN 42]
          Length = 336

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/313 (53%), Positives = 210/313 (67%), Gaps = 2/313 (0%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL  AC  L  G  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH++D+ M
Sbjct: 23  TALEAACAALSDGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLEM 82

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            ++HA  DP+S  LA+ FWPGPLTLVL L + + IH L+TA L +   RVP GF   LI 
Sbjct: 83  AEQHAEFDPVSRALAEAFWPGPLTLVLPLKAESPIHALATAGLDSVGVRVPKGFAGTLIG 142

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G PLA PSAN SG IS T+  H+  + +  +IPLI+D G S +G+ESTIV V+ + +V
Sbjct: 143 AFGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSTVGVESTIVKVEGD-RV 200

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           R+LRPGGL    ++R     L      ++  ++PGML SHYAP + VRL A  V P EAL
Sbjct: 201 RLLRPGGLAAREIERIAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAVEPGEAL 260

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           I FG   ++   +A I L+LS  G L EAA NLF+YMK AD SG SSIAFS IP+ GLG 
Sbjct: 261 IAFGGAVVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIPDDGLGE 320

Query: 310 AINNRLERAAAPR 322
           AIN+RL+RAAAPR
Sbjct: 321 AINDRLQRAAAPR 333


>gi|190890611|ref|YP_001977153.1| translation factor protein [Rhizobium etli CIAT 652]
 gi|190695890|gb|ACE89975.1| probable translation factor protein [Rhizobium etli CIAT 652]
          Length = 334

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/313 (53%), Positives = 210/313 (67%), Gaps = 2/313 (0%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL  A   L  G  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M 
Sbjct: 24  ALEAASTALADGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMA 83

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           + HA+ DPLS  LA+ FWPGPLTLVL L   + IH L+TA L +   RVP GF   LI  
Sbjct: 84  EHHAAFDPLSRALAEAFWPGPLTLVLPLKPESPIHSLATAGLDSVGVRVPKGFAGALIGA 143

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PLA PSAN SG IS T+  H+  + +  +IPLI+D G S +G+ESTIV V+ + +VR
Sbjct: 144 FGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSAVGVESTIVKVEGD-RVR 201

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           +LRPGGL    ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI
Sbjct: 202 LLRPGGLAAREVERVAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAVEPGEALI 261

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG   ++   +A I L+LS  G L EAA NLF+YMK AD SG SSIAFS IP+ GLG A
Sbjct: 262 AFGGAAVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIPDDGLGEA 321

Query: 311 INNRLERAAAPRN 323
           IN+RL+RAAAPR+
Sbjct: 322 INDRLQRAAAPRD 334


>gi|209548153|ref|YP_002280070.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533909|gb|ACI53844.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 324

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/302 (54%), Positives = 204/302 (67%), Gaps = 2/302 (0%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  IAIPTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M ++HA  DP+S 
Sbjct: 25  GFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVSR 84

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA  FWPGPLTLVL L   + IH L+TA L +   RVP GF   LI  +G PLA PSAN
Sbjct: 85  ALAAAFWPGPLTLVLPLKPQSPIHSLATAGLDSVGVRVPKGFAGALIGAFGRPLAAPSAN 144

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG IS T+  H+  + +  ++PLI+D G S +G+ESTIV V+ + +VR+LRPGGL    
Sbjct: 145 TSGAISATSAAHV-EADLGAKVPLILDAGPSTVGVESTIVKVEGD-RVRLLRPGGLAARE 202

Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG   +    
Sbjct: 203 IERVAGRPLLRAKTASAAIEAPGMLASHYAPGAAVRLNATAVEPGEALIAFGGAAVSGTN 262

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            A I L+LS  G L EAA NLF+YMK AD SGASSIAFS+IP  GLG AIN+RL+RAAAP
Sbjct: 263 GARIVLDLSPRGDLAEAAANLFDYMKRADASGASSIAFSAIPEEGLGEAINDRLQRAAAP 322

Query: 322 RN 323
           R+
Sbjct: 323 RD 324


>gi|218682976|ref|ZP_03530577.1| probable translation factor protein [Rhizobium etli CIAT 894]
          Length = 334

 Score =  322 bits (824), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 164/302 (54%), Positives = 205/302 (67%), Gaps = 2/302 (0%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  IAIPTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M ++HA  DP+S 
Sbjct: 35  GFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVSR 94

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA  FWPGPLTLVL L   + IH L+TA L +   RVP GF   LI  +G PLA PSAN
Sbjct: 95  ALAAAFWPGPLTLVLPLKPESPIHSLATAGLDSVGIRVPKGFAGALIGAFGRPLAAPSAN 154

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG IS T+  H+  + +  ++PLI+D G S +G+ESTIV V+ + ++R+LRPGGL    
Sbjct: 155 TSGAISATSAAHV-EADLGAKVPLILDAGPSAVGVESTIVKVEGD-RLRLLRPGGLAARE 212

Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG+  +   E
Sbjct: 213 IERVAGRPLLRAKTASAAIEAPGMLASHYAPGAAVRLNARTVEPGEALIGFGSAAVSGAE 272

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            A I L+LS  G L EAA NLF+YMK AD SGASSIAFS IP  GLG AIN+RL+RAAAP
Sbjct: 273 AARIVLDLSPRGDLAEAAANLFDYMKRADASGASSIAFSPIPEEGLGEAINDRLQRAAAP 332

Query: 322 RN 323
           R+
Sbjct: 333 RD 334


>gi|241203341|ref|YP_002974437.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857231|gb|ACS54898.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 324

 Score =  319 bits (818), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 161/302 (53%), Positives = 202/302 (66%), Gaps = 2/302 (0%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  IAIPTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M ++HA  DP+S 
Sbjct: 25  GFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVSR 84

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA+ FWPGPLTLVL L   + IH L+ A L +   RVP GF   LI  +G PLA PSAN
Sbjct: 85  ALARAFWPGPLTLVLPLKPQSSIHSLAIAGLDSVGIRVPKGFAGALIGAFGRPLAAPSAN 144

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG +S T+  H+  + +   IPLI+D G S +G+ESTIV  +   ++R+LRPGGL    
Sbjct: 145 TSGGVSATSAAHV-EADLGARIPLILDAGPSAVGVESTIVKAEG-GRLRLLRPGGLAARE 202

Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG+  +   E
Sbjct: 203 IERVAGQPLLRARTASAAIEAPGMLASHYAPGASVRLNATAVEPGEALIAFGSAAVSGAE 262

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +A I L+LS  G L EAA NLF+YMK AD SGA SIAFS IP  GLG AIN+RL+RAAAP
Sbjct: 263 SARIVLDLSPRGDLAEAAANLFDYMKRADASGAQSIAFSPIPEEGLGEAINDRLQRAAAP 322

Query: 322 RN 323
           R+
Sbjct: 323 RD 324


>gi|222147737|ref|YP_002548694.1| hypothetical protein Avi_0976 [Agrobacterium vitis S4]
 gi|221734725|gb|ACM35688.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 323

 Score =  318 bits (816), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 159/312 (50%), Positives = 212/312 (67%), Gaps = 2/312 (0%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+R A   L+AG  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICHV+D++M 
Sbjct: 14  AIRAALPLLEAGEVIAMPTETVYGLAADATNPQAITRIYETKGRPQFNPLICHVADLAMA 73

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           + +   DPLS  LA+ FWPGPLTL++ L     IHPL+TA L T   R+P GF  +LI  
Sbjct: 74  EHYGVFDPLSRQLAERFWPGPLTLIVPLAPDCAIHPLATAGLDTVGLRMPLGFAAELIAA 133

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PLA PSAN SG+IS T   H+    +  +IPLI+D   + +G+ESTI+ V+ + +++
Sbjct: 134 FGKPLAAPSANTSGKISPTTAAHV-EEDLGAKIPLILDAEAAGVGVESTILKVE-DGQIQ 191

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           +LRPGGL +E ++ A  + +       +  ++PGML SHYAP + VRL    V   EA+I
Sbjct: 192 LLRPGGLSVEAVEEATGLRVIRPQKAGAIIEAPGMLASHYAPEAAVRLNVTSVYADEAVI 251

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG+   + +E A + LNLS +G L EAA NLF++MK AD SGA+ IAF++IP HGLG A
Sbjct: 252 TFGSAVPQGLEKAALVLNLSASGDLTEAAANLFSFMKRADASGAARIAFTAIPTHGLGDA 311

Query: 311 INNRLERAAAPR 322
           IN+RLERAAAPR
Sbjct: 312 INDRLERAAAPR 323


>gi|116250734|ref|YP_766572.1| Sua5 family protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255382|emb|CAK06457.1| putative Sua5 family protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 324

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/302 (53%), Positives = 204/302 (67%), Gaps = 2/302 (0%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  IAIPTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M ++HA  DPLS 
Sbjct: 25  GFAIAIPTETVYGLAADATNPLAIARIYETKGRPRFNPLICHMADLAMAEEHAEFDPLSR 84

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LAK FWPGPLTLVL L   + IH L+TA L +   RVP GF   LI  +G PLA PSAN
Sbjct: 85  ALAKAFWPGPLTLVLPLKRESPIHSLATAGLDSVGIRVPKGFAGALIGAFGRPLAAPSAN 144

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG +S T+  H+  + +  +IPLI+D G S +G+ESTIV  +   ++R+LRPGGL    
Sbjct: 145 TSGGVSATSAAHV-EADLGAKIPLILDAGPSAVGVESTIVKAEG-GRLRLLRPGGLAARE 202

Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG+  +   +
Sbjct: 203 IERIAGQPLLRAKAASAAIEAPGMLASHYAPGASVRLNATAVEPGEALIAFGSAAVSGAD 262

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +A I L+LS  G L EAA NLF+YMK AD SGA SIAFS IP  GLG AIN+RL+RAAAP
Sbjct: 263 SARIVLDLSPHGDLAEAAANLFDYMKRADASGARSIAFSPIPEEGLGEAINDRLQRAAAP 322

Query: 322 RN 323
           R+
Sbjct: 323 RD 324


>gi|163761038|ref|ZP_02168116.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43]
 gi|162281819|gb|EDQ32112.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43]
          Length = 323

 Score =  312 bits (799), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 159/323 (49%), Positives = 220/323 (68%), Gaps = 3/323 (0%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI++++D N LR A E L  G  +A+PTETVYGLA D+ NP+AI  +YE K RP  NPLI
Sbjct: 3   QILTVSDPNTLRAAVEALRRGEAVAVPTETVYGLAADATNPSAITAIYEAKGRPRFNPLI 62

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HVSD+ M + H    PL+  LA  FWPGPLTLVL L     IH L+TA L+TA  R+P 
Sbjct: 63  SHVSDMDMARAHVLFTPLAEKLAAAFWPGPLTLVLPLNPDGGIHELATAGLETAAVRIPE 122

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           GF + LI+++G PLA PSANRSG+IS T+ +H+ +  +   I L++DGG  ++G+ESTI+
Sbjct: 123 GFARTLIKSFGGPLAAPSANRSGRISPTSARHV-ADDLDGRINLVLDGGPCRVGVESTIL 181

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRA 240
            V  + K+ +LRPGG+ ++ ++ A  V ++    D  ++  +PGMLKSHYAP + +RL A
Sbjct: 182 AVNGD-KLTLLRPGGIPVDAIETAAGVAVDRPGPDAQTSVIAPGMLKSHYAPDAALRLNA 240

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V P EA+++FG  P+   + A + L+LS  G L+EAA NLF+ +K AD S A+ IA +
Sbjct: 241 TSVLPGEAILQFGGKPLDGQDKASLVLDLSPLGDLREAAANLFSMLKRADASQATGIAVA 300

Query: 301 SIPNHGLGIAINNRLERAAAPRN 323
            +P HGLG AIN+RL RAAAPR+
Sbjct: 301 PVPQHGLGEAINDRLNRAAAPRD 323


>gi|227821062|ref|YP_002825032.1| Sua5 family protein [Sinorhizobium fredii NGR234]
 gi|227340061|gb|ACP24279.1| Sua5 family protein [Sinorhizobium fredii NGR234]
          Length = 324

 Score =  311 bits (797), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 160/317 (50%), Positives = 213/317 (67%), Gaps = 2/317 (0%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I    A+ KAC  L  G P+AIPTETVYGLA D+ N  AI R+YE+K RP  NPLICHVS
Sbjct: 9   IEPDRAIEKACAALSEGEPVAIPTETVYGLAADATNADAISRIYEMKGRPRFNPLICHVS 68

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D++M + H   DPLS  LA+ FWPGPLTL+L     + +H L++A L+T   R+P GF++
Sbjct: 69  DMAMAEAHVVFDPLSRRLAEAFWPGPLTLILPERRESTVHALASAGLETLGIRMPEGFSR 128

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++I  +G PLA PSAN SG+IS T+  H+  + +  ++ LI+D G ++IGLESTI+ V+ 
Sbjct: 129 RVISHFGRPLAAPSANTSGKISPTSAAHV-EADLGAKLGLILDAGPAEIGLESTIIKVEA 187

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             ++R+LRPGGL+   ++    + +       +T ++PGML SHYAP + VRL A  V  
Sbjct: 188 -GRLRLLRPGGLDAAEIEALTGLTVGRPEAAGATIEAPGMLASHYAPGAAVRLNAKDVRK 246

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EALIRFG   +     A I L+LS +G L+EAA NLF+YMK AD SG SSIAF  +P+ 
Sbjct: 247 GEALIRFGGKALPGESAAAIVLDLSPSGNLREAAANLFDYMKRADASGVSSIAFGPVPSE 306

Query: 306 GLGIAINNRLERAAAPR 322
           GLG AI +RLERAAAPR
Sbjct: 307 GLGEAIVDRLERAAAPR 323


>gi|15964621|ref|NP_384974.1| hypothetical protein SMc00984 [Sinorhizobium meliloti 1021]
 gi|307309367|ref|ZP_07589030.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti BL225C]
 gi|307320103|ref|ZP_07599524.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti AK83]
 gi|15073799|emb|CAC45440.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306894318|gb|EFN25083.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti AK83]
 gi|306900236|gb|EFN30854.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti BL225C]
          Length = 324

 Score =  310 bits (793), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 211/318 (66%), Gaps = 2/318 (0%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I    A+ KAC  L  G P+AIPTETVYGLA D+  P AI R+YE+K RP  NPLICHV 
Sbjct: 9   IEPERAIEKACAVLSDGEPVAIPTETVYGLAADATTPDAISRIYEMKGRPRFNPLICHVC 68

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D++M + H + DP+S  LA+ FWPGPLTL+L     + +H L++A L T   R+P GF++
Sbjct: 69  DLAMAEAHVTFDPVSRRLAEAFWPGPLTLILPQRRESTVHTLASAGLDTLGIRMPDGFSR 128

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++I  +G PLA PSAN SG+IS T+  H+  + +   + LI+D G + IGLESTIV V+ 
Sbjct: 129 RVIARFGRPLAAPSANTSGKISPTSAAHV-QADLGSRLKLILDAGPAAIGLESTIVKVE- 186

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             ++R+LRPGGL+   ++    + +E      +  ++PGML SHYAP + VRL A  V  
Sbjct: 187 NGRLRLLRPGGLDAAEIEALTGLAIERPEAAGAVIEAPGMLASHYAPGAAVRLDADEVRK 246

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EALIRFG   +    +A I L+LS  G L+EAA NLF+YMK AD SGA++IAF  IP+ 
Sbjct: 247 GEALIRFGGEALPGEADAAIVLDLSPGGSLREAAANLFDYMKKADASGAATIAFGPIPSE 306

Query: 306 GLGIAINNRLERAAAPRN 323
           GLG AI +RL+RAAAPR 
Sbjct: 307 GLGEAIIDRLQRAAAPRG 324


>gi|150395706|ref|YP_001326173.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium medicae WSM419]
 gi|150027221|gb|ABR59338.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium medicae WSM419]
          Length = 324

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 210/318 (66%), Gaps = 2/318 (0%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I    A+  AC  L    P+AIPTETVYGLA D+    AI R+YE+K RP  NPLICHVS
Sbjct: 9   IEPERAIETACAVLSDAEPVAIPTETVYGLAADATTSDAISRIYEMKGRPRFNPLICHVS 68

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D++M + H + DPLS  LA+ FWPGPLTL+L     + +H L++A L T   R+P GF++
Sbjct: 69  DLAMAEAHVTFDPLSRRLAEAFWPGPLTLILPQRHESTVHTLASAGLDTLGIRMPDGFSR 128

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++I  +G PLA PSAN SG+IS T+  H+    +   + LI+D G + IGLESTIV V  
Sbjct: 129 RVIARFGRPLAAPSANTSGKISPTSAAHV-QGDLGPRLKLILDAGPAAIGLESTIVKVD- 186

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
              +R+LRPGGL+   ++    + +E      +T ++PGML SHYAPR+ VR+ A  V  
Sbjct: 187 NGALRLLRPGGLDAAEIEALTGLAIERPETAGATIEAPGMLASHYAPRAAVRINADDVRR 246

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EALIRFG   +    +A I ++LS TG L+EAA NLF+YMK AD SGA++IAF  IP+ 
Sbjct: 247 GEALIRFGGKALPGEGDAAIVMDLSPTGSLREAAANLFDYMKKADVSGAATIAFGPIPSE 306

Query: 306 GLGIAINNRLERAAAPRN 323
           GLG AI +RL+RAAAPR+
Sbjct: 307 GLGEAIIDRLQRAAAPRS 324


>gi|319408205|emb|CBI81858.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 320

 Score =  296 bits (757), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 155/317 (48%), Positives = 211/317 (66%), Gaps = 3/317 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S ++++A E L  G  +A+PTETVYGLA D+ N  A+  ++  KKRP  NPLI HVS I
Sbjct: 7   NSASIKEAVEVLKQGQLVALPTETVYGLAGDATNGKAVASIFTTKKRPQFNPLIVHVSSI 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            M + +  +D LS    + FWPGPLTLVL L    +IHPL+T+ L T   R P G   ++
Sbjct: 67  VMAEHYVEIDLLSRRFMEAFWPGPLTLVLPLKVNHNIHPLTTSGLDTLAVRFPVGGFAEV 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +G PLA PSAN+SG +S T+   +  +S+   +PLIIDGG+SKIGLESTI+ V C+K
Sbjct: 127 VQHFGRPLAAPSANQSGGLSPTSAASVF-ASLGASVPLIIDGGVSKIGLESTIIKV-CDK 184

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGG+  E ++      L+  +D+ +  ++PGMLKSHYAP + VRL A  V   E
Sbjct: 185 NIYLLRPGGVTAEEIEEVAGQPLKQ-LDQRAAIEAPGMLKSHYAPNALVRLNAQKVESDE 243

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           AL+ FG   I   ENAI  LNLS++G+L+EAAF+LF+YMK  D      IA  SIP +GL
Sbjct: 244 ALLAFGPKRIVGAENAISILNLSESGQLEEAAFHLFDYMKQLDSLKVRCIAVESIPFYGL 303

Query: 308 GIAINNRLERAAAPRNQ 324
           G+AIN+RL RAAAPR +
Sbjct: 304 GVAINDRLMRAAAPRGK 320


>gi|110633072|ref|YP_673280.1| translation factor SUA5 [Mesorhizobium sp. BNC1]
 gi|110284056|gb|ABG62115.1| translation factor SUA5 [Chelativorans sp. BNC1]
          Length = 318

 Score =  295 bits (754), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 153/314 (48%), Positives = 202/314 (64%), Gaps = 5/314 (1%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL  AC  L AG P+AIPTETVYGLA D+RN  A+ R++E K RP  NPLI H++D+ M 
Sbjct: 10  ALDAACRLLAAGEPVAIPTETVYGLAADARNGEAVARIFEAKGRPRFNPLIAHMADLEMA 69

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            + A   PL+L LA+ FWPGPLTLVL       IHPL TA L T   R P GF   +I  
Sbjct: 70  GRFAVFSPLALRLAQAFWPGPLTLVLPHRPDLGIHPLVTAGLDTLALRCPQGFAANVIAR 129

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PLA PSAN SG+++ T  + + ++++   I L++DGG +++GLESTIV V  E  + 
Sbjct: 130 FGRPLAAPSANISGRVTGTTAEAV-NAALGDRIRLVVDGGPARVGLESTIVKVADETLI- 187

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           +LRPGGL  E ++R   + L+   +     Q+PGML SHYAP + +RL A  V   EAL+
Sbjct: 188 LLRPGGLAAEEIERVAGMSLKRGANGV---QAPGMLASHYAPHAAIRLDASEVLAGEALL 244

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG    K  + A + LNLS +G L+EAA NLF+++   D  GA +IA   +P HGLG A
Sbjct: 245 GFGPDRAKGADQAAMVLNLSPSGDLREAAANLFSHLATLDAGGAKTIAVEPVPRHGLGEA 304

Query: 311 INNRLERAAAPRNQ 324
           IN+RL RAAAPR+Q
Sbjct: 305 INDRLARAAAPRDQ 318


>gi|260460343|ref|ZP_05808595.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033988|gb|EEW35247.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 324

 Score =  289 bits (740), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 155/321 (48%), Positives = 199/321 (61%), Gaps = 4/321 (1%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +    AL +A   L  G  +AIPTETVYGLA D+ N   + R++E K RP  NPLI HV+
Sbjct: 5   VGAGEALERALALLQGGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVA 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D++M ++ A  DPLS  LA  FWPGPLTLVL       IHPL TA L T   R+P GF  
Sbjct: 65  DMAMAERIALFDPLSKKLAIAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGG 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G PLA PSAN SG+IS T  + + ++ +   I L++DGG + +GLESTIV  + 
Sbjct: 125 DLIARLGRPLAAPSANSSGKISATTAQAV-AADLGARIRLVVDGGATPVGLESTIVKAEA 183

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             ++R+LRPGG+  E ++ A+ +EL       +  ++PGML SHYAP + VRL A  V  
Sbjct: 184 -GRLRLLRPGGIAAEDIEAAVGMEL--LRGGGAGVEAPGMLASHYAPGAAVRLNAGTVGD 240

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EAL+ FGN      + A    NLS TG L+EAA NLF YM+  D SGA +IA   IP  
Sbjct: 241 GEALLAFGNRRAAGWQRAAAFRNLSDTGDLREAATNLFAYMQDLDRSGARTIAVEPIPFD 300

Query: 306 GLGIAINNRLERAAAPRNQSQ 326
           GLG AIN+RL RAAAPR+ +Q
Sbjct: 301 GLGEAINDRLSRAAAPRDNTQ 321


>gi|49475221|ref|YP_033262.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1]
 gi|49238026|emb|CAF27233.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1]
          Length = 320

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 148/317 (46%), Positives = 214/317 (67%), Gaps = 3/317 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S ++++A   L+ G  +A+PTETVYGLA D+ N  AI  ++  K+RP  NPLI HVS I
Sbjct: 7   NSASVKEAVALLEQGRLVALPTETVYGLAGDATNGNAIASIFLTKRRPKFNPLIAHVSSI 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            M +++  +D LS HL ++FWPGPLT VL L +  +IHPL+T+ L T   R P  F  ++
Sbjct: 67  FMAERYVEIDFLSRHLMEVFWPGPLTFVLPLKAQHNIHPLTTSGLNTLAVRFPDSFFAEV 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +G PLA PSAN+SG +S T+ + +  +S+ + +PLI+DGG SKIGLESTI+ V  ++
Sbjct: 127 VKCFGRPLAAPSANQSGHLSPTSAEAVW-ASLGESVPLILDGGFSKIGLESTIIKV-SDE 184

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGG+  E ++      L+  +D+ +  ++PGMLKSHYAP + VRL    V   E
Sbjct: 185 NIYLLRPGGIAAEDIEEVAGKSLKR-IDQRAAIEAPGMLKSHYAPNAAVRLNVQKVEHGE 243

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           AL+ FG   I  +ENA+  LNLS++G+L+EAAF+LF YM+  D     SIA   IP++GL
Sbjct: 244 ALLAFGIKRIMGVENAVSVLNLSESGQLEEAAFHLFQYMRQLDSLKVRSIAVEPIPSYGL 303

Query: 308 GIAINNRLERAAAPRNQ 324
           G AIN+RL RAAAP+ +
Sbjct: 304 GEAINDRLIRAAAPKGK 320


>gi|319898590|ref|YP_004158683.1| hypothetical protein BARCL_0418 [Bartonella clarridgeiae 73]
 gi|319402554|emb|CBI76099.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 320

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/317 (48%), Positives = 208/317 (65%), Gaps = 3/317 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S A+++A   L  G  +A+PTETVYGLA D+ +  A+  ++  K RP  NPLI HVSDI
Sbjct: 7   NSEAIKQAVTILQQGKLVALPTETVYGLAGDATDGKAVASIFSTKGRPPFNPLIVHVSDI 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            M + +  +D LS  L + FWPGPLT+VL L    +IHPL+TA L T   R P G   ++
Sbjct: 67  VMAECYVEIDLLSRRLMEAFWPGPLTVVLPLKVHHNIHPLTTAGLNTLAVRFPRGGFAEI 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN+SG++S T+   +  +S+   +PLIIDGG SKIGLESTI+ + C++
Sbjct: 127 VRHFGRPLAAPSANQSGKLSPTSATSVF-TSLGTSVPLIIDGGDSKIGLESTIIKI-CDE 184

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            V ILRPGGL IE ++R     ++  +D+    ++PGML+SHYAP + VRL    V   E
Sbjct: 185 NVYILRPGGLAIEEIERVAKKSVKR-LDQQVAIEAPGMLRSHYAPDTSVRLNVKRVESGE 243

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           AL+ FG   I+  ENAI  LNLS+TG+L+EAAF+LF YM+  D      IA   IP +GL
Sbjct: 244 ALLAFGPKRIEGFENAIAVLNLSETGRLEEAAFHLFQYMQELDSLKVKCIAVEPIPFYGL 303

Query: 308 GIAINNRLERAAAPRNQ 324
           G AIN+RL RAAAP+ +
Sbjct: 304 GEAINDRLTRAAAPKGK 320


>gi|227821231|ref|YP_002825201.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234]
 gi|227340230|gb|ACP24448.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234]
          Length = 337

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 152/319 (47%), Positives = 205/319 (64%), Gaps = 16/319 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +  A E L  G  IA+PTETVYGLA D+ N  A+ ++++IK+RP  NPLICH SD+ MV
Sbjct: 12  GITSAVEALGRGDVIAVPTETVYGLAADATNEAAVSQIFDIKRRPGFNPLICHCSDLEMV 71

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            + A++DP+SL LA+ FWPGP+TLVL+  +   +  ++TA L T   R+P GF+  LI +
Sbjct: 72  SEFATLDPVSLRLAERFWPGPMTLVLN-SNPGRLPSVTTAGLTTVAIRIPMGFSNGLIRS 130

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           YG PLA PSAN SG++S T   H+  S     +PLI+DGG +KIG+ESTI+ V+ E  + 
Sbjct: 131 YGGPLAAPSANISGRVSATTAAHV-ESEFGDGVPLILDGGPTKIGVESTILRVR-ENGIE 188

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQ------SPGMLKSHYAPRSQVRLRAIHVN 244
           +LRPGGL IE ++ A  +++       S P       +PGML SHYAPR+ VRL A  V 
Sbjct: 189 LLRPGGLPIELVEHAAGLQV-------SAPNLFRKVLAPGMLTSHYAPRAMVRLNATGVG 241

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
           P E L++FG+  +          NLS  G L+E A  L+  +K ADD+GA SIA   IP+
Sbjct: 242 PGETLLKFGDAIVPGEGACARVFNLSPEGSLEEFAAKLYATLKEADDAGAESIAIVPIPD 301

Query: 305 HGLGIAINNRLERAAAPRN 323
            GLG+AIN+RL RAAAPR 
Sbjct: 302 EGLGLAINDRLRRAAAPRT 320


>gi|240850071|ref|YP_002971464.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii
           as4aup]
 gi|240267194|gb|ACS50782.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii
           as4aup]
          Length = 320

 Score =  285 bits (729), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 146/317 (46%), Positives = 212/317 (66%), Gaps = 3/317 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S ++R+A   L+ G  +A+PTETVYGLA D+ N  AI  ++  K RP +NPLI HVS I
Sbjct: 7   NSASIREAIALLEQGKLVALPTETVYGLAGDATNGRAISSIFSTKGRPQINPLIAHVSGI 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            M +++  +D LS  L + FWPGPLTLVL L    +IHPL+T+ L T   R P     ++
Sbjct: 67  EMAERYVKIDFLSRQLMEEFWPGPLTLVLPLKEQHNIHPLTTSGLNTLAVRFPDSLFAEV 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +G PLA PSAN+SG++S T+ + +  +S+ + +PLI+DGG +KIGLESTI+ + C++
Sbjct: 127 VQHFGRPLAAPSANQSGRLSPTSAEAVF-ASLGESVPLILDGGPAKIGLESTIIKI-CDE 184

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  + ++  +   L+  +D+ +  ++PGMLKSHYAP + +RL    V   E
Sbjct: 185 NIYLLRPGGLAADKIEEVVGKSLKR-IDQRAAIEAPGMLKSHYAPNATIRLNVEKVENGE 243

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           AL+ FG+  +   ENA+  LNLS+ GKL+EAAF+LF YMK  D      IA   IP++GL
Sbjct: 244 ALLAFGSKRVMGAENAVSILNLSEDGKLEEAAFHLFQYMKELDSFKVRCIAVEPIPSYGL 303

Query: 308 GIAINNRLERAAAPRNQ 324
           G AIN+RL RAAAP+ +
Sbjct: 304 GEAINDRLIRAAAPKEK 320


>gi|121602316|ref|YP_988708.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583]
 gi|120614493|gb|ABM45094.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583]
          Length = 320

 Score =  285 bits (728), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 153/317 (48%), Positives = 209/317 (65%), Gaps = 3/317 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S+++++A E L  G  + +PTETVYGLA D+ N  A+  ++ IK RP  NPLI HVS I
Sbjct: 7   NSHSIKEAVEILKKGQLVVLPTETVYGLAGDATNGKAVASIFAIKGRPQFNPLIAHVSSI 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            M + +  +D LS  L + FWPGPLTLVL L    +IHPL+TA L T   R P G   ++
Sbjct: 67  KMAECYVEIDCLSRRLMEAFWPGPLTLVLPLKPHHNIHPLTTAGLNTLAVRFPDGGFAEI 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +G PLA PSAN+SG +S T+   +   S+ +++ LIID G +KIGLESTIV V C+ 
Sbjct: 127 VQCFGRPLAAPSANQSGYLSPTSAASVF-DSLGEKVSLIIDNGPAKIGLESTIVKV-CDG 184

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGG+  E +++ +   L+  +D+ +  ++PGMLKSHYAP S VRL A  V   E
Sbjct: 185 NIYLLRPGGIIAEDIEKVVEKSLKR-MDQCAAIEAPGMLKSHYAPNSLVRLNAQTVENGE 243

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           AL+ FG   I  +ENAI  LNLS++G+L+EAAFN F YMK  D   A  IA   IP +GL
Sbjct: 244 ALLAFGTQRIAGVENAIYVLNLSESGQLEEAAFNFFQYMKQLDLFKARCIAVEPIPFYGL 303

Query: 308 GIAINNRLERAAAPRNQ 324
           G AIN+RL RAAAP+ +
Sbjct: 304 GEAINDRLIRAAAPKGE 320


>gi|319406928|emb|CBI80565.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 320

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 151/324 (46%), Positives = 212/324 (65%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+   ++ A+ +A   L  G  +A+PTETVYGLA D+ N  A+  ++  K RP  NPL
Sbjct: 1   MAILPFNNA-AINQAVAILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVSDI M + +  +D LS  L + FWPGPLT+VL L +  +IHPL+TA L T   R P
Sbjct: 60  IVHVSDIVMAECYVKIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G   ++I  +G PLA PSAN+SG++S T+   +  +S+   +PLIIDGG SKIGLESTI
Sbjct: 120 KGGFVEVIRHFGRPLAAPSANQSGKLSPTSALSVF-TSLGTSVPLIIDGGDSKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + + C++ + +LRPGGL IE +++     ++  +D+ +  ++PGMLKSHYAP + +RL  
Sbjct: 179 IKI-CDENIYLLRPGGLAIEEIEKVAKKSVKR-LDQKTAIEAPGMLKSHYAPNTSMRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I+ +ENA+  LNLS +G+L+EAAF+LF YM+  D      IA  
Sbjct: 237 KKVKSGEALLAFGPKRIEGVENAVAVLNLSTSGRLEEAAFHLFQYMQQLDSLKVKCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP +GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGK 320


>gi|319403916|emb|CBI77504.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 320

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/324 (45%), Positives = 210/324 (64%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+   ++ A+ +A      G  +A+PTETVYGLA D+ N  A+  ++  K RP  NPL
Sbjct: 1   MTILPFNNA-AINQAVAIFQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVSDI M + +  +D LS  L + FWPGPLT+VL L +  +IHPL+TA L T   R P
Sbjct: 60  IVHVSDIVMAECYVKIDLLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G   ++I  +G PLA PSAN+SG++S T+   +  +S+   +PLIIDGG SKIG+ESTI
Sbjct: 120 KGGFAEVIRHFGRPLAAPSANQSGKLSPTSALSVF-TSLGTSVPLIIDGGASKIGIESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + + C++ + +LRPGGL IE +++     ++    +T+  ++PGMLKSHYAP + +RL  
Sbjct: 179 IKI-CDENIYLLRPGGLAIEEIEKVAKKSVKRLEQQTAI-EAPGMLKSHYAPNTSMRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I+ +ENA+  LNLS +G+L+EAAF+LF YM+  D      IA  
Sbjct: 237 KKVKSGEALLAFGPKRIEGVENAVAVLNLSTSGRLEEAAFHLFQYMQQLDSLEVKCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP +GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGK 320


>gi|319405355|emb|CBI78972.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 320

 Score =  278 bits (712), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 149/317 (47%), Positives = 207/317 (65%), Gaps = 3/317 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S A+ +A   L  G  +A+PTETVYGLA D+ N  A+  ++  K RP  NPLI HVSDI
Sbjct: 7   NSAAINQAVTILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKGRPFFNPLIVHVSDI 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            M + +  +D LS  L + FWPGPLT+VL L +  +IHPL+TA L T   R P G   ++
Sbjct: 67  VMAECYVKIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAVRFPKGGFAEV 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I  +G PLA PSAN+SG++S T+   +   S+   +PLIIDGG SKIGLESTI+ + C++
Sbjct: 127 IRHFGRPLAAPSANQSGKLSPTSAISVF-KSLGTLVPLIIDGGASKIGLESTIIKI-CDE 184

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            V +LRPGGL IE + +     ++  +D+ +  ++PGMLKSHYAP + +RL    V   E
Sbjct: 185 NVYLLRPGGLAIEEIAKVAKKPVKR-LDQQAAIEAPGMLKSHYAPNTSMRLNVKKVESGE 243

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           AL+ FG   ++ +ENA+  LNLS++G+L+EAAF+LF YM+  D      IA   IP +GL
Sbjct: 244 ALLAFGPKRVEGVENAVAVLNLSESGRLEEAAFHLFQYMQQLDLPKVKCIAVEPIPFYGL 303

Query: 308 GIAINNRLERAAAPRNQ 324
           G AIN+RL RAAA + +
Sbjct: 304 GEAINDRLIRAAAAKGK 320


>gi|49473987|ref|YP_032029.1| hypothetical protein BQ03430 [Bartonella quintana str. Toulouse]
 gi|49239490|emb|CAF25843.1| hypothetical protein BQ03430 [Bartonella quintana str. Toulouse]
          Length = 320

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 150/324 (46%), Positives = 211/324 (65%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+ + +++ ++KA   L+ G  +A+PTETVYGLA D+ N  A+  ++  K+RP  NPL
Sbjct: 1   MTILPLNNAS-IKKAVALLEQGKLVALPTETVYGLAGDATNGRAVASIFFTKRRPKFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVS I M + +  +D LS  L ++FWPGPLTLVL L +  +IHPL+T+ L T   R P
Sbjct: 60  IAHVSGIVMAEHYVEIDFLSRRLMEVFWPGPLTLVLPLKAHHNIHPLTTSGLNTLAIRFP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +++E +G PLA PSAN+SG IS T+   +  + + + +PLI+DGG  KIGLESTI
Sbjct: 120 DSRFAEVVERFGRPLAAPSANQSGCISPTSAGAVF-AFLGESVPLILDGGACKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V V C + + +LRPGGL  E ++      L+  +D+ +  ++PGMLKSHYAP + VRL  
Sbjct: 179 VKV-CGESIYLLRPGGLAAEEIEAVAGKSLKR-LDQQAAIEAPGMLKSHYAPNAMVRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I  +ENA+  LNLS++G+L+EAA +LF YMK  D      IA  
Sbjct: 237 QKVKHGEALLAFGRKRIMGVENAVSVLNLSESGQLEEAASHLFEYMKQLDSLKVKYIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP++GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPSYGLGEAINDRLIRAAAPKEK 320


>gi|13476186|ref|NP_107756.1| hypothetical protein mlr7439 [Mesorhizobium loti MAFF303099]
 gi|14026946|dbj|BAB53542.1| mlr7439 [Mesorhizobium loti MAFF303099]
          Length = 327

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/325 (46%), Positives = 201/325 (61%), Gaps = 6/325 (1%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+++ +  AL +A   L  G  +AIPTETVYGLA D+ N   + R++E K RP  NPLI
Sbjct: 6   EILAVGE--ALERALALLGDGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLI 63

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV+D++M ++ A  DPLS  LA+ FWPGPLTLVL       IHPL TA L T   R+P 
Sbjct: 64  AHVADMAMAERIAVFDPLSKKLAQAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPR 123

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           GF   LI   G PLA PSAN SG+IS T  + + ++ +   I L++DGG + +GLESTIV
Sbjct: 124 GFGGDLIAKLGRPLAAPSANSSGRISATTAQAV-AADLGARIKLVVDGGATPVGLESTIV 182

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
             +    VR+LRP    I   +   ++ +E      +  ++PGML SHYAP + +RL A 
Sbjct: 183 KAEG-AGVRLLRP--GGIAAEEIEAAIGMELLRGGGAGIEAPGMLASHYAPGAAMRLNAG 239

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
            V   EAL+ FG    +   NA   LNLS +G L+EAA NLF YM+  D SGA +IA  +
Sbjct: 240 MVGEGEALLGFGGNRAEGWRNATAFLNLSASGDLREAASNLFAYMQELDRSGARTIAVET 299

Query: 302 IPNHGLGIAINNRLERAAAPRNQSQ 326
           IP  GLG AIN+RL RAAAPR+ +Q
Sbjct: 300 IPFDGLGEAINDRLARAAAPRDNAQ 324


>gi|319784740|ref|YP_004144216.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170628|gb|ADV14166.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 355

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/321 (48%), Positives = 204/321 (63%), Gaps = 4/321 (1%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +    AL +A   L  G  +AIPTETVYGLA D+ N   + R++E K RP  NPLI HV+
Sbjct: 36  LGSGEALERALALLREGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVA 95

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D++M ++ A  DPLS  LA+ FWPGPLTLVL       IHPL TA L T   R+P GF  
Sbjct: 96  DMAMAERLALFDPLSKKLARAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGG 155

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G PLA PSAN SG+IS T  + + ++ +   I L++DGG + +GLESTI+  + 
Sbjct: 156 DLIARLGRPLAAPSANSSGRISATTAQAV-AADLGARIKLVVDGGATPVGLESTILKAEG 214

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           E ++R+LRPGG+  E ++ AI +EL      T++ ++PGML SHYAP + +RL A  V  
Sbjct: 215 E-RMRLLRPGGIAAEEIEAAIGMEL--LRGGTASIEAPGMLASHYAPGAAMRLNAGTVGE 271

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EAL+ FG+        A   LNLS+TG L+EAA NLF YM+  D SGA +IA   IP  
Sbjct: 272 GEALLGFGSQRADGWRRAEAFLNLSETGDLREAASNLFAYMQALDRSGARTIAVEPIPCD 331

Query: 306 GLGIAINNRLERAAAPRNQSQ 326
           GLG AIN+RL RAAAPR+ +Q
Sbjct: 332 GLGEAINDRLSRAAAPRDITQ 352


>gi|153007869|ref|YP_001369084.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151559757|gb|ABS13255.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 332

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/319 (46%), Positives = 201/319 (63%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+++A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HVS I
Sbjct: 17  DDEAVQRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVSGI 76

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M +++ + D LS  LA++FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 77  AMAERYVTFDALSRKLAEMFWPGPLTIVLPLKDRQDTDRPIHPLVTAGLSTLAIRMPLGR 136

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +IE    P+A PSAN SG+IS T+ + + +  +  ++ LI+D G   +G+ESTIV V
Sbjct: 137 VRDIIEGLDSPVAAPSANTSGRISPTSARAV-ADDLGNKLDLILDAGPCGVGVESTIVKV 195

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
               KV +LRPGGL  E ++  I  +L    D TS  Q+PGM+ SHYAP + +RL    V
Sbjct: 196 DG-NKVHLLRPGGLAAEEIEAVIGEKLVRA-DHTSAIQAPGMMASHYAPDAAMRLGVGSV 253

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +   + A + +NLS  G L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 254 QPGEALLAFGPQRVAGADTAKVIMNLSADGNLREAAANLFDFMRRLDATGATTIAVEPIP 313

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 314 FEGLGEAINDRLKRAAAPR 332


>gi|163867863|ref|YP_001609067.1| hypothetical protein Btr_0635 [Bartonella tribocorum CIP 105476]
 gi|161017514|emb|CAK01072.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 320

 Score =  272 bits (696), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 143/317 (45%), Positives = 207/317 (65%), Gaps = 3/317 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S ++++A   L+ G  +A+PTETVYGLA D+ N  A+  ++  KKRP  NPLI HV+ I
Sbjct: 7   NSVSIKEAITLLEQGRLVALPTETVYGLAGDATNGRALSSIFSTKKRPQFNPLIAHVNGI 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            M +++  +D LS  L ++FWPGPLTLVL L    +IHPL+TA L T   R P     ++
Sbjct: 67  EMAERYVEIDFLSRRLMEVFWPGPLTLVLPLKKQHNIHPLTTAGLDTLAIRFPDSRFAEI 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PLA PSAN+SG++S T+ + +  +S+ + +PLI+DGG +KIGLESTI+ + C +
Sbjct: 127 VQCLGRPLAAPSANQSGRLSPTSAEAVF-TSLGESVPLILDGGPAKIGLESTIIKI-CGE 184

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           ++ +LRPGGL  + ++  +   L+  +D+ +  ++PGMLK+HYAP + +RL    V   E
Sbjct: 185 RIYLLRPGGLAADKIEEVVGRSLKR-IDQRAAIEAPGMLKTHYAPNAAIRLNVEKVENGE 243

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           AL+ FG   +   ENA   LNLS+ G L+EAA +LF YMK  D      IA   IP+ GL
Sbjct: 244 ALLAFGPKRVMGAENAAFILNLSEGGTLEEAASHLFQYMKELDSFKVRCIAVEPIPSWGL 303

Query: 308 GIAINNRLERAAAPRNQ 324
           G AIN+RL RAAAPR +
Sbjct: 304 GEAINDRLIRAAAPREK 320


>gi|239831281|ref|ZP_04679610.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823548|gb|EEQ95116.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum intermedium LMG
           3301]
          Length = 355

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 148/319 (46%), Positives = 197/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HVS I
Sbjct: 40  DDEAVLRAVEVLRRGGLVAIPTETVYGLAADASNGEGVAGIFAAKGRPQFNPLIAHVSGI 99

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M +++ + D LS  LA++FWPGPLT+VL L    D    IHPL TA L+T   R+P G 
Sbjct: 100 AMAERYVTFDALSRKLAEMFWPGPLTIVLPLKDRQDADRPIHPLVTAGLQTLAIRMPLGR 159

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +IE    P+A PSAN SG+IS T+   + +  +   + LI+D G   +G+ESTIV V
Sbjct: 160 VRDIIEGLDSPVAAPSANTSGRISPTSASAV-AGDLGNRLDLILDAGPCGVGVESTIVKV 218

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
               KV +LRPGGL  E ++  I  +L    D TS  Q+PGM+ SHYAP + +RL    V
Sbjct: 219 DG-NKVHLLRPGGLAAEEIEAVIGEKLVRA-DHTSAIQAPGMMASHYAPDAAMRLDVGSV 276

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P E L+ FG   +   E A   +NLS  G L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 277 QPGEVLLAFGPQRVAGAEGAATVMNLSANGNLREAAANLFDFMRRLDATGAATIAVEPIP 336

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 337 FDGLGEAINDRLKRAAAPR 355


>gi|256159112|ref|ZP_05456933.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M490/95/1]
 gi|256254451|ref|ZP_05459987.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti B1/94]
 gi|261221622|ref|ZP_05935903.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti B1/94]
 gi|265997584|ref|ZP_06110141.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M490/95/1]
 gi|260920206|gb|EEX86859.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti B1/94]
 gi|262552052|gb|EEZ08042.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M490/95/1]
          Length = 323

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 196/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A + LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAVVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|17987811|ref|NP_540445.1| SUA5 protein [Brucella melitensis bv. 1 str. 16M]
 gi|225851941|ref|YP_002732174.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457]
 gi|256044125|ref|ZP_05447032.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256264548|ref|ZP_05467080.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260563482|ref|ZP_05833968.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str.
           16M]
 gi|265990535|ref|ZP_06103092.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17983537|gb|AAL52709.1| sua5 protein [Brucella melitensis bv. 1 str. 16M]
 gi|225640306|gb|ACO00220.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457]
 gi|260153498|gb|EEW88590.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str.
           16M]
 gi|263001319|gb|EEZ13894.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094882|gb|EEZ18620.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326408439|gb|ADZ65504.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M28]
 gi|326538155|gb|ADZ86370.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M5-90]
          Length = 323

 Score =  262 bits (670), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 197/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +  +I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGQIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    + ++  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHSAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|306842310|ref|ZP_07474970.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO2]
 gi|306287567|gb|EFM59023.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO2]
          Length = 323

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 145/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTDRPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   IG+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGIGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|306845031|ref|ZP_07477612.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO1]
 gi|306274663|gb|EFM56452.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO1]
          Length = 323

 Score =  261 bits (668), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 196/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTDRPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCDVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL   +V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSNV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|254718586|ref|ZP_05180397.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. 83/13]
 gi|265983561|ref|ZP_06096296.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. 83/13]
 gi|306839897|ref|ZP_07472695.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. NF 2653]
 gi|264662153|gb|EEZ32414.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. 83/13]
 gi|306405083|gb|EFM61364.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. NF 2653]
          Length = 323

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAASV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|23501309|ref|NP_697436.1| Sua5/YciO/YrdC family protein [Brucella suis 1330]
 gi|62289392|ref|YP_221185.1| Sua5/YciO/YrdC family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699320|ref|YP_413894.1| Sua5/YciO/YrdC/YwlC family protein:SUA5 [Brucella melitensis biovar
           Abortus 2308]
 gi|161618380|ref|YP_001592267.1| Sua5/YciO/YrdC/YwlC family protein [Brucella canis ATCC 23365]
 gi|163842687|ref|YP_001627091.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis ATCC 23445]
 gi|189023644|ref|YP_001934412.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus S19]
 gi|225626914|ref|ZP_03784953.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti str. Cudo]
 gi|237814879|ref|ZP_04593877.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus str. 2308 A]
 gi|254688706|ref|ZP_05151960.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 6 str.
           870]
 gi|254696834|ref|ZP_05158662.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701213|ref|ZP_05163041.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 5 str. 513]
 gi|254703759|ref|ZP_05165587.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 3 str. 686]
 gi|254707862|ref|ZP_05169690.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis
           M163/99/10]
 gi|254713027|ref|ZP_05174838.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M644/93/1]
 gi|254716618|ref|ZP_05178429.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M13/05/1]
 gi|254729739|ref|ZP_05188317.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 4 str.
           292]
 gi|256031048|ref|ZP_05444662.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis
           M292/94/1]
 gi|256256953|ref|ZP_05462489.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 9 str.
           C68]
 gi|260168179|ref|ZP_05754990.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99]
 gi|260545856|ref|ZP_05821597.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus NCTC 8038]
 gi|260566987|ref|ZP_05837457.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 4 str. 40]
 gi|260754183|ref|ZP_05866531.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 6 str.
           870]
 gi|260757403|ref|ZP_05869751.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 4 str.
           292]
 gi|260761228|ref|ZP_05873571.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883208|ref|ZP_05894822.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 9 str.
           C68]
 gi|261218418|ref|ZP_05932699.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M13/05/1]
 gi|261315352|ref|ZP_05954549.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261320733|ref|ZP_05959930.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M644/93/1]
 gi|261751751|ref|ZP_05995460.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 5 str. 513]
 gi|261754405|ref|ZP_05998114.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 3 str. 686]
 gi|261757638|ref|ZP_06001347.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99]
 gi|265988119|ref|ZP_06100676.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis
           M292/94/1]
 gi|294851786|ref|ZP_06792459.1| translation factor [Brucella sp. NVSL 07-0026]
 gi|297247805|ref|ZP_06931523.1| translation factor [Brucella abortus bv. 5 str. B3196]
 gi|23347198|gb|AAN29351.1| Sua5/YciO/YrdC family protein [Brucella suis 1330]
 gi|62195524|gb|AAX73824.1| Sua5/YciO/YrdC family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615421|emb|CAJ10390.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal
           [Brucella melitensis biovar Abortus 2308]
 gi|161335191|gb|ABX61496.1| Sua5/YciO/YrdC/YwlC family protein [Brucella canis ATCC 23365]
 gi|163673410|gb|ABY37521.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis ATCC 23445]
 gi|189019216|gb|ACD71938.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus S19]
 gi|225618571|gb|EEH15614.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti str. Cudo]
 gi|237789716|gb|EEP63926.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus str. 2308 A]
 gi|260097263|gb|EEW81138.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus NCTC 8038]
 gi|260156505|gb|EEW91585.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 4 str. 40]
 gi|260667721|gb|EEX54661.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 4 str.
           292]
 gi|260671660|gb|EEX58481.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674291|gb|EEX61112.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 6 str.
           870]
 gi|260872736|gb|EEX79805.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 9 str.
           C68]
 gi|260923507|gb|EEX90075.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M13/05/1]
 gi|261293423|gb|EEX96919.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M644/93/1]
 gi|261304378|gb|EEY07875.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737622|gb|EEY25618.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99]
 gi|261741504|gb|EEY29430.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 5 str. 513]
 gi|261744158|gb|EEY32084.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 3 str. 686]
 gi|264660316|gb|EEZ30577.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis
           M292/94/1]
 gi|294820375|gb|EFG37374.1| translation factor [Brucella sp. NVSL 07-0026]
 gi|297174974|gb|EFH34321.1| translation factor [Brucella abortus bv. 5 str. B3196]
          Length = 323

 Score =  261 bits (667), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|256060542|ref|ZP_05450710.1| Sua5/YciO/YrdC/YwlC protein family [Brucella neotomae 5K33]
 gi|261324536|ref|ZP_05963733.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33]
 gi|261300516|gb|EEY04013.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33]
          Length = 323

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VYLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPEASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|256368861|ref|YP_003106367.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915]
 gi|255999019|gb|ACU47418.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915]
          Length = 323

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 195/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIVHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|254693189|ref|ZP_05155017.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 3 str.
           Tulya]
 gi|261213430|ref|ZP_05927711.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915037|gb|EEX81898.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 323

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/319 (45%), Positives = 194/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPAAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|256112929|ref|ZP_05453837.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994364|ref|ZP_06106921.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765477|gb|EEZ11266.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 323

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 143/319 (44%), Positives = 196/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I      +A PSAN SG+IS T+   + +  +  +I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSSVAAPSANTSGRISPTSAAAV-AGDLGGQIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    + ++  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHSAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|254504637|ref|ZP_05116788.1| Sua5/YciO/YrdC/YwlC family protein, putative [Labrenzia alexandrii
           DFL-11]
 gi|222440708|gb|EEE47387.1| Sua5/YciO/YrdC/YwlC family protein, putative [Labrenzia alexandrii
           DFL-11]
          Length = 331

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/309 (44%), Positives = 192/309 (62%), Gaps = 6/309 (1%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            +D GL +A+PTETVYGLA D+ + TA  R+++ K RP+ NPLI H+ ++   + H   D
Sbjct: 26  LIDGGL-VAVPTETVYGLAADATSGTACARIFQAKGRPSFNPLISHLPNLEAARHHGVFD 84

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             +L LA+ FWPGPLTLV+     ++I  L+TA L T   RVP G   + L E  G PLA
Sbjct: 85  DRALKLAEAFWPGPLTLVVPKTKASEISDLATAGLSTVALRVPSGPIMRYLSEITGRPLA 144

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANRSG+IS T  + ++ + +   +  +ID G  ++G+ESTI+ +  +++V +LRPGG
Sbjct: 145 APSANRSGKISPTRAEDVI-ADLGDALDFVIDAGPCEVGIESTIIGL-TDERVTLLRPGG 202

Query: 197 LEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
           L  E ++  +  +++     +    P +PGML SHYAP +Q+RL A  V   EAL+ FG 
Sbjct: 203 LAREAIESVLQTKVQTAASNSQPEAPAAPGMLTSHYAPNAQMRLHARAVARDEALLSFGA 262

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
            PI+  + A    NLS +G L EAA  LF  M+  D SGA +I    IPN GLG AIN+R
Sbjct: 263 DPIEGRDEAFAETNLSPSGDLVEAAARLFQAMRTLDSSGAKTIQVQDIPNTGLGEAINDR 322

Query: 315 LERAAAPRN 323
           L RAAAPR+
Sbjct: 323 LRRAAAPRD 331


>gi|148559471|ref|YP_001258429.1| Sua5/YciO/YrdC family protein [Brucella ovis ATCC 25840]
 gi|148370728|gb|ABQ60707.1| Sua5/YciO/YrdC family protein [Brucella ovis ATCC 25840]
          Length = 323

 Score =  259 bits (661), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 143/319 (44%), Positives = 195/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCSVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  + +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLNATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|316932620|ref|YP_004107602.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600334|gb|ADU42869.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris
           DX-1]
          Length = 332

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/326 (43%), Positives = 192/326 (58%), Gaps = 11/326 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           + ++ TD++   +A   L  G  +A PTETVYGL  D+ N  A+ RLY  K RP+ NPLI
Sbjct: 12  KTLTATDAD---EAVRALRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLI 68

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV+D+   +  A  D  +L LA+ FWPGPLTLVL   +   +  L+TA L +   RVP 
Sbjct: 69  AHVADLDAARLIARFDTAALRLAETFWPGPLTLVLPKATNCSVCDLATAGLDSVALRVPS 128

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L+  +G P+  PSANRSG +S T   H+ ++ +   I +I+DGG   +G+ESTI
Sbjct: 129 HPVAQALLRAFGGPVVAPSANRSGHVSPTTAAHV-AADLGGRIDVIVDGGPVMVGVESTI 187

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQV 236
           V   C     +LRPGG+  E ++R +  +L       + +   P +PGML SHYAPR+ V
Sbjct: 188 VG--CLGAPVLLRPGGVPREAIERVLGHKLGAPAATNITDDHAPLAPGMLASHYAPRATV 245

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           RL A  V P EAL+ FG+      E A+   NLS  G L EAA  LF  ++  D+ GA  
Sbjct: 246 RLNAAEVKPGEALLAFGSELPPGAETAVAVHNLSPRGDLAEAAAQLFGALRALDERGARG 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322
           IA  SIP+HGLG AIN+RL RAAAPR
Sbjct: 306 IAVMSIPHHGLGEAINDRLRRAAAPR 331


>gi|218673734|ref|ZP_03523403.1| probable translation factor protein [Rhizobium etli GR56]
          Length = 277

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/254 (50%), Positives = 166/254 (65%), Gaps = 2/254 (0%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M + HA  DP+S 
Sbjct: 25  GFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEHHAEFDPVSR 84

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA+ FWPGPLTLVL L + + IH L+TA L +   RVP GF   LI  +G PLA PSAN
Sbjct: 85  ALAEAFWPGPLTLVLPLKAESPIHSLATAGLDSVGVRVPKGFAGALIGAFGRPLAAPSAN 144

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG IS T+  H+  + +  +IPLI+D G S +G+ESTIV V+ + +VR+LRPGGL    
Sbjct: 145 TSGAISATSAAHV-EADLGAKIPLILDAGPSTVGVESTIVKVEGD-RVRLLRPGGLAARE 202

Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG   ++   
Sbjct: 203 IERIAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAVEPGEALIAFGGAAVEGAR 262

Query: 262 NAIISLNLSKTGKL 275
           +A I L+LS  G L
Sbjct: 263 DARIVLDLSPRGDL 276


>gi|115526373|ref|YP_783284.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisA53]
 gi|115520320|gb|ABJ08304.1| translation factor SUA5 [Rhodopseudomonas palustris BisA53]
          Length = 327

 Score =  253 bits (645), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/324 (43%), Positives = 189/324 (58%), Gaps = 6/324 (1%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++S +DS   R     +D GL +A PTETVYGL  D+   TA+ RLY+ K RPA NPLI
Sbjct: 8   RLLSASDSAVDRAVACLIDGGL-VAFPTETVYGLGADATQATAVARLYQAKGRPAFNPLI 66

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV+D++  +K    D  +L LA+ FWPGPLTLV+   +   +  L+TA L T   R+P 
Sbjct: 67  AHVADLAAAQKIGRFDQNALRLAQAFWPGPLTLVVQKAAGCPVAELATAGLDTIAIRIPA 126

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + ++   G P+  PSANRSG +S T   H+    +   I LI+DGG   +G+ESTI
Sbjct: 127 HAVARAILRGLGRPVVAPSANRSGHVSPTTAAHV-RGDLDGRIDLIVDGGPVTVGVESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLR 239
           V   C  K  +LRPGGL  + ++  +   L    +     P +PGML SHYAPRS+VRL 
Sbjct: 186 VG--CFAKPVLLRPGGLPRQAIEAVLGEPLASPGEAAGAKPLAPGMLASHYAPRSRVRLD 243

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A  V P EAL+ FG+   +  + A   LNLS  G L EAA NLF +++  D +    IA 
Sbjct: 244 ATRVEPGEALLAFGSPLPQGADLAATVLNLSARGDLTEAAANLFGHLRALDGASPRGIAV 303

Query: 300 SSIPNHGLGIAINNRLERAAAPRN 323
             +P+ GLG AIN+RL RAA PR 
Sbjct: 304 MPVPHEGLGEAINDRLARAAVPRE 327


>gi|328544911|ref|YP_004305020.1| translation factor sua5 protein [polymorphum gilvum SL003B-26A1]
 gi|326414653|gb|ADZ71716.1| Probable translation factor sua5 protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 332

 Score =  249 bits (635), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 138/310 (44%), Positives = 183/310 (59%), Gaps = 4/310 (1%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           CE L AG  + +PTETVYGLA D+ N  A   +Y  K RP  NPLI H+  +   ++H  
Sbjct: 23  CEALLAGNLVGVPTETVYGLAADATNGRACAAIYAAKGRPRFNPLISHLESLDAARRHGV 82

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            D  +  LA+ FWPGPLTLV+   + + I  L TA L T   RVP     + L E  G P
Sbjct: 83  FDARAHALAQAFWPGPLTLVVPKAAGSPICDLVTAGLDTVALRVPAAPVMRFLAERTGRP 142

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           LA PSAN SG+IS T    ++   +   +  +ID G   IG+ESTIV +   + V +LRP
Sbjct: 143 LAAPSANLSGRISATTADDVIRD-LGDAVAFVIDAGPCPIGIESTIVGLAGAEPV-LLRP 200

Query: 195 GGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           GG+  E ++R +   L     ++   PQ+PGML SHYAP + VRL A  V   EAL+ FG
Sbjct: 201 GGIAREAIERVLGRPLAAAQTEQADAPQAPGMLTSHYAPNATVRLAATEVASGEALLAFG 260

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
             P   +E A+ ++NLS TG L EAA  LF+ ++  D SGA++I    IP+ GLG AIN+
Sbjct: 261 PTPPAGVERAVATVNLSPTGDLAEAAATLFSALRRLDASGAATICVQPIPDGGLGEAIND 320

Query: 314 RLERAAAPRN 323
           RL RAAAPR+
Sbjct: 321 RLRRAAAPRH 330


>gi|90420143|ref|ZP_01228051.1| Sua5/YciO/YrdC/YwlC family protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335477|gb|EAS49227.1| Sua5/YciO/YrdC/YwlC family protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 322

 Score =  248 bits (634), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 135/299 (45%), Positives = 182/299 (60%), Gaps = 3/299 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           + IPTETVYGLA D+ +  A+ R++E K RP  NPLICHV D++M    A + P++  LA
Sbjct: 27  VGIPTETVYGLAADATDGAAVARIFEAKGRPRFNPLICHVPDLAMAATLAEIGPVAAMLA 86

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
           + FWPGPLT+VL L   + +HPL+TA L T   R P G   +L    G PLA PSAN SG
Sbjct: 87  EAFWPGPLTMVLPLKEGSPVHPLATAGLATVAIRAPQGIAGRLAAALGRPLAAPSANPSG 146

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204
           ++S TN   +L   +   +PLI+DGG  ++G+ESTIV  + ++ V +LR GG+    L R
Sbjct: 147 RVSPTNAGQVL-RGLGGRLPLILDGGPCEVGVESTIVLPEADRLV-LLRAGGVGRAELAR 204

Query: 205 AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI 264
           A  + +     + +   +PG L SHYAP  +VRL A  V P E LI FG  P+   + A 
Sbjct: 205 ATGLPVVDPAGDAAI-NAPGQLTSHYAPSGRVRLDATDVAPGEYLIAFGPAPVAGQDRAA 263

Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
             +NLS +G L+EAA  LF  +   D    ++IA + IP  GLG AIN+RL RAAAPR 
Sbjct: 264 AIVNLSPSGDLREAAAGLFAALAGFDAPEITAIAVAPIPQSGLGEAINDRLRRAAAPRG 322


>gi|148253877|ref|YP_001238462.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1]
 gi|146406050|gb|ABQ34556.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1]
          Length = 333

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 183/310 (59%), Gaps = 9/310 (2%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           F   GL +A PTETVYGL  D+ N  AI RLY+ K RPA NPLI HV+D++  ++    D
Sbjct: 28  FARGGL-VAFPTETVYGLGADASNAAAITRLYQAKGRPAFNPLIAHVADVAAARRIGRFD 86

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
            ++  LA+ FWPGPLTLVL       +  L+TA L T   RVP     + L+  +G  + 
Sbjct: 87  AVAERLAQAFWPGPLTLVLPQAEGCPVADLATAGLDTVAIRVPAHPVARALLAAFGGAVV 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG +S T   H+ ++ +   I LI+DGG  ++G+ESTI+   C  +  +LRPGG
Sbjct: 147 APSANISGHVSPTMAAHV-AADLDGRIDLILDGGAVEVGVESTIIG--CFDEPTLLRPGG 203

Query: 197 LEIET----LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           +  E     L R ++         +  P +PGML SHYAPR+ VRL A  V P EAL+ F
Sbjct: 204 VPREAIEAVLGRPLARAAAAEAQASEQPLAPGMLASHYAPRAAVRLAATEVAPDEALLAF 263

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
           G V I    +A   LNLS +G   EAA +LF Y++  D  GA SIA   IP+ GLG AIN
Sbjct: 264 GPVAIPGAADAAAMLNLSPSGDPAEAATHLFGYLRSLDAKGARSIAVMPIPDDGLGEAIN 323

Query: 313 NRLERAAAPR 322
           +RL RAAAPR
Sbjct: 324 DRLRRAAAPR 333


>gi|254452824|ref|ZP_05066261.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Octadecabacter
           antarcticus 238]
 gi|198267230|gb|EDY91500.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Octadecabacter
           antarcticus 238]
          Length = 315

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/317 (46%), Positives = 181/317 (57%), Gaps = 13/317 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD   L  A   L  G  +A PTETVYGL VD+RN  A+ RLY+ K RP+ NPLI HV  
Sbjct: 11  TDQAELDAAARVLAGGGLVAFPTETVYGLGVDARNSDAVARLYQAKGRPSFNPLIVHVGS 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           I   K+    D  +L LA+ FWPG LTLVL L   + I PL TA L+T   RVP      
Sbjct: 71  IEAAKQFVEFDHTALVLAQAFWPGALTLVLPLRRDSAISPLVTAGLETLAIRVPDHSVAN 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+  +G P+A PSAN SGQ+S T   H+    +   I  I+DGG   +GLESTIV  + 
Sbjct: 131 GLLAAFGGPVAAPSANPSGQVSPTKFAHV-RDLMTGRIDGIVDGGDCGVGLESTIVATKP 189

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
                +LR GGL +E ++ A+  +L    D TS P SPG L SHYAP   VRL A  V  
Sbjct: 190 TPT--LLRAGGLPVEAIEAALGYDLALAGD-TSAPSSPGQLASHYAPAGTVRLNAQTVEA 246

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            E L+ FG V          +LNLS +G L  AA  LF+ +   +  GA+ IA S IP+H
Sbjct: 247 GETLLGFGPVD--------AALNLSPSGDLIHAAARLFDALHQLNAMGAARIAVSPIPDH 298

Query: 306 GLGIAINNRLERAAAPR 322
           GLG AIN+RL RAAAPR
Sbjct: 299 GLGRAINDRLRRAAAPR 315


>gi|192289677|ref|YP_001990282.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192283426|gb|ACE99806.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 326

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 177/302 (58%), Gaps = 7/302 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ N  A+ RLY  K RP+ NPLI HV+D+   +  A  D  +L LA
Sbjct: 27  VAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDAAALRLA 86

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLVL   +   +  L+TA L +   R+P     + L+  +G P+  PSANRS
Sbjct: 87  EAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFGGPVVAPSANRS 146

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G +S T   H+ +S +   I +I+DGG   +G+ESTIV+  C     +LRPGGL  E ++
Sbjct: 147 GHVSPTTAAHV-ASDLDGRIDVIVDGGPVMVGVESTIVS--CLGAPVLLRPGGLPREAIE 203

Query: 204 RAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
           R +   L       +    P +PGML SHYAPR+ VRL A  V P EAL+ FG       
Sbjct: 204 RVLGQALGTPTTNNADDHAPLAPGMLASHYAPRALVRLNATEVKPGEALLAFGPELPPGA 263

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           E A    NLS  G L EAA +LF  ++  DD GA  IA   IP HGLG AIN+RL RAAA
Sbjct: 264 ETAAAVHNLSPRGDLPEAAAHLFGALRALDDRGARGIAVMPIPFHGLGEAINDRLRRAAA 323

Query: 321 PR 322
           PR
Sbjct: 324 PR 325


>gi|254437009|ref|ZP_05050503.1| Sua5/YciO/YrdC/YwlC family protein, putative [Octadecabacter
           antarcticus 307]
 gi|198252455|gb|EDY76769.1| Sua5/YciO/YrdC/YwlC family protein, putative [Octadecabacter
           antarcticus 307]
          Length = 315

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/318 (45%), Positives = 186/318 (58%), Gaps = 13/318 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD   L KA   L  G  +A PTETVYGL VD+ N  A+ RLY  K RP+ NPLI H+ 
Sbjct: 10  VTDRTELDKAACVLAGGGLVAFPTETVYGLGVDACNSDAVARLYLAKGRPSFNPLIVHIG 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            I   ++    D  +L LA+ FWPG LTLVL L   + I PL TA L T   RVP  G  
Sbjct: 70  SIEAAQQFVDFDDTALALAQAFWPGALTLVLPLRHDSTISPLVTAGLGTLAIRVPDHGVA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +L+  +G P+A PSAN SGQ+S T   H+    +   I  +IDGG   +GLESTI+ ++
Sbjct: 130 NRLLAAFGGPIAAPSANPSGQVSPTKFAHV-RDLMSGRIDGVIDGGDCGVGLESTIIAMK 188

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
                 +LR GGL +E ++ A+   L     ETS P SPG L SHYAP+  VRL A  V 
Sbjct: 189 PVPT--LLRAGGLPVEAIEAALGYNLAL-TGETSAPSSPGQLASHYAPKGTVRLNARSVE 245

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             E L+ FG  P++ +      +NLS +G L +AA  LF+ +   +  GA+ IA S IP+
Sbjct: 246 TGETLLGFG--PVEAV------INLSSSGDLVQAAAGLFDALHQLNAMGAARIAVSPIPD 297

Query: 305 HGLGIAINNRLERAAAPR 322
           HGLG AIN+RL RAAAPR
Sbjct: 298 HGLGRAINDRLRRAAAPR 315


>gi|118589276|ref|ZP_01546682.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain protein [Stappia
           aggregata IAM 12614]
 gi|118437976|gb|EAV44611.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain protein [Stappia
           aggregata IAM 12614]
          Length = 331

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/311 (44%), Positives = 182/311 (58%), Gaps = 5/311 (1%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           C  L AG  +A+PTETVYGLA D+ N TA  +++  K RP  NPLI HV  +     H  
Sbjct: 23  CAALMAGELVAVPTETVYGLAADATNGTACAKIFAAKGRPQFNPLISHVQTLGAALDHGV 82

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            D  +L LA+ FWPGPLTLV+   + + I  L+TA L+T   RVP G   + L E  G P
Sbjct: 83  FDERALALAEAFWPGPLTLVVPKRAGSPISDLATAGLQTVALRVPVGPVMRFLAEKTGRP 142

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           LA PSANRSG+IS T  + ++ + +   +  +ID G   +G+ESTIV +  +   R+LRP
Sbjct: 143 LAAPSANRSGKISPTRAEDVV-ADLGPSLSFVIDAGACAVGIESTIVGL-VDGTPRLLRP 200

Query: 195 GGLEIETLKRAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           GGL  E ++R +   LE    +     P +PGML SHYAP + + L A  V+  + L+ F
Sbjct: 201 GGLAREDIERVLGQPLEGASPDMRPDAPAAPGMLTSHYAPDAAMLLNASEVSAGDGLLSF 260

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
           G   +   E A    NLS TG L EAA NLF  M+  D  G S+I    IP+ GLG AIN
Sbjct: 261 GTNRLPGAELAKAEFNLSPTGGLAEAAANLFRAMRFLDAQGVSTIKVQFIPSFGLGEAIN 320

Query: 313 NRLERAAAPRN 323
           +RL RAAAPR+
Sbjct: 321 DRLRRAAAPRD 331


>gi|298294372|ref|YP_003696311.1| Sua5/YciO/YrdC/YwlC family protein [Starkeya novella DSM 506]
 gi|296930883|gb|ADH91692.1| Sua5/YciO/YrdC/YwlC family protein [Starkeya novella DSM 506]
          Length = 335

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 139/306 (45%), Positives = 183/306 (59%), Gaps = 11/306 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PTETVYGLA D+ +P A+  LY  K RP+ NPLI HV DI   ++   + P +  LA
Sbjct: 33  VALPTETVYGLACDATDPHAVAGLYAAKGRPSFNPLIAHVPDIDAARRVGHLTPAAETLA 92

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLV+  +       L+ A L +   RVP     + ++   G P+A PSANRS
Sbjct: 93  RRFWPGPLTLVVPAIEGATSE-LARAGLSSVAIRVPAHPVAQAVLRAAGRPIAAPSANRS 151

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G +S T+  H+ S+ +   I LI+D G S +G+ESTI++   E  V +LRPGGL  E +K
Sbjct: 152 GHVSPTSAAHV-SADLDGRIDLILDAGASAVGVESTILDCTGEVPV-MLRPGGLPREAIK 209

Query: 204 RAISVELE----YCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            A+   L       V+E      P +PGML SHYAP   VRLRA  V P EAL+ F    
Sbjct: 210 EALGAPLASPAPRVVEEAEAGEAPLAPGMLASHYAPTIPVRLRAREVKPGEALLTFAGAQ 269

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
               E A+  L+LS TG L EAA NLF +++  D SGA +IA  ++P HGLG AI +RL 
Sbjct: 270 PPGAEQAVARLDLSPTGDLVEAAANLFAHLRALDSSGAIAIAVVALPRHGLGEAIADRLR 329

Query: 317 RAAAPR 322
           RAAAPR
Sbjct: 330 RAAAPR 335


>gi|39934152|ref|NP_946428.1| SUA5/yciO/yrdC domain-containing protein [Rhodopseudomonas
           palustris CGA009]
 gi|39648000|emb|CAE26520.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Rhodopseudomonas
           palustris CGA009]
          Length = 348

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/308 (45%), Positives = 178/308 (57%), Gaps = 7/308 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A PTETVYGL  D+ N  A+ RLY  K RP+ NPLI HV+D+   +  A  D 
Sbjct: 43  LRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDA 102

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +L LA+ FWPGPLTLVL   +   +  L+TA L +   R+P     + L+  +  P+  
Sbjct: 103 AALRLAEAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFDGPVVA 162

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG +S T   H+ +S +   I +I+DGG   +G+ESTIV+  C     +LRPGGL
Sbjct: 163 PSANRSGHVSPTTAAHV-ASDLDGRIDVIVDGGPVMVGVESTIVS--CLGAPVLLRPGGL 219

Query: 198 EIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
             E ++R +   L       S    P +PGML SHYAPR+ VRL A  V P EAL+ FG 
Sbjct: 220 PREAIERVLDQALGTPTTNNSDDHAPVAPGMLASHYAPRALVRLNATEVKPGEALLAFGP 279

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
                 E A    NLS  G L EAA +LF  ++  DD GA  IA   IP HGLG AIN+R
Sbjct: 280 ELPPGAETAAAVHNLSPRGDLTEAAAHLFGALRALDDRGARGIAVMPIPFHGLGEAINDR 339

Query: 315 LERAAAPR 322
           L RAAAPR
Sbjct: 340 LRRAAAPR 347


>gi|220922794|ref|YP_002498096.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium nodulans ORS
           2060]
 gi|219947401|gb|ACL57793.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium nodulans ORS
           2060]
          Length = 335

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 132/316 (41%), Positives = 182/316 (57%), Gaps = 3/316 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  L +A   L  G  +A PTETVYGL  D+ N  A+  +Y  K+RP  NPLI H+ D+
Sbjct: 22  DAAGLAEAARLLREGRLVAFPTETVYGLGGDATNGAAVAGIYAAKERPRFNPLIAHLPDL 81

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +  ++  +  P +L LA+ FWPGPLTLV+       +  L+ A L +   RVP     + 
Sbjct: 82  AAARREGAFGPEALRLAETFWPGPLTLVVPRAEDACVCDLALAGLDSVALRVPAARLARD 141

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A PSANRSG++S TN  H+L   +   I  ++DGG   +G+ESTIV    +
Sbjct: 142 LLRAVGRPVAAPSANRSGRVSPTNADHVLGD-LDGRIAAVLDGGACPVGVESTIVAC-LD 199

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
              ++LRPGG+  E ++  +   L         P +PG+L SHYAPR+ VRL A  +   
Sbjct: 200 GDPQLLRPGGVPREAIEAVLGRPLRAPGAAGEAPVAPGLLASHYAPRAAVRLDAAAIGED 259

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EA + FG      +  A   LNLS +G L EAA NLF+ ++  D SGA++IA   IP HG
Sbjct: 260 EAALLFGEARPAGLARARFILNLSPSGDLAEAAANLFSMLRRLDASGAATIAVMPIPRHG 319

Query: 307 LGIAINNRLERAAAPR 322
           LG AI +RL RAAAPR
Sbjct: 320 LGEAIADRLARAAAPR 335


>gi|307941534|ref|ZP_07656889.1| protein SUA5 [Roseibium sp. TrichSKD4]
 gi|307775142|gb|EFO34348.1| protein SUA5 [Roseibium sp. TrichSKD4]
          Length = 329

 Score =  242 bits (617), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 135/317 (42%), Positives = 181/317 (57%), Gaps = 4/317 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  L      L AG  + +PTETVYGLA D+ NP A  R++E K RP  NPLI H   +
Sbjct: 15  DTAMLSTVSTALKAGDLVGVPTETVYGLAADASNPEACARIFEAKGRPQFNPLISHADTL 74

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              ++H   +  +  LA  FWPGPLTLVL    T+ I  L+TA L +   RVP G   + 
Sbjct: 75  ETARQHGVFNAKADRLAAAFWPGPLTLVLPKRETSSISDLATAGLDSVALRVPAGAVMRA 134

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L    G PLA PSAN SG+IS T    ++ + +   +  +ID G   +G+ESTI+    +
Sbjct: 135 LAAETGCPLAAPSANLSGKISATTADDVI-ADLGSSVAHVIDAGPCPVGVESTIIAC-ID 192

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNP 245
            +VR+LRPGG+  E ++  +   L+       T PQ+PGML SHYAP ++VRL A HV  
Sbjct: 193 DQVRLLRPGGVPAEDIECVLGHPLDVVRAANDTNPQAPGMLTSHYAPGARVRLEADHVEA 252

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EAL+ FG   +   + A    NLS+ G L+EAA  LF  ++  D S A ++    IP  
Sbjct: 253 GEALLAFGPASLPGADTANAVFNLSENGDLREAATRLFAGLRALDASKAQTVCVQHIPQE 312

Query: 306 GLGIAINNRLERAAAPR 322
           GLG AIN+RL RAAAPR
Sbjct: 313 GLGAAINDRLRRAAAPR 329


>gi|188583774|ref|YP_001927219.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium populi BJ001]
 gi|179347272|gb|ACB82684.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium populi BJ001]
          Length = 329

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 131/317 (41%), Positives = 181/317 (57%), Gaps = 3/317 (0%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D++ L +A   + AG  +A+PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+ 
Sbjct: 15  ADADGLARAAALIGAGRLVALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVAT 74

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-K 125
           +       + D  +L LA+ FWPGPLTLV+   ST  +  L+ A L +   RVP   T +
Sbjct: 75  VEAALGEGTFDEAALRLAEHFWPGPLTLVVPAASTGSVCDLARAGLDSVALRVPAHATAR 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+E  G P+A PSANRSG++S T+  H+L + +   I  ++DGG   +G+ES++V    
Sbjct: 135 ALLERVGRPVAAPSANRSGRVSPTSADHVL-TDLDGRIAAVLDGGACPVGVESSVVACLG 193

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
               R+LRPGG+    +   +    E   D  S P  PG+L SHYAPR+ VRL A  + P
Sbjct: 194 GPP-RLLRPGGVTRAAIAAVLGFAPEAGGDPGSRPVGPGLLASHYAPRAGVRLDATGLEP 252

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA++ FG      ++ A     LS  G   EAA  LF  ++  D SGA +IA   +P  
Sbjct: 253 GEAVLLFGAFRPAGLDRAAAVETLSARGDPAEAAARLFGALRRLDASGAPTIAVVPVPEE 312

Query: 306 GLGIAINNRLERAAAPR 322
           GLG AIN+RL RAAAPR
Sbjct: 313 GLGEAINDRLRRAAAPR 329


>gi|254471762|ref|ZP_05085163.1| Sua5/YciO/YrdC/YwlC family protein [Pseudovibrio sp. JE062]
 gi|211958964|gb|EEA94163.1| Sua5/YciO/YrdC/YwlC family protein [Pseudovibrio sp. JE062]
          Length = 329

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/319 (43%), Positives = 188/319 (58%), Gaps = 3/319 (0%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D+   +  C+ L  G  +AIPTETVYGLA D+ N  A   +YE K RP+ NPLI H+ 
Sbjct: 13  LEDTQIFQDICDALSDGKLVAIPTETVYGLAADATNGKACAGIYEAKGRPSFNPLISHID 72

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
            +   + HA  D  +L LA+ FWPGPLTLVL  L T+ +  L+ A L+T   RVP     
Sbjct: 73  SLEAAQTHAFFDDRALKLAEAFWPGPLTLVLPKLPTSPVSDLAVAGLETIALRVPRSAVM 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L +  G PLA PSAN SG+IS T  + ++ + +   +  IID G + +G+ESTIV++ 
Sbjct: 133 RALCKRTGLPLAAPSANLSGRISGTTAEDVI-NDLKDHLSYIIDSGATPVGVESTIVSLV 191

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            ++   +LRPGGL  E ++  +  +L     + S P +PGML SHYAP S +RL A  V 
Sbjct: 192 GDRPT-LLRPGGLARENVEAVLGEKLVRAGTDDSAPMAPGMLTSHYAPNSHIRLNAEEVT 250

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             EALI FG+V     + A   + LS +  L EAA  LF  ++ AD      IA   IP+
Sbjct: 251 AGEALITFGSVLPDGSDKAAKLVPLSDSEDLTEAAARLFTALRQADLGENGKIAVMPIPH 310

Query: 305 HGLGIAINNRLERAAAPRN 323
           HGLG AIN+RL RAAAPR+
Sbjct: 311 HGLGEAINDRLARAAAPRD 329


>gi|90425777|ref|YP_534147.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisB18]
 gi|90107791|gb|ABD89828.1| translation factor SUA5 [Rhodopseudomonas palustris BisB18]
          Length = 327

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 139/316 (43%), Positives = 186/316 (58%), Gaps = 5/316 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + KA + L  G  +A PTETVYGL  D+ N  AI RLY+ K RP+ NPLI HV+D++ 
Sbjct: 15  DGVAKAVKCLRDGGLVAFPTETVYGLGCDAGNAAAIARLYQAKGRPSFNPLIAHVADLAA 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            ++    D  +  LA  FWPGPLTLV+       +  L+TA L T   RVP     + ++
Sbjct: 75  AERIGRFDGDARRLAASFWPGPLTLVVPKAEHCPVADLATAGLDTVAIRVPLHPVAQAIL 134

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +G  +  PSANRSG +S T   H+    +   I LI++GG   +G+ESTIV   C  +
Sbjct: 135 RGFGGAVVAPSANRSGHVSPTTAAHV-HVDLDGRIQLIVNGGPVSVGVESTIV--ACFDQ 191

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
             +LRPGGL  E ++  +   L   V    T P +PGML SHYAPR++VRL A HV P E
Sbjct: 192 PVLLRPGGLPREKIEAVLGRALAQPVAADPTRPLAPGMLASHYAPRTKVRLEATHVEPGE 251

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           AL+ FG   +  ++   + +NLS+ G L EAA NLF Y++  D  GAS IA   +P HGL
Sbjct: 252 ALLAFGAAALPGVDATTVVMNLSEQGDLAEAAANLFGYLRALDAKGASGIAVMPVPRHGL 311

Query: 308 GIAINNRLERAAAPRN 323
           G AIN+RL RAA PR 
Sbjct: 312 GEAINDRLRRAALPRE 327


>gi|92119409|ref|YP_579138.1| hypothetical protein Nham_4009 [Nitrobacter hamburgensis X14]
 gi|91802303|gb|ABE64678.1| translation factor SUA5 [Nitrobacter hamburgensis X14]
          Length = 328

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 138/304 (45%), Positives = 181/304 (59%), Gaps = 7/304 (2%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D GL +A PTETVYGL  D+ N  A+ RLY  K RPA NPLI HV D++  ++ A  D  
Sbjct: 26  DGGL-VAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVGDLAAAQRIARFDAT 84

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
           +L LA  FWPGPLTLVL       +  L+TA L T   RVP     + ++  +G  +  P
Sbjct: 85  ALALASAFWPGPLTLVLPKAPRCPVADLATAGLDTIALRVPAHPVARDILRGFGGAVVAP 144

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG +S T   H+  S +   I LI+DGG  ++G+ESTIV   C +   +LRPGG+ 
Sbjct: 145 SANLSGHVSPTTAAHV-QSDLAGRIDLIVDGGPVEVGVESTIVG--CFESPTLLRPGGIP 201

Query: 199 IETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
              ++R +   L   Y       P + GML SHYAPR++VRL A  +   EAL+ FG V 
Sbjct: 202 RADIERVLGSALAPHYPGAADGQPLASGMLASHYAPRARVRLNAASLTRGEALLAFGPVD 261

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
           +  I+ A   +NLS+ G LKEAA NLF Y++  D SGA +IA   +P+ GLG AIN+RL 
Sbjct: 262 LAGIDTAAAVMNLSERGDLKEAAANLFGYLRALDASGARTIAVMPVPDDGLGEAINDRLR 321

Query: 317 RAAA 320
           RAAA
Sbjct: 322 RAAA 325


>gi|114704376|ref|ZP_01437284.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal
           [Fulvimarina pelagi HTCC2506]
 gi|114539161|gb|EAU42281.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal
           [Fulvimarina pelagi HTCC2506]
          Length = 319

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 128/298 (42%), Positives = 182/298 (61%), Gaps = 3/298 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           + +PTETVYGLA D+ N  A+ +++ +K+RP+ NPLI HV    +    A    +   L 
Sbjct: 25  VVVPTETVYGLAADATNGEAVAKIFAVKERPSFNPLISHVYGRELAALLAHFGEIEHRLT 84

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
           + FWPGPLT+V  L S   +HPL+TA L T   R P G   +L      PLA PSAN SG
Sbjct: 85  EAFWPGPLTIVAPLRSDGGVHPLATAGLDTIALRQPVGVMAELSARLDRPLAAPSANLSG 144

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204
           ++S T+  H+ ++S+   + LI+DGG + +G+ESTIV  + ++ V +LRPGG+  E +  
Sbjct: 145 RVSPTSAGHV-AASLGDRVSLILDGGTTSVGVESTIVRAESDRIV-LLRPGGVPREAIVE 202

Query: 205 AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI 264
           A  + +E  + +T+   +PG + SHYAP  +VRL A  V P E LI FG  P++   +A 
Sbjct: 203 ATGLPVETIL-QTTKISAPGQMSSHYAPFGRVRLDAASVEPGEWLIAFGPEPVRGESSAS 261

Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             +NLS +G L+EAA NLF  +   D     +IA   IPN G+G AIN+RL+RAAAPR
Sbjct: 262 GVVNLSPSGNLEEAAANLFGLLARLDRPDVPAIAVVPIPNEGIGEAINDRLKRAAAPR 319


>gi|77464318|ref|YP_353822.1| translation factor SUA5 [Rhodobacter sphaeroides 2.4.1]
 gi|77388736|gb|ABA79921.1| translation factor SUA5 [Rhodobacter sphaeroides 2.4.1]
          Length = 312

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 136/315 (43%), Positives = 185/315 (58%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  +A+PTETVYGLA D+R+  A+ R++E K RP  NPLI H+ D+ 
Sbjct: 11  AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLE 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL  L  T + PL +A L T   RVP     ++L
Sbjct: 71  AARRYARFDDEALRLAEAFWPGPLTLVLP-LGDTPVSPLVSAGLSTVAIRVPAHPLAQQL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T  +H+L   +   I  ++DGG   +G+ESTI+    E 
Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTIL-APGEP 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  E L+  +   L         P +PG L SHYAP + VRL A    P E
Sbjct: 188 PL-LLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           + I FG +            NLS +G L EAA NLF++++ AD  G   IA + +P  GL
Sbjct: 246 SWIGFGKLGGPQ--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 297 GRAINDRLRRAAAPR 311


>gi|221640201|ref|YP_002526463.1| translation factor SUA5 [Rhodobacter sphaeroides KD131]
 gi|221160982|gb|ACM01962.1| Translation factor SUA5 [Rhodobacter sphaeroides KD131]
          Length = 312

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/315 (43%), Positives = 185/315 (58%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  +A+PTETVYGLA D+R+  A+ R++E K RP  NPLI H+ D+ 
Sbjct: 11  AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLG 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL  L  T + PL +A L T   RVP     ++L
Sbjct: 71  AARRYARFDDEALRLAEAFWPGPLTLVLP-LGDTPVSPLVSAGLSTVAIRVPAHPLAQQL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T  +H+L   +   I  ++DGG   +G+ESTI+    E 
Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTIL-APGEP 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  E L+  +   L         P +PG L SHYAP + VRL A    P E
Sbjct: 188 PL-LLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           + I FG +            NLS +G L EAA NLF++++ AD  G   IA + +P  GL
Sbjct: 246 SWIGFGKLGGPR--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 297 GRAINDRLRRAAAPR 311


>gi|126463159|ref|YP_001044273.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104823|gb|ABN77501.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17029]
          Length = 312

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 136/315 (43%), Positives = 184/315 (58%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  +A+PTETVYGLA D+R+  A+ R++E K RP  NPLI H+ D+ 
Sbjct: 11  AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLG 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL  L  T + PL +A L T   RVP     ++L
Sbjct: 71  AARRYARFDDEALRLAEAFWPGPLTLVLP-LGDTPVSPLVSAGLSTVAIRVPAHPLAQQL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T   H+L   +   I  ++DGG   +G+ESTI+    E 
Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPDHVL-DGLSGRIEAVLDGGTCGVGVESTIL-APGEP 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  E L+  +   L         P +PG L SHYAP + VRL A    P E
Sbjct: 188 PL-LLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           + I FG +            NLS +G L EAA NLF++++ AD  G   IA + +P  GL
Sbjct: 246 SWIGFGKLGGPR--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 297 GRAINDRLRRAAAPR 311


>gi|149913215|ref|ZP_01901749.1| Sua5/YciO/YrdC family protein [Roseobacter sp. AzwK-3b]
 gi|149813621|gb|EDM73447.1| Sua5/YciO/YrdC family protein [Roseobacter sp. AzwK-3b]
          Length = 320

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 138/323 (42%), Positives = 184/323 (56%), Gaps = 13/323 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D+    +A E L  G  +A PTETVYGL  D+RN  A+  ++E K RP  NPLI HV 
Sbjct: 9   LPDAQGYARAAEILHEGGRVAFPTETVYGLGGDARNDMAVAGIFEAKGRPRFNPLIVHVE 68

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
                + + +   L+  LA+ FWPGPLT+VL L   T + PL TA L T   RVP     
Sbjct: 69  SAQAAQAYVAWSDLAERLARAFWPGPLTMVLPLKPDTGLSPLVTAELPTLAIRVPAHPVA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L+ T+G P+A PSAN SG+IS T   H+L + +   I  ++DGG   +G+ESTI+ + 
Sbjct: 129 QALLRTFGGPVAAPSANPSGRISPTLAAHVL-AGLDGRIEAVLDGGACDVGVESTILGL- 186

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            +  V +LRPGG+  E ++  I   + +   E S   +PG L SHYAP + VRL A    
Sbjct: 187 ADGPV-LLRPGGIAAEEIEAVIGAPVGHHA-EGSAISAPGQLASHYAPGASVRLNAETRQ 244

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             E L+ FG V           LNLS  G L+EAA NLF ++   D  GA +IA S IP+
Sbjct: 245 DGELLLGFGPV--------ACDLNLSPKGDLREAAANLFGHLHALDGQGADAIAVSPIPD 296

Query: 305 HGLGIAINNRLERAAAPRNQSQR 327
            GLG AIN+RL RAAAPR  + R
Sbjct: 297 TGLGRAINDRLRRAAAPRPGTDR 319


>gi|332559208|ref|ZP_08413530.1| translation factor SUA5 [Rhodobacter sphaeroides WS8N]
 gi|332276920|gb|EGJ22235.1| translation factor SUA5 [Rhodobacter sphaeroides WS8N]
          Length = 312

 Score =  235 bits (599), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 135/315 (42%), Positives = 185/315 (58%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  +A+PTETVYGLA D+R+  A+ R++E K RP  NPLI H+ D+ 
Sbjct: 11  AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLE 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL  L  T + PL +A L T   R+P     ++L
Sbjct: 71  AARRYARFDDEALRLAEAFWPGPLTLVLP-LGDTPVSPLVSAGLSTVAIRMPAHPLAQQL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T  +H+L   +   I  ++DGG   +G+ESTI+    E 
Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTIL-APGEP 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  E L+  +   L         P +PG L SHYAP + VRL A    P E
Sbjct: 188 PL-LLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           + I FG +            NLS +G L EAA NLF++++ AD  G   IA + +P  GL
Sbjct: 246 SWIGFGKLGGPR--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 297 GRAINDRLRRAAAPR 311


>gi|119383189|ref|YP_914245.1| Sua5/YciO/YrdC/YwlC family protein [Paracoccus denitrificans
           PD1222]
 gi|119372956|gb|ABL68549.1| translation factor SUA5 [Paracoccus denitrificans PD1222]
          Length = 316

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/326 (43%), Positives = 185/326 (56%), Gaps = 14/326 (4%)

Query: 1   MQIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           MQ + +  D   +R A E L  G P+AIPTETVYGLA D+RNP A+ R+YE K RP+ NP
Sbjct: 1   MQTLILGHDPRGVRTAAELLAQGEPVAIPTETVYGLAGDARNPRAVARIYEAKGRPSFNP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI HV D++   + A  D  +L LA+ FWPG LTLVL L     I  L TA L T   RV
Sbjct: 61  LIVHVPDLAAAGRIADFDDAALALARAFWPGALTLVLPLRPDAGIASLVTAGLDTVAIRV 120

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS--SSICKEIPLIIDGGISKIGL 176
           P     ++++  +G PLA PSAN SG+IS T   H     + +   I  ++D G   +G+
Sbjct: 121 PAHPAAQEVLRVFGGPLAAPSANPSGRISPTTAAHAADPETGLGGRIAAVLDAGACPVGV 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ESTIV    + +  +LRPGG+  E ++  +   L     +   P +PG L SHYAPR+ +
Sbjct: 181 ESTIVG-WVDGQPALLRPGGVAAEAIEAVLGRPLARPEADPDAPTAPGQLTSHYAPRASL 239

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           RL A    P E LI FG  P+         + LS+TG L EAA  LF+ +  AD      
Sbjct: 240 RLNADAARPGEVLIGFG--PVAG------EMTLSETGDLTEAAARLFDLLHRADAE-ERP 290

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322
           IA + +P  GLG AIN+RL RAAAPR
Sbjct: 291 IAVAPVPERGLGAAINDRLRRAAAPR 316


>gi|75676880|ref|YP_319301.1| Sua5/YciO/YrdC/YwlC [Nitrobacter winogradskyi Nb-255]
 gi|74421750|gb|ABA05949.1| translation factor SUA5 [Nitrobacter winogradskyi Nb-255]
          Length = 328

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/302 (44%), Positives = 185/302 (61%), Gaps = 6/302 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ N  A+ RLY  K RPA NPLI HVSD++  ++ A  D  +L L 
Sbjct: 30  VAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVSDLAAAQRIARFDAAALALT 89

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLVL  ++   +  L+TA+L T   RVP     + ++  +G  +  PSAN S
Sbjct: 90  EAFWPGPLTLVLPKVARCPVADLATASLDTIALRVPAHPVARAILRGFGGAVVAPSANLS 149

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G +S T   H+    +   I LI+DGG  ++G+ESTIV   C  +  +LRPGG+    ++
Sbjct: 150 GHVSPTTAAHV-RHDLEGRIDLIVDGGPVEVGIESTIVG--CFDRPTLLRPGGISRADIE 206

Query: 204 RAISVELEYCVDETST--PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           R +   L       +   P++ GML SHYAPR+++RL A ++ P EAL+ FG V    I+
Sbjct: 207 RVLGGPLVSPAPAAADGRPRASGMLASHYAPRARMRLNAANLAPGEALLAFGPVDPPGID 266

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            A+  +NLS+ G LKEAA +LF  ++  D SGA +IA + IP  GLG AIN+RL RAAAP
Sbjct: 267 TAVAVMNLSERGDLKEAAAHLFGCLRALDASGARTIAVTPIPEDGLGEAINDRLRRAAAP 326

Query: 322 RN 323
           + 
Sbjct: 327 KG 328


>gi|299134711|ref|ZP_07027903.1| Sua5/YciO/YrdC/YwlC family protein [Afipia sp. 1NLS2]
 gi|298590521|gb|EFI50724.1| Sua5/YciO/YrdC/YwlC family protein [Afipia sp. 1NLS2]
          Length = 326

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/310 (43%), Positives = 181/310 (58%), Gaps = 10/310 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L AG  +A PTETVYGL  D  N  AI RLYE K RP+ NPLI H+  +   ++ A  
Sbjct: 21  DCLAAGGLVAFPTETVYGLGADGTNGKAIARLYEAKGRPSFNPLIAHLPTLEAAQRVAIF 80

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           +  +L LA+ FWPGPLTLVL       +  L+TA L T   R+P     + +++  G P+
Sbjct: 81  NETALKLARAFWPGPLTLVLPKAPGCPVSELATAGLDTVAVRIPAHPVAQAILQALGRPI 140

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSANRSG +S T   H+L   +   I LI+DGG   +G+ESTIV   C     +LRPG
Sbjct: 141 VAPSANRSGHVSPTTAAHVL-HDLDGRIDLIVDGGPVSVGVESTIVG--CSGAPVLLRPG 197

Query: 196 GLEIETLKRAISVELEY--CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           G     ++  + V L     +    +P +PGML+SHYAP + VRL A  +N  EAL+ FG
Sbjct: 198 GTPRADIEAVLGVPLGRLETIPGHDSPLAPGMLESHYAPAAAVRLGATALNADEALLAFG 257

Query: 254 N-VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
             +P    +    +LNLS  G L EAA NLF +++  D++GA +IA   IP HGLG AIN
Sbjct: 258 EALPGARPQR---TLNLSPRGDLIEAAANLFGHLRALDETGAQAIAVMPIPTHGLGEAIN 314

Query: 313 NRLERAAAPR 322
           +RL RAAA R
Sbjct: 315 DRLRRAAADR 324


>gi|146278497|ref|YP_001168656.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556738|gb|ABP71351.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17025]
          Length = 312

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/310 (44%), Positives = 178/310 (57%), Gaps = 15/310 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
            A   L  G  +A+PTETVYGLA D+RN  A+ R++E K RP  NPLI HV D+   +++
Sbjct: 16  DAARILAGGGLVALPTETVYGLAGDARNDRAVARIFEAKGRPQFNPLIVHVPDLEAARRY 75

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
           A  D  +L LA+ FWPGPLTLVL  L    + PL +A L T   RVP     ++L+  +G
Sbjct: 76  ARFDAEALRLAETFWPGPLTLVLP-LEGEPVSPLVSAGLPTVAIRVPAHPLAQRLMRAFG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PLA PSAN SG++S T  +H+L   +   I  ++DGG  ++G+ESTI  V       +L
Sbjct: 135 GPLAAPSANPSGRVSPTRPEHVL-EGLAGRIEAVLDGGACEVGVESTI--VAPGDPPLLL 191

Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           RPGGL +E L+  I   L      +  P +PG L SHYAP + VRL A    P E  I F
Sbjct: 192 RPGGLPVEALEDCIGEPL-ITGGSSERPSAPGQLSSHYAPDAPVRLGATEAAPDETWIGF 250

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
           G             LNLS  G L EAA NLF+ ++ AD  G   IA + +P  GLG AIN
Sbjct: 251 GRT--------GGPLNLSPGGDLVEAAANLFHLLRQADRLG-RPIAVAPVPERGLGRAIN 301

Query: 313 NRLERAAAPR 322
           +RL RAA+PR
Sbjct: 302 DRLRRAASPR 311


>gi|209886040|ref|YP_002289897.1| Sua5/YciO/YrdC/YwlC family protein [Oligotropha carboxidovorans
           OM5]
 gi|209874236|gb|ACI94032.1| Sua5/YciO/YrdC/YwlC family protein [Oligotropha carboxidovorans
           OM5]
          Length = 322

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/316 (43%), Positives = 182/316 (57%), Gaps = 7/316 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A R A E L AG  +A PTETVYGL  D  N +AI RLYE K RP+ NPLI HV  + 
Sbjct: 9   AEATRPAAECLAAGGLVAFPTETVYGLGADGTNGSAIARLYEAKGRPSFNPLIAHVPTLE 68

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
             ++ A  +  +  LA+ FWPGPLTLVL   +   +  L+TA L+T   R+P     + +
Sbjct: 69  AAQRIARFNDTAFKLARAFWPGPLTLVLPKTADCPVSDLATAGLETVAVRIPAHPVAQAI 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+  PSANRSG +S T   H+    +   I LI+DGG  ++G+ESTIV   C  
Sbjct: 129 LQALGRPIVAPSANRSGHVSPTTAAHV-RDDLDGRIDLIVDGGPVQVGVESTIVG--CTG 185

Query: 188 KVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
              +LRPGG     ++  +   L        + P +PGML SHYAP + VRL A  +   
Sbjct: 186 TPILLRPGGTPRAAIEAVLGTPLARQPAPVQNGPLAPGMLASHYAPSANVRLNATELRNG 245

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EAL+ FG  P      A  +LNLS  G L EAA NLF++++  D++GA +IA   IP  G
Sbjct: 246 EALLAFG--PPLPGAPAGRTLNLSPRGDLIEAAANLFSHLRALDETGARTIAVMPIPTAG 303

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL RAAA R
Sbjct: 304 LGEAINDRLRRAAAER 319


>gi|154247193|ref|YP_001418151.1| Sua5/YciO/YrdC/YwlC family protein [Xanthobacter autotrophicus Py2]
 gi|154161278|gb|ABS68494.1| Sua5/YciO/YrdC/YwlC family protein [Xanthobacter autotrophicus Py2]
          Length = 345

 Score =  232 bits (592), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 129/316 (40%), Positives = 180/316 (56%), Gaps = 4/316 (1%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++      A+ +A   L  G  +A PTETVYGL  D+ NP A+  LY  K RPA NPLI
Sbjct: 13  RLLPAAAPGAVEEAARLLSGGGLVAFPTETVYGLGADAANPQAVAALYAAKGRPAFNPLI 72

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            H  D +  ++  S +  +  LA+ FWPGPLTLV+       +  L+ A L T   RVP 
Sbjct: 73  AHTKDAASARRLGSFNRAANILAERFWPGPLTLVVPYAGGDGVCELARAGLDTVALRVPA 132

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G    LI  +G  +  PSANRSG +S T   H++   +   I  ++DGG + +G+ESTI
Sbjct: 133 HGDAAALIAAFGGAVVAPSANRSGHVSPTTAAHVMDD-LSGRIDAVVDGGPTPVGVESTI 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLR 239
           ++V  E  V +LRPGGL  E ++ A+   +   V  + + P +PG L SHYAPR+ +RL 
Sbjct: 192 LDVTGEVPV-LLRPGGLAREEIEAALGHPIARPVATDDARPLAPGRLASHYAPRAALRLD 250

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A HV P EAL+ F  +      NA   L+LS +G L EAA  L+  ++  D SGAS+IA 
Sbjct: 251 ATHVAPGEALLTFAGMAPDGTPNAGSVLDLSPSGDLTEAAARLYGALRALDASGASAIAV 310

Query: 300 SSIPNHGLGIAINNRL 315
             +P  GLG AI++RL
Sbjct: 311 VPLPRTGLGEAISDRL 326


>gi|163853503|ref|YP_001641546.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium extorquens
           PA1]
 gi|254563432|ref|YP_003070527.1| hypothetical protein METDI5100 [Methylobacterium extorquens DM4]
 gi|163665108|gb|ABY32475.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium extorquens
           PA1]
 gi|254270710|emb|CAX26715.1| conserved hypothetical protein, Sua5/YciO/YrdC domain
           [Methylobacterium extorquens DM4]
          Length = 329

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 170/299 (56%), Gaps = 3/299 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+           D  +L LA
Sbjct: 33  VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           K FWPGPLTLV+       +  L+ A L +   RVP     + L+E  G P+A PSANRS
Sbjct: 93  KEFWPGPLTLVVPAAPGGSVCDLARAGLDSVALRVPAHDIARGLLEQVGRPVAAPSANRS 152

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T+  H+L+  +   I  ++DGG   +G+EST+V        R+LRPGG+  E L 
Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVAC-LGGPPRLLRPGGVTREALA 210

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
             +    E   D  S P  PG+L SHYAPR+ VRL A  + P EA++ FG      ++ A
Sbjct: 211 AVLGFAPEAAGDPGSRPVGPGLLASHYAPRAGVRLEARTIEPSEAVLLFGAFRPAGLDRA 270

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
               +LS+ G   EAA  LF  ++  D SGA +IA   +P  GLG AIN+RL RAAAPR
Sbjct: 271 AAVESLSERGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329


>gi|86748257|ref|YP_484753.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris HaA2]
 gi|86571285|gb|ABD05842.1| translation factor SUA5 [Rhodopseudomonas palustris HaA2]
          Length = 329

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 136/309 (44%), Positives = 176/309 (56%), Gaps = 7/309 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PTETVYGL  D+  P A+ RLY  K RP+ NPLI HV+++   +K A  D 
Sbjct: 24  LRGGGLIGFPTETVYGLGADAAAPAAVARLYAAKGRPSFNPLIAHVANLDAARKIARFDS 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +  LA  FWPGPLTLVL       +  L+TA L +   R+P     + ++  +G  +  
Sbjct: 84  RASALAAAFWPGPLTLVLPKAEECTVCDLATAGLDSVAVRIPAHPVAQAILRAFGGAVVA 143

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG +S T   H+  + +   I LI+DGG   +G+ESTIV+  C     +LRPGG+
Sbjct: 144 PSANRSGHVSPTTAAHV-RADLDGRIDLIVDGGAVDVGVESTIVS--CLGAPALLRPGGV 200

Query: 198 EIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
             E ++R +   L            P +PGML SHYAPR+QVRL A  V P EAL+ FG 
Sbjct: 201 PREAIERLLGCALADPSPAAAGEHAPLAPGMLASHYAPRAQVRLDAGEVRPGEALLAFGP 260

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
             +   E A  + NLS    L EAA NLF +++  D  GA  IA   IP HGLG AIN+R
Sbjct: 261 AALPGAETACATRNLSPAADLTEAAANLFGFLRELDAGGARVIAVMPIPPHGLGEAINDR 320

Query: 315 LERAAAPRN 323
           L RAAAPR+
Sbjct: 321 LRRAAAPRD 329


>gi|240140923|ref|YP_002965403.1| hypothetical protein MexAM1_META1p4495 [Methylobacterium extorquens
           AM1]
 gi|240010900|gb|ACS42126.1| conserved hypothetical protein with Sua5/YciO/YrdC domain
           [Methylobacterium extorquens AM1]
          Length = 329

 Score =  231 bits (590), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 170/299 (56%), Gaps = 3/299 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+           D  +L LA
Sbjct: 33  VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           K FWPGPLTLV+       +  L+ A L +   RVP     + L+E  G P+A PSANRS
Sbjct: 93  KKFWPGPLTLVVPAAPGGSVCDLARAGLDSVALRVPAHDIARALLERVGRPVAAPSANRS 152

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T+  H+L+  +   I  ++DGG   +G+EST+V        ++LRPGG+  E L 
Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLGGPP-QLLRPGGVTREALA 210

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
             +    E   D  S P  PG+L SHYAPR+ VRL A  V P EA++ FG      ++ A
Sbjct: 211 AVLGFAPEAASDPGSRPVGPGLLASHYAPRAGVRLEARTVEPSEAVLLFGAFRPAGLDRA 270

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
               +LS+ G   EAA  LF  ++  D SGA +IA   +P  GLG AIN+RL RAAAPR
Sbjct: 271 AAVESLSERGDAAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329


>gi|148553004|ref|YP_001260586.1| translation factor SUA5 [Sphingomonas wittichii RW1]
 gi|148498194|gb|ABQ66448.1| translation factor SUA5 [Sphingomonas wittichii RW1]
          Length = 313

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/316 (42%), Positives = 192/316 (60%), Gaps = 13/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   +  GLP+ +PTETVYGLA D+ +  A+  +Y  K RP+ NPLI HV+D+
Sbjct: 10  DPTGIAEAAALIARGLPVGVPTETVYGLAGDATSGEAVAAIYAAKGRPSFNPLIVHVTDL 69

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +M  + A + PL+  LA+ FWPGPLT+VL     + I  L+TA L +   R+P     + 
Sbjct: 70  AMAGRVAILPPLARRLAERFWPGPLTMVLPAAPGSPIASLTTAGLPSVAVRMPAHPAIRA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PLA PSAN SG IS T  +H+ + S+   I L++D G + +G+ESTIV V+ +
Sbjct: 130 LILASGRPLAAPSANASGSISATRAEHV-ARSLAGRITLVLDDGPTAVGIESTIVAVETD 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            ++R+LRPG + +E L  A  V +E   D   + ++PG + SHYAP   +RL A      
Sbjct: 189 -RLRLLRPGAIIVEMLAEAAGVAVERRGD--GSIEAPGQMASHYAPSKPLRLNAERAKAG 245

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E LI FG V           + LS +G+L EAA  LF+ +  AD S A++IA + +P+ G
Sbjct: 246 EYLIGFGAV--------AGDVTLSASGRLDEAAARLFDLLHAADQSDAAAIAVAPVPSDG 297

Query: 307 LGIAINNRLERAAAPR 322
           LG+AIN+RL+RAAAPR
Sbjct: 298 LGLAINDRLQRAAAPR 313


>gi|182678988|ref|YP_001833134.1| Sua5/YciO/YrdC/YwlC family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634871|gb|ACB95645.1| Sua5/YciO/YrdC/YwlC family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 326

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/318 (41%), Positives = 190/318 (59%), Gaps = 9/318 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ + KA   L  G  +A PTETVYGL  D+    A+ ++Y  K+RP+ NPLI HV+ ++
Sbjct: 12  TSEITKAASILRQGGLVAFPTETVYGLGADATRDEAVAKIYAAKERPSFNPLIAHVASLA 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             + H     ++L LA  FWPGPLTLV+ +   + I  L+ A L +   RVP     + L
Sbjct: 72  EAQCHGIFSDMALRLAACFWPGPLTLVVPVSPESKICALARAGLDSVALRVPAHPIARAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           IE  G PLA PSANRSG++S  + +H+    +   + LI+DGG   +G+ESTI++   E 
Sbjct: 132 IEATGLPLAAPSANRSGRVSPVSAEHV-REDLGDRVDLILDGGRCPVGVESTIIDC-LEA 189

Query: 188 KVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           + R+LRPGG+  E ++  +   LE    +  TS  + PG+L SHYAPR++VRL A  +  
Sbjct: 190 QPRLLRPGGIPREAIETCLGRILEAPPRLTATSPLRGPGLLASHYAPRAKVRLDATDLQK 249

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA + FG     +   A  +L+LS +G L EAA +LF Y++  D  G  +IA + IP  
Sbjct: 250 GEAGLDFGG----HFAKAAHTLDLSPSGDLTEAAAHLFTYLRHLDALGLETIAVAPIPET 305

Query: 306 GLGIAINNRLERAAAPRN 323
           GLG AIN+RL RAAAPR+
Sbjct: 306 GLGEAINDRLRRAAAPRH 323


>gi|218532361|ref|YP_002423177.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium
           chloromethanicum CM4]
 gi|218524664|gb|ACK85249.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium
           chloromethanicum CM4]
          Length = 329

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/299 (42%), Positives = 171/299 (57%), Gaps = 3/299 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+           D  +L LA
Sbjct: 33  VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           K FWPGPLTLV+       +  L+ A L +   RVP     + L+E  G P+A PSANRS
Sbjct: 93  KKFWPGPLTLVVPAAPDCSVCDLARAGLDSVALRVPAHDIARALLERVGRPVAAPSANRS 152

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T+  H+L+  +   I  ++DGG   +G+EST+V        R+LRPGG+  E L 
Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLGGPP-RLLRPGGVTREALA 210

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
             +    E   D  S P  PG+L SHYAPR+ VRL A  + P EA++ FG      +++A
Sbjct: 211 AVLGFAPEAAGDPGSRPVGPGLLASHYAPRAGVRLEARIIEPSEAVLLFGAFRPAGLDHA 270

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
               +LS+ G   EAA  LF  ++  D SGA +IA   +P  GLG AIN+RL RAAAPR
Sbjct: 271 AAVESLSERGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329


>gi|85703463|ref|ZP_01034567.1| Sua5/YciO/YrdC family protein [Roseovarius sp. 217]
 gi|85672391|gb|EAQ27248.1| Sua5/YciO/YrdC family protein [Roseovarius sp. 217]
          Length = 313

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/324 (43%), Positives = 182/324 (56%), Gaps = 14/324 (4%)

Query: 1   MQIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           MQ  S++ D      A E   AG  +A PTETVYGL  D+RN  A+ R++E K RP  NP
Sbjct: 1   MQTRSLSPDPAGFASAAEIWRAGGLVAFPTETVYGLGADARNDLAVARIFEAKGRPRFNP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI HV   +M + +      +  LA  FWPGPLTLVL +L    +  L TA+L T   RV
Sbjct: 61  LIVHVESAAMAQTYVEWSDAAEILASAFWPGPLTLVLPILPGCGLSRLVTADLPTLAIRV 120

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+  +G P+A PSAN SG+IS T+ +H+L + +   I  ++DG    +G+ES
Sbjct: 121 PAHPIAHALLAEFGGPVAAPSANPSGRISPTSAEHVL-AGLSGRIEAVLDGEACPVGVES 179

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV +  E    +LRPGG+  E L+ A+ V LE        P +PG + SHYAP  +VRL
Sbjct: 180 TIVGLAGEPT--LLRPGGIPGEVLEAALGVHLE-LYQTGDAPVAPGQMHSHYAPGVRVRL 236

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
            A      E L+ FG  PI         LNLS +G L EAA NLF ++   D    + IA
Sbjct: 237 NATDRQEGEVLLGFG--PIDA------DLNLSPSGDLVEAAANLFGHLHALDALDVAGIA 288

Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322
            S IP+ GLG AIN+RL RAAAPR
Sbjct: 289 VSPIPDIGLGRAINDRLRRAAAPR 312


>gi|85714355|ref|ZP_01045343.1| Sua5/YciO/YrdC/YwlC [Nitrobacter sp. Nb-311A]
 gi|85698802|gb|EAQ36671.1| Sua5/YciO/YrdC/YwlC [Nitrobacter sp. Nb-311A]
          Length = 360

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/309 (43%), Positives = 185/309 (59%), Gaps = 11/309 (3%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D GL +A PTETVYGL  D+ N  AI RLY  K RPA NPLI HVSD++  ++ A  + +
Sbjct: 58  DGGL-VAFPTETVYGLGADAANAEAIARLYRAKGRPAFNPLIAHVSDLAAAQRIARFNAI 116

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
           +L LA  FWPGPLTLVL   +   +  L+TA L T   RVP     + ++  +G  +  P
Sbjct: 117 ALALADAFWPGPLTLVLPKSAQCPVADLATAGLDTIALRVPAHPVARAILRGFGGAVVAP 176

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG +S T   H+  S +   I LI+DGG  ++G+ESTIV   C  +  +LRPGG+ 
Sbjct: 177 SANLSGHVSPTTAAHV-QSDLAGRIDLIVDGGPVEVGIESTIVG--CFDRPTLLRPGGIS 233

Query: 199 IETLKRAISVELEY----CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
              ++R +   L        D    P++ GML SHYAPR++VRL A+++   EAL+ FG 
Sbjct: 234 RADIERVLGRTLASPDPGAAD--GQPRASGMLASHYAPRAKVRLNAVNLARGEALLAFGP 291

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
             +  I+ A+  +NLS+   L+EAA NLF  ++  D SG  +IA   +P+ GLG AIN+R
Sbjct: 292 ADLSGIDAAVAVMNLSERRDLEEAAANLFGCLRALDASGVRTIAVMPVPDEGLGEAINDR 351

Query: 315 LERAAAPRN 323
           L RAA P+ 
Sbjct: 352 LRRAAVPQG 360


>gi|297184204|gb|ADI20322.1| putative translation factor (sua5) [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 318

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/323 (41%), Positives = 186/323 (57%), Gaps = 22/323 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S+    A E L +G  +A PTETVYGL  ++ N  A+  +Y  KKRP  NPLI HV ++
Sbjct: 9   NSDGYAYASEILKSGGLVAFPTETVYGLGANALNSDAVAEIYTAKKRPNFNPLIVHVLNL 68

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              +K A  +  +L LA  FWPGPLT+V  + + T++  L TA L T   RVP     +K
Sbjct: 69  ETAQKFAVFNKDTLLLANKFWPGPLTVVAPIKNKTNLSKLITAGLDTVAIRVPAHPVARK 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV---NV 183
           L+ET+  P+A PSAN SG IS T+  H+  S +   I  I++GG   +GLESTI+   N 
Sbjct: 129 LLETFNGPIAAPSANPSGSISSTSAAHV-KSGLGGRIQAILNGGKCDVGLESTIILSNNG 187

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           QC     ILR GG+  + ++  +   +      + T  SPG L SHYAP + +R+ AI  
Sbjct: 188 QC----NILRSGGISEKEIEEVLGYRISLN-QNSDTLISPGQLSSHYAPNANLRMNAIKA 242

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAF 299
           +  E +I FG+V        +  LNLS  G L EAA NLF Y+ +AD+     G + IA 
Sbjct: 243 DEDEYMIGFGDV--------VGQLNLSSQGNLIEAATNLFAYLHMADEDAITLGKTKIAI 294

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
           + IP HGLG+AIN+RL RA+ P+
Sbjct: 295 AKIPMHGLGVAINDRLTRASTPK 317


>gi|84684410|ref|ZP_01012311.1| Putative translation factor [Maritimibacter alkaliphilus HTCC2654]
 gi|84667389|gb|EAQ13858.1| Putative translation factor [Rhodobacterales bacterium HTCC2654]
          Length = 317

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 133/319 (41%), Positives = 183/319 (57%), Gaps = 13/319 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D   + +A E L AG  ++ PTETVYGL   + +  A+ R++E K RP  NPLI HV 
Sbjct: 11  VPDDTGIARAAEVLLAGGLVSFPTETVYGLGGVATDDIAVARIFEAKGRPHFNPLIAHVP 70

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           D+  V K A +   +  LA+ FWPGPLTLVL + +   + PL +A L T   RVP     
Sbjct: 71  DLEAVSKIAELSERAHDLAQAFWPGPLTLVLPMRADAGLSPLVSAGLTTVAVRVPDHPLA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +KL+   G P+  PSAN SG+IS T   H+L + +   I  ++DGG   +G+ESTIV   
Sbjct: 131 QKLLRAVGRPVVAPSANPSGRISPTEAAHVL-AGLGGRIEAVLDGGPCSVGVESTIVGFN 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            E    +LRPGGL  E ++ A+   L     E +   +PG L SHYAP ++VRL A    
Sbjct: 190 PEPV--LLRPGGLPAEAIEDALGAPLARRA-EGAGINAPGQLASHYAPDARVRLDAEAAR 246

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
           P E ++ FG        +A   +NLS +G L EAA NLF  +   D +G + IA + +P+
Sbjct: 247 PGERMLGFG--------DADGEMNLSPSGDLVEAAANLFRMLHALDAAGDAPIAVAPVPD 298

Query: 305 HGLGIAINNRLERAAAPRN 323
            GLG AIN+RL RAAAPR+
Sbjct: 299 TGLGRAINDRLRRAAAPRD 317


>gi|114771324|ref|ZP_01448744.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HTCC2255]
 gi|114548249|gb|EAU51136.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HTCC2255]
          Length = 318

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/323 (41%), Positives = 187/323 (57%), Gaps = 22/323 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S+    A E L +G  +A PTETVYGL  ++ N  A+  +Y  KKRP  NPLI HV ++
Sbjct: 9   NSDGYAYASEILKSGGLVAFPTETVYGLGANALNSDAVAEIYTAKKRPNFNPLIVHVLNL 68

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              +K A  +  +L LA  FWPGPLT+V  + + T++  L TA L T   RVP     +K
Sbjct: 69  ETAQKFAVFNKDTLLLANKFWPGPLTVVAPIKNKTNLSRLITAGLDTVAIRVPAHPVARK 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV---NV 183
           L+ET+  P+A PSAN SG IS T+  H+  S +   I  I++GG   +GLESTI+   N 
Sbjct: 129 LLETFNGPIAAPSANPSGSISSTSAAHV-KSGLGGRIQAILNGGKCDVGLESTIILSNNG 187

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           QC     ILR GG+  + ++  +  ++      + T  SPG L SHYAP + +R+ AI  
Sbjct: 188 QC----NILRSGGISEKEIEEVLGYKISLN-QNSDTLISPGQLSSHYAPNANLRMNAIKA 242

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAF 299
           +  E +I FG+V        +  LNLS  G L EAA NLF Y+ +AD+     G + IA 
Sbjct: 243 DEDEYMIGFGDV--------VGQLNLSSQGNLIEAATNLFAYLHMADEDAITLGKTKIAI 294

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
           + IP HGLG+AIN+RL RA+ P+
Sbjct: 295 AKIPMHGLGVAINDRLTRASTPK 317


>gi|56551895|ref|YP_162734.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543469|gb|AAV89623.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 329

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/325 (41%), Positives = 189/325 (58%), Gaps = 16/325 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  + KA + +  G P+ +PTETVYGLA D+ +  A+ R+Y+ K RP+ NPLI H++ I
Sbjct: 16  DSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIVHIAHI 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
               +    +  +L LA+ FWPG LT+VL L     I  + TA L T   R+P     ++
Sbjct: 76  EQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSHPVMRQ 135

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+ +GHPLA PSAN+SG IS T   H+   S+  +I  ++DGGI+  GLESTI+ V  +
Sbjct: 136 VIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTIIYVGAD 194

Query: 187 KKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            ++++LRPG +  E L ++  + + EY  D    P +PG L SHYAP   VRL       
Sbjct: 195 -EIKLLRPGPITSEELAQSSPLPITEYKAD-GQNPVAPGQLVSHYAPSQPVRLNISQKEA 252

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            E LI FG++   +        NLS +G L EAA +LF+ +   + S    IA + IP  
Sbjct: 253 DEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAPIPLE 304

Query: 306 GLGIAINNRLERAAAPR---NQSQR 327
           G+G AIN+RL RAAAPR   N SQR
Sbjct: 305 GIGKAINDRLGRAAAPRDEQNTSQR 329


>gi|304393470|ref|ZP_07375398.1| Sua5/YciO/YrdC family protein [Ahrensia sp. R2A130]
 gi|303294477|gb|EFL88849.1| Sua5/YciO/YrdC family protein [Ahrensia sp. R2A130]
          Length = 337

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 180/315 (57%), Gaps = 10/315 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T  +   +A   L  G  + +PTETVYGLA D+ N TA+ ++Y  K RP  NPLI HV 
Sbjct: 17  MTTGDGFEQAARILREGGLLGVPTETVYGLAADACNATAVAKIYAAKGRPDFNPLIVHVD 76

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            + M ++ A  DPLS  LA+ FWPGPLTLVL L     + P  TA L T   R P G   
Sbjct: 77  SLKMAEELAVFDPLSRRLAEEFWPGPLTLVLPLRGDAALAPSVTAGLGTVALRQPIGVLA 136

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L  + G  +A PSAN SG+IS T  +H+ +  +   + L++DGG   +G+ESTIV    
Sbjct: 137 ELASSLGTGIAAPSANSSGRISPTTAQHV-ADDLEDRVDLVLDGGTCAVGVESTIVKC-T 194

Query: 186 EKKVRILRPGGLEIETLKR-AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
             K+ ILR GG+  + L   A   E E    ++   ++PG L +HYAP   +R+ A  V+
Sbjct: 195 NGKINILRTGGITADQLTEIAPLAEPE----KSGKIEAPGQLLAHYAPDVPLRMNAHEVD 250

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             E  + FG  P   + +A  SLNLS TG + EAA NLF  MK  D +G + IA   +P 
Sbjct: 251 EGEGQLAFGPAP---LHSAGPSLNLSPTGDVAEAARNLFAMMKTLDSAGVAGIAVQPVPE 307

Query: 305 HGLGIAINNRLERAA 319
           +G+G AIN+RL RAA
Sbjct: 308 NGIGAAINDRLRRAA 322


>gi|329114409|ref|ZP_08243171.1| Putative protein YwlC [Acetobacter pomorum DM001]
 gi|326696485|gb|EGE48164.1| Putative protein YwlC [Acetobacter pomorum DM001]
          Length = 386

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 127/319 (39%), Positives = 181/319 (56%), Gaps = 9/319 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ L+ A   L  G  +A  TETVYGL  D+  P  + R++E K RP  NPLI H +D  
Sbjct: 62  SSGLQTAARILREGGLVAFGTETVYGLGGDATQPQTVARIFEAKNRPRFNPLISHFADAQ 121

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
                 + +PL+  LA +FWPGPLTL+L     + +  L+   L T   RVP G T + L
Sbjct: 122 AAFTQVTANPLAHKLAHMFWPGPLTLILPRAPHSTVSDLAADGLPTLAVRVPKGQTVQAL 181

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++    P+A PSANRSG+IS ++  H+L   +   I  ++D G  ++G+EST++++   +
Sbjct: 182 LKLVQRPIAAPSANRSGRISPSDAAHVL-EELDGRIDAVLDSGPCQVGVESTVLDISNPE 240

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           +  +LRPGG+ +E L+           +  + P SPG + SHYAP   VRL A+ V P E
Sbjct: 241 RPTLLRPGGITLEALQAVCGTIFMPETEVDAAPASPGRMLSHYAPHLPVRLNAVDVAPDE 300

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIP 303
           AL+ FGN          +S NLS++G L+EAA  LF  ++  D  G +     IA   IP
Sbjct: 301 ALLAFGNT---QPSGTPLSWNLSESGNLEEAAARLFTGLRTLDKQGQNLHLRGIAVQPIP 357

Query: 304 NHGLGIAINNRLERAAAPR 322
            HGLG+AI +RL RAAAPR
Sbjct: 358 PHGLGLAIQDRLNRAAAPR 376


>gi|260752549|ref|YP_003225442.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551912|gb|ACV74858.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 329

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 130/319 (40%), Positives = 187/319 (58%), Gaps = 13/319 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  + KA + +  G P+ +PTETVYGLA D+ +  A+ R+Y+ K RP+ NPLI H++ I
Sbjct: 16  DSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIVHIAHI 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
               +    +  +L LA+ FWPG LT+VL L     I  + TA L T   R+P     ++
Sbjct: 76  EQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSHPVMRQ 135

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+ +GHPLA PSAN+SG IS T   H+   S+  +I  ++DGGI+  GLESTI+ V  +
Sbjct: 136 VIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTIIYVGAD 194

Query: 187 KKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            ++++LRPG +  E L ++  + + EY  D    P +PG L SHYAP   VRL       
Sbjct: 195 -EIKLLRPGPITSEELAQSSHLPITEYKAD-GQNPVAPGQLVSHYAPSQPVRLNISQKEA 252

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            E LI FG++   +        NLS +G L EAA +LF+ +   + S    IA + IP  
Sbjct: 253 DEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAPIPLE 304

Query: 306 GLGIAINNRLERAAAPRNQ 324
           G+G AIN+RL RAAAPR++
Sbjct: 305 GIGKAINDRLGRAAAPRDE 323


>gi|255263958|ref|ZP_05343300.1| Sua5/YciO/YrdC family protein [Thalassiobium sp. R2A62]
 gi|255106293|gb|EET48967.1| Sua5/YciO/YrdC family protein [Thalassiobium sp. R2A62]
          Length = 354

 Score =  228 bits (581), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 136/313 (43%), Positives = 182/313 (58%), Gaps = 13/313 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ +A   L AG  +A+PTETVYGL  D+RN TA   +YE K RP+ NPLI HV+D+S  
Sbjct: 53  SISRAAALLQAGGLVALPTETVYGLGADARNGTACAGIYEAKGRPSFNPLIVHVADVSHA 112

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
           +  A    ++  LA  FWPGPLTLVL L     I  L TA L T   RVP    T+ L+ 
Sbjct: 113 RHFAVFSDVAEVLAATFWPGPLTLVLPLRPDAVIASLVTAGLHTVAIRVPRHPVTRDLLA 172

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+A PSAN SG+IS T   H++   +   I  +I+ G S +G+ESTI++  C    
Sbjct: 173 AFGGPIAAPSANPSGRISATTPDHVI-DGLDGRIDAVIEAGASSVGVESTIIS--CVDTP 229

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LR GGL +  ++  +   + +     +T  +PG L SHYAP+ +VRL A H    E L
Sbjct: 230 MLLRQGGLPVSEIEAVLDRPIGFDT-SPATLAAPGQLASHYAPKGRVRLNANHAIGDEIL 288

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG+V           L LS+TG L EAA  LF  +   D  GA++IA + IP HGLG 
Sbjct: 289 LGFGDV--------TGDLTLSETGDLVEAARVLFRRLHELDAMGATAIAVAPIPEHGLGA 340

Query: 310 AINNRLERAAAPR 322
           AIN+RL RAAAPR
Sbjct: 341 AINDRLRRAAAPR 353


>gi|241761788|ref|ZP_04759874.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373702|gb|EER63262.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 329

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/325 (40%), Positives = 189/325 (58%), Gaps = 16/325 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  + KA + +  G P+ +PTETVYGLA D+ +  A+ R+Y+ K RP+ NPLI H++ I
Sbjct: 16  DSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIVHIAHI 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
               +    +  +L LA+ FWPG LT+VL L     I  + TA L T   R+P     ++
Sbjct: 76  EQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSHPVMRQ 135

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+ +GHPLA PSAN+SG IS T   H+   S+  +I  ++DGGI+  GLESTI+ +  +
Sbjct: 136 VIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTIIYIGAD 194

Query: 187 KKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            ++++LRPG +  E L ++  + + EY  D    P +PG L SHYAP   VRL       
Sbjct: 195 -EIKLLRPGPITSEELAQSSHLPITEYKAD-GQNPVAPGQLVSHYAPSQPVRLNISQKEA 252

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            E LI FG++   +        NLS +G L EAA +LF+ +   + S    IA + IP  
Sbjct: 253 DEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAPIPLE 304

Query: 306 GLGIAINNRLERAAAPR---NQSQR 327
           G+G AIN+RL RAAAPR   N SQR
Sbjct: 305 GIGKAINDRLGRAAAPRDEQNTSQR 329


>gi|91975727|ref|YP_568386.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisB5]
 gi|91682183|gb|ABE38485.1| translation factor SUA5 [Rhodopseudomonas palustris BisB5]
          Length = 330

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/309 (44%), Positives = 179/309 (57%), Gaps = 6/309 (1%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PTETVYGL  D+ NP A+ RLY  K RP+ NPLI HV+ +   +  A  D 
Sbjct: 24  LRGGGLIGFPTETVYGLGADAANPAAVARLYAAKGRPSFNPLIAHVASLDSARGLARFDA 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +L LA+ FWPGPLTLVL       +  L+TA L T   R+P     + ++  +G  +  
Sbjct: 84  TALRLAEAFWPGPLTLVLPKAPGCTVSDLATAGLDTVAVRIPAHPVAQAILRAFGGAVVA 143

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG +S T   H+  + +   I LI+DGG  ++G+ESTI+   C     +LRPGG 
Sbjct: 144 PSANRSGHVSPTTAAHV-RADLDGRIDLIVDGGPVEVGVESTILGC-CLGAPVLLRPGGA 201

Query: 198 EIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
             E ++R +   L       +    P +PGML SHYAP +QVRL A  V P EAL+ FG 
Sbjct: 202 PREAIERLLGFALAEPAAAPAGDHAPLAPGMLASHYAPGAQVRLDARDVRPGEALLGFGP 261

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
           V +   E A    NLS  G L EAA +LF +++  D SGA +IA   IP+ GLG AIN+R
Sbjct: 262 VALPGAEAASAIRNLSPAGDLAEAAAHLFGFLRELDASGAQAIAVMPIPHQGLGEAINDR 321

Query: 315 LERAAAPRN 323
           L RAAAPR+
Sbjct: 322 LRRAAAPRD 330


>gi|254488117|ref|ZP_05101322.1| Sua5/YciO/YrdC family protein [Roseobacter sp. GAI101]
 gi|214044986|gb|EEB85624.1| Sua5/YciO/YrdC family protein [Roseobacter sp. GAI101]
          Length = 357

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/316 (41%), Positives = 188/316 (59%), Gaps = 14/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   L +G  +AIPTETVYGLA D+ N  A+ R+Y  K RP+ NPLI H+++ 
Sbjct: 55  DLAGIDRAATLLRSGGLVAIPTETVYGLAADACNGAAVARIYAAKGRPSFNPLIVHLAET 114

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
              +++     L+  LA  FWPGPLTLVL L     +  L TA L +   RVP      +
Sbjct: 115 QQARRYGLWSDLAEVLATAFWPGPLTLVLPLAPDHGLSSLVTAGLNSVAIRVPALDAAHQ 174

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++  +G P+A PSAN SG+IS T  +H+L   +  +I  ++D G   +GLESTI+ +   
Sbjct: 175 VLTAFGGPVAAPSANPSGRISATTARHVL-DGLGGKIDAVLDAGPCPVGLESTIIGLHTP 233

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           +   +LR GGL +E ++ A+   LE  +   +   +PG L SHYAP ++VRL A+  NP 
Sbjct: 234 RPT-LLRAGGLPVEAIEAALGEPLE--IANGAEIIAPGQLASHYAPNARVRLNALSANPG 290

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E ++ FG  P+         LNLS TG L EAA +LF+++  A D+    IA + +P+HG
Sbjct: 291 EVMLGFG--PVDG------DLNLSPTGDLIEAAAHLFDHLH-ALDAMDKPIAVAPVPDHG 341

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RLERAAAPR
Sbjct: 342 LGRAINDRLERAAAPR 357


>gi|310815072|ref|YP_003963036.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25]
 gi|308753807|gb|ADO41736.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25]
          Length = 321

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/303 (43%), Positives = 178/303 (58%), Gaps = 12/303 (3%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A+PTETVYGLA D+    A+  +Y  K RP+ NPLI HV+DI+ V   A++   SL
Sbjct: 29  GQQVAVPTETVYGLAADATCDDAVAGIYAAKGRPSFNPLIVHVADIADVAAFAALSGESL 88

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            LA+ FWPGPLTLVL L +   I  L TA L+T   R+P     + LI+  G PLA+PSA
Sbjct: 89  ALAQAFWPGPLTLVLPLRADAPISKLVTAGLETVAVRLPAHPVARALIKAAGVPLAMPSA 148

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG+IS T  +H+L   +   I  ++DGG S +G+ESTIV V       +LR GG+  +
Sbjct: 149 NPSGRISPTAAQHVL-DGLAGRIAAVVDGGPSGVGVESTIV-VAGRGDAIVLRAGGVTPD 206

Query: 201 TLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
            +   +    L   + + + P +PG L SHYAP+  VRL A      E ++ FG+V    
Sbjct: 207 EIAAVLGYAPLRPDLSDEARPNAPGQLLSHYAPKGHVRLNATTAAAGEVMLGFGDV---- 262

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
               +  L LS  G L+EAA NLF      D  GA +IA + IP+ GLG+AIN+RL RAA
Sbjct: 263 ----VGDLTLSARGDLREAAANLFACFHRLDAMGAMAIAVAPIPDTGLGLAINDRLRRAA 318

Query: 320 APR 322
           APR
Sbjct: 319 APR 321


>gi|288959229|ref|YP_003449570.1| translation factor [Azospirillum sp. B510]
 gi|288911537|dbj|BAI73026.1| translation factor [Azospirillum sp. B510]
          Length = 331

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 185/318 (58%), Gaps = 6/318 (1%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T +  L++A E L AG  +A PTETVYGL  D+ +  A+  ++  K RP  NPLI H+ D
Sbjct: 19  TTAAGLKRAGELLRAGRLVAFPTETVYGLGADATDDRAVAAIFAAKGRPQFNPLIAHLPD 78

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           ++  +     D  +L LA  FWPGPLT+V+   + + +  L +A L +   RVP     +
Sbjct: 79  LASAQSWGLFDERALDLAAQFWPGPLTMVVPRPANSALSLLVSAGLDSIAIRVPGHPVAQ 138

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            ++   G P+A PSANRSG +S T   H+L  S+ + +  I+ GG   +GLEST++++  
Sbjct: 139 AILRAAGKPIAAPSANRSGAVSPTTPHHVL-ESLGERVDAIVTGGKCMVGLESTVIDLTG 197

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            + V +LRPG +  + ++R I   +     + + P+SPG L+SHYAP + VRL A     
Sbjct: 198 PEAV-LLRPGAVLPDEMERLIG-PVRLSAGDPTAPKSPGQLESHYAPDAAVRLNASSAAE 255

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA + FG  P + +      LNLS  G L EAA NLF++++  D SGA  IA   IP  
Sbjct: 256 DEAFLTFG--PDRFVFGGATRLNLSLEGDLNEAAANLFSHLRSLDQSGAKRIAVMPIPEL 313

Query: 306 GLGIAINNRLERAAAPRN 323
           GLG+AIN+RL RAAAPR 
Sbjct: 314 GLGLAINDRLRRAAAPRG 331


>gi|114767661|ref|ZP_01446371.1| Sua5/YciO/YrdC family protein [Pelagibaca bermudensis HTCC2601]
 gi|114540329|gb|EAU43423.1| Sua5/YciO/YrdC family protein [Roseovarius sp. HTCC2601]
          Length = 318

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/318 (41%), Positives = 180/318 (56%), Gaps = 11/318 (3%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L +    L +G  +A PTETVYGL  D+ N  A+ R+YE K RP+ NPLI H++D
Sbjct: 11  ADPEGLARGAGILRSGGLLAFPTETVYGLGGDACNDRAVARIYEAKGRPSFNPLIVHLAD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  VK       L+   A  FWPGPLT+VL L  +  +  L TA L +   R+P     +
Sbjct: 71  LDAVKALVVWSDLAEAAAAAFWPGPLTMVLPLRESAKVSKLVTAGLDSLAVRMPANPVAR 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+  +G P+A PSANRSG+IS T  +H+L  ++   I  ++DGG   +GLESTI+ +  
Sbjct: 131 ALLAEFGGPVAAPSANRSGRISPTRAEHVL-DTLDGRIEGVLDGGRCDVGLESTILGLA- 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             K  +LRPG + I+ L + +   +    D      +PG L SHYAPR++VRL A     
Sbjct: 189 -GKPTLLRPGRIGIDALSQVLGRPVMERKDREQI-SAPGQLSSHYAPRARVRLNAAEWQE 246

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA + FG             LNLS +G L EAA NLF Y+   D  GA +IA   +P+ 
Sbjct: 247 GEARLGFGQT------EGDCDLNLSPSGDLVEAAANLFEYLHRLDADGAETIAVMPVPHV 300

Query: 306 GLGIAINNRLERAAAPRN 323
           GLGIAIN+RL RAAAPR+
Sbjct: 301 GLGIAINDRLSRAAAPRD 318


>gi|94497450|ref|ZP_01304020.1| putative translation factor [Sphingomonas sp. SKA58]
 gi|94423081|gb|EAT08112.1| putative translation factor [Sphingomonas sp. SKA58]
          Length = 318

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/313 (41%), Positives = 188/313 (60%), Gaps = 12/313 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + +LR+A   + AG P+A+PTETVYGLA D+ +  A+  +Y  K RP+ NPLI HV+ + 
Sbjct: 17  AESLREAALLIRAGEPVAVPTETVYGLAADATDNNAVAAIYSAKGRPSFNPLIVHVAHMD 76

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           M +  A +   +  LA  FWPGPLT+VL + + + +  L TA L T   R+P     + L
Sbjct: 77  MARSLAHLSTTAETLAAQFWPGPLTMVLPVRADSGLSHLVTAGLPTVALRLPAHPAMRAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSANRSG IS T  +H+L +S+  ++ +++D G +  GLESTI   + + 
Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVL-ASLNGKVRMVLDEGPTSEGLESTIAAPEAD- 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           ++R+LRPG +    L +A  + +   + + +  ++PG L+SHYAP   VRL A+     E
Sbjct: 195 RIRLLRPGPVTAAMLGKATGLPVVVGLADAAI-EAPGQLESHYAPAKAVRLEALRAEADE 253

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            LI FG +P          +NLS    L+EA  NLF  + IAD S A+ IA + IP  G+
Sbjct: 254 YLIGFGLMPCH--------INLSPEANLREAGANLFAALHIADASTAARIAVAPIPPEGI 305

Query: 308 GIAINNRLERAAA 320
           G+AIN+RL+RAAA
Sbjct: 306 GVAINDRLKRAAA 318


>gi|300023494|ref|YP_003756105.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525315|gb|ADJ23784.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 315

 Score =  226 bits (575), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 187/320 (58%), Gaps = 12/320 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  + +A   L +G  +A PTETVYGL  D+ N  A+ R++  K RP+ NPLI HV  +
Sbjct: 4   NAEWIEEAGGLLRSGALVAFPTETVYGLGADATNGEAVARVFAAKGRPSFNPLIVHVLGL 63

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                  S    +  L + FWPGPLTLV+  + TTD+  L +A L T   R P     ++
Sbjct: 64  EQAVIIGSFSATARRLTEAFWPGPLTLVVPRIETTDVSELVSAGLPTVALRSPDHPVARQ 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++    P+A PSANRSG +S T  +H+ ++ +     +I+D G +  GLEST+V++   
Sbjct: 124 LLKAAQRPIAAPSANRSGHVSATRAEHV-AADLGDRAAVILDAGQTPRGLESTVVSLAGA 182

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             V +LRPG +  + +++ +  ++    +      SPG L+SHYAP S++RL A    P 
Sbjct: 183 APV-LLRPGAISADAIEKVLGEKIARASESGEHLTSPGQLRSHYAPNSRIRLNATAWEPH 241

Query: 247 EALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
           EA++ FG V   P K       ++N+S +G L EAA NLF  ++  D SGA++IA + IP
Sbjct: 242 EAVLAFGAVEEHPSK------ATINISPSGDLIEAAANLFAALRKLDGSGAATIAVTPIP 295

Query: 304 NHGLGIAINNRLERAAAPRN 323
            HGLG AIN+RL RAAAPR+
Sbjct: 296 AHGLGEAINDRLARAAAPRD 315


>gi|126728298|ref|ZP_01744114.1| Sua5/YciO/YrdC family protein [Sagittula stellata E-37]
 gi|126711263|gb|EBA10313.1| Sua5/YciO/YrdC family protein [Sagittula stellata E-37]
          Length = 328

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 133/318 (41%), Positives = 178/318 (55%), Gaps = 13/318 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D   L +A   L  G  +A PTETVYGL  D+R+  A+  +Y  K RP+ NPLI H +
Sbjct: 23  LPDPTGLARAASLLRDGRLVAFPTETVYGLGADARDDHAVAAIYAAKGRPSFNPLIVHFA 82

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           D+  +K   +    +  +A+ FWPGPLTLVL L     +  L TA L T   R+P     
Sbjct: 83  DLDALKPMVTWSDEAEAIAESFWPGPLTLVLPLREGARVSKLVTAGLDTIAVRMPAAPVA 142

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L+   G P+A PSAN SGQIS T  +H+ ++S+   +  I+DGG  K+GLESTI+ + 
Sbjct: 143 RDLLRAAGVPVAAPSANVSGQISPTRAEHV-AASLGDRVDAILDGGPCKVGLESTILGLA 201

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
              +  +LRPGG+  E L   +   +      + T  +PG  +SHYAPR+ VRL AI   
Sbjct: 202 G--RPTLLRPGGITREALGHVLGRRIAER-HGSDTISAPGQTRSHYAPRAAVRLNAIEFE 258

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
           P EA + FG V           LNLS +G L EAA NLF Y+   D      IA S IP+
Sbjct: 259 PGEASLGFGEVEAD--------LNLSPSGDLTEAAANLFEYLHRLDAKAPKVIAISPIPH 310

Query: 305 HGLGIAINNRLERAAAPR 322
            GLG+AIN+RL RAAA R
Sbjct: 311 LGLGVAINDRLSRAAADR 328


>gi|126734644|ref|ZP_01750390.1| Sua5/YciO/YrdC family protein [Roseobacter sp. CCS2]
 gi|126715199|gb|EBA12064.1| Sua5/YciO/YrdC family protein [Roseobacter sp. CCS2]
          Length = 348

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/316 (42%), Positives = 178/316 (56%), Gaps = 13/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA E L AG  ++ PTETVYGL  D+ N  A+ R+YE K RP+ NPLI HV D+
Sbjct: 45  DVAGLEKAAEILRAGGLVSFPTETVYGLGADACNDRAVARIYEAKGRPSFNPLIVHVPDM 104

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +  +++   +  +  LA+ FWPG LTLVL + +   I  L TA L T   RVP       
Sbjct: 105 AAAERYCDFNETARQLAQAFWPGALTLVLPVKAEAGISKLVTAGLDTLAIRVPDHPVAGA 164

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +  P+A PSAN SG +S T   H+ ++ +   I  +IDGG   +G+ESTIV+  C 
Sbjct: 165 LLSAFAGPVAAPSANPSGYVSPTMAAHV-AAGLGDRIDAVIDGGACLVGVESTIVS--CV 221

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LR GG  +E L+  +   L    D   T  +PG L SHYAP+ +VRL A +    
Sbjct: 222 GTPSLLRAGGTPVEVLEACLGRPLVASQD-PDTLTAPGQLASHYAPQGKVRLNAPYAQEG 280

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E L+ FG V  +        LNLS  G L +AA  LF  +   D  GA +IA S IP+HG
Sbjct: 281 EVLLGFGPVEAE--------LNLSAAGDLTQAAARLFACLHELDAMGAKAIAVSPIPDHG 332

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL+RA APR
Sbjct: 333 LGRAINDRLKRAGAPR 348


>gi|83952430|ref|ZP_00961161.1| Sua5/YciO/YrdC family protein [Roseovarius nubinhibens ISM]
 gi|83836103|gb|EAP75401.1| Sua5/YciO/YrdC family protein [Roseovarius nubinhibens ISM]
          Length = 317

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/312 (41%), Positives = 178/312 (57%), Gaps = 16/312 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R A    D GL +A+PTETVYGL  D+RN  A+ R++E K RP  NPLI HV  I   + 
Sbjct: 20  RAAAILRDGGL-VALPTETVYGLGGDARNDMAVARIFEAKGRPRFNPLIVHVDSIDRAQA 78

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           +      +  LA+ FWPGPLTLVL L     + PL TA+L T   R+P     ++L+  +
Sbjct: 79  YVHWSDQADRLAQAFWPGPLTLVLPLRDDAGLSPLVTADLPTLAIRLPAHPVAQRLLSEF 138

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+A PSAN SG+IS T   H+L + +   I  ++DGG   +GLESTI+ +   +   +
Sbjct: 139 AGPVAAPSANPSGRISPTTADHVL-AGLGGRIAAVLDGGACDVGLESTILGLG--RSPTL 195

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQ-SPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           LRPGGL    ++ A+ + L +    T  P  +PG + SHYAP + VRL A    P E  +
Sbjct: 196 LRPGGLPTGPIEAALGMALVH--HSTGDPLVAPGQMASHYAPGASVRLNARAAEPGELFL 253

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG  P+         LNLS +G L EAA NLF ++   D      IA + +P+ GLG+A
Sbjct: 254 GFG--PMD------CDLNLSASGDLTEAAANLFGHLHALDARAPDGIAVAPVPDTGLGLA 305

Query: 311 INNRLERAAAPR 322
           IN+RL RAAAPR
Sbjct: 306 INDRLRRAAAPR 317


>gi|294011241|ref|YP_003544701.1| putative translation factor [Sphingobium japonicum UT26S]
 gi|292674571|dbj|BAI96089.1| putative translation factor [Sphingobium japonicum UT26S]
          Length = 318

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/313 (43%), Positives = 186/313 (59%), Gaps = 12/313 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S ALR+A   + AG P+A+PTETVYGLA D+ +  A+  +Y  K RP+ NPLI HV+D  
Sbjct: 17  SEALREAALLIRAGEPVAVPTETVYGLAADATDSNAVAAIYAAKGRPSFNPLIVHVADQE 76

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           M  + A   P++  LA+ FWPG LTLVL   + + + PL  A L T   R+P     + L
Sbjct: 77  MAGRLAEFSPVADRLAERFWPGALTLVLPARADSGLSPLVMAGLPTVALRLPAHPAMRAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSANRSG IS T  +H++ +S+  +I +I+D G +  GLESTIV  + + 
Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVM-ASLNGKIRMILDEGPTSEGLESTIVAPETD- 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            +R+LRPG +    L+ A  + +    D T   ++PG L+SHYAP   VRL A+     E
Sbjct: 195 CIRLLRPGPVTAAMLEEAGMLPVVTGADNTKI-EAPGQLESHYAPSKPVRLNALKAEKNE 253

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            LI FG +P          +NLS    L+EAA +LF  + + D S A  IA + IPN G+
Sbjct: 254 YLIGFGLMPCH--------VNLSPDADLREAAAHLFAALHMGDASAAERIAVAPIPNEGI 305

Query: 308 GIAINNRLERAAA 320
           G+AIN+RL RAAA
Sbjct: 306 GVAINDRLRRAAA 318


>gi|114569382|ref|YP_756062.1| translation factor SUA5 [Maricaulis maris MCS10]
 gi|114339844|gb|ABI65124.1| translation factor SUA5 [Maricaulis maris MCS10]
          Length = 327

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/323 (41%), Positives = 181/323 (56%), Gaps = 13/323 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I   +D   + +A   L AG  +A+PTETVYGLA D+ N  A+ RLY  K RP  NPLI 
Sbjct: 15  IKPASDPAVIEEAVAILKAGGLVAMPTETVYGLAADAGNADAVARLYAAKGRPRFNPLIA 74

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           HV+  +M  + A    L+  LA+ FWPGPLTLVL       I  ++ A L +   R P  
Sbjct: 75  HVAGPNMAWRLAGWPDLADQLAESFWPGPLTLVLPKRPDAPIADIANAGLDSIALRAPRH 134

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + LI  +  PL  PSAN SG +S T   H+ +  +   I LI+DGG   +GLEST++
Sbjct: 135 AAAQALIRAFDGPLVAPSANPSGAVSPTTAAHV-AEGLGDRIDLILDGGACPVGLESTVI 193

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
            +       +LRPGGL    ++ AI+  L    D  +   +PGM+KSHYAP + +RL A 
Sbjct: 194 ALLGGTPT-LLRPGGLARRQIE-AITGRLADAGDGEAL-LAPGMMKSHYAPNAAMRLGAE 250

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
              P E L+ FG +           LNLS+TG L EAA  LF  ++  D  GA+ IA + 
Sbjct: 251 TAQPGEVLLGFGTI--------SGDLNLSETGDLAEAATGLFAALRTLDARGATRIAVAP 302

Query: 302 IPNHGLGIAINNRLERAAAPRNQ 324
           IP+ GLG AIN+RL+RAAAP++ 
Sbjct: 303 IPDEGLGEAINDRLQRAAAPKDD 325


>gi|297183981|gb|ADI20101.1| putative translation factor (sua5) [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 318

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/322 (40%), Positives = 190/322 (59%), Gaps = 16/322 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+S+    A + L +G  +A PTETVYGL  D+ N  A+ ++Y  KKRP  NPLI HV +
Sbjct: 8   TNSDGYDTASKILQSGGLVAFPTETVYGLGADALNNNAVSKIYAAKKRPTFNPLIVHVLN 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +   +K A  D  SL LA  FWPGPLT+V  + +  ++  L TA L+T  FRVP     +
Sbjct: 68  LETAQKFAIFDEDSLLLANKFWPGPLTIVAPIKADANLSKLITAGLETVAFRVPSHPVAR 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL++ +  P+A PSAN SG IS TN  H+  + +   I  I++GG   +GLESTI+ +  
Sbjct: 128 KLLKEFDGPVAAPSANPSGSISSTNAIHV-KNGLNGRIQAILNGGKCNVGLESTII-LSK 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             +  ILR GG+    +++ +  +L    +  S P +PG L SHYAP +++R+ A     
Sbjct: 186 SGECSILRSGGIPESEIEKVLGYKLSSSKNPDS-PIAPGQLSSHYAPNAKLRMNAEKAYD 244

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAFSS 301
            E +I FG+V        +  LNLS  G L EAA NLF+++ +AD+     G + IA + 
Sbjct: 245 DEYMIGFGDV--------VGQLNLSSQGDLTEAATNLFSFLHMADEDAITLGKTKIAVAP 296

Query: 302 IPNHGLGIAINNRLERAAAPRN 323
           IP + LGIAIN+RL+RA+ P++
Sbjct: 297 IPMNDLGIAINDRLKRASTPKD 318


>gi|83945388|ref|ZP_00957736.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851222|gb|EAP89079.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 327

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/321 (41%), Positives = 177/321 (55%), Gaps = 6/321 (1%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+S TD  AL +A   L AG  +A+PTETVYGLA D+ N  A+  +YE K RP+ NPLIC
Sbjct: 12  ILSATDPAALEEAARLLKAGGCVALPTETVYGLACDATNADAVAGVYEAKGRPSFNPLIC 71

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           HV  +   +    +D     LA  FWPGPLTLV    + + +  L+ A L +   R+P  
Sbjct: 72  HVDTVERARALIDLDETGEQLADAFWPGPLTLVASKRAPSPVSDLAAAGLDSLAVRLPRS 131

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + L+     PLA PSAN SG IS T  +H+   S+   I LI+DGG   +G+ESTIV
Sbjct: 132 EALRALVSRLDAPLAAPSANASGTISPTTAQHV-KDSLNGRIHLILDGGACPVGVESTIV 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           ++    +  +LRPGG+  E L+              + P +PG L SHYAP + VRL A 
Sbjct: 191 SLLEPGRPTLLRPGGVAREQLETVCGALGRAGAANQAAPTAPGQLTSHYAPNASVRLNAT 250

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                E+ + FG  P     + I+  NLS  G L EAA NLF  ++   DS +  IA + 
Sbjct: 251 APLAGESYLGFGAQPES---DDIVFFNLSPKGDLVEAATNLFTALRWL-DSASDRIAVAP 306

Query: 302 IPNHGLGIAINNRLERAAAPR 322
           IP  GLG AIN+RL RAAA R
Sbjct: 307 IPETGLGEAINDRLRRAAAER 327


>gi|170750228|ref|YP_001756488.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656750|gb|ACB25805.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 332

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/300 (42%), Positives = 168/300 (56%), Gaps = 4/300 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ +P A+  ++  K RP  NPLI H+ D          D  +  LA
Sbjct: 35  VAFPTETVYGLGADATDPAAVTGIFAAKARPRFNPLISHLPDAVAALAEGVFDAPARRLA 94

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLV+   + T +  L  A L +   RVP     + L+   G P+A PSAN S
Sbjct: 95  EAFWPGPLTLVVPAHTGTRVCDLVRAGLPSLALRVPAHPLARDLLAEVGRPVAAPSANWS 154

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T   H+L   +   I  ++DGG + +G+EST+V        R+LRPGG+    L+
Sbjct: 155 GRVSPTRAAHVLDD-LAGRISAVLDGGDTPVGVESTVVAC-LGGPPRLLRPGGITRAALR 212

Query: 204 RAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIEN 262
             + ++        +  P  PGML SHYAPR++VRL A+ V P EA + FG  P    E 
Sbjct: 213 DVLGLDPAAPEAADADRPAGPGMLASHYAPRARVRLDAVRVEPGEAALLFGPRPPAGHET 272

Query: 263 AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           A  SLNLS  G   EAA  LF  ++  D SGA +IA + IP  GLG AI +RL RAAAPR
Sbjct: 273 ARASLNLSPAGDPAEAAARLFGALRDLDASGAETIAVAPIPEDGLGEAIRDRLARAAAPR 332


>gi|294675961|ref|YP_003576576.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter capsulatus SB 1003]
 gi|294474781|gb|ADE84169.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter capsulatus SB 1003]
          Length = 319

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 129/304 (42%), Positives = 171/304 (56%), Gaps = 17/304 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+R  TA+  +Y  K RP  NPLI HV+D+ M ++ A     +  LA
Sbjct: 28  VAFPTETVYGLGGDARQDTAVAAIYAAKGRPQFNPLIVHVADMEMAEQVAVFSDQARDLA 87

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
             FWPGPLTLVL       I  L TA L T   R+P     + L+  +G PLA PSAN S
Sbjct: 88  ARFWPGPLTLVLPARPEAGISDLVTAGLATVAVRMPAHPVARALLAAFGGPLAAPSANPS 147

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T   H+L   +   I  ++DGG   +G+ESTI+ +       +LRPGG+++ETL+
Sbjct: 148 GKVSPTEADHVL-EGLSGRIAAVVDGGACPVGVESTILGLAPPV---LLRPGGVDVETLE 203

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
           +A+   L +  D    P +PG L SHYAP + VRL A    P E  + FG  P  +    
Sbjct: 204 KALGQPLAFGGDAVK-PNAPGQLVSHYAPGAAVRLDATEKRPGEIYLGFGPGPEAD---- 258

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPNHGLGIAINNRLERAA 319
              L LS      EAA  LF  +++AD      GA++IA + IP  GLG AIN+RL RAA
Sbjct: 259 ---LTLSVRADPVEAATRLFAMLRVADKLATARGAATIAIAPIPETGLGRAINDRLRRAA 315

Query: 320 APRN 323
           APR 
Sbjct: 316 APRG 319


>gi|259415145|ref|ZP_05739067.1| translation factor SUA5 [Silicibacter sp. TrichCH4B]
 gi|259349055|gb|EEW60809.1| translation factor SUA5 [Silicibacter sp. TrichCH4B]
          Length = 319

 Score =  222 bits (566), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 177/315 (56%), Gaps = 15/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L AG  +A PTETVYGL  D+ N  A+  +Y  K RP+ NPLI HV+D++  +
Sbjct: 18  IARAAELLAAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPLIAHVADVAAAQ 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
                +  +  +A  FWPGPLTLVL L     + PL TA L T   RVP     + L+  
Sbjct: 78  TLVQWNEWAEAMAAAFWPGPLTLVLPLRPDHPVSPLVTAGLDTLAVRVPAKACARDLLAA 137

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSAN SG+IS T   H+  + +  +I  I+D G   +G+ESTI+ +  +  V 
Sbjct: 138 VARPIAAPSANPSGRISPTTAAHV-RAGLGGKIAAILDDGPCGVGVESTILGLAGDAPV- 195

Query: 191 ILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           +LRPGGL  E ++ A+   L E    +  T  +PG L+SHYAP + VRL A    P E  
Sbjct: 196 LLRPGGLAAEDIEAALGCPLAERNAADPLT--APGQLQSHYAPNASVRLAARDFAPGEVS 253

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG             LNLS +G L EAA NLF Y+    D+    IA + +P HGLGI
Sbjct: 254 LGFG--------PGAFDLNLSPSGDLNEAAANLFGYLHQL-DAMERPIAVAPVPEHGLGI 304

Query: 310 AINNRLERAAAPRNQ 324
           AIN+RL RAAAPR+ 
Sbjct: 305 AINDRLRRAAAPRDS 319


>gi|312114717|ref|YP_004012313.1| Sua5/YciO/YrdC/YwlC family protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219846|gb|ADP71214.1| Sua5/YciO/YrdC/YwlC family protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 320

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 136/318 (42%), Positives = 177/318 (55%), Gaps = 15/318 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D  A+ +A   L +G  +A PTETVYGL  D+ N  A+ R++E K RP  NPLI HV D
Sbjct: 5   ADGTAIERAAHILRSGGLVAFPTETVYGLGADATNGVAVARIFEAKGRPRFNPLIVHVPD 64

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS---TANLKTACFRVPCG- 122
               ++ A  D  +  LA  FWPGPLTLVL L    +  PLS   TA L T   RVP   
Sbjct: 65  ADAARRFAVFDAEADALAARFWPGPLTLVLPLRRDVE-QPLSDLVTAGLDTVAIRVPHHP 123

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + L+E  G P+A PSAN SG+IS T   H+ +  I   + +I+DGG +  GLESTIV 
Sbjct: 124 VARALLEAAGVPVAAPSANISGRISPTRAAHV-AEDIGARVNMILDGGAADAGLESTIVA 182

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           ++   +  +LRPG +  E ++ A+   L     E     +PG L SHYAP + VRL A  
Sbjct: 183 LK--PRPTMLRPGAVAREDVEAALGAPLADR-GEGDGVTAPGQLASHYAPNASVRLHASE 239

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
             P E L+ FG    KN      ++NLS+ G L+EAA NLF  ++  D      IA   I
Sbjct: 240 ARPGETLLGFGPAAPKN------AMNLSRAGDLREAAANLFACLRALDAEKPGRIAVMPI 293

Query: 303 PNHGLGIAINNRLERAAA 320
           P+ GLG AIN+RL RAAA
Sbjct: 294 PDKGLGEAINDRLRRAAA 311


>gi|297717892|gb|ADI50089.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13]
          Length = 310

 Score =  221 bits (564), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 181/310 (58%), Gaps = 16/310 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +ACE L +G  +AIPTETVYGLA D+ N  A+ ++Y IK+RP  NPLI H       K
Sbjct: 12  LSQACELLSSGDVVAIPTETVYGLAADATNDKAVAKIYAIKQRPEFNPLIIHCHSAQQAK 71

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +   D  +  LA  FWPGP+T VL     + I  L+++ L+T   R+P     + LI+ 
Sbjct: 72  SYVQFDKRAEKLADAFWPGPITFVLKRYPDSAISFLASSGLETLAVRIPAHPVAQALIKA 131

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           Y  PLA PSAN S  IS T+   +  +S+   +PLIIDGG +++G+ESTI+++  E    
Sbjct: 132 YSKPLAAPSANLSQTISPTSAIDV-QASLGNRVPLIIDGGQTRVGVESTIIDL-TEAIPH 189

Query: 191 ILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           ILRPGG+ +E ++  I +V+L       +  ++PGM+  HYAP   +RL A      E  
Sbjct: 190 ILRPGGISVEQIQAVIGTVDLS----RRAGIKAPGMMARHYAPSVPMRLNAAAPLKGELF 245

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG++            NLS +G L+EAA NLF  M++ D    + IA + IP HGLG+
Sbjct: 246 LGFGSMD--------CDYNLSPSGNLEEAAANLFRMMRLMDRQNIAGIAVAPIPKHGLGL 297

Query: 310 AINNRLERAA 319
           AIN+RL RAA
Sbjct: 298 AINDRLMRAA 307


>gi|146339104|ref|YP_001204152.1| hypothetical protein BRADO2058 [Bradyrhizobium sp. ORS278]
 gi|146191910|emb|CAL75915.1| conserved hypothetical protein containing Sua5/YciO/YrdC/YwlC
           domains [Bradyrhizobium sp. ORS278]
          Length = 333

 Score =  221 bits (564), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 179/310 (57%), Gaps = 9/310 (2%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           F   GL +A PTETVYGL  D+ N  AI  LY+ K RPA NPLI HV+D +  ++    D
Sbjct: 28  FARGGL-VAFPTETVYGLGADAANAAAIAHLYQAKGRPAFNPLIAHVADAAAARRIGRFD 86

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLA 136
             +  LA  FWPGPLTLV+       +  L+TA L T   RVP   T + L+  +G  + 
Sbjct: 87  ATAERLAAAFWPGPLTLVVPQADQCPVADLATAGLDTVAIRVPAHPTARALLAAFGGAVV 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG +S T   H+ ++ +   I LI+DGG   +G+ESTI+   C  +  +LRPGG
Sbjct: 147 APSANISGHVSPTTAAHV-AADLSGRIDLILDGGAVDVGVESTIIG--CFAEPTLLRPGG 203

Query: 197 LEIETLKRAISVEL-EYCVDET---STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           +  E ++  +   L    V E      P +PGML SHYAP + VRL A +V P EAL+ F
Sbjct: 204 VPSEAIEAVLGQPLARLAVAEAHAAEQPLAPGMLASHYAPHAAVRLDATNVAPDEALLAF 263

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
           G V +     A   LNLS  G   EAA +LF Y++  D SGA SIA   IPN GLG AIN
Sbjct: 264 GPVTLPGAAQAAAILNLSPVGDPAEAATHLFGYLRSLDASGARSIAVMPIPNDGLGEAIN 323

Query: 313 NRLERAAAPR 322
           +RL RAAAPR
Sbjct: 324 DRLRRAAAPR 333


>gi|99078038|ref|YP_611296.1| translation factor SUA5 [Ruegeria sp. TM1040]
 gi|99035176|gb|ABF62034.1| Sua5/YciO/YrdC/YwlC [Ruegeria sp. TM1040]
          Length = 323

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/309 (41%), Positives = 174/309 (56%), Gaps = 13/309 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  +A PTETVYGL  D+ N  A+  +Y  K RP+ NPLI HV+D+   ++    
Sbjct: 27  ELLTAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPLIAHVADVRAARRLVQW 86

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
           +  +  +A  FWPGPLTLVL L    ++ PL TA L T   RVP    +++L+   G P+
Sbjct: 87  NDWAEAMATAFWPGPLTLVLPLRPDHNVSPLVTAGLDTLAVRVPAKACSRELLAAVGRPV 146

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+IS T   H+  + +  +I  I+D G   +G+ESTI+ +     + +LRPG
Sbjct: 147 AAPSANPSGRISPTTADHV-RAGLGGKIAAILDDGPCGVGVESTILGLAGAAPI-LLRPG 204

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           GL  E ++ A+   L     E     +PG L SHYAP + VRL A   +P E  + FG  
Sbjct: 205 GLAAEDIEHALGCTL-MTRAEADPLTAPGQLMSHYAPNASVRLEAQDFSPDEVSLGFG-- 261

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
                      LNLS +G L EAA NLF ++   D  G   IA + +P  GLGIAIN+RL
Sbjct: 262 ------PGDFDLNLSPSGDLNEAAANLFGHLHHLDALG-RPIAVAPVPERGLGIAINDRL 314

Query: 316 ERAAAPRNQ 324
            RAAAPR+ 
Sbjct: 315 RRAAAPRDS 323


>gi|307294299|ref|ZP_07574143.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880450|gb|EFN11667.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobium chlorophenolicum
           L-1]
          Length = 318

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/313 (43%), Positives = 185/313 (59%), Gaps = 12/313 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S ALR+A   + AG P+A+PTETVYGLA D+ +  A+  +Y  K RP+ NPLI HVSD  
Sbjct: 17  SEALREAALLIRAGEPVAVPTETVYGLAADATDSNAVAAIYTAKGRPSFNPLIVHVSDRE 76

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           M  + A   P++  LA  FWPG LTLVL + + + + PL  A L T   R+P     + L
Sbjct: 77  MAGRLAEFSPVADRLADRFWPGALTLVLPVRADSGLSPLVMAGLPTVALRLPAHPAMRAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSANRSG IS T  +H+L +S+  +I +I+D G +  GLESTI   + + 
Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVL-ASLNGKIRMILDEGPTSEGLESTIAAPESD- 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           ++R+LRPG +    L+ A  + +    D     ++PG L+SHYAP   VRL A+     E
Sbjct: 195 RIRLLRPGPVTAAMLEEASRLPVVAGADNGKI-EAPGQLESHYAPSKPVRLNALKAEKDE 253

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            LI FG +P          +NLS    L+EAA +LF  + +AD S A  IA + I N G+
Sbjct: 254 YLIGFGLMPCH--------VNLSPDADLREAAAHLFAALHMADASTAERIAVAPILNEGI 305

Query: 308 GIAINNRLERAAA 320
           G+AIN+RL RAAA
Sbjct: 306 GVAINDRLRRAAA 318


>gi|323137611|ref|ZP_08072688.1| Sua5/YciO/YrdC/YwlC family protein [Methylocystis sp. ATCC 49242]
 gi|322397237|gb|EFX99761.1| Sua5/YciO/YrdC/YwlC family protein [Methylocystis sp. ATCC 49242]
          Length = 321

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/299 (40%), Positives = 171/299 (57%), Gaps = 5/299 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ N  A+ R+Y+ K RP+ NPLI H++DI   ++ A +   +L LA
Sbjct: 25  VAFPTETVYGLGADATNAWAVARIYDAKGRPSFNPLIAHIADIESARREALLPEAALRLA 84

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPGPLT+V  +     +  L+ A L +   R+P     + LI   G P+A PSANRS
Sbjct: 85  EAFWPGPLTIVAPVAPGGSVCELARAGLPSVALRIPDHPVAQALIAALGRPIAAPSANRS 144

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G +S     H+ +  +   + +I+DGG +  GLESTIV+  CE    +LRPG +  E ++
Sbjct: 145 GHVSPVTAAHV-AEDLSGRVEMILDGGRTTAGLESTIVSF-CEATPILLRPGAISREAIE 202

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
           + +  +L       +   +PGM  SHYAP +++RL A  + P E  + FG          
Sbjct: 203 KVLGEKL--AAPARAEVLAPGMTASHYAPDARLRLEAHELEPGEGALDFGGRLTALAPPG 260

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
              L+LS  G L EAA NLF Y++  D  G  S+A + IP  GLG AIN+RL RA+APR
Sbjct: 261 ATVLDLSPVGDLVEAAANLFAYLREFDARGVRSVAVAHIPERGLGEAINDRLRRASAPR 319


>gi|23012172|ref|ZP_00052324.1| COG0009: Putative translation factor (SUA5) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 329

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 168/297 (56%), Gaps = 5/297 (1%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+           D  +  LA  F
Sbjct: 36  PTETVYGLGADATDPEAVAAIYAAKGRPHFNPLIAHVATHEAALAEGVFDAAAQLLATAF 95

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQI 146
           WPGPLTLV+ +     +  L+ A L +   RVP  G  + L+   G P+A PSANRSG++
Sbjct: 96  WPGPLTLVVPVSPGGSVCELARAGLDSVALRVPAHGLARDLLARVGRPVAAPSANRSGRV 155

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRA 205
           S T+  H+L+  +   I  ++DGG   +G+ES++V   C     R+LRPGG+  E +   
Sbjct: 156 SPTSADHVLAD-LDGRIDAVLDGGECPVGVESSVV--ACLGGTPRLLRPGGVTREAIAAL 212

Query: 206 ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII 265
           +  +     D  + P  PG+L SHYAPR+ VRL A  + P EA + FG    + ++ A  
Sbjct: 213 LGFDPAAAGDPGAQPVGPGLLASHYAPRAGVRLDATAIAPGEAALLFGAFRPEGLKRAAA 272

Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             +LS+ G   EAA  LF  ++  D SGA+ IA + +P  GLG AIN+RL RAAAPR
Sbjct: 273 VESLSERGDPAEAAARLFGALRRLDASGAAVIAVAPVPGEGLGEAINDRLRRAAAPR 329


>gi|27377681|ref|NP_769210.1| hypothetical protein bll2570 [Bradyrhizobium japonicum USDA 110]
 gi|27350826|dbj|BAC47835.1| bll2570 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/304 (44%), Positives = 173/304 (56%), Gaps = 10/304 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A  TETVYGL  D+ N TAI  LY  K RPA NPLI HV+DI+  +     D  +L LA
Sbjct: 30  VAFATETVYGLGADAANATAIAHLYAAKGRPAFNPLIAHVADITAAQAIGRFDARALKLA 89

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLV+       +  L+TA L T   R+P     + ++  +G  +  PSAN S
Sbjct: 90  EAFWPGPLTLVVPKTDGCPVADLATAGLDTVAIRIPAHPVAQAILRAFGGAVVAPSANIS 149

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G +S T   H+  S +   I LI+DGG   +G+ESTIV   C     +LRPGGL  E ++
Sbjct: 150 GHVSPTLAAHV-ESDLSGRIDLIVDGGPVAVGVESTIVG--CLNAPMLLRPGGLSRERIE 206

Query: 204 RAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258
             +   L     E   D+ S P +PGML SHYAPR+ VRL A  V P EAL+ FG   + 
Sbjct: 207 AVLGAALARPPAEAGSDD-SQPLAPGMLASHYAPRANVRLNAREVAPGEALLAFGPSRLP 265

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
            ++ A   +NLS T  L EAA NLF Y++  D  G  +IA  +IP   LG AIN+RL RA
Sbjct: 266 GLDAAAAVMNLSPTADLDEAAANLFGYLRALDAKGPRAIAVMTIPEDDLGEAINDRLRRA 325

Query: 319 AAPR 322
           A  R
Sbjct: 326 AVAR 329


>gi|258541814|ref|YP_003187247.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256632892|dbj|BAH98867.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256635949|dbj|BAI01918.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639004|dbj|BAI04966.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642058|dbj|BAI08013.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645113|dbj|BAI11061.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648168|dbj|BAI14109.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651221|dbj|BAI17155.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654212|dbj|BAI20139.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 333

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 173/312 (55%), Gaps = 9/312 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ L+ A   L  G  +A  TETVYGL  D+  P  + R++E K RP  NPLI H +D  
Sbjct: 9   SSGLQTAARILREGGLVAFGTETVYGLGGDATQPKTVARIFEAKNRPRFNPLISHFADAQ 68

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
                   +PL+  LA  FWPGPLTL+L     + +  L+   L T   RVP G T + L
Sbjct: 69  AAFTQVVANPLAHKLADTFWPGPLTLILPRAPHSTVSDLAADGLPTLAVRVPKGETVQAL 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++    P+A PSANRSG+IS ++  H+L   +   I  ++D G  ++G+EST++++   +
Sbjct: 129 LKLVQRPIAAPSANRSGRISPSDAAHVL-EELDGRIDAVLDSGPCQVGVESTVLDISNPE 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           +  +LRPGG+ +E L+           +  + P SPG L SHYAP   VRL A  V P E
Sbjct: 188 RPTLLRPGGITLEALQAVCGTIFMPETEVDAAPASPGRLLSHYAPHLPVRLNATDVAPDE 247

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIP 303
           AL+ FGN        A IS NLS++G L+EAA  LF  ++  D  G S     IA   IP
Sbjct: 248 ALLAFGNT---QPSEAAISWNLSESGNLEEAAARLFTGLRTLDKQGQSHHLRGIAVQPIP 304

Query: 304 NHGLGIAINNRL 315
            HGLG+AI +RL
Sbjct: 305 QHGLGLAIQDRL 316


>gi|163745661|ref|ZP_02153021.1| Sua5/YciO/YrdC family protein [Oceanibulbus indolifex HEL-45]
 gi|161382479|gb|EDQ06888.1| Sua5/YciO/YrdC family protein [Oceanibulbus indolifex HEL-45]
          Length = 310

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/314 (41%), Positives = 178/314 (56%), Gaps = 14/314 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +A   L  G  +A+PTETVYGL  D+RN  A+  +Y  K RP+ NPLI H+ DI  
Sbjct: 10  QGIARAARLLQDGALVALPTETVYGLGADARNGAAVAGIYAAKGRPSFNPLIVHLPDIET 69

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            K++      +  LA+ FWPG LTLVL L   + +  L TA L +   RVP     ++++
Sbjct: 70  AKRYVQWTDEADRLAQAFWPGALTLVLPLRPDSGLSSLVTAGLASLAVRVPAHPAMRQVL 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+A PSAN SG+IS T   H+L + +  +I  ++D G   +GLESTI+ +   + 
Sbjct: 130 QALDGPVAAPSANPSGKISATTAAHVL-AGLDGKIAAVLDDGACSVGLESTIIGLTGPRP 188

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             +LR GGL  E ++  +   LE  VD      +PG L SHYAP + VRL A    P E 
Sbjct: 189 A-LLRAGGLPSEAIEAVLGQTLE-IVDGAEI-IAPGQLASHYAPGAAVRLDAETAGPGEV 245

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
           L+ FG +        I  LNLS  G L EAA NLF+++   D +G   IA + IP+HGLG
Sbjct: 246 LLGFGTM--------ICDLNLSPAGDLTEAAANLFDHLHQLDATG-QQIAVAPIPDHGLG 296

Query: 309 IAINNRLERAAAPR 322
            AIN+RL RAAAPR
Sbjct: 297 RAINDRLARAAAPR 310


>gi|126726057|ref|ZP_01741899.1| Putative translation factor [Rhodobacterales bacterium HTCC2150]
 gi|126705261|gb|EBA04352.1| Putative translation factor [Rhodobacterales bacterium HTCC2150]
          Length = 320

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/325 (40%), Positives = 184/325 (56%), Gaps = 13/325 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+S  D+  L  +   L  G  +A PTETVYGL  D+RN  A+  ++  K RP+ NPLI
Sbjct: 4   QILSANDAG-LSLSSLILQRGGLVAFPTETVYGLGADARNDKAVAAIFAAKGRPSFNPLI 62

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV  +    + A   PL+  LA+ FWPGPL+LVL LL    +  L +A + +   R+P 
Sbjct: 63  VHVQSLPAATEFADFSPLAFKLAQAFWPGPLSLVLPLLKGGQLSHLVSAGMPSVAIRIPA 122

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L++ +G P+A PSAN SGQIS T   H+ ++ +   I  I+DGG+  +G+ESTI
Sbjct: 123 HPVAQGLLQVFGGPIAAPSANPSGQISPTTPGHV-TAGLKDRIDAILDGGLCSVGVESTI 181

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + V  +  V +LRPGG+ +E + + I        +ET+   SPG L SHYAP++ + L  
Sbjct: 182 LGV-SDDDVTLLRPGGISVEQIAKVIGFTPTLTTNETTP-NSPGQLLSHYAPKADIVLNV 239

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD--DSGASSIA 298
               P    + FGN        A  +LNLS  G L EAA NLF ++   D   +    IA
Sbjct: 240 TDPEPEMMSLGFGNA------IAHPTLNLSPKGDLTEAAANLFAHLHALDAMANAGQCIA 293

Query: 299 FSSIPNHGLGIAINNRLERAAAPRN 323
            + IP  GLG+AIN+RL RAAAPR+
Sbjct: 294 VAPIPMTGLGLAINDRLTRAAAPRD 318


>gi|197104025|ref|YP_002129402.1| Sua5/YciO/YrdC family protein [Phenylobacterium zucineum HLK1]
 gi|196477445|gb|ACG76973.1| Sua5/YciO/YrdC family protein [Phenylobacterium zucineum HLK1]
          Length = 307

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/317 (42%), Positives = 177/317 (55%), Gaps = 15/317 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M  TD +    A + L AG  + +PTETVYGLA D+ NP A+  +YE K RP+ NPLI H
Sbjct: 1   MDPTDPH---TAAQALKAGGLVLMPTETVYGLAADAANPRAVAAVYEAKGRPSFNPLISH 57

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
           V+D+ M ++ A  DP +  L   FWPGPLTLVL    T  +  L+ A L T   R P   
Sbjct: 58  VADVGMARRIARFDPRAEALTARFWPGPLTLVLPAADTAAVCDLARAGLDTVAVRAPAHP 117

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + L++ +G P+  PSANRSG+ S T     L  +        +DGG  ++GLEST+V 
Sbjct: 118 LARALLQAFGGPVVAPSANRSGRPSPTTFAAALEETGYAAA-AALDGGPCEVGLESTVVA 176

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           +  E   R+LRPG +    ++  I    E   D     +SPG L  HYAP   VRL A  
Sbjct: 177 LLDE--ARLLRPGAVTRAEIEAVIGPLAEAEADAR---RSPGRLARHYAPDLPVRLDAAA 231

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
               EA + FG  P         + NLS +G LKEAA NLF  ++ AD SGAS+IA + I
Sbjct: 232 PAAGEAFLAFGPAP-----ETARTFNLSPSGDLKEAAANLFAMLRAADRSGASAIAVAPI 286

Query: 303 PNHGLGIAINNRLERAA 319
           P+ GLG AIN+RL+RAA
Sbjct: 287 PHEGLGEAINDRLKRAA 303


>gi|260431590|ref|ZP_05785561.1| Sua5/YciO/YrdC family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415418|gb|EEX08677.1| Sua5/YciO/YrdC family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 316

 Score =  218 bits (556), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 134/308 (43%), Positives = 169/308 (54%), Gaps = 14/308 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  GL +A PTETVYGL  D+RN  A+  +Y  K RP+ NPLI HV+ +   ++H   
Sbjct: 21  ELLRQGLLVAFPTETVYGLGADARNGEAVAAIYAAKGRPSFNPLIAHVASVEAAQRHVEW 80

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPL 135
              +  LA  FWPGPLTLVL L +   +  L TA L T   RVP   T + L+     P+
Sbjct: 81  SDQAQQLADAFWPGPLTLVLPLRAGHGVSSLVTAGLDTLAVRVPAHPTAQALLRAVDGPV 140

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+IS T   H+    +   I  I+D G   +GLESTIV +       +LRPG
Sbjct: 141 AAPSANPSGRISPTTAAHV-REGLDGRIAAILDDGPCAVGLESTIVGLAGTPA--LLRPG 197

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  E ++  +  +L +         +PG L+SHYAP + VRL A      E L+ FG V
Sbjct: 198 GVAAEQIEAVLGTKLSHH-KPGDLLTAPGQLQSHYAPDAPVRLNAEQRRGDEVLLGFGPV 256

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
                      LNLS+ G L EAA NLF  +   D SG   IA S IP HGLG AIN+RL
Sbjct: 257 --------ACDLNLSERGDLLEAAANLFASLHELDKSG-RPIAVSPIPGHGLGAAINDRL 307

Query: 316 ERAAAPRN 323
            RAAAPRN
Sbjct: 308 RRAAAPRN 315


>gi|217976634|ref|YP_002360781.1| Sua5/YciO/YrdC/YwlC family protein [Methylocella silvestris BL2]
 gi|217502010|gb|ACK49419.1| Sua5/YciO/YrdC/YwlC family protein [Methylocella silvestris BL2]
          Length = 328

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 181/317 (57%), Gaps = 8/317 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            ++  L +    L A   +A PTETVYGL  D+    A+ R+Y  K RPA NPLI HV+ 
Sbjct: 18  ANAAGLAEGARLLQAEKLVAFPTETVYGLGADASCDAAVARIYAAKGRPAFNPLISHVAS 77

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           ++   +H      +  LA+ FWPGPLTLVL + +T  +  L+ A  +T   RVP      
Sbjct: 78  LAEASRHGIFSAAARRLAETFWPGPLTLVLPVAATNRVCELARAGRRTVALRVPAHKDAL 137

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSANRSG++S    +H+ +  +  E+ LI+DGG   +G+ESTIV    
Sbjct: 138 ALIAAAGLPIAAPSANRSGRVSPVTARHV-AEDLGDEVDLILDGGACHVGVESTIVACLG 196

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           E   ++LRPGGL    ++ A+ + L    + +S   +PG L SHYAPR+ VRL A  + P
Sbjct: 197 ETP-QLLRPGGLSRAVIEEALGLALP-AREASSEIVAPGALASHYAPRALVRLDAEKLEP 254

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA + FG            +L+LS    L EAA NLF +++  D  G ++IA + IP  
Sbjct: 255 GEAGLDFGG----RFTRGPATLDLSPAADLDEAAANLFAFLRELDAGGPAAIAVAPIPRS 310

Query: 306 GLGIAINNRLERAAAPR 322
           G+G AIN+RL+RAAAPR
Sbjct: 311 GIGEAINDRLKRAAAPR 327


>gi|254512404|ref|ZP_05124471.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium KLH11]
 gi|221536115|gb|EEE39103.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium KLH11]
          Length = 315

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/317 (41%), Positives = 175/317 (55%), Gaps = 14/317 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A + L  GL +A PTETVYGL  D+RN  A+  +Y+ K RP+ NPLI HV   
Sbjct: 12  DPAGIARAADLLRQGLLVAFPTETVYGLGGDARNGNAVAAIYQAKGRPSFNPLIAHVDSA 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
              ++       +  LA  FWPGPLTLVL L     +  L TA L T   RVP   T + 
Sbjct: 72  QTAQRFVEWSDQAEQLATAFWPGPLTLVLPLREGHGMSSLVTAGLDTLAVRVPAHPTARA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +  P+A PSAN SGQIS T   H+  + +   I  ++D G   +GLESTIV +  +
Sbjct: 132 LLAAFDGPVAAPSANPSGQISPTTAAHV-RAGLGGRIAAVLDDGPCGVGLESTIVGLTGD 190

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LRPGG+ +E ++  +  +L +         +PG ++SHYAP + VRL A      
Sbjct: 191 PA--LLRPGGVALEQIEDTLQTKLHHH-QSGDLLTAPGQMQSHYAPDAPVRLNARSRRGD 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E L+ FG V           LNLS++G L EAA NLF  +   + +G   IA S IP+HG
Sbjct: 248 EVLLGFGPV--------ACDLNLSESGDLPEAASNLFAALHDLNSTG-RPIAVSPIPDHG 298

Query: 307 LGIAINNRLERAAAPRN 323
           LG AIN+RL RAAAPR 
Sbjct: 299 LGAAINDRLRRAAAPRG 315


>gi|126740572|ref|ZP_01756259.1| Sua5/YciO/YrdC family protein [Roseobacter sp. SK209-2-6]
 gi|126718373|gb|EBA15088.1| Sua5/YciO/YrdC family protein [Roseobacter sp. SK209-2-6]
          Length = 324

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/318 (41%), Positives = 176/318 (55%), Gaps = 9/318 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L +A + L AG  ++  TETVYGL  D+R   A+  +Y  K RP+ NPLI H + 
Sbjct: 15  ADPAGLTRAAQLLQAGELVSFATETVYGLGADARQGEAVAAIYAAKGRPSFNPLIVHAAS 74

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
               +++   +  +  LA+ FWPGPLTLVL L     I  L TA L+T   RVP     +
Sbjct: 75  AEAAQRYVLWNGWAEVLAQAFWPGPLTLVLPLRPKHGISGLVTAGLETLAVRVPAQPSAQ 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L++ +  P+A PSAN SG+IS T   H+  + +   I  I+D G   +GLESTIV +  
Sbjct: 135 RLLQIFDGPVAAPSANPSGRISPTLASHVF-AGLNGRIAAIVDDGACGVGLESTIVGLAG 193

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           E  + +LRPGGL  E ++ A+   L    D      +PG L SHYAP  QVRL A     
Sbjct: 194 EAPI-LLRPGGLAAEEIEEALGQPLRQR-DVQDPLTAPGQLLSHYAPNEQVRLNAAAARN 251

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            E  + FG       E+    LNLS  GKL EAA +LF+Y+   D  G   IA + IP+ 
Sbjct: 252 GEVFLGFGAHQGSGPED----LNLSPDGKLTEAAAHLFDYLHQLDGLG-RPIAVAPIPDE 306

Query: 306 GLGIAINNRLERAAAPRN 323
           GLG AIN+RL RAAAPR+
Sbjct: 307 GLGAAINDRLARAAAPRD 324


>gi|254476620|ref|ZP_05090006.1| Sua5/YciO/YrdC family protein [Ruegeria sp. R11]
 gi|214030863|gb|EEB71698.1| Sua5/YciO/YrdC family protein [Ruegeria sp. R11]
          Length = 315

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/312 (42%), Positives = 174/312 (55%), Gaps = 13/312 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A   L  G  +A PTETVYGL  D+R   A+  LY  K RP+ NPLI HV  I   K
Sbjct: 16  IRQAAALLQDGQLVAFPTETVYGLGADARQGEAVAALYAAKGRPSFNPLIAHVHSIEAAK 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +H      +  LA+ FWPGPLTLVL L    DI  L TA L+T   R+P     + L+  
Sbjct: 76  RHVIWTETANKLAEAFWPGPLTLVLPLRDGHDISHLVTAGLETLGVRIPAHPAARALLSA 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSAN SG+IS T   H++ + +   I  I+D G   +G+ESTIV +  E  + 
Sbjct: 136 LDGPVAAPSANPSGRISPTTAAHVV-AGLDGRIAAIVDDGPCGVGVESTIVGLSGETPI- 193

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           +LRPGGL  E ++  +   L+   D +    +PG L SHYAPR++VRL     +P E  +
Sbjct: 194 LLRPGGLAQEDIETVLGHPLQ-LRDASDPLTAPGQLLSHYAPRAKVRLNVTTPDPAELYL 252

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG +           LNLS +  L EAA NLF ++    D+    IA + IP HGLG A
Sbjct: 253 GFGTMSCD--------LNLSDSADLVEAAANLFGHLHQL-DAMDKPIAVAPIPEHGLGAA 303

Query: 311 INNRLERAAAPR 322
           IN+RL RAAAPR
Sbjct: 304 INDRLRRAAAPR 315


>gi|149204213|ref|ZP_01881181.1| Sua5/YciO/YrdC family protein [Roseovarius sp. TM1035]
 gi|149142655|gb|EDM30700.1| Sua5/YciO/YrdC family protein [Roseovarius sp. TM1035]
          Length = 315

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/318 (42%), Positives = 178/318 (55%), Gaps = 14/318 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D      A     AG  +A PTETVYGL  D+R+  A+ R++E K RP  NPLI HV  
Sbjct: 10  ADLAGFATASAIWSAGGLVAFPTETVYGLGADARDDRAVARIFEAKGRPRFNPLIVHVES 69

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
               +++ +    +  LA  FWPGPLTLVL L +   + PL TA L T   RVP     +
Sbjct: 70  DDAARRYVTWSDAAEILASAFWPGPLTLVLPLRADAGLSPLVTAELPTLAIRVPEHPVAR 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+ T+G P+A PSAN SG+IS T   H+L + +   I  +I+GG   +G+ESTIV +  
Sbjct: 130 GLLSTFGGPVAAPSANPSGRISPTTAAHVL-AGLSGRIEGVIEGGACAVGVESTIVGLAG 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           E    +LRPGG+ +E ++ A+ + L   V       +PG L+SHYAP + VRL A     
Sbjct: 189 EPC--LLRPGGVPVEAIEVALGMPLARHVAGDPL-VAPGQLQSHYAPGAPVRLNAQDRRA 245

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            E L+ FG V           +NLS +G L EAA NLF ++  A D+  + IA S IP  
Sbjct: 246 GELLLGFGAVDAD--------MNLSPSGDLIEAAANLFGHLH-ALDARDAPIAVSPIPEV 296

Query: 306 GLGIAINNRLERAAAPRN 323
           GLG AIN+RL RAAAPR 
Sbjct: 297 GLGRAINDRLRRAAAPRG 314


>gi|84500239|ref|ZP_00998505.1| Putative translation factor [Oceanicola batsensis HTCC2597]
 gi|84392173|gb|EAQ04441.1| Putative translation factor [Oceanicola batsensis HTCC2597]
          Length = 314

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 133/323 (41%), Positives = 178/323 (55%), Gaps = 13/323 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++  TD + L +A   L +G  +A+PTETVYGLA D+ +  A+  +Y  K RP+ NPLI
Sbjct: 3   ELLKPTD-DGLDRAAALLRSGGLVAMPTETVYGLAGDAADDRAVAAIYAAKGRPSFNPLI 61

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV+D  +V +   V   +  L + FWPGPLTLVL L     + PL TA L T   R+P 
Sbjct: 62  VHVADPDLVGRLVRVSAEAAALIEAFWPGPLTLVLPLREAAPVSPLVTAGLPTLAVRMPA 121

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L+  +G  LA PSAN SG++S     H++ + +   I  ++DGG   +GLESTI
Sbjct: 122 HPVARSLLTAFGGGLAAPSANPSGRVSPVTAAHVM-AGLAGRIDAVLDGGECGVGLESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V    +  V ILR GG+  E L   +  E       T    +PG L SHYAP  QVR+  
Sbjct: 181 VGFDGDAPV-ILRDGGVTAEDLASVMG-ETPRRRGATGRIDAPGQLASHYAPSGQVRIGV 238

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
               P E  + FG V           LNLS+TG L EAA NLF +    D  G+  IA +
Sbjct: 239 TAPEPGETYLGFGPV--------TCDLNLSETGDLAEAAANLFRHFHTLDAQGSERIAVA 290

Query: 301 SIPNHGLGIAINNRLERAAAPRN 323
            +P+HGLG AIN+RL RAAAPR 
Sbjct: 291 PVPDHGLGRAINDRLRRAAAPRQ 313


>gi|304321289|ref|YP_003854932.1| Sua5/YciO/YrdC family protein [Parvularcula bermudensis HTCC2503]
 gi|303300191|gb|ADM09790.1| Sua5/YciO/YrdC family protein [Parvularcula bermudensis HTCC2503]
          Length = 308

 Score =  216 bits (550), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/314 (42%), Positives = 176/314 (56%), Gaps = 15/314 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ KA E L +G  + +PTETVYGLA D+    AI RLYEIK RP  NPLI HV D    
Sbjct: 9   SIDKAAEQLRSGGLVGLPTETVYGLAADATQGEAIARLYEIKGRPHFNPLIVHVLDRRDA 68

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                ++P +  L   FWPGPLTLVL       +  ++ A L T   R P     + L+ 
Sbjct: 69  AHITEMEPRADQLISRFWPGPLTLVLPSKRGGPVADIALAGLDTVAIRAPLHPVARALLA 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+  PSANRSG+IS T   H++ +    +IP ++DGG   +GLESTIV +  E+  
Sbjct: 129 VFGGPIVAPSANRSGRISPTIAGHVV-AEFGTDIP-VLDGGPCTVGLESTIVGLTGERPT 186

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LRPGG+  + ++  +    E   +      +PGM+ SHYAP + VRL A      E L
Sbjct: 187 -LLRPGGITAQQIEEILG---EPLAEPGGGIDAPGMMASHYAPDAAVRLDAKAATEDEVL 242

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG  P         +L+LS +G L EAA NLF +M+  D  G   IA + IP  GLG 
Sbjct: 243 LGFGGTPGA-------TLDLSPSGDLIEAAANLFAHMRELDRHG-RPIAVAPIPEDGLGK 294

Query: 310 AINNRLERAAAPRN 323
           AIN+RL RAAAPRN
Sbjct: 295 AINDRLRRAAAPRN 308


>gi|83312811|ref|YP_423075.1| putative translation factor [Magnetospirillum magneticum AMB-1]
 gi|82947652|dbj|BAE52516.1| Putative translation factor [Magnetospirillum magneticum AMB-1]
          Length = 368

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 121/303 (39%), Positives = 177/303 (58%), Gaps = 10/303 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ +  A+  +++ K RP+ NPLI HVS +        +   +  LA
Sbjct: 75  VAFPTETVYGLGGDATSDAAVAAIFKAKGRPSFNPLIAHVSSLEQAAALVELGADAHLLA 134

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLVL   + + +  L++A L +   R+P       LI+  G PLA PSANRS
Sbjct: 135 ERFWPGPLTLVLRRRADSPVSLLASAGLDSVAVRMPDHPVALALIKAAGRPLAAPSANRS 194

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T  +H+ +  +   I +++DGG  ++G+EST++++  E+   +LRPGG+  + L+
Sbjct: 195 GRVSPTRAEHV-AQCLEGRIAMVLDGGPCRVGVESTVLDLS-EEPPTLLRPGGITADELE 252

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
            A+   +   ++    P+SPG L+SHYAP   VRL A    P EAL+ FG  P       
Sbjct: 253 AALGRPIRRALETPDAPRSPGQLESHYAPALPVRLNATGAEPGEALLGFGPAP------- 305

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
              LNLS  G L EAA +LF  ++  D      IA   IP  GLG+AIN+RL+RAAAPR+
Sbjct: 306 DCVLNLSPKGDLSEAAAHLFAMLRALDRPDYRGIAVMPIPGRGLGLAINDRLKRAAAPRD 365

Query: 324 QSQ 326
             +
Sbjct: 366 TQK 368


>gi|163732340|ref|ZP_02139786.1| Sua5/YciO/YrdC family protein [Roseobacter litoralis Och 149]
 gi|161394638|gb|EDQ18961.1| Sua5/YciO/YrdC family protein [Roseobacter litoralis Och 149]
          Length = 331

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/314 (40%), Positives = 177/314 (56%), Gaps = 15/314 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A + L  G  +A PTETVYGL  D+RN  A+  ++E K RP+ NPLI HV D + 
Sbjct: 31  DGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVAAIFEAKGRPSFNPLIVHVLDATH 90

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLI 128
            ++       +  LA  FWPGPL+LVL L     +  L +A L T   RVP   T + L+
Sbjct: 91  ARRFCHWSDTAEKLASAFWPGPLSLVLPLTEGHGLSSLVSAGLSTVALRVPAHPTARALL 150

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +  P+A PSAN SG+IS T  +H+ S  +   +  I+D G  ++GLESTIV +  +  
Sbjct: 151 RAFDGPVAAPSANPSGKISPTTAQHV-SDGLGMRVGAILDDGPCRVGLESTIVGL--DGP 207

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             +LRPGGL  E ++R +  +L    +      +PG L SHYAP  +VRL A   +  E 
Sbjct: 208 ASLLRPGGLPAEEIERVLGQKLSR--ETEGKISAPGQLMSHYAPNGRVRLNAQRAHDGEV 265

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
            + FG +           LNLS +G L EAA  LF+ +   D +G S+IA + IP  GLG
Sbjct: 266 FLGFGEM--------TCDLNLSPSGDLTEAASVLFDCLHQLDATG-SAIAVAPIPRQGLG 316

Query: 309 IAINNRLERAAAPR 322
            AIN+RL+RAAAPR
Sbjct: 317 AAINDRLQRAAAPR 330


>gi|46200975|ref|ZP_00207919.1| COG0009: Putative translation factor (SUA5) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 328

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/302 (40%), Positives = 175/302 (57%), Gaps = 10/302 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ +  A+  +++ K RP+ NPLI HVS +        +   +  LA
Sbjct: 36  VAFPTETVYGLGGDATSDLAVAAIFKAKGRPSFNPLIAHVSSLDQAAALVEIGADAHRLA 95

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGHPLAIPSANRS 143
           + FWPGPLTLVL   + + +  L++A L +   R+P   T   LI+  G PLA PSAN S
Sbjct: 96  ERFWPGPLTLVLKRRAASPVSLLASAGLDSVAVRMPDHPTALALIKAAGRPLAAPSANLS 155

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T   H+ +  +   I +++DGG  ++G+EST++++  E+   +LRPGG+  E L+
Sbjct: 156 GRVSPTRADHV-AQCLDGRIAMVLDGGPCRVGVESTVLDL-TEEPPTLLRPGGVTAEELE 213

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
             +   L   ++    P+SPG L SHYAP   VRL A+   P EAL+ FG  P       
Sbjct: 214 AVLGRPLRRALETPDAPRSPGQLASHYAPSLPVRLDALAAEPGEALLGFGIAP------- 266

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
              LNLS  G L EAA +LF  ++  D      IA   IP  GLG+AIN+RL+RAAAPR+
Sbjct: 267 ECVLNLSPKGDLDEAAAHLFAMLRALDRPDYLGIAVMPIPERGLGLAINDRLKRAAAPRS 326

Query: 324 QS 325
            S
Sbjct: 327 PS 328


>gi|84515815|ref|ZP_01003176.1| Sua5/YciO/YrdC family protein [Loktanella vestfoldensis SKA53]
 gi|84510257|gb|EAQ06713.1| Sua5/YciO/YrdC family protein [Loktanella vestfoldensis SKA53]
          Length = 315

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 133/316 (42%), Positives = 174/316 (55%), Gaps = 13/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  L +A E L  G  ++ PTETVYGL  D+RN  A+  ++  K RP+ NPLI H+ DI
Sbjct: 12  DAAGLARAAEILTQGGLVSFPTETVYGLGADARNDRAVAAIFAAKGRPSFNPLIVHLGDI 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
           +   +    +  +  LA  FWPG LTLVL L     I  L TA L +   RVP     + 
Sbjct: 72  TAANEICDFNDDARCLAAAFWPGALTLVLPLRPQAGISRLVTAGLDSIAVRVPDHKVAQG 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +G P+A PSAN SG+IS T   H+   S+   I  ++DGG   +GLESTI  V C 
Sbjct: 132 LLAAFGGPVAAPSANASGRISPTTAAHV-RDSLGDRIDALVDGGPCFVGLESTI--VACL 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LR GG+  E +   +   L    +    P SPG L SHYAP  QVRL A      
Sbjct: 189 GTPTLLRAGGIPSEAIAACLGRPLAIS-ENPDAPVSPGQLLSHYAPIGQVRLNATARQDG 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E ++ FG      + +A   LNLS  G L EAA  LF+ +   D  GA+ IA + IP+HG
Sbjct: 248 EVMLGFG------LMDA--DLNLSPAGDLTEAAARLFDCLHQLDAMGAARIAVAPIPDHG 299

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL+RAAAPR
Sbjct: 300 LGRAINDRLKRAAAPR 315


>gi|83941398|ref|ZP_00953860.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36]
 gi|83847218|gb|EAP85093.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36]
          Length = 314

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 179/316 (56%), Gaps = 10/316 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A   L  G  +A+PTETVYGL  D+RN TA+  +YE K RP+ NPLI HV+D+
Sbjct: 8   DPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPLIIHVADV 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
              +++      +  LA  FWPGP+TLVL L     +  L TA L +   RVP   T + 
Sbjct: 68  DQARRYGRWSDTAEILASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVPAHPTARA 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++   G P+A PSAN SG+IS T  +H+L S +   I  ++D G   +GLESTI+ +  +
Sbjct: 128 ILRALGGPVAAPSANPSGKISATTAQHVL-SGLGGRIAAVVDDGPCTVGLESTIIGLN-Q 185

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            +  +LR GGL  E ++ A+   L+  V + +   +PG L SHYAP + VRL A      
Sbjct: 186 PRPTLLRAGGLPSEAIEAALGAPLD--VADGAEIIAPGQLASHYAPHASVRLNAQAATGG 243

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E  + FG       ++    L LS +G L EAA +LF+ +  A D     IA + IP  G
Sbjct: 244 EVYLGFGAASGSGPDD----LTLSASGDLVEAAAHLFDRLH-ALDRLRKPIAVAPIPETG 298

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL RAAAPR
Sbjct: 299 LGRAINDRLRRAAAPR 314


>gi|254459968|ref|ZP_05073384.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium HTCC2083]
 gi|206676557|gb|EDZ41044.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 310

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/310 (39%), Positives = 172/310 (55%), Gaps = 14/310 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A PTETVYGL  D+R+  A+ ++Y  K RP+ NPLI HV+D    +  
Sbjct: 14  RAAGLLSDGKLVAFPTETVYGLGADARDGEAVAKIYAAKGRPSFNPLIVHVADADAARTF 73

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
                 +  LA  FWPGP++LVL L     +  L TA L++   RVP G   + L+  +G
Sbjct: 74  GVWSDTAQRLADAFWPGPVSLVLPLRKHAGLSDLVTAGLESVALRVPAGHLAQDLLNAFG 133

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSAN SG+IS T  +H+  + +  +I  ++DGG   +G+ESTIV +       +L
Sbjct: 134 GPIAAPSANPSGRISPTTPEHVF-AGLDGKIAAVLDGGACAVGVESTIVGLTDHPT--LL 190

Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           R GG   ET++  +  EL   V  +    +PG L SHYAP + VRL        E  + F
Sbjct: 191 RAGGASRETIEERLCFELATPV--SGEISAPGQLASHYAPNASVRLNVEDWQSGEKTLGF 248

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
           G +           LNLS++G L EAA NLF ++ + D    + IA ++IP  GLG AIN
Sbjct: 249 GKM--------ACDLNLSESGNLIEAAANLFGHLHLLDAMEGTRIAVATIPETGLGAAIN 300

Query: 313 NRLERAAAPR 322
           +RL RAAAPR
Sbjct: 301 DRLRRAAAPR 310


>gi|83854875|ref|ZP_00948405.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842718|gb|EAP81885.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1]
          Length = 314

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 180/316 (56%), Gaps = 10/316 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A   L  G  +A+PTETVYGL  D+RN TA+  +YE K RP+ NPLI HV+D+
Sbjct: 8   DPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPLIIHVADV 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
              +++      +  LA  FWPGP+TLVL L     +  L TA L +   RVP   T + 
Sbjct: 68  DQARRYGRWSDTAEILASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVPAHPTARA 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++   G P+A PSAN SG+IS T  +H+L S +   I  ++D G   +GLESTI+ +  +
Sbjct: 128 ILRALGGPVAAPSANPSGKISATTAQHVL-SGLEGRIAAVVDDGPCTVGLESTIIGLN-Q 185

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            +  +LR GGL  E ++ A+   L+  V + +   +PG L SHYAP ++VRL A      
Sbjct: 186 PRPTLLRAGGLPSEAIEAALGAPLD--VADGAEIIAPGQLASHYAPHARVRLNAQAATDD 243

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E  + FG       ++    L LS +G L EAA +LF+ +  A D     IA + IP  G
Sbjct: 244 EVYLGFGAASGSGPDD----LTLSASGDLVEAAAHLFDRLH-ALDRLRKPIAVAPIPETG 298

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL RAAAPR
Sbjct: 299 LGRAINDRLRRAAAPR 314


>gi|158422031|ref|YP_001523323.1| Sua5 protein [Azorhizobium caulinodans ORS 571]
 gi|158328920|dbj|BAF86405.1| Sua5 protein [Azorhizobium caulinodans ORS 571]
          Length = 354

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/300 (40%), Positives = 169/300 (56%), Gaps = 4/300 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ NP A+  +Y  K RPA NPLI HV D++  ++   ++  ++ LA
Sbjct: 54  VAFPTETVYGLGADAGNPRAVAEVYAAKGRPAFNPLISHVPDLAAAEQLGVLNADAVKLA 113

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLV+    T  I  L+ A L T   RVP        +   G P+  PSANRS
Sbjct: 114 RAFWPGPLTLVVPCRDTDAICDLARAGLSTTALRVPNHPAALAFLAAAGRPVVGPSANRS 173

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G +S T   H++ + +   I  ++D G + +G+ESTIV+   ++  R+LRPGGL    ++
Sbjct: 174 GHVSPTTAAHVM-ADLDGRIDAVLDAGPTMVGVESTIVDCSGDEP-RLLRPGGLARADIE 231

Query: 204 RAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIEN 262
             +   L +    + + P +PG L SHYAP + VRL    V P EAL+ F        E+
Sbjct: 232 AVLGRPLPDAAGGDEAKPSAPGRLASHYAPNATVRLDVAEVRPGEALLTFAGHRPTGSES 291

Query: 263 AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           A    +LS  G L EAA  L+  ++  D  GA+ IA   +P  GLG AI +RL RAAAPR
Sbjct: 292 AAFVYDLSPAGDLAEAASRLYGALRAIDARGAAGIAVVPLPREGLGEAIADRLGRAAAPR 351


>gi|110680589|ref|YP_683596.1| Sua5/YciO/YrdC family protein [Roseobacter denitrificans OCh 114]
 gi|109456705|gb|ABG32910.1| Sua5/YciO/YrdC family protein [Roseobacter denitrificans OCh 114]
          Length = 314

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/314 (40%), Positives = 173/314 (55%), Gaps = 15/314 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A + L  G  +A PTETVYGL  D+RN  A+  ++E K RP+ NPLI HV D + 
Sbjct: 14  DGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVATVFEAKGRPSFNPLIVHVHDATQ 73

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            ++       +  LA  FWPGP++LVL L     +  L TA L T   RVP     + L+
Sbjct: 74  ARRFCHWSDSAEKLATAFWPGPVSLVLPLREEHGLSSLVTAGLPTVALRVPAHPAARALL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +  P+A PSAN SG+IS T  +H+ +  +  ++  I+D G   +GLESTIV +     
Sbjct: 134 RAFDGPVAAPSANPSGKISPTTARHV-AEGLGTKVAAILDDGPCSVGLESTIVGLDAAPC 192

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             +LRPGGL  E ++R +   L    +   +  +PG L SHYAP   VRL A      E 
Sbjct: 193 --LLRPGGLPAEEIERVLGQTLSRATEGKIS--APGQLVSHYAPDGHVRLNATSAQAGEV 248

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
           L+ FG++           LNLS+ G L EAA  LF  +   D +G  +IA + IP HGLG
Sbjct: 249 LLGFGHMDCD--------LNLSRDGDLTEAASALFESLHQLDATG-KAIAVAPIPQHGLG 299

Query: 309 IAINNRLERAAAPR 322
            AIN+RL RAAAPR
Sbjct: 300 AAINDRLRRAAAPR 313


>gi|114798799|ref|YP_760549.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomonas neptunium ATCC
           15444]
 gi|114738973|gb|ABI77098.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomonas neptunium ATCC
           15444]
          Length = 313

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/306 (42%), Positives = 171/306 (55%), Gaps = 13/306 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G  +A+PTETVYGLA D+ NP A+ RLY+ K RP  NPLI HVS   M  + A
Sbjct: 16  AVEILSGGGLVAMPTETVYGLAADAANPDAVVRLYQAKGRPRFNPLIAHVSGTEMASREA 75

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
              PL+  LA+ FWPGPLTLVL +     +  L+ + L+T   R P       LI  +G 
Sbjct: 76  VFSPLAERLAEKFWPGPLTLVLPVNPNGTVCDLARSGLQTVGLRCPSHPAANALITEFGR 135

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+  PSANRSG +S T  +H+ ++ +   I LI+DGG   +G+ESTI+ V+ E    +LR
Sbjct: 136 PVVAPSANRSGHVSPTRAEHV-AADLSDRIDLILDGGPCDVGIESTILAVEGETAT-LLR 193

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
            G +  + L+  I   LE       +  +PGMLKSHYAP +Q+RL A      E  + FG
Sbjct: 194 SGAIPSDVLETFIGKSLERASGLAIS--APGMLKSHYAPNAQLRLDAAAPEAGEGYLGFG 251

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
                        LNLS  G L EAA  LF  ++ A D+    IA + IP  GLG AIN+
Sbjct: 252 -------PGVREGLNLSPEGDLAEAATKLFAMLR-ALDARFDRIAIAPIPWEGLGEAIND 303

Query: 314 RLERAA 319
           RL RAA
Sbjct: 304 RLARAA 309


>gi|83591784|ref|YP_425536.1| translation factor SUA5 [Rhodospirillum rubrum ATCC 11170]
 gi|83574698|gb|ABC21249.1| translation factor SUA5 [Rhodospirillum rubrum ATCC 11170]
          Length = 322

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 181/324 (55%), Gaps = 17/324 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  AL +A   L AG  +A PTETVYGL  ++ + TA+  +Y  K RP+ NPLI H+ D+
Sbjct: 8   EGAALAQAARILAAGGLVAFPTETVYGLGANALDDTAVASIYAAKGRPSFNPLIVHLPDL 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
              + H +VD  +  LA  FWPGPLTLVL   +   +  L +A L TA  R P      +
Sbjct: 68  DAARAHVAVDGRAERLAAAFWPGPLTLVLPRRAGCRLSLLVSAGLDTAAIRCPDHPLALE 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+     PLA PSAN SG +S T   H+    +   + L++DGG   +GLEST++++   
Sbjct: 128 LLRACALPLAAPSANPSGAVSPTTAAHV-REGLGGRVDLVLDGGACGVGLESTVLDLSTP 186

Query: 187 KKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + + +LRPG +    L   +   ++       + + P+SPG L SHYAP ++VRL A  +
Sbjct: 187 RAL-LLRPGAISRAMLAEVLGEPVDRPSATPSDPTAPRSPGQLLSHYAPTARVRLNASAI 245

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI- 302
            P E L+ FG V       A  +L+LS +G L+EAA NLF+ ++  D    ++IA S I 
Sbjct: 246 GPGEVLLGFGPV-------AGATLSLSPSGDLREAAANLFSMLRALDADHPATIAVSPIP 298

Query: 303 ---PNHGLGIAINNRLERAAAPRN 323
              P  GL  AIN+RL RAAAPR 
Sbjct: 299 ETDPGDGLAAAINDRLRRAAAPRG 322


>gi|170740606|ref|YP_001769261.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium sp. 4-46]
 gi|168194880|gb|ACA16827.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium sp. 4-46]
          Length = 330

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 174/307 (56%), Gaps = 3/307 (0%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  +A PTETVYGL  D+ +  A+  +Y  K RP  NPLI H+ + +  ++    
Sbjct: 26  ELLRAGAVVAFPTETVYGLGGDATDGAAVAAIYAAKARPRFNPLIAHLPEAAAARREGVF 85

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
              +  LA+ FWPGPLTLV+       +  L+ A L +   RVP     + L+   G P+
Sbjct: 86  GAQASRLAEAFWPGPLTLVVPRAPEGSVCDLARAGLDSVALRVPAAPLARDLLRAVGRPI 145

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG++S T  +H+L+  +   I  ++DGG   +G+ESTIV    +   R+LRPG
Sbjct: 146 AAPSANRSGRVSPTRAEHVLAD-LDGRIAALLDGGPCPVGVESTIVAC-LDDAPRLLRPG 203

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  E L+  +   L       + P SPG+L SHYAPR+ +RL A  + P EA + FG  
Sbjct: 204 GVPREALEAVLGGPLRAAAPAGAAPVSPGLLASHYAPRAALRLDAAEIRPGEAALLFGGA 263

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
               +  A   L+LS  G L EAA  LF  ++  D SGA++IA + IP  GLG AI +RL
Sbjct: 264 RPPGLAAAAARLDLSPRGDLAEAASRLFAALRTLDASGAATIAVTPIPREGLGEAIADRL 323

Query: 316 ERAAAPR 322
            RAAAPR
Sbjct: 324 ARAAAPR 330


>gi|260429406|ref|ZP_05783383.1| Sua5/YciO/YrdC family protein [Citreicella sp. SE45]
 gi|260420029|gb|EEX13282.1| Sua5/YciO/YrdC family protein [Citreicella sp. SE45]
          Length = 315

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/318 (39%), Positives = 177/318 (55%), Gaps = 11/318 (3%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   + +A   L  G  +A PTETVYGL  ++ +  A+  ++E K RP+ NPLI H++D
Sbjct: 8   ADPEGIARAATLLRDGQLVAFPTETVYGLGGNALDDRAVAGIFEAKGRPSFNPLIVHLAD 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  VK+      L+   A++FWPGPLT+VL + +   +  L +A L +   R+P     +
Sbjct: 68  LDAVKELVQWSDLADVAAQVFWPGPLTMVLPIRAGAKVSKLVSAGLDSLAVRMPASPVAR 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+   G P+A PSANRSG+IS T  +H+L  ++   I  ++DGG   +GLESTI+ +  
Sbjct: 128 TLLRECGCPVAAPSANRSGRISPTRAEHVL-ETLDGRIAAVLDGGPCDVGLESTILGLT- 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             K  +LRPG +    L  A+   +    D      +PG L SHYAP ++VRL A   + 
Sbjct: 186 -GKPTLLRPGRVTAALLSEALGRPVMERRDRDQI-SAPGQLASHYAPNARVRLNASEWHE 243

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA + FG             LNLS  G L EAA NLF Y+   D SGA  IA   +P+ 
Sbjct: 244 GEARLGFGRT------EGDCDLNLSPAGDLVEAAANLFEYLHRLDSSGAEVIAVMPVPHV 297

Query: 306 GLGIAINNRLERAAAPRN 323
           GLG+AIN+RL RAAAPR 
Sbjct: 298 GLGVAINDRLSRAAAPRG 315


>gi|296448212|ref|ZP_06890109.1| Sua5/YciO/YrdC/YwlC family protein [Methylosinus trichosporium
           OB3b]
 gi|296254296|gb|EFH01426.1| Sua5/YciO/YrdC/YwlC family protein [Methylosinus trichosporium
           OB3b]
          Length = 323

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 179/307 (58%), Gaps = 5/307 (1%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D GL +A PTETVYGL  D+ +P A+ R+Y  K RP+ NPLI HV+D+      A++   
Sbjct: 21  DGGL-VAFPTETVYGLGADATSPAAVARIYRAKGRPSFNPLIAHVADLDAALAEAALPKA 79

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138
           ++ LA+  WPGPLTLV   ++   +  L+ A L +   RVP       LI   G P+A P
Sbjct: 80  AIRLAETLWPGPLTLVAPRVAAGSVCDLACAGLASVALRVPEAPVALALIRAAGRPIAAP 139

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SANRSG +S     H++   +   + L++DGG ++ G+ESTI++   E   R+LRPG L 
Sbjct: 140 SANRSGHVSPVTAAHVI-EDLDGAVDLVLDGGRAERGVESTILSFVGETP-RLLRPGALA 197

Query: 199 IETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258
            ETL+  +   LE      +   +PGM  SHYAPR+++RL A  +   EA + F      
Sbjct: 198 RETLEALLGRPLE-TTGAAAAVVAPGMTASHYAPRARLRLDASALREGEAGLDFAGALRA 256

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
             + A + ++LS  G L+EAA NLF +++  D  GA  IA + IP HGLG AI +RL RA
Sbjct: 257 RADAAAMIVDLSPKGDLEEAAANLFGHLRELDARGADHIAVAPIPAHGLGEAIADRLRRA 316

Query: 319 AAPRNQS 325
           AAPR ++
Sbjct: 317 AAPRTKA 323


>gi|330993932|ref|ZP_08317862.1| hypothetical protein SXCC_03827 [Gluconacetobacter sp. SXCC-1]
 gi|329758878|gb|EGG75392.1| hypothetical protein SXCC_03827 [Gluconacetobacter sp. SXCC-1]
          Length = 325

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/330 (40%), Positives = 180/330 (54%), Gaps = 14/330 (4%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           MQ   + D+ +   +A   L AG  +A  TETVYGL  D+RN  A+  +Y  K RP +NP
Sbjct: 1   MQTRLLPDTPHGREEAAAILRAGGLVAFGTETVYGLGADARNDHAVAAIYAAKGRPGINP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI H +         +  PL+  LA  FWPGPLTLVL       I P++TA L TA  RV
Sbjct: 61  LISHFTTADAAFAQVTPTPLARGLASRFWPGPLTLVLPRAPGCAISPIATAGLSTAAVRV 120

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P G  T+ L+   G P+  PSAN SG++S ++  H+L + +   I  ++D G   +G+ES
Sbjct: 121 PAGGNTRALLAACGFPVVAPSANPSGRVSPSDALHVL-AGLDGRIDAVLDCGPCHVGVES 179

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRA--ISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           TIV++     V +LRPGG+ +E L+ A  + V +       S P +PG L SHYAP   V
Sbjct: 180 TIVDLSGPAPV-LLRPGGVTLEALEAACGMPVAMPRASSNDSRPLAPGQLSSHYAPGLAV 238

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS- 295
           RL A  V   EAL+ FG      +  + +  NLS  G L+EAA  LF  ++  D  G   
Sbjct: 239 RLDADTVGADEALLAFG----PPLPGSPLVWNLSARGDLREAAARLFAGLRFLDMEGHRR 294

Query: 296 ---SIAFSSIPNHGLGIAINNRLERAAAPR 322
               IA   +P HGLG AI +RL RAA+PR
Sbjct: 295 GLVRIAVQPVPAHGLGRAIRDRLVRAASPR 324


>gi|254464111|ref|ZP_05077522.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium Y4I]
 gi|206685019|gb|EDZ45501.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium Y4I]
          Length = 316

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 179/324 (55%), Gaps = 16/324 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++ T++  + +A + L  G  ++ PTETVYGL  D+R   A+  +YE K RP+ NPLI
Sbjct: 7   EILAATEAG-IARAAQLLREGKLVSFPTETVYGLGADARQGKAVAAIYEAKGRPSFNPLI 65

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV      +++   +  +  LA  FWPGPLTLVL L     I PL TA L T   RVP 
Sbjct: 66  AHVHSAEAAQRYVEWNGTAETLAHAFWPGPLTLVLPLRGGHGISPLVTAGLDTLGVRVPA 125

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L+     P+A PSAN SG+IS T   H+  + +   I  I+D G   +GLESTI
Sbjct: 126 HPAAQALLRALDGPVAAPSANPSGKISPTTAAHV-KAGLDGRIAAILDDGACGVGLESTI 184

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP-QSPGMLKSHYAPRSQVRLR 239
           + +   + V +LRPGGL  E ++  +  +L   V +   P  +PG L SHYAP + VRL 
Sbjct: 185 IGLAGPEPV-LLRPGGLAAEEIEAVLGRKL--GVRDAHDPLTAPGQLLSHYAPGAPVRLN 241

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A      E  + FG        +    LNLS+ G L EAA NLF ++   D  G   IA 
Sbjct: 242 AAAPVKGELYLGFG--------HGACDLNLSERGDLAEAAANLFGHLHQLDALG-KPIAV 292

Query: 300 SSIPNHGLGIAINNRLERAAAPRN 323
           + IP HGLG AIN+RL RAAAPR+
Sbjct: 293 APIPEHGLGEAINDRLRRAAAPRD 316


>gi|163738876|ref|ZP_02146289.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis BS107]
 gi|161387681|gb|EDQ12037.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis BS107]
          Length = 315

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 172/312 (55%), Gaps = 13/312 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A + L  G  +A PTETVYGL  D+R   A+  LY  K RP+ NPLI HV  +   +
Sbjct: 16  ISTAADLLKEGQLVAFPTETVYGLGADARQTNAVEALYAAKGRPSFNPLIAHVHSVETAQ 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +H     ++  LA+ FWPGPLTLVL L     I PL TA L T   R+P     + L+  
Sbjct: 76  RHVIWSDIADTLAEAFWPGPLTLVLPLREDHGISPLVTAGLNTLGIRIPAHPAARALLSV 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSAN SG+IS T   H++ + +   I  ++D G   +G+ESTI+ +     + 
Sbjct: 136 LDGPVAAPSANPSGRISPTTAAHVI-AGLGGRIAAVVDDGPCGVGVESTIIGLATGTPL- 193

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           +LRPGGL  E ++  +   L +  D +    +PG L SHYAPR+ VRL        E  +
Sbjct: 194 LLRPGGLATEEIEAVLGHTL-HLRDASDPLTAPGQLLSHYAPRASVRLNVTTPQDGELYL 252

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG +           LNLS +G L+EAA  LF ++    D+ A  IA + IP+ GLG+A
Sbjct: 253 GFGAMECD--------LNLSASGDLREAAAQLFGHLHRL-DARAQPIAVAPIPDAGLGVA 303

Query: 311 INNRLERAAAPR 322
           IN+RL RAAAPR
Sbjct: 304 INDRLRRAAAPR 315


>gi|260576257|ref|ZP_05844249.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sp. SW2]
 gi|259021525|gb|EEW24829.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sp. SW2]
          Length = 318

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 172/313 (54%), Gaps = 13/313 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A+PTETVYGLA D+R    + R++  K RP  NPLI H+ +++  ++ 
Sbjct: 16  RAAAILRGGGLVAMPTETVYGLAGDARLDATVARIFAAKGRPGFNPLIVHLENLAQAREL 75

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
           A  D  +  LA+ FWPGPLTLVL   +   + PL +A L +   R+P     + L+  +G
Sbjct: 76  AVFDARAEALAQAFWPGPLTLVLPRRADAGLSPLVSAGLASVALRLPAHPVARALLAAFG 135

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PLA PSAN SG++S T   H+    +   I  I+DGG  ++G+ES+IV +       +L
Sbjct: 136 GPLAAPSANPSGRVSPTTSAHV-RDGLGGRIDAILDGGACEVGVESSIVGLTGPAT--LL 192

Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           RPGG+ +E L+ A+   L    D      +PG L SHYAP + VRL      P E  + F
Sbjct: 193 RPGGIPLEALEAALGSRLVTAADPAKI-TAPGQLASHYAPSAAVRLNVTSPLPDEVWVGF 251

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA--SSIAFSSIPNHGLGIA 310
           G            +L LS  G L EAA  LF+ ++ AD       +IAF+ +P  GLG A
Sbjct: 252 GPA------CPGAALTLSPNGDLVEAAAALFHILRRADALAGPNGAIAFAPVPETGLGRA 305

Query: 311 INNRLERAAAPRN 323
           IN+RL RAAAPR 
Sbjct: 306 INDRLRRAAAPRT 318


>gi|163741878|ref|ZP_02149268.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis 2.10]
 gi|161385051|gb|EDQ09430.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis 2.10]
          Length = 315

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 170/309 (55%), Gaps = 13/309 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + L  G  +A PTETVYGL  D+R   A+  LY  K RP+ NPLI HV  +   ++H 
Sbjct: 19  AADLLKEGQLVAFPTETVYGLGADARQTNAVEALYAAKGRPSFNPLIAHVHSVETAQRHV 78

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
               ++  LA+ FWPGPLTLVL L     I PL TA L T   R+P     + L+     
Sbjct: 79  IWSDIADTLAEAFWPGPLTLVLPLREDHGISPLVTAGLNTLGIRIPAHPAARALLSVLDG 138

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSAN SG+IS T   H++ + +   I  ++D G   +G+ESTI+ +     + +LR
Sbjct: 139 PVAAPSANPSGRISPTTAAHVI-AGLGGRIAAVVDDGPCGVGVESTIIGLATGTPL-LLR 196

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           PGGL  E ++  +   L +  D +    +PG L SHYAPR+ VRL        E  + FG
Sbjct: 197 PGGLATEEIEAVLGHTL-HLRDASDPLTAPGQLLSHYAPRASVRLNVTTPQDGELYLGFG 255

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
            +           LNLS +G L+EAA  LF ++    D+ A  IA + IP  GLG+AIN+
Sbjct: 256 AMECD--------LNLSASGDLREAAAQLFGHLHRL-DARAQPIAVAPIPEAGLGVAIND 306

Query: 314 RLERAAAPR 322
           RL RAAAPR
Sbjct: 307 RLRRAAAPR 315


>gi|56695212|ref|YP_165560.1| Sua5/YciO/YrdC family protein [Ruegeria pomeroyi DSS-3]
 gi|56676949|gb|AAV93615.1| Sua5/YciO/YrdC family protein [Ruegeria pomeroyi DSS-3]
          Length = 316

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/317 (41%), Positives = 174/317 (54%), Gaps = 14/317 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A E L  G  +A PTETVYGL  D+ N  A+  +Y  K RP+ NPLI HV+  
Sbjct: 12  DPDGIARAAELLRDGRLVAFPTETVYGLGGDATNGQAVAGIYAAKGRPSFNPLIAHVASA 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126
              ++H      +  LA  FWPGPLTLVL L +   I  L TA L T   RVP   T + 
Sbjct: 72  EAARRHVHWSETAERLATAFWPGPLTLVLPLRANHGISELVTAGLDTLAVRVPAHPTART 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+ T   P+A PSAN SG+IS T   H+L + +   I  ++D G   +G+ESTIV +   
Sbjct: 132 LLATLDRPVAAPSANPSGRISPTTADHVL-AGLDGRIAAVLDAGPCGVGVESTIVGLSGT 190

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LRPGGL  E ++  +   L     +     +PG L SHYAP+S VRL A   +  
Sbjct: 191 PI--LLRPGGLPTEEIEALLGQPLARH-QQGDNISAPGQLLSHYAPQSTVRLNARAPSDG 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E  + FG  P+   E      NLS +G L EAA NLF  +   D +G   IA + IP  G
Sbjct: 248 EVFLGFG--PMDCDE------NLSPSGNLTEAAANLFAALHRLDTTG-KPIAIAPIPERG 298

Query: 307 LGIAINNRLERAAAPRN 323
           LG+AIN+RL RAAAPR+
Sbjct: 299 LGLAINDRLRRAAAPRD 315


>gi|254293530|ref|YP_003059553.1| Sua5/YciO/YrdC/YwlC family protein [Hirschia baltica ATCC 49814]
 gi|254042061|gb|ACT58856.1| Sua5/YciO/YrdC/YwlC family protein [Hirschia baltica ATCC 49814]
          Length = 309

 Score =  209 bits (531), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/314 (41%), Positives = 181/314 (57%), Gaps = 20/314 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A + +  G  +AIPTETVYGLA D+ N  A+ R+Y  K RP+ NPLI HV+D+ M
Sbjct: 11  DTMEQAAQIIRDGGIVAIPTETVYGLAADATNGEAVARIYAAKGRPSFNPLISHVNDMEM 70

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LI 128
            ++ A+  P +L L + FWPGPLTLVL       +  L+TA L T   R P     + LI
Sbjct: 71  AEELANFSPAALELVEKFWPGPLTLVLPKTKYCPVSALATAGLDTIALRAPRHIVARGLI 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                PLA PSAN S  +S T  +H+ +  +   + LI+DGG  K G+EST+V+V  E+ 
Sbjct: 131 AAARCPLAAPSANPSEALSPTTAQHV-ADMLSGNVDLILDGGPCKTGVESTVVSVVGERP 189

Query: 189 VRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             +LRPG L   EIE +   +    E          SPGM++ HYAP +++RL AI    
Sbjct: 190 A-LLRPGALPRAEIEAITGPLDAPSEKIA-------SPGMMRRHYAPNAKLRLDAISPEK 241

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA + FG  P K+     ++ NLS +G L EAA NLF  ++I D      IA + IP+ 
Sbjct: 242 GEAYLGFG--PSKH----KVAANLSTSGDLLEAAANLFAMLRILDLQ-YDRIAIAPIPHE 294

Query: 306 GLGIAINNRLERAA 319
           GLG AIN+RL+RAA
Sbjct: 295 GLGEAINDRLKRAA 308


>gi|86139042|ref|ZP_01057613.1| Sua5/YciO/YrdC family protein [Roseobacter sp. MED193]
 gi|85824273|gb|EAQ44477.1| Sua5/YciO/YrdC family protein [Roseobacter sp. MED193]
          Length = 329

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 132/321 (41%), Positives = 178/321 (55%), Gaps = 11/321 (3%)

Query: 6   ITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + D++A  L +A + L  G  ++ PTETVYGL  D+R   A+  +Y  K RP+ NPLI H
Sbjct: 12  VLDASASDLTRAAQLLRQGKLVSFPTETVYGLGGDARRGDAVAAIYTAKGRPSFNPLIAH 71

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           VS +   K++   +  +  LA+ FWPGPLTLVL L     I  L TA L T   RVP   
Sbjct: 72  VSSVEAAKRYVIWNAWAETLAQAFWPGPLTLVLPLAPDHGISELVTAGLDTLALRVPAHP 131

Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           T +KL+     P+A PSAN SG+IS T   H++ + +   I  ++  G   +GLESTIV 
Sbjct: 132 TAQKLLAELDVPVAAPSANSSGRISPTTADHVM-AGLAGRIAAVVADGACSVGLESTIVG 190

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           +  +  + +LRPGGL  E ++  +   L    D      +PG L SHYAP+ +VRL A  
Sbjct: 191 LAGDAPM-LLRPGGLAAEQIEAVLGQPLA-SRDIHDPLTAPGQLLSHYAPQERVRLDA-- 246

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +PR      G  P          L+LS TG L +AA NLF ++   D  G   IA + I
Sbjct: 247 TSPRAGECYLGFGPYSGAR--ACDLSLSDTGDLAQAAANLFGHLHRLDAQGL-PIAVAPI 303

Query: 303 PNHGLGIAINNRLERAAAPRN 323
           P  GLGIAIN+RL RAAAPR+
Sbjct: 304 PETGLGIAINDRLRRAAAPRD 324


>gi|294084260|ref|YP_003551018.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663833|gb|ADE38934.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 325

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/332 (39%), Positives = 189/332 (56%), Gaps = 20/332 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           + +SI++ N++ +A + L AG  +A PTETVYGL  D+ N  A+  +++ K RP+ NPLI
Sbjct: 3   ECLSISE-NSVARAVDLLRAGQLVAFPTETVYGLGGDACNDHAVAGIFKTKGRPSFNPLI 61

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV+ I M         ++  LA  FWPG +T++LD      +  L+TA L     RVP 
Sbjct: 62  SHVATIDMAFTLGKKTAIAEILAYNFWPGAMTMILDRTKDCKVSMLTTAGLDKIAVRVPS 121

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +L+ ++G PLA PSAN SG+IS + V H++   +  +I LI+DGG  + GLESTI
Sbjct: 122 HEAATQLLSSFGGPLAAPSANPSGRISPSTVSHVI-DGLGGQIDLILDGGACESGLESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRS 234
           ++      V ILRPGG+  + +   ++      +E     ++   P SPG L SHYAP+ 
Sbjct: 181 IDCSANIPV-ILRPGGITRDAVNDVLNQAGHRLLEQTIAGNDDKRPVSPGQLASHYAPQL 239

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG- 293
            VR+ A +    E  I FG+     +  A   LNLS +G L EAA NLF  +  AD  G 
Sbjct: 240 GVRMNATNAEDTEIAIGFGS----QMHEA--PLNLSLSGNLTEAAANLFALLHKADKLGA 293

Query: 294 ---ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
              A+ IA + IP+H LG AIN+RL RA+APR
Sbjct: 294 KQNATHIAIAPIPDHELGEAINDRLRRASAPR 325


>gi|89070201|ref|ZP_01157529.1| Sua5/YciO/YrdC family protein [Oceanicola granulosus HTCC2516]
 gi|89044217|gb|EAR50368.1| Sua5/YciO/YrdC family protein [Oceanicola granulosus HTCC2516]
          Length = 317

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/326 (40%), Positives = 176/326 (53%), Gaps = 15/326 (4%)

Query: 1   MQIMSITDSNALRKACEFL--DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           M +    D   L +A   L  + G+ +A PTETVYGL   + +  A+ R++E K RPA N
Sbjct: 1   MTLRLALDDAGLAEAARLLRTEGGI-VAFPTETVYGLGARACDDRAVARVFEAKGRPAFN 59

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PLI H  D++ V+   ++ P +  LA  FWPGPLTLVL L     + PL T    T   R
Sbjct: 60  PLIVHCPDLATVETLCTLPPGAGRLAATFWPGPLTLVLPLRPDAPVSPLVTDGRDTLAVR 119

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +P     + +     PLA PSAN SG+IS T+  H+L + +   I  ++D G   +GLES
Sbjct: 120 LPDHPAARALLARTGPLAGPSANPSGRISPTSADHVL-AGLDGRIDAVLDAGPCPVGLES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV +  E    +LR GGL  E L+  +   L        T  +PG L SHYAPR  +RL
Sbjct: 179 TIVALLPEPT--LLRAGGLPTEALEACLGAPLAAHGGGEIT--APGQLASHYAPRGTLRL 234

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
            A    P E  + FG         +  +LNLS +G L EAA  LF  +   D +GA  IA
Sbjct: 235 DADAPAPGETYLGFGPA-------SPGALNLSPSGDLVEAAARLFAALHALDAAGARRIA 287

Query: 299 FSSIPNHGLGIAINNRLERAAAPRNQ 324
            + IP HGLG AIN+RL RAAAPR++
Sbjct: 288 VAPIPAHGLGRAINDRLRRAAAPRDE 313


>gi|85709789|ref|ZP_01040854.1| putative translation factor [Erythrobacter sp. NAP1]
 gi|85688499|gb|EAQ28503.1| putative translation factor [Erythrobacter sp. NAP1]
          Length = 315

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 179/313 (57%), Gaps = 13/313 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  + +A + L +G  +A+PTETVYGLA  + +  A+ ++Y  K RP  NPLI HV DI
Sbjct: 13  DAAGIARAADHLTSGELVAVPTETVYGLAARADSADAVAKIYAAKGRPDFNPLIVHVRDI 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
              +  A  D  ++ L + FWPGPLTLVL + S   I    TA L T   R P     + 
Sbjct: 73  EQAQGLAEFDDRAIDLVERFWPGPLTLVLPIRSDAAIAKAVTAGLPTIGLRQPSHKVMQA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++++ G PLA PSANRS  IS T  +H+ ++S+    PLI+DGG S+ GLESTIV ++  
Sbjct: 133 VLKSVGVPLAAPSANRSEHISPTRAEHV-TASLGDNAPLILDGGPSQSGLESTIVALRQS 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LRPG +  ETL+R +  E E    E S+ ++PG ++ HY+P   +RL A  V   
Sbjct: 192 GDWNLLRPGPVTKETLERILGPESEI---EGSSIEAPGQMERHYSPGKPMRLSASEVAQE 248

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E  I FG     ++E      NLS+ G L EAA  L+  + +A  S   +I+ + IP   
Sbjct: 249 EFFIGFG-----SLEG---DCNLSEAGDLNEAAARLYECLHLAAASDKPAISVAPIPYGE 300

Query: 307 LGIAINNRLERAA 319
           +G AIN+RL RAA
Sbjct: 301 VGRAINDRLRRAA 313


>gi|295687746|ref|YP_003591439.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter segnis ATCC 21756]
 gi|295429649|gb|ADG08821.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter segnis ATCC 21756]
          Length = 325

 Score =  206 bits (523), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 11/309 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L AG  + +PTETVYGL  D+ NPTA+  ++E K RP  NPLI HV+D+   +
Sbjct: 23  IEAAASALRAGGLVILPTETVYGLGADAANPTAVAAIFEAKGRPRFNPLIAHVADLETAE 82

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + A  D  +  LA+ FWPGPLT+V  +   + +  L+ A L T   RVP    ++ ++  
Sbjct: 83  RIADFDHRARDLAREFWPGPLTIVAPIKDASVVCDLARAGLDTVAIRVPGHPVSRAVLAA 142

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G  +  PSANRSG+ S T     ++ +  K     +DGG   +GLEST+V+V  + + R
Sbjct: 143 FGGAVVAPSANRSGRPSPTTYADAMAETGDKAA-AALDGGPCAVGLESTVVSV-LDGQAR 200

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           +LRPG +    L++ +    E   D     +SPG L  HYAP + VR+ A    P EA +
Sbjct: 201 LLRPGAVTRVQLQQIVGPLAEADDDAK---RSPGRLALHYAPDAPVRINAKAPKPGEAFL 257

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG        +     NLS TG L EAA NLF+Y++ AD +  S+IA + IP  GLG A
Sbjct: 258 AFGGG-----ASGEGVFNLSPTGDLAEAASNLFSYLRAADRTHPSAIAVAPIPEEGLGEA 312

Query: 311 INNRLERAA 319
           IN+RL RAA
Sbjct: 313 INDRLRRAA 321


>gi|58038771|ref|YP_190735.1| hypothetical protein GOX0296 [Gluconobacter oxydans 621H]
 gi|58001185|gb|AAW60079.1| Hypothetical protein GOX0296 [Gluconobacter oxydans 621H]
          Length = 337

 Score =  205 bits (521), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 184/330 (55%), Gaps = 17/330 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R+A E L AG  +A  TETVYGL   + + TA+ +++  K RP  NPLI H+ D   
Sbjct: 15  EGIRRAAELLKAGKLVAFGTETVYGLGAIASSDTAVAKIFAAKGRPRFNPLISHLPDAES 74

Query: 70  VKKHAS----VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
               AS    ++ ++  LA+ FWPGPLT+VL     + +  L+ A L T   RVP G T 
Sbjct: 75  AFAQASLSGRMEEIAHALAERFWPGPLTMVLPRSPNSTVSDLAAAGLSTLALRVPRGKTA 134

Query: 126 -KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L+   G P+A PSAN SG +S ++  H+L  S+   I  ++D G   IG+EST++++ 
Sbjct: 135 LALLREVGAPVAAPSANVSGTVSPSDAFHVL-RSLDGRIDAVLDSGPCSIGVESTVLDLT 193

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETS-TPQSPGMLKSHYAPRSQVRLRAIHV 243
            E  V +LRPGG+ +E L  A+   + +  D +   P SPG L SHYAP   VRL A  +
Sbjct: 194 REVPV-LLRPGGVTLEELT-ALCGPIRHPDDFSEIAPASPGRLASHYAPSLPVRLDATSI 251

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA----SSIAF 299
            P EA + FG      +  A ++ NLS++G L+EAA  LF  ++  D  G      +IA 
Sbjct: 252 APDEAQLAFGT----PLPGAGLTWNLSESGNLEEAAARLFAGLRFLDAEGTRRGLKTIAA 307

Query: 300 SSIPNHGLGIAINNRLERAAAPRNQSQRIV 329
             IP HGLG+AI +RL RAA PR  +  + 
Sbjct: 308 QPIPRHGLGLAIRDRLRRAAEPRTHAATLT 337


>gi|154251230|ref|YP_001412054.1| Sua5/YciO/YrdC/YwlC family protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154155180|gb|ABS62397.1| Sua5/YciO/YrdC/YwlC family protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 320

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/312 (39%), Positives = 174/312 (55%), Gaps = 13/312 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E +  G  +A PTETVYGL  D+ +  A+ R++E K RP  NPLI HV+D  + +K+   
Sbjct: 17  ELIREGKLVAFPTETVYGLGADASDEKAVARIFEAKGRPRFNPLIVHVADAQVAEKYVVF 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPL 135
              +  LA+ FWPG LTLVL   +   +  L +A L T   RVP   T + L+E    P+
Sbjct: 77  SAEAEALARHFWPGGLTLVLPRRADAKLSLLVSAGLDTVAIRVPAHETAQALLEAAKRPI 136

Query: 136 AIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           A PSAN SG++S T   H++ S    + + +++DGG  ++GLES+++    +    +LRP
Sbjct: 137 AAPSANASGKVSPTQAGHVMESLGHSDLLAMVLDGGACRLGLESSVIGFP-QGIPTLLRP 195

Query: 195 GGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           G +  E ++  +   L         +   SPG L+SHYAP + +RL A    P E L+ F
Sbjct: 196 GAVAREEIEAVLGGRLADADAAAGEAGRASPGQLESHYAPGAPLRLDAAEAGPDEVLLGF 255

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIPNHGLGIAI 311
           G         A  S+NLS +G L EAA NLF  ++  D  +G   IA S IP  GLG AI
Sbjct: 256 G-------PEAKSSMNLSASGDLTEAAANLFAMLRALDATAGGKRIAVSPIPMEGLGEAI 308

Query: 312 NNRLERAAAPRN 323
           N+RL+RAAAPR 
Sbjct: 309 NDRLKRAAAPRG 320


>gi|239948185|ref|ZP_04699938.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922461|gb|EER22485.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 312

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/318 (40%), Positives = 183/318 (57%), Gaps = 19/318 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E++ +G  + +PTETVYG+  D+ N  A  ++++ K RPA+NPLI HV+ I   K
Sbjct: 2   ISKAVEYIKSGKVVVLPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + L+  +A+ FWPGPL++V+ L    +I P  T  L T   R+P      +LI  
Sbjct: 62  EIGEFNDLATKIAEKFWPGPLSIVVPLKVNANIAPSVTVGLNTIAIRMPSYPLALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHIL-----SSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            G P+A PSAN S  IS TNV+H+      ++ I    P I     S+ GLESTI++   
Sbjct: 122 SGVPIAAPSANPSNYISPTNVEHVTKHFSENAEIFILAPEIYQ---SEYGLESTIIDTTT 178

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
                ILR G +  E L+  + V++     ETST ++PGML +HY+P+  VRL AI++  
Sbjct: 179 VTPT-ILREGFITAEILEEVLGVKV-LKASETSTIKAPGMLATHYSPKVPVRLNAINLED 236

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA----SSIAFSS 301
           +E  + FGN    N+     SLNLS  G L EAA NL+ Y++I DD  A    SSIA   
Sbjct: 237 KEIGLNFGN---SNLTGK-FSLNLSAKGNLIEAAANLYAYLRILDDYAAAHDVSSIAVVP 292

Query: 302 IPNHGLGIAINNRLERAA 319
           IP   +G AIN+RL+RAA
Sbjct: 293 IPQVNIGAAINDRLKRAA 310


>gi|209964929|ref|YP_002297844.1| Sua5 [Rhodospirillum centenum SW]
 gi|209958395|gb|ACI99031.1| Sua5 [Rhodospirillum centenum SW]
          Length = 326

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 167/303 (55%), Gaps = 11/303 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ N  A+  ++E K RP  NPLI HV D     +  +VD  + H  
Sbjct: 30  VAFPTETVYGLGADAGNDRAVASIFEAKGRPHFNPLIVHVPDDGAAGRLVTVDERARHAM 89

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           +++WPGPLTLVL       +  L +A L T   R P     + L+   G P+A PSANRS
Sbjct: 90  EMWWPGPLTLVLPRRPDAPLSLLVSAGLDTVAVRCPGHPVARALLAAAGRPVAAPSANRS 149

Query: 144 GQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           G +S T   H+          ++ LI+ GG   IGLEST++++  E+ + +LRPG +  E
Sbjct: 150 GHVSPTTPLHVAEEFPDGAGGKLRLILAGGRCPIGLESTVLDLTGERPL-LLRPGSVTRE 208

Query: 201 TLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
            L+  +  V+     D     ++PGML SHYAP   VRL A    P EA + FG  P + 
Sbjct: 209 ELEAVLGPVDRATAADGV---KAPGMLTSHYAPALPVRLEAAAPEPDEAFLAFG--PDQF 263

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           I      LNLS TG L EAA NLF  ++  D  GA  IA   +P  GLG AIN+RL RAA
Sbjct: 264 IRGGRERLNLSPTGDLHEAAANLFAMLRALDKPGARGIAVMPVPETGLGAAINDRLRRAA 323

Query: 320 APR 322
           APR
Sbjct: 324 APR 326


>gi|157964998|ref|YP_001499822.1| Sua5/YciO/YrdC/YwlC family translation factor protein [Rickettsia
           massiliae MTU5]
 gi|157844774|gb|ABV85275.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein
           [Rickettsia massiliae MTU5]
          Length = 312

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 178/315 (56%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +   ++ L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 62  EIGELNDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN +  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPANYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETST ++PGML  HY+P+  VRL AI++  +E 
Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSTIKAPGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + FGN  +        SLNLS  G   EAA NL+ Y++I DD  AS     IA S IP 
Sbjct: 240 GLNFGNSNL----TGRFSLNLSVKGNFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|326386145|ref|ZP_08207769.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209370|gb|EGD60163.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370]
          Length = 320

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/312 (40%), Positives = 171/312 (54%), Gaps = 12/312 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +A E +  G  +A+PTETVYGLA  +    A+  +Y  K RP  NPLI HV+DI+  
Sbjct: 20  AIVRAAEVIREGGLVAVPTETVYGLAARADRDEAVAGIYRAKGRPDFNPLIVHVADIAGA 79

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++ A +D  +  L + FWPGPLTLV+       +    +A L T   R P     + LIE
Sbjct: 80  ERLAHLDATARKLIEAFWPGPLTLVVPRREDAGLSAAVSAGLPTVALRCPAHPVMRALIE 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSANRSG +S T   H+  SS+   + LI+DGG    GLESTIV V+   + 
Sbjct: 140 AAGVPLAAPSANRSGGVSPTTADHVF-SSLGHRVDLILDGGTCARGLESTIVGVRPGGRW 198

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LRPG ++ ETL   +  E E         ++PG L SHYAP   VRL A      E +
Sbjct: 199 TLLRPGPIDRETLAALLGHENEEMA--RGGIEAPGQLASHYAPGKPVRLGADAPEADEFM 256

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           I FG  P+K        ++LS++G   EAA  L+  +     +  S IA ++IP  G+G 
Sbjct: 257 IGFG--PVKG------DVSLSESGDPAEAAARLYACLHAGAAAPQSRIAIAAIPGEGIGE 308

Query: 310 AINNRLERAAAP 321
           AIN+RL RAA P
Sbjct: 309 AINDRLRRAAVP 320


>gi|162149092|ref|YP_001603553.1| hypothetical protein GDI_3322 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787669|emb|CAP57265.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 338

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 175/315 (55%), Gaps = 13/315 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L AG  +A  TETVYGL  D+ N TA+ R++  K+RP  NPLI H  D       
Sbjct: 29  RAADLLRAGGLVAFGTETVYGLGADATNDTAVARIFAAKERPRFNPLISHFPDAEAAFAQ 88

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           A+ + ++  LA+ FWPGPLT+VL     + I  L+ A L +   RVP G  T  L+   G
Sbjct: 89  AAPNDVARRLAERFWPGPLTMVLPRQPGSTISDLAAAGLPSVAVRVPRGAITTALLRAVG 148

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSAN SG++S ++  H+L   +   I  ++D G   +G+EST++++     + +L
Sbjct: 149 RPVAAPSANLSGRVSPSDAYHVL-RGLSGRIDAVLDSGPCPVGVESTVLDLTGTAPM-LL 206

Query: 193 RPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           RPGG+ +E L   +   + +  D   T P SPG L SHYAP   VRL A  V   EAL+ 
Sbjct: 207 RPGGVTVEALSE-VCGPISHPDDYADTLPLSPGRLASHYAPGLPVRLDAHDVAADEALLA 265

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPNHGL 307
           FG      +  A +  NLS  G+L EAA  LF  ++  D  GA      IA   IP  GL
Sbjct: 266 FG----PELPGAGLVWNLSPAGRLDEAAARLFAGLRFLDSEGARRGLVRIAAMPIPRVGL 321

Query: 308 GIAINNRLERAAAPR 322
           G+AI +RL RAA+PR
Sbjct: 322 GMAIRDRLRRAASPR 336


>gi|209545165|ref|YP_002277394.1| Sua5/YciO/YrdC/YwlC family protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532842|gb|ACI52779.1| Sua5/YciO/YrdC/YwlC family protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 323

 Score =  201 bits (512), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 175/315 (55%), Gaps = 13/315 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L AG  +A  TETVYGL  D+ N TA+ R++  K+RP  NPLI H  D       
Sbjct: 14  RAADLLRAGGLVAFGTETVYGLGADATNDTAVARIFAAKERPRFNPLISHFPDAEAAFAQ 73

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           A+ + ++  LA+ FWPGPLT+VL     + I  L+ A L +   RVP G  T  L+   G
Sbjct: 74  AAPNDVARRLAERFWPGPLTMVLPRQPGSTISDLAAAGLPSVAVRVPRGAITTALLRAVG 133

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSAN SG++S ++  H+L   +   I  ++D G   +G+EST++++     + +L
Sbjct: 134 RPVAAPSANLSGRVSPSDAYHVL-RGLSGRIDAVLDSGPCPVGVESTVLDLTGTAPM-LL 191

Query: 193 RPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           RPGG+ +E L   +   + +  D   T P SPG L SHYAP   VRL A  V   EAL+ 
Sbjct: 192 RPGGVTVEALSE-VCGPISHPDDYADTLPLSPGRLASHYAPGLPVRLDAHDVAADEALLA 250

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPNHGL 307
           FG      +  A +  NLS  G+L EAA  LF  ++  D  GA      IA   IP  GL
Sbjct: 251 FG----PELPGAGLVWNLSPAGRLDEAAARLFAGLRFLDSEGARRGLVRIAAMPIPRVGL 306

Query: 308 GIAINNRLERAAAPR 322
           G+AI +RL RAA+PR
Sbjct: 307 GMAIRDRLRRAASPR 321


>gi|34581094|ref|ZP_00142574.1| hypothetical protein [Rickettsia sibirica 246]
 gi|229587215|ref|YP_002845716.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein
           [Rickettsia africae ESF-5]
 gi|28262479|gb|EAA25983.1| unknown [Rickettsia sibirica 246]
 gi|228022265|gb|ACP53973.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein
           [Rickettsia africae ESF-5]
          Length = 312

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    D L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 62  EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETST ++ GML  HY+P+  VRL AI++  +E 
Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + F N  +        SLNLS  G   EAA NL+ Y++I DD  AS     IA S IP 
Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G+AIN+RL+RAA
Sbjct: 296 VNIGVAINDRLKRAA 310


>gi|238651093|ref|YP_002916951.1| hypothetical protein RPR_07435 [Rickettsia peacockii str. Rustic]
 gi|238625191|gb|ACR47897.1| hypothetical protein RPR_07435 [Rickettsia peacockii str. Rustic]
          Length = 312

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    D L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 62  EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETST ++ GML  HY+P+  VRL AI++  +E 
Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + F N  +       +SLNLS  G   EAA NL+ Y++I DD  AS     IA S IP 
Sbjct: 240 GLNFSNSNL----TGRVSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|103487254|ref|YP_616815.1| Sua5/YciO/YrdC/YwlC [Sphingopyxis alaskensis RB2256]
 gi|98977331|gb|ABF53482.1| translation factor SUA5 [Sphingopyxis alaskensis RB2256]
          Length = 315

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/299 (40%), Positives = 165/299 (55%), Gaps = 13/299 (4%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G P+A+PTETVYGLA D+R+   + R+Y  K RP  NPLI HV +++  +          
Sbjct: 28  GQPVAVPTETVYGLAADARSADGVARIYAAKGRPDFNPLIVHVPNLAAAETLGQFGAAER 87

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            LA  FWPGPLTLV+  ++   +  ++TA L T   RVP     + L+   G PLA PSA
Sbjct: 88  ALATRFWPGPLTLVVPRVAGCPVASIATAGLDTIALRVPGHRAMQALLAGTGAPLAAPSA 147

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG++S T   H+L +S+   I L+ID G ++ G+ESTI  VQ +  + +LRPG +   
Sbjct: 148 NASGRVSPTRADHVL-ASLDGRIALVIDDGPTRAGVESTIARVQ-DGAIEVLRPGPVTAA 205

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
            L  A++  L     + S   +PGML SHYAP   VRL A+     E  I FG +     
Sbjct: 206 ML--AMASGLPVIERKGSDIVAPGMLASHYAPGKPVRLGAVEFADDEFGIGFGGL----- 258

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                  +LS  G L EAA  LF+ +     S   +IA ++IP  GLG AIN+RL RAA
Sbjct: 259 ---AGDYDLSAAGDLTEAAARLFDALHAGAASAKPNIAVAAIPVEGLGAAINDRLARAA 314


>gi|15893238|ref|NP_360952.1| hypothetical protein RC1315 [Rickettsia conorii str. Malish 7]
 gi|15620456|gb|AAL03853.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 312

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/315 (40%), Positives = 175/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    D L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 62  EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETST ++ GML  HY+P+  VRL AI++  +E 
Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + F N  +        SLNLS  G   EAA NL+ Y++I DD  AS     IA S IP 
Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|157826326|ref|YP_001494046.1| hypothetical protein A1C_06575 [Rickettsia akari str. Hartford]
 gi|157800284|gb|ABV75538.1| hypothetical protein A1C_06575 [Rickettsia akari str. Hartford]
          Length = 312

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/315 (38%), Positives = 176/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA NPLI HV  I   K
Sbjct: 2   VSKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPASNPLIVHVFSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + L++ +A+ FW GPL++V+ L    +I P + A L T   R+P      +LI  
Sbjct: 62  EIGEFNDLAIKIAEKFWSGPLSIVVPLKENANIAPSAAAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  S+ GLESTI++      
Sbjct: 122 SGVPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSEYGLESTIIDTTTATP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G + +E L+  + V++     ETS  ++PGML  HY+P+  +RL AI++   E 
Sbjct: 182 T-ILREGFITVEILEEVLRVKV-LKASETSAIKAPGMLAKHYSPKVPIRLNAINLEYNEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA----SSIAFSSIPN 304
            + FGN  +        SLNLS  G L EAA NL+ Y++I DD  A    S IA + IP 
Sbjct: 240 SVNFGNSNL----TGRFSLNLSTKGNLIEAAANLYAYLRILDDYAAAHDVSGIAVAPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 ENIGAAINDRLKRAA 310


>gi|87198152|ref|YP_495409.1| translation factor SUA5 [Novosphingobium aromaticivorans DSM 12444]
 gi|87133833|gb|ABD24575.1| translation factor SUA5 [Novosphingobium aromaticivorans DSM 12444]
          Length = 315

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/314 (38%), Positives = 179/314 (57%), Gaps = 12/314 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ L  A + + AG  +A+PTETVYGLA  + +  A+  +Y  K RP  NPLI HV D+
Sbjct: 13  DNHGLEHAAQVIAAGGTVAVPTETVYGLAARADDDAAVAGIYRAKGRPDFNPLIVHVPDV 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +  +  A  D  +  LA  FWPGPLT+VL       +    +A L T   R P     + 
Sbjct: 73  TAAEGLAVFDKRARALANAFWPGPLTMVLPRREGAALASAVSAGLPTVALRCPAHPVMQA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G PLA PSANRSG +S T+  H+ ++S+ + + LI+DGG ++ G+ESTIV ++ +
Sbjct: 133 LLKNCGLPLAAPSANRSGGVSPTSAAHV-AASLGQRVDLILDGGETRQGIESTIVGMRDD 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               ILRPG +   ++   +  + +  V  ++  ++PG L SHYAP   VRL A      
Sbjct: 192 GTWAILRPGPITEASIAAVLGGKSD--VVTSAKIEAPGQLASHYAPGKPVRLNATQAGEG 249

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E LI FG+V        +  +NLS +G L EAA  L++ + +   +   +IA + IP+ G
Sbjct: 250 EFLIGFGSV--------VGDVNLSTSGDLAEAAARLYSCLHLGAAASEPAIAVAPIPDEG 301

Query: 307 LGIAINNRLERAAA 320
           +G AIN+RL RAAA
Sbjct: 302 IGTAINDRLRRAAA 315


>gi|148259247|ref|YP_001233374.1| Sua5/YciO/YrdC/YwlC family protein [Acidiphilium cryptum JF-5]
 gi|146400928|gb|ABQ29455.1| translation factor SUA5 [Acidiphilium cryptum JF-5]
          Length = 322

 Score =  198 bits (503), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 130/312 (41%), Positives = 178/312 (57%), Gaps = 11/312 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  +A  TETVYGL  D+ N +A+  +YE K RP  NPLI H  D     +HA+ 
Sbjct: 17  ELLRAGELVAFATETVYGLGADATNASAVAAIYEAKGRPRFNPLISHFPDADAAFRHAAA 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
           D  +   A+ FWPGPLTLVL     +DI  L+TA L +   RVP  G  + L+   G P+
Sbjct: 77  DARAREAAQAFWPGPLTLVLPRRDESDIAALATAGLSSVAVRVPGHGIARALLAATGRPV 136

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG++S T   H++ + +   I  I++ G  ++GLES IV++     V +LRPG
Sbjct: 137 AAPSANRSGRLSPTRPAHVI-AGLEGRIAAILESGACEVGLESAIVDLTGATPV-LLRPG 194

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  ETL+ A+   +    +  +  ++PGML SHYAP   +RL A      EA + FG  
Sbjct: 195 GISRETLE-AVLGPVSIASEMGAAVKAPGMLASHYAPVLPMRLGATAPEDGEAWLGFG-- 251

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYM----KIADDSGASSIAFSSIPNHGLGIAI 311
            I+      +S NLS  G L EAA  LF+ +      A+ +G   IA + +P  GLG AI
Sbjct: 252 -IEPPTLPPVSRNLSPAGDLVEAAARLFDSLHELDAAAELAGLQRIAVARVPERGLGAAI 310

Query: 312 NNRLERAAAPRN 323
           N+RL RAAAPR+
Sbjct: 311 NDRLARAAAPRS 322


>gi|67459737|ref|YP_247361.1| putative translation factor protein [Rickettsia felis URRWXCal2]
 gi|67005270|gb|AAY62196.1| Putative translation factor protein [Rickettsia felis URRWXCal2]
          Length = 361

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/315 (39%), Positives = 176/315 (55%), Gaps = 14/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
             KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HVS I   K
Sbjct: 52  FSKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVSSIEQAK 111

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + L+  +A+ FWPGPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 112 EIGEFNDLATKIAEKFWPGPLSIVVSLKENANIAPSVTAGLNTIAIRIPSYPLALELIRQ 171

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  S+ GLESTI++      
Sbjct: 172 SGVPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSEYGLESTIIDTTTATP 231

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + V++    ++    ++PGML  HY+P   VRL A ++  RE 
Sbjct: 232 T-ILREGFITAEILEEVLGVKVFKVTNDVV--KAPGMLAKHYSPNVPVRLNATNLEDREI 288

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + FGN    N+     SLNLS  G+L EAA NL+ Y++I DD  AS     IA + IP 
Sbjct: 289 GLNFGN---SNLTGK-FSLNLSLKGELIEAAANLYAYLRILDDYAASHDVRGIAVAPIPR 344

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 345 VNIGAAINDRLKRAA 359


>gi|157829148|ref|YP_001495390.1| hypothetical protein A1G_07205 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801629|gb|ABV76882.1| hypothetical protein A1G_07205 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 311

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/315 (39%), Positives = 175/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    D L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI+ 
Sbjct: 62  EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIKQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIIDTTTVTP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETS  ++ GML  HY+P+  VRL AI++  +E 
Sbjct: 182 T-ILREGFITAEILGEILGIEV-LKASETSIIKASGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + F N  +        SLNLS  G   EAA NL+ Y++I DD  AS     IA S IP 
Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|311745837|ref|ZP_07719622.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
 gi|126576040|gb|EAZ80318.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
          Length = 321

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/316 (41%), Positives = 178/316 (56%), Gaps = 15/316 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA  FLD G  +AIPTETVYGLA ++ NP A+  ++E K RP+ +PLI H S +  VK  
Sbjct: 10  KAKRFLDEGKLVAIPTETVYGLAGNALNPLAVASIFETKNRPSFDPLIIHTSSMDRVKDF 69

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIET 130
               P  L+ L K  WPGPLTL   LL    I P L T+ L     R+P    T +L+E+
Sbjct: 70  VEEIPDPLYKLGKSIWPGPLTL---LLPRKAIIPDLVTSGLDRVAIRIPNHPLTLELLES 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PLA PSAN  G IS T  +H+  + +   IP I+DGG  ++GLESTIV ++ E +V 
Sbjct: 127 LDFPLAAPSANPFGYISPTQPRHV-EAQLGDSIPYILDGGNCQVGLESTIVGME-EGQVV 184

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           I R GGLE+  ++  I   ++     TS PQ+PG+L SHYAPR    L  + +   +  +
Sbjct: 185 IYRLGGLELNEIEDLIG-PVQVKSHSTSNPQAPGLLASHYAPRKPFVLGDLDLLIEKYSL 243

Query: 251 RFGNVPIKNIENAIIS------LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
              +  + ++E +         + LSK G LKEAA NLF  M+  D+     I    +P 
Sbjct: 244 EGTSFALISLEKSFSDIPEAHQIALSKNGDLKEAAKNLFASMRQLDELDVEVILAEKMPA 303

Query: 305 HGLGIAINNRLERAAA 320
            GLG AIN+RL+RAAA
Sbjct: 304 KGLGQAINDRLKRAAA 319


>gi|157804239|ref|YP_001492788.1| bifunctional N5-glutamine S-adenosyl-L-methionine-dependent
           methyltransferase/tRNA (m7G46) methyltransferase
           [Rickettsia canadensis str. McKiel]
 gi|157785502|gb|ABV74003.1| bifunctional N5-glutamine S-adenosyl-L-methionine-dependent
           methyltransferase/tRNA (m7G46) methyltransferase
           [Rickettsia canadensis str. McKiel]
          Length = 312

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/315 (38%), Positives = 180/315 (57%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HV+ I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + L+  +A+ FW GPL++V+ L    +I    TA L T   R+P      +LI  
Sbjct: 62  EIGEFNDLATKIAEKFWSGPLSIVVPLKKNVNIALSVTAGLNTIAIRMPSYPLALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       E   I+   I  S+ GLESTI++      
Sbjct: 122 SGKPIAAPSANPSNYISPTNAEHVTKHFKDNEEIFILAPEIYQSEYGLESTIIDTTTATP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             +LR G +  E L++   +E+     ETST ++PGML  HY+P+  +RL A ++  +E 
Sbjct: 182 T-LLREGFIMSEVLEKTFGIEI-LKASETSTIKAPGMLAKHYSPKVPIRLNATNLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS----IAFSSIPN 304
            + FGN   +N++   + LNLS  G L EAA NL+ Y++I DD  AS     IA + +P+
Sbjct: 240 GLNFGN---RNLKGRFL-LNLSPKGDLIEAAANLYAYLRILDDYAASHDIEYIAVAPVPS 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|149185276|ref|ZP_01863593.1| putative translation factor [Erythrobacter sp. SD-21]
 gi|148831387|gb|EDL49821.1| putative translation factor [Erythrobacter sp. SD-21]
          Length = 312

 Score =  196 bits (498), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/316 (38%), Positives = 171/316 (54%), Gaps = 18/316 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   + +A E L AG  +A+PTETVYGLA  + +  A+  +YE K RP+ NPLI HV+ 
Sbjct: 12  ADKGGMARAAEILRAGGLVAVPTETVYGLAARADDMAAVSLIYEAKGRPSFNPLIVHVAS 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + + +  A   P +  LA+  WPGPLTLVL   +   +    TA L+T   R+P     +
Sbjct: 72  MKVARNLAEFSPEAEALAEAHWPGPLTLVLPSRTDAKLADTVTAGLETVAVRMPNHPIMR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K++++   PLA PSANRSG IS T  +H+L +S+   I  ++DGG  + G+ESTI  V+ 
Sbjct: 132 KILQSVDVPLAAPSANRSGFISPTTAEHVL-TSLDGRIDAVLDGGECRAGVESTIAAVRA 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           + +V +LRPG ++++    A         D     ++PG L SHYAP   VRL  I    
Sbjct: 191 DGRVEVLRPGPVQLDAGAMA--------QDGVGKIEAPGQLASHYAPGKPVRLDVIRSVE 242

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            E  I FG V            +LS  G L+EAA  L+  +     S    IA + IP  
Sbjct: 243 DEFYIGFGKV--------TGDCSLSVGGDLEEAASRLYACLHEGAASHKPRIAIAPIPAE 294

Query: 306 GLGIAINNRLERAAAP 321
           G+G AIN+R+ RAA P
Sbjct: 295 GIGRAINDRIRRAATP 310


>gi|85375447|ref|YP_459509.1| putative translation factor [Erythrobacter litoralis HTCC2594]
 gi|84788530|gb|ABC64712.1| putative translation factor [Erythrobacter litoralis HTCC2594]
          Length = 314

 Score =  195 bits (495), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 120/314 (38%), Positives = 168/314 (53%), Gaps = 13/314 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A   ++AG  +A+PTETVYGLA  + +P A+  +Y  K RP+ NPLI HV D 
Sbjct: 13  DRHGVAQAARIINAGGLVAVPTETVYGLAARADDPDAVAAIYAAKGRPSFNPLIVHVLDP 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +   +   +D  +  LA  FWPGPLT+VL L    D+    TA L T   RVP     ++
Sbjct: 73  AAAGRLVEMDDKAQALAGRFWPGPLTMVLPLRDAADVAGAVTAGLPTLAVRVPAHPLMRE 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+     PLA PSAN S  +S T+  H+L  ++   I  ++DGG    GLESTIV ++ +
Sbjct: 133 LLTLAEAPLAAPSANVSESVSPTSPGHVL-KTLDGRIDAVLDGGECIAGLESTIVALRGD 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LRPG +  E L  A+  E       T   ++PG L  HY+P   VRL A+     
Sbjct: 192 GAWSLLRPGPIAKEALIEALGAEPSGT---TEGVEAPGQLARHYSPGKPVRLGAVEAAED 248

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E L+ FGN             +LS +G   EAA  L+  +    +S  + IA + IP+ G
Sbjct: 249 EFLLGFGNT--------AGDWSLSDSGDPAEAAARLYAGLHRGAESDKARIAVAPIPDEG 300

Query: 307 LGIAINNRLERAAA 320
           LG AIN+RL RAAA
Sbjct: 301 LGAAINDRLRRAAA 314


>gi|89056386|ref|YP_511837.1| translation factor SUA5 [Jannaschia sp. CCS1]
 gi|88865935|gb|ABD56812.1| translation factor SUA5 [Jannaschia sp. CCS1]
          Length = 314

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/320 (38%), Positives = 173/320 (54%), Gaps = 26/320 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A E L  G  +A+PTETVYGLA D+RN  A+ R++  K RP  NPLI HV  +
Sbjct: 12  DVAGIARAAEVLRDGGLLALPTETVYGLAADARNGAAVARIFAAKGRPTFNPLIVHVVSL 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              ++   V+  +  LAK FWPGP+TLVL   S   +  L +  L T   RVP     + 
Sbjct: 72  ETAEELVEVNAQAHALAKAFWPGPMTLVLP--SKGRVADLISGGLDTLAVRVPAHPLARA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++  +G P+A PSAN SGQIS T   H++ + +   +  ++DGG   +GLESTI+    E
Sbjct: 130 VLGAFGGPVAAPSANPSGQISPTMAAHVV-AGLGSAVEAVLDGGACGVGLESTIL-APSE 187

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSHYAPRSQVRLRAIHV 243
             VR+LR GG+  E ++  +       V    TP   ++PG ++ HYAPR+QV L ++  
Sbjct: 188 GGVRLLREGGVSREAVEAVVG-----PVVADLTPGRIEAPGQMERHYAPRTQVVLGSV-A 241

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DSGASSIAF 299
            P + +I FG V             LS+ G L EAA  LF  +  AD      GA  I  
Sbjct: 242 TPGDVMIGFGAVGGD--------FTLSERGDLVEAAERLFATLHAADTLALTRGAQVIRV 293

Query: 300 SSIPNHGLGIAINNRLERAA 319
           + +P  GLG AIN+RL RAA
Sbjct: 294 AEVPEVGLGRAINDRLRRAA 313


>gi|91206173|ref|YP_538528.1| putative translation factor protein [Rickettsia bellii RML369-C]
 gi|91069717|gb|ABE05439.1| Putative translation factor protein [Rickettsia bellii RML369-C]
          Length = 312

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HVS I   K
Sbjct: 2   IKQAVQFITSGKVVVFPTETVYGIGADATNQEACLKIFQFKNRPAVNPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + ++  +A+ FW GPL++V+ L    ++    TA LKT   R+P      +LI+ 
Sbjct: 62  EIGDFNYIAEKIAEKFWSGPLSIVVPLKENANVATAVTAGLKTIAIRIPSHPLALELIKQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGI-SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS T + H+       +EI ++ D    SK GLESTIV+   +  
Sbjct: 122 SGKPIAAPSANPSNYISPTRLDHVTRHFKENEEIFILTDKDYQSKYGLESTIVDTTADIP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + +++       +  ++PGML+ HY+P   +RL A ++N +E 
Sbjct: 182 T-ILREGFITAEVLETVLDIKINKASKNINI-KAPGMLEKHYSPTVSIRLNATNLNDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + FG+  +K       SLNLS  G L EAA NL+ Y+++ DD  A+     IA + IP 
Sbjct: 240 GLNFGDSNLK----GEYSLNLSSKGDLTEAAANLYAYLRLLDDYAAAHNIEHIAVAPIPT 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 INIGAAINDRLKRAA 310


>gi|326402400|ref|YP_004282481.1| hypothetical protein ACMV_02520 [Acidiphilium multivorum AIU301]
 gi|325049261|dbj|BAJ79599.1| hypothetical protein ACMV_02520 [Acidiphilium multivorum AIU301]
          Length = 322

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/312 (41%), Positives = 176/312 (56%), Gaps = 11/312 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  +A  TETVYGL  D+ N +A+  +YE K RP  NPLI H  D     +HA+ 
Sbjct: 17  ELLRAGELVAFATETVYGLGADATNASAVAAIYEAKGRPRFNPLISHFPDADAAFRHAAA 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
           D  +   A+ FWPGPLTLVL     +DI  L+TA L +   RVP  G  + L+   G P+
Sbjct: 77  DARAREAAQAFWPGPLTLVLPRRDESDIAALATAGLSSVAVRVPGHGIARALLAATGRPV 136

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG++S T   H++ + +   I  I++ G  ++GLES IV++     V +LRPG
Sbjct: 137 AAPSANRSGRLSPTRPAHVI-AGLEGRIAAILESGACEVGLESAIVDLTGATPV-LLRPG 194

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  E L+ A+   +    +  +  ++PGML SHYAP   +RL A      EA + FG  
Sbjct: 195 GISREALE-AVLGPVSIASEMGAAVKAPGMLASHYAPVLPMRLGATAPEDGEAWLGFG-- 251

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS----IAFSSIPNHGLGIAI 311
            I+      +S NLS  G L EAA  LF+ +   D +   +    IA + +P  GLG AI
Sbjct: 252 -IEPPTLPPVSRNLSPAGDLVEAAARLFDSLHELDAAAGLARLRRIAVARVPERGLGAAI 310

Query: 312 NNRLERAAAPRN 323
           N+RL RAAAPR+
Sbjct: 311 NDRLARAAAPRS 322


>gi|157826525|ref|YP_001495589.1| putative translation factor protein [Rickettsia bellii OSU 85-389]
 gi|157801829|gb|ABV78552.1| Putative translation factor protein [Rickettsia bellii OSU 85-389]
          Length = 312

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HVS I   K
Sbjct: 2   IKQAVQFITSGKVVVFPTETVYGIGADATNQEACLKIFQFKNRPAVNPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + ++  +A+ FW GPL++V+ L    ++    TA LKT   R+P      +LI+ 
Sbjct: 62  EIGEFNYIAEKIAEKFWSGPLSIVVPLKENANVATAVTAGLKTIAIRIPSHPLALELIKQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGI-SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS T + H+       +EI ++ D    SK GLESTIV+   +  
Sbjct: 122 SGKPIAAPSANPSNYISPTRLDHVTRHFKENEEIFILTDKDYQSKYGLESTIVDTTADIP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + +++       +  ++PGML+ HY+P   +RL A ++N +E 
Sbjct: 182 T-ILREGFITAEVLETVLDIKINKASKNINI-KAPGMLEKHYSPTVSIRLNATNLNDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + FG+  +K       SLNLS  G L EAA NL+ Y+++ DD  A+     IA + IP 
Sbjct: 240 GLNFGDSNLK----GEYSLNLSSKGDLTEAAANLYAYLRLLDDYAAAHNIEHIAVAPIPT 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 INIGAAINDRLKRAA 310


>gi|163795817|ref|ZP_02189781.1| Putative translation factor [alpha proteobacterium BAL199]
 gi|159178850|gb|EDP63386.1| Putative translation factor [alpha proteobacterium BAL199]
          Length = 320

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/318 (38%), Positives = 174/318 (54%), Gaps = 11/318 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D +A  +A   L +G  +A PTETVYGL  D+ +  A+  ++  K RP  NPLI HV 
Sbjct: 12  VDDPDARAEAAGLLRSGALVAFPTETVYGLGADATDEDAVAGIFAAKDRPRFNPLISHVP 71

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
                         +  LA   WPGPLT+VL       I  L++A L+T   RVP     
Sbjct: 72  TADAAFALGQATEAAKRLAATHWPGPLTMVLQRRPGCPIAWLTSAGLETVALRVPGSAAA 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L+   G P+A PSANRSG++S T   H+ +  +   + LI+DGG   +GLEST+V++ 
Sbjct: 132 RSLLAEVGRPVAAPSANRSGRVSPTTAAHV-AEELGGRVALILDGGPCPVGLESTVVDLS 190

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            ++  R+LRPG +  E ++ A+   ++  V E     +PGML SHYAP++ VRL A    
Sbjct: 191 GDRP-RLLRPGAVTREQIE-ALLGPIDLAV-EGDAITAPGMLASHYAPKAPVRLNATDRR 247

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
           P EA + FG         A    +LS +G L  AA  LF  ++  D  G ++IA + +P 
Sbjct: 248 PGEAFLDFGAT------VAGADADLSPSGDLLAAAAKLFAALRALDRPGIAAIAVARVPV 301

Query: 305 HGLGIAINNRLERAAAPR 322
            GLG AIN+RL RAAAPR
Sbjct: 302 GGLGAAINDRLRRAAAPR 319


>gi|296116654|ref|ZP_06835264.1| hypothetical protein GXY_12643 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976866|gb|EFG83634.1| hypothetical protein GXY_12643 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 335

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 131/329 (39%), Positives = 178/329 (54%), Gaps = 25/329 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D   + +A + L  G  +A  TETVYGL  D+ N  A+ R++  K+RP  NPLI H  
Sbjct: 18  VADRAGITRAADILRTGGLVAFGTETVYGLGADATNAVAVARIFAAKERPTFNPLISHFP 77

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
           D +    HA  D  +  LA  FWPGPLT+VL   +   I  L+ A L +   RVP   T 
Sbjct: 78  DAAAAFVHAMADGRAHRLAHRFWPGPLTMVLPRAAGCAISDLAGAGLPSVAVRVPDSDTA 137

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L+   G P+A PSAN SG +S +  +H+L   +  +I  I+D G   +G+ESTIV++ 
Sbjct: 138 RALLAAAGVPVAAPSANPSGGVSPSRAEHVL-DGLEGKIDAILDSGPCAVGVESTIVDLT 196

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETS-------TPQSPGMLKSHYAPRSQVR 237
               V +LRPGG+ IE L+       E C D T+        P +PG L SHYAP   VR
Sbjct: 197 GTHPV-LLRPGGITIEALR-------EVCPDITTPHDTSDARPVAPGRLSSHYAPTLPVR 248

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DSG 293
           L A  V P EAL+ FG      +  + ++ NLS+  KL+EAA  LF  ++  D      G
Sbjct: 249 LDAQTVAPDEALLAFG----AELPGSPLTWNLSQGEKLEEAAARLFAGLRFLDMEGRRRG 304

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             +IA   +P HGLG AI +RL RAA PR
Sbjct: 305 LRAIAVQPVPTHGLGAAIGDRLSRAACPR 333


>gi|329889534|ref|ZP_08267877.1| SUA5 domain protein [Brevundimonas diminuta ATCC 11568]
 gi|328844835|gb|EGF94399.1| SUA5 domain protein [Brevundimonas diminuta ATCC 11568]
          Length = 312

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 168/307 (54%), Gaps = 13/307 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G  + +PTETVYGLA D+ NP A+ R++E K RP  NPLI HV++    +  A
Sbjct: 15  AAEALKTGRLVILPTETVYGLAADASNPQAVARIFEAKGRPRFNPLIAHVANAVDAEAIA 74

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
             D  +  LA+ FWPGPLT+V  +     +  L+ A L +   RVP     + +I  +G 
Sbjct: 75  VFDAKARALAEAFWPGPLTIVAPVRDRERVCDLARAGLDSVAVRVPGHPRARAVIGAFGG 134

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+  PSANRSG+ S T     L  +  + +   +DGG   +G+EST+V+V  + +V +LR
Sbjct: 135 PVVAPSANRSGRPSPTTFGDALEET-GQAVGAAVDGGPCAVGVESTVVSV-LDGQVALLR 192

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           PG +  E ++ A     E         +SPG L  HYAP + VR+ A      E L+ FG
Sbjct: 193 PGSVTREEIEAAAGPLAEGGQGH----RSPGRLALHYAPDAPVRIEADGARDGEILLGFG 248

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
                 + +   S  LS +G L+EAA NLF  ++ AD S  S IA S IP  GLG AIN+
Sbjct: 249 ----AGVGDPRWS--LSPSGDLREAAANLFRLLREADRSKPSGIAVSPIPAKGLGEAIND 302

Query: 314 RLERAAA 320
           RL RAA 
Sbjct: 303 RLRRAAG 309


>gi|114328864|ref|YP_746021.1| sua5/YciO/YrdC/YwlC family protein [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317038|gb|ABI63098.1| sua5/YciO/YrdC/YwlC family protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 341

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/321 (37%), Positives = 169/321 (52%), Gaps = 18/321 (5%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  +A PTETV+GL  D+    A+ R++  K RP  NPLICH+ D      H 
Sbjct: 18  AGRLLRQGALVAFPTETVWGLGADATCADAVARIFAAKDRPRFNPLICHLPDAESAFTHG 77

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
             D  +  LA  FWPGPLT+VL     + +  L++A  +T   RVP     ++++   G 
Sbjct: 78  IADDRARALAAAFWPGPLTMVLRRNPDSPVSLLASAGQETLALRVPALDLARRMLVAAGC 137

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSANRSG++S T+  H++   +   I  ++DG    +G+EST++++     + +LR
Sbjct: 138 PVAAPSANRSGRVSPTSRDHVM-EGLAGRIDAVLDGPDCMVGVESTVIDLSGPSAI-LLR 195

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQ-------SPGMLKSHYAPRSQVRLRAIHVNPR 246
           PGG+  E L+  I         E            SPGM++SHYAP   VRL A+ V   
Sbjct: 196 PGGVSREALRDVIGDVTVLSAPEGGADGSREQVLLSPGMMRSHYAPSLTVRLDAVSVAAD 255

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSI 302
           EAL+ FG      +  A +  NLS  G + EAA  LF+ ++  D  G       IA   +
Sbjct: 256 EALLAFG----PPLPGAGLVWNLSAAGDVIEAATRLFSGLRTLDSKGRQRGLRGIACMRV 311

Query: 303 PNHGLGIAINNRLERAAAPRN 323
           P  GLG AIN+RL RAAAPR 
Sbjct: 312 PMQGLGEAINDRLARAAAPRE 332


>gi|15604678|ref|NP_221196.1| hypothetical protein RP848 [Rickettsia prowazekii str. Madrid E]
 gi|3861373|emb|CAA15272.1| unknown [Rickettsia prowazekii]
 gi|292572509|gb|ADE30424.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein
           [Rickettsia prowazekii Rp22]
          Length = 313

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/315 (38%), Positives = 174/315 (55%), Gaps = 12/315 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HV+ I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVTSIVQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
                + L+  +A  FWPGPL++V+ L    +I P  TA L T   R+P       LI  
Sbjct: 62  AIGEFNKLAEKIASKFWPGPLSIVVPLKDNVNIAPSVTAGLNTIALRIPSYPIALALIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTIVNVQCEKK 188
              P+A PSAN S  IS TN +H+           I+   I +   GLESTI++      
Sbjct: 122 SVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILAPEIYQCEYGLESTIIDTTTVIP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + V++    +  S  ++PGMLK HY+P   VRL AI++N +E 
Sbjct: 182 T-ILREGFITSEILEELLGVKILKASEINSIVKAPGMLKKHYSPNVHVRLNAINLNDKEI 240

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS----IAFSSIPN 304
            + FGN    N+     +LNLS  G + EAA NL++Y++I DD   S+    IA + +P 
Sbjct: 241 GLNFGN---SNLTGK-FALNLSTEGNIIEAAANLYSYLRILDDYAVSNDINCIAVAPVPL 296

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 297 TNIGAAINDRLKRAA 311


>gi|255034046|ref|YP_003084667.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
           18053]
 gi|254946802|gb|ACT91502.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
           18053]
          Length = 349

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/327 (40%), Positives = 183/327 (55%), Gaps = 16/327 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            I+++T S+ L  A EFL  G  +AIPTETVYGLA ++ N  A+  ++E+K RPA +PLI
Sbjct: 31  NILAVTGSD-LSVAKEFLIKGELVAIPTETVYGLAGNALNEKAVLSIFEVKNRPAFDPLI 89

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119
            H   +  V  + S  P     LA+  WPGPLTL   LL   DI P L T+ L T   R+
Sbjct: 90  IHTDSLKKVAIYVSDVPEKARILAEKLWPGPLTL---LLPKKDIVPDLVTSGLDTVAVRI 146

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T++L+     PLA PSAN  G IS T   H+    +   IP I+DGG  ++G+ES
Sbjct: 147 PDHALTRELLAQLSFPLAAPSANPFGYISPTKPAHV-EQQLGDRIPYILDGGECEVGIES 205

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV  + ++ + + R GGL+I  ++  I   +      TS P++PGMLKSHYAPR  + L
Sbjct: 206 TIVGFENDETI-VYRLGGLDINEIESLIG-PVALMPHSTSDPKAPGMLKSHYAPRKPLHL 263

Query: 239 -RAIHVNPREA---LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
            R   + P +A    + F    +  ++     L LS    LKEAA NLF Y++  D    
Sbjct: 264 YRRDAITPGDAGTGYLLFDRY-LDGVDRRYQRL-LSPGHDLKEAAHNLFAYLRELDGLPV 321

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321
           S I    +P  GLG+AIN+RL+RA+ P
Sbjct: 322 SEIKAELVPASGLGLAINDRLQRASVP 348


>gi|167648441|ref|YP_001686104.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter sp. K31]
 gi|167350871|gb|ABZ73606.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter sp. K31]
          Length = 296

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/302 (40%), Positives = 170/302 (56%), Gaps = 11/302 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           + AG  + +PTETVYGL  D+ NP A+  ++E K RP  NPLI HV+ +    + A +D 
Sbjct: 1   MAAGGLVLLPTETVYGLGADAANPAAVAAIFEAKGRPRFNPLIAHVASLEDAARIAVLDE 60

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137
            +L LA  FWPGPLTLV  +     +  L+ A L T   RVP    ++ ++  +G P+  
Sbjct: 61  RALALAAAFWPGPLTLVAPIRDAAAVCDLARAGLDTVAIRVPGHPLSRAVLAAFGGPVVA 120

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG+ S T  +   + +  K   + +DGG  ++GLEST+V V  +   R+LRPG +
Sbjct: 121 PSANRSGRPSPTTFEDAFAETGDKAA-VALDGGPCQVGLESTVVAV-LDGPPRLLRPGAV 178

Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257
               L+  +    E    E    +SPG L  HYAP + VR+ A      EA + FG  P+
Sbjct: 179 TRAQLEAVVGPLAEA---ENDARRSPGRLALHYAPDAPVRIDAARPEAGEAFLAFGPWPM 235

Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                     NLS TG L EAA NLF++++ AD    S+IA ++IP+ GLG AIN+RL R
Sbjct: 236 -----GAGVFNLSPTGDLAEAAANLFSFLRAADRLKPSAIAVAAIPHEGLGEAINDRLRR 290

Query: 318 AA 319
           AA
Sbjct: 291 AA 292


>gi|284036313|ref|YP_003386243.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
 gi|283815606|gb|ADB37444.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
          Length = 324

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/318 (38%), Positives = 175/318 (55%), Gaps = 21/318 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA EFL++G  + IPTETVYGLA ++ +  AI R++++K RP+ +PLI H   I  V + 
Sbjct: 10  KAKEFLESGNVVGIPTETVYGLAGNALDTNAILRIFQVKNRPSFDPLIVHTDSIDKVSQF 69

Query: 74  ASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
            +  P  +  LA+ FWPGPLTL+L   S   I  L T+ L +   R+P    T  L+ + 
Sbjct: 70  ITDIPEPARKLAEAFWPGPLTLLLPKQSL--IPDLVTSGLPSVAVRIPNHPLTLDLLRSL 127

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             PLA PSAN  G IS T  +H+ +  +  ++P I+DGG + +G+ESTIV  +      +
Sbjct: 128 DFPLAAPSANPFGYISPTTAQHV-ADQLGDQVPYILDGGPAGVGIESTIVGFENNLPT-V 185

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA--- 248
            R GG+ +E ++  I   +      TS PQ+PGML SHYAPR  + L +   +P+     
Sbjct: 186 FRLGGMALEQIEAVIG-SVSVRTHSTSNPQAPGMLSSHYAPRKPLMLLSPGESPQPGERI 244

Query: 249 ---LIR--FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
                R  FG +PI N         LS TG L EAA NLF  ++  D      I    +P
Sbjct: 245 GALAFREPFGGIPISN------QRVLSPTGDLNEAAKNLFACLRELDTLSVDLIYAEPLP 298

Query: 304 NHGLGIAINNRLERAAAP 321
           N GLG A+N+RL RA+ P
Sbjct: 299 NTGLGSAMNDRLRRASVP 316


>gi|51474016|ref|YP_067773.1| hypothetical protein RT0837 [Rickettsia typhi str. Wilmington]
 gi|51460328|gb|AAU04291.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 313

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 172/315 (54%), Gaps = 12/315 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RP +NPLI HV+ I   K
Sbjct: 2   LNKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPVINPLIVHVASIVQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
                + L+  +A+ FWPGPL++V+ L    +I P  TA L T   R+P       LI  
Sbjct: 62  AIGEFNKLAEKIARKFWPGPLSIVVPLKDNVNIAPSVTAGLNTIALRIPSYSIALALIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTIVNVQCEKK 188
              P+A PSAN S  IS TN +H+           I+   I +   GLESTI++      
Sbjct: 122 SVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILSPEIYQCEYGLESTIIDTTTVIP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + V++    +  S  ++PGML+ HY+P   +RL AI++N +E 
Sbjct: 182 T-ILREGFITSEILEELLGVKILKASEINSIVKAPGMLQKHYSPNVHIRLNAINLNDKEI 240

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA----SSIAFSSIPN 304
            + FGN  +        +LNLS  G   EAA NL++Y++I DD  A    + IA + +P 
Sbjct: 241 GLNFGNSNLT----GKFALNLSTEGNFIEAAANLYSYLRILDDYAALNDINCIAVAPVPL 296

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 297 TNIGAAINDRLKRAA 311


>gi|332185534|ref|ZP_08387282.1| SUA5 domain protein [Sphingomonas sp. S17]
 gi|332014512|gb|EGI56569.1| SUA5 domain protein [Sphingomonas sp. S17]
          Length = 311

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/296 (41%), Positives = 163/296 (55%), Gaps = 17/296 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PTETVYGLA D+  P A+ R+Y  K RP+ NPLI HV D++  ++ A  D  +L LA
Sbjct: 30  VAVPTETVYGLAADATEPQAVARIYAAKGRPSFNPLIVHVPDLAAARELAEFDADALALA 89

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLV  L +   I  L TA L T   RVP     + L+   G PLA PSAN S
Sbjct: 90  EAFWPGPLTLVRPLRAGAGIASLVTAGLDTVAIRVPRHRAMQALLAASGRPLAAPSANAS 149

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G IS T   H+  +S+   +P I+D G ++ GLESTIV  +      ILRPG +    L 
Sbjct: 150 GGISPTRAAHV-RASLGPAVP-ILDDGATEAGLESTIVAGRT-----ILRPGPVTGTMLA 202

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
           + +   +E   +  +   +PG L SHYAPR  +RL        E LI FG V  ++    
Sbjct: 203 KVLG-SVEQGPEAPAIVTAPGQLASHYAPRKPLRLNVTEAAADEWLIGFGAVEGQD---- 257

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                LS  G   EAA  LF+ +  AD S    +A + IP  G+G AIN+RL RAA
Sbjct: 258 ----TLSAIGDPVEAAARLFDALHRADASDPPRLAVAPIPVDGIGEAINDRLRRAA 309


>gi|254445927|ref|ZP_05059403.1| Sua5/YciO/YrdC/YwlC family protein, putative [Verrucomicrobiae
           bacterium DG1235]
 gi|198260235|gb|EDY84543.1| Sua5/YciO/YrdC/YwlC family protein, putative [Verrucomicrobiae
           bacterium DG1235]
          Length = 327

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/334 (37%), Positives = 181/334 (54%), Gaps = 29/334 (8%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T+ N LR+  +FL  G  + +PTETVYGLA ++ +P A  +++E+K+RPA +PLIC
Sbjct: 4   ILQPTEEN-LRELRKFLLFGGLVGVPTETVYGLAANAFDPEACAKIFEVKQRPANDPLIC 62

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           HVS    ++     +PL+L LAK FWPGPLT VL     + I  + TA L +   R    
Sbjct: 63  HVSGADALEDICHANPLALRLAKRFWPGPLTFVLP--KKSKIPNIVTAGLDSVAVRCSAH 120

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             F  +L+E    P+A PSAN    IS T  +H+  + +  +I  I+DGG    G+ESTI
Sbjct: 121 PDF-HRLVEQCDFPIAAPSANPFAYISPTTAQHV-QAGLGSKITFILDGGSCSFGVESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIET----LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ++++ E   RILR G L  E     L R+I        DE+    +PG L  HY+PR+ +
Sbjct: 179 LDLRDETNPRILRYGALPAEDIEVELGRSIEKPTFITADESVQHLAPGALPKHYSPRTPL 238

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLN-----------LSKTGKLKEAAFNLFNY 285
            LR    N   A        +KN + A++              LS+ GKL E A NL+  
Sbjct: 239 ELRGGISNAELA-------SLKNDQAALLLARPEGSFPGNVHWLSENGKLSEIASNLYAK 291

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++  D+SG ++I     P  GLG+AIN+RL RA+
Sbjct: 292 LREIDESGYATIFAEEAPELGLGLAINDRLRRAS 325


>gi|313677607|ref|YP_004055603.1| translation factor sua5 [Marivirga tractuosa DSM 4126]
 gi|312944305|gb|ADR23495.1| translation factor SUA5 [Marivirga tractuosa DSM 4126]
          Length = 317

 Score =  186 bits (472), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 181/316 (57%), Gaps = 17/316 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E LDA   I +PTETVYGLA +      + +++E+K RP  +PLI H   ++ + 
Sbjct: 8   INQAKELLDADQLIGLPTETVYGLAGNGLKANVVSKIFEVKNRPHFDPLILHSYSLNAIS 67

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129
           ++    P +   LAK FWPGPLT++L+      I  L+ + L    FR+P       L++
Sbjct: 68  EYVKEIPETAKILAKAFWPGPLTILLE--RNEKIPDLTCSGLNRVAFRIPKHPNALSLLK 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
              +PLA PSAN  G IS TN +H+    +  +IP I++G IS++G+ESTIV  +  + V
Sbjct: 126 ILDYPLAAPSANPFGYISPTNSQHV-QQQLGDKIPFILEGKISEVGIESTIVGFENGETV 184

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI------HV 243
            I R GGL+++ ++  I  ++      +S P +PGMLKSHYAP   + L  I      + 
Sbjct: 185 -IYRLGGLDVDQIESLIG-KVRILPHSSSKPDAPGMLKSHYAPSKNIILGNIEELIEQNS 242

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
           N +  ++ F     K++E    SL LSK+  + EAA NLF++++  D+S    I    +P
Sbjct: 243 NLKLGVLSFSKY-YKDVET---SLMLSKSKDMHEAAKNLFSHLRKLDESNVDLIITEKVP 298

Query: 304 NHGLGIAINNRLERAA 319
           + GLG AIN+RL+RAA
Sbjct: 299 SEGLGKAINDRLQRAA 314


>gi|254709554|ref|ZP_05171365.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis B2/94]
 gi|261317082|ref|ZP_05956279.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
 gi|261296305|gb|EEX99801.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
          Length = 242

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 141/235 (60%), Gaps = 7/235 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L    D    IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   + +  +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAV-AGDLGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
             + +V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL
Sbjct: 187 DGD-QVHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRL 239


>gi|312129757|ref|YP_003997097.1| translation factor sua5 [Leadbetterella byssophila DSM 17132]
 gi|311906303|gb|ADQ16744.1| translation factor SUA5 [Leadbetterella byssophila DSM 17132]
          Length = 314

 Score =  186 bits (471), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/314 (37%), Positives = 172/314 (54%), Gaps = 14/314 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KA   L+AG  +AIPTETVYGLA ++ NP A+ +++E K RP+ +PLI H+S  + + 
Sbjct: 8   IQKAKAILEAGGLVAIPTETVYGLAANALNPKAVAKIFEAKNRPSFDPLIIHISTFAELY 67

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC-GFTKKLI 128
           K+ S     L  +A  FWPGPLT+   LL   DI P + T+ L+    RVP    T  L+
Sbjct: 68  KYTSQSLGQLTEIANKFWPGPLTV---LLPKRDIIPDVVTSGLERVAVRVPQHELTLSLL 124

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            +   PLA PSAN  G +S T  +H+    +  ++  I+DGG  ++G+ESTI+ ++    
Sbjct: 125 SSIDFPLAAPSANPFGYVSPTTAQHVY-DQLAGKVDYILDGGPCQVGVESTIIGIEVADL 183

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--RAIHVNPR 246
           V + R GGL IE L+R    ++       S P +PGMLK HY+P  QV +       +  
Sbjct: 184 V-VYRKGGLAIEDLERNFEGKVRVNDFSASNPSAPGMLKKHYSPDKQVLVYKEGESYDKE 242

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
            A +RF + PI       +   LS++  L EAA  LF  ++  D     +I    +P  G
Sbjct: 243 TAFLRFSS-PISGYSYQFV---LSESADLAEAAARLFQGLRALDQMPVKTIVIEFVPEVG 298

Query: 307 LGIAINNRLERAAA 320
           LG AIN+RL R  A
Sbjct: 299 LGRAINDRLRRTIA 312


>gi|307718163|ref|YP_003873695.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM
           6192]
 gi|306531888|gb|ADN01422.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM
           6192]
          Length = 330

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 182/328 (55%), Gaps = 17/328 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++  TD  A+ +A   L  G  +A PTETVYGL  ++ +  A+ R++EIK+RP  +PLI
Sbjct: 5   RVLPATD-EAIEEAARLLREGEAVAFPTETVYGLGANALDAVAVARIFEIKERPLFDPLI 63

Query: 62  CHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+++  M+K+     P ++  L   FWPGPLTLVL       +  + TA L T   R+P
Sbjct: 64  VHIAEEGMLKEVVREVPSIARRLMARFWPGPLTLVLP--KGERVPGIVTAGLPTVGVRMP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LIE  G P+A PSANR G +S T   H+ +  +   + L++DGG  ++G+EST
Sbjct: 122 AHPVARRLIERAGVPIAAPSANRFGSLSPTRAGHV-AGQLGGRVALVLDGGACEVGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVR 237
           +V V+   +VR+LRPGG+ +E L+ A+          +     ++PGML  HYAP   V 
Sbjct: 181 VVRVEG-GRVRVLRPGGVAVEALEEAVGRGAVVVGGPEREGAQEAPGMLPWHYAPSVPVV 239

Query: 238 LRAIHVNP-----REA-LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           +      P     REA L+ +  VP +    A+    LS  G L+EAA  LF  +   ++
Sbjct: 240 VLEGGAMPGAEEAREAGLLAWREVPARPAFRAVEV--LSPRGDLQEAAARLFEGLHRLEE 297

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
           +G + I   ++P  GLG A+ +RL +AA
Sbjct: 298 AGVARIYAEAVPEVGLGRAVMDRLRKAA 325


>gi|145592582|ref|YP_001156879.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440]
 gi|145301919|gb|ABP52501.1| translation factor SUA5 [Salinispora tropica CNB-440]
          Length = 323

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 184/315 (58%), Gaps = 17/315 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L AG  +A+PTETVYGL  ++ +  A+ R++  K RP+ +PLI H+++ + ++K 
Sbjct: 15  EAAAVLRAGGLVALPTETVYGLGANALDAPAVARIFAAKARPSFDPLISHLAEAAELEKL 74

Query: 74  ASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
               P ++  LA+ FWPGPLTL++D  +   I P+ T+ L+T   RVP    T+ LI   
Sbjct: 75  VGTVPAAVAELAERFWPGPLTLIVDRPAV--IPPIVTSGLETMAVRVPDHAATRGLIAAA 132

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+ + ++ V +
Sbjct: 133 GVPVAAPSANRFGQLSPTRAEHVV-AGLGAAVDVVLDGGPTRCGIESTIVDARGDRPV-V 190

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP------ 245
           LR G L +E L+ A+   L      +  P +PG L +HYAPR+++RL A   +P      
Sbjct: 191 LRLGALPVELLQEAVGPVLVRA-GSSGQPVAPGTLAAHYAPRTRLRL-ATDTDPADGGVS 248

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           R+  + F   P  +     +   LS  G L EAA  LF+ +   D +G   I   S+P  
Sbjct: 249 RQGFLGFRGCPAGDWAAVEV---LSSKGDLTEAAARLFDALHRLDGAGVDEILVESVPEV 305

Query: 306 GLGIAINNRLERAAA 320
           G+G AIN+RL RAAA
Sbjct: 306 GVGRAINDRLRRAAA 320


>gi|296122108|ref|YP_003629886.1| Sua5/YciO/YrdC/YwlC family protein [Planctomyces limnophilus DSM
           3776]
 gi|296014448|gb|ADG67687.1| Sua5/YciO/YrdC/YwlC family protein [Planctomyces limnophilus DSM
           3776]
          Length = 322

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 179/327 (54%), Gaps = 17/327 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + ++D+    +A   L AG  +A+PTETVYGLA    NP  + +++  K RP  +PL
Sbjct: 1   MQTVVLSDAE---EAIRALKAGELVALPTETVYGLAGLGLNPEVLAKIFSAKDRPTFDPL 57

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    V + AS  P  +  L   FWPGPLTLVL       +  L+TA L T   R 
Sbjct: 58  ILHIARPGQVSQLASEVPHDARRLVDTFWPGPLTLVLP--KKPHVPDLATAGLGTVAVRC 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     +K+IE  G PLA PSAN  G++S T+ +H++   +   IP ++DGG  ++G+ES
Sbjct: 116 PKHPLMRKIIEKVGVPLAAPSANLFGRLSPTSAQHVV-EQLEGRIPYVLDGGACEVGVES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQ-SPGMLKSHYAPRSQ 235
           TI+    +  V +LRPGGL +E ++  I     L     ET+  Q +PGML  HYAP + 
Sbjct: 175 TIIGFMPD-GVYLLRPGGLPVEQVEHMIGPLKRLPAQSVETAASQAAPGMLMKHYAPATP 233

Query: 236 VRL--RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           + +  R   + P + ++ F   P  ++      + LS    L+EAA  LF  +   D SG
Sbjct: 234 LVMIDRFEELKPGDGVLTFCGRPQGHLGPV---MELSPRKNLQEAASLLFQALHQLDRSG 290

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              IA    P HGLG+AIN+RL RAAA
Sbjct: 291 VPRIAALRFPEHGLGMAINDRLSRAAA 317


>gi|315500026|ref|YP_004088829.1| sua5/ycio/yrdc/ywlc family protein [Asticcacaulis excentricus CB
           48]
 gi|315418038|gb|ADU14678.1| Sua5/YciO/YrdC/YwlC family protein [Asticcacaulis excentricus CB
           48]
          Length = 309

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/297 (39%), Positives = 165/297 (55%), Gaps = 8/297 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I +PTETVYGL   + +PTA+ +++E K RP  NPLI HV+ +   +     D  +  LA
Sbjct: 17  IHLPTETVYGLGARADDPTAVAKVFEAKGRPRFNPLIVHVASLEAAEAIGVFDDRARDLA 76

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLV+ +  T  +  L+ A L +   RVP     + ++E +   +  PSANRS
Sbjct: 77  QAFWPGPLTLVVPVRDTQKVCDLARAGLDSVAIRVPSHPLARAILEGFAGGVVAPSANRS 136

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+ S T     LS +    +   +DGG  ++GLES++V++  E  VR LRPG +   T  
Sbjct: 137 GRPSPTRFADALSET-GGFVGASVDGGDCQVGLESSVVSLLGE--VRYLRPGAV---TRA 190

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
              +V      D T   +SPG L  HYAP + V +   +       + FG V  K ++ A
Sbjct: 191 EVEAVVGPLADDATEGHRSPGRLSLHYAPDAPVNINVENPPADCVYLAFGPVD-KAVDFA 249

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            I LNLS  G+L EAA NLF Y++ AD    + I  + IP+ GLG AIN+RL+RAA 
Sbjct: 250 GIILNLSPMGRLSEAAANLFAYLREADAHKPARICVAPIPSDGLGEAINDRLKRAAG 306


>gi|296284822|ref|ZP_06862820.1| putative translation factor [Citromicrobium bathyomarinum JL354]
          Length = 323

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 14/321 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  + +  + L  G  +A+PTETVYGLA  + +  A+ R++  K RP+ NPLI HVSD+
Sbjct: 13  DSTGIARTAQILRDGGLVAVPTETVYGLAARADSEDAVSRIFAAKGRPSFNPLIVHVSDV 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              +   +++P +L LA  FWPGPLTLVL       +     A L T   R P     + 
Sbjct: 73  QQAEALVTMEPRALALAARFWPGPLTLVLPRHENAAVASSIHAGLPTLAVRCPAHPVMRA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +++    P+A PSAN S  +S T  +H+L +++   I  ++D G S+ GLESTIV ++ +
Sbjct: 133 VLDELAIPVAAPSANASETVSPTTAEHVL-ATLDGRIDSVLDAGASERGLESTIVALRAD 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LR G +  E L+  +  E      +    ++PG ++ HYAP   +RL A      
Sbjct: 192 GGWSLLREGPIGREVLEDMLGSE----ASDGRGIEAPGQMRRHYAPGKPLRLNARKAEAG 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E LI FG V           + LS TG + EAA  L+  + +   S    IA + +P   
Sbjct: 248 EFLIGFGAVEGD--------VTLSATGDVNEAATRLYGCLHLGAASDKPLIAVAPVPEDA 299

Query: 307 LGIAINNRLERAAAPRNQSQR 327
           +G AIN+RL RAAAP    QR
Sbjct: 300 VGRAINDRLRRAAAPPEGDQR 320


>gi|310644396|ref|YP_003949155.1| translation factor (sua5) [Paenibacillus polymyxa SC2]
 gi|309249347|gb|ADO58914.1| Putative translation factor (SUA5) [Paenibacillus polymyxa SC2]
          Length = 427

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 178/345 (51%), Gaps = 32/345 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           IT    +R+A   L AG  +A PTETVYGL  D+R+  A+  ++  K RP+ NPLI H+S
Sbjct: 83  ITAEKGIREAAVLLQAGETVAFPTETVYGLGADARSTKAVEAVFAAKGRPSDNPLIVHIS 142

Query: 66  DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D + +K   A ++  +  L   FWPGPLTLVL ++S   +    TA L T   R+P    
Sbjct: 143 DAAQLKGMVAEINDTARALMNTFWPGPLTLVLPVVSQA-LSSRVTAGLDTVGVRMPDHPI 201

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +LI   G PLA PSANRSG+ S T  +H+L   +   I  I+DGG + +GLEST+V V
Sbjct: 202 ALRLIAEAGCPLAAPSANRSGRPSPTLAQHVL-EDLKGRIGGILDGGPTGVGLESTVVQV 260

Query: 184 QCEKKVRILRPGGLEIETLKR-AISVELEYCVDETS-------TPQSPGMLKSHYAPRSQ 235
             E  V ILRPGG+  E L   A SV L+  +  T         P+SPGM  +HYAPR +
Sbjct: 261 GDEGTVTILRPGGVTAEQLATVARSVVLDPALAHTPGQDADSLAPRSPGMKYTHYAPRGR 320

Query: 236 VRL------------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277
           + +                   A     R A++ F +         + +L   K   L E
Sbjct: 321 LSVVQGPSSVEVTGWIRAALAEATARGERTAVLAFDDHAAGYAGERVYTLG--KLDALHE 378

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           AA  L++ ++  D+ G + I   + P  GLG A+ NRL +AA  R
Sbjct: 379 AAQRLYSVLRRCDEDGVTYILAEACPPKGLGDAVMNRLLKAAGHR 423


>gi|16127620|ref|NP_422184.1| Sua5/YciO/YrdC family protein [Caulobacter crescentus CB15]
 gi|221236437|ref|YP_002518874.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter crescentus NA1000]
 gi|13425098|gb|AAK25352.1| Sua5/YciO/YrdC family protein [Caulobacter crescentus CB15]
 gi|220965610|gb|ACL96966.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter crescentus NA1000]
          Length = 325

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/303 (39%), Positives = 171/303 (56%), Gaps = 11/303 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL  ++ +P A+  ++E K RP  NPLI HV+D+    + A  D 
Sbjct: 30  LRAGGLVILPTETVYGLGANAADPAAVAAIFEAKGRPRFNPLIAHVADLETAARIAVFDD 89

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +  LA+ FWPGPLT+V  +     +  L+ A L T   RVP    ++ ++  +G  +  
Sbjct: 90  RAHALAREFWPGPLTIVAPIRDPEAVCDLARAGLDTVAIRVPGHPLSRAVLAAFGGAVVA 149

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG+ S T     ++ +  K     +DGG   +GLEST+V+V  E +VR+LRPG +
Sbjct: 150 PSANRSGRPSPTTYDDAMAETGDKAA-AHLDGGPCAVGLESTVVSV-LEGEVRLLRPGAV 207

Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257
               L++ +   L    D+    +SPG L  HYAP + VR+ A      EA + FG  P 
Sbjct: 208 TRVQLQQIVG-RLAEAQDDAK--RSPGRLALHYAPDAPVRINAKTPEAGEAYLAFGPWP- 263

Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
              E+  +  NLS TG L EAA NLF +++ AD    S+IA + IP  GLG AIN+RL R
Sbjct: 264 ---ESPRV-FNLSPTGDLAEAAANLFAFLRAADRIRPSAIAVAPIPEEGLGEAINDRLRR 319

Query: 318 AAA 320
           AA 
Sbjct: 320 AAG 322


>gi|138896951|ref|YP_001127404.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268464|gb|ABO68659.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 345

 Score =  182 bits (462), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 177/325 (54%), Gaps = 18/325 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E+L  G  IA PTETVYGL  D+ N TA+ +++  K RP+ NPLI HV+ ++ V+
Sbjct: 21  IQEAAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASLAQVE 80

Query: 72  K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              AS+ P++  L + FWPGPLTLVL       +    TA L T   R+P       LIE
Sbjct: 81  SIAASIPPVAKTLMERFWPGPLTLVLPKRDGA-VSERVTAGLSTVAVRMPDHPLALALIE 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++  C  +V
Sbjct: 140 ASGLALAAPSANRSGRPSPTTAAHVL-ADLNGRIAGVIDGGPTGVGVESTVLD--CSGEV 196

Query: 190 -RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILRPGG+  E L   I    E   DE + P++PGM  +HYAP++ + + A   +  + 
Sbjct: 197 PTILRPGGVTKEALSEVIGRVEEAAGDEQTAPKAPGMKYTHYAPKAPLWIAAGPPSFLQR 256

Query: 249 LIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L+       K +      EN     A + L       L+  A  L++ ++  D++G + I
Sbjct: 257 LVDESRAEGKTVGVLTTEENKNRYVADVVLACGARRDLETVAQRLYDVLRQFDETGVNLI 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322
              + P  G+G AI NRL +AA  R
Sbjct: 317 YSEAFPEEGIGAAIMNRLRKAAGGR 341


>gi|159045624|ref|YP_001534418.1| Sua5/YciO/YrdC/YwlC family protein [Dinoroseobacter shibae DFL 12]
 gi|157913384|gb|ABV94817.1| Sua5/YciO/YrdC/YwlC family protein [Dinoroseobacter shibae DFL 12]
          Length = 325

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/291 (38%), Positives = 161/291 (55%), Gaps = 11/291 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+R+  A+  ++  K RP+ NPLI HV D++   +   + P  L LA
Sbjct: 30  VAFPTETVYGLGGDARSDRAVAGIFAAKGRPSFNPLIVHVPDLAAAGRLVDLPPAGLALA 89

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           + FWPG LTLV  + +   I PL TA L+T   RVP     + L+  +  P+A PSAN S
Sbjct: 90  EAFWPGALTLVAPMRAEAGISPLVTAGLETLAVRVPAHSAAQALLRGFDGPVAAPSANPS 149

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G +S T   H+L   +  +I  ++DGG   +GLESTIV++  E  + +LRPGG+  E L 
Sbjct: 150 GGVSPTTAAHVL-DGLDGKIAAVLDGGACPVGLESTIVSLAGETPM-LLRPGGVTAEALA 207

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
           + +   +       + P +PG L SHYAP + VRL A      E  + FG        + 
Sbjct: 208 QVLGAPIAEGAGSATQPTAPGQLASHYAPDAPVRLNATARQDGEVWLGFG-------PDC 260

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGLGIAINN 313
              ++LS++G+L EAA  LF  ++  D  +    IA + +P  GLG AIN+
Sbjct: 261 PGDMSLSESGELAEAAARLFAALRAMDALAEGRRIAVAPVPQTGLGAAIND 311


>gi|325109331|ref|YP_004270399.1| translation factor SUA5 [Planctomyces brasiliensis DSM 5305]
 gi|324969599|gb|ADY60377.1| translation factor SUA5 [Planctomyces brasiliensis DSM 5305]
          Length = 326

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 177/321 (55%), Gaps = 20/321 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L AG  +AIPTETVYGLA D+ NP A+  ++  K+RP  +PLI H+ + + + 
Sbjct: 12  IEQASRILHAGGLVAIPTETVYGLAADALNPEAVAGIFAAKQRPEFDPLIVHIYERAQLS 71

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
           +    + PL+  L   FWPGPLT +L+   +  +  L T+ L T   R+P   T ++L+ 
Sbjct: 72  QLCREISPLAAELMNAFWPGPLTFILE--KSASVPDLVTSGLSTVGVRMPEHETARELLR 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN  G+ S T   H++   +   I  ++DGG  ++G+ESTIV    E  +
Sbjct: 130 VSRLPLAAPSANLFGRTSPTTAAHVM-KQLDGRIDYLLDGGECRVGVESTIVRCH-EGVI 187

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIHVNP 245
           ++LRPGG  +E L++   V +E  +++  +P +PG L  HYAPR+++++    + + V  
Sbjct: 188 QLLRPGGTPVEALEKFAPV-VETRLEDNESPAAPGQLLEHYAPRTKLQIIDPQQPLDVPA 246

Query: 246 REALIRF------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
             AL+         + P    E   +   LS++G L  AA   F  +   DD G + I  
Sbjct: 247 GSALLTLQKAGFPDDFPFDQFE---VVETLSESGDLTVAAARFFAALHALDDRGLNRIFA 303

Query: 300 SSIPNHGLGIAINNRLERAAA 320
           +  PN  LG+A+N+RL RAAA
Sbjct: 304 TPFPNRELGLALNDRLRRAAA 324


>gi|196249769|ref|ZP_03148465.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16]
 gi|196210645|gb|EDY05408.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16]
          Length = 345

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 177/325 (54%), Gaps = 18/325 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E+L  G  IA PTETVYGL  D+ N TA+ +++  K RP+ NPLI HV+  + V+
Sbjct: 21  IQEAAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASRAQVE 80

Query: 72  K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              AS+ P++  L + FWPGPLTLVL       +    TA L T   R+P       LIE
Sbjct: 81  SIAASIPPVAKTLMERFWPGPLTLVLPKRDGA-VSERVTAGLSTVAVRMPDHPLALALIE 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++  C  +V
Sbjct: 140 ASGLALAAPSANRSGRPSPTTAAHVL-ADLNGRIAGVIDGGPTGVGVESTVLD--CSGEV 196

Query: 190 -RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILRPGG+  E L   I    E   DE + P++PGM  +HYAP++ + + A   +  + 
Sbjct: 197 PTILRPGGVTKEALSEVIGRVEEAAGDEQTAPKAPGMKYTHYAPKAPLWIAAGPPSFLQR 256

Query: 249 LIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L+       K +      EN     A + L      +L+  A  L++ ++  D++G + I
Sbjct: 257 LVDESRAEGKTVGVLTTEENKNRYVADVVLACGARRELETVAQRLYDVLRQFDETGVNLI 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322
              + P  G+G AI NRL +AA  R
Sbjct: 317 YSEAFPEEGIGAAIMNRLRKAAGGR 341


>gi|296111567|ref|YP_003621949.1| SUA5 family translation factor (putative) [Leuconostoc kimchii
           IMSNU 11154]
 gi|295833099|gb|ADG40980.1| SUA5 family translation factor (putative) [Leuconostoc kimchii
           IMSNU 11154]
          Length = 337

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 177/329 (53%), Gaps = 20/329 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD  AL KA   L AG  +A PTETVYGL  D+ N  A+++++  K RPA NPLI  V+D
Sbjct: 8   TDQQALAKASALLKAGEVVAFPTETVYGLGADATNDLAVKKVFTAKGRPADNPLIMTVAD 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +S ++ + ++   +  L   FWPG LT++L ++ T  +  L T  L+T  FR+P    T+
Sbjct: 68  VSQLEAYVTISEAAQKLMTQFWPGSLTIILPII-TGQVSMLVTGGLQTVAFRLPANDVTR 126

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G PL  PSAN SG+ S T  +H+      K I  I+D G + +G+EST+V++  
Sbjct: 127 ELIRMTGVPLVGPSANLSGKPSPTTAQHVWHDMQGK-ISGIVDDGPTMVGVESTVVDMSA 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV---- 236
                ILRPG +    L+ A+ V +      TS     TP++PGM   HYAP  +V    
Sbjct: 186 AVPT-ILRPGAVTQNQLQEALGVAVIDATSTTSVASDVTPKAPGMKYRHYAPDKKVVMFD 244

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIADDS 292
           RL A+ +  +  L +   V  ++   A + L LS+T  L E    A   LF  ++  DD 
Sbjct: 245 RLDALDL--KLTLQKNDVVMAQDATIAGMQLPLSQTWSLGETLENATEQLFAGLRFYDDD 302

Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320
              +I +   +P  G+G A NNRL +AA 
Sbjct: 303 DEVAIIYVEKMPPVGIGKAFNNRLAKAAG 331


>gi|110638807|ref|YP_679016.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406]
 gi|110281488|gb|ABG59674.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406]
          Length = 321

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/318 (38%), Positives = 175/318 (55%), Gaps = 19/318 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L+    +AIPTETVYGLA ++ +  A+  ++ +KKRP+ +PLI H   I  + 
Sbjct: 11  ITQAKRLLEENHVVAIPTETVYGLAGNALDIKAVATIFSVKKRPSFDPLIVHTHSIEALG 70

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLI 128
           +  +  P     LAK FWPGPLTL   LL   +I P L T+ L     R+P    T  L+
Sbjct: 71  EFVADIPEQAQLLAKAFWPGPLTL---LLEKKEIIPDLVTSGLNRVAVRIPNHPLTLALL 127

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           ++   PLA PSAN  G IS T  +H+ +  +  ++  I+DGG S IG+ESTI+  +   K
Sbjct: 128 QSLSFPLAAPSANPFGYISPTTAQHV-TDQLGDQVAYILDGGASNIGVESTIIGWE-NGK 185

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR------LRAIH 242
             ++R GGL IE ++ AI   +      +S P +PGMLKSHYAPR  +R      L   +
Sbjct: 186 ATVMRVGGLSIEAIE-AIIGPVHVQAVSSSNPAAPGMLKSHYAPRIPMRAGNIETLLQTY 244

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
              + A++ F        +N I    LS  G + EAA +LF  M++ D S A  I    +
Sbjct: 245 AGKKIAVLSFQQAYPAAYKNYI----LSPEGNVTEAAQHLFAAMRVLDTSEADIILTEYV 300

Query: 303 PNHGLGIAINNRLERAAA 320
           P  GLG+AIN+RL+RA A
Sbjct: 301 PAVGLGLAINDRLKRACA 318


>gi|189218176|ref|YP_001938818.1| translation factor SUA5 [Methylacidiphilum infernorum V4]
 gi|189185034|gb|ACD82219.1| Putative translation factor SUA5 [Methylacidiphilum infernorum V4]
          Length = 324

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/326 (37%), Positives = 171/326 (52%), Gaps = 30/326 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+ KA + L+ G  +AIPTETVYGLA D  NP A+ R++E+KKRP ++P+I H S +  
Sbjct: 12  KAIEKAVDLLNKGEVVAIPTETVYGLAADGLNPEAVARIFELKKRPKIDPVIVHCSSLKE 71

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +    P     L + FWPGPLTLVL       I  + TA L  A FRVP    T +L
Sbjct: 72  VGFYVCDLPDEARILGESFWPGPLTLVLK--KKESIPDIVTAGLPFAGFRVPKHPLTLEL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+ +G PLA PSAN+ G+IS T  + +      + IP I+DGG  ++G+EST+V+   + 
Sbjct: 130 IQKFGRPLAAPSANKFGKISPTTAQAVY-EEFDQIIPFILDGGPCQVGIESTVVSF-AQI 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LR G +  E ++R I   +      T    +PG    HYAP +          P E
Sbjct: 188 PPLLLRFGAISKEEIERKIG-PVTIPPPSTGWNLAPGRFPRHYAPST----------PLE 236

Query: 248 ALIRFGNVPIKNIENAIISL-------------NLSKTGKLKEAAFNLFNYMKIADDSGA 294
            +    ++P+   +N+ +               NLS    L EAA NLF  ++  D SG 
Sbjct: 237 TVFTLTDLPLYKRKNSALLFWGEEDTQGFKTFRNLSPRKSLTEAAANLFQMLRDLDKSGV 296

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I    +P  GLGIAIN+RL++AA 
Sbjct: 297 EKIYALLLPEKGLGIAINDRLKKAAG 322


>gi|257416746|ref|ZP_05593740.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis AR01/DG]
 gi|257158574|gb|EEU88534.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis ARO1/DG]
          Length = 340

 Score =  179 bits (453), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N TA++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNETAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  EI  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGEIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|14590350|ref|NP_142416.1| hypothetical protein PH0435 [Pyrococcus horikoshii OT3]
 gi|3256838|dbj|BAA29521.1| 340aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 340

 Score =  178 bits (452), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 178/338 (52%), Gaps = 26/338 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           + + S  D   LR A + +  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPL
Sbjct: 5   INMRSGVDEVKLRIAAKLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPADNPL 64

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118
           I H++  S V + A   P     L + FWPGPLT+V   L   D+ P ++T  L T   R
Sbjct: 65  ILHIAKFSQVYELAREVPEEAKVLVERFWPGPLTIV---LPRKDVVPDVTTGGLDTVAIR 121

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      KLIE  G P+A PSAN SG+ S T+ +H+ +     +I  IIDGG ++IG+E
Sbjct: 122 MPANEIALKLIELSGKPIAAPSANISGKPSPTSAEHV-ADDFYGKIECIIDGGETRIGVE 180

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRS 234
           ST++++     V +LRPGGL +E +++ I  V +   V   +  TP+SPGM   HYAP +
Sbjct: 181 STVIDLTEHPPV-LLRPGGLPLEEIEKVIGKVRIHPAVFGKKVDTPKSPGMKYKHYAPNA 239

Query: 235 QVRLRAIHVNPREALI------------RFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
           +V    +   PRE +             R   V +   E+            ++E A NL
Sbjct: 240 EV---IVVEGPREKVKGKITELVKELKERGKKVGVIGSESYNADEFFFLGSSVEEVAKNL 296

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D +G   +    +   GLG+A+ NRL +A+ 
Sbjct: 297 FKALRYMDKAGVDVVIAEGVEERGLGLAVMNRLRKASG 334


>gi|254381244|ref|ZP_04996609.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1]
 gi|194340154|gb|EDX21120.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1]
          Length = 335

 Score =  178 bits (452), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 176/339 (51%), Gaps = 36/339 (10%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M    ++ + +A E L AG  +A+PTETVYGL  ++ +P A+ R++++K RP  +PLI H
Sbjct: 10  MVTATTSDIERAAEVLRAGGLVALPTETVYGLGANAEDPAAVARIFQVKGRPPSHPLIVH 69

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           ++    +       P +   LA+ FWPGPLTLVL       +   +T  L+T   RVP  
Sbjct: 70  IAAAEHLDDWVETVPETARLLAEHFWPGPLTLVLRRGPRVPLE--ATGGLETVAVRVPDH 127

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L+  +G  +  PSANR G +S T   H+  + +   + L++DGG  ++G+ESTIV
Sbjct: 128 PVALALLSAFGGGVTAPSANRFGSVSPTTADHV-RTELGGAVDLVLDGGSCEVGVESTIV 186

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +V  E    ILRPGG+  E L+  +S  +   V  TS  + PG   SHYAPR++V L   
Sbjct: 187 DVTGEVP-SILRPGGVTREDLEAVLSRSM--AVPSTSHVRVPGQHPSHYAPRARVVL--- 240

Query: 242 HVNPREALIR------------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
            V P + +                    F + P+K   +A++++     G +   A+ L+
Sbjct: 241 -VEPEKVIAEAELAQGLGHRVGVFVPAAFADTPVKT--HAVVTV----PGSMDAYAYGLY 293

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +++  D  G   I  S  P  GLG+AI NRL RAA PR
Sbjct: 294 GFLRELDQQGCDLIVASLPPEEGLGLAIANRLRRAAGPR 332


>gi|315186249|gb|EFU20010.1| translation factor SUA5 [Spirochaeta thermophila DSM 6578]
          Length = 330

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 177/328 (53%), Gaps = 17/328 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++  TD   + +A   L  G  +A PTETVYGL  ++ +  A+ R++EIK+RP  +PLI
Sbjct: 5   RVVPATDET-IEEAARLLREGEAVAFPTETVYGLGANALDAVAVARIFEIKERPLFDPLI 63

Query: 62  CHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+S   MV +     P L+  L   FWPGPLTLVL       +  + TA L T   R+P
Sbjct: 64  VHISGEEMVGEVVREVPDLARTLMARFWPGPLTLVLP--KGERVPGIVTAGLPTVGVRMP 121

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LIE    P+A PSANR G +S T   H+ +  +   + L++DGG  ++G+EST
Sbjct: 122 AHPVARRLIEKAEVPIAAPSANRFGSLSPTRAGHV-AGQLGGRVALVLDGGACEVGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVR 237
           +V V+   +VR+LRPGG+ +E L+ A+          +     ++PGML  HYAP   V 
Sbjct: 181 VVRVEG-GQVRVLRPGGVPVEALEEAVGRGAVVVGGPEREGAQEAPGMLPWHYAPSVPVV 239

Query: 238 LRAIHVNP-----REA-LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           +      P     REA L+ F   P +    A+    LS  G L+EAA  LF  +   ++
Sbjct: 240 VLEGGAMPGAEEAREAGLLAFRGAPEEPAFRAVEV--LSPRGDLQEAAAGLFEGLHRLEE 297

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
           +G + I   ++P  GLG A+ +RL +AA
Sbjct: 298 AGVARIYAEAVPEVGLGRAVMDRLRKAA 325


>gi|170287882|ref|YP_001738120.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2]
 gi|170175385|gb|ACB08437.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2]
          Length = 335

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/328 (37%), Positives = 171/328 (52%), Gaps = 26/328 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  I  PTETVYG+  D+ N  A ++++E+K RPA NPLI H+   
Sbjct: 13  DEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSF 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A      L   K FWPGPLT++L   S   I P+ TA L T   R+P      K
Sbjct: 73  EQLEEIAEGYEPHLDFLKKFWPGPLTVILRKKSEK-IPPVVTAGLPTVAMRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE +GHP+A PSAN SG+ S TNVKH++   + K + LIID G +  GLESTIV++  E
Sbjct: 132 LIELFGHPIAAPSANISGRPSATNVKHVVEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190

Query: 187 KKVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           K V +LRPG +E+E LK      +  +     +    P +PGM   HYAP   + L    
Sbjct: 191 KPV-LLRPGPVEVERLKELFPGLVVPDFVRKGNFEGRPLAPGMKYRHYAPLKPLIL---- 245

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEA---AFNLFNYMKIADD 291
               E L +   V  K  ++ +I +   K         G LK+    A N+F+ ++ A+ 
Sbjct: 246 ---VEDLTKMEEVLKKYPDHVVICVEERKELYDDRIVVGSLKKPYSIAQNIFSALREAEK 302

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
            G   I        G+  A+ NRL +AA
Sbjct: 303 MGKEYIIVEGFEERGILFAVMNRLRKAA 330


>gi|240103997|ref|YP_002960306.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family
           [Thermococcus gammatolerans EJ3]
 gi|239911551|gb|ACS34442.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family
           [Thermococcus gammatolerans EJ3]
          Length = 343

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 177/326 (54%), Gaps = 24/326 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+ A   +  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPLI H+++   + 
Sbjct: 15  LKVAARLIVEGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPADNPLIIHIAESEWLF 74

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           + A  V  ++L LA+ FWPGPLTLVL       +  ++T  L T   R+P      +LI 
Sbjct: 75  ELAREVPEVALRLAERFWPGPLTLVLP--KGEKVPSVTTGGLDTVAVRMPAHPIALELIR 132

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T   H++     + I  IIDGG + IG+EST++++  E  V
Sbjct: 133 LSGRPIAAPSANISGKPSPTEADHVVDDFYGR-IECIIDGGPTPIGVESTVLDLTGEVPV 191

Query: 190 RILRPGGLEIETLKRAIS-VELEYCVD--ETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            +LRPGGL +E ++R I  V++   V   E +  ++PGM   HY+P +QV L      PR
Sbjct: 192 -LLRPGGLPLEDIERVIGRVDVHPAVKGIEVNLAKAPGMKYKHYSPNAQVILVE---GPR 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGK------------LKEAAFNLFNYMKIADDSGA 294
           EA+ R     ++   +  + + +  T K            ++E A N+F  ++  D +G 
Sbjct: 248 EAVRRKMEEIVEEFRSRGLKVGVMATEKYDADAFFHLGESMEEVARNVFRALRELDKAGV 307

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I    I   GLG+A+ NRL +AA 
Sbjct: 308 DVILAEGIEERGLGLAVMNRLRKAAG 333


>gi|189502130|ref|YP_001957847.1| hypothetical protein Aasi_0735 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497571|gb|ACE06118.1| hypothetical protein Aasi_0735 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 325

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/322 (36%), Positives = 180/322 (55%), Gaps = 22/322 (6%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A +FL  G  ++IPTETVYGLA ++ N  A+ +++ IK+RP  NPLI H+ DI  + +  
Sbjct: 11  ASKFLKQGEVVSIPTETVYGLAANAYNEAAVSKVFSIKQRPMSNPLIIHIGDIEQINEFV 70

Query: 75  SVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
              P  ++ LA+ FWPGPLTL+L   +T  I  + TA       R+P    T +L++T  
Sbjct: 71  KEIPSEAVILAQHFWPGPLTLLLPKKAT--IPDMVTAGSNKVAIRIPNHPVTLQLLKTIP 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PLA PSAN  G +S T  +H+    +  +IP I+ GG   +G+ESTIV  + + K  + 
Sbjct: 129 FPLAAPSANPFGYVSPTTTEHV-KEQLGDKIPYILMGGTCAVGIESTIVGFE-DGKTIVY 186

Query: 193 RPGGLEIETLKRAISVELEYCVDETSTP----QSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           R GGLEI ++++ +   + +     S P     +PG L  HY+P   ++L     N  + 
Sbjct: 187 RLGGLEIASIEKLVGTVILHNNLTASNPIEKLVTPGSLSYHYSPNKLLKLG----NMSDL 242

Query: 249 LIRFGN--VPIKNIENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           L+ +G+  V I   +     +N      L+ TGK++EAA+NLF  ++  D      I  S
Sbjct: 243 LVTYGSQKVGILAFDQYYEGVNKGQQILLAPTGKVEEAAYNLFAALRELDQLDIDVILCS 302

Query: 301 SIPNHGLGIAINNRLERAAAPR 322
            +P+ GLG+AIN+RL RA+A R
Sbjct: 303 LVPHQGLGMAINDRLVRASASR 324


>gi|307270731|ref|ZP_07552022.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248]
 gi|306513041|gb|EFM81682.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248]
          Length = 340

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 179/317 (56%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLSEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             L   FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|218516174|ref|ZP_03513014.1| probable translation factor protein [Rhizobium etli 8C-3]
          Length = 185

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/162 (54%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL  A   L  G  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M 
Sbjct: 24  ALEAASTALADGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMA 83

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           + HA+ DPLS  LA+ FWPGPLTLVL L   + IH L+TA L +   RVP GF   LI  
Sbjct: 84  EHHAAFDPLSRALAEAFWPGPLTLVLPLKPESPIHSLATAGLDSVGVRVPKGFAGALIGA 143

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           +G PLA PSAN SG IS T+  H+  + +  +IPLI+D G S
Sbjct: 144 FGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPS 184


>gi|332158705|ref|YP_004423984.1| sua5 superfamily-related protein [Pyrococcus sp. NA2]
 gi|331034168|gb|AEC51980.1| sua5 superfamily-related protein [Pyrococcus sp. NA2]
          Length = 340

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 180/335 (53%), Gaps = 30/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   LR A   +  G  +A PTETVYGL  D+ N +A+RR++E K RPA NPLI H+S  
Sbjct: 12  DERKLRIAARLIREGKLVAFPTETVYGLGADALNESAVRRIFEAKGRPADNPLIVHISSF 71

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124
           S V + A   P     LA+ FWPGPL +V   L  ++I P ++T  L T   R+P     
Sbjct: 72  SQVHELAREVPEEAKMLAREFWPGPLAIV---LPKSEIVPKVTTGGLDTVAIRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLIE  G P+A PSAN SG+ S T+ +H+ +     +I  I+DGG +KIG+EST++++ 
Sbjct: 129 LKLIELSGRPIAAPSANISGKPSPTSAEHV-AEDFYGKIECIVDGGETKIGVESTVIDLT 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRL--- 238
               V +LRPGGL +E ++R I  V +   V   +    ++PGM   HYAP ++V +   
Sbjct: 188 EWPPV-LLRPGGLPLEEIERVIGEVRVHPAVYGKKVDVAKAPGMKYRHYAPNAEVIVVEG 246

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIIS---------LNLSKTGKLKEAAFNLFNYMK 287
               +    RE +  F +   K ++  +I            L ++  ++E A NLF  ++
Sbjct: 247 SREKVGAKIRELVEEFKS---KGLKVGVIGSADYGADEFFFLGRS--VEEVARNLFKALR 301

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D +G   +    +   GLG+A+ NRL +A+  R
Sbjct: 302 YMDRAGVDIVIAEGVEEKGLGLAVMNRLRKASGYR 336


>gi|91762257|ref|ZP_01264222.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718059|gb|EAS84709.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 310

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/317 (35%), Positives = 172/317 (54%), Gaps = 15/317 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ + ++KA ++LD    I +PTETVYGLA ++   +A++++Y +KKRP  NPLI H  D
Sbjct: 3   SNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHD 62

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           I  +KK   ++   + L K F PGP+T VL L   + I    T N K+   R P     K
Sbjct: 63  IDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFK 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L++   +PLA PSAN + ++S  N K +      K+I  I+DGG   IG+ESTIVN+  
Sbjct: 123 NLLKQLDYPLAAPSANITTKVSAVNAKDV-KEEFGKKIKYILDGGTCAIGIESTIVNLTA 181

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLRAIH 242
             K  ILR GGL+I  +++A+  ++    + ++ P+   +PG  + HY+P   +R+    
Sbjct: 182 --KPTILRLGGLDISKIQKALGFKM----NISTNPKKKIAPGQSRLHYSPGIPLRMNVTK 235

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
               EA I       K          L+    L EAA  L++ ++   + G  SIA   I
Sbjct: 236 PKNDEAFIIIKKKKTKPKN----YFYLTSKSNLDEAAKKLYSCLRKIKNEGYKSIAVEKI 291

Query: 303 PNHGLGIAINNRLERAA 319
           PN GLG AIN+RL RA+
Sbjct: 292 PNIGLGKAINDRLRRAS 308


>gi|327535786|gb|AEA94620.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis OG1RF]
          Length = 340

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|29377040|ref|NP_816194.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583]
 gi|227554050|ref|ZP_03984097.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22]
 gi|229549322|ref|ZP_04438047.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
           29200]
 gi|255972031|ref|ZP_05422617.1| translation factor SUA5 [Enterococcus faecalis T1]
 gi|256763195|ref|ZP_05503775.1| translation factor SUA5 [Enterococcus faecalis T3]
 gi|256957796|ref|ZP_05561967.1| translation factor SUA5 [Enterococcus faecalis DS5]
 gi|256963676|ref|ZP_05567847.1| translation factor SUA5 [Enterococcus faecalis HIP11704]
 gi|257079734|ref|ZP_05574095.1| translation factor SUA5 [Enterococcus faecalis JH1]
 gi|257084462|ref|ZP_05578823.1| translation factor SUA5 [Enterococcus faecalis Fly1]
 gi|257419963|ref|ZP_05596957.1| translation factor SUA5 [Enterococcus faecalis T11]
 gi|294779686|ref|ZP_06745076.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1]
 gi|300860679|ref|ZP_07106766.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|307271622|ref|ZP_07552893.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855]
 gi|312953586|ref|ZP_07772423.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102]
 gi|29344506|gb|AAO82264.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583]
 gi|227176798|gb|EEI57770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22]
 gi|229305559|gb|EEN71555.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
           29200]
 gi|255963049|gb|EET95525.1| translation factor SUA5 [Enterococcus faecalis T1]
 gi|256684446|gb|EEU24141.1| translation factor SUA5 [Enterococcus faecalis T3]
 gi|256948292|gb|EEU64924.1| translation factor SUA5 [Enterococcus faecalis DS5]
 gi|256954172|gb|EEU70804.1| translation factor SUA5 [Enterococcus faecalis HIP11704]
 gi|256987764|gb|EEU75066.1| translation factor SUA5 [Enterococcus faecalis JH1]
 gi|256992492|gb|EEU79794.1| translation factor SUA5 [Enterococcus faecalis Fly1]
 gi|257161791|gb|EEU91751.1| translation factor SUA5 [Enterococcus faecalis T11]
 gi|294453240|gb|EFG21652.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1]
 gi|300849718|gb|EFK77468.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|306511500|gb|EFM80499.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855]
 gi|310628424|gb|EFQ11707.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102]
 gi|315035854|gb|EFT47786.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0027]
 gi|315151853|gb|EFT95869.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0031]
 gi|315159266|gb|EFU03283.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0312]
 gi|315170193|gb|EFU14210.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1342]
 gi|315172488|gb|EFU16505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1346]
 gi|315574710|gb|EFU86901.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309B]
 gi|315580978|gb|EFU93169.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309A]
 gi|323481492|gb|ADX80931.1| SUA5 domain protein [Enterococcus faecalis 62]
 gi|329578088|gb|EGG59501.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1467]
          Length = 340

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|256961205|ref|ZP_05565376.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96]
 gi|293384154|ref|ZP_06630048.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712]
 gi|293386968|ref|ZP_06631537.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613]
 gi|312907895|ref|ZP_07766878.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
           512]
 gi|312978576|ref|ZP_07790314.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
           516]
 gi|256951701|gb|EEU68333.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96]
 gi|291078634|gb|EFE15998.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712]
 gi|291083638|gb|EFE20601.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613]
 gi|310625986|gb|EFQ09269.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
           512]
 gi|311288725|gb|EFQ67281.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
           516]
 gi|315161812|gb|EFU05829.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0645]
          Length = 340

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  IS V+++ + + E + P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|312899931|ref|ZP_07759249.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470]
 gi|311292927|gb|EFQ71483.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470]
          Length = 340

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ KH+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAKHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|254420853|ref|ZP_05034577.1| Sua5/YciO/YrdC/YwlC family protein, putative [Brevundimonas sp.
           BAL3]
 gi|196187030|gb|EDX82006.1| Sua5/YciO/YrdC/YwlC family protein, putative [Brevundimonas sp.
           BAL3]
          Length = 309

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/321 (37%), Positives = 167/321 (52%), Gaps = 19/321 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+    +   +A   L  G  I +PTETVYGL  D+ N  A+  +++ K RP  NPLI H
Sbjct: 1   MTQRSGDTADQAATALRRGELILLPTETVYGLGADAGNAEAVAAIFQAKGRPRFNPLISH 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
           V+D    +     D  +  LA+ FWPGPLTLV  +     +  L+ A L +   RVP   
Sbjct: 61  VADAVAAEAVGVFDVSARALAEAFWPGPLTLVTPVRDGGRVCDLARAGLDSVAIRVPGHA 120

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + ++  +G P+  PSANRSG+ S TN    +  +    +   +DGG   +GLEST+V+
Sbjct: 121 AARAVLSAFGGPVVAPSANRSGRPSPTNFADAVEET-GFAVTAAVDGGPCAVGLESTVVS 179

Query: 183 VQCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           V    +V +LRPG +   EIE +       +    D     +SPG L +HYAP + VR+ 
Sbjct: 180 V-LGGRVSLLRPGAVTRAEIEAV-------VGPLADGGDGHRSPGRLAAHYAPDAPVRID 231

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
              V PR+  I  G  P           +LS +G L+EAA NLF   + AD +  + IA 
Sbjct: 232 V--VAPRDGEILLGFGPGAGDPR----WSLSVSGDLREAAANLFRLFREADRTHPAGIAV 285

Query: 300 SSIPNHGLGIAINNRLERAAA 320
           S IP+ GLG AIN+RL RAA 
Sbjct: 286 SPIPSQGLGEAINDRLRRAAG 306


>gi|257090698|ref|ZP_05585059.1| translation factor SUA5 [Enterococcus faecalis CH188]
 gi|312905239|ref|ZP_07764359.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635]
 gi|256999510|gb|EEU86030.1| translation factor SUA5 [Enterococcus faecalis CH188]
 gi|310631476|gb|EFQ14759.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635]
 gi|315579266|gb|EFU91457.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0630]
          Length = 340

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 177/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK- 258
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261

Query: 259 -------------NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
                        +IEN  +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDKQAAQLDIENVFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|149174845|ref|ZP_01853469.1| sua5 related protein [Planctomyces maris DSM 8797]
 gi|148846182|gb|EDL60521.1| sua5 related protein [Planctomyces maris DSM 8797]
          Length = 325

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 176/328 (53%), Gaps = 25/328 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  ++ A   +  G  +A  TETVYGL  ++ NP A+ +++ +K+RP  +PLI H++   
Sbjct: 6   SQNIQAAANLIRLGELVAFATETVYGLGANALNPEAVAQIFAVKQRPHFDPLIVHIASTG 65

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + +  +     +  LA  FWPGPLTLVL       +  L T+ L +   R+P     +K
Sbjct: 66  QLDELTTEFSSTAEKLASTFWPGPLTLVLP--KKKVVPDLVTSGLDSVAIRIPAHPVARK 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    P+A PSAN+ G++S T    + +  +  EI LI+DGG   +G+EST++    +
Sbjct: 124 LLEITQLPIAAPSANKFGRLSPTRAVDV-AEQLGDEIKLILDGGPCTVGVESTVIQCLGD 182

Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           + V +LRPGG+ +E ++  I      ELE    E ++P SPGML  HYAP +    R I 
Sbjct: 183 QPV-LLRPGGISLEEIQACIGEIRLAELEDYA-EANSPVSPGMLPKHYAPST----RLII 236

Query: 243 VNPREALIRFGNV------PIKNIE----NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
           V+  E L   G++      P+K+ E       +   LS TG LK AA N F  ++  D +
Sbjct: 237 VDHPEQLPAAGSLGVLSLYPLKDTEFRDCQFTVQQILSPTGDLKMAAANFFAALRKLDAA 296

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G   I    +P  GLG  INNRLERAAA
Sbjct: 297 GIDQIVALRLPETGLGRTINNRLERAAA 324


>gi|15643615|ref|NP_228661.1| hypothetical protein TM0852 [Thermotoga maritima MSB8]
 gi|4981386|gb|AAD35934.1|AE001752_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 335

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 171/331 (51%), Gaps = 32/331 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  I  PTETVYG+  D+ N  A ++++++K+RPA NPLI H+   
Sbjct: 13  DEKVLKEAAELLRNGEVIIFPTETVYGIGADAYNEEACKKIFKLKERPADNPLIVHIHSF 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A      L   K FWPGPLT++    S   I P+ TA+L T   R+P      K
Sbjct: 73  KQLEEIAEGYEPHLDFLKKFWPGPLTVIFRKKSEK-IPPVVTADLPTVAVRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE +GHP+A PSAN SG+ S TNVKH++   + K + LIID G +  GLESTIV++  E
Sbjct: 132 LIELFGHPIAAPSANISGRPSATNVKHVIEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDE-------TSTPQSPGMLKSHYAPRSQVRLR 239
           K V +LRPG +E+E LK       E  V +          P +PGM   HYAP   + L 
Sbjct: 191 KPV-LLRPGPVEVERLKELFP---ELVVPDFVRKGNFKGRPLAPGMKYRHYAPLKPLIL- 245

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEA---AFNLFNYMKI 288
                  E L +   V  K  ++ +I +   K         G LK     A N+F+ ++ 
Sbjct: 246 ------VEDLTKMEEVLKKYPDHVVICVEERKELYDDRIVVGSLKNPYSIAQNIFSALRE 299

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           A+  G   I        G+  A+ NRL +AA
Sbjct: 300 AEKMGKEYIIVEGFEERGILFAVMNRLRKAA 330


>gi|227519762|ref|ZP_03949811.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104]
 gi|227072850|gb|EEI10813.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104]
          Length = 340

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++   T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPRDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPRVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  +K A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VKNATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|295113544|emb|CBL32181.1| translation factor SUA5 [Enterococcus sp. 7L76]
          Length = 340

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 178/317 (56%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             L   FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  IS V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AEIGLGTAYMNRLKKSA 333


>gi|16801746|ref|NP_472014.1| hypothetical protein lin2685 [Listeria innocua Clip11262]
 gi|16415221|emb|CAC97911.1| lin2685 [Listeria innocua Clip11262]
          Length = 345

 Score =  175 bits (444), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 182/330 (55%), Gaps = 19/330 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +KA E L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++    + +
Sbjct: 19  QKAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQ 78

Query: 73  H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             AS  P +L L + FWPGPLT++L L   +    +S A L T   R+P    + +LI T
Sbjct: 79  FIASYPPKALQLMEAFWPGPLTVILPLKKDSLAANVS-AGLSTVGVRMPEHPVSLELIAT 137

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSANRSG+ S T  +H++   +  EI  IIDGG + +GLEST+++   +  + 
Sbjct: 138 ANIPIAAPSANRSGKPSPTTAEHVI-EDLDGEIAGIIDGGPTGVGLESTVIDCSLDVPI- 195

Query: 191 ILRPGGLEIETLKRAI-SVELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           ILRPGG+ IE +++ I +V+L      ET  P++PGM  +HYAP++ V L        ++
Sbjct: 196 ILRPGGITIEQIEQVIGTVDLSTNSTTETEKPKAPGMKYTHYAPKAPVYLVEGSSQFWQS 255

Query: 249 LI--------RFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296
            I        + G +  K + + +  S  +  TG +K   E A +L+  ++  D +    
Sbjct: 256 EINKVGIAGKKLGILATKELTSKLATSAVIQSTGSIKAMDEIATSLYKGLRAFDHADVDI 315

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           I     P   LG AI NRLE+AA  R  S+
Sbjct: 316 IFAEVYPETELGAAIMNRLEKAAGNRRISE 345


>gi|257081920|ref|ZP_05576281.1| translation factor SUA5 [Enterococcus faecalis E1Sol]
 gi|307287619|ref|ZP_07567662.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109]
 gi|256989950|gb|EEU77252.1| translation factor SUA5 [Enterococcus faecalis E1Sol]
 gi|306501357|gb|EFM70660.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109]
 gi|315165016|gb|EFU09033.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1302]
          Length = 340

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              EN  +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDKQAAQLDTENVFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|315032689|gb|EFT44621.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0017]
 gi|315143716|gb|EFT87732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2141]
          Length = 340

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              EN  +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENTFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|256616931|ref|ZP_05473777.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
           4200]
 gi|307276804|ref|ZP_07557915.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134]
 gi|256596458|gb|EEU15634.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
           4200]
 gi|306506441|gb|EFM75600.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134]
          Length = 340

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDDQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|229545078|ref|ZP_04433803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322]
 gi|229309970|gb|EEN75957.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322]
          Length = 340

 Score =  175 bits (443), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              EN  +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDKQAAQLDTENVFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|257087539|ref|ZP_05581900.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6]
 gi|256995569|gb|EEU82871.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6]
 gi|315025304|gb|EFT37236.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2137]
          Length = 340

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNKAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|315148530|gb|EFT92546.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4244]
          Length = 340

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++   T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPRDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|313622340|gb|EFR92826.1| protein Sua5 [Listeria innocua FSL J1-023]
          Length = 345

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 179/337 (53%), Gaps = 33/337 (9%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +KA E L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++    + +
Sbjct: 19  QKAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQ 78

Query: 73  H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             AS  P +L L + FWPGPLT++L L   +    +S A L T   R+P    + +LI T
Sbjct: 79  FIASYPPKALQLMEAFWPGPLTVILPLKKDSLAANVS-AGLSTVGVRMPEHPVSLELIAT 137

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSANRSG+ S T  +H++   +  E+  IIDGG + +GLEST+++   +  + 
Sbjct: 138 ANIPIAAPSANRSGKPSPTTAEHVI-EDLDGEVAGIIDGGPTGVGLESTVIDCSLDVPI- 195

Query: 191 ILRPGGLEIETLKRAI-SVELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           ILRPGG+  E +++ I +V+L    V ET  P++PGM  +HYAP++ V L        E 
Sbjct: 196 ILRPGGITKEQIEQVIGTVDLSTNSVTETEKPKAPGMKYTHYAPKAPVYL-------VEG 248

Query: 249 LIRFGNVPIKNIENAIISLN----------------LSKTGKLK---EAAFNLFNYMKIA 289
             +F    I  +E A   L                 +  TG +K   E A +L+  ++  
Sbjct: 249 SSQFWQSEINKVETAGKKLGILATKELTSKLATSAVIQPTGSIKAMDEIATSLYKGLRAF 308

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           D +    I     P   LG AI NRLE+AA  R  S+
Sbjct: 309 DHADVDIIFAEVYPETELGAAIMNRLEKAAGNRRISE 345


>gi|327441446|dbj|BAK17811.1| putative translation factor [Solibacillus silvestris StLB046]
          Length = 343

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 184/335 (54%), Gaps = 19/335 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +S    +A + L+ G  +A PTETVYGL   + N  A+++++  K RP+ NPLI H+ 
Sbjct: 12  VDNSENYTQAVDLLNNGEIVAFPTETVYGLGAVATNEQAVKKIFAAKGRPSDNPLIVHIG 71

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            +  V  + + +  ++ +  + FWPGPLTLV+D+     + P  TA L T   R+P    
Sbjct: 72  TVEEVSLYTTNISEVAQNCMEAFWPGPLTLVMDVKPNV-LAPSVTAGLDTVGIRMPDHPV 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L++T   PLA PSANRSG+ S T  +H+    +   IP I+DGG++ IGLEST+++V
Sbjct: 131 ALELLQTLKKPLAAPSANRSGKPSPTKAEHVF-EDLQNIIPCILDGGVTGIGLESTVLDV 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDET---STPQSPGMLKSHYAPRSQVRL-- 238
             +  V ILRPGG+  E L+  I   +E  +++    STP++PGM  +HYAP + V L  
Sbjct: 190 TLDTPV-ILRPGGVTKEMLEAVIGPVVEPSLEQQKIDSTPKAPGMKYTHYAPDAPVYLIE 248

Query: 239 ---RAI-----HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
              +AI      + P   +        + IE A    +      L++ + +L++ ++  D
Sbjct: 249 ANKKAIETAIAELKPVHKVALLAPQNFEEIE-ADYYFSFGSAHDLEQMSASLYDALRSCD 307

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            + A+ I  ++    G+G AI NRLE+AA  +  S
Sbjct: 308 KTDATIILATATSKTGVGTAIMNRLEKAAGGKWYS 342


>gi|18976678|ref|NP_578035.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638]
 gi|18892255|gb|AAL80430.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638]
          Length = 341

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 175/333 (52%), Gaps = 30/333 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   LR A   +  G  +A PTETVYGL  D+ N  A RR++E K RPA NPLI H+++ 
Sbjct: 12  DERKLRVAARLIREGKLVAFPTETVYGLGADALNEKAARRIFEAKGRPADNPLIVHIAEF 71

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124
           S V + A   P     LAK FWPGPLT+V   L   +I P ++T  L T   R+P     
Sbjct: 72  SQVYELAREVPEEAKMLAKKFWPGPLTIV---LPRREIVPDVTTGGLDTVAIRMPANEIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI+  G P+A PSAN SG+ S T  +H+ +     +I  IIDGG +KIG+EST++++ 
Sbjct: 129 LKLIKLSGRPIAAPSANISGKPSPTTAEHV-ADDFYGKIECIIDGGETKIGVESTVIDL- 186

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAI 241
            E    +LRPGGL +E +++ I  V +   V   +    +SPGM   HYAP ++V    +
Sbjct: 187 TEWPPVLLRPGGLPLEEIEKVIGEVRIHPAVFGKKVDVAKSPGMKYKHYAPDAEV---IV 243

Query: 242 HVNPREALIRFGNVPIKNIE--------------NAIISLNLSKTGKLKEAAFNLFNYMK 287
              P+E + R     +K  +              NA     L +T  ++E A NLF  ++
Sbjct: 244 VEGPKEKVKRKIAELVKEFKEKGKRVGVIGSESYNADEFFYLGET--VEEVARNLFKALR 301

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             D +    +    +   GLG+A+ NRL +AA 
Sbjct: 302 YMDKAKVDIVLAEGVEEKGLGLAVMNRLRKAAG 334


>gi|257421858|ref|ZP_05598848.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|257163682|gb|EEU93642.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|315155437|gb|EFT99453.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0043]
          Length = 340

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 176/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             L   FWPGPLTL+ ++   T      T  L+T  FR+P    T  LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFNVPRDT-FSKTVTGGLETVAFRMPDNQATLTLIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGSTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESVIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              EN  +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENTFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|116873906|ref|YP_850687.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742784|emb|CAK21908.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 345

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 182/345 (52%), Gaps = 35/345 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +++ +  ++A + L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++
Sbjct: 12  LSNQSIYQEAAKLLQKGECVAFPTETVYGLGADATNQAAIQKIYTAKGRPSDNPLIVHIA 71

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               + +   S  P ++ L + FWPGPLTL+L L+  +    +S A L T   R+P    
Sbjct: 72  RREQMDQFVESYPPKAIQLMEKFWPGPLTLILPLIKDSLAANVS-AGLSTVGVRMPEHPV 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +  LI+T   P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++ 
Sbjct: 131 SLDLIKTANIPVAAPSANRSGKPSPTTAAHVI-EDLDGKIAGIIDGGPTGVGLESTVIDC 189

Query: 184 QCEKKVRILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
             E  V ILRPGG+  E ++R I  V++      ET  P++PGM  +HYAP++ V L   
Sbjct: 190 SQETPV-ILRPGGITKEQIERVIGPVKVATNSTTETEQPKAPGMKYTHYAPKAPVYL--- 245

Query: 242 HVNPREALIRFGNVPIKNIE--------------------NAIISLNLSKTGKLKEAAFN 281
                E   +F    I  +E                    NA+I    S T  L+E A +
Sbjct: 246 ----IEGSAKFWQSEIDKVEAAHKKLGILATKELTSSLSTNAVIQTTGS-TRALEEVATS 300

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           L+N ++  D +    I     P   LG AI NRLE+AA  R  S+
Sbjct: 301 LYNGLRAFDHADVDVIFAEVYPETELGAAIMNRLEKAAGNRRISE 345


>gi|71083313|ref|YP_266032.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062426|gb|AAZ21429.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 310

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 170/317 (53%), Gaps = 15/317 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ + ++KA ++LD    I +PTETVYGLA ++   +A++++Y +KKRP  NPLI H  D
Sbjct: 3   SNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHD 62

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           I  +KK   ++   + L K F PGP+T VL L   + I    T N K+   R P     K
Sbjct: 63  IDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFK 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L++   +PLA PSAN + ++S    K +       +I  I+DGG   IG+ESTIVN+  
Sbjct: 123 NLLKQLDYPLAAPSANITTKVSAVKAKDV-KEEFGNKIKYILDGGTCAIGIESTIVNLTA 181

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLRAIH 242
             K  ILR GGL+I  +++A+  ++    + ++ P+   +PG  + HY+P   +R+    
Sbjct: 182 --KPTILRLGGLDISKIQKALGFKM----NISTNPKKKIAPGQSRLHYSPGIPLRMNVTK 235

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
               EA I       K          L+    L EAA NL++ ++   + G  SIA   I
Sbjct: 236 PKNNEAFILIKKKKTKLKS----YFYLTSKSNLDEAAKNLYSCLRKIKNKGYKSIAVEKI 291

Query: 303 PNHGLGIAINNRLERAA 319
           PN GLG  IN+RL RA+
Sbjct: 292 PNIGLGKTINDRLRRAS 308


>gi|297564656|ref|YP_003683628.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus silvanus DSM 9946]
 gi|296849105|gb|ADH62120.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus silvanus DSM 9946]
          Length = 327

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 175/315 (55%), Gaps = 9/315 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    + +A   +  G  +A PTETVYGL  ++ + +A+ R++E K+RP+++PLI HV+D
Sbjct: 15  TTPREIEQAARVIREGGLVAFPTETVYGLGANALDASAVARIFEAKRRPSLDPLIVHVAD 74

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            +M+ + A  V P    L + FWPGPLTLVL       +  + T+ L T   R+P     
Sbjct: 75  RAMLLRVAREVPPQVEPLMEKFWPGPLTLVLP--KAEAVPGIVTSGLPTVAVRMPAHPVA 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN  G +S T  +H+    + + + LI+DGG +  G+ESTI+ + 
Sbjct: 133 LELIRQAGLPIAAPSANPFGYLSPTRAEHV-ERMLGEAVDLILDGGPTLYGVESTIL-LL 190

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            EK V +LR G + +E L+ +I   +E  V E+  P  PG L  HYAPR+ +++      
Sbjct: 191 AEKPV-VLRHGAIPLEELE-SILGRVELRVGESVRPLVPGQLPQHYAPRTPIQVARPDEV 248

Query: 245 PREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
           P+E   + G +  +++     I   LS TG L+EAA +LF  +   D  G  +I    +P
Sbjct: 249 PKELRKQSGYLAFRDVPKGFKIVKVLSPTGDLREAAAHLFEALHQLDRLGLPAIYAEPVP 308

Query: 304 NHGLGIAINNRLERA 318
             GLG AI +RL RA
Sbjct: 309 EEGLGRAIMDRLRRA 323


>gi|308071165|ref|YP_003872770.1| hypothetical protein PPE_04472 [Paenibacillus polymyxa E681]
 gi|305860444|gb|ADM72232.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 415

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 176/346 (50%), Gaps = 34/346 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     +R+A   L AG  +A PTETVYGL  D+R+  A+  ++  K RP+ NPLI H+S
Sbjct: 71  IAAEKGIREASVLLQAGETVAFPTETVYGLGADARSTKAVEAVFVAKGRPSDNPLIVHIS 130

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D   ++   S ++  +  L  +FWPGPLTLVL ++    +    TA L T   R+P    
Sbjct: 131 DADQLEGMVSEINDTARELMNMFWPGPLTLVLPVVPQA-LSSRVTAGLDTVGVRMPDHPI 189

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +LI   G PLA PSANRSG+ S T  +H+    +   I  I+DGG + +GLEST+V  
Sbjct: 190 ALRLIAEAGCPLAAPSANRSGRPSPTLARHV-REDLEGRIGGILDGGPTGVGLESTVVQA 248

Query: 184 QCEKKVRILRPGGLEIE---TLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQ 235
             +  V ILRPGG+  E   T+ RA+ ++           ++  P+SPGM  +HYAPR +
Sbjct: 249 GDDGTVTILRPGGVTAEQLATVARAVVLDPALAATPGEDADSPAPRSPGMKYTHYAPRGR 308

Query: 236 VRL----RAIHVNPREALIR--FGNVPIKNIENAIISLN-------------LSKTGKLK 276
           + +     ++ V      IR        +    A+++ +             L K   L 
Sbjct: 309 LSVVQGPSSVKVT---GWIRAALAEASARGERTAVLAFDEHAAGYAGERVYTLGKLDALH 365

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           EAA  L+  ++  D+ G + I   S P  GLG A+ NRL +AA  R
Sbjct: 366 EAAQRLYGVLRRCDEDGVTYILSESCPPKGLGDAVMNRLLKAAGHR 411


>gi|256853868|ref|ZP_05559233.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis T8]
 gi|307290431|ref|ZP_07570346.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0411]
 gi|256710811|gb|EEU25854.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis T8]
 gi|306498624|gb|EFM68126.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0411]
 gi|315030389|gb|EFT42321.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4000]
          Length = 340

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL   + N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGAAALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|315168546|gb|EFU12563.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1341]
          Length = 340

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 176/314 (56%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+  A++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQRATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|255975088|ref|ZP_05425674.1| translation factor SUA5 [Enterococcus faecalis T2]
 gi|307285599|ref|ZP_07565738.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860]
 gi|255967960|gb|EET98582.1| translation factor SUA5 [Enterococcus faecalis T2]
 gi|306502823|gb|EFM72088.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860]
          Length = 340

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 175/314 (55%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++ S T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPSDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              EN  +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDKQAAQLDTENVFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|302383673|ref|YP_003819496.1| Sua5/YciO/YrdC/YwlC family protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194301|gb|ADL01873.1| Sua5/YciO/YrdC/YwlC family protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 325

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 161/313 (51%), Gaps = 13/313 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L  A   L AG  + +PTETVYGLA D+    A+ R++E K RP  NPLI HV+D  
Sbjct: 22  SEGLDAAVAALRAGDLVILPTETVYGLAADAGRAEAVARIFEAKGRPRFNPLIAHVADTG 81

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
             +  A  D  +  LA  FWPGPLT+V  +     +  L+ A L +   RVP     + L
Sbjct: 82  AAEAIAVFDDAARALAAAFWPGPLTIVAPVRPGDRVCDLARAGLDSVAVRVPGHPVARAL 141

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +G P+  PSANRSG+ S T     +  +        +DGG   +G+EST+V+V  + 
Sbjct: 142 LQAFGGPVVAPSANRSGRPSPTTFADAMEET-GSSAAAALDGGPCDVGVESTVVSV-LDG 199

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           +V +LRPG +  + ++  +        +     +SPG L  HYAP + VR+ A      E
Sbjct: 200 RVTLLRPGAVTRDQIEALVG----PLAESDHGHRSPGRLTLHYAPDAPVRIDAETAGEGE 255

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            L+ FG        +     NLS +G  +EAA  LF  ++ AD      IA + +P  GL
Sbjct: 256 ILLGFGP------GSGDPRWNLSPSGDPREAAAKLFRLLREADREHPVGIAVAPVPMAGL 309

Query: 308 GIAINNRLERAAA 320
           G AIN+RL RAA 
Sbjct: 310 GEAINDRLRRAAG 322


>gi|315150061|gb|EFT94077.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0012]
          Length = 340

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 175/314 (55%), Gaps = 23/314 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ +  P ++  L
Sbjct: 24  VAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVATKL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+ ++   T      T  L+T  FR+P    T  LIE    PL  PSAN 
Sbjct: 84  VSAFWPGPLTLIFNVPRDT-FSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPSANT 142

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIET 201
           SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++  E  V  ILRPG +  E 
Sbjct: 143 SGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAITKEQ 201

Query: 202 LKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+      + 
Sbjct: 202 LESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQQEK 261

Query: 260 I--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           I              ENA +    ++T  ++ A   LF  ++  D+ GA++I        
Sbjct: 262 IGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGFAET 319

Query: 306 GLGIAINNRLERAA 319
           GLG A  NRL+++A
Sbjct: 320 GLGTAYMNRLKKSA 333


>gi|315230833|ref|YP_004071269.1| YrdC/Sua5 protein [Thermococcus barophilus MP]
 gi|315183861|gb|ADT84046.1| putative YrdC/Sua5 protein [Thermococcus barophilus MP]
          Length = 341

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 176/331 (53%), Gaps = 23/331 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D+  ++ A +F+  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPLI H++ 
Sbjct: 11  VDNRKIKIAAKFIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIVHIAR 70

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
              + + A   P     LA+ FWPGPLT+VL      ++   +T  L T   R+P     
Sbjct: 71  FEQLYELARNVPREAEILAEHFWPGPLTIVLP--KKDNVPKTTTGGLDTVAIRMPAHEIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI+  G P+A PSAN SG+ S T  +H++     + I  IIDGG  KIG+EST++++ 
Sbjct: 129 LNLIKASGRPIAAPSANISGKPSPTLAEHVVDDFYGR-IECIIDGGEVKIGVESTVLDLT 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQV----- 236
             K   +LRPGGL +E ++R I  +++   V   +    ++PGM   HYAP +QV     
Sbjct: 188 T-KPPTLLRPGGLPLEEIERIIGRIKIHPAVKGKTVDIAKAPGMKYKHYAPNAQVIVIEG 246

Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                  +++ +    ++  I+ G +   +   A   +NL  +   +E A NLF  ++  
Sbjct: 247 NREKVKEKIKELLKEYKKRGIKVGIMATGDFYEADAYVNLGNSE--EEVAKNLFRALREL 304

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D SG   I    I   GLG+A+ NRL +AA 
Sbjct: 305 DKSGVDVILAEGIEEKGLGLAVMNRLRKAAG 335


>gi|281411518|ref|YP_003345597.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10]
 gi|281372621|gb|ADA66183.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10]
          Length = 335

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/328 (36%), Positives = 172/328 (52%), Gaps = 26/328 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   L++A E L  G  I  PTETVYG+  D+ N  A ++++E+K RPA NPLI H+  +
Sbjct: 13  NEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSL 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A      L   K FWPGPLT++L   S   I P+ TA L T   R+P      K
Sbjct: 73  EQLEEIAEGYEPHLDFLKKFWPGPLTVILRKKSEK-IPPVVTAGLPTVAVRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE +G+P+A PSAN SG+ S TNVKH++   + K + LIID G +  GLESTIV++  E
Sbjct: 132 LIELFGNPIAAPSANISGRPSATNVKHVVEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190

Query: 187 KKVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           K V +LRPG +E+E LK      +  +     +    P +PGM   HYAP   + L    
Sbjct: 191 KPV-LLRPGPVEVERLKELFPGLVVPDFVRKGNFKGRPLAPGMKYRHYAPLKPLIL---- 245

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEA---AFNLFNYMKIADD 291
               E L +   V  K  ++ +I +   K         G LK+    A N+F+ ++ A+ 
Sbjct: 246 ---VEDLTKMEEVLKKYPDHVVICVQERKELYDDRIVVGSLKKPYSIAQNIFSALREAEK 302

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
            G   I        G+  A+ NRL +AA
Sbjct: 303 MGKEYIIVEGFEERGILFAVMNRLRKAA 330


>gi|160881865|ref|YP_001560833.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans
           ISDg]
 gi|160430531|gb|ABX44094.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans
           ISDg]
          Length = 352

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 183/341 (53%), Gaps = 37/341 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S   ++A E L  G  +A PTETVYGL  D+ + TA RR+YE K RP+ NPLI H+++I
Sbjct: 14  NSEDFKEAVELLKEGQLVAFPTETVYGLGGDALDKTAARRIYEAKGRPSDNPLIVHIANI 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             +K+ A  V   +  LA  FWPGPLT++   L  +D+ PL +T  L T   R+P     
Sbjct: 74  EALKELAVEVPEEAYRLADDFWPGPLTMI---LKKSDLVPLETTGGLDTVAIRMPSDEIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNV 183
           ++LI+  G  LA PSAN+SG+ S T  +H++     C  + +IIDGG S IGLESTIV++
Sbjct: 131 RRLIKESGLYLAAPSANKSGRPSTTKAEHVIEDLDGC--VSMIIDGGSSTIGLESTIVDL 188

Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYCV--DETSTP---QSPGMLKSHYAPRSQVR 237
             +  V ILRPG +  E L + I   E +  V   E S P   ++PGM   HYAP+ Q+ 
Sbjct: 189 TGDNPV-ILRPGFITREMLNQCIGGTEYDKAVLKKEKSDPVVAKAPGMKYRHYAPKGQLT 247

Query: 238 ---------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE---------AA 279
                    ++AI+   ++      +V I   E    + NL   G +K           A
Sbjct: 248 IYEGDTNQVIKAINEAAKQKTEEGFHVGILATEE---TKNLYSYGDVKSIGTRKNEETIA 304

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +LF  ++  D S A+ I   S  ++ LG AI NRL +AA 
Sbjct: 305 AHLFECLREFDTSNAAYIFSESFEDNYLGQAIMNRLLKAAG 345


>gi|291294802|ref|YP_003506200.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus ruber DSM 1279]
 gi|290469761|gb|ADD27180.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus ruber DSM 1279]
          Length = 316

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 169/312 (54%), Gaps = 9/312 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + + +G  +A PTETVYGL  ++ +  A  R++E K+RP+ +PLI HV+D  M++
Sbjct: 10  LERAAQIIRSGGLVAFPTETVYGLGANALDARAAARIFEAKQRPSFDPLIVHVADRGMLQ 69

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
           K     P L+  L + FWPGPLTLVL    +  +  L T+ L T   R+P     ++LI 
Sbjct: 70  KVVQEVPALAERLMERFWPGPLTLVLP--RSERVPGLVTSGLPTVAVRMPAHPVAQELIR 127

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN  G +S T  +H+    +   + LI+DGG ++ G+ESTIV +   +K 
Sbjct: 128 RAGLPLAAPSANPFGYLSPTRAEHV-ERMLGGRVDLILDGGRTEFGVESTIVLLA--EKP 184

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LR G + +E L+R +   LE  V     P  PG L  HYAP + +R+      P    
Sbjct: 185 TVLRYGAVAVEELERVLG-RLELQVGAREKPLVPGQLPQHYAPHTPIRIAPPSEIPLGLR 243

Query: 250 IRFGNVPIKNIENAIISLN-LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
            R G +  + +      +  LS TG L EAA +LF  +   D  G  +I    IP  GLG
Sbjct: 244 KRVGYLAFQEVPKGFKVVKVLSPTGSLLEAAAHLFEALHQLDRLGLEAIYAEPIPEVGLG 303

Query: 309 IAINNRLERAAA 320
            AI +RL RA++
Sbjct: 304 RAIMDRLRRASS 315


>gi|332663181|ref|YP_004445969.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331995|gb|AEE49096.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 317

 Score =  172 bits (435), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 118/313 (37%), Positives = 169/313 (53%), Gaps = 11/313 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E L  G  IAIPTETVYGLA ++ + + + +++ IK+RP+ +PLI HV D+  ++  
Sbjct: 8   QAAELLKRGEVIAIPTETVYGLAGNALDESTVAKIFAIKQRPSFDPLIVHVPDLQSLENW 67

Query: 74  ASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
               P +   LA+ F PG LTL+L+   T  I  L TA       R+P     ++L+   
Sbjct: 68  VQNIPTAARQLAQHFMPGALTLLLEKKET--ISDLVTAGSPLVAMRIPAHPLAQELLRLL 125

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             PLA PSAN  G IS T  +H+ +  +  +IP I+DGG   IGLESTIV    E +  I
Sbjct: 126 PFPLAAPSANPFGYISPTRAEHV-AHQLGDQIPYILDGGPCTIGLESTIVGF-PEGRATI 183

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPREALI 250
            R GG+ +E ++  I   ++     +S PQ+PGMLKSHYAPR  + L +   + P+    
Sbjct: 184 FRKGGIPVEAIEAVIG-PVQVQAHSSSNPQAPGMLKSHYAPRIPLVLGKLTELIPQHQGK 242

Query: 251 RFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             G +  +     I S     LS +G   EAA NLF+ M+  D      I    +P   L
Sbjct: 243 AIGVLSFQERYPEIPSERQFALSSSGDYTEAARNLFSAMRYLDQLPLDLIVAELLPEENL 302

Query: 308 GIAINNRLERAAA 320
           G AIN+RL RA++
Sbjct: 303 GRAINDRLRRASS 315


>gi|83815217|ref|YP_445718.1| SUA5 protein [Salinibacter ruber DSM 13855]
 gi|83756611|gb|ABC44724.1| SUA5 protein [Salinibacter ruber DSM 13855]
          Length = 330

 Score =  172 bits (435), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 178/323 (55%), Gaps = 15/323 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ T + +  +A + L  G  +A PTETVYGL  D+  P A+RR++E K RPA NPLI H
Sbjct: 16  VATTRTTSPTEAADRLRRGELVAFPTETVYGLGADAFQPDAVRRIFEAKGRPADNPLIVH 75

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           +     + + A+  P ++ HL   F PGPLTL+L      D+  + TA L+T   RVP  
Sbjct: 76  LRRRDQIGQVAARVPSVAQHLLDAFAPGPLTLILP--KHEDLPSVVTAGLETVGVRVPRL 133

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+  +E    P+  PSANRSG+ S T+ + +    +   I  I+ GG +  G+EST+V
Sbjct: 134 PLTQSFLEACDTPVPAPSANRSGRPSPTSWEAV-EHDLAGRIDCILQGGRTDAGVESTVV 192

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +   +    +LRPG + +E+L+RA+        D    P+SPG    HYAP +QVRL   
Sbjct: 193 DCTTDPAT-VLRPGAVSVESLRRALGAVQVPSSDADEAPRSPGTRHRHYAPSAQVRLVE- 250

Query: 242 HVNPREALI----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
             +P EA+      +  + +    +A+ ++ + ++  +K  A +LF+  +  D++    I
Sbjct: 251 --DPSEAVSGDRHAYVGLDVPPHPDALGAVYVEES--VKAYAHDLFHIFRTCDENEVEVI 306

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
              ++P +GLG A+N+RL RAAA
Sbjct: 307 YAQTVPPNGLGRALNDRLRRAAA 329


>gi|148269220|ref|YP_001243680.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga petrophila RKU-1]
 gi|147734764|gb|ABQ46104.1| translation factor SUA5 [Thermotoga petrophila RKU-1]
          Length = 335

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 168/324 (51%), Gaps = 18/324 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  I  PTETVYG+  D+ N  A R+++E+K RP  NPLI H+   
Sbjct: 13  DEEVLKEAVELLRNGEVIIFPTETVYGIGADAYNEEACRKIFELKGRPTDNPLIVHIHSF 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A      L   K FWPGPLT++L   S   I  + TA L T   R+P      K
Sbjct: 73  DQLEEIAEGYEAHLDFLKKFWPGPLTVILRKKSEK-IPLVVTAGLSTVAVRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE +G+P+A PSAN SG+ S TNV+H++   + K + LIID G +  GLESTIV++  E
Sbjct: 132 LIELFGNPIAAPSANLSGRPSATNVQHVIEDFMGK-VKLIIDAGNTPFGLESTIVDLTKE 190

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDE-------TSTPQSPGMLKSHYAPRSQVRLR 239
           K V +LRPG +E+E L+       E  V +          P +PGM   HYAP   + L 
Sbjct: 191 KPV-LLRPGPVEVERLRELFP---ELVVPDFVRKGNFKGRPLAPGMKYRHYAPSKPLILV 246

Query: 240 AIHVNPREALIRFGN-VPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGAS 295
                  E L ++ N V I   E   +  ++   G LK     A N+F+ ++ A+  G  
Sbjct: 247 EDLTKMEEVLKKYPNHVVICVDERKELYDDIIVVGSLKNPYSIAQNIFSVLREAEKRGKE 306

Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319
            I        G+  A+ NRL +AA
Sbjct: 307 YIIVEGFEERGILFAVMNRLRKAA 330


>gi|325679591|ref|ZP_08159166.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 8]
 gi|324108621|gb|EGC02862.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 8]
          Length = 338

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 183/336 (54%), Gaps = 30/336 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  N+++KA + +  G  + +PTETVYGLA ++ N  A+R+++  K RPA NPLI HVS 
Sbjct: 9   SSENSIKKASDLIRTGEVVGMPTETVYGLAANAFNENAVRKIFAAKGRPADNPLIVHVSS 68

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFT 124
              +    +  P L+   A+LFWPGPLT++   +  +D+ P+ T+  L T   R+P   T
Sbjct: 69  FEEISPLVTEIPVLARKCAELFWPGPLTMI---MPKSDMIPMVTSGGLDTVGIRMPSNNT 125

Query: 125 -KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +  I+    P+A PSAN SG  S T   H+L + +   IP IIDGG   +G+EST+++ 
Sbjct: 126 ARAFIKECSCPIAAPSANLSGSPSPTTASHVL-NDMKGRIPAIIDGGACGVGVESTVISF 184

Query: 184 QCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           + +  +R+LRPG +  E L+       I   +   +DE +   SPGM   HYAP+++V +
Sbjct: 185 EGD-GIRLLRPGFVSAEDLREVTENVLIDKGVLEMLDENARVSSPGMKYKHYAPKAEVSI 243

Query: 239 RA-----------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                         + +  + L+ F       +EN ++ L  S     +E A  LF+ ++
Sbjct: 244 VCGNSGEFNGFCMKNASADDVLMVFDESDAAGLENRLLVLGKSD----EEQAQRLFDALR 299

Query: 288 IADDSGASSIAFSSIPNH-GLGIAINNRLERAAAPR 322
             D+ GA  + ++  PN  G+G+A+ NRL RAAA R
Sbjct: 300 ELDEMGAKKV-YARCPNKTGVGLAVYNRLLRAAAFR 334


>gi|251799799|ref|YP_003014530.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2]
 gi|247547425|gb|ACT04444.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2]
          Length = 356

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 28/333 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +A PTETVYGL  D+RN TA+  +++ K RP+ NPLI H++D + + 
Sbjct: 22  LEEAASLLRDGELVAFPTETVYGLGADARNTTAVEGIFKAKGRPSDNPLIVHIADENQLA 81

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129
           +     P L+  L K  WPGPLT+VL  + T  + PL TA L T   R+P       LI 
Sbjct: 82  ELVLPYPELAGRLMKELWPGPLTIVLP-VRTGAVSPLVTAGLTTVGIRMPDHPAALALIR 140

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSANRSG+ S T   H+L   +  +I  I+DGG + +GLEST++ +     +
Sbjct: 141 QSGCPVAAPSANRSGRPSPTLAAHVL-EDLAGKISGIVDGGATGVGLESTVIELPDSNTI 199

Query: 190 RILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
           RILRPGG+  E L+ A     I        D T  P+SPGM  +HYAP   +R+  +   
Sbjct: 200 RILRPGGITAEQLRSAAPEAVIDAPAAANPDVTEAPRSPGMKYAHYAPEGDLRI--VLGE 257

Query: 245 PREALI----RFGNVPIKNIENAIISLN-----------LSKTGKL--KEAAFNLFNYMK 287
           P +A+     +       +++  +++ +           LS   +L  ++AA NL+  ++
Sbjct: 258 PAKAVSYIQEQLSLSTTTSMKTGVLTFDERAAAYDADLILSYGSELHPEQAAHNLYAALR 317

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             D  G   I        G+G+A+ NRL +AA 
Sbjct: 318 RFDSEGIQLIWAEGCSEEGIGLALMNRLAKAAG 350


>gi|294507611|ref|YP_003571669.1| SUA5 protein [Salinibacter ruber M8]
 gi|294343940|emb|CBH24718.1| SUA5 protein [Salinibacter ruber M8]
          Length = 412

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 178/323 (55%), Gaps = 15/323 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ T + +  +A + L  G  +A PTETVYGL  D+  P A+RR++E K RPA NPLI H
Sbjct: 98  VATTRTTSPTEAADRLRRGELVAFPTETVYGLGADAFQPDAVRRIFEAKGRPADNPLIVH 157

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           +     + + A+  P ++ HL   F PGPLTL+L      D+  + TA L+T   RVP  
Sbjct: 158 LRRRDQIGQVAARVPSVAQHLLDAFAPGPLTLILP--KHEDLPSVVTAGLETVGVRVPRL 215

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+  +E    P+  PSANRSG+ S T+ + +    +   I  I+ GG +  G+EST+V
Sbjct: 216 PLTQSFLEACDTPVPAPSANRSGRPSPTSWEAV-EHDLAGRIDCILQGGRTDAGVESTVV 274

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +   +    +LRPG + +E+L+RA+        D    P+SPG    HYAP +QVRL   
Sbjct: 275 DCTTDPAT-VLRPGAVSVESLRRALGAVQVPSSDADEAPRSPGTRHRHYAPSAQVRLVE- 332

Query: 242 HVNPREALI----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
             +P EA+      +  + +    +A+ ++ + ++  +K  A +LF+  +  D++    I
Sbjct: 333 --DPSEAVSGDRHAYVGLDVPPHPDALGAVYVEES--VKAYAHDLFHIFRTCDENEVEVI 388

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
              ++P +GLG A+N+RL RAAA
Sbjct: 389 YAQTVPPNGLGRALNDRLRRAAA 411


>gi|242399386|ref|YP_002994810.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739]
 gi|242265779|gb|ACS90461.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739]
          Length = 341

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 25/334 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   ++ A  F+     +A PTETVYGL  D+ N  A+R++++ K RP  NPLI H+++
Sbjct: 11  VDWKKIKVAARFIKESKLVAFPTETVYGLGADALNEDAVRKIFQAKGRPPDNPLIIHIAN 70

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
              + + A   P +   LA+ FWPGPLTLVL      ++  ++T  L+T   R+P     
Sbjct: 71  FEQIYELAREVPETAKILAQRFWPGPLTLVLP--KKDEVPYVTTGGLETVAIRMPDHEIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI++   P+A PSAN SG+ S T  +H++     K I  IIDGG +KIG+EST+V++ 
Sbjct: 129 LALIQSSDRPIAAPSANISGKPSPTLAEHVVDDFYGK-IECIIDGGETKIGVESTVVDLT 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAI 241
               + +LRPGGL +E +K+ I  V +   V        ++PGM   HYAP +QV    +
Sbjct: 188 THPPM-LLRPGGLPLEEIKKVIGKVNVHPAVKGKPIKLAKAPGMKYKHYAPEAQV---IV 243

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA-------------AFNLFNYMKI 288
               RE + +     IK  +   I + +  TG   EA             A NLF  ++ 
Sbjct: 244 IEGEREQVTKKIKELIKEYKKQKIRVGVMATGDFYEADAYFNIGENEEEIARNLFKALRE 303

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            D SG + I    I   GLG+A+ NRL++AA  R
Sbjct: 304 LDKSGVNVILAEGIEERGLGLAVMNRLKKAAGYR 337


>gi|212224235|ref|YP_002307471.1| Hypothetical translation factor [Thermococcus onnurineus NA1]
 gi|212009192|gb|ACJ16574.1| Hypothetical translation factor [Thermococcus onnurineus NA1]
          Length = 339

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 172/332 (51%), Gaps = 25/332 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++ A +F+  G  +A PTETVYGL  D+ N  A RR++E K RPA NPLI H++D 
Sbjct: 12  DGRKIKIAAKFILEGKLVAFPTETVYGLGADALNEEAARRIFEAKGRPADNPLIVHIADF 71

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
             +KK A   P     LA+ FWPGPLT+VL      ++  ++T  L T   R+P      
Sbjct: 72  DDLKKLAREIPDEARLLAEKFWPGPLTVVLP--KKEEVPTVTTGGLDTVAVRMPAHPIAL 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     P+A PSAN SG+ S T  +H++     K I  IIDGG +KIG+EST+V++  E
Sbjct: 130 ALIRASTPIAAPSANISGKPSPTLAEHVIDDFYGK-IECIIDGGETKIGVESTVVDLSGE 188

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDE--TSTPQSPGMLKSHYAPRSQV------- 236
           K   +LRPGGL +E +++ I  VE+   V        +SPGM   HY+P +QV       
Sbjct: 189 KPT-LLRPGGLPLEEIEKVIGEVEIHPAVRGKLVDVARSPGMKYKHYSPNAQVIVVEGPR 247

Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIE-NAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                ++  +    R+  +R G +  +  + +    L  S+    +E A NLF  ++  D
Sbjct: 248 ENVRKKIEELVKEYRKKGLRVGVMATEQYDADEFFHLGTSE----EEVARNLFKALRELD 303

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                 I    I   GLG A+ NRL +AA  R
Sbjct: 304 KRRVDIIIAEGIEERGLGFAVMNRLRKAAGYR 335


>gi|325291370|ref|YP_004267551.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271]
 gi|324966771|gb|ADY57550.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271]
          Length = 368

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 178/348 (51%), Gaps = 31/348 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q   ++  N L++A + + AG  +A PTETVYGL  D+ NP A   ++++K RPA NPLI
Sbjct: 19  QEQWLSLENELKEAAQLIKAGNLVAFPTETVYGLGADALNPRACAEIFKVKGRPADNPLI 78

Query: 62  CHVSDISMVKKHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV+D+   ++  S       + A  FWPGPLT+VL       I  + +  LKT  FR+P
Sbjct: 79  LHVADLEEARRLTSFWNDKAEICAGAFWPGPLTMVLP--KAEFIPDVISGGLKTVAFRMP 136

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI   G PLA PSAN SG+ S T+ +H+    +   IPL+ID G   IGLEST
Sbjct: 137 DHPVALSLIRLSGCPLAAPSANLSGKPSPTDGEHVW-QDLQGRIPLMIDAGKCAIGLEST 195

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRS 234
           ++++  E  V ILRPGG+  E L+  +  VE++  + E +T    P++PGM   HYAP  
Sbjct: 196 VLDLSEEIPV-ILRPGGITREQLEEVLGKVEVDPFLTEMNTENIVPKAPGMKYRHYAPEG 254

Query: 235 QVRLRA-----IHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLK---------- 276
           +V L +     +    RE L  +   P K    +      L   +  KL+          
Sbjct: 255 EVHLLSGDGSEVLQEIREGLAEYAATPKKALLCLRETEEMLQDEEKKKLELIFVMGARTN 314

Query: 277 --EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             +AA  L+  +++ D      I    +P  G+G+A  NRL +AA  R
Sbjct: 315 PGKAARRLYEGLRLCDRQNMEMIFVEGMPAEGIGLAFMNRLRKAAGKR 362


>gi|315649887|ref|ZP_07902969.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453]
 gi|315274686|gb|EFU38068.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453]
          Length = 385

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 175/336 (52%), Gaps = 31/336 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L  G  +A PTETVYGL  D+ N  A+ R++  K RPA NPLI H+S+++ ++
Sbjct: 47  LQEAGLVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPADNPLIVHISELAQLE 106

Query: 72  ---KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
              +H  V+     L   FWPGPL+LVL +     + P  TA L T   R+P       L
Sbjct: 107 GLVQH--VNETERALMDSFWPGPLSLVLPVKRDA-VSPRVTAGLDTVAVRMPDHSVALAL 163

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSANRSG+ S T   H+L + +   I  ++DGG + +G+EST+V V  + 
Sbjct: 164 ISAAGRPLAAPSANRSGRPSPTLASHVL-ADLAGYIDGVLDGGPAGVGVESTVVQVGEDG 222

Query: 188 KVRILRPGGLEIETLKR-AISVELEYCVD------ETSTPQSPGMLKSHYAPRSQVRL-- 238
            V +LRPGG+  E L   A SV L+  +       E   P+SPGM  +HYAP+  + +  
Sbjct: 223 AVTVLRPGGVTAEQLAAVAASVRLDPALQRAAGEAEGPAPRSPGMKYTHYAPKGAMCVVQ 282

Query: 239 --RAIHVNPREALIRFGNVPIKNIEN------------AIISLNLSKTGKLKEAAFNLFN 284
             RA  V+ R A           +              A ++++L      +EAA  L+ 
Sbjct: 283 GPRADAVSARIAAELEAAARRGEVTGVLSFDEHIGHYRADVAVSLGSLAAPEEAARRLYA 342

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  DD GA+ I   + P+ G+G A+ NRL +AA 
Sbjct: 343 GLRHFDDEGATFILAEACPDRGVGAAVMNRLLKAAG 378


>gi|296109437|ref|YP_003616386.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME]
 gi|295434251|gb|ADG13422.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME]
          Length = 313

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 180/329 (54%), Gaps = 33/329 (10%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T+ N ++KA E +  G  +A PTETVYGL  D+ N  A+ +++E+K+RP ++P+I 
Sbjct: 2   ILKATEEN-IKKAAEVIRKGGLVAFPTETVYGLGADALNKEAVAKIFEVKQRPLIDPVIV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121
           H+S    ++K A    L+  LAK FWPGPLT+V   L   ++ P + TA L     R+P 
Sbjct: 61  HISKFEDLEKLAYPTELAYKLAKAFWPGPLTMV---LPKKEVVPSIVTAGLDFVAIRMPA 117

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                KLIE     +A PSAN   ++S T  +H+    +  ++ +I+DGG   +G+ESTI
Sbjct: 118 HPVALKLIEESKTFIAAPSANLFSKLSPTRAEHVY-EQLGDKVDIILDGGKCDVGVESTI 176

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +++  E    ILR GGL++E +++ I  E++    E    ++PGMLK HY+P + ++   
Sbjct: 177 IDLTTEPPT-ILRLGGLDVEAIEKVIG-EVK-ITKENKKIKAPGMLKKHYSPTTPLK--- 230

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLN-----------LSKTGKLKEAAFNLFNYMKIA 289
           I   P+         PI N+   +++             LS+ G L+EAA NL++ +   
Sbjct: 231 IMKEPK---------PIPNLRCGLLAFKEPREGFEVVEILSRKGDLREAAANLYDSLHRL 281

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERA 318
           D      I   ++P  GLG AI +RL +A
Sbjct: 282 DKQNLDIIIAEAVPEVGLGRAIMDRLRKA 310


>gi|225164315|ref|ZP_03726583.1| SUA5/YciO/YrdC/YwlC family protein [Opitutaceae bacterium TAV2]
 gi|224801077|gb|EEG19405.1| SUA5/YciO/YrdC/YwlC family protein [Opitutaceae bacterium TAV2]
          Length = 373

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 183/347 (52%), Gaps = 33/347 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I   T +N LR+    L  G  +A+P+ETVYGLA D+ N  A   ++  K+RP  +PLI
Sbjct: 34  RIYRPTPAN-LRRLASALARGDLVAVPSETVYGLAADALNVAACEAIFAAKRRPHHDPLI 92

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            H++ +  + + A   P +L LAK FWPGPLTLVL       +  L TA L +   R+P 
Sbjct: 93  VHIASLRQLHEIAMPSPEALLLAKAFWPGPLTLVLP--KRPHVPDLVTAGLPSVAVRMPA 150

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               +K+I      LA PSAN  G +S T  +H+   ++   I  I+DGG  K+G+ESTI
Sbjct: 151 HPLFQKIIRLSQRALAAPSANPFGYVSPTTAQHV-KDNLQNRIKHILDGGPCKVGVESTI 209

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCV------------DETSTPQSPGML 226
           ++++      +LR GGL +E ++R +   V L + V              T    +PGML
Sbjct: 210 IDLREPLHPVLLRAGGLPVEEIQRVLQRPVSLAHHVPPSPPPPLSLRSHATQGQTAPGML 269

Query: 227 KSHYAPRSQVRLRA-------IHVNPREALIRFGNVPIKNIENAIIS--LNLSKTGKLKE 277
             HY+PR+ V L          ++ P EAL+     P KN+ + +I     LSKTG L E
Sbjct: 270 DHHYSPRTPVALLTNLTPDFIKNLPPDEALLCLQ--PPKNLRHRMIHNLFYLSKTGDLNE 327

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAAAPR 322
           AA  LF+ +++ D+ G   I  + +P    GL  AI +RL RAAA R
Sbjct: 328 AARQLFDRLRMLDNGGWKKI-HAELPGQKKGLAPAIRDRLTRAAAKR 373


>gi|124009997|ref|ZP_01694660.1| translation factor SUA5 [Microscilla marina ATCC 23134]
 gi|123983955|gb|EAY24343.1| translation factor SUA5 [Microscilla marina ATCC 23134]
          Length = 320

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 172/315 (54%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +AIPTETVYGLA ++ +  A+ R++E K RP  +PLI H   I  V+
Sbjct: 9   LTQASILLTQGKLVAIPTETVYGLAANAFDKKAVTRIFEAKNRPTFDPLIVHTHSIEQVQ 68

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLI 128
           +     P  +  LAK FWPG LT+   LL   D+ P L TA L T   R+P    T +L+
Sbjct: 69  QFTKNIPEKAKKLAKQFWPGSLTI---LLEKNDLIPDLVTAGLSTVAVRIPNHPLTLELL 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    PLA PSAN  G IS T   H+  + +  ++  IIDGG  ++G+ESTIV V+   +
Sbjct: 126 KQLDFPLAAPSANPFGYISPTTAGHV-EAQLKNKVSYIIDGGPCQVGIESTIVEVK-NNQ 183

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-HVNPRE 247
             I R GG+ +E ++ A   ++E     +S P++ GMLKSHYAP+ ++ +  I  + P+ 
Sbjct: 184 TTIYRLGGISVENIEAATG-KVEEVRHSSSNPKASGMLKSHYAPQKKMIIGDIAALLPQY 242

Query: 248 ALIRFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
              + G +  +     +     + LS  G+L +AA  LF  M+  D+     I    +P 
Sbjct: 243 PCDKVGILSFRKTYEQVPKNQQVVLSAEGELAKAAQGLFAGMRYLDNQPVEIILAELMPE 302

Query: 305 HGLGIAINNRLERAA 319
            GLG AIN+R+ RAA
Sbjct: 303 KGLGRAINDRIRRAA 317


>gi|302532178|ref|ZP_07284520.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C]
 gi|302441073|gb|EFL12889.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C]
          Length = 324

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/330 (35%), Positives = 170/330 (51%), Gaps = 24/330 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T +  +  A   L AG  +A+PTETVYGL  D+ N  A+ R++E+K RP+ +PLI H+  
Sbjct: 3   TRTTDIAAAAGVLRAGGLVALPTETVYGLGADAENADAVNRIFEVKGRPSSHPLIVHIGG 62

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
              +      V P +  LA+ FWPGPLTLVL       +   +T  L+T   RVP     
Sbjct: 63  AEQLDDWVEEVSPTARLLAERFWPGPLTLVLRRGRRVPLE--ATGGLETVAVRVPDHPVA 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +L+  +G  +  PSANR G +S T   H+  + + + + L++DGG  ++G+ESTIV+V 
Sbjct: 121 LELLAAFGGGVTAPSANRFGSVSPTTADHV-GAELGEAVDLVLDGGPCQVGVESTIVDVT 179

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            +    ILRPGG+  E L+  +   L   V  TS  + PG   SHYAPR++V L    V 
Sbjct: 180 GDVP-SILRPGGVTREDLEAVLGFPL--AVPSTSQVRVPGQHPSHYAPRARVVL----VE 232

Query: 245 P----------REALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDS 292
           P          +E   R G +  +  + A +  +  +   G     A  L+ +++  DD 
Sbjct: 233 PETVVAEAERAQEQGHRVGLLLPRPFDGADVKAHAVVEVPGSPAAYARGLYGFLRELDDR 292

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           G   I  S     GLG+AI NRL RAA PR
Sbjct: 293 GCDLIVASLPAEEGLGLAIANRLRRAAGPR 322


>gi|126664215|ref|ZP_01735207.1| translation factor, SUA5-family protein [Flavobacteria bacterium
           BAL38]
 gi|126623747|gb|EAZ94443.1| translation factor, SUA5-family protein [Flavobacteria bacterium
           BAL38]
          Length = 317

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/321 (35%), Positives = 167/321 (52%), Gaps = 18/321 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L +A   L+    I  PTETVYGLA ++ +  AI+++YE+KKRP+ NPLI H+    
Sbjct: 3   STNLDQAVALLNKDQIIGFPTETVYGLAGNAFSDVAIKKIYEVKKRPSFNPLIVHIKSFD 62

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +   A+  P   H LA  FWPGPLTL+L    T  I  L TANL T   R+P      +
Sbjct: 63  FLDTIATEIPEKAHLLANAFWPGPLTLLLKKQPT--ISNLVTANLDTVAVRIPNHPVALE 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+     PL  PSAN   +IS T  +H+ +     EI +++DGG    G+ESTIV  +  
Sbjct: 121 LLHQLDFPLVAPSANPFTRISPTKAEHV-AQYFENEIDMVLDGGTCTAGVESTIVGFES- 178

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHV-- 243
            KV + R G L +E +++ +   +         P++PGM   HY+P+++  L R +    
Sbjct: 179 NKVIVYRLGALSLEAIEKVVG-PVTIINKNKKNPKAPGMFLKHYSPKTEFILTRNLQSEI 237

Query: 244 ----NPREALIRFGNV-PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
               + +  L+ F  + P   ++N  +   LSK   L EAA NL+  +   D      I 
Sbjct: 238 DWFQDKKVGLLLFNTIQPNFELKNQFV---LSKDSNLNEAAANLYEALHELDKLNLDLII 294

Query: 299 FSSIPNHGLGIAINNRLERAA 319
               P +GLGI IN+RLERA+
Sbjct: 295 AERFPEYGLGITINDRLERAS 315


>gi|167750774|ref|ZP_02422901.1| hypothetical protein EUBSIR_01752 [Eubacterium siraeum DSM 15702]
 gi|167656209|gb|EDS00339.1| hypothetical protein EUBSIR_01752 [Eubacterium siraeum DSM 15702]
          Length = 337

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/325 (37%), Positives = 167/325 (51%), Gaps = 22/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A E +  G  +AIPTETVYGLA D+ NP A  ++++ K RP  NPLI H+ D+ M+K
Sbjct: 13  LCEAAELIKKGEVVAIPTETVYGLAADAYNPDACAKIFKAKGRPQDNPLIIHICDLDMLK 72

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLI 128
                + PL+L LA+ FW G LT++       DI P +T+  L T   R+P    T  LI
Sbjct: 73  NSVKEIPPLALTLAEHFWSGSLTMI---FPKKDIVPDTTSGGLDTVAVRMPDNEDTLNLI 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV-NVQCEK 187
           +  G PLA PSAN SG  S T  +H+  + +   IPLIIDGG  K G+EST++       
Sbjct: 130 KMCGVPLAAPSANLSGSPSPTTAQHVY-ADMNGRIPLIIDGGECKNGVESTVICFTDGGT 188

Query: 188 KVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            +++LRPG +  E L R    E +  V    DE     SPG+   HY+PR+ + +  I  
Sbjct: 189 GIKVLRPGVITAEMLSRFAKTETDKNVFAKPDENEKVISPGVKYKHYSPRADITI--IET 246

Query: 244 NPREALIRFGNVP--------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           +  E L  F N          I   E  I    +S     +E A NLF  ++  D+ GA 
Sbjct: 247 DSDEKLAEFLNSKNDGGTYGVIFGSEKGIEVPTISYGSTAQEQAHNLFAVLRKTDELGAK 306

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
                     G+G A+ NRL RAAA
Sbjct: 307 RAYVRCPEKTGVGTAVYNRLLRAAA 331


>gi|256003268|ref|ZP_05428260.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM
           2360]
 gi|255992959|gb|EEU03049.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM
           2360]
 gi|316939243|gb|ADU73277.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM
           1313]
          Length = 351

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 179/335 (53%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  ++ A E L  G  +A PTETVYGL  D+ +  A+++++E K RP+ NPLI H++  
Sbjct: 14  DNEKIKYAAEVLRGGGLVAFPTETVYGLGADALDENAVKKIFEAKGRPSDNPLIVHIAGK 73

Query: 68  SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V    A+V P +  L   FWPGPLTLVL+   +  I  + TA L T   R P      
Sbjct: 74  EDVYGLAANVPPKAQILMDRFWPGPLTLVLE--KSDKIPSVITAGLSTVGLRAPSHPIAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T  KH++   +   + +IIDGG + IG+EST+++V  
Sbjct: 132 ALIREAGIPIAAPSANLSGRPSPTVPKHVI-DDLYDRVDVIIDGGNANIGVESTVLDVTA 190

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETS----TPQSPGMLKSHYAPRSQV---- 236
           +  V ILRPGG+  E LK  + +V ++  + +       P++PGM  +HY+P++ V    
Sbjct: 191 DVPV-ILRPGGVSFEQLKDVLKNVAMDPSLMKKPAGDFVPKAPGMKYTHYSPKADVIVVE 249

Query: 237 ---RLRAIHVNPREALIRFGNVPI--------KNIENAIISLNLSKTGKLKEAAFNLFNY 285
                 A  +N   A  +  N+P+        K    ++ S+ L    + +  A NLF  
Sbjct: 250 GEPEKVAEKINSLIAEYQSKNIPVGVLATEQTKEFYKSVPSITLGDRLEPETIAANLFKA 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +  DD G   I   +I N G+G+A+ NR+++AA 
Sbjct: 310 FRDFDDIGIKVIFAEAIDNQGIGLAVMNRMKKAAG 344


>gi|125975078|ref|YP_001038988.1| translation factor SUA5 [Clostridium thermocellum ATCC 27405]
 gi|281418504|ref|ZP_06249523.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum JW20]
 gi|125715303|gb|ABN53795.1| translation factor SUA5 [Clostridium thermocellum ATCC 27405]
 gi|281407588|gb|EFB37847.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum JW20]
          Length = 351

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 179/335 (53%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  ++ A E L  G  +A PTETVYGL  D+ +  A+++++E K RP+ NPLI H++  
Sbjct: 14  DNEKIKYAAEVLRGGGLVAFPTETVYGLGADALDENAVKKIFEAKGRPSDNPLIVHIAGK 73

Query: 68  SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V    A+V P +  L   FWPGPLTLVL+   +  I  + TA L T   R P      
Sbjct: 74  EDVYGLAANVPPKAQILMDRFWPGPLTLVLE--KSDKIPSVITAGLSTVGLRAPSHPIAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T  KH++   +   + +IIDGG + IG+EST+++V  
Sbjct: 132 ALIREAGIPIAAPSANLSGRPSPTVPKHVI-DDLYGRVDVIIDGGNANIGVESTVLDVTA 190

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETS----TPQSPGMLKSHYAPRSQV---- 236
           +  V ILRPGG+  E LK  + +V ++  + +       P++PGM  +HY+P++ V    
Sbjct: 191 DVPV-ILRPGGVSFEQLKDVLKNVTMDPSLMKKPAGDFVPKAPGMKYTHYSPKADVIVVE 249

Query: 237 ---RLRAIHVNPREALIRFGNVPI--------KNIENAIISLNLSKTGKLKEAAFNLFNY 285
                 A  +N   A  +  N+P+        K    ++ S+ L    + +  A NLF  
Sbjct: 250 GEPEKVAEKINSLIAEYQSKNIPVGVLATEQTKEFYKSVPSITLGDRLEPETIAANLFKA 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +  DD G   I   +I N G+G+A+ NR+++AA 
Sbjct: 310 FRDFDDIGIKVIFAEAIDNQGIGLAVMNRMKKAAG 344


>gi|289435803|ref|YP_003465675.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172047|emb|CBH28593.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 345

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 183/330 (55%), Gaps = 19/330 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E L  G  +A PTETVYGL  D+ N  AI+++YE K RP+ NPLI H++    +  
Sbjct: 19  QQAAELLRNGECVAFPTETVYGLGADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDA 78

Query: 73  H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             AS    ++ L + FWPGPLT++L L   +    +S A L T   R+P    +  LI+ 
Sbjct: 79  FVASYPQKAIKLMEKFWPGPLTVILPLKKDSLASNVS-AGLSTVGVRMPEHPVSLALIKE 137

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+A PSANRSG+ S T+  H++   +  ++  IIDGG + +GLEST+++   E  V 
Sbjct: 138 AGIPVAAPSANRSGKPSPTSASHVI-EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV- 195

Query: 191 ILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL----RAI--- 241
           ILRPGG+  E +++ I SVEL      ET  P++PGM  +HYAP++ V L    +A    
Sbjct: 196 ILRPGGITKEQIEQVIGSVELANNDTKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQK 255

Query: 242 HVNPREAL-IRFGNVPIKNIENAIISLNLSKTG----KLKEAAFNLFNYMKIADDSGASS 296
            +N  EA   + G +  K + + + +  +++T      ++E A  L+  ++  D +    
Sbjct: 256 EINKVEAAHKKLGILATKELLDGLTTNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDI 315

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           I     P   LG A+ NRLE+AA  R  S+
Sbjct: 316 IFAEVYPETELGAAVMNRLEKAAGNRRISE 345


>gi|239828601|ref|YP_002951225.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. WCH70]
 gi|239808894|gb|ACS25959.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. WCH70]
          Length = 348

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/325 (36%), Positives = 178/325 (54%), Gaps = 20/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L +G  +A PTETVYGL  ++++  A+ +++  K RP+ NPLI H++ +  ++
Sbjct: 21  VKEAAQLLKSGEVVAFPTETVYGLGANAKDAKAVEKIFAAKGRPSDNPLIVHIAHLKQLE 80

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  S  P   H L K FWPGPLTLVL         P+ TA L T   R+P       LIE
Sbjct: 81  EMVSAIPDVAHTLIKRFWPGPLTLVLPKKEGVISDPV-TAGLPTVAVRMPAHPVALALIE 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN SG+ S T   H+  + +   I  I+DGG + IG+EST+++  C  KV
Sbjct: 140 ASGLPLAAPSANISGRPSPTTAAHVF-ADLNGRIAGIVDGGETGIGVESTVLD--CTTKV 196

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------R 239
             ILRPGG+  E L++ I +V ++  + DE  TP+SPGM  +HYAP+S + +        
Sbjct: 197 PTILRPGGVTKEALEKVIGNVFVDSALTDERQTPKSPGMKYTHYAPKSPMAIVQGSPAFL 256

Query: 240 AIHVNPREALIRFGNVPI----KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
              VN +  L +   V      ++  +A + L       L   A +L++ ++  D++   
Sbjct: 257 QTLVNKQRTLGKKVGVLTTEENRSFYDADVVLACGSRHDLHTVASHLYDTLRKFDETDVD 316

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S P  G+G AI NRL++AA 
Sbjct: 317 FIYSESFPTEGIGEAIMNRLKKAAG 341


>gi|315641823|ref|ZP_07896827.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus italicus DSM
           15952]
 gi|315482498|gb|EFU73037.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus italicus DSM
           15952]
          Length = 346

 Score =  169 bits (428), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 182/340 (53%), Gaps = 27/340 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  I+ ++ +++A  ++  G  +A PTETVYGL   + NP A++++Y++K RP+ NPL
Sbjct: 1   MEIQKIS-TDEVKQAAHYIQQGELVAFPTETVYGLGASALNPQAVKKVYQVKGRPSDNPL 59

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     PL+  L + FWPGPLT++L +   T    + T  L T  FR+
Sbjct: 60  IVHVTSFEQVKEYIQESHPLAEVLVQTFWPGPLTIILPIKPNT-FDTVVTGGLATVAFRM 118

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T +LI   G PL  PSAN SG  S T  +H++       I  ++DGG +KIG+ES
Sbjct: 119 PDQALTLELIRQAGVPLVGPSANLSGHPSPTTAEHVI-HDFEHSIKGVLDGGPTKIGVES 177

Query: 179 TIVNV-QCEKKVRILRPGGLEIETLKRA----ISVELEYCVDETSTPQSPGMLKSHYAPR 233
           T++++    K   ILRPG +  E L++A    ++V+  + +     P++PGM   HYAP 
Sbjct: 178 TVLDLSDPNKPPMILRPGAVTKEMLEQACHTPVAVD-SHLLRADEAPKAPGMKYKHYAPV 236

Query: 234 SQVRLRAIHVNPREALIRF------------GNVPIKNIENAIISLNLSKTGKLKEAAFN 281
             V++  +H    E +  +            G    + +     ++ +     ++ A   
Sbjct: 237 VPVQM--VHEQEWEQVASYLAHHPIRAGILAGPTAAEVVRGEAAAVYMYADDSVQAATQG 294

Query: 282 LFNYMKIADDS--GASSIAFSSIPNHGLGIAINNRLERAA 319
           LF+ ++  D++  G   +  ++ P  GLG+A  NRL++AA
Sbjct: 295 LFSGLRALDETKAGLDCLYVATYPEDGLGVAYMNRLKKAA 334


>gi|81428744|ref|YP_395744.1| Sua5 family translation factor [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610386|emb|CAI55436.1| Putative translation factor, SUA5 family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 342

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 176/337 (52%), Gaps = 25/337 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N + +A   L+AG  ++ PTETVYGL  D+ NP A++++Y  K RP+ NPLI HV+ +  
Sbjct: 9   NQIEQAAAALNAGELVSFPTETVYGLGADATNPAAVKKVYAAKGRPSDNPLIVHVASVET 68

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           V+ +A + +P    L K FWPG LT++L L        + T  LKTA FR+P    T  L
Sbjct: 69  VEHYAVTSNPAFGQLVKAFWPGSLTIILPLKHGA-FDAVVTGGLKTAAFRMPDNQVTLSL 127

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+  PSAN SG+ S T   H+L   +  +I  +ID G + +GLEST++++    
Sbjct: 128 IKAAGVPIVGPSANTSGKPSPTLADHVL-HDLTGKIAGVIDDGPTGVGLESTVIDLSVAT 186

Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            V ILRPG +  E ++R I   +  ++ V    TP++PGM   HYAP +QV + A   NP
Sbjct: 187 PV-ILRPGVVTQEAIERVIGPIMTNKHKVGAAETPKAPGMKYKHYAPNAQVYIVA---NP 242

Query: 246 ----------REALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIAD- 290
                      +  + FG + +  I      +       L E    A+ +LF  ++  D 
Sbjct: 243 DDFDAAIDWASQQAVPFGVMAVDTILEKQAKVRFKDQFSLGESVVTASQHLFEGLRYFDL 302

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           +     I        G+G+A  NRLE++A  +  S++
Sbjct: 303 NPEVKLILVQGFAKEGVGLAYMNRLEKSAGQKYFSKQ 339


>gi|229826322|ref|ZP_04452391.1| hypothetical protein GCWU000182_01694 [Abiotrophia defectiva ATCC
           49176]
 gi|229789192|gb|EEP25306.1| hypothetical protein GCWU000182_01694 [Abiotrophia defectiva ATCC
           49176]
          Length = 349

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 172/335 (51%), Gaps = 33/335 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L KA E +  G  +A PTETVYGL  +  +  A+ ++YE K RP+ NPLI H+S+   +
Sbjct: 17  GLYKAAEIIKNGGLVAFPTETVYGLGANGLDENAVPKIYEAKGRPSDNPLILHISEFDEI 76

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKL 127
           K      P ++  LA  FWPGPLT+V      +DI P  +T  L++   R+P     ++L
Sbjct: 77  KNIVKEIPDVAFVLADEFWPGPLTMV---FKKSDIVPYRTTGGLESVAVRMPSNKIAREL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN SG+ S T   H+L   +  +I ++IDGG   IGLESTIV+V  E 
Sbjct: 134 IKIAGVPVAAPSANSSGRPSPTKADHVL-CDLDGKIDMVIDGGTVDIGLESTIVDVTGEV 192

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRAI 241
            V ILRPG +  E L  AI  V+++  V     D+   P++PGM   HYAP+ ++    I
Sbjct: 193 PV-ILRPGFITEEMLSEAIGRVDIDEAVKSLTLDKNLKPKAPGMKYRHYAPQGKM---TI 248

Query: 242 HVNPREALIRFGNVPIKNIEN----------------AIISLNLSKTGKLKEAAFNLFNY 285
           +    E +++  N      E                 A I +++      +  A NLF+ 
Sbjct: 249 YKGKPEKVVKIINEETAKSEGKKTAVLATDETKRYYKADIVISVGSREDCESIAHNLFDT 308

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD GA  I         LG AI NRL ++A 
Sbjct: 309 LRSFDDMGAEIIFSEGFDESRLGFAIMNRLHKSAG 343


>gi|227544506|ref|ZP_03974555.1| translation factor SUA5 [Lactobacillus reuteri CF48-3A]
 gi|300909306|ref|ZP_07126767.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri SD2112]
 gi|227185529|gb|EEI65600.1| translation factor SUA5 [Lactobacillus reuteri CF48-3A]
 gi|300893171|gb|EFK86530.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri SD2112]
          Length = 354

 Score =  168 bits (426), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 176/323 (54%), Gaps = 19/323 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ I+MVKK+
Sbjct: 25  QAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMVKKY 84

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           A+  P +   L   FWPG LT++L +     +    T  LKT  FR P C  T  LIE  
Sbjct: 85  AAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLIEEA 143

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++  +  V I
Sbjct: 144 GVPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGIVDNGPTRVGVESTVLDMSTDHPV-I 201

Query: 192 LRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           LRPG +  + +++ I S++L  + V +  TP++PGM   HYAP++QV +     N  + +
Sbjct: 202 LRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTNWDKVV 261

Query: 250 IRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GASSI 297
                 P         K ++  ++ +N    S    +++A+  LF+ ++  DD     +I
Sbjct: 262 EWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNVKAI 321

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
              + P H LG A  NRL ++A 
Sbjct: 322 VTQAFPAHDLGGAYMNRLNKSAG 344


>gi|182413416|ref|YP_001818482.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1]
 gi|177840630|gb|ACB74882.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1]
          Length = 331

 Score =  168 bits (426), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 115/322 (35%), Positives = 172/322 (53%), Gaps = 22/322 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +    L  G  +A+PTETVYGLA ++ +  A R+++  K RPA +PLI H+ D + + 
Sbjct: 17  LARLARMLRDGELVAVPTETVYGLAANALDARACRKIFRAKGRPANDPLIVHIHDRAQLD 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             A  +  +  LA+ FWPGPLT+VL   S   +  + ++ L +   R+P     ++L+  
Sbjct: 77  LLAETNSAAERLARAFWPGPLTMVLPRRSI--VPAVVSSGLPSVAVRMPAHPLFRQLLRR 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+A PSAN  G IS T+  H+  + + + IP I+DGG   IG+ESTIV+++  +  +
Sbjct: 135 AGMPVAAPSANPFGYISPTSAAHV-RAGLGRRIPAILDGGECPIGVESTIVDLRDPRHPQ 193

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPR--SQV--RLRAIHVN 244
           +LRPG +    L+  + V +      T+   P SPG+L  HY+PR  SQ+  R  A  V 
Sbjct: 194 LLRPGAVSRRELESVLGVRVRMPTRRTAPHAPISPGLLSRHYSPRTPSQLHERFSAREVG 253

Query: 245 PR---EALI---RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
                EA I   R   V  +NI        LS+ G L+EAA  LF+ +++ D      + 
Sbjct: 254 DSRVDEAWIFVARPAGVSGENI------FWLSERGSLREAARRLFHTLRLVDAQRFKRLH 307

Query: 299 FSSIPNHGLGIAINNRLERAAA 320
           F      GL  AIN+RL RAA 
Sbjct: 308 FERARGGGLADAINDRLARAAG 329


>gi|288931240|ref|YP_003435300.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642]
 gi|288893488|gb|ADC65025.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642]
          Length = 334

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/320 (36%), Positives = 170/320 (53%), Gaps = 28/320 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E +  G  +A PTETVYGL  D+ N  A+R+++E+K RPA NPLI HVS +  + + A
Sbjct: 23  AAEEIKKGNLVAFPTETVYGLGADALNEKAVRKIFEVKGRPADNPLIVHVSSVDQIYEIA 82

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
             + ++  L   F+PGPLTLV   +    +  ++TA L T   R+P      KLIE    
Sbjct: 83  QPNEIAKKLIDAFFPGPLTLV---MKNKKVPKITTAGLDTVAVRMPDHKVALKLIELSET 139

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSAN+SG+ S T  +H+L   +   + +IIDGG +KIGLEST+V+      V ILR
Sbjct: 140 PIAAPSANKSGKPSPTKAEHVL-EDLGNLVDVIIDGGETKIGLESTVVDTTV-YPVEILR 197

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAIHVNP 245
           PG +  E L+  + V+     ++ S  +SPGM   HYAP ++  +        +A  +  
Sbjct: 198 PGAITKEELEEYVDVK---YAEDFSVAKSPGMKYKHYAPDAETIVLVGKNFLKKATQI-- 252

Query: 246 REALIRFG---NVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
            E  ++ G    V   N+E   N +I  N  +   L+E A NLF  ++  D      I  
Sbjct: 253 AEDFVKKGYRVGVAGLNLEEKRNDVIYKNFGRN--LEEMAKNLFKVLRELDKE-CDVIIV 309

Query: 300 SSIPNHGLGIAINNRLERAA 319
             +   G+G AI NRL +A 
Sbjct: 310 QGVEEKGIGKAIMNRLYKAG 329


>gi|301299954|ref|ZP_07206181.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852436|gb|EFK80093.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 336

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 180/341 (52%), Gaps = 32/341 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I  I   +   +A + L  G  +A PTETVYGL  D+ N  A++R+Y  K RP+ NPL
Sbjct: 1   MLITKIYKPSEFNEAAKELSLGELVAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I  VS + MVK+   V  LS  + K+   FWPG LT+VL +   + +    T  LKTA F
Sbjct: 61  IVTVSSLEMVKRF--VPSLSKDVEKIIEKFWPGSLTIVLKIKDGS-LSKTVTGGLKTAAF 117

Query: 118 RVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P   T   LI   G+P+  PSAN SG+ S T  +H+    +   I  I+D G + +G+
Sbjct: 118 RMPKNETTLNLITALGNPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTDVGV 176

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233
           ESTI+++  E    ILRPG +  E +++ I  E+   ++ V E   P++PGM   HYAP 
Sbjct: 177 ESTIIDMSTEIPT-ILRPGAVTAEEIEKVIGKEVYSDKHKVKENEIPKAPGMKYKHYAPS 235

Query: 234 SQVRLRAIHVNPREALIRFGN-------------VPIKNIENAIISLNLSKTGKLKEAAF 280
           +QV +  ++ +   + +++ N             V  K +EN   SL  +    ++ AA 
Sbjct: 236 AQVLI--VNKDNWNSALQWANENKNQVGILADDEVLSKALENKTYSLGEN----VESAAK 289

Query: 281 NLFNYMKIADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
           NLF  ++  DD      I   + P  G+G+A  NRL+++A 
Sbjct: 290 NLFAGLRYFDDDNQIKYILAEAFPEEGVGLAYMNRLKKSAG 330


>gi|261409693|ref|YP_003245934.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10]
 gi|261286156|gb|ACX68127.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10]
          Length = 365

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 172/336 (51%), Gaps = 27/336 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL +A + L  G  +A PTETVYGL  D+ N  A+ R++  K RP+ NPLI H+S+++ 
Sbjct: 21  QALHEAGQVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPSDNPLIVHISELAQ 80

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +      V+     L   FWPGPL+LVL +     + P  TA L T   R+P       L
Sbjct: 81  LDGLVQQVNETERALMASFWPGPLSLVLPVKPGA-VSPRVTAGLDTVAVRMPDHRVALAL 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSANRSG+ S T   H+L   +   I  ++DGG + +G+EST+V V  + 
Sbjct: 140 ISAAGCPLAAPSANRSGRPSPTLASHVL-EDLAGAIDGVLDGGPAGVGVESTVVQVGEDG 198

Query: 188 KVRILRPGGLEIETLKR-AISVELEYCVD------ETSTPQSPGMLKSHYAPRSQVRL-- 238
            V +LRPGG+  E L   A SV  +  +       E+  P+SPGM  +HYAP+  + +  
Sbjct: 199 AVTVLRPGGVTAEQLAAVAASVRQDPALQRAAGEAESPAPRSPGMKYTHYAPKGAMCVVQ 258

Query: 239 --RAIHVNPREALIRFGNVPIKNIEN------------AIISLNLSKTGKLKEAAFNLFN 284
             RA  V+ R A           +              A ++++L      +EAA  L+ 
Sbjct: 259 GPRADTVSARIAAELEAAARRGEVTGVLSFDEHIGHYAADVAVSLGSLAAPEEAARRLYA 318

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+ GA+ I   + P+ GLG A+ NRL +AA 
Sbjct: 319 GLRRFDEEGATFILAEACPDQGLGAAVMNRLLKAAG 354


>gi|51891213|ref|YP_073904.1| putative translation factor [Symbiobacterium thermophilum IAM
           14863]
 gi|51854902|dbj|BAD39060.1| putative translation factor [Symbiobacterium thermophilum IAM
           14863]
          Length = 349

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 171/329 (51%), Gaps = 24/329 (7%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L AG  +A PTETVYGL  ++ +  A+ R++  K RP+ NPLI H++D + ++  
Sbjct: 21  QAAAILRAGDVVAFPTETVYGLGANALSSEAVARIFAAKGRPSDNPLIVHIADTAQLEGL 80

Query: 74  A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
             SV P +  L +  WPGPLTLV+       + P  TA L T   R+P       LI   
Sbjct: 81  VESVPPTAERLMERCWPGPLTLVMR--KGPAVPPEVTAGLDTVGIRMPDHPVALALIRAA 138

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSAN SG+ S T  +H+L   +   IP ++DGG + +G+EST++++  +  + I
Sbjct: 139 GVPIAAPSANASGRPSPTTAEHVL-EDLAGSIPAVLDGGETGVGVESTVLDMTTDPPM-I 196

Query: 192 LRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRS------------QV 236
           LRPGGL  E L+ AI  V L   V+  +   P+SPGM   HYAP++            Q 
Sbjct: 197 LRPGGLPREELEAAIGPVVLAPGVEGGTVERPRSPGMKYRHYAPQAPLILVEGPVLEMQE 256

Query: 237 RLRAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           ++R + +   E   R G   +   + +  A + L     G L   A +LF  ++  D   
Sbjct: 257 KIRDLAMEYAEEGKRVGILCSAESRGVYVAPVILEYGARGDLAGIASDLFGTLRAFDRHQ 316

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
              I    +P  GLG+AI NRL RAA  R
Sbjct: 317 VDVILAEGVPEEGLGLAIMNRLRRAAGGR 345


>gi|256848017|ref|ZP_05553461.1| translation factor SUA5 [Lactobacillus coleohominis 101-4-CHN]
 gi|256715077|gb|EEU30054.1| translation factor SUA5 [Lactobacillus coleohominis 101-4-CHN]
          Length = 342

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 187/342 (54%), Gaps = 35/342 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + + +A + L +G  +A PTETVYGL  D+ N  A++++Y+ K RP+ NPLI HV+
Sbjct: 5   IYNLDQIGEAAQALRSGQLVAFPTETVYGLGADATNEEAVKKVYQAKGRPSDNPLIVHVA 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            ++MV+K+A+  P  +  L   FWPG LT++L +   + +    T  L T  FR P C  
Sbjct: 65  SVAMVEKYAAEIPEKARQLMTAFWPGSLTIILKIKPGS-LSKTVTGGLSTVAFRFPKCQP 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LIE  G P+  PSAN SG+ S T  +H+    +  +I  I+D G +K+G+EST++++
Sbjct: 124 TLDLIEQAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKIYGILDDGPTKVGVESTVLDM 182

Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
             +  V ILRPG +    ++  I S++L  + V +   P++PGM   HYAP +QV +   
Sbjct: 183 STDHPV-ILRPGAVTKADIEGVIGSIDLNHHHVGKGEIPKAPGMKYKHYAPNAQVYI--- 238

Query: 242 HVNPREALIRFGNVPIKNIENA------------IISLNLSKTGK-------LKEAAFNL 282
            V+P E    + NV +K +E              +  L L K  +       + +A+  L
Sbjct: 239 -VDPEE---DWANV-MKWVEQQPFAVGVMAEDVILKQLTLPKNAQAFSLGNGVTDASARL 293

Query: 283 FNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
           F+ +++ DD     +I   + P H LG+A  NRL ++A  ++
Sbjct: 294 FDGLRMYDDEKQVQAIVTQAFPAHDLGLAYMNRLNKSAGGQH 335


>gi|217963355|ref|YP_002349033.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23]
 gi|290892704|ref|ZP_06555696.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           J2-071]
 gi|217332625|gb|ACK38419.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23]
 gi|290557764|gb|EFD91286.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           J2-071]
 gi|307572068|emb|CAR85247.1| translation factor, SUA5 type [Listeria monocytogenes L99]
          Length = 345

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 175/326 (53%), Gaps = 19/326 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++ +  +  
Sbjct: 19  QEAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIARLDQMNS 78

Query: 73  H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             AS  P ++ L + FWPGPLT++L L   +    +S A L T   R+P    +  LI  
Sbjct: 79  FVASYPPKAIQLMEKFWPGPLTVILPLKKDSLAANVS-AGLSTVGVRMPEHPVSLALINA 137

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++   E  + 
Sbjct: 138 ANVPVAAPSANRSGKPSPTTADHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLEMPI- 195

Query: 191 ILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RAI 241
           ILRPGG+  E +++ I  V++      ET  P++PGM  +HYAP++ V L          
Sbjct: 196 ILRPGGITKEQIEQVIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTPFWQK 255

Query: 242 HVNPREAL-IRFGNVPIKN-IENAIISLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296
            +N  EA   + G +  K  I+    S  +  TG +K   E A +L+  ++  D +    
Sbjct: 256 EINKVEAANKKLGILATKELIDQLTTSAAVETTGSIKALDEIATSLYKGLRAFDHADVDI 315

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322
           I     P   LG AI NRLE+AA  R
Sbjct: 316 IFAEVYPETELGAAIMNRLEKAAGNR 341


>gi|90961568|ref|YP_535484.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius
           UCC118]
 gi|227890654|ref|ZP_04008459.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ATCC
           11741]
 gi|90820762|gb|ABD99401.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius
           UCC118]
 gi|227867592|gb|EEJ75013.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ATCC
           11741]
 gi|300214393|gb|ADJ78809.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius CECT
           5713]
          Length = 336

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 180/341 (52%), Gaps = 32/341 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I  I   +   +A + L  G  +A PTETVYGL  D+ N  A++R+Y  K RP+ NPL
Sbjct: 1   MLITKIYKPSEFNEAAKELRLGELVAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I  VS + MVK+   V  LS  + K+   FWPG LT+VL +   + +    T  LKTA F
Sbjct: 61  IVTVSSLEMVKRF--VPSLSKEVEKIIEKFWPGSLTIVLKIKDGS-LSKTVTGGLKTAAF 117

Query: 118 RVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P   T   LI   G+P+  PSAN SG+ S T  +H+    +   I  I+D G + +G+
Sbjct: 118 RMPKNETTLNLITALGNPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTDVGV 176

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233
           ESTI+++  E    ILRPG +  E +++ I  E+   ++ V E   P++PGM   HYAP 
Sbjct: 177 ESTIIDMSTEIPT-ILRPGAVTAEEIEKVIGKEVYSDKHKVKENEIPKAPGMKYKHYAPS 235

Query: 234 SQVRLRAIHVNPREALIRFGN-------------VPIKNIENAIISLNLSKTGKLKEAAF 280
           +QV +  ++ +   + +++ N             V  K +EN   SL  +    ++ AA 
Sbjct: 236 AQVLI--VNKDNWNSALQWANENKNQVGILADDEVLSKALENKTYSLGEN----VESAAK 289

Query: 281 NLFNYMKIADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
           NLF  ++  DD      I   + P  G+G+A  NRL+++A 
Sbjct: 290 NLFAGLRYFDDDNQIKYILAEAFPEEGVGLAYMNRLKKSAG 330


>gi|47096963|ref|ZP_00234539.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|224500715|ref|ZP_03669064.1| hypothetical protein LmonF1_14001 [Listeria monocytogenes Finland
           1988]
 gi|254828117|ref|ZP_05232804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           N3-165]
 gi|254831036|ref|ZP_05235691.1| hypothetical protein Lmon1_06738 [Listeria monocytogenes 10403S]
 gi|254900320|ref|ZP_05260244.1| hypothetical protein LmonJ_10917 [Listeria monocytogenes J0161]
 gi|254913441|ref|ZP_05263453.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937822|ref|ZP_05269519.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900]
 gi|47014673|gb|EAL05630.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600502|gb|EEW13827.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           N3-165]
 gi|258610426|gb|EEW23034.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900]
 gi|293591448|gb|EFF99782.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 345

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 19/327 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            ++A + L  G  +A PTETVYGL  D+ N  A++++YE K RP+ NPLI H++    + 
Sbjct: 18  FQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMD 77

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  +  P  ++ L + FWPGPLT++L L   +    +S A L T   R+P    +  LI 
Sbjct: 78  QFVASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVS-AGLSTVGVRMPEHPVSLALIG 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T   P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++   E  +
Sbjct: 137 TANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLEIPI 195

Query: 190 RILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RA 240
            ILRPGG+  E +++ I  V++      ET  P++PGM  +HYAP++ V L         
Sbjct: 196 -ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTQFWQ 254

Query: 241 IHVNPREAL-IRFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGAS 295
             +N  EA   + G +  K + N +  S  +  TG +K   E A +L+  ++  D +   
Sbjct: 255 SEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFDHADVD 314

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322
            I     P   LG AI NRLE+AA  R
Sbjct: 315 MIFAEVYPEMELGAAIMNRLEKAAGDR 341


>gi|261420780|ref|YP_003254462.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC61]
 gi|261377237|gb|ACX79980.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC61]
          Length = 349

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 179/331 (54%), Gaps = 19/331 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E+L AG  IA PTETVYGL  D+ N  A+ +++  K RP+ NPLI HV+ ++  +
Sbjct: 21  IREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQAE 80

Query: 72  K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              AS+ P++  L + FWPGPLTLVL   +   +    TA L T   R+P       LIE
Sbjct: 81  AVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALIE 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++  C   V
Sbjct: 140 ASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLD--CSGSV 196

Query: 190 -RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
             ILRPGG+  E L  AI  VE    VD+ + P++PGM  +HYAP++ + + A      +
Sbjct: 197 PTILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 256

Query: 248 ALIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            L+       K +      EN     A + L       L+  A  L++ ++  D++    
Sbjct: 257 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 316

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           I   + P  G+G AI NRL +AA  R  S++
Sbjct: 317 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 347


>gi|319768450|ref|YP_004133951.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC52]
 gi|317113316|gb|ADU95808.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC52]
          Length = 355

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 179/331 (54%), Gaps = 19/331 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E+L AG  IA PTETVYGL  D+ N  A+ +++  K RP+ NPLI HV+ ++  +
Sbjct: 27  IREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQAE 86

Query: 72  K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              AS+ P++  L + FWPGPLTLVL   +   +    TA L T   R+P       LIE
Sbjct: 87  AVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALIE 145

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++  C   V
Sbjct: 146 ASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLD--CSGSV 202

Query: 190 -RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
             ILRPGG+  E L  AI  VE    VD+ + P++PGM  +HYAP++ + + A      +
Sbjct: 203 PTILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 262

Query: 248 ALIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            L+       K +      EN     A + L       L+  A  L++ ++  D++    
Sbjct: 263 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 322

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           I   + P  G+G AI NRL +AA  R  S++
Sbjct: 323 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 353


>gi|56421910|ref|YP_149228.1| hypothetical protein GK3375 [Geobacillus kaustophilus HTA426]
 gi|56381752|dbj|BAD77660.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 349

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 179/331 (54%), Gaps = 19/331 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E+L AG  IA PTETVYGL  D+ N  A+ +++  K RP+ NPLI HV+ ++  +
Sbjct: 21  IREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQAE 80

Query: 72  K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              AS+ P++  L + FWPGPLTLVL   +   +    TA L T   R+P       LIE
Sbjct: 81  AVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALIE 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++  C   V
Sbjct: 140 ASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLD--CSGGV 196

Query: 190 -RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
             ILRPGG+  E L  AI  VE    VD+ + P++PGM  +HYAP++ + + A      +
Sbjct: 197 PTILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 256

Query: 248 ALIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            L+       K +      EN     A + L       L+  A  L++ ++  D++    
Sbjct: 257 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 316

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           I   + P  G+G AI NRL +AA  R  S++
Sbjct: 317 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 347


>gi|315500839|ref|YP_004079726.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5]
 gi|315407458|gb|ADU05575.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5]
          Length = 323

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 174/315 (55%), Gaps = 11/315 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +A   L AG  +A PTETVYGL  ++ +  A  R++E K RP+ +PLI H++D + 
Sbjct: 13  RGIDEAAAVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKARPSFDPLISHLADAAD 72

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +       P ++  LAK FWPGPLTL++D      I P+ T+ L T   RVP     + L
Sbjct: 73  LAALVGEVPAAVAELAKRFWPGPLTLIVDRPEI--IPPIVTSGLDTMAVRVPDESSARAL 130

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+ + E+
Sbjct: 131 IAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGER 189

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV--NP 245
            V +LR G L +E L  A+   +E     +  P +PG L +HYAPR+ +RL A       
Sbjct: 190 PV-VLRLGALPVEALVEAVG-PVEVRQGSSGQPVAPGTLAAHYAPRTPLRLGAAAEPGGG 247

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           R   + F   P      A+    LS  G +  AA  LF+ +   D +G + I    +P  
Sbjct: 248 RRGFLAFREPPADGDWAAVEV--LSPDGDVTAAAARLFDALHRLDAAGVTEIVAEPVPET 305

Query: 306 GLGIAINNRLERAAA 320
           G+G AIN+RL RAAA
Sbjct: 306 GVGRAINDRLRRAAA 320


>gi|297531575|ref|YP_003672850.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. C56-T3]
 gi|297254827|gb|ADI28273.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. C56-T3]
          Length = 355

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/331 (36%), Positives = 179/331 (54%), Gaps = 19/331 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E+L AG  IA PTETVYGL  D+ N  A+ +++  K RP+ NPLI HV+ ++  +
Sbjct: 27  IREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQAE 86

Query: 72  K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              AS+ P++  L + FWPGPLTLVL   +   +    TA L T   R+P       LIE
Sbjct: 87  AVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALIE 145

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++  C   V
Sbjct: 146 ASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLD--CSGGV 202

Query: 190 -RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
             ILRPGG+  E L  AI  VE    VD+ + P++PGM  +HYAP++ + + A      +
Sbjct: 203 PTILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 262

Query: 248 ALIRFGNVPIKNI------EN-----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            L+       K +      EN     A + L       L+  A  L++ ++  D++    
Sbjct: 263 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 322

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           I   + P  G+G AI NRL +AA  R  S++
Sbjct: 323 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 353


>gi|206901525|ref|YP_002250522.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740628|gb|ACI19686.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 337

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 170/328 (51%), Gaps = 20/328 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  AL KA + LDAG  +A PTETVYGL  D+ NP A+R+++  K RP  NP+I HV   
Sbjct: 13  DLEALEKAAQVLDAGGLVAFPTETVYGLGADALNPEAVRKIFVAKGRPQDNPIIVHVGKK 72

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V   A +V P++  L + FWPGPLTL+     +  ++ + TA       R P      
Sbjct: 73  EQVYSLAENVSPIAERLMERFWPGPLTLI--FYKSNLVNDIVTAGSPKVGIRQPMNKVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL+E +G P+A PSAN SG+ S T  +H++   +   I +IIDGG    G+EST+++V  
Sbjct: 131 KLLEIFGRPIAAPSANASGRPSPTRAEHVI-EDLGDRIDMIIDGGEVSFGVESTVLDVTT 189

Query: 186 EKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQV----RLRA 240
           +  + I RPG    E ++R I  + L +   +T    SPG+   HYAP+  +        
Sbjct: 190 DPPI-IYRPGACPKEEIERVIGRKVLLWRGKKTEDIPSPGLKYRHYAPKVPLYIIEEFNE 248

Query: 241 IHVNPREALIRFGNVP--IKNIENAIISLNLSKT------GKLKEAAFNLFNYMKIADDS 292
           I  N  +  ++ G     + + EN  +  ++ K         LKE A NLF Y++  +  
Sbjct: 249 IWQNKIDIWLKEGKKVGILVSKENEGLYPDIVKKYVVGSRNNLKEVALNLFFYLRKLEKE 308

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
               I   S P  G+G+AI +RL RAA 
Sbjct: 309 -VDIIISESFPEEGIGLAIMDRLRRAAG 335


>gi|219670827|ref|YP_002461262.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense
           DCB-2]
 gi|219541087|gb|ACL22826.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 348

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 177/337 (52%), Gaps = 30/337 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A + +  G  +A+PTETVYGL  ++ +  A + ++++K RP  NPLI H+SD++
Sbjct: 15  TEWIKEAAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGRPQDNPLIVHISDLA 74

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           MVK+      P +   A  FWPGPLTLVL+   T  +  + +  L T   R+P      +
Sbjct: 75  MVKRLVEEWTPQAALCADKFWPGPLTLVLE--KTAFVPDVVSGGLGTVAIRMPQHPVALE 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ S T   H+    +  +IPLI+DGG   +G+EST++++  E
Sbjct: 133 LIKEAGVPIAAPSANLSGKPSPTRGIHVWKD-LKGKIPLILDGGPCAVGVESTVLDLTGE 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRL----- 238
               ILRPGG+  E L+  +    E  VD  +    P++PGM   HYAP+ ++ L     
Sbjct: 192 VPT-ILRPGGITKEQLEEVLG---EVAVDRPAPDQAPKAPGMKYRHYAPKGELTLLIGER 247

Query: 239 ----RAIHVNPREALIRFGNVPIK-NIENA--------IISLNLSKTGKLKEAAFNLFNY 285
               R I    R+   R   V I   +E+A         +   L      +E A NL+  
Sbjct: 248 KNVIRKIKDELRKGHSRLKKVGILCTLESAPELHSQLPDLLFVLGSEHHPEEVAGNLYQG 307

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +++ D+ G   I    +   GLG AI NRL++A+  R
Sbjct: 308 LRLCDEQGMDMILAEGVSEKGLGFAIMNRLQKASGQR 344


>gi|163786575|ref|ZP_02181023.1| translation factor, SUA5-family protein [Flavobacteriales bacterium
           ALC-1]
 gi|159878435|gb|EDP72491.1| translation factor, SUA5-family protein [Flavobacteriales bacterium
           ALC-1]
          Length = 318

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 179/326 (54%), Gaps = 21/326 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  S  + KA + L A   +AIPTETVYGLA +  +  AI+ ++E K+RP  NPLI H
Sbjct: 1   MSIV-SKDISKAVDLLTAEELVAIPTETVYGLAGNIYSEKAIKSIFETKQRPFFNPLIVH 59

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +  +  ++K  +  P     LA+ FWPGP+TLVL     T I  + TA   T   RVP  
Sbjct: 60  IPSLDYLEKIVAYIPEKGKLLAEAFWPGPITLVLK--KKTIIPDIITAGKDTVAVRVPNH 117

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T +L+     PLA PSAN    IS T  +H+  +    +I +++DGG  K G+ESTI+
Sbjct: 118 PLTLELLNQLDFPLAAPSANPFSSISPTTAEHV-ETYFMDKIKMVLDGGACKSGIESTII 176

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
             + ++ + I R G   IE ++  +  ++E    +  +P +PGML+ HYAP+++  L   
Sbjct: 177 GFEDDEPI-IYRLGSTPIEAIENVVG-KIEVKNKKEISPDAPGMLERHYAPKTKTILTRN 234

Query: 239 --RAI--HVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDS 292
             ++I  H N R  ++ F ++    + + +I     LS+   L+EAA  L++ +   D  
Sbjct: 235 LSKSIEKHRNKRIGVLMFNDI----LNDDVIQFKIVLSEGKNLEEAASKLYDALHQLDKQ 290

Query: 293 GASSIAFSSIPNHGLGIAINNRLERA 318
               I    +P++GLG +IN+RLERA
Sbjct: 291 DLDIIIAEQLPDYGLGKSINDRLERA 316


>gi|299821849|ref|ZP_07053737.1| Sua5/YciO/YrdC/YwlC family protein [Listeria grayi DSM 20601]
 gi|299817514|gb|EFI84750.1| Sua5/YciO/YrdC/YwlC family protein [Listeria grayi DSM 20601]
          Length = 343

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 180/337 (53%), Gaps = 23/337 (6%)

Query: 4   MSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ T SN    + A + L AG  IA PTETVYGL  D+ N  A+ ++Y  K RP+ NPLI
Sbjct: 8   LTDTSSNEEIYQAATDLLKAGECIAFPTETVYGLGADATNEAAVDKIYTAKGRPSDNPLI 67

Query: 62  CHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++ +  ++   +  P  +  L K FWPGPLT++L L + + +    TA L++   R+P
Sbjct: 68  VHIAHLEQLESLVTDVPDKAKELIKHFWPGPLTIILPLKAGS-LAKNVTAGLQSVGIRMP 126

Query: 121 CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                     Y G PLA PSAN SG+ S T  +H+    +  +I  IIDGG + +GLEST
Sbjct: 127 ENEVAHDFLAYSGLPLAAPSANSSGRPSPTTAQHV-QEDLTGKIAGIIDGGDTGVGLEST 185

Query: 180 IVNVQCEKKV-RILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQ 235
           +++  C   +  ILRPGG+  E ++  I  +L Y      E   P++PGM  +HYAP++ 
Sbjct: 186 VID--CTVPIPAILRPGGVTQEEIEAVIG-QLAYTAVTSKEAEAPKAPGMKYTHYAPQAP 242

Query: 236 VRL----RAIHVNPREALIRFGNVP---IKNIENAIISLNL---SKTGKLKEAAFNLFNY 285
           V L     A  +   EA    G  P   I   + A++  ++   S    L EAA +L++ 
Sbjct: 243 VYLIEGSSAYWIKQIEAAKARGEKPGLLISEKQKAVLQQDIPVYSTGNSLAEAATHLYDG 302

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           ++  D    + I   + P  G+G+A+ NRLE+AA  +
Sbjct: 303 LRSFDHLDVTCIFAETYPQAGIGVALMNRLEKAAGGK 339


>gi|91218516|ref|ZP_01255455.1| Sua5/YciO/YrdC/YwlC [Psychroflexus torquis ATCC 700755]
 gi|91183347|gb|EAS69751.1| Sua5/YciO/YrdC/YwlC [Psychroflexus torquis ATCC 700755]
          Length = 318

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 178/320 (55%), Gaps = 18/320 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ + KA E L+    +AIPTETVYGLA +  +  AIR+++++K+RP  NPLI H+  I 
Sbjct: 5   SSDISKAIELLNKEDVVAIPTETVYGLAGNIYSEKAIRKIFQVKQRPLFNPLIVHIPSID 64

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++K A   P+    LA+ FWPG LTL+L     ++I  + T    T   R+P    T  
Sbjct: 65  QLEKVAREFPIKAQKLAEAFWPGSLTLILP--KKSNILEIVTGGKDTVGVRIPNHPVTLS 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++    PLA PSAN   +IS T+  H+        +P++++GG  K G+ESTI+  +  
Sbjct: 123 LLKQLSFPLAAPSANPYNRISPTSSYHV-EGYFGNALPMVLEGGECKNGIESTIIGFENN 181

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAI 241
           + + + R G + +E +++ I  +++      +TP +PGML  HYAP++++ L       I
Sbjct: 182 EAI-LYRLGAISVEEIEKIIG-KIQIRNKSDTTPNAPGMLAKHYAPKTKMYLLDDIDEFI 239

Query: 242 HVNPRE--ALIRF-GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
             N  +   ++RF G +     E+  I   LSK+G LKEAA  L++ +   D+     I 
Sbjct: 240 ENNKSKKIGVLRFQGKLNTTRFEHIEI---LSKSGDLKEAASKLYSTLHKLDNLNLDIIV 296

Query: 299 FSSIPNHGLGIAINNRLERA 318
               P+ GLG +IN+RLERA
Sbjct: 297 AERFPDVGLGKSINDRLERA 316


>gi|303239759|ref|ZP_07326283.1| Sua5/YciO/YrdC/YwlC family protein [Acetivibrio cellulolyticus CD2]
 gi|302592696|gb|EFL62420.1| Sua5/YciO/YrdC/YwlC family protein [Acetivibrio cellulolyticus CD2]
          Length = 351

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 183/340 (53%), Gaps = 35/340 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +R A + L  G  +A PTETVYGL  ++ N  A+ R++  K RP+ NPLI HV+D 
Sbjct: 14  DISKIRYASQVLKDGGLVAFPTETVYGLGANALNKEAVERIFIAKGRPSDNPLIVHVADK 73

Query: 68  SMVKKHASVDP--LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             V+K  S  P   S+ + K FWPGPLTLV+D L    I  + TA L T   RVP     
Sbjct: 74  RSVEKLVSHIPNKASILMDK-FWPGPLTLVMDKLPI--IPEVITAGLDTVAIRVPSHPIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI     P+A PSAN SG+ S T+ +H++ + +  ++ +IIDGG S IG+EST+V++ 
Sbjct: 131 LALIREAELPVAAPSANVSGKPSPTDSRHVI-NDLNGKVDVIIDGGFSDIGVESTVVDMV 189

Query: 185 CEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
            +  + +LRPGG+ +E L+  +         ++  +D+   P+SPGM   HYAP++ V +
Sbjct: 190 LDPPM-LLRPGGITVEQLEDVLGQIQIDPTLVKKNLDDIIIPRSPGMKYKHYAPKADVII 248

Query: 239 RAIHVNPREALIRFGNVPIKNIENAII----------------SLNLSKTGKLKEA--AF 280
             +  +P +  +R  N  +K  E   I                SL +S   +L     A 
Sbjct: 249 --VEGDPEKIAVRI-NEMVKEYEGKDIKVGILATDETVHLYPESLAVSLGSRLSPGTIAA 305

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           NLF  ++  D +    I   S+ + G+G+AI NR+++AA 
Sbjct: 306 NLFKALRDFDKTDVQMIFAESVDSSGIGLAIMNRMKKAAG 345


>gi|169826582|ref|YP_001696740.1| hypothetical protein Bsph_0998 [Lysinibacillus sphaericus C3-41]
 gi|168991070|gb|ACA38610.1| Hypothetical ywlC protein [Lysinibacillus sphaericus C3-41]
          Length = 344

 Score =  166 bits (421), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 186/349 (53%), Gaps = 35/349 (10%)

Query: 3   IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +  + DSN        +A + L+AG  +A PTETVYGL   + N TA+++++E K RP+ 
Sbjct: 4   VCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAVATNDTAVKKIFEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANL 112
           NPLI HV     V  +   +  ++     LFWPGPLTLV+    ++L+ +      TA L
Sbjct: 64  NPLIVHVGTKEEVTNYIEHISEIAKQCIDLFWPGPLTLVMPAKPNVLAQS-----VTAGL 118

Query: 113 KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P       L++    PLA PSANRSG+ S T   H+L   +   IP I+DGG 
Sbjct: 119 STVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAIHVL-DDLGGYIPYILDGGS 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGML 226
           + IGLEST+++V  E  V ILRPGG+  E L+  I       ++E  ++E  TP++PGM 
Sbjct: 178 TGIGLESTVLDVTHEPPV-ILRPGGITKEILEATIGPVIQPTKIEQKLEE--TPKAPGMK 234

Query: 227 KSHYAPRSQVRLRAIHVNP-REALIRFGN-------VPIKNIEN--AIISLNLSKTGKLK 276
            +HYAP + V L   H     EA+ +          +  +N ++  A    ++ + G  +
Sbjct: 235 YTHYAPNAPVYLINCHDGEVSEAVQQLQQQGHEVALLAPQNFQHIKADFYFSVGEEGSKE 294

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           +   +L++ ++  D + A+ I  ++    G+G AI NRLE+A+  +  S
Sbjct: 295 DMGASLYHALRACDKTTATVILATTTSTEGVGAAIMNRLEKASGGKWYS 343


>gi|302864546|ref|YP_003833183.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302567405|gb|ADL43607.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 323

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 176/315 (55%), Gaps = 11/315 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +A   L AG  +A PTETVYGL  ++ +  A  R++E K RP+ +PLI H++D + 
Sbjct: 13  RGIDEAAAVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKARPSFDPLISHLADAAD 72

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
           +       P ++  LAK FWPGPLTL++D      I P+ T+ L T   RVP   + + L
Sbjct: 73  LAALVGEVPAAVAELAKRFWPGPLTLIVDRPEI--IPPIVTSGLDTMAVRVPDEPSARAL 130

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+ + E+
Sbjct: 131 IAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGER 189

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV--NP 245
            V +LR G L +E L  A+   +E     +  P +PG L +HYAPR+ +RL A       
Sbjct: 190 PV-VLRLGALPVEALVEAVG-PVEVRQGSSGQPVAPGTLAAHYAPRTPLRLGAAAEPGGG 247

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           R   + F   P  +   A+    LS  G +  AA  LF+ +   D +G + I    +P  
Sbjct: 248 RRGFLAFREPPADSDWAAVEV--LSPDGDVTAAAARLFDALHRLDAAGVTEIVAEPVPET 305

Query: 306 GLGIAINNRLERAAA 320
           G+G AIN+RL RAAA
Sbjct: 306 GVGRAINDRLRRAAA 320


>gi|255016728|ref|ZP_05288854.1| hypothetical protein LmonF_00646 [Listeria monocytogenes FSL
           F2-515]
          Length = 344

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 19/327 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            ++A + L  G  +A PTETVYGL  D+ N  A++++YE K RP+ NPLI H++    + 
Sbjct: 17  FQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMD 76

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  +  P  ++ L + FWPGPLT++L L   +    +S A L T   R+P    +  LI 
Sbjct: 77  QFVASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVS-AGLSTVGVRMPEHPVSLALIG 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T   P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++   E  +
Sbjct: 136 TANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLEIPI 194

Query: 190 RILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RA 240
            ILRPGG+  E +++ I  V++      ET  P++PGM  +HYAP++ V L         
Sbjct: 195 -ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTQFWQ 253

Query: 241 IHVNPREAL-IRFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGAS 295
             +N  EA   + G +  K + N +  S  +  TG +K   E A +L+  ++  D +   
Sbjct: 254 SEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFDHADVD 313

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322
            I     P   LG AI NRLE+AA  R
Sbjct: 314 IIFAEVYPETELGAAIMNRLEKAAGNR 340


>gi|16804579|ref|NP_466064.1| hypothetical protein lmo2541 [Listeria monocytogenes EGD-e]
 gi|224503219|ref|ZP_03671526.1| hypothetical protein LmonFR_11993 [Listeria monocytogenes FSL
           R2-561]
 gi|255026494|ref|ZP_05298480.1| hypothetical protein LmonocytFSL_09443 [Listeria monocytogenes FSL
           J2-003]
 gi|255028536|ref|ZP_05300487.1| hypothetical protein LmonL_03806 [Listeria monocytogenes LO28]
 gi|284802979|ref|YP_003414844.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578]
 gi|284996120|ref|YP_003417888.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923]
 gi|16412029|emb|CAD00619.1| lmo2541 [Listeria monocytogenes EGD-e]
 gi|284058541|gb|ADB69482.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578]
 gi|284061587|gb|ADB72526.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923]
          Length = 345

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 19/327 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            ++A + L  G  +A PTETVYGL  D+ N  A++++YE K RP+ NPLI H++    + 
Sbjct: 18  FQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMD 77

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  +  P  ++ L + FWPGPLT++L L   +    +S A L T   R+P    +  LI 
Sbjct: 78  QFVASYPAKAIQLMEKFWPGPLTVILPLKKDSLATNVS-AGLSTVGVRMPEHPVSLALIG 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T   P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++   E  +
Sbjct: 137 TANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLEIPI 195

Query: 190 RILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RA 240
            ILRPGG+  E +++ I  V++      ET  P++PGM  +HYAP++ V L         
Sbjct: 196 -ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSTQFWQ 254

Query: 241 IHVNPREAL-IRFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGAS 295
             +N  EA   + G +  K + N +  S  +  TG +K   E A +L+  ++  D +   
Sbjct: 255 SEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFDHADVD 314

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322
            I     P   LG AI NRLE+AA  R
Sbjct: 315 IIFAEVYPETELGAAIMNRLEKAAGNR 341


>gi|89897678|ref|YP_521165.1| hypothetical protein DSY4932 [Desulfitobacterium hafniense Y51]
 gi|89337126|dbj|BAE86721.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 348

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 177/337 (52%), Gaps = 30/337 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A + +  G  +A+PTETVYGL  ++ +  A + ++++K RP  NPLI H+SD++
Sbjct: 15  TEWIKEAAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGRPQDNPLIVHISDLA 74

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           MVK+      P +   A  FWPGPLTLVL+   T  +  + +  L T   R+P      +
Sbjct: 75  MVKRLVEEWTPQAALCADKFWPGPLTLVLE--KTAFVPDVVSGGLGTVAIRMPKHPVALE 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ S T   H+    +  +IPLI+DGG   +G+EST++++  E
Sbjct: 133 LIKEAGVPIAAPSANLSGKPSPTQGIHVWKD-LKGKIPLILDGGPCAVGVESTVLDLTDE 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRL----- 238
               ILRPGG+  E L+  +    E  VD  +    P++PGM   HYAP+ ++ L     
Sbjct: 192 VPT-ILRPGGITKEQLEEVLG---EVAVDRPAPDQAPKAPGMKYRHYAPKGELTLLIGER 247

Query: 239 ----RAIHVNPREALIRFGNVPIK-NIENA--------IISLNLSKTGKLKEAAFNLFNY 285
               R I    R+   R   V I   +E+A         +   L      +E A NL+  
Sbjct: 248 KNVIRKIKDELRKGHSRLKKVGILCTLESAPELHSQLPDLLFVLGSEHHPEEVAGNLYQG 307

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +++ D+ G   I    +   GLG AI NRL++A+  R
Sbjct: 308 LRLCDEQGMDMILAEGVSEKGLGFAIMNRLQKASGQR 344


>gi|254456156|ref|ZP_05069585.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083158|gb|EDZ60584.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 310

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 175/326 (53%), Gaps = 28/326 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M    SN ++KA ++LD    IA+PTETVYGLA ++ +  A+++++++KKRP+ NPLI H
Sbjct: 1   MKTIQSN-IKKAKKYLDNNDCIAVPTETVYGLAGNAYSNIAVKKIFKLKKRPSNNPLIVH 59

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             +I+ +K   +++     L K F PGP+T VL L     I    T   K+   R P   
Sbjct: 60  YYNINKLKNDCNINENFKKLYKRFSPGPITYVLSLKKNCKISKFVTNKQKSLAVRFPKHP 119

Query: 123 FTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             KKL++   +PLA PSAN S ++S    ++VK    S    ++  I++GG   IG+EST
Sbjct: 120 LFKKLLKNLDYPLAAPSANISTKLSSVQASDVKEEFGS----KVRYILNGGKCNIGVEST 175

Query: 180 IVNVQCEKKVRILRPGGLEI----ETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           I+N+    K  +LR GGLEI    + LK+ IS+ +      +    +PG    HY+P   
Sbjct: 176 IINLT--NKPTLLRYGGLEISRIEKILKKKISINI-----NSKKKIAPGQFPLHYSPGVP 228

Query: 236 VRLRAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           +R+        EA  LI+  N+  KN         LSK   L EAA NL++ ++     G
Sbjct: 229 LRVNVKKSKSNEAFVLIKKRNINSKNY------YYLSKKNNLNEAAKNLYSILRKIKKDG 282

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
              IA   IPN G+G  IN+RL RA+
Sbjct: 283 YKMIAVEKIPNIGIGKTINDRLNRAS 308


>gi|294495411|ref|YP_003541904.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalophilus mahii DSM
           5219]
 gi|292666410|gb|ADE36259.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalophilus mahii DSM
           5219]
          Length = 355

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 33/344 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I   T  +  +KA + L  G  +A PTETVYGL  D+ NP A+ ++++ K RPA NPL
Sbjct: 14  MRIAEETAEDIFKKAGKLLREGKTVAFPTETVYGLGADALNPQAVEQIFKAKGRPADNPL 73

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HVS+     +   +  PL+  LA+ FWPGPLT++L+   T  +  ++T  L+T   R+
Sbjct: 74  IVHVSNQEQCNQLVITFTPLAEKLAECFWPGPLTIILE--KTDRVPYITTGRLETVAIRM 131

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     +K+IE    P+A PSAN SG+ S T   H+    +   I  I+DGG  +IG+ES
Sbjct: 132 PANQIARKIIEAACKPIAAPSANISGRPSPTTASHV-EEDLQGRIDAIVDGGEVEIGVES 190

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPR 233
           T+V+ + E  V ILRPG +  + +++    E+  C+     D    P SPGM  +HY+P 
Sbjct: 191 TVVDARREVPV-ILRPGKISAKDIQQCTKTEV--CIGYARKDNMEKPLSPGMKYTHYSPS 247

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIIS-----------------LNLSKTGKLK 276
           ++V L  +    ++   +  ++  K  ++   +                 L++ +  K +
Sbjct: 248 ARVIL--VQGKAKDVAAKIADIIGKTNDDQKKAGLLLTVEIQKEFPLEKKLSIGQGTKPR 305

Query: 277 EAAFNLFNYMKIADDSGASSIAFS-SIPNHGLGIAINNRLERAA 319
           EAA  +F  ++  D  G   I    S    G+G A+  RL++AA
Sbjct: 306 EAAKRIFAGLREMDSKGMDLIIVDGSFTEKGIGAAVLERLQKAA 349


>gi|315283702|ref|ZP_07871810.1| protein Sua5 [Listeria marthii FSL S4-120]
 gi|313612655|gb|EFR86689.1| protein Sua5 [Listeria marthii FSL S4-120]
          Length = 315

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 169/318 (53%), Gaps = 19/318 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83
           +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H+     +    AS  P +L L
Sbjct: 1   MAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIGRREQMDSFVASYPPKALQL 60

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPGPLT++L L   +    +S A L T   R+P    + +LI+    P+A PSANR
Sbjct: 61  MEKFWPGPLTVILPLKKDSLAANVS-AGLSTVGVRMPEHPVSLELIKAANIPVAAPSANR 119

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ S T   H++   +  +I  IIDGG + +GLEST+++   E  + ILRPGG+  E +
Sbjct: 120 SGKPSPTTANHVI-EDLDGKIAGIIDGGPTGVGLESTVIDCSLEMPI-ILRPGGITKEQI 177

Query: 203 KRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRL-------RAIHVNPREAL-IRF 252
           +R I           ET  P++PGM  +HYAP++ V L           +N  EA   + 
Sbjct: 178 ERVIGPVDSSSNSTTETEKPKAPGMKYTHYAPKAPVYLIEGSTEFWQSEINKAEAAHKKI 237

Query: 253 GNVPIKNIENAI-ISLNLSKTGK---LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
           G +  K + + +  S  +  TG    L E A NL+N ++  D +    I     P   LG
Sbjct: 238 GILATKELTDKLTTSAVIQTTGSIDALDEVATNLYNGLRAFDHADVELIFAEVYPETELG 297

Query: 309 IAINNRLERAAAPRNQSQ 326
            AI NRLE+AA  R  S+
Sbjct: 298 AAIMNRLEKAAGNRRISE 315


>gi|299537975|ref|ZP_07051261.1| hypothetical protein BFZC1_18255 [Lysinibacillus fusiformis ZC1]
 gi|298726557|gb|EFI67146.1| hypothetical protein BFZC1_18255 [Lysinibacillus fusiformis ZC1]
          Length = 344

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 186/351 (52%), Gaps = 39/351 (11%)

Query: 3   IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +  + DSN        +A + L+AG  +A PTETVYGL   + N  A+++++E K RP+ 
Sbjct: 4   VCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAIATNDLAVKKIFEAKGRPSD 63

Query: 58  NPLICHVS---DISMVKKHASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTA 110
           NPLI HV    ++++   H  +  ++     LFWPGPLTLV+    ++L+ +      TA
Sbjct: 64  NPLIVHVGTKEEVAIYIDH--ITDIAKQCMDLFWPGPLTLVMPAKPNVLAKS-----VTA 116

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   R+P       L++    PLA PSANRSG+ S T   H+L   +   IP I+DG
Sbjct: 117 GLSTVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAVHVL-DDLEGYIPYILDG 175

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPG 224
           G + IGLEST+++V  E  V ILRPGG+  E L+  I       ++E  +D  +TP++PG
Sbjct: 176 GSTGIGLESTVLDVTHEPPV-ILRPGGITKEMLEAKIGPVIQPTKIEQKLD--ATPKAPG 232

Query: 225 MLKSHYAPRSQVRLRAIHVNP-REALI-------RFGNVPIKNIENAIISLNLS--KTGK 274
           M  +HYAP + V L    V    EA++       R   +  +N E   +    S  + G 
Sbjct: 233 MKYTHYAPNAPVYLIDCDVEKVNEAVLHLQRQGHRVALLAPENFEEIKVDFYFSIGEAGS 292

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            +E    L+N ++  D + A+ I  ++    G+G AI NRLE+A+  +  S
Sbjct: 293 KEEMGAALYNALRACDKTTATVILATTTSIEGVGAAIMNRLEKASGGKWYS 343


>gi|310659435|ref|YP_003937156.1| sua5/ycio/yrdc/ywlc family protein [Clostridium sticklandii DSM
           519]
 gi|308826213|emb|CBH22251.1| sua5/yciO/yrdC/ywlC family protein [Clostridium sticklandii]
          Length = 347

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 177/328 (53%), Gaps = 25/328 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68
           L K    L AG  +  PTETVYGL  ++ +P A +++YE K RP+ NPLI H+S   D+ 
Sbjct: 22  LHKVANLLKAGKTVVFPTETVYGLGANALDPEAAKKIYEAKGRPSDNPLIVHISKKEDVD 81

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  + S D  S  L + FWPGPLTL+LD   +  I   +T  L T   R+P     +KL
Sbjct: 82  FLAGNISQD--SKLLMEDFWPGPLTLILDKSDSVPIE--TTGGLMTVAIRMPSNPIARKL 137

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN SG+ SIT+ K+++   +C+ +  II    S+IGLEST+V++    
Sbjct: 138 IDLAGVPIAAPSANISGRPSITSSKYLV-EELCERVDAIIISEDSEIGLESTVVDMTAST 196

Query: 188 KVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            V ILRPG +    +++ ++ E+E      DE + P+SPGM   HY+P + V +    ++
Sbjct: 197 PV-ILRPGKIGKTEIEKILNKEIELDPSLKDENAAPKSPGMKYKHYSPNATVIVVTGSLD 255

Query: 245 PREALIRFGNVPIKNIENAI--------ISL----NLSKTGKLKEAAFNLFNYMKIADDS 292
             +  I       KNI + +        +SL     +S     +EAA NLF  +++ D+ 
Sbjct: 256 EMKQKINQKLSLDKNIGDKVKVVCLEDRVSLYDGYGISWGKSSQEAAKNLFKILRLMDEQ 315

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
               + F ++ +  +  A+ NRL +AA 
Sbjct: 316 NIEVVYFEALNSDEISEAVMNRLIKAAG 343


>gi|282600841|ref|ZP_05979863.2| Sua5/YciO/YrdC/YwlC family protein [Subdoligranulum variabile DSM
           15176]
 gi|282571097|gb|EFB76632.1| Sua5/YciO/YrdC/YwlC family protein [Subdoligranulum variabile DSM
           15176]
          Length = 339

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 170/327 (51%), Gaps = 26/327 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G  +A+PTETVYG+A D+RN  A+R+++E K RP  NPLI H+  + M++   
Sbjct: 16  AAELLRQGELVALPTETVYGIAADARNGDAVRKIFEAKGRPQDNPLIVHICGMDMLQGIV 75

Query: 75  SVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           S  P  +L LA  FWPGPLT+V+      ++  ++ A L T   R+P     + +I+  G
Sbjct: 76  SEVPERALKLAAAFWPGPLTMVMP--RGAEVSEVTCAGLDTVGVRMPSHPVVQAVIKASG 133

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
              A PSAN SG+ S TN +  L + +   +PLI+DGG S +G+EST+V+V  E  + +L
Sbjct: 134 VAFAAPSANLSGKPSPTNAQDTL-ADMHGRLPLILDGGESAVGVESTVVSVTGEHPI-LL 191

Query: 193 RPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQV---------- 236
           RPG +  E ++  +  E++        + E    +SPGM   HYAP++QV          
Sbjct: 192 RPGYITKEQMEAVLGEEVQVSPAILEKLKEGEVARSPGMKYKHYAPKAQVTILRGNFEAY 251

Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
            R  A H  P    + F     +  +  + S+   +       A +LF  ++  D  GA 
Sbjct: 252 CRYVAEHAAPGVWALCFDG---EGAQLPVPSIEYGRNHDGATQAHHLFTALRDLDRHGAQ 308

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322
            +        G+ +A+ NRL RAAA R
Sbjct: 309 VVYARCPEQDGISMAVYNRLIRAAAFR 335


>gi|148543689|ref|YP_001271059.1| translation factor SUA5 [Lactobacillus reuteri DSM 20016]
 gi|184153099|ref|YP_001841440.1| putative translation factor [Lactobacillus reuteri JCM 1112]
 gi|227363332|ref|ZP_03847461.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM2-3]
 gi|325682060|ref|ZP_08161578.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM4-1A]
 gi|148530723|gb|ABQ82722.1| translation factor SUA5 [Lactobacillus reuteri DSM 20016]
 gi|183224443|dbj|BAG24960.1| putative translation factor [Lactobacillus reuteri JCM 1112]
 gi|227071639|gb|EEI09933.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM2-3]
 gi|324978704|gb|EGC15653.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM4-1A]
          Length = 342

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 177/325 (54%), Gaps = 19/325 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ I+MV+
Sbjct: 11  IAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMVE 70

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
           K+A+  P +   L   FWPG LT++L +     +    T  LKT  FR P C  T  LIE
Sbjct: 71  KYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLIE 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++  +  V
Sbjct: 130 EAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGIVDNGPTRVGVESTVLDMSTDHPV 188

Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPG +  + +++ I S++L  + V +  TP++PGM   HYAP++QV +     +  +
Sbjct: 189 -ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTDWDK 247

Query: 248 ALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GAS 295
            +      P         K ++  ++ +N    S    +++A+  LF+ ++  DD     
Sbjct: 248 VVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNVK 307

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
           +I   + P H LG A  NRL ++A 
Sbjct: 308 AIVTQAFPAHDLGGAYMNRLNKSAG 332


>gi|256850893|ref|ZP_05556282.1| Sua5 family translation factor [Lactobacillus jensenii 27-2-CHN]
 gi|260661107|ref|ZP_05862021.1| Sua5 family translation factor [Lactobacillus jensenii 115-3-CHN]
 gi|282934195|ref|ZP_06339473.1| hypothetical protein HMPREF0886_1793 [Lactobacillus jensenii 208-1]
 gi|256615955|gb|EEU21143.1| Sua5 family translation factor [Lactobacillus jensenii 27-2-CHN]
 gi|260548044|gb|EEX24020.1| Sua5 family translation factor [Lactobacillus jensenii 115-3-CHN]
 gi|281301809|gb|EFA94075.1| hypothetical protein HMPREF0886_1793 [Lactobacillus jensenii 208-1]
          Length = 333

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 175/327 (53%), Gaps = 16/327 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + + +A EFL  G  +A PTETVYGL   +    +++ +Y+ K RP+ NPLI  VS
Sbjct: 5   ILKKDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M+K++A   P  +  L K FWPGPLTL+L L+    +  + T  LKTA FR P    
Sbjct: 65  DEDMMKQYAKFIPERAEKLIKHFWPGPLTLLL-LVKEGSLPTVVTGGLKTAAFRCPDDEL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI+++
Sbjct: 124 THELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             E  + +LRPG +  E L + +  ++      V + + P++PGM   HYAP + V +  
Sbjct: 183 SVETPI-VLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSAPVWV-V 240

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDSGA 294
             V     +    +  +  +++ + +L+L    K      LK+A  NLF+ ++  DD  +
Sbjct: 241 DDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRFFDDEAS 300

Query: 295 -SSIAFSSIPNHGLGIAINNRLERAAA 320
             +I           +A  NRL +AAA
Sbjct: 301 IKTIYVQGFDEGEQSLAYMNRLNKAAA 327


>gi|223937828|ref|ZP_03629728.1| Sua5/YciO/YrdC/YwlC family protein [bacterium Ellin514]
 gi|223893434|gb|EEF59895.1| Sua5/YciO/YrdC/YwlC family protein [bacterium Ellin514]
          Length = 388

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 181/330 (54%), Gaps = 27/330 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+++A E L AG  +A+PTETVYGLA ++ +  A+ R++E K RPA NP+I HV+DI M
Sbjct: 65  KAVKRAAELLRAGELVALPTETVYGLAANALDAAAVGRIFEAKGRPAHNPIIVHVADIEM 124

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   S  P+    LA+ FWPGPLTLVL       I  + TA   T   R P   F + +
Sbjct: 125 ARACVSEWPVQAEKLARAFWPGPLTLVLP--RAESIPDIVTAGGSTVGLRWPSHPFIQAV 182

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSAN S QIS TN +H+ S  +   I LI+DGG S++G+EST++++    
Sbjct: 183 IRECGFPLAAPSANPSNQISPTNAEHV-SKGLGTRIKLIVDGGQSQVGIESTVLDISV-S 240

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTP-------QSPGMLKSHYAPRSQVRLRA 240
             R+LRPG +  E L+ A+    E  + +TS         +SPG LK HY+P++++ + +
Sbjct: 241 PARVLRPGMIREEALQAALPA--ETVLSQTSKKGTKAEIIKSPGQLKKHYSPKARLEILS 298

Query: 241 IHVNP----REALIRFGNVPIKNIENAIISLNLSKTGKLK------EA-AFNLFNYMKIA 289
               P    + A  +     I+ I + +I  +  + G +       EA A  ++  +   
Sbjct: 299 WENEPDFLSQIARRKIAAEKIQVIAHTVIP-SAGRFGGVSVIPHDAEAFARAIYAELHRC 357

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           D++GA  I   ++P      AI +RL+RAA
Sbjct: 358 DEAGAELIIVEALPESSEWQAIADRLKRAA 387


>gi|297205770|ref|ZP_06923165.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii JV-V16]
 gi|297148896|gb|EFH29194.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii JV-V16]
          Length = 337

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 175/327 (53%), Gaps = 16/327 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + + +A EFL  G  +A PTETVYGL   +    +++ +Y+ K RP+ NPLI  VS
Sbjct: 9   ILKKDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLIVTVS 68

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M+K++A   P  +  L K FWPGPLTL+L L+    +  + T  LKTA FR P    
Sbjct: 69  DEDMMKQYAKFIPERAEKLIKHFWPGPLTLLL-LVKEGSLPTVVTGGLKTAAFRCPDDEL 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI+++
Sbjct: 128 THELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLESTIIDL 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             E  + +LRPG +  E L + +  ++      V + + P++PGM   HYAP + V +  
Sbjct: 187 SVETPI-VLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSAPVWV-V 244

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDSGA 294
             V     +    +  +  +++ + +L+L    K      LK+A  NLF+ ++  DD  +
Sbjct: 245 DDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRFFDDEAS 304

Query: 295 -SSIAFSSIPNHGLGIAINNRLERAAA 320
             +I           +A  NRL +AAA
Sbjct: 305 IKTIYVQGFDEGEQSLAYMNRLNKAAA 331


>gi|330814380|ref|YP_004358619.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487475|gb|AEA81880.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 315

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 166/310 (53%), Gaps = 10/310 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KA + + +G  IAIPTETVYGLA ++    +++++Y +KKRP  NPLI H S +  + 
Sbjct: 15  LIKASKLIKSGKVIAIPTETVYGLAGNAYRNDSVKKIYSLKKRPKNNPLIVHFSSVKTMN 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130
           +   ++   + LAK F PGPLT +L L   + I  L          R+P   T   +++ 
Sbjct: 75  QEVVINEQLIKLAKKFSPGPLTYILPLKKESKISKLVLNKKHQIACRIPNNKTFLAVLKQ 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+A PSAN S ++S T    +      K++  I+D   + IGLEST++ +     ++
Sbjct: 135 SGVPIAAPSANLSNKLSTTRSADV-EKEFGKKLSYILDSKKTSIGLESTVLLLGAS--LK 191

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           ILRPG +  E + + +  ++ + V       SPG  K HY+P   V L      P  AL+
Sbjct: 192 ILRPGAITKEMIFKVLRKKI-HEVKNQGDIISPGQFKKHYSPGIPVYLNQKKPKPNGALL 250

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG   IK          LSK   LKEAA NL+  ++   + G  SI+ ++IPN G+G A
Sbjct: 251 VFGKQKIKK-----DIFFLSKRSSLKEAASNLYVLLRKIKELGYKSISITNIPNTGIGKA 305

Query: 311 INNRLERAAA 320
           IN+R+ RA++
Sbjct: 306 INDRIRRASS 315


>gi|126653458|ref|ZP_01725554.1| hypothetical protein BB14905_19345 [Bacillus sp. B14905]
 gi|126589814|gb|EAZ83947.1| hypothetical protein BB14905_19345 [Bacillus sp. B14905]
          Length = 344

 Score =  165 bits (417), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 183/349 (52%), Gaps = 35/349 (10%)

Query: 3   IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +  + DSN        +A + L+AG  +A PTETVYGL   + N  A+++++E K RP+ 
Sbjct: 4   VCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAVATNDVAVKKIFEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANL 112
           NPLI HV     V  +   +  ++     LFWPGPLTLV+    ++L+ +      TA L
Sbjct: 64  NPLIVHVGTKEEVTNYIEHISEIAKQCMDLFWPGPLTLVMPAKPNVLAQS-----VTAGL 118

Query: 113 KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P       L++    PLA PSANRSG+ S T   H+L   +   IP I+DGG 
Sbjct: 119 STVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAIHVL-DDLGGYIPYILDGGS 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGML 226
           + IGLEST+++V  E  V ILRPGG+  E L+  I       ++E  ++E  TP++PGM 
Sbjct: 178 TGIGLESTVLDVTHEPPV-ILRPGGITKEMLEAKIGPVIQPTKIEQKLEE--TPKAPGMK 234

Query: 227 KSHYAPRSQVRLRAIHVNP-REALIRFGN----VPIKNIEN-----AIISLNLSKTGKLK 276
            +HYAP + V L   H     EA+ +       V +   EN     A    ++   G  +
Sbjct: 235 YTHYAPNAPVYLINCHDGEVSEAVQQLQQQGHAVALLAPENFQHSKADFYFSVGAEGSKE 294

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           E   +L++ ++  D + A+ I  ++    G+G AI NRLE+A+  +  S
Sbjct: 295 EMGASLYHALRACDKTTATVILATTTSAEGVGAAIMNRLEKASGGKWYS 343


>gi|172058702|ref|YP_001815162.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sibiricum
           255-15]
 gi|171991223|gb|ACB62145.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sibiricum
           255-15]
          Length = 332

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 175/322 (54%), Gaps = 15/322 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L  G  +AIPTETVYGLA D+ + TA+RR++  K RP+ NPLI HV+ +   K
Sbjct: 11  LKEAVRLLQEGEVVAIPTETVYGLAGDATSETAVRRIFAAKGRPSDNPLIVHVASVEQAK 70

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  +  P ++  L   FWPG LT++L+  S      L TA L T   R+P      +LIE
Sbjct: 71  QFVTHIPDVAAQLMDTFWPGALTIILE--SNGRASSLVTAGLDTIGLRMPDHPLALQLIE 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  LA PSANRSG+ S T+  H+ +  +   I  I+DGG + IG+EST+++      V
Sbjct: 129 ATGLGLAAPSANRSGKPSPTSSAHV-AHDLSGRIAAIVDGGETGIGVESTVIDCTTNPPV 187

Query: 190 RILRPGGLEIETLKRAI-SVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPGG+  E ++  I +  L+  +  +  TP++PGM  +HYAP + + + A  ++  +
Sbjct: 188 -ILRPGGVTREQIESVIGNTALDPALSMKDQTPKAPGMKYTHYAPEATLSVVAGDLSFLQ 246

Query: 248 ALI-------RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
            LI       +   V + + E+    +       ++ AA  L++ ++  D +    I   
Sbjct: 247 QLIDEARQNGQKTGVILFDGEDIEADVRCFLGTTMETAAQRLYDCLRRFDQTTVDQIFVR 306

Query: 301 SIPNHGLGIAINNRLERAAAPR 322
            +   G+G+A+ NRL +AA  R
Sbjct: 307 DLSEEGVGLAVRNRLHKAAGGR 328


>gi|189183849|ref|YP_001937634.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda]
 gi|189180620|dbj|BAG40400.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda]
          Length = 322

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 164/311 (52%), Gaps = 13/311 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A +F++ G  +  PTETVYG+  D+ N  A + +Y IK RP  NPLI HV++I   +   
Sbjct: 15  AAQFIEQGKLVIFPTETVYGIGADATNDNACQNIYRIKNRPTNNPLIIHVNNIQAAQTIG 74

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGH 133
             + L++ LA L WPGP++LV+ L  +  I   +TANL T   R+P   T   L++    
Sbjct: 75  IFNKLAIKLATL-WPGPISLVVPLNQSAGISRTATANLDTVAIRIPAHKTALTLLQLTQK 133

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSAN SG +S T  +H            I+ G  S  GLESTI++   ++ + ILR
Sbjct: 134 PIAAPSANPSGYLSPTTYQHANIHFQNSPNTFILKGTQSTYGLESTIIDTTTDRPI-ILR 192

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
            G +  E +K              +  ++PGM+  HY+P +++RL A  + P+E  + +G
Sbjct: 193 HGFITTEIIKTITGQNPIISKKHNNFLKAPGMMLKHYSPITKIRLNATKLLPKEVGLNYG 252

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS------SIAFSSIPNHGL 307
                N       LNLS    L  AA NL++ +   D+   +      +IA + IPN G+
Sbjct: 253 ----PNTLTGKYCLNLSPNSNLMNAAANLYHMLHQLDNYAQNPINEVETIAIAQIPNIGI 308

Query: 308 GIAINNRLERA 318
           GIAIN++L RA
Sbjct: 309 GIAINDKLNRA 319


>gi|154505651|ref|ZP_02042389.1| hypothetical protein RUMGNA_03190 [Ruminococcus gnavus ATCC 29149]
 gi|153794090|gb|EDN76510.1| hypothetical protein RUMGNA_03190 [Ruminococcus gnavus ATCC 29149]
          Length = 523

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 174/338 (51%), Gaps = 33/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D +A+R+A E L  G  +A PTETVYGL  ++ +  A ++ YE K RP+ NPLI H++D+
Sbjct: 27  DEDAIREAGEILREGGLVAFPTETVYGLGANALDEEAAKKTYEAKGRPSDNPLIVHIADL 86

Query: 68  SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
             + +   +V P +  LAK FWPGPLT++ +  S       +T  L T   R+P     +
Sbjct: 87  EDLSEITENVPPETELLAKHFWPGPLTMIFEKSSLVPYG--TTGGLDTVAVRMPSDLIAR 144

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI   G  ++ PSAN SG+ S T  +H+    +  +I +IIDGG   IGLESTI+++  
Sbjct: 145 KLILAAGGYVSAPSANTSGRPSPTTAEHVW-EDLNGKIEMIIDGGSVDIGLESTILDMTV 203

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR- 237
              + ILRPG +  + L+  I V     VDET         P++PGM   HYAP++++  
Sbjct: 204 SPPM-ILRPGAITADMLEEVIGV---VSVDETILGSESSQAPKAPGMKYRHYAPKAKLTI 259

Query: 238 -----------LRAIHVNPREALIRFG----NVPIKNIENAIISLNLSKTGKLKEAAFNL 282
                      +R +        ++ G    N  ++   + ++  N+      K  A NL
Sbjct: 260 VEGSLKEEVFAIRQLAYEKSRQGVQVGIIGTNETVEFYTHGLVK-NIGSRENEKTIARNL 318

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++  D+   S I   S    G+G AI NRLE+AA 
Sbjct: 319 YRILREFDEEDVSEIYSESFAIQGIGNAIMNRLEKAAG 356


>gi|238927404|ref|ZP_04659164.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC
           43531]
 gi|238884686|gb|EEQ48324.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC
           43531]
          Length = 350

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 167/334 (50%), Gaps = 28/334 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +A PTETVYGL  +  +  A  R+YE K RP+ NPLI H++D+SM+ 
Sbjct: 14  IARAAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLILHIADLSMLN 73

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
           + A   P  + HL   F PGP+T+V+       + PL T  L T   R P     ++ I 
Sbjct: 74  ETAEAVPSTAAHLLTAFAPGPITVVVP--KAVHVPPLVTGGLSTVGVRCPAHDIARRFIR 131

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T    +  + +   IPLI+DGG    G+ESTIV+   E +V
Sbjct: 132 AAGVPIAAPSANTSGRPSPTAAAMVY-ADMAGRIPLILDGGSCSFGVESTIVDCTEEGRV 190

Query: 190 RILRPGGLEIETLKRA---ISVELEYCV-DETSTPQSPGMLKSHYAPR----------SQ 235
            ILRPG +  E +      I V ++  +  E + P++PGM  +HYAPR          S 
Sbjct: 191 TILRPGAVTYEMIAAEFPHIEVRMDTALSSENAAPRAPGMKYTHYAPRVPLTVFAGTGSD 250

Query: 236 VR-------LRAIHVNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
           V        LR      R ALI        +K +  A+ + +    G     A  L++ +
Sbjct: 251 VTGALREEILRRTAAGERPALIASNETITALKGLIPAVYTYHCGARGNHSAFASCLYDAL 310

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD+ A+S+        GLG+AI NRL +A+ 
Sbjct: 311 RHFDDTAATSLLAEGTGAVGLGLAIMNRLRKASG 344


>gi|254172885|ref|ZP_04879559.1| Sua5/YciO/YrdC/YwlC [Thermococcus sp. AM4]
 gi|214033041|gb|EEB73869.1| Sua5/YciO/YrdC/YwlC [Thermococcus sp. AM4]
          Length = 343

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 24/336 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M       LR A   +  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPLI H
Sbjct: 7   MKAGPDERLRVAARLIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIIH 66

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +++   + + A   P  +L LA+ FWPGPLTLVL       +  ++T  L T   R+P  
Sbjct: 67  IAEREWLFELARDIPEKALELAERFWPGPLTLVLP--KGERVPSVTTGGLDTVAVRMPAH 124

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI   G P+A PSAN SG+ S T+  H++     + I  I+DGG + IG+EST++
Sbjct: 125 PIALELIRLSGRPVAAPSANISGKPSPTDADHVVDDFYGR-IECIVDGGPTWIGVESTVL 183

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD--ETSTPQSPGMLKSHYAPRSQV-- 236
           ++  +  V +LRPGGL +E ++  +  VE+   V   E    ++PGM   HY+P +QV  
Sbjct: 184 DLTGDVPV-LLRPGGLPLEEIEMVVGRVEIHPAVKGVEVDLARAPGMKYKHYSPNAQVIV 242

Query: 237 ----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                     ++  +    R   +R G +  +    A    +L ++   ++ A N+F  +
Sbjct: 243 VEGSRNAVREKIDELVREFRGKGLRVGVMATEE-HGADAFFHLGES--TEDVARNVFRAL 299

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  D +G   I    +   GLG+A+ NRL +AA  R
Sbjct: 300 RELDKAGVDVIIAEGVEERGLGLAVMNRLRKAAGYR 335


>gi|28378948|ref|NP_785840.1| SUA5 family translation factor [Lactobacillus plantarum WCFS1]
 gi|300766723|ref|ZP_07076640.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308181158|ref|YP_003925286.1| SUA5 family translation factor [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271785|emb|CAD64691.1| SUA5 family translation factor (putative) [Lactobacillus plantarum
           WCFS1]
 gi|300495823|gb|EFK30974.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308046649|gb|ADN99192.1| SUA5 family translation factor [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 339

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 24/325 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HV+D+  V++ A
Sbjct: 14  AAALLTAGQLVAFPTETVYGLGADATNVDAVKQVYLAKGRPSDNPLIVHVADVETVERFA 73

Query: 75  SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
              PLS     L K FWPGPLT++  L     + P  T  L+TA FR P    T  LI  
Sbjct: 74  Q--PLSEAAKKLIKAFWPGPLTMIFKLKPDA-LAPEVTGGLQTAAFRNPDNEATLALIRA 130

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+  PSAN SG+ S T  +H+L   +  +I  I+D G +K+G+EST++++  +K   
Sbjct: 131 AGTPIVGPSANTSGKPSPTTAQHVL-HDLRGKIAGILDDGPTKVGVESTVLDLSTDKPA- 188

Query: 191 ILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           ILRPG +  E ++R I + ++   + V     P++PGM   HYAP +QV +     +  E
Sbjct: 189 ILRPGAVTPEAIERVIGMPVQTELHHVGAKEVPKAPGMKYKHYAPNAQVYIVDRSEDWPE 248

Query: 248 ALIRFG--NVPIKNIENAIISLN---------LSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
           AL      +VP+  +    I  N          S    ++ A+  LF  ++  D ++   
Sbjct: 249 ALAWAAQQDVPMGVMATDDILTNNQIPANCEQFSLGEDIQSASRELFAGLRHFDTETEIK 308

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   +  N GLG+A  NRL ++A 
Sbjct: 309 DILCQAFENKGLGLAYMNRLNKSAG 333


>gi|269792803|ref|YP_003317707.1| Sua5/YciO/YrdC/YwlC family protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100438|gb|ACZ19425.1| Sua5/YciO/YrdC/YwlC family protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 330

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/323 (36%), Positives = 170/323 (52%), Gaps = 17/323 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            ALR   + + +G  +A+PTETVYGL  D+ NP A RR++++K RP  NP+I HVS    
Sbjct: 14  GALRLGADLILSGRLVAMPTETVYGLGGDATNPEAARRIFQVKGRPLDNPIIVHVSCSEE 73

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
            ++   + PL+  LA+ FWPGPLTLV+          L    L T   R P     ++LI
Sbjct: 74  AREVGRMTPLAEDLARAFWPGPLTLVVPSRGVVPREFL--GGLDTVGIRCPSHPVARRLI 131

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G P+  PSANRSG+ S T+   +L   +   IPLI+DGG  ++GLEST+V+V   + 
Sbjct: 132 EISGVPIGAPSANRSGRPSPTDALTVL-EDLEGLIPLILDGGPCEVGLESTVVDVTGSEP 190

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--RAIHVNPR 246
           V ILR GG+    + +A+   ++    E    +SPG    HYAP   V L  R++ V   
Sbjct: 191 V-ILRQGGVTERMIVQAVG-RVQVAAGEELLRRSPGTRHRHYAPEVPVLLWDRSVPVQ-- 246

Query: 247 EALIRFGNVPIKNIENAIISLNLS-KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
                 G V    I +    +  S +   L+E AF LF   +  +  GAS I  + +P  
Sbjct: 247 ---CPPGRVGYVGISDPPFEVAWSVRPRDLREYAFLLFRTFREMERGGASVI-VAELPER 302

Query: 306 G--LGIAINNRLERAAAPRNQSQ 326
           G  LG AI +RL RA+  R  ++
Sbjct: 303 GEALGDAIRDRLIRASGGRGLAK 325


>gi|295400676|ref|ZP_06810653.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112634|ref|YP_003990950.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1]
 gi|294977257|gb|EFG52858.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217735|gb|ADP76339.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1]
          Length = 351

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/327 (35%), Positives = 177/327 (54%), Gaps = 24/327 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A ++L AG  +A PTETVYGL  ++++  A+ +++  K RP+ NPLI H++ +  + 
Sbjct: 24  IKEAAQWLKAGEVVAFPTETVYGLGANAKDTKAVEKIFAAKGRPSDNPLIVHIAHVKQLD 83

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  S  P ++  L + FWPGPLTL+L       I    TA L T   R+P       LIE
Sbjct: 84  EIVSDVPRIAGMLIERFWPGPLTLILPKKEGV-ISDKVTAGLSTVAVRMPDHPVALALIE 142

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN SG+ S T   H+  + +   I  I+DGG + IG+EST+++  C   V
Sbjct: 143 ESGLPLAAPSANISGRPSPTTAAHVF-TDLNGRIVGIVDGGETGIGVESTVLD--CTSDV 199

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------R 239
             ILRPGG+  E L++ I +V ++  + DE  TP+SPGM  +HYAP+S + +        
Sbjct: 200 PTILRPGGVTKEALEQVIGNVAVDSALTDERQTPKSPGMKYTHYAPKSPMAIVQGSPAFL 259

Query: 240 AIHVNPREALIRFGNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
              VN + AL +   V +   E      +A + L       L+  A  L++ ++  D++ 
Sbjct: 260 QTLVNQQRALGK--KVGVMTTEENCLFYDADVVLTCGSRHDLRTVASRLYDTLRQFDETD 317

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I   S P  G+G AI NRL +AA 
Sbjct: 318 VDFIYSESFPAEGIGAAIMNRLRKAAG 344


>gi|304438487|ref|ZP_07398427.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368570|gb|EFM22255.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 350

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 172/347 (49%), Gaps = 36/347 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T +    +A   +  G  +A PTETVYGL  +  +  A  R+YE K RP+ NPLI
Sbjct: 4   EILRPTSTEHFARAAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D+SM+ + A  V P + HL   F PGP+T+++       I PL T  L T   R P
Sbjct: 64  LHIADLSMLHEAAEDVPPAAAHLLTAFAPGPITVIVP--KAAHIPPLVTGGLATVGVRCP 121

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LI   G P+A PSAN SG+ S T    + ++ +   IPLI+DGG    G+EST
Sbjct: 122 AHDVARRLIRAAGMPIAAPSANISGRPSPTTAA-MTAADMMGRIPLILDGGSCSWGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY--------CVDETSTPQSPGMLKSHYA 231
           IV+   E  + ILRPG +  E     IS EL +         V   + P++PGM  +HYA
Sbjct: 181 IVDCTEEGCITILRPGAVTPEM----ISAELPHLTVRMDAALVSADTAPRAPGMKYTHYA 236

Query: 232 PRSQVRL-----------------RAIHVNPREALIRFGN--VPIKNIENAIISLNLSKT 272
           PR  + +                 R +    R ALI   +  + +  +  A  + N    
Sbjct: 237 PRVPLTVFAGAGTDVVRALRIEIERRMAAGERPALIASNDTIMALSGLLPAAYTYNCGAR 296

Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           G     A  L++ ++  DD+  +S+      + GLGIAI NRL +A+
Sbjct: 297 GNQSTLAACLYDALRHFDDTDVTSLLAEGAGSVGLGIAIMNRLRKAS 343


>gi|323694150|ref|ZP_08108329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum
           WAL-14673]
 gi|323501867|gb|EGB17750.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum
           WAL-14673]
          Length = 354

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 174/344 (50%), Gaps = 28/344 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +  +   L +A E L  G  +A PTETVYGL  ++ +  A R++YE K RP+ NPLI H
Sbjct: 14  FTAKEKQYLEEAAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKGRPSDNPLIAH 73

Query: 64  VSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC 121
           V+D   ++   S  P + + LAK FWPGP+TL+      +D+ PL +T  L T   R+P 
Sbjct: 74  VADFEGLRPLVSRIPENGIKLAKAFWPGPMTLI---FPKSDLVPLGTTGGLDTVAVRMPS 130

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               ++LI   G P+A PSAN SG+ S T  +H+    +   I +I+DGG   IG+ESTI
Sbjct: 131 DPVARELIRLAGVPVAAPSANTSGRPSPTRAEHVF-QDMNGRIEMILDGGPVGIGVESTI 189

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGMLKSHYAPRSQ 235
           V+V  E  V +LRPG + +E L  A+  V ++      V     P++PGM   HYAP + 
Sbjct: 190 VDVTEEIPV-MLRPGAVTMEMLHEAVGEVRIDPAILGPVSPGLKPKAPGMKYRHYAPNAD 248

Query: 236 VRLR---------AIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGKLKEAAF 280
           + L           I+    E L     V I      +      +  ++ +  K +  A 
Sbjct: 249 LTLVEGEEEKVVCEINRLAAEKLKEGYKVGIICTDETRECYGGGLVRSIGERAKEETVAH 308

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           NL+  ++  DD GA  I     P   LG AI NRL +AA  R Q
Sbjct: 309 NLYALLREFDDLGAQYIYSEGFPEDHLGQAIMNRLSKAAGYRIQ 352


>gi|212640537|ref|YP_002317057.1| putative translation factor (SUA5) [Anoxybacillus flavithermus WK1]
 gi|212562017|gb|ACJ35072.1| Putative translation factor (SUA5) [Anoxybacillus flavithermus WK1]
          Length = 355

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 175/332 (52%), Gaps = 21/332 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A  +L  G  +A PTETVYGL  ++ +  A+  ++  K RP+ NPLI H++    + 
Sbjct: 29  VTQAAAYLQRGELVAFPTETVYGLGANAMSTAAVENIFVAKGRPSDNPLIVHIATTEQLH 88

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A  + P++  L + FWPGPLTLVL       + P  TA L T   R+P       LI+
Sbjct: 89  DIACDIPPVAYTLIEHFWPGPLTLVLPKKEV--VSPRVTAGLNTVAVRMPNHPIALALIK 146

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSANRSG+ S T  KH+L   +   I  I+DGG + +G+EST+++  C   +
Sbjct: 147 ASGLPIAAPSANRSGRPSPTTAKHVL-DDLNGRIAAIVDGGPTGVGVESTVID--CTTTI 203

Query: 190 -RILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E +++ I  V+++   V++ + P+SPGM  +HYAP+        S   L
Sbjct: 204 PTILRPGGVTKEDIEQVIGVVDIDRALVEKEAVPKSPGMKYTHYAPKAPLVVVHGSSTFL 263

Query: 239 RAIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    R    + G +     ++   A + +   +   L+  A  L++ ++  D +   
Sbjct: 264 QQLVTEKRANGFKVGVLTTEEGRHTYEADVVIPCGRRDDLRTVAQQLYDALRTFDQTNVD 323

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
            I   + PN G+G+AI NRL +AA      ++
Sbjct: 324 MIYSEAFPNEGIGVAIMNRLLKAAGHEQMMEK 355


>gi|194468252|ref|ZP_03074238.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri 100-23]
 gi|194453105|gb|EDX42003.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri 100-23]
          Length = 342

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 176/325 (54%), Gaps = 19/325 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ I+MV+
Sbjct: 11  IAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMVE 70

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
           K+A+  P +   L   FWPG LT++L +     +    T  LKT  FR P C  T  LIE
Sbjct: 71  KYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLIE 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++  +  V
Sbjct: 130 EAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKIAGIVDNGPTRVGVESTVLDMSTDHPV 188

Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPG +  + +++ I S++L  + V +  TP++PGM   HYAP++QV +     +  +
Sbjct: 189 -ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTDWDK 247

Query: 248 ALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GAS 295
            +      P         K ++  ++ +N    S    +++A+  LF+ ++  DD     
Sbjct: 248 VVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNIK 307

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   + P H LG A  NRL ++A 
Sbjct: 308 VIVTQAFPAHDLGGAYMNRLNKSAG 332


>gi|227529625|ref|ZP_03959674.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vaginalis ATCC
           49540]
 gi|227350415|gb|EEJ40706.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vaginalis ATCC
           49540]
          Length = 351

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 176/327 (53%), Gaps = 19/327 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A + +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ + M
Sbjct: 21  DEINQAAKAIQDGKLVAFPTETVYGLGADATNEAAVKNVYLAKGRPSDNPLIVHVASVEM 80

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           V+++ASV P +   L K FWPG LT++L++     +    T  L T  FR P C  T  L
Sbjct: 81  VERYASVIPDNARKLMKKFWPGSLTIILNIKKGV-LSKTVTGGLSTVAFRFPDCQPTLDL 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+  PSAN SG+ S T  +H+    +  +I  IID G +++G+EST++++  + 
Sbjct: 140 IKKAGVPIVGPSANTSGKPSPTTAQHVY-HDLHGKIAGIIDNGPTRVGVESTVLDMSTDH 198

Query: 188 KVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            V ILRPG +    ++  I S++L  + V +  TP++PGM   HYAP +QV +     + 
Sbjct: 199 PV-ILRPGAVTKHQIEEVIGSIDLNHHHVGKNETPKAPGMKYKHYAPNAQVYIVDEGTDW 257

Query: 246 REALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-G 293
           ++ +      P         K ++ A + +N    S    + +A+  LF+ ++  DD   
Sbjct: 258 KQVVDWIKQQPFDVGMMAEEKILQQATLPMNAIQFSLGKNVADASARLFDGLRQFDDQPN 317

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
             +I   + P   LG A  NRL ++A 
Sbjct: 318 VKAIVTQAFPAKDLGRAYMNRLNKSAG 344


>gi|294055966|ref|YP_003549624.1| Sua5/YciO/YrdC/YwlC family protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615299|gb|ADE55454.1| Sua5/YciO/YrdC/YwlC family protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 332

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/322 (33%), Positives = 169/322 (52%), Gaps = 13/322 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++   E L AG  +A+PTETVYGLA ++ +  + R+++E+K RP ++PLI H   I    
Sbjct: 15  IQHCAELLSAGELVAVPTETVYGLAGNALDEDSARKIFEVKGRPFIDPLISHFHSIEAAT 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            H          AK FWPG LT+V +  ST  I  + TA L +A  RVP     +KL+  
Sbjct: 75  SHIEWSDSIQRAAKAFWPGALTIVANKQST--IPDIVTAGLPSAAIRVPGHPVFRKLLSK 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PLA PSAN  G +S T  +H+   ++   +  I+D G    G+ESTI++++ E   R
Sbjct: 133 IDFPLAAPSANPFGYVSPTKAEHV-ERTLGTRLRAILDAGPCLHGVESTILDLRNESAPR 191

Query: 191 ILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRA-----IH 242
           ILR G +  E++  AI   +    +   + S+  +PG+L  HY+P + V L A       
Sbjct: 192 ILRQGPISSESISDAIGRTVSETTNASRDDSSQAAPGLLSQHYSPHTPVSLYAPNSLSAE 251

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
             P +  + F   P     ++  +   S+ G   E A NLF+ ++  D    S +   + 
Sbjct: 252 QFPADCAVVFNCKPTAAHLHS-NTFWFSQNGDTCEVAHNLFDLIQRLDQQNFSHLHIETC 310

Query: 303 PNHGLGIAINNRLERAAAPRNQ 324
           P+ G+G A+N+RL+RAAA R+Q
Sbjct: 311 PDIGIGKAVNDRLKRAAAKRSQ 332


>gi|229917062|ref|YP_002885708.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sp. AT1b]
 gi|229468491|gb|ACQ70263.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sp. AT1b]
          Length = 336

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 181/328 (55%), Gaps = 23/328 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +SN + +    L AG  IA+PTETVYGLA D+ N  AIR+++E K RP+ NPLI H++ I
Sbjct: 7   NSNEIEEGVRLLQAGEIIAMPTETVYGLAGDAMNDVAIRKIFEAKGRPSDNPLIVHIASI 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125
                   S+ P++  L   FWPG LT++L   S      L TA L +   R+P      
Sbjct: 67  EQTSLFVDSIPPVAKRLMDAFWPGALTIILP--SNGRASSLVTAGLDSIGLRMPNHPAAL 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G  LA PSANRSG+ S T  +H+ +  +   I  I+DGG + IG+EST+V+   
Sbjct: 125 ELIRKSGLGLAAPSANRSGRPSPTTAQHV-ADDLNGRIAGIVDGGPTGIGVESTVVDCTG 183

Query: 186 EKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL---- 238
           +  V ILRPGG+   E+E +   ++++     DE + P+SPGM  +HYAP + V L    
Sbjct: 184 D-TVTILRPGGVTREEMEAVIGPVALDANLSNDE-AAPRSPGMKYTHYAPTAPVFLVDGT 241

Query: 239 -----RAIHVNPREALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
                R I    ++A +R G +   +N   A ++ +L  +  ++ AA  L++ ++  D++
Sbjct: 242 REDLERVIEER-KQAGLRIGALVFDENPTPAEVTYSLGTS--MEVAAQRLYDALRRFDET 298

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
               I  ++I   G+ +A+ NRL +AA 
Sbjct: 299 DVDEIYVNTIEPVGVALAVYNRLYKAAG 326


>gi|254557153|ref|YP_003063570.1| SUA5 family translation factor [Lactobacillus plantarum JDM1]
 gi|254046080|gb|ACT62873.1| SUA5 family translation factor [Lactobacillus plantarum JDM1]
          Length = 339

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 172/325 (52%), Gaps = 24/325 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HV+D+  V++ A
Sbjct: 14  AAALLTAGQLVAFPTETVYGLGADATNVDAVKQVYLAKGRPSDNPLIVHVADVETVERFA 73

Query: 75  SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
              PLS     L K FWPGPLT++  L     + P  T  L+TA FR P    T  LI  
Sbjct: 74  Q--PLSEAAKKLIKAFWPGPLTMIFKLKPDA-LAPEVTGGLQTAAFRNPDNEATLALIRA 130

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+  PSAN SG+ S T  +H+L   +  +I  I+D G +K+G+EST++++  ++   
Sbjct: 131 AGTPIVGPSANTSGKPSPTTAQHVL-HDLRGKIAGILDDGPTKVGVESTVLDLSTDQPA- 188

Query: 191 ILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           ILRPG +  E ++R I + ++   + V     P++PGM   HYAP +QV +     +  E
Sbjct: 189 ILRPGAVTPEAIERVIGMPVQTELHHVGAKEVPKAPGMKYKHYAPNAQVYIVDRSEDWPE 248

Query: 248 ALIRFG--NVPIKNIENAIISLN---------LSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
           AL      +VP+  +    I  N          S    ++ A+  LF  ++  D ++   
Sbjct: 249 ALAWAAQQDVPMGVMATDDILTNNQIPDNCEQFSLGEDIQSASRELFAGLRHFDTETEIK 308

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   +  N GLG+A  NRL ++A 
Sbjct: 309 DILCQAFENKGLGLAYMNRLNKSAG 333


>gi|323485388|ref|ZP_08090736.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum
           WAL-14163]
 gi|323401251|gb|EGA93601.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum
           WAL-14163]
          Length = 354

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 173/346 (50%), Gaps = 32/346 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +  +   L +A E L  G  +A PTETVYGL  ++ +  A R++YE K RP+ NPLI H
Sbjct: 14  FTAKEKKYLEEAAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKGRPSDNPLIAH 73

Query: 64  VSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC 121
           V+D   ++   S  P   + LAK FWPGP+TL+      +D+ PL +T  L T   R+P 
Sbjct: 74  VADFEGLRPLVSRIPENGIKLAKAFWPGPMTLI---FPKSDLVPLGTTGGLDTVAVRMPS 130

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               ++LI   G P+A PSAN SG+ S T  +H+    +   I +I+DGG   IG+ESTI
Sbjct: 131 DPVARELIRLAGVPVAAPSANTSGRPSPTRAEHVF-QDMNGRIEMILDGGPVGIGVESTI 189

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGMLKSHYAPRSQ 235
           V+V  E  V +LRPG + +E L  A+  V ++      V     P++PGM   HYAP + 
Sbjct: 190 VDVTEEIPV-MLRPGAVTMEMLHEAVGEVRIDPAILGPVSPGLKPKAPGMKYRHYAPNAD 248

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAI-----------------ISLNLSKTGKLKEA 278
           + L  +     + +     +  + ++                    +  ++ +  K +  
Sbjct: 249 LTL--VEGEEEKVVCEIKRLAAEKLKEGYKVGIICTDETRECYGGGLVRSIGERAKEETV 306

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           A NL+  ++  DD GA  I     P   LG AI NRL +AA  R Q
Sbjct: 307 AHNLYALLREFDDLGAQYIYSEGFPEDHLGQAIMNRLSKAAGYRIQ 352


>gi|52787618|ref|YP_093447.1| YwlC [Bacillus licheniformis ATCC 14580]
 gi|52350120|gb|AAU42754.1| YwlC [Bacillus licheniformis ATCC 14580]
          Length = 349

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  ++++  A+ ++YE K RP+ NPLI H+++
Sbjct: 18  TNCPQIAQAARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAE 77

Query: 67  ISMVKKHASVD-PLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC 121
           I  + + A VD P +  L K FWPGPLTLVL     +LST       TA L T   R+P 
Sbjct: 78  IEQLAEFAEVDSPQAEMLMKRFWPGPLTLVLPCKPGVLSTR-----VTAGLDTVAVRMPD 132

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +LI   G P+A PSAN SG+ S T  +H++ + +   I  ++DGG + +G+EST+
Sbjct: 133 HPVALELIRQAGVPVAAPSANLSGKPSPTKAEHVV-NDLNGRIAGVVDGGPTGVGVESTV 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           V+   E  V ILRPGG+  E L+ A    L  +   DE   P SPGM  +HYAP + + +
Sbjct: 192 VSCTGEIPV-ILRPGGVTKEQLEEAAGPVLIDQGLTDEKKAPMSPGMKYTHYAPEAPLAI 250

Query: 239 RAIHVNPREALI-RFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNLFNYMK 287
               V   + LI ++    +K          ++  A       +  +L+  A  L++ ++
Sbjct: 251 VNGGVEDIQRLIDQYQKDGMKVGVLTTEERADVYQADAVRICGRRDRLETVAAGLYDVLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D+     I   S P  G+G AI NRL +AA  R
Sbjct: 311 SFDEERLDFIFAESFPEEGVGRAIMNRLLKAAGHR 345


>gi|52082226|ref|YP_081017.1| hypothetical protein BL03986 [Bacillus licheniformis ATCC 14580]
 gi|319648100|ref|ZP_08002317.1| YwlC protein [Bacillus sp. BT1B_CT2]
 gi|52005437|gb|AAU25379.1| conserved protein YwlC [Bacillus licheniformis ATCC 14580]
 gi|317389735|gb|EFV70545.1| YwlC protein [Bacillus sp. BT1B_CT2]
          Length = 347

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  ++++  A+ ++YE K RP+ NPLI H+++
Sbjct: 16  TNCPQIAQAARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAE 75

Query: 67  ISMVKKHASVD-PLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC 121
           I  + + A VD P +  L K FWPGPLTLVL     +LST       TA L T   R+P 
Sbjct: 76  IEQLAEFAEVDSPQAEMLMKRFWPGPLTLVLPCKPGVLSTR-----VTAGLDTVAVRMPD 130

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +LI   G P+A PSAN SG+ S T  +H++ + +   I  ++DGG + +G+EST+
Sbjct: 131 HPVALELIRQAGVPVAAPSANLSGKPSPTKAEHVV-NDLNGRIAGVVDGGPTGVGVESTV 189

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           V+   E  V ILRPGG+  E L+ A    L  +   DE   P SPGM  +HYAP + + +
Sbjct: 190 VSCTGEIPV-ILRPGGVTKEQLEEAAGPVLIDQGLTDEKKAPMSPGMKYTHYAPEAPLAI 248

Query: 239 RAIHVNPREALI-RFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNLFNYMK 287
               V   + LI ++    +K          ++  A       +  +L+  A  L++ ++
Sbjct: 249 VNGGVEDIQRLIDQYQKDGMKVGVLTTEERADVYQADAVRICGRRDRLETVAAGLYDVLR 308

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D+     I   S P  G+G AI NRL +AA  R
Sbjct: 309 SFDEERLDFIFAESFPEEGVGRAIMNRLLKAAGHR 343


>gi|315304791|ref|ZP_07874955.1| protein Sua5 [Listeria ivanovii FSL F6-596]
 gi|313626839|gb|EFR95808.1| protein Sua5 [Listeria ivanovii FSL F6-596]
          Length = 345

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 176/336 (52%), Gaps = 19/336 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ +   KA + L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++ 
Sbjct: 13  SNKSVYEKAAKLLQNGECVAFPTETVYGLGADATNQAAIKKIYMAKGRPSDNPLIVHIAS 72

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
              +    AS    ++ L + FWPGPLT++L L   T    +S A L T   R+P    +
Sbjct: 73  REQMDIFVASYPQKAMQLMENFWPGPLTVILPLKKDTLASNVS-AGLSTVGVRMPEHPVS 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI+  G P+A PSANRSG+ S T   H++   +  EI  IIDGG + +G+EST+++  
Sbjct: 132 LALIKEAGLPVAAPSANRSGKPSPTTASHVI-EDLDGEIAGIIDGGETGVGVESTVIDCS 190

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238
            E  V ILRPGG+  E +++ I  VEL      ET  P++PGM  +HYAP++ V L    
Sbjct: 191 AEIPV-ILRPGGITKEQIEQIIGPVELATNDTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249

Query: 239 ---RAIHVNPREAL-IRFGNVPIKN-IENAIISLNLSKTG---KLKEAAFNLFNYMKIAD 290
                  +N  EA   + G +  +  IE    +  +  TG    + E A  L+  ++  D
Sbjct: 250 KEFWQKEINKAEAAHKKIGILATEELIEGLTTNAIIQSTGSISSMAEIANQLYKGLRAFD 309

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
                 I     P   LG A+ NRLE+AA  R  S+
Sbjct: 310 HVEVDMIFAEVYPETELGAAVMNRLEKAAGNRRISE 345


>gi|302527583|ref|ZP_07279925.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. AA4]
 gi|302436478|gb|EFL08294.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. AA4]
          Length = 338

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 170/329 (51%), Gaps = 30/329 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA   L AG  +A PTETVYGL  D+ +P A+ R+Y+ K RP+ +PLI H++    + 
Sbjct: 23  IEKAAGVLRAGGLVAFPTETVYGLGADASDPAAVSRIYQAKGRPSTHPLIVHLAGAGFLD 82

Query: 72  KHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                  +P  L LA+ FWPGPLTLVL       +   +T  L+T   RVP       L+
Sbjct: 83  GWVEKLPEPARL-LAERFWPGPLTLVLR--RGPRVSSAATGGLETVGVRVPDHPVALALL 139

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +G   A PSANR G +S T  +H+  + +   +  ++DGG  ++G+ESTIV+   +  
Sbjct: 140 SAFGGGAAAPSANRFGSVSPTTAEHV-RAELGDAVDFVLDGGPCQVGVESTIVDATSD-T 197

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           + +LRPGG+  E L+  +   L+  V  TS  + PG   SHYAPR++V L    V P + 
Sbjct: 198 LSVLRPGGVPREDLEAVLGGPLD--VPSTSPIRVPGQHPSHYAPRAKVVL----VEPDQV 251

Query: 249 LIRFGNVPIKNIENAI-ISLNLSKTGKLKEA-------------AFNLFNYMKIADDSGA 294
           +    +   + + + + + L  S+ G   EA             A  L+ +++  D  G 
Sbjct: 252 VAEAAHA--RKLGHRVGVFLPPSQNGGAPEAHAVVAVPESTAEYARGLYGFLRELDRQGC 309

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRN 323
             I  S     GLG+AI NRL RAA PR+
Sbjct: 310 DLIVASLPEETGLGLAIANRLRRAAGPRS 338


>gi|148284357|ref|YP_001248447.1| putative translation factor protein [Orientia tsutsugamushi str.
           Boryong]
 gi|146739796|emb|CAM79671.1| putative translation factor protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 322

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/313 (34%), Positives = 164/313 (52%), Gaps = 13/313 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A +F++ G  +  PTETVYG+  D+ N  A + +Y+IK RP  NPLI HVS+I   +   
Sbjct: 15  AAQFIEQGKLVIFPTETVYGIGADATNDNACQSIYKIKNRPMNNPLIIHVSNIQAAQTIG 74

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
             + L++ LA L WPGP++LV+ L  +  I   +TANL T   R+P       L++    
Sbjct: 75  IFNNLAIKLATL-WPGPISLVVPLNQSAGISRTATANLDTVAIRIPSHKVALMLLQLTQK 133

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSAN SG +S T  +H            I+ G  S  GLESTI++   ++   ILR
Sbjct: 134 PIAAPSANPSGYLSPTTYQHANIHFQNSPDIFILKGAQSTYGLESTIIDTTADRPT-ILR 192

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
            G +  E +K                 ++PGM+  HY+P +++RL A  + P+E  + +G
Sbjct: 193 HGFITTEIIKTITGQNPIIAEKHNKLLKAPGMMLKHYSPITKIRLNATKLLPKEVGLNYG 252

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS------SIAFSSIPNHGL 307
                N       LNLS    L  AA NL++ +   D+   +      +IA + IPN G+
Sbjct: 253 ----PNTLTGKYCLNLSPNSNLMNAAANLYHMLHQLDNYAQNPINEVETIAIAQIPNIGI 308

Query: 308 GIAINNRLERAAA 320
           GIAIN++L RA++
Sbjct: 309 GIAINDKLNRASS 321


>gi|332653079|ref|ZP_08418824.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcaceae bacterium D16]
 gi|332518225|gb|EGJ47828.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcaceae bacterium D16]
          Length = 341

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 178/345 (51%), Gaps = 35/345 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    +T+ +    A    D GL + IPTETVYGL  +  N  A+  ++E K RP  NPL
Sbjct: 1   MNTKRLTEHDIDEAAAILRDGGL-LGIPTETVYGLGANGLNEEAVAHIFEAKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118
           I H+ D S ++++    PL+ + LA+ +WPGP+T++   L   DI P + TA L T   R
Sbjct: 60  ILHIPDASWLERYCKDIPLTAYQLAEAYWPGPMTMI---LKRKDIVPDAVTAGLDTVGMR 116

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
            P     +++I   G P+A PS N SG+ S T  +H+L     K I  I+DGG   +G+E
Sbjct: 117 CPAHPLCREIIAASGVPVAAPSGNTSGRPSPTTAQHMLEDMDGK-IDAIVDGGSCSVGVE 175

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST--------PQSPGMLKSH 229
           STI+++  E   R+LRPGG+ +E L+  +    E  VD   T        P++PGM   H
Sbjct: 176 STIIDL-TETPARLLRPGGITLEQLEAVLG---EVAVDPAVTRLMGAGEQPKAPGMKYRH 231

Query: 230 YAPRSQVRLR-----------AIHVNPREALIRFGN-VPI--KNIENAIISLNLSKTGKL 275
           YAP++ V +            A H    + +I F   +P+  +  E   + ++L   G  
Sbjct: 232 YAPKAPVTVVTGDPKKSAEYIASHAGAEDGIICFDEFLPLFTRRSETRPV-MDLGPAGDK 290

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +E A ++F+ ++  D +   +I        G+G+AI NRL +AA 
Sbjct: 291 EEQARHIFDALRSFDHTSVPAIWAQCPDTTGIGLAIANRLNKAAG 335


>gi|324329274|gb|ADY24534.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 346

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEQLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G       +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|46908713|ref|YP_015102.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47094309|ref|ZP_00232012.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b
           H7858]
 gi|226225089|ref|YP_002759196.1| yeast translation initiation protein [Listeria monocytogenes
           Clip81459]
 gi|254825336|ref|ZP_05230337.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           J1-194]
 gi|254853930|ref|ZP_05243278.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           R2-503]
 gi|254932217|ref|ZP_05265576.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262]
 gi|254993431|ref|ZP_05275621.1| yeast translation initiation protein [Listeria monocytogenes FSL
           J2-064]
 gi|255519763|ref|ZP_05387000.1| yeast translation initiation protein [Listeria monocytogenes FSL
           J1-175]
 gi|300764959|ref|ZP_07074947.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017]
 gi|46881985|gb|AAT05279.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017319|gb|EAL08149.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b
           H7858]
 gi|225877551|emb|CAS06265.1| Putative yeast translation initiation protein [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607318|gb|EEW19926.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           R2-503]
 gi|293583772|gb|EFF95804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262]
 gi|293594579|gb|EFG02340.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           J1-194]
 gi|300514259|gb|EFK41318.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017]
 gi|328465145|gb|EGF36413.1| translation initiation protein [Listeria monocytogenes 1816]
 gi|328471149|gb|EGF42053.1| translation initiation protein [Listeria monocytogenes 220]
 gi|332312971|gb|EGJ26066.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
           Scott A]
          Length = 345

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 174/334 (52%), Gaps = 33/334 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            ++A + L +G  +A PTETVYGL  D+ N  A++++YE K RP+ NPLI H++    + 
Sbjct: 18  FQEAAKLLRSGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMD 77

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              +  P+ ++ L + FWPGPLT++L L   +    +S A L T   R+P    +  LI+
Sbjct: 78  PFVASYPVKAIQLMEKFWPGPLTVILPLKKDSLATNVS-AGLSTVGVRMPEHPVSLALID 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++   +  V
Sbjct: 137 AANIPVAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLDIPV 195

Query: 190 RILRPGGLEIETLKRAIS-VELEY-CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPGG+  E +++ I  V++      ET  P++PGM  +HYAP++ V L        E
Sbjct: 196 -ILRPGGVTKEQIEQIIGPVDIATNNTKETEKPKAPGMKYTHYAPKAPVYL-------IE 247

Query: 248 ALIRFGNVPIKNIENA------------IISLNLSKT-------GKLKEAAFNLFNYMKI 288
             I+F    I   E A            I  LN S T         L E A +L+  ++ 
Sbjct: 248 GSIQFWQSEINKAEAANKKLGILATKELINQLNTSGTIEITGSINALDEIATSLYKGLRA 307

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            D +    I     P   LG AI NRLE+AA  R
Sbjct: 308 FDHADVDVIFAEVYPETELGAAIMNRLEKAAGNR 341


>gi|326792742|ref|YP_004310563.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM
           5427]
 gi|326543506|gb|ADZ85365.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM
           5427]
          Length = 344

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 182/346 (52%), Gaps = 34/346 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   ITD+ AL +A   L  G  +A PTETVYGL  ++ N  A++ +Y+ K RP+ NPL
Sbjct: 1   MKTSIITDTTALLEAANILQQGGLVASPTETVYGLCANALNENAVKNIYKAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++D+ M+      V P++  L + FWPGPLTL+    +++ +  + T  L T   R 
Sbjct: 61  IVHIADLEMLSPLVEEVPPMARTLMEHFWPGPLTLIFK--ASSLVPKVVTGGLDTVAIRF 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++LI+  G PLA PSAN SG+ S TN   ++   +  +I  II G  SK G+ES
Sbjct: 119 PSHPIIQQLIKASGLPLAAPSANTSGKPSPTNASRVI-EDLEGKIDAIIVGDSSKYGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLE---IETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           T+V+   E    ILRPGG+    IE +  +++++  + + + E   P++PGM   HY+P 
Sbjct: 178 TVVDTTGE-VATILRPGGITAEMIEAVLGSVTIDPAISHALKEGELPKAPGMKYIHYSPN 236

Query: 234 SQVRLRAIHVNPREALI----------------RFGNVPIKNIEN---AIISLNLSKTGK 274
           ++V    I V+  E+L+                + G +     +    A + ++   T  
Sbjct: 237 AEV----IIVDGEESLVISKMNELIVSAHSQGKKVGVLATDETKEHFKADLVISAGTTKN 292

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L   A +LF  ++  DD+    +   + P  G+G AI NRLE++A 
Sbjct: 293 LTTIAAHLFEALRTFDDADIDIVYSLAFPKKGIGNAIMNRLEKSAG 338


>gi|212697122|ref|ZP_03305250.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675897|gb|EEB35504.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 345

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 172/332 (51%), Gaps = 25/332 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-D 66
           D N L+ A + +  G  +A PTETVYGL  D  NP A R++++ K RP  NPLI H+  D
Sbjct: 14  DENILKHAAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPEDNPLILHIDED 73

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + +    VD  +  L K  WPGPLT++L    ++ I  + T    T   R P     +
Sbjct: 74  YKLDELVEEVDDRTKFLIKNLWPGPLTVILK--KSSKIPDIITGGGDTVAVRRPKDKLAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I+    P+A PSAN SG+ S TN K +    +   IPLIIDGG S IG+EST++++  
Sbjct: 132 EFIKFCNRPIAAPSANISGRPSPTNAKDVF-YDMDGRIPLIIDGGSSDIGIESTVIDMSL 190

Query: 186 EKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVR------ 237
           E    ILRPG    E +K+ I +V L +  VD+T  P+SPG    HYAP++Q++      
Sbjct: 191 ENPC-ILRPGYYTYEYIKKFIPNVCLDDSLVDDTKVPRSPGQKYKHYAPKAQMKVFVGEK 249

Query: 238 ---------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                    L+  +   +  ++ F     K   ++ I+L+L     L E +  LF  ++ 
Sbjct: 250 SVEKINDLALKYKNDGKKVGILVFNKYTEKF--SSYITLSLGDKENLIEMSHVLFEALRD 307

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D  G   I    +   GLG +I NR++++A+
Sbjct: 308 LDRKGVDIILAQGVEEIGLGKSIMNRMKKSAS 339


>gi|238855955|ref|ZP_04646241.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii 269-3]
 gi|260664672|ref|ZP_05865524.1| Sua5 family translation factor [Lactobacillus jensenii SJ-7A-US]
 gi|282934362|ref|ZP_06339629.1| hypothetical protein HMPREF0886_0956 [Lactobacillus jensenii 208-1]
 gi|238831428|gb|EEQ23779.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii 269-3]
 gi|260561737|gb|EEX27709.1| Sua5 family translation factor [Lactobacillus jensenii SJ-7A-US]
 gi|281301572|gb|EFA93849.1| hypothetical protein HMPREF0886_0956 [Lactobacillus jensenii 208-1]
          Length = 333

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 174/334 (52%), Gaps = 28/334 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I   + + +A EFL  G  +A PTETVYGL   +    +++ +Y+ K RP+ NPLI  V
Sbjct: 4   QILKKDQIDQAVEFLKKGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLIVTV 63

Query: 65  SDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           SD +M+K++A   P  +  L K FWPGPLTL+L L+    +    T  LKTA FR P   
Sbjct: 64  SDENMMKRYAKFVPERAEKLIKHFWPGPLTLLL-LVKEGSLPDAVTGGLKTAAFRCPNDE 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T +LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI++
Sbjct: 123 LTHELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLESTIID 181

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +  E  + +LRPG +  E L   +  ++      V + + P++PGM   HYAP + V + 
Sbjct: 182 LSVETPI-VLRPGQITPEELSEVLGEKVLINTGKVSDKAIPKAPGMKYRHYAPNAPVWV- 239

Query: 240 AIHVNPREALIRFGNVPIKN------IENAIISLNLSKTGK------LKEAAFNLFNYMK 287
                  +    FG +  K+      +++ +  L+L    K      LK+A  NLF+ ++
Sbjct: 240 ------VDDTNDFGKIEFKSDTAVAALDSVLEKLDLPAENKFSLGKDLKDADHNLFSALR 293

Query: 288 IADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
             DD     +I           +A  NRL +AAA
Sbjct: 294 FFDDEDEIKTIYVQGFDEGEKSLAYMNRLNKAAA 327


>gi|57640883|ref|YP_183361.1| putative translation factor Sua5p-like protein [Thermococcus
           kodakarensis KOD1]
 gi|57159207|dbj|BAD85137.1| putative translation factor Sua5p homolog [Thermococcus
           kodakarensis KOD1]
          Length = 339

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 170/329 (51%), Gaps = 23/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++ A   +  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPLI H++ I
Sbjct: 12  DEKKIKVAARLILEGKLVAFPTETVYGLGADALNEGAVRRIFEAKGRPADNPLIIHIASI 71

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
             ++K A   P     LA+ FWPGPLTLVL      ++  ++T  L T   R+P      
Sbjct: 72  DDLEKVAREVPEKAKLLAERFWPGPLTLVLP--KREEVPLVTTGGLDTVAVRMPAHPIAL 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     PLA PSAN SG+ S T+ +H++     K I  IIDGG + +G+EST+V++  E
Sbjct: 130 ALIRASTPLAAPSANISGKPSPTSAEHVIDDFYGK-IEGIIDGGETWVGVESTVVDLTEE 188

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQV------- 236
             V +LRPGG+ +E L++ I  + +   V   +    ++PGM   HYAP + V       
Sbjct: 189 PPV-LLRPGGIPLEELEKVIGPIRIHPAVKGKKIDLAKAPGMKYKHYAPNAMVIVVEGTP 247

Query: 237 --RLRAIHV---NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
             R R I       R+   R G +    +E       L KT  L+E A NLF  ++  D 
Sbjct: 248 ENRRRKIQELVDEYRKKGHRVGVMATFEVEADEFYF-LGKT--LEEVARNLFKALRELDK 304

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   I    +   G+G+A+ NRL +AA 
Sbjct: 305 RGVDVIIAEGVEEVGVGLAVMNRLRKAAG 333


>gi|42784497|ref|NP_981744.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987]
 gi|42740429|gb|AAS44352.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987]
          Length = 346

 Score =  162 bits (410), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLESVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G       +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLADEKKEEGFKVGVLTTEEYQHVYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|323702620|ref|ZP_08114282.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532439|gb|EGB22316.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 354

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 167/337 (49%), Gaps = 28/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N + +A + +  G  +A PTETVYGL  +  + TA+  +Y  K RP+ NPLI HV+D 
Sbjct: 17  DQNVIDRAAQIIKNGGLVAFPTETVYGLGANGLDGTAVAGIYRAKGRPSDNPLILHVADF 76

Query: 68  SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +M +   A + P++  L   FWPGPLTLV+       I    T  L T   R+P      
Sbjct: 77  AMAEALSAGLPPVAGMLMDKFWPGPLTLVVP--RANHIPGQVTGGLDTVGIRMPSHPVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G P+A PSANRSG+ S T   H+  + +   I  I+DGG + +GLEST+++V  
Sbjct: 135 ALIKAAGVPIAAPSANRSGRPSPTRAAHV-QADLQGRIDAILDGGPTGVGLESTVLDVSG 193

Query: 186 EKKVRILRPGGLEIETLKR---AISVE---LEYCVDETSTPQSPGMLKSHYAPRSQVRL- 238
           E+ V ILRPGG+  E L      ++++   L   +     P+SPGM  +HYAP + + L 
Sbjct: 194 EQPV-ILRPGGVTYEQLADLLPRVTIDPSILGKKLSRDQAPRSPGMKYTHYAPAAPLTLF 252

Query: 239 --------RAIHVNPREALIRFGNVPIKNIEN-------AIISLNLSKTGKLKEAAFNLF 283
                   +AI     E L R   V I   E          + L + +      AA  LF
Sbjct: 253 EGEPARVVQAIARRAAEQLARGSRVGILAFEENAPYYPRGAVILTMGQQKNPATAANMLF 312

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D      I    +   G+G+AI NRL RAA 
Sbjct: 313 ALLRQFDRLKVEVILAEGMEPKGIGLAIMNRLRRAAG 349


>gi|108760186|ref|YP_629797.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
 gi|108464066|gb|ABF89251.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
          Length = 333

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/326 (34%), Positives = 171/326 (52%), Gaps = 22/326 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            +L +A E L  G  +A+PTETVYGL+ ++ +  A+RR++ IK RPA +PLI H+  +  
Sbjct: 18  ESLERAVELLRHGGVVALPTETVYGLSANAEDELAVRRVFAIKGRPATHPLIVHIPGVEH 77

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +   A  V   +  LA+ FWPGPLTLVL    T       T    T   RVP       +
Sbjct: 78  LNTWAREVPEAARKLAEAFWPGPLTLVLP--RTARATDAVTGGQDTVALRVPNHPVALAV 135

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G  LA PSANR G++S T  +H+    +  ++ L++DGG   +G+ESTIV++   +
Sbjct: 136 LQKLGGGLAAPSANRFGKVSPTTAEHV-REDLGGDVDLVLDGGPCTVGVESTIVDLSSNE 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              ILRPGGL  E ++R +  ++   V  +S  +  G L+SHYAPR+ V L      P +
Sbjct: 195 PA-ILRPGGLAAEDVERVLGRKVP--VRTSSKVRVSGSLESHYAPRAGVVL----TEPVQ 247

Query: 248 ALIRFGNVPIKNIENAII---SLNLSKT-------GKLKEAAFNLFNYMKIADDSGASSI 297
           A+ R   +  + +   ++   SL L           +   AA  L+  ++ AD  G   +
Sbjct: 248 AVARVQELRGQGLRVGVLGPASLALPPDVPRFDVPDEPAGAARVLYARLREADTQGHDVL 307

Query: 298 AFSSIPNHGLGIAINNRLERAAAPRN 323
                   GLGIA+ +RL RAAAPR 
Sbjct: 308 VACLPAESGLGIAVRDRLSRAAAPRG 333


>gi|311032025|ref|ZP_07710115.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13]
 gi|311033339|ref|ZP_07711429.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13]
          Length = 350

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 165/315 (52%), Gaps = 23/315 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  ++ +  A+ +++E K RP+ NPLI H+S +  + +     P S H L
Sbjct: 34  VAFPTETVYGLGANALSDQAVLKIFEAKGRPSDNPLIVHISKLEQLAELVDNVPESAHKL 93

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANR 142
            + FWPGPLTLV  L     +    TA L+T   R+P     + LIE  G PLA PSAN 
Sbjct: 94  MEAFWPGPLTLV--LTKKEGVSQYVTAGLETLAVRMPDHSVARALIEISGLPLAAPSANL 151

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ S T  KH+    +   I  I+DGG + +GLEST+V+   E  + ILRPGG+  E L
Sbjct: 152 SGKPSPTTAKHV-EEDLIHRIAGIVDGGATGVGLESTVVDCTAETPM-ILRPGGVTKEEL 209

Query: 203 KRAIS-VELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP-- 256
           ++ +  V+++   +  +E   P+SPGM  +HYAP + V L     +  E  I+   +   
Sbjct: 210 EKVVGKVDVDPALFSQEELHKPKSPGMKYTHYAPIAPVYLVEGSASFMEQTIKGAQLKGH 269

Query: 257 ----------IKNIE-NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
                     I  I+   I +++      L   A  L++ ++  + +    I   + P  
Sbjct: 270 KVGLLATEETIAQIQATEITAISCGTKNDLATVASQLYDGLRAFNATDVDVIFSETFPRT 329

Query: 306 GLGIAINNRLERAAA 320
           G+G AI NRLE+AA 
Sbjct: 330 GVGAAIMNRLEKAAG 344


>gi|317133627|ref|YP_004092941.1| Sua5/YciO/YrdC/YwlC family protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471606|gb|ADU28210.1| Sua5/YciO/YrdC/YwlC family protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 343

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 167/314 (53%), Gaps = 27/314 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +AIPTETVYGLA ++ +  A+R ++  K RP  NPLI HV+    + ++A+  P  +  L
Sbjct: 31  VAIPTETVYGLAANALDEAAVRAIFAAKGRPQDNPLIVHVAHPDWLPRYAASIPDAARKL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
              FWPGPLT+VL   ++  + P  +A L TA FR P       +IE  G PLA PSANR
Sbjct: 91  VNAFWPGPLTIVLP--ASPQLAPAVSAGLPTAGFRCPSHPVATAVIEAAGVPLAAPSANR 148

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG  S T   H+L + +   I  ++D G   +G+EST+V +  +    ILRPGG+    L
Sbjct: 149 SGSPSPTAAAHVL-ADLAGRIDAVVDAGPCAVGVESTVVALHGDVP-HILRPGGITPAQL 206

Query: 203 KRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF----- 252
           K  + + E++  V    D+ +   SPGM   HYAP++ V    I   P +  +R+     
Sbjct: 207 KAVLGAAEVDPAVLEGLDDAAKAASPGMKYKHYAPKASVT---ILKGPLDVFVRYTRAHA 263

Query: 253 --GNVPI-KNIENAIISLNLSKTGKLKEAAFN---LFNYMKIADDSGASSIAFSSIPNH- 305
             G   +  + E   I L     G  ++AA     LF  ++  D+ GA ++ F+  P   
Sbjct: 264 VDGTFALCFDGEETRIGLPCVSYGPARDAAAQARELFGALRALDERGARAV-FARAPEET 322

Query: 306 GLGIAINNRLERAA 319
           G+G+A+ NRL RAA
Sbjct: 323 GMGLAVYNRLLRAA 336


>gi|301056793|ref|YP_003795004.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis CI]
 gi|300378962|gb|ADK07866.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 346

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +   +I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIHNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|304385307|ref|ZP_07367652.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM
           20284]
 gi|304328514|gb|EFL95735.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM
           20284]
          Length = 340

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 175/332 (52%), Gaps = 20/332 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S  L  A   +  G  +A PTETVYGL  D+ NP A++++Y+ K RP+ NPLI HV+
Sbjct: 4   IFQSENLADAAAAIQRGELVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIVHVT 63

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
             + V + A +D  S  L   FWPGPLT++L +     + P+ T  L TA FR P    T
Sbjct: 64  GPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKPHA-LDPVVTGGLTTAAFRNPDTPLT 122

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLIE  G PL  PSAN SG+ S T   H++   +  +I  ++DGG +KIG+EST++++ 
Sbjct: 123 LKLIEQAGVPLVGPSANTSGKPSPTKPAHVM-HDLNGKIAGVLDGGETKIGVESTVLDMS 181

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL--RA 240
                 +LRPG +  E L   +  V+ ++  V +   P++PGM   HYAP +QV +   A
Sbjct: 182 GAVP-SVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIVKDA 240

Query: 241 IHVNPREALIRFGNVPIKNIENAII----------SLNLSKTGK-LKEAAFNLFNYMKIA 289
                 + + +    P+  +  + I          +++    G+  + A+ +LF+ ++  
Sbjct: 241 QWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGLRTF 300

Query: 290 DDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320
           D      + F+ +    G+G A  NRL+++A 
Sbjct: 301 DGKPQIKVIFAQAFDPTGIGAAYMNRLQKSAG 332


>gi|159035694|ref|YP_001534947.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
 gi|157914529|gb|ABV95956.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
          Length = 317

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 186/323 (57%), Gaps = 17/323 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++  + + +A   L AG  +A PTETVYGL  ++ +  A+ R++  K RP+ +PLI H++
Sbjct: 1   MSADSGVAEAAAVLRAGGLVAFPTETVYGLGANALDAQAVARIFAAKARPSFDPLITHLA 60

Query: 66  DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
           + + ++K   +V P    LA+ FWPGPLTL++D  +   I P+ T+ L+T   RVP    
Sbjct: 61  EAAELEKLVGTVSPAVAVLAERFWPGPLTLIVDRPAA--IPPIVTSGLETMAVRVPDHAA 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + LI   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+V
Sbjct: 119 ARGLIAAAGVPVAAPSANRFGQLSPTWAEHVV-AGLGAAVDVVLDGGPTRCGIESTIVDV 177

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + E+ V +LR G L +E+L+ A+   +      +  P +PG L +HYAPR+ +RL     
Sbjct: 178 RGERPV-VLRLGALPVESLEEAVG-PVTVRPGSSGQPVAPGTLAAHYAPRTPLRL-VTGA 234

Query: 244 NP------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
            P      R   + F + P    E A + + LS  G L EAA  LF+ +   D +G   I
Sbjct: 235 GPMDGGGARRGFLGFRSRPAG--EWAAVEV-LSSDGDLTEAAARLFDALHRLDGAGVDEI 291

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
               +P  G+G A+N+RL RAAA
Sbjct: 292 VVEPVPEVGVGRAVNDRLRRAAA 314


>gi|14521794|ref|NP_127270.1| sua5 related protein [Pyrococcus abyssi GE5]
 gi|5459014|emb|CAB50500.1| Putative translation factor, SUA5 related protein [Pyrococcus
           abyssi GE5]
          Length = 340

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 26/329 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A  F+  G  +A PTETVYGL  ++ +  A++R++E K RPA NPLI H++    ++
Sbjct: 16  IRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIASFEQLE 75

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC-GFTKKLI 128
             A   P     LAK FWPGPLTLV   L  +++ P + T  L T   R+P      KLI
Sbjct: 76  VLAKEIPEEAEMLAKRFWPGPLTLV---LPKSEVVPRVITGGLDTVAVRMPAHEIALKLI 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSAN SG+ S T+  H+ +     +I  IIDGG ++IG+EST++++  E  
Sbjct: 133 ELSERPIAAPSANISGKPSPTSAHHV-AEDFYGKIECIIDGGETRIGVESTVIDL-TEWP 190

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             +LRPGGL +E +++ I  + +   V      T ++PGM   HYAP ++V    +   P
Sbjct: 191 PVLLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEV---IVVEGP 247

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGK------------LKEAAFNLFNYMKIADDSG 293
           R+ + R     I   +     + +  +G             ++E A NLF  ++  D +G
Sbjct: 248 RDKVRRKIEELIAKFKEEGKKVGVIGSGSYDADEVFYLGDTVEEIARNLFKALRHMDRTG 307

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
              I    +   GLG+A+ NRL +A+  R
Sbjct: 308 VDVILAEGVEEKGLGLAVMNRLRKASGYR 336


>gi|300117839|ref|ZP_07055606.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1]
 gi|298724703|gb|EFI65378.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1]
          Length = 346

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +   +I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|325847835|ref|ZP_08170057.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480853|gb|EGC83906.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 345

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 172/332 (51%), Gaps = 25/332 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-D 66
           D N L+ A + +  G  +A PTETVYGL  D  NP A R++++ K RP  NPLI H+  D
Sbjct: 14  DENILKHAAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPEDNPLILHIDED 73

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + +    VD  +  L K  WPGPLT++L    ++ I  + T    T   R P     +
Sbjct: 74  YKLDELVEKVDERTKFLIKNLWPGPLTVILK--KSSKIPDIITGGGDTVAVRRPKDKLAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I+    P+A PSAN SG+ S TN K +    +   IPLIIDGG S IG+EST++++  
Sbjct: 132 EFIKFCDRPIAAPSANISGRPSPTNAKDVF-YDMNGRIPLIIDGGSSDIGIESTVIDMSL 190

Query: 186 EKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVR------ 237
           E    ILRPG    E +K+ I +V L +  +D+T  P+SPG    HYAP++Q++      
Sbjct: 191 ENPC-ILRPGYYTYEYIKKFIPNVCLDDSLLDDTKVPRSPGQKYKHYAPKAQMKVFVGEK 249

Query: 238 ---------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                    L+  +   +  ++ F     K   ++ I+L+L     L E +  LF  ++ 
Sbjct: 250 SVEKINDLALKYKNDGKKVGILVFNKYTEKF--SSYITLSLGDKENLIEMSHVLFEALRD 307

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D  G   I    +   GLG +I NR++++A+
Sbjct: 308 LDRKGVDIILAQGVEEIGLGKSIMNRMKKSAS 339


>gi|270291031|ref|ZP_06197254.1| translation factor [Pediococcus acidilactici 7_4]
 gi|270280427|gb|EFA26262.1| translation factor [Pediococcus acidilactici 7_4]
          Length = 340

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 177/333 (53%), Gaps = 22/333 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S  L  A   +  G  +A PTETVYGL  D+ NP A++++Y+ K RP+ NPLI HV+
Sbjct: 4   IFQSENLADAAAAIQRGDLVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIVHVT 63

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTANLKTACFRVP-CGF 123
             + V + A +D  S  L   FWPGPLT++L + L   D  P+ T  L TA FR P    
Sbjct: 64  GPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKLHALD--PVVTGGLTTAAFRNPDTPL 121

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T KLIE  G PL  PSAN SG+ S T   H++   +  +I  ++DGG +KIG+EST++++
Sbjct: 122 TLKLIEQAGVPLVGPSANTSGKPSPTKPAHVM-HDLDGKIAGVLDGGETKIGVESTVLDM 180

Query: 184 QCEKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL--R 239
                  +LRPG +  E L   +  V+ ++  V +   P++PGM   HYAP +QV +   
Sbjct: 181 SGTVP-SVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIVKD 239

Query: 240 AIHVNPREALIRFGNVPIKNIENAII----------SLNLSKTGK-LKEAAFNLFNYMKI 288
           A      + + +    P+  +  + I          +++    G+  + A+ +LF+ ++ 
Sbjct: 240 AQWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGLRT 299

Query: 289 ADDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320
            D +    + F+ +    G+G A  NRL+++A 
Sbjct: 300 FDGNPQIKVIFAQAFDPTGIGAAYMNRLQKSAG 332


>gi|238061924|ref|ZP_04606633.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. ATCC 39149]
 gi|237883735|gb|EEP72563.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. ATCC 39149]
          Length = 321

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 180/319 (56%), Gaps = 14/319 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A   L AG  +A PTETVYGL  ++ +  A  R++E K+RP+ +PLI H++D +
Sbjct: 4   GSGIAEAASVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKQRPSFDPLITHLADAA 63

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            +       P ++  LA+ FWPGPLTL++D  +   I P+ T+ L+T   RVP     + 
Sbjct: 64  DLTALVGPVPGAVAALAERFWPGPLTLIVDRPAA--IPPIVTSGLETMAVRVPDEASARA 121

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+ +  
Sbjct: 122 LIAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGG 180

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAI 241
           + V +LR G L +E L+ A+   +      +  P +PG L +HYAPR+ +R+      A 
Sbjct: 181 QPV-VLRLGALAVEALEEAVG-PVTVRPGSSGQPVAPGTLAAHYAPRTPLRVVGGAEPAA 238

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
               R  L+ F   P+     A+    LS  G L  AA  LF+ +   D +G + I    
Sbjct: 239 GDGIRRGLLAFRERPVGGDWAAVEV--LSPGGDLTVAAARLFDALHRLDAAGVAEIVAER 296

Query: 302 IPNHGLGIAINNRLERAAA 320
           +P+ G+G AIN+RL RAAA
Sbjct: 297 VPDVGVGRAINDRLGRAAA 315


>gi|297170667|gb|ADI21691.1| putative translation factor (SUA5) [uncultured Verrucomicrobiales
           bacterium HF0130_14P10]
          Length = 337

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 179/343 (52%), Gaps = 33/343 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ         L      L +G  +A+PTETVYGLA  + N  A+ +++E K+RP  +PL
Sbjct: 1   MQKHYGVSPEELSHVAGLLHSGQIVALPTETVYGLACLALNKLAVAKVFEAKQRPINDPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119
           I HVSD++  +     D  ++ L+++FWPGPLTLV   L  T I P + T+ L T   R 
Sbjct: 61  IIHVSDLTEAQSVCRPDHRAILLSEVFWPGPLTLV---LPKTKIVPTIVTSGLSTVAVRS 117

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++++     PLA PSAN  G+IS T  +HI   S   E P ++DGG +K+G+ES
Sbjct: 118 PANPVFREILNLVSAPLAAPSANPFGKISPTRAEHI-KQSFGDEHPPVVDGGPTKLGIES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV-----ELEYCVDETSTPQSPGMLKSHYAPR 233
           T+V++    + RILRPG ++ E +   +       EL+   D+   P SPG+L  HY P 
Sbjct: 177 TVVDLSS-SRTRILRPGPIDREAISAILGEEPEIPELKASSDKPKKPLSPGLLAKHYQPE 235

Query: 234 SQVRLRAIHVNPREALIRF----GNVPIKNI--------ENAIIS-----LNLSKTGKLK 276
           S +++     +  E L+ F     ++P            EN   S     ++LS+ G  +
Sbjct: 236 SPLQV----FSNTEDLMAFLKMEPSIPAATFVITHSPLNENCFPSKGLKFMHLSEFGDPE 291

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           E A NLF  ++ AD      I    +P  G+G A+N+RL +A+
Sbjct: 292 EIAKNLFARLREADAHSPPLILCPLLPETGIGSAVNDRLRKAS 334


>gi|30265348|ref|NP_847725.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames]
 gi|47778411|ref|YP_022236.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188160|ref|YP_031413.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne]
 gi|49480413|ref|YP_039318.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140237|ref|YP_086594.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L]
 gi|65317301|ref|ZP_00390260.1| COG0009: Putative translation factor (SUA5) [Bacillus anthracis
           str. A2012]
 gi|165871252|ref|ZP_02215901.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488]
 gi|170688185|ref|ZP_02879396.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465]
 gi|170709376|ref|ZP_02899789.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389]
 gi|177651870|ref|ZP_02934453.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174]
 gi|206978500|ref|ZP_03239359.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97]
 gi|217962814|ref|YP_002341392.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187]
 gi|218906503|ref|YP_002454337.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820]
 gi|227818088|ref|YP_002818097.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC
           684]
 gi|228917934|ref|ZP_04081470.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930333|ref|ZP_04093337.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228949046|ref|ZP_04111318.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229094437|ref|ZP_04225509.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42]
 gi|229124829|ref|ZP_04254007.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201]
 gi|229142067|ref|ZP_04270592.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26]
 gi|229199451|ref|ZP_04326114.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293]
 gi|229600982|ref|YP_002869540.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248]
 gi|254686252|ref|ZP_05150111.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724247|ref|ZP_05186031.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A1055]
 gi|254735253|ref|ZP_05192962.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755794|ref|ZP_05207826.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Vollum]
 gi|254762134|ref|ZP_05213980.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str.
           Australia 94]
 gi|30260026|gb|AAP29211.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames]
 gi|47552116|gb|AAT34711.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182087|gb|AAT57463.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne]
 gi|49331969|gb|AAT62615.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51973706|gb|AAU15256.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L]
 gi|164712919|gb|EDR18447.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488]
 gi|170125724|gb|EDS94638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389]
 gi|170667878|gb|EDT18630.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465]
 gi|172082574|gb|EDT67638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174]
 gi|206743290|gb|EDZ54738.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97]
 gi|217063465|gb|ACJ77715.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187]
 gi|218539161|gb|ACK91559.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820]
 gi|227004860|gb|ACP14603.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC
           684]
 gi|228584027|gb|EEK42182.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293]
 gi|228641356|gb|EEK97662.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26]
 gi|228658620|gb|EEL14282.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201]
 gi|228688974|gb|EEL42801.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42]
 gi|228810619|gb|EEM56968.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228829319|gb|EEM74952.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841731|gb|EEM86842.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229265390|gb|ACQ47027.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248]
          Length = 346

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +   +I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|222100697|ref|YP_002535265.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359]
 gi|221573087|gb|ACM23899.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359]
          Length = 335

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 167/322 (51%), Gaps = 12/322 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  +LR+A + L  G  +  PTETVYG+  D+ N  A R+++EIK RPA NPLI H+   
Sbjct: 13  DERSLREAADLLKKGEVVVFPTETVYGIGADAYNEEACRKIFEIKGRPADNPLIVHICSF 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           S +++ A          + FWPGPLT++L   S   I  + TA L T   R+P      K
Sbjct: 73  SQLEEVADGYESFRDFLERFWPGPLTVILPKKSQR-ISDVVTAGLPTVAVRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE  G P+A PSAN SG+ S T+V+H++   + + + LI+D G +  GLESTI+++  E
Sbjct: 132 LIEMLGDPIAAPSANLSGRPSATSVEHVVEDFMGR-VSLILDAGNTPFGLESTIIDLSRE 190

Query: 187 KKVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           K V +LRPG +E+E LK      +  +     +    P +PGM   HYAP   + L    
Sbjct: 191 KPV-LLRPGPVEVEKLKEFFPDLVVPDFVKKSEFRGKPLAPGMKYRHYAPSKPLILVENL 249

Query: 243 VNPREALIRF-GNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGASSIA 298
              ++ L  F  +V I   E   +  +    G LK     A NLF  ++ A+      I 
Sbjct: 250 EKMKDVLREFPDHVVICVEERKELYRDRIVIGSLKNPYSIAQNLFAALREAEKREKEYII 309

Query: 299 FSSIPNHGLGIAINNRLERAAA 320
              +   G+  A+ NRL +AA+
Sbjct: 310 VEGLEERGILFAVMNRLRKAAS 331


>gi|167636681|ref|ZP_02394969.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442]
 gi|254744456|ref|ZP_05202136.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Kruger
           B]
 gi|167527881|gb|EDR90703.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442]
          Length = 346

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +   +I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|210614126|ref|ZP_03290062.1| hypothetical protein CLONEX_02275 [Clostridium nexile DSM 1787]
 gi|210150827|gb|EEA81835.1| hypothetical protein CLONEX_02275 [Clostridium nexile DSM 1787]
          Length = 521

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 174/338 (51%), Gaps = 33/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  + +A E L+ G  +A PTETVYGL  ++ N  A R+ YE K RP+ NPLI H++DI
Sbjct: 28  DTEIIAEAGEILEKGGLVAFPTETVYGLGANALNEEAARKTYEAKGRPSDNPLIVHIADI 87

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             + +     P     + + FWPGPLTL+ +    + + PL +T  L+T   R+P     
Sbjct: 88  QALDEIVEFIPEKAKSIVEKFWPGPLTLIFE---KSGVVPLGTTGGLQTVAVRMPEDEIA 144

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G  ++ PSAN SG+ S T+ +H+ +  +  +I +IIDGG  +IG+ESTIV++ 
Sbjct: 145 RALIRAGGGYVSAPSANTSGRPSPTSAEHV-AEDLDGKIDMIIDGGNVEIGVESTIVDMT 203

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETS-------TPQSPGMLKSHYAPRSQV- 236
            E  + ILRPG +  E L+  I    E  VD T+        P++PGM   HYAP++Q+ 
Sbjct: 204 VEPPM-ILRPGAITKEMLEEVIG---EVAVDRTTLSETSDAAPKAPGMKYRHYAPKAQLV 259

Query: 237 --------RLRAIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGKLKEAAFNL 282
                    ++AI     E + R   V I       N+    I  ++         A NL
Sbjct: 260 IVNGAPLEAVKAIRQLAYEQMRRGNQVGIIATSETANLYTNGIVKSIGTRANENSIAKNL 319

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++  DD   + I   +    G+G AI NRL +AA 
Sbjct: 320 YKVLREFDDEEVAYIFSEAFAVEGIGNAIMNRLIKAAG 357


>gi|14602037|ref|NP_148583.1| putative translation factor [Aeropyrum pernix K1]
 gi|5106101|dbj|BAA81412.1| putative translation factor [Aeropyrum pernix K1]
          Length = 367

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 174/353 (49%), Gaps = 48/353 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +A PTETVYGL  D+ NP A  R++E+K RP  NPLI HVS +
Sbjct: 22  DRRAIERAAEVLRRGGLVAFPTETVYGLGADALNPRAAARIFEVKGRPPDNPLIVHVSSL 81

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            M +  A +   +L L +  WPGPLTLVL       +  + TA L+T   R+P      +
Sbjct: 82  EMARTVAEIPGKALRLVEKLWPGPLTLVLP--RKPVVPDIVTAGLETVAVRMPAHKVALE 139

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G P+A PSAN SG+ S T+ +H++    C  + +I+D G +  G+ESTI+++   
Sbjct: 140 LVKAAGRPVAAPSANPSGRPSPTSGEHVIRDLDCM-VDVILDAGETYFGVESTIIDLTRT 198

Query: 187 KKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAP--------- 232
             V +LRPG + +E L+R +  ++        +     P +PGM   HYAP         
Sbjct: 199 PPV-LLRPGPIPVEVLERLLEEKILVPPEARGLRAADRPLAPGMKYRHYAPDTPLILVDT 257

Query: 233 ---------RSQVR-------LRAIHVNPRE------ALIRFGNVPIKNIENAIISLNLS 270
                     + VR       LR   V P E       L+R     ++ +E A I   L 
Sbjct: 258 SPGAVERIVEAAVREVARARGLRVALVGPDELVDVVALLLR-----LRGVEPAAI-FRLG 311

Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFS-SIPNHGLGIAINNRLERAAAPR 322
                  AA  LF  ++  D+ G   +A     P  G+G+A+ NRL +AA+ R
Sbjct: 312 PLADTTVAARRLFKTLRRIDELGNIDVAIVLPFPERGIGLAVMNRLRKAASRR 364


>gi|260584607|ref|ZP_05852353.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella elegans ATCC
           700633]
 gi|260157630|gb|EEW92700.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella elegans ATCC
           700633]
          Length = 341

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 176/334 (52%), Gaps = 22/334 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     L +A   L  G  +A PTETVYGL   + +  A+ +++E K RP+ NPLI HV 
Sbjct: 5   IFHQETLDQAATLLKQGEVVAFPTETVYGLGAIATSQEAVLKVFEAKGRPSDNPLIVHVH 64

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFRVP-CG 122
            +  V       P S   LAK FWPGPLT++L   +   I+ P  +A L T  FR+P   
Sbjct: 65  SVDHVMDTVEEFPESAKLLAKHFWPGPLTMILK--AKPGIYAPALSAGLPTVSFRMPNHE 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T  LIE  G PL  PSAN+S + S T V+H++   +   I  I+DGG + +G+EST+++
Sbjct: 123 LTLSLIEQVGIPLVGPSANQSTKPSPTRVEHVV-EDMDGRIAGIVDGGDTSVGVESTVID 181

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +  E+   ILRPG +  E ++  I   +EY      E  TP+SPGM   HYAP + V + 
Sbjct: 182 LTNEEGPVILRPGVITKEEIEPIIGPLVEYMKTTTGEKVTPKSPGMKYRHYAPTTPVVVV 241

Query: 240 AIHVNPREALI-----RFGNVPIKNIENAI--ISLNLSKTGKLKEA------AFNLFNYM 286
              V    +LI     +   V +   +N +  + LN+S++  L E       + +LFN +
Sbjct: 242 EGSVEFWHSLIEEYQEQGEKVAVMATDNILDEVRLNVSESYSLGEKDSVADMSHHLFNAL 301

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  D + A+ I   +    G G+A  NRLE+A++
Sbjct: 302 RSLDHTDATIILAQASVKEGSGLAYMNRLEKASS 335


>gi|328555401|gb|AEB25893.1| ribosome maturation factor; RNA binding protein [Bacillus
           amyloliquefaciens TA208]
 gi|328913773|gb|AEB65369.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           amyloliquefaciens LL3]
          Length = 346

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 19/332 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S TD   + +A E L     +A PTETVYGL  ++ N  A+ ++YE K RP+ NPLI H
Sbjct: 14  LSTTDPQ-ITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +SDI  + +  S V   +  L KLFWPG LTLVL       + P  TA L+T   R+P  
Sbjct: 73  ISDIGQLDRFISHVPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI + G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST++
Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL- 238
           +   ++ V +LRPGG+  E ++ A    L  +   +E   P SPGM  +HYAP + + + 
Sbjct: 191 SCAGKQPV-LLRPGGVTKEQIESAAGPVLVDKGLTEEDEVPISPGMKYTHYAPSAPLAVA 249

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNL------SKTGKLKEAAFNLFNYMKI 288
               R I     E   R   + I   E    S          +   L+  A  L++ ++ 
Sbjct: 250 DGGARRIQELADEYKRRGKRIGILTTEENADSYQADFIKVCGRRADLETVASALYDALRS 309

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D++    I   S P+ G+G+A+ NRL +AA 
Sbjct: 310 FDEAEVDMIISESFPDTGVGLAVMNRLMKAAG 341


>gi|229087815|ref|ZP_04219931.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44]
 gi|228695490|gb|EEL48359.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44]
          Length = 347

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 170/329 (51%), Gaps = 21/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A   L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 17  DYPQLQEAARLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGAR 76

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S + +    + P++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 77  SQLGEIVREITPVAEELMKHFWPGPLTIILP--KKDGISEKVTAGLDTVGVRMPDHPVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+V+  C
Sbjct: 135 ALIEAANVPVAAPSANRSGRPSPTLAHHVY-EDLNEKIAGIVDGGATGVGVESTVVD--C 191

Query: 186 EKKV-RILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPR--------S 234
             +V  ILRPGG+  E L+  I  V L+  + DE   P++PGM  +HYAP+        S
Sbjct: 192 TSEVPTILRPGGITKEQLEEVIGIVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 251

Query: 235 QVRLRAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           +  ++ +    +E     G       +++  A + L+      L   A  L++ ++  D 
Sbjct: 252 RDFIQQLVDKKKEEGYTVGVLTTEEYQHVYKADVVLSCGVRSDLASVATKLYDVLRTFDA 311

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S    I   S PN G+G AI NRL +AA 
Sbjct: 312 SEVDVIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|228936610|ref|ZP_04099404.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823045|gb|EEM68883.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 346

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +   +I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASIATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|229176001|ref|ZP_04303497.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3]
 gi|228607494|gb|EEK64820.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3]
          Length = 347

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C  +V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSEV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|220932631|ref|YP_002509539.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168]
 gi|219993941|gb|ACL70544.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168]
          Length = 364

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 173/349 (49%), Gaps = 43/349 (12%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            I+ + +++A+R+    L  G  +A PTETVYGL  D+ + +A++++++ K RP  NPLI
Sbjct: 21  DILKLKENDAIREGASLLQKGEVVAFPTETVYGLGADATSESAVKKIFKAKGRPRDNPLI 80

Query: 62  CHVSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            H+ ++  +      +PLS     L K FWPGPLTL+ +   T  I  ++TA L++   R
Sbjct: 81  VHIGEMDQLYDIIK-NPLSDTTRRLIKHFWPGPLTLIFEKKET--IPGVTTAGLESVAVR 137

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
            P     + LI     P+A PSAN SG  S T  +H+    +   IP IIDGG S +G+E
Sbjct: 138 FPDNPVARALIGLSSVPVAAPSANLSGSPSPTRAEHVF-KDLKGRIPFIIDGGPSSVGVE 196

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-STPQSPGMLKSHYAPRSQV 236
           ST+++++    V ILRPGG+  E +        E   +E    P SPGM   HY+PR+ +
Sbjct: 197 STVIDIRSGNPV-ILRPGGVTREEIAEVTGFSPENPDNEDRKKPLSPGMKYRHYSPRTPL 255

Query: 237 RLRAIH--------------------------VNPREALIRFGNVPIKNIENAIISLNLS 270
            L  I                           +  +E+L  F    IK +   I S N  
Sbjct: 256 YLIEIRDFDKIRDVGEKYKGYNLALVITSETDMVLKESLKSFSTTGIKKV--VIGSRN-- 311

Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                K+ A  +F+ ++  D      I F +IP  GLG AI NRL +AA
Sbjct: 312 ---DFKKIAACMFDILRNLDTDNIDLIFFETIPEKGLGEAIMNRLAKAA 357


>gi|308175423|ref|YP_003922128.1| ribosome maturation factor [Bacillus amyloliquefaciens DSM 7]
 gi|307608287|emb|CBI44658.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 346

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 19/332 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S TD   + +A E L     +A PTETVYGL  ++ N  A+ ++YE K RP+ NPLI H
Sbjct: 14  LSTTDPQ-ITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +SDI  + +  S  P  +  L KLFWPG LTLVL       + P  TA L+T   R+P  
Sbjct: 73  ISDIGQLDRFISHIPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI + G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST++
Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL- 238
           +   ++ V +LRPGG+  E ++ A    L  +   +E   P SPGM  +HYAP + + + 
Sbjct: 191 SCAGKQPV-LLRPGGVTKEQIESAAGPVLVDKGLTEEDEVPISPGMKYTHYAPSAPLAVA 249

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNL------SKTGKLKEAAFNLFNYMKI 288
               R I     E   R   + I   E    S          +   L+  A  L++ ++ 
Sbjct: 250 DGGARRIQELADEYKSRGKRIGILTTEENAESYQADFIKVCGRRADLETVASALYDALRS 309

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D++    I   S P+ G+G+A+ NRL +AA 
Sbjct: 310 FDEAEVDMIISESFPDTGVGLAVMNRLMKAAG 341


>gi|304317927|ref|YP_003853072.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779429|gb|ADL69988.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 349

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 180/336 (53%), Gaps = 28/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   L +G  +A PTETVYG+  +S NP A+ +++  K RP  NPLI H+++ 
Sbjct: 13  DIGLIDEAANILISGGLVAFPTETVYGIGANSLNPDAVAKIFIAKGRPQDNPLILHIAEF 72

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + K+A +V   +L + +LFWPGPLT++ +   +  + P++TA + T   R+P      
Sbjct: 73  QDLFKYAKNVPDNALKMMELFWPGPLTMIFE--KSDIVPPINTAGMDTVAIRMPSNTIAH 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G P++ PSAN SG+ S T+  H++ + +   + +IIDGG   +G+EST+V++  
Sbjct: 131 TLIKRAGIPVSAPSANLSGKPSPTDASHVI-NDLYGSVDMIIDGGSCDVGVESTVVDMTG 189

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST----PQSPGMLKSHYAPRSQVRLRA 240
           E  + ILRPGG+  E +  AI SVE++  V +       P++PGM   HY+P ++V +  
Sbjct: 190 EIPI-ILRPGGITKEMIMNAIGSVEVDPIVYKKPAKDLRPKAPGMKYKHYSPDAEVFIVK 248

Query: 241 IHV----------------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
            ++                N ++  I       +   N ++ L +    + +  A NLFN
Sbjct: 249 GNLGDVIKKIQELTEFQLNNGKKVGIMATEQTCEKYRNGVV-LVVGDRERPETIAKNLFN 307

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D  G   +        G+G+AI NRLE+AA 
Sbjct: 308 CLREFDKKGVDIVYAEGFDYSGIGLAIMNRLEKAAG 343


>gi|118480360|ref|YP_897511.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam]
 gi|196042389|ref|ZP_03109654.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99]
 gi|118419585|gb|ABK88004.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam]
 gi|196026781|gb|EDX65423.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99]
          Length = 346

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVKGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +   +I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASIATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|229158887|ref|ZP_04286944.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342]
 gi|228624498|gb|EEK81268.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342]
          Length = 347

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|304407777|ref|ZP_07389428.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304343260|gb|EFM09103.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 385

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 169/357 (47%), Gaps = 63/357 (17%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKH 73
            L  G  +A PTETVYGL  D+R  +A+  ++  K RP+ NPLI H++D     ++VK +
Sbjct: 31  LLRTGGTVAFPTETVYGLGADARQTSAVENVFVAKGRPSDNPLIVHIADEAQLRTLVKPY 90

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
              +     L + FWPGPLTLVL  L    + P  TA L T   R+P      +LI   G
Sbjct: 91  GDTE---RALMRRFWPGPLTLVLPALEGA-VSPRVTAGLDTVAVRMPDHAVALRLIAESG 146

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSANRSG+ S T  +H+    +   I  I+DGG + +GLEST+V V+    VRIL
Sbjct: 147 CPVAAPSANRSGRPSPTVAEHV-REDLNGRIDGIVDGGPTGVGLESTVVQVEAPGVVRIL 205

Query: 193 RPGGLEIETLKRAI-------SVELEYCVDETSTPQ-----------------------S 222
           RPGG+    L+ A        S+E     D T  PQ                       S
Sbjct: 206 RPGGITPVQLREAAPTVLLDESLEALERKDATMVPQERAVVSDSPAVGTATAVPAAAPRS 265

Query: 223 PGMLKSHYAPRSQVRLRAIHVNPRE-------------------ALIRFGNVPIKNIENA 263
           PGM  +HYAPR  ++L  +H  P +                    ++ +         +A
Sbjct: 266 PGMKYTHYAPRGSMQL--VHGEPDDVRAYITKALQAAAAEGEITGVLTYDEHAASYHADA 323

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +IS       KL+ AA  L+  ++  D  G   I   +  + G+G+A+ NRLE+AA 
Sbjct: 324 VISCG--SLMKLETAAQGLYAALREFDARGVQRIWAEACSSDGIGLALMNRLEKAAG 378


>gi|153853663|ref|ZP_01995043.1| hypothetical protein DORLON_01034 [Dorea longicatena DSM 13814]
 gi|149753818|gb|EDM63749.1| hypothetical protein DORLON_01034 [Dorea longicatena DSM 13814]
          Length = 353

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 175/341 (51%), Gaps = 39/341 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +++ +R+A   L  G  +A PTETVYGL  D+ N  A +++Y  K RP+ NPLI H++++
Sbjct: 17  NTDIIREAGRILKEGGLVAFPTETVYGLGADALNEDAAKKIYAAKGRPSDNPLIIHITNM 76

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             + K  S  P  ++ +A+ +WPGPLT++    + +DI P  +T  L T   R+P     
Sbjct: 77  KALDKIVSEVPEKAVKVAEKYWPGPLTMI---FNKSDIVPYGTTGGLDTVAVRMPVDEIA 133

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++I+  G  +A PSAN SG+ S T  +H+ +  +   + +I+DGG  +IG+ESTI++V 
Sbjct: 134 REVIDAGGGYIAAPSANTSGRPSPTTAQHV-AEDLTGRVDMIVDGGAVEIGVESTILDVT 192

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR 237
            E  + ILRPG +  E  +  I    E  VD T         P++PGM   HYAP++ + 
Sbjct: 193 VEPPM-ILRPGAITKEMFEEVIG---EVTVDRTLIRPDSKQVPKAPGMKYRHYAPKADL- 247

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL---------SKTGKLK---------EAA 279
              I   P E +++  N   K    A   + +          K+G +K           A
Sbjct: 248 --TIIEGPLEKVVKEINKRAKEKSEAGYKVGVIGTEETVADYKSGDVKCIGTRADESTIA 305

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  ++  DD     I   S    G+G AI NRL +AA 
Sbjct: 306 ANLFRILREFDDDQVDYIYSESFDTAGIGSAIMNRLLKAAG 346


>gi|228988550|ref|ZP_04148637.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771167|gb|EEM19646.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 347

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|226315059|ref|YP_002774955.1| hypothetical protein BBR47_54740 [Brevibacillus brevis NBRC 100599]
 gi|226098009|dbj|BAH46451.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 359

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 166/332 (50%), Gaps = 28/332 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A  FL  G  +A PTETVYGL  ++ +  A+ +++  K RP+ NPLI H+     +   A
Sbjct: 28  AARFLREGAVVAFPTETVYGLGANALSNEAVEKIFTAKGRPSDNPLIVHIGAWDQLSTVA 87

Query: 75  SVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           S  P     L + FWPGPLT++L    T  +  L TA L +   R+P       LI+  G
Sbjct: 88  SEVPEKGKKLMEAFWPGPLTVILP--KTDQVASLVTAGLDSVGVRMPDHPIALALIKEAG 145

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSANRSG+ S T   H+L + +   +  ++DGG + +G+EST+++V  +  + IL
Sbjct: 146 VPIAAPSANRSGRPSPTTAAHVL-ADLDGRVAGVVDGGATGVGVESTVIDVTQDPPM-IL 203

Query: 193 RPGGLEIETLKRAIS-VELE--YCVDETSTPQSPGMLKSHYAPRSQVRLRA--------- 240
           RPGG+  E ++  I  VEL+  + V     P+SPGM  +HYAP  ++ L +         
Sbjct: 204 RPGGITREQMEPVIGYVELDPSFQVGAAEAPRSPGMKYTHYAPEGEMWLVSGECEKVRGK 263

Query: 241 ---------IHVNPREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIAD 290
                     H      L      P      ++ + L +     L+  A  L+  ++  D
Sbjct: 264 MEDMLQQAKQHGQKTGVLATEETAPFWQSHASVDVVLVVGSQSDLEGVAQQLYAVLREFD 323

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D     I   + P +GLG+A+ NRLE+AA  R
Sbjct: 324 DQEVQYIVGETFPRNGLGMAVMNRLEKAAGGR 355


>gi|300172698|ref|YP_003771863.1| putative translation factor [Leuconostoc gasicomitatum LMG 18811]
 gi|299887076|emb|CBL91044.1| Putative translation factor (Sua5 family) [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 335

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 171/327 (52%), Gaps = 20/327 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           SN +++A E L AG  +A PTETVYGL  D+ N TA+++++  K RPA NPLI  ++D  
Sbjct: 8   SNDIKRAGELLRAGEVVAFPTETVYGLGADATNETAVKKVFTAKGRPADNPLIMTIADEK 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +   +  L   FWPG LT++L  +    +  + T  L+T  FR+P     + +
Sbjct: 68  QLDEFVLISQAARQLMTAFWPGSLTIILP-IKPKKVAMIVTGGLQTVAFRLPDNDVARVV 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+  PSAN SG+ S T  +H+    +  +I  I+D G ++IG+EST++++    
Sbjct: 127 IRDAGVPIVGPSANTSGKPSPTTAQHVW-HDMNGKIAAIVDDGPTQIGVESTVIDMSANV 185

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV----RL 238
              ILRPG +  + L+  + V +      TS     TP++PGM   HYAP  +V    RL
Sbjct: 186 PT-ILRPGAVTQQQLQDVLGVTVIDATSTTSVASDVTPKAPGMKYRHYAPDKKVVMFDRL 244

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIADDSG- 293
            AI +    +L     V  ++    ++ L+L ++  L E    A   LF  ++  DD   
Sbjct: 245 DAIDL--MHSLQTHDVVMAQDTTIEVMQLSLEQSWSLGETLETATEQLFAGLRFYDDEAQ 302

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++I    +   G+G A NNRL +AA 
Sbjct: 303 VATIYVEKMSPIGIGKAFNNRLAKAAG 329


>gi|295092488|emb|CBK78595.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cf. saccharolyticum
           K10]
          Length = 377

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 174/343 (50%), Gaps = 34/343 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++  D   L +A   L  G  +A PTETVYGL  ++ + TA RR+YE K RP+ NPLI H
Sbjct: 37  LTQEDRAVLAEAAAILREGGLVAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAH 96

Query: 64  VSDI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC 121
           ++D  ++    A +      LA+ FWPGPLT+V      + + P  +T  L+T   R+P 
Sbjct: 97  IADFEALAPLTAEIPEAGRKLAEAFWPGPLTMV---FKKSGVVPHGTTGGLETVAVRMPS 153

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               ++LI   G P+A PSAN SG+ S T  +H+L     K I +I+DGG   IG+ESTI
Sbjct: 154 DPVARELIRLAGVPIAAPSANTSGRPSPTRAEHVLQDMDGK-IEMIVDGGPVGIGVESTI 212

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST--------PQSPGMLKSHYAP 232
           V+V  E+   +LRPG + +E L+   SV  E  VD   T        P++PGM   HYAP
Sbjct: 213 VDV-TEEIPTLLRPGAVTMEMLR---SVLGETAVDPAITGPMRADIKPKAPGMKYRHYAP 268

Query: 233 RSQV------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEA- 278
           ++ +            R+ A+      A  R G +  +  ++   +  L   G +  EA 
Sbjct: 269 KADLTLVEGETDAVVSRINALAAEKLGAGQRVGIICTEETKDRYPAGILKSIGMRANEAT 328

Query: 279 -AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            A NL+  ++  DD     I   S     LG AI NRL +AA 
Sbjct: 329 VAHNLYAVLREFDDLEVDCIFSESFQTDDLGQAIMNRLNKAAG 371


>gi|229033958|ref|ZP_04188912.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271]
 gi|228728384|gb|EEL79406.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271]
          Length = 346

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 174/327 (53%), Gaps = 25/327 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDIS 68
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++ K   + P++  L + FWPGPLT++L       I    TA L T   R+P       L
Sbjct: 81  VIVKE--IPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           IE    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C  
Sbjct: 137 IEEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTS 193

Query: 188 KV-RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQV 236
            V  ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+ 
Sbjct: 194 AVPTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSRE 253

Query: 237 RLRAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
            ++ +    +E   + G       +++ +A + L+      L   A  L++ ++  D S 
Sbjct: 254 FIQRLVDEKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASE 313

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I   S PN G+G AI NRL +AA 
Sbjct: 314 VDVIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|257882294|ref|ZP_05661947.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502]
 gi|293563063|ref|ZP_06677529.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162]
 gi|293567647|ref|ZP_06678990.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071]
 gi|294623633|ref|ZP_06702471.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317]
 gi|314937736|ref|ZP_07845058.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04]
 gi|314942366|ref|ZP_07849213.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C]
 gi|314947684|ref|ZP_07851093.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082]
 gi|314952115|ref|ZP_07855134.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A]
 gi|314992374|ref|ZP_07857806.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B]
 gi|314997439|ref|ZP_07862386.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01]
 gi|257817952|gb|EEV45280.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502]
 gi|291589582|gb|EFF21387.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071]
 gi|291596959|gb|EFF28172.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317]
 gi|291604977|gb|EFF34445.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162]
 gi|313588448|gb|EFR67293.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01]
 gi|313593099|gb|EFR71944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B]
 gi|313595734|gb|EFR74579.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A]
 gi|313598879|gb|EFR77724.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C]
 gi|313642874|gb|EFS07454.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04]
 gi|313645925|gb|EFS10505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082]
          Length = 341

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPLI HV+  
Sbjct: 7   DETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             VK++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T 
Sbjct: 67  EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRIPDNKKTL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++  
Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184

Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
              +  ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +   
Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290
                A+    +   IR G +    I + +     ++ +     ++ AA  LF  ++  D
Sbjct: 245 GDWSTAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303

Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320
           +   G   I     P  GLG A  NRL++AA 
Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|88802068|ref|ZP_01117596.1| hypothetical protein PI23P_05377 [Polaribacter irgensii 23-P]
 gi|88782726|gb|EAR13903.1| hypothetical protein PI23P_05377 [Polaribacter irgensii 23-P]
          Length = 318

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 125/331 (37%), Positives = 168/331 (50%), Gaps = 32/331 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  ++ + KA + L     +AIPTETVYGLA +  +  AI R++  KKRP  NPLI H
Sbjct: 1   MSIISTD-IEKAVQLLTDAQLVAIPTETVYGLAGNIYSEKAIHRIFSTKKRPFFNPLIVH 59

Query: 64  VSDISMVKKHASVDPLSLH-------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           +  I      AS++ +  H       LA  FWPG LTLVL       I  L TA   T  
Sbjct: 60  IPSI------ASLESIVTHIPEKAKLLAAAFWPGSLTLVLK--KNRSIPDLITAGKDTVA 111

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP    T  L++    PLA PSAN  G IS T   H+  +    +I +I+DGG    G
Sbjct: 112 VRVPNHPVTLALLQQLPFPLAAPSANPFGSISPTKAAHV-EAYFKNDIQMILDGGSCANG 170

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +ESTI+  + +  + I R G L +E ++ A+  ++     E   P++PGML  HYAP + 
Sbjct: 171 IESTIIGFENDTPI-IYRLGALALEDIE-AVVGKITIKNKEEEHPEAPGMLARHYAPNTN 228

Query: 236 VRLRAIHVNPREALI------RFGNVPIKNIENA--IISLNLSKTGKLKEAAFNLFNYMK 287
             L    VN   A I      + G +  K   NA  I  + LSKTG ++EAA NL+  M 
Sbjct: 229 TFL----VNDVAAEIQKYTNKKIGVLVFKTSLNAPNISEIILSKTGSMQEAAANLYAAMH 284

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERA 318
             D      I     P  GLG +IN+RL+RA
Sbjct: 285 ALDAQELDLIIAEKFPEVGLGKSINDRLQRA 315


>gi|15616333|ref|NP_244638.1| hypothetical protein BH3771 [Bacillus halodurans C-125]
 gi|10176395|dbj|BAB07490.1| BH3771 [Bacillus halodurans C-125]
          Length = 348

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 178/329 (54%), Gaps = 18/329 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +SN +++A  ++  G  +A+PTETVYGL  ++ +  A+++++  K RP+ NPLI H+S  
Sbjct: 20  NSNEIKEAALWIKKGELVALPTETVYGLGANALSDEAVQKIFIAKGRPSDNPLIVHISRK 79

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + +  S  P S + L   FWPGPLT++       ++  + TA L T   R+P     +
Sbjct: 80  EQLLRLVSHIPDSANLLINAFWPGPLTIIFP--KGEEVSTVVTAGLDTVAVRMPSHPVAQ 137

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T+  H+L + +  +I  ++DGG +  G+EST+++   
Sbjct: 138 ALIEAANVPIAAPSANRSGKPSPTSATHVL-ADLRGKIAGVVDGGPTAEGVESTVIDCTT 196

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRL----R 239
              + + RPGG+  E L+  +  + ++   + +   P+SPGM  +HYAP  ++ L     
Sbjct: 197 TPPI-LYRPGGVTREQLEAVLGPIRIDPALLGKDEQPKSPGMKYTHYAPEGELTLVENQA 255

Query: 240 AIHV---NPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           AI       RE   + G +     K   +A + L++     L E A NL++ ++  D+  
Sbjct: 256 AIQTFVDKWREKQFKVGIMATDEHKQDYDADVILSVGSRNDLAEVAHNLYHVLRQFDEQK 315

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
              I   + P  G+G+AI NRLE+AA  R
Sbjct: 316 VDVIIGETFPREGIGVAIMNRLEKAAGGR 344


>gi|315652210|ref|ZP_07905205.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saburreum DSM 3986]
 gi|315485516|gb|EFU75903.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saburreum DSM 3986]
          Length = 366

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 175/338 (51%), Gaps = 36/338 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A + + +G  +A PTETVYGL  D+    A +++Y  K RP+ NPLI H+S+I  V 
Sbjct: 30  IRLAADIIKSGGLVAFPTETVYGLGADAFMEEAAKKIYVAKGRPSDNPLIVHISEIREVD 89

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVP-CGFTKKLI 128
             A   P +   LAK +WPGP+T+VL      +I P +T+  L T   R+P     + +I
Sbjct: 90  DIAECIPDIFYSLAKKYWPGPMTVVL---KKRNIVPDATSGGLDTVAVRLPDNNIARAII 146

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+A PSAN SG+ S T  +H+L   +  +I +IIDGG   IG+ESTI+++  +  
Sbjct: 147 KESGVPIAAPSANTSGRPSPTKARHVLED-MNGKIDMIIDGGTVGIGVESTIIDLTSDIP 205

Query: 189 VRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----- 238
             +LRPG + +E L+       I   +E+ +     P++PGM   HYAP++ ++L     
Sbjct: 206 T-LLRPGAVTLEMLENTCKRVDIDPAIEHLLTGNEAPKAPGMKYKHYAPKADMKLVRGNE 264

Query: 239 --------RAIHVNPR--------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
                     I  + R        E    F  V  +     ++SL  SK  +    A+NL
Sbjct: 265 SDVSKYLKGQIQNSDRLTAVLTVDEHKDMFDTVSSEKSNIKVLSLGSSKNPE--SIAYNL 322

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F+ ++  D+ G   I   S    G+G AI NRL++AA 
Sbjct: 323 FDILRKCDELGVEYIFSESFDERGIGKAIMNRLKKAAG 360


>gi|293553330|ref|ZP_06673966.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039]
 gi|291602554|gb|EFF32770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039]
          Length = 341

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPLI HV+  
Sbjct: 7   DETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             VK++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T 
Sbjct: 67  EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++  
Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184

Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
              +  ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +   
Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290
                A+    +   IR G +    I + +     ++ +     ++ AA  LF  ++  D
Sbjct: 245 GDWSTAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303

Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320
           +   G   I     P  GLG A  NRL++AA 
Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|229164273|ref|ZP_04292206.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803]
 gi|228619213|gb|EEK76106.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803]
          Length = 347

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 171/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  IQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGIRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|294617197|ref|ZP_06696849.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679]
 gi|291596542|gb|EFF27783.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679]
          Length = 341

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L AG  +A PTETVYGL  ++  P ++++++ +K RP  NPLI HV+  
Sbjct: 7   DETELQEAAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             VK++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T 
Sbjct: 67  EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++  
Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184

Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
                 ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +   
Sbjct: 185 PAVAPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290
                A+    +   IR G +    I + +     ++ +     ++ AA  LF  ++  D
Sbjct: 245 GDWSTAVQWT-KNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303

Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320
           +   G   I     P  GLG A  NRL++AA 
Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|150401886|ref|YP_001325652.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014589|gb|ABR57040.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus
           Nankai-3]
          Length = 341

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 178/342 (52%), Gaps = 31/342 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + I + N +  A   +  G  +A PTETVYGL  D+ NP A+ +++++K RP  NPLI H
Sbjct: 3   LKILNKNEIEIAANAIKDGDLVAFPTETVYGLGADALNPDAVEKIFKVKGRPIDNPLIIH 62

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG 122
           V+++ M  K A +   +  L + F PGPLT++   L   ++ P ++ ANL T   R+P  
Sbjct: 63  VNNLEMANKIAHITENAKILLQKFSPGPLTII---LKKKEVVPAITCANLDTVAVRIPNN 119

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LIE    P+A PSAN SG+ S TN++HI+   +  +I   I+G  + IG+EST++
Sbjct: 120 KIALELIEKANTPIAAPSANLSGKPSPTNIQHII-DDLGDKINYAIEGETT-IGVESTVL 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE----TSTPQSPGMLKSHYAPRSQV- 236
           ++  EKK +ILR G +  E LK+ I +EL     +      T +SPGM  +HY+P + + 
Sbjct: 178 DL-TEKKPKILRYGSITYEDLKKVIDIELIEINKQGKKIIKTVKSPGMKYTHYSPDAPLI 236

Query: 237 ----RLRAIHVNPREALIRFGNVPIKNIENAII--------------SLNLSKTGKLKEA 278
                +  I     + +  +     KN    II               + L     LK  
Sbjct: 237 MATGNIEEITGKINDLIKEYTEKGEKNENVGIIITEETKDKYPANIKKIVLGSRSDLKTI 296

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           + NLFN ++  D +G S I        GLG+AI +RLE+A++
Sbjct: 297 SKNLFNSLREMDKNGVSIIFIEGFEKKGLGLAIMDRLEKASS 338


>gi|293378552|ref|ZP_06624715.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium PC4.1]
 gi|292642881|gb|EFF61028.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium PC4.1]
          Length = 341

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A + L AG  +A PTETVYGL  ++  P  +++++ +K RP  NPLI HV+  
Sbjct: 7   DETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             VK++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T 
Sbjct: 67  EQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++  
Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSD 184

Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
              +  ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +   
Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRE 244

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290
                A+    +   IR G +    I + +     ++ +     ++ AA  LF  ++  D
Sbjct: 245 GDWSTAVQW-AKNKKIRVGVIASPEISDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303

Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320
           +   G   I     P  GLG A  NRL++AA 
Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|323339963|ref|ZP_08080230.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus ruminis ATCC
           25644]
 gi|323092605|gb|EFZ35210.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus ruminis ATCC
           25644]
          Length = 339

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 181/339 (53%), Gaps = 26/339 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I  I  ++ + KA   L  G  IA PTETVYGL  D+ N  A++R+Y  K RP+ NPL
Sbjct: 1   MLITKIYTTDEIEKAANELRLGELIAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VS   MV+++  S+   ++ L   FWPGPLT++L +     +    T  L+TA FR+
Sbjct: 61  IVTVSSRKMVEEYVESLPERAVKLMDAFWPGPLTMILKIKEGA-LSKAVTGGLETAAFRM 119

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T KLIE+ G P+  PSAN SG+ S T  +H+    +   I  I+D G +++G+ES
Sbjct: 120 PQNKATLKLIESAGVPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTQVGVES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E  V ILRPG + +E L+  +   +   ++ V     P++PGM   HYAP +Q
Sbjct: 179 TIIDLSSEHPV-ILRPGAVTVEQLEEVLKETVLSDKHKVGMKEVPKAPGMKYKHYAPDAQ 237

Query: 236 VRL-------RAI----HVNPREALIRFGNVPIKNIENAII--SLNLSKTGKLKEAAFNL 282
           V +       +A+    +   R  ++ F  V    ++NA +   L+ S    + +A+  L
Sbjct: 238 VLIVKAGDWDKALLWRKNKQERVGVMAFNEV----LKNADLPKKLSYSLGDTVFDASRRL 293

Query: 283 FNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D +     I  + +   GLG A  NRL+++A 
Sbjct: 294 FAGLRYFDSEEKVDFILCAGVKEAGLGEAYMNRLKKSAG 332


>gi|116493076|ref|YP_804811.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745]
 gi|116103226|gb|ABJ68369.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745]
          Length = 340

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 173/331 (52%), Gaps = 24/331 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ ++ A + + AG  ++ PTETVYGL  D+ NP A++++Y  K RP+ NPLI HV+D +
Sbjct: 7   SDEIQVAAQAIKAGELVSFPTETVYGLGADATNPEAVKKVYAAKGRPSDNPLIVHVADQT 66

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            V K A++D  S  L   FWPGPLT++L +     ++ + T  L TA FR P    T  L
Sbjct: 67  EVAKFANIDDKSKKLMDQFWPGPLTIILPIKKGA-LNSIVTGGLDTAAFRNPATQVTIDL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PL  PSAN SG+ S T  +H+L   +  +I  ++D G + IG+EST++++    
Sbjct: 126 IRAAGVPLVGPSANTSGKPSPTKPEHVL-HDLDGKIAGVLDDGETTIGVESTVLDMSSTT 184

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
              ILRPG +  + L   I  V+ ++  V +   P++PGM   HYAP +QV +  +    
Sbjct: 185 P-SILRPGAITEQALAPLIGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYI--VSDQD 241

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKE---------------AAFNLFNYMKIAD 290
            + ++ +           + +  + +T KL E               A+  LF+ ++  D
Sbjct: 242 WDGVVAWLQKHTDQTIGIMATNEIFETKKLGEFDQVRYISLGVDSKTASRELFDGLRTFD 301

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            DS   +I        G+G A  NRL+++A 
Sbjct: 302 ADSAIKTIFAQGFDRIGIGEAYMNRLQKSAG 332


>gi|78044541|ref|YP_361354.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996656|gb|ABB15555.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 342

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 172/343 (50%), Gaps = 39/343 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-- 65
           +   + +A E++  G  +A PTETVYGL  D+ NP A+ +++  K RP  NPLI H++  
Sbjct: 14  EQTIINEAAEYIKKGELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQDNPLIVHIARH 73

Query: 66  -DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            DI  V   A VD  +  L + FWPGPLT+VL      D+  + +A L T   R+P    
Sbjct: 74  EDIYRVA--ARVDVRAQKLMEKFWPGPLTIVLP--RREDLPAVVSAGLPTVAVRLPDHPV 129

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              LIE    P+A PSANRSG+ S T+ +H+L   +   IP+++ GG  ++G+EST++++
Sbjct: 130 AVMLIEAAQTPIAAPSANRSGRPSPTSYEHVL-DDLSGIIPVVLAGGNCRVGVESTVLDL 188

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
                V +LRPGG+  E L+  I     +   +   P++PGM   HYAPR+ V L     
Sbjct: 189 TVTPPV-VLRPGGITPEMLEEVIGEVRYFNAKDLDAPKAPGMKYPHYAPRAPVYLVK--- 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------------NL 282
            P E L R      + +  A  ++ L  + + KE  F                     NL
Sbjct: 245 TPEEILKR-----ARELGAAGKNVGLLISKETKEQFFPNYSQNLLVLGSRNNPSELLHNL 299

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           +  ++  D      I     P  GL +A+ NRL++AAA R  S
Sbjct: 300 YEKLREFDRRDVELILAEVYPEEGLYLALMNRLKKAAAGRYLS 342


>gi|71394063|gb|AAZ32102.1| putative translation factor [uncultured euryarchaeote Alv-FOS5]
          Length = 342

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 168/315 (53%), Gaps = 28/315 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           +A PTETVYGL  D+ N  A++R++E K RP  NPLI H++    +   A   P  +  L
Sbjct: 32  VAFPTETVYGLGADALNAEAVKRIFEAKGRPQDNPLIVHIAHEEGIYNLAREVPRKAKDL 91

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLTL+L    +  I   +TA L T   R+P     +KLI     P+A PSAN 
Sbjct: 92  IDRFWPGPLTLILK--KSPIIPDRTTAGLDTVAIRMPSHPIARKLILLSERPIAAPSANT 149

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ S T  KH++     K +  IIDGG + +GLEST++++  +  + +LRPGG+ +  L
Sbjct: 150 SGKPSPTTGKHVIDDLYGK-VEYIIDGGPTNVGLESTVIDLTTDPPM-LLRPGGVTLGQL 207

Query: 203 KRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI-------- 250
           +  +  V++   V     T  P+SPGM   HYAP +++ L      PR+ ++        
Sbjct: 208 EEVLGKVDVHPAVFGKRITGNPRSPGMKYRHYAPDARLILVE---GPRDKVVKRINEMLG 264

Query: 251 -----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
                + G + +    N  I +NL K+   +E A  +F+ ++  D  GA  I    IP+ 
Sbjct: 265 SLGTNKIGVLAVYGEYNQGIVVNLGKS--TEEVARKVFDALRDLDRRGADIIIAEGIPDT 322

Query: 306 GLGIAINNRLERAAA 320
            LG+A+ NRL +AA+
Sbjct: 323 ELGLAVMNRLRKAAS 337


>gi|312880381|ref|ZP_07740181.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260]
 gi|310783672|gb|EFQ24070.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260]
          Length = 338

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 170/338 (50%), Gaps = 17/338 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           + +   + S  L +A   L  G  +A PTETVYGL  D+ NP A+  ++  K RP  NPL
Sbjct: 6   LAVTPSSRSRHLEEAVRVLLGGGLVAFPTETVYGLGADATNPRAVGGIFAAKGRPGDNPL 65

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+ +   +   + D  +  LA  FWPGPLTLV++  +   I     A L T   R+P
Sbjct: 66  IVHVASLEEAQALGAFDDRARALAARFWPGPLTLVVE--ADPRIPEEVRAGLPTVAIRMP 123

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + LI   G P+A PSANRSG+ S T+   +    +   IPLI+DGG +++G+EST
Sbjct: 124 RHPLAQDLIRLAGVPVAAPSANRSGRPSPTDAASV-REDLDGRIPLILDGGPAEVGVEST 182

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +V+V  EK V +LRPGG+  E L+R +   L Y   E    +SPG    HYAP   + L 
Sbjct: 183 VVDVTGEKVV-LLRPGGISSEDLER-VCGPLGYPQGEDLLRRSPGTRHRHYAPGVPLWLW 240

Query: 240 AIHVNPRE-ALIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADDSGAS 295
                P E  ++    VP   +       N +   + G  +E A  LF  ++  +  GA 
Sbjct: 241 DGGDVPEEIRILEREGVPWGYVGVLPPPANPAWELRGGTFEEYAALLFRALRRLEQQGAR 300

Query: 296 SIAFSSIPNHGLGI--AINNRLERAAAPR----NQSQR 327
            I  +  P    GI  A+ +RL RA+  R    N+ +R
Sbjct: 301 GI-LAEWPRGKAGIARALRDRLSRASGGREPLVNEPER 337


>gi|261208265|ref|ZP_05922938.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6]
 gi|289565645|ref|ZP_06446091.1| translation factor SUA5 [Enterococcus faecium D344SRF]
 gi|294615327|ref|ZP_06695202.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636]
 gi|260077522|gb|EEW65240.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6]
 gi|289162613|gb|EFD10467.1| translation factor SUA5 [Enterococcus faecium D344SRF]
 gi|291591830|gb|EFF23464.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636]
          Length = 341

 Score =  159 bits (401), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 22/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L AG  +A PTETVYGL  ++  P ++++++ +K RP  NPLI HV+  
Sbjct: 7   DETELQEAAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             VK++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T 
Sbjct: 67  EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++  
Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184

Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
                 ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +   
Sbjct: 185 PAVAPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290
                A+    +   IR G +    I + +     ++ +     ++ AA  LF  ++  D
Sbjct: 245 GDWSTAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303

Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320
           +   G   I     P  GLG A  NRL++AA 
Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|332687007|ref|YP_004456781.1| YrdC/Sua5 family protein [Melissococcus plutonius ATCC 35311]
 gi|332371016|dbj|BAK21972.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Melissococcus plutonius ATCC
           35311]
          Length = 344

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 175/326 (53%), Gaps = 24/326 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A +F+  G  IA PTETVYGL  ++ +  A++ +YE K RP+ NPLI HV  +  +KK+ 
Sbjct: 15  AAKFVKQGELIAFPTETVYGLGANALDEIAVKEVYEAKGRPSDNPLIIHVETVEQIKKYV 74

Query: 75  SVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           S  P ++  LAK FWPGPLT++ ++   T    + T  L TA FR+P    T +LI   G
Sbjct: 75  SNFPFIAEKLAKHFWPGPLTMIFNIKPGT-FPEVVTGGLTTAAFRIPNNRLTLELIHQAG 133

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PL  PSAN SG+ S T  +H+    +  +I  ++DGG ++IG+EST++++  E    IL
Sbjct: 134 VPLVGPSANTSGKPSPTIAEHVY-HDLQGKIAGVLDGGATQIGIESTVLDLTTEVPT-IL 191

Query: 193 RPGGLEIETLK---RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAI 241
           RPG +  + LK     ++V+ ++ ++E   P++PGM   HY+P + V +        +AI
Sbjct: 192 RPGLITKQELKVIIGKVAVD-QHLLNEKEQPKAPGMKYKHYSPDTAVWIISMPADWEKAI 250

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE-----AAFNLFNYMKIADDSGASS 296
           H+  +E  ++ G    + I +   S  ++ T    E     AA  LF  ++  D      
Sbjct: 251 HL-AKERRLKIGLFADEKIVDTYRS-QITATFSFGEDTAINAAKYLFAGLRELDQMAVDV 308

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322
           I         + +A  NRL++AA  +
Sbjct: 309 IFAQGFAERSMALAYMNRLKKAAGQK 334


>gi|331092053|ref|ZP_08340884.1| hypothetical protein HMPREF9477_01527 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402254|gb|EGG81825.1| hypothetical protein HMPREF9477_01527 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 534

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 178/359 (49%), Gaps = 60/359 (16%)

Query: 3   IMSITDSNALRK-----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           I++  D N + K     A + +  G  +A PTETVYGL  ++ +  A ++ YE K RP+ 
Sbjct: 32  IITKVDKNQIEKEVIEQAGKIIQEGGLVAFPTETVYGLGANALDEEAAKKTYEAKGRPSD 91

Query: 58  NPLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTA 115
           NPLI H++DIS + K   ++   ++ LA++FWPGPLT++ +    +DI P  +T  L T 
Sbjct: 92  NPLIIHIADISHLNKIVQNISKKAMDLAEVFWPGPLTMIFE---KSDIVPYGTTGGLDTV 148

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     ++LI   G  ++ PSAN SG+ S T  KH+    +   I +I+DGG   I
Sbjct: 149 AVRMPDDIIARELILEGGGYISAPSANTSGRPSPTTAKHV-EEDMSGRIDMILDGGSVDI 207

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEYCVDETS-TPQSPGMLKSHY 230
           G+ESTIV++  E  + ILRPG +    L+  I    V+     +ETS  P++PGM   HY
Sbjct: 208 GVESTIVDMTAEPPM-ILRPGAVTQRMLEEVIGEVQVDKTLLGEETSEAPKAPGMKYRHY 266

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA------------ 278
           AP++Q+++                  +K+  +AI  L   KT K K+             
Sbjct: 267 APKAQLKIV--------------QGTLKDEVHAIKQLAYEKTKKGKKVGIIASTETAPQY 312

Query: 279 -----------------AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                            A NL+  ++  DD     I   S    G+G AI NRLE+AA 
Sbjct: 313 TAGLIKPIGTRENQSSIAKNLYKVLREFDDENVDCIYSESFSVDGIGSAIMNRLEKAAG 371


>gi|225867306|ref|YP_002752684.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102]
 gi|229187551|ref|ZP_04314691.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1]
 gi|225785999|gb|ACO26216.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102]
 gi|228595918|gb|EEK53598.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1]
          Length = 346

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 172/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLHTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVKGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +   +I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S P+ G+G AI NRL +AA 
Sbjct: 316 VIFSESFPSEGIGNAIMNRLTKAAG 340


>gi|261414826|ref|YP_003248509.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371282|gb|ACX74027.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328197|gb|ADL27398.1| Sua5/YciO/YrdC/YwlC family/SUA5 domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 331

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 174/334 (52%), Gaps = 31/334 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
             +M      ++ +A   L  G  +AIPTETVYGLA ++  P A+ +++  K+RP  +PL
Sbjct: 10  FWVMKFPPWTSVSEAARLLKEGEVVAIPTETVYGLAGNAFEPKALAKIFAAKERPTFDPL 69

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118
           I H++DI+ +   A   P S + LA+ +WPGP+T++   L   D  P L T+ L +   R
Sbjct: 70  IVHIADIAQLTDIAKDIPDSAYRLAEAYWPGPMTII---LPKKDCIPDLCTSALPSVAVR 126

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
            P     + +I+  G PLA PSAN    +S T  +H+ ++ +   I  I+DGG   +G+E
Sbjct: 127 FPSHPIAQAIIKESGLPLAAPSANLFKHVSPTTAEHV-AAQLADRIAGIVDGGPCSVGVE 185

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQ-SPGMLKSHYAPRSQ 235
           S+I+++  E  V  +RPG +  E  K  +  V+++    +   P  +PG   +HY  R Q
Sbjct: 186 SSIISLVGEPTV--MRPGAITPEMFKAILGEVKIKESTSKPGQPMLAPGQCDTHY--RPQ 241

Query: 236 VRLRAIHVNPREAL------IRFGN----VPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           V L    V    AL      I FG     VP         ++NLS TG + EA   L+ +
Sbjct: 242 VPLYYGEVPAGYALPEHTVRIAFGTQQGPVP--------ATVNLSATGDMVEATSKLYAF 293

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           M   DD     I    IPN G+G+A+N+RL+RA+
Sbjct: 294 MHDLDDPKFDLILVDPIPNTGVGMALNDRLKRAS 327


>gi|294940148|ref|XP_002782688.1| sua5, putative [Perkinsus marinus ATCC 50983]
 gi|239894568|gb|EER14483.1| sua5, putative [Perkinsus marinus ATCC 50983]
          Length = 356

 Score =  159 bits (401), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 173/337 (51%), Gaps = 29/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + L +A E L  G  +A PTETVYGL  ++ +  A+  +Y+ K RP+ NPLI H +  
Sbjct: 22  EKHKLIRAGELLREGELVAFPTETVYGLGANALSDEAVAGIYQAKGRPSDNPLIVHTTCA 81

Query: 68  SMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +   + +    DP+++ LAK FWPGPLT+VL + S + I    TA L T   RVP     
Sbjct: 82  ADALRLSQTPEDPIAVKLAKTFWPGPLTMVLPVGSNSGIAKRVTAGLDTVGLRVPSHPVA 141

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHIL------SSSICKEIPLIIDGGISKIGLES 178
             +IE  G P+A PSAN SG+ S T   H+       + +  KE+ +I+DGG    G+ES
Sbjct: 142 HAVIEAAGVPIAAPSANTSGKPSPTEAFHVYEDMEHNADAGRKEVSMIVDGGACDHGVES 201

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRS 234
           T+V +     V ILRPG + +E L+  +     V++   +     P++PGM   HYAP++
Sbjct: 202 TVVRIMDSSHVVILRPGAVTLEQLRACLEGMAVVDIPKPLAGAECPRAPGMKYRHYAPQA 261

Query: 235 QVRL---------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
            V L          A    P   +I F ++   N+  A +  +L     L  A   +F+ 
Sbjct: 262 MVDLVYDKDEILREAALSEPHTVVIAFDDL---NLNGARVR-SLGPRSDLSVACHRIFSL 317

Query: 286 MKIADDS-GASSIAFSSIPNH--GLGIAINNRLERAA 319
            +  DDS  A  I   +  +   G+G A+ NR+E+A+
Sbjct: 318 FRECDDSLHAKRIVLDARFDQTTGIGRALFNRIEKAS 354


>gi|309390218|gb|ADO78098.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium praevalens DSM
           2228]
          Length = 377

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 176/336 (52%), Gaps = 29/336 (8%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK- 72
           KA E L     +A+PTETVYGLA ++ +P A+ +++  K RP  NPLI H++D + +K+ 
Sbjct: 42  KAAELLSQNQLVALPTETVYGLAANALSPKAVSKIFAAKGRPQDNPLIVHIADQAQLKEL 101

Query: 73  -HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             A +   +  L   FWPGPLT++     +  +  L++A L+T   R+P       +IE+
Sbjct: 102 TAAKITAKTQALMDHFWPGPLTIIFP--KSKKVPNLTSAGLETIAIRMPAHPLILAVIES 159

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PLA PSAN SG  S T  +H+    +  +IPLI+DGG  ++G+EST+V+++   +V+
Sbjct: 160 SGLPLAAPSANTSGFPSPTQAEHVY-HDLKGKIPLILDGGPCQVGVESTVVDLRSA-QVK 217

Query: 191 ILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           +LRPGG+  + +   +  E+    D +  T  +PGM   HYAP    +L   +   +  +
Sbjct: 218 VLRPGGISRQEIADFLGEEVLLAADLKDDTAVAPGMKYRHYAPNK--KLYTFNFEDKLFI 275

Query: 250 IRFGNVPIKNIENAIISLNLSK-------TGKLK-----------EAAFNLFNYMKIAD- 290
           ++      ++ + AIIS   SK       T  LK           E A  LF  M+  D 
Sbjct: 276 LKKALKKAESKKIAIISARNSKLDNYQLPTKNLKVLKVFSHQKPAELAQKLFALMRSLDA 335

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           D     I    +   G+G A+ NR+++AAA    SQ
Sbjct: 336 DPEVEEIYIEELAAQGIGEAVMNRIQKAAAAEEYSQ 371


>gi|291543207|emb|CBL16316.1| translation factor SUA5 [Ruminococcus sp. 18P13]
          Length = 341

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 167/330 (50%), Gaps = 24/330 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA   +  G  + +PTETVYGLA D+ N  A+ +++  K RP  NPLI H+S +
Sbjct: 9   DEAGLQKAAGLIREGQVVGMPTETVYGLAADATNRDAVAKVFAAKGRPMDNPLIVHISSM 68

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FT 124
             +++  S  P L   LA  FWPGPLT++   +  +++ P+ T+  L T   R+P     
Sbjct: 69  EELEQAVSRVPELVASLADAFWPGPLTMI---MPKSELIPMETSGGLDTVGVRMPSHPVA 125

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G P+A PSANRSG  S T  +H+L + +   IP I+DGG    GLEST+V   
Sbjct: 126 QALIRIAGVPIAAPSANRSGYPSPTTAQHVL-ADMQGRIPAILDGGACSCGLESTVVAFD 184

Query: 185 CEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
            ++ VRILRPG +  E L        I   +   V  +    SPGM   HYAP + V L 
Sbjct: 185 DDRTVRILRPGFVTKEMLLEHVPNVVIDPAIFRQVSASEKVASPGMKYKHYAPNAAVTL- 243

Query: 240 AIHVNPREALIRFGNVPIKNIENAII---------SLNLSKTGKLKEAAFNLFNYMKIAD 290
            +  +P E   +F  +   +   A+I           +++  G   E    LF  ++  D
Sbjct: 244 -VEGSP-ELFRQFLALQQADGVYALIFDGDAEQFPYPHMTYGGTSIEQGRQLFARLRELD 301

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             GA ++        G+G+A+ NRL RAA 
Sbjct: 302 QIGAKTVYVRMPQKDGVGLAVYNRLIRAAG 331


>gi|297585438|ref|YP_003701218.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens
           MLS10]
 gi|297143895|gb|ADI00653.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens
           MLS10]
          Length = 352

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 163/325 (50%), Gaps = 19/325 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +A E +  G  +A PTETVYGL  D+ +  AIRR++E K RPA NPLI HV+ I   
Sbjct: 26  AIAEAAELIRNGEVVAFPTETVYGLGGDATSDEAIRRIFEAKGRPADNPLIVHVASIEDA 85

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            +     P  +  L   FWPGPLT+VL    T  +    TA L T   R+P      +LI
Sbjct: 86  ARWTLTLPKTAKDLMAAFWPGPLTIVLPHNGT--LSGAVTAGLPTVGLRMPDHPVALRLI 143

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G PLA PS NRSG+ S T   H+    +   IP+I+DGG + +GLEST+V V  + +
Sbjct: 144 EASGRPLAAPSGNRSGRPSPTEAAHV-EEDLNGRIPMILDGGPAGVGLESTVVEV-TDGQ 201

Query: 189 VRILRPGGLEIETLKR-AISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRL-------- 238
           V +LRPGG+ +E L+  A  V ++   +     P+SPGM  +HYAP   + L        
Sbjct: 202 VTVLRPGGVTLEALREVAEHVAIDPSLLKSDEAPRSPGMKYTHYAPDVPLYLVEGELAAL 261

Query: 239 -RAIHVNPREALIRFGNV--PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
            +AI     + L+    +      +  A   +++     L      L+  ++        
Sbjct: 262 KQAIRKAKEDGLLTGAIIVNEWAGLTGAHQEVSVGSETDLAAVGRELYRALRQFKTGEVD 321

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            +   + P   LG AI NRLE+A+ 
Sbjct: 322 MLLVCTFPETELGGAIMNRLEKASG 346


>gi|182420265|ref|ZP_02951494.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum 5521]
 gi|237666937|ref|ZP_04526922.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182375860|gb|EDT73452.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum 5521]
 gi|237658136|gb|EEP55691.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 349

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 174/333 (52%), Gaps = 31/333 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  +A PTETVYGL  D+ N  A+++++  K RP  NPLI HV+  ++  
Sbjct: 18  IEEAAKIIKEGGIVAFPTETVYGLGADALNEDAVKKIFVAKGRPQDNPLIIHVASKNIEH 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIE 129
               +  ++  L   FWPGPLT++   L   DI P +++A+L +   R+P     +KLIE
Sbjct: 78  YVDEIPEIAKELMDKFWPGPLTII---LKKNDIIPNITSASLDSIGVRMPDNEIARKLIE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  +A PSAN SG+ S T+++  +   +   +  II G  SKIG+ESTIV+   +  +
Sbjct: 135 LSGTTIAAPSANISGRPSPTDIERCV-EDLDGRVDYIIGGCHSKIGVESTIVDCTVDPPL 193

Query: 190 RILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            +LRPGG+ +E LK   S +E++  +     E   P++PGM   HYAP+++V +  I  N
Sbjct: 194 -VLRPGGITLEMLKEIDSRIEIDKAIMQKPSENLKPKAPGMKYRHYAPKAKVTI--ISGN 250

Query: 245 PREALIRFGNVPIKNIENAI-----------------ISLNLSKTGKLKEAAFNLFNYMK 287
            ++ + +   +   NIE                    I + L     L   A NLF  ++
Sbjct: 251 RKKTVAKIKEMVNYNIEKQKKVCILTVEENEKEYQQGIKITLGSLSDLTTVAKNLFEALR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             DD GA  I   +    G+G+AI NRL +AA 
Sbjct: 311 KCDDLGADLILAEAYEEKGVGVAIMNRLNKAAG 343


>gi|331701220|ref|YP_004398179.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128563|gb|AEB73116.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 340

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 32/332 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A +F+  G  +A PTETVYGL  D+ N TA++++Y  K RP+ NPLI  VSDI+MV+
Sbjct: 11  LDQAADFIRQGELVAFPTETVYGLGADATNETAVKKVYAAKGRPSDNPLIVTVSDIAMVE 70

Query: 72  KHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
           K+    P S     L   FWPG LT++  L     +    T  L TA FR P   T   L
Sbjct: 71  KYTQ--PFSDDAKALMAKFWPGSLTMIFKLKPNA-LSKSVTGGLDTAAFRFPKNQTTLDL 127

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+  PSAN SG+ S T  +H+    +  +I  I+D G + +G+ESTI+++    
Sbjct: 128 ISKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAIVDDGPTTVGVESTILDMSVAT 186

Query: 188 KVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
              ILRPG +  E ++  I    ++  + V    TP++PGM   HYAP +QV +    V+
Sbjct: 187 P-SILRPGAVTKEDIEAVIHRPVIDELHHVGAKQTPKAPGMKYKHYAPNAQVYI----VD 241

Query: 245 PRE------ALIRFGNVPIK--NIENAIISLN-------LSKTGKLKEAAFNLFNYMKIA 289
           P +      A I+    PI     ++ I ++N       +S     + AA +LF  ++  
Sbjct: 242 PDDDWHDVVAWIKQHPQPIGVMAFDDIIKTINWPDNVDVISLGNDARTAAHDLFAELRDF 301

Query: 290 DDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320
           D+  A  I F+  I   G+G A  NRL ++A 
Sbjct: 302 DNHPAYKIIFTQGIDPKGIGEAYMNRLNKSAG 333


>gi|292669718|ref|ZP_06603144.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541]
 gi|292648515|gb|EFF66487.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541]
          Length = 350

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 172/344 (50%), Gaps = 28/344 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T S    +A   + +G  +A PTETVYGL  +  +  A  R+YE K RP+ NPLI
Sbjct: 4   EILHPTSSVDFERAAGLIQSGELVAFPTETVYGLGANGLDAAACTRIYEAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D++M  +  S + PL+ HL   F PGP+T++L       I  + T  L T   R P
Sbjct: 64  LHIADLTMAHEVTSNMPPLAAHLLTAFAPGPITVILP--KAAHIPDIVTGGLSTVGVRCP 121

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LI   G P+A PSAN SG+ S T    ++   +   IPLI+DGG  ++G+EST
Sbjct: 122 DHTAARRLIRAAGVPIAAPSANTSGRPSPTTAA-MVYEDMAGRIPLILDGGSCRLGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR---AISVELEYCVDETS-TPQSPGMLKSHYAPR-- 233
           IV+   E  + +LRPG +  E +     AI V ++  +   +  P++PGM  +HYAPR  
Sbjct: 181 IVDCTEEGALTLLRPGAVTREMIAAELPAIEVRIDAALTAANEAPRAPGMKYTHYAPRVP 240

Query: 234 --------SQVR-------LRAIHVNPREALIRFGN--VPIKNIENAIISLNLSKTGKLK 276
                     +R       LR      R A+I        ++ I  A  + N    G   
Sbjct: 241 LTVYAGMGDDIRAALRAEFLRRTAAGERPAVIASNETLTALRAIIPAEHTYNCGARGNHS 300

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             A  L++ ++  DD+  +S+        GLG+AI NRL +A+ 
Sbjct: 301 AFAACLYDALRCFDDTDITSLLAEGTGADGLGLAIMNRLRKASG 344


>gi|89095606|ref|ZP_01168500.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911]
 gi|89089352|gb|EAR68459.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911]
          Length = 346

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 166/336 (49%), Gaps = 20/336 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + S+ D   +++A   L     +A PTETVYGL  ++RN  A+++++E K RP+ NPLI 
Sbjct: 12  VDSLNDYPQIKQAAALLAQNETVAFPTETVYGLGGNARNDEAVKKIFEAKGRPSDNPLII 71

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H++D   ++      P S   L + FWPGPLT++ +      +   +TA L T   R+P 
Sbjct: 72  HIADREQLEGIVESVPASADKLMEAFWPGPLTIIFN-KKDGQLSETATAGLNTVGIRMPD 130

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 ++   G P+A PSANRSG+ S T   H+    +   I  I+DGG + +G+EST+
Sbjct: 131 HPVALAILRESGVPVAAPSANRSGRPSPTTAGHV-KEDLNGRIAGIVDGGPTGVGVESTV 189

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAP------ 232
           ++   E  V ILRPGG+  E L+R +          DE   P+SPGM   HYAP      
Sbjct: 190 LDCTGEIPV-ILRPGGVTKEQLERVVGEVAADPALADEKEAPRSPGMKYRHYAPDAPLYI 248

Query: 233 ------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                 R Q  +   H    +A +       +   ++  +    K   L+  A +L+  +
Sbjct: 249 VEGTRERIQELVNEQHTEGLKAGV-LTTAENEKFYDSDFTFICGKRANLETVAASLYEAL 307

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  + SG   I   S P  G+G AI NRL +AA  R
Sbjct: 308 RSFNSSGVDVIFSESFPAEGVGEAIMNRLLKAAGHR 343


>gi|229007631|ref|ZP_04165225.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4]
 gi|228753642|gb|EEM03086.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4]
          Length = 340

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 171/329 (51%), Gaps = 21/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 10  DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 69

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +K      P ++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 70  SQLKGIVREIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C
Sbjct: 128 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--C 184

Query: 186 EKKV-RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------S 234
             +V  ILRPGG+  E L+  I +V L+  + DE   P++PGM  +HYAP+        S
Sbjct: 185 TSEVPTILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 244

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           +  ++ +    ++     G +  +  ++   A + L+      L   A  L++ ++  D 
Sbjct: 245 RDFIQQLVDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDA 304

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S    I   S PN G+G AI NRL +AA 
Sbjct: 305 SKVDVIFSESFPNEGIGNAIMNRLTKAAG 333


>gi|218900451|ref|YP_002448862.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842]
 gi|228968453|ref|ZP_04129442.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218543168|gb|ACK95562.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842]
 gi|228791233|gb|EEM38846.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 346

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G       +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QQLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|229000111|ref|ZP_04159681.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17]
 gi|228759648|gb|EEM08624.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17]
          Length = 343

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 171/329 (51%), Gaps = 21/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 13  DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 72

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +K      P ++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 73  SQLKGIVREIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C
Sbjct: 131 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--C 187

Query: 186 EKKV-RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------S 234
             +V  ILRPGG+  E L+  I +V L+  + DE   P++PGM  +HYAP+        S
Sbjct: 188 TSEVPTILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 247

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           +  ++ +    ++     G +  +  ++   A + L+      L   A  L++ ++  D 
Sbjct: 248 RDFIQQLVDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDA 307

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S    I   S PN G+G AI NRL +AA 
Sbjct: 308 SKVDVIFSESFPNEGIGNAIMNRLTKAAG 336


>gi|75762684|ref|ZP_00742523.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903800|ref|ZP_04067916.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL
           4222]
 gi|74489830|gb|EAO53207.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228855827|gb|EEN00371.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL
           4222]
          Length = 346

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G       +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QQLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|229105918|ref|ZP_04236542.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28]
 gi|228677492|gb|EEL31745.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28]
          Length = 342

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 169/324 (52%), Gaps = 19/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L     +A PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 17  LQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 76

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              + + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 77  GIVNEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E   
Sbjct: 135 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIPT 193

Query: 190 RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRLR 239
            ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  ++
Sbjct: 194 -ILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSRKFIQ 252

Query: 240 AIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            +    +E   + G       +++ +A + L+      L   A  L++ ++  D S    
Sbjct: 253 RLVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASEVDV 312

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I   S PN G+G AI NRL +AA 
Sbjct: 313 IFSESFPNDGIGNAIMNRLTKAAG 336


>gi|262277471|ref|ZP_06055264.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HIMB114]
 gi|262224574|gb|EEY75033.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HIMB114]
          Length = 321

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/321 (37%), Positives = 164/321 (51%), Gaps = 16/321 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I S TD N L+K  + L      A+PTETVYGLA ++ +  A+ ++Y +KKRP  NPLI 
Sbjct: 14  IFSPTDKN-LKKCSKILKNHGIAALPTETVYGLAGNAYSNRAVTKIYSLKKRPKKNPLIV 72

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           H   +  + K    +P    L + F PGP+T VL L   + I         T   RVP  
Sbjct: 73  HFDCLQSILKETEQNPYLQKLYRKFSPGPITYVLKLKKKSKISKKLINKNGTIACRVPAN 132

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              +K+I     PLA PSAN S  +S T+ K +      K+I  I+DG  SK+G+EST+V
Sbjct: 133 AHFRKIIRLAHTPLAAPSANISNHVSPTSSKDVF-DEFGKKIKFILDGKRSKVGIESTVV 191

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           N+    KV  LRPG +    +++ I    +    E     SPG LK HY+P   V L   
Sbjct: 192 NLVGRPKV--LRPGKITKYEIQKVIKHVTKNISKEI---LSPGQLKKHYSPGIPVFLNQQ 246

Query: 242 HVNPREALIRFGNVPI--KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
              P  AL+ FG   +  KNI        LSK+  L E A  L+  ++        +I  
Sbjct: 247 KPKPYGALLVFGKTKLKGKNI------FYLSKSKSLDECAKKLYLKLRQIKKLKYKTITV 300

Query: 300 SSIPNHGLGIAINNRLERAAA 320
           + IPN G+GIAINNRL+RA++
Sbjct: 301 TKIPNQGIGIAINNRLKRASS 321


>gi|152977511|ref|YP_001377028.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026263|gb|ABS24033.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 347

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 167/329 (50%), Gaps = 21/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A + L     +A PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 17  DYPQLQEAAKLLRENEAVAFPTETVYGLGANAMNDEAIVKIFEAKGRPSDNPLIVHIGSK 76

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S +      V P++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 77  SQLTDIVREVPPVAEVLMKHFWPGPLTIILP--KKDGISEKVTAGLDTVGVRMPDHEVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C
Sbjct: 135 ALIEAANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--C 191

Query: 186 EKKV-RILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQVRL---- 238
             KV  ILRPGG+  E L+  I  V  +  + DE   P++PGM  +HYAP++ + +    
Sbjct: 192 TSKVPTILRPGGITKEQLEEVIGPVSFDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 251

Query: 239 -----RAIHVNPREALI--RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                + +    RE            +++  A + L+      L   A  L++ ++  D 
Sbjct: 252 RDFIQQLVEKKKREGYTVGVLTTEEYQHVYQADVVLSCGLRRDLASVATKLYDVLRTFDT 311

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S    I   S PN G+G AI NRL +AA 
Sbjct: 312 SKVDCIFSESFPNEGIGNAIMNRLIKAAG 340


>gi|293571482|ref|ZP_06682509.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E980]
 gi|291608487|gb|EFF37782.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E980]
          Length = 341

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 175/331 (52%), Gaps = 20/331 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A + L AG  +A PTETVYGL  ++  P  +++++ +K RP  NPLI HV+  
Sbjct: 7   DETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             VK++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T 
Sbjct: 67  EQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE  G PL  PSAN SG+ S T   H+    +  +I  II+ G ++IG+EST++++  
Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIEDGATRIGVESTVLDLSN 184

Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
              +  ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +   
Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIGSPVAVDQHLVKENETPKAPGMKYKHYSPDTRVLMVRD 244

Query: 239 --RAIHVN-PREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD 291
              +I V   +   IR G +    I + +     ++ +     ++ AA  LF  ++  D+
Sbjct: 245 SDWSIAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDE 304

Query: 292 S--GASSIAFSSIPNHGLGIAINNRLERAAA 320
              G   I     P  GLG A  NRL++AA 
Sbjct: 305 PTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|288574653|ref|ZP_06393010.1| Sua5/YciO/YrdC/YwlC family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570394|gb|EFC91951.1| Sua5/YciO/YrdC/YwlC family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 322

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 167/321 (52%), Gaps = 17/321 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   L +G  +  PTETVYGL  D  +  A+  ++E K RP+ NPLI HV D 
Sbjct: 13  DREVIDRAVSILKSGGLVGFPTETVYGLGADGLDGKAVSGIFEAKGRPSDNPLILHVGDP 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
             V+K A VD  +  + K  WPGPLTLVL  L    + P  TA L T   R+P       
Sbjct: 73  ESVRKIAKVDDRADMIMKNLWPGPLTLVLPALPI--VPPEVTAGLDTVGVRMPSHPVALA 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++    P+A PSAN SG+ S T+   + +  +   + LIIDGG +++GLEST+++V  E
Sbjct: 131 LLQACPFPVAAPSANTSGRPSPTDAVTV-ARDLDDRVDLIIDGGATEVGLESTVLDVTGE 189

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIH 242
             V +LRPGGL +E L   +  E+   V E    +SPG    HYAP   + L     + H
Sbjct: 190 VPV-LLRPGGLSVEVLADLLG-EIALPVGELELKRSPGTRYRHYAPSVPLILWIPEESGH 247

Query: 243 VNPREALIRFGNV-PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
            +  E+    G V P+  ++ +II  ++   G+       LF+ ++  +     +I    
Sbjct: 248 PDFGESCRYIGMVEPVFPVDKSIIFDSVESYGR------GLFSALRELEREWDGTIVAQW 301

Query: 302 IPNHGLGIAINNRLERAAAPR 322
             + G+G+A+ +RL RA+  R
Sbjct: 302 PDSDGIGLALRDRLRRASGGR 322


>gi|326692968|ref|ZP_08229973.1| putative translation factor [Leuconostoc argentinum KCTC 3773]
          Length = 335

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 169/324 (52%), Gaps = 20/324 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   L AG  +A PTETVYGL  D+ N  A+++++  K RPA NPLI  V+D+  + 
Sbjct: 11  VQQAGALLKAGEVVAFPTETVYGLGADATNDAAVKKVFLAKNRPADNPLIMTVADVEQLT 70

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
              ++   +  L   FWPG LT+++  +    +  L T  L+T  FR+P   T + +I  
Sbjct: 71  PFVTISEAARQLMTAFWPGSLTIIMP-IKPDQVSMLVTGGLQTVAFRLPANETARAVIRA 129

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+  PSAN SG+ S T  +H+    +   I  I+D G +++G+EST++++  +    
Sbjct: 130 AGVPIVGPSANTSGKPSPTTAQHVW-HDMQGRIAAIVDDGPTEVGVESTVIDMSTDTPT- 187

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV----RLRAI 241
           ILRPG +  + L+  +   +      TS     TP++PGM   HYAP   V    RL A+
Sbjct: 188 ILRPGAVTQQQLEAVLQQPVFDATSTTSVASHVTPKAPGMKYRHYAPDKTVVMFDRLDAL 247

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIADDS-GASS 296
            +  R  L     V  ++   A + L +++T  L E    A   LF  ++  D++   ++
Sbjct: 248 AL--RSNLTAQDVVMAQDDTLATLQLPMTQTWSLGETLESATEQLFAGLRFYDETPEVAT 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I    +P  G+G A NNRL +AA 
Sbjct: 306 IYVEKMPPIGIGKAYNNRLAKAAG 329


>gi|325264267|ref|ZP_08130998.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. D5]
 gi|324030338|gb|EGB91622.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. D5]
          Length = 511

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 171/339 (50%), Gaps = 35/339 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A E L  G  +A PTETVYGL  ++ +  A ++ Y  K RP+ NPLI H++D+
Sbjct: 17  DKEVILEAGEVLKNGGLVAFPTETVYGLGANALDEEAAKKTYAAKGRPSDNPLIVHIADL 76

Query: 68  SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-T 124
             + +   +V P +  LA  FWPGPLT++ +    +DI PL +T  L T   R+P     
Sbjct: 77  QALDEITENVPPETEELAFHFWPGPLTMIFE---KSDIVPLGTTGGLGTVAVRMPSDLIA 133

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++LI   G  ++ PSAN SG+ S T  +H+ +  +  +I +I+DGG   IGLESTI+++ 
Sbjct: 134 RELILAAGGYVSAPSANTSGRPSPTTAQHV-AEDLDGKIDMILDGGSVDIGLESTILDMT 192

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDE-------TSTPQSPGMLKSHYAPRSQVR 237
               + ILRPG +  + L+  I       VDE       T  P++PGM   HYAP++++ 
Sbjct: 193 VTPPM-ILRPGAITADMLEEVIGT---VSVDETILGSESTQAPKAPGMKYRHYAPKARLM 248

Query: 238 L----------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           +                   H   R+A I   N  +      +I  N+      K  A N
Sbjct: 249 IVEGTLREEVFAIRQLAYEAHRQGRKAGIIATNETMPFYTYGLIK-NIGSRDNEKTIARN 307

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L+  ++  D+   + I   S    G+G AI NRLE+AA 
Sbjct: 308 LYAVLREFDEEDVAEIFSESFAAQGIGKAIMNRLEKAAG 346


>gi|187734781|ref|YP_001876893.1| Sua5/YciO/YrdC/YwlC family protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424833|gb|ACD04112.1| Sua5/YciO/YrdC/YwlC family protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 348

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 166/332 (50%), Gaps = 47/332 (14%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82
           + IPTETVYGL  D+ NP A+ R++E K RP+ +PLI HV   S V+K+ +V P  L   
Sbjct: 31  VGIPTETVYGLGADALNPEAVARIFEAKGRPSFDPLIIHVHHGSEVEKYTAV-PEGLKDL 89

Query: 83  ---LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
              LA  FWPGPLTLV   L   DI P + T+ L T   RV      + + +  G P+A 
Sbjct: 90  VHTLASRFWPGPLTLV---LPKADIIPDIVTSGLPTVAVRVSAHPAMRGVAKALGRPIAA 146

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK----VRILR 193
           PSANR G IS T+   +    +   I +I+D G    GLESTIV    ++K    + +LR
Sbjct: 147 PSANRFGHISPTSASAV-QKELGGSIEMILDAGACSEGLESTIVRPVLDEKGKPSLELLR 205

Query: 194 PGGLEIETLKRAISV--ELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            G +  E  +  + V      C  V E S   +PG L SHYAPR  + L    + P E  
Sbjct: 206 EGPVTREQFRNLVKVVRRKPSCRPVSEESPADAPGQLTSHYAPRKPMLL----LEPGENF 261

Query: 250 IRFGNVPIKNIENAIISLNLSK-----------------TGKLKEAAFNLFNYMKIADDS 292
                 P++ ++  ++S   +                  +G+L EAA  LF  M+  D++
Sbjct: 262 -----APVEGVKYGLLSYEGTSALAREGDWAEVVAMSPGSGRLAEAAVRLFALMRQMDEN 316

Query: 293 GA-SSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            A   I   S+P  GLG AI +RL RA+A R 
Sbjct: 317 EAIDVIVAESVPESGLGRAIMDRLRRASAVRE 348


>gi|319788962|ref|YP_004090277.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 7]
 gi|315450829|gb|ADU24391.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 7]
          Length = 338

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 175/334 (52%), Gaps = 28/334 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N++  A E + AG  + IPTETVYGL  ++ +  A+ +++  K RPA NPLI H+S  
Sbjct: 10  DENSINTAAELIRAGEVVGIPTETVYGLGANAFDEDAVHKIFAAKGRPADNPLIVHISSF 69

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTK 125
             +K   +  P L+   A+ FWPGPLT+++     +D  PL T+  L T   R+P   T 
Sbjct: 70  EEIKPLVTEIPALAEKCAEKFWPGPLTMIM---PKSDKIPLVTSGGLDTVGIRMPSNATA 126

Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +I+  G P+A PSAN SG  S T   H+L+  +   IP I+DGG   +G+EST+++ +
Sbjct: 127 RAIIKASGCPIAAPSANLSGSPSPTTAMHVLND-MDGRIPAIVDGGACGVGVESTVISFE 185

Query: 185 CEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQV--- 236
               +R+LRPG + +E LK       +   +   + E +  +SPGM   HYAP+++V   
Sbjct: 186 G-NGIRLLRPGFISVEDLKEITENVMVDKGVLEMLGEGAKVRSPGMKYKHYAPKAEVTII 244

Query: 237 -----RLRAI---HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                +  A    + +  + L+ F     + +      L  +     +E A +LF+ ++ 
Sbjct: 245 DGSSEQFNAFCRENASADDVLMVFTEADAQGLPQRKTVLGATD----EEQAQHLFDALRG 300

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            D+  A  +        G+G+A+ NRL RAAA R
Sbjct: 301 FDEMCAEKVWARCPRKTGVGLAVYNRLLRAAAFR 334


>gi|228994044|ref|ZP_04153945.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM
           12442]
 gi|228765692|gb|EEM14345.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM
           12442]
          Length = 347

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 171/329 (51%), Gaps = 21/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 17  DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 76

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +K      P ++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 77  SQLKGIVRGIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C
Sbjct: 135 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--C 191

Query: 186 EKKV-RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------S 234
             +V  ILRPGG+  E L+  I +V L+  + DE   P++PGM  +HYAP+        S
Sbjct: 192 TSEVPTILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGS 251

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           +  ++ +    ++     G +  +  ++   A + L+      L   A  L++ ++  D 
Sbjct: 252 RDFIQQLIDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDA 311

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S    I   S PN G+G AI NRL +AA 
Sbjct: 312 SKVDVIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|154687810|ref|YP_001422971.1| YwlC [Bacillus amyloliquefaciens FZB42]
 gi|154353661|gb|ABS75740.1| YwlC [Bacillus amyloliquefaciens FZB42]
          Length = 346

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 171/332 (51%), Gaps = 19/332 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S TD   + +A E L     +A PTETVYGL  ++ N  A+ ++YE K RP+ NPLI H
Sbjct: 14  LSTTDPQ-ITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +S IS + +  S  P  +  L KLFWPG LTLVL       + P  TA L+T   R+P  
Sbjct: 73  ISHISQLDRFISHIPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI + G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST++
Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL- 238
           +   ++ V +LRPGG+  E ++ A    L  +   +E   P SPGM  +HYAP + + + 
Sbjct: 191 SCTGKQPV-LLRPGGVTKEQIESAAGPILVDKGLTEEDEVPISPGMKYTHYAPSAPMAIA 249

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288
               R I         R   + I   E    S     T        L+  A  L++ ++ 
Sbjct: 250 VGGARRIQELADAYKSRGKRIGILTTEENADSYQADYTKVCGRRADLETVASALYDALRS 309

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D++    I   S P+ G+G+AI NRL +AA 
Sbjct: 310 FDEAEVDMIISESFPDTGVGLAIMNRLMKAAG 341


>gi|257870911|ref|ZP_05650564.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus gallinarum EG2]
 gi|257805075|gb|EEV33897.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus gallinarum EG2]
          Length = 342

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 178/328 (54%), Gaps = 24/328 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + L AG  +A PTETVYGL  ++  P A+ ++Y +K RP+ NPLI H++D   +K
Sbjct: 11  LSEAAKILAAGGLVAFPTETVYGLGANALLPEAVAQVYAVKGRPSDNPLIVHLADPEQLK 70

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            +  ++ P +  L   FWPGPLTL+  + + + +  + T  L TA FR+P    T  +I+
Sbjct: 71  DYVDNLHPAAEKLMAKFWPGPLTLIFSIKNNS-LPSIVTGGLSTAAFRMPANKKTLSVIK 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QCEKK 188
               PL  PSAN SG+ S T+ +H+L   +  +I  +ID G ++IG+EST++++      
Sbjct: 130 QAHVPLVGPSANTSGKPSPTSAEHVL-HDLKGKIAGVIDDGTTRIGVESTVLDLSDPTAN 188

Query: 189 VRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             ILRPG +  E L+  +  E+E   + V E   P++PGM   HYAP ++V +      P
Sbjct: 189 PMILRPGAVTKEQLETVLGSEVEIDKHLVSEGERPKAPGMKYKHYAPDTKVVMVRSEDWP 248

Query: 246 ------REALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDS- 292
                 ++  +R G +   +I      E A + +    T  ++ AA  LF  ++  D+S 
Sbjct: 249 AALDWVKQKRLRAGVLAGPSICETARFETAAVYMYADDT--VEAAAKGLFAGLRALDESI 306

Query: 293 -GASSIAFSSIPNHGLGIAINNRLERAA 319
            G   I  ++ P  G+G A  NRL++AA
Sbjct: 307 AGLEIILAAAFPETGMGSAYMNRLKKAA 334


>gi|257880059|ref|ZP_05659712.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933]
 gi|257891150|ref|ZP_05670803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410]
 gi|257893964|ref|ZP_05673617.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408]
 gi|260560328|ref|ZP_05832504.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68]
 gi|257814287|gb|EEV43045.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933]
 gi|257827510|gb|EEV54136.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410]
 gi|257830343|gb|EEV56950.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408]
 gi|260073673|gb|EEW61999.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68]
          Length = 331

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 173/328 (52%), Gaps = 22/328 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPLI HV+    VK
Sbjct: 1   MQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVK 60

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T ++IE
Sbjct: 61  EYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRIPDNKKTLEVIE 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++     +
Sbjct: 120 LSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAM 178

Query: 190 -RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238
             ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +       
Sbjct: 179 PMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWS 238

Query: 239 RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS-- 292
            A+    +   IR G +    I + +     ++ +     ++ AA  LF  ++  D+   
Sbjct: 239 TAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTL 297

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLDLIFVQVYPETGLGNAYMNRLKKAAG 325


>gi|228942472|ref|ZP_04105009.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975404|ref|ZP_04135960.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982041|ref|ZP_04142334.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407]
 gi|228777705|gb|EEM25979.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407]
 gi|228784386|gb|EEM32409.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817214|gb|EEM63302.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326943123|gb|AEA19019.1| SUA5 protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 346

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G       +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|20806674|ref|NP_621845.1| putative translation factor (Sua5) [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515125|gb|AAM23449.1| putative translation factor (Sua5) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 355

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 173/331 (52%), Gaps = 32/331 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E +  G  +A PTETVYG+  +S +  A++R++  K RP  NPLI H++ +  V + A
Sbjct: 21  AAEVIKKGGLVAFPTETVYGIGANSFDEEAVKRIFIAKGRPQDNPLILHIALMDQVYELA 80

Query: 75  SVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           +  P  +  LA  FWPGPLT+VL    +  +  ++TA + T   R+P       LI+  G
Sbjct: 81  AEFPEKAKKLAHRFWPGPLTVVLK--KSDKVPYVNTAGMNTVAIRMPSNPIAHLLIKRAG 138

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P++ PSAN SG+ S T+  H++     K + +IIDGG   +GLEST+V++  E  V IL
Sbjct: 139 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGLESTVVDLTEEVPV-IL 196

Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           RPG + +E LK  +  V+L+  +    DE   P+SPGM   HY+P+++V    I   P +
Sbjct: 197 RPGAVTLEMLKEVLGEVKLDPSLLTRPDENIKPKSPGMKYKHYSPKAEVY---IVKGPLD 253

Query: 248 ALIR----FGNVPIKNIENAIISLNLSKTGKLKEA--------------AFNLFNYMKIA 289
            +++         +KN +   I   +  + + KE               A NLF  ++  
Sbjct: 254 KVVKKIQQLAKNQLKNGKKVGIMATVQTSTQYKEGEIIVVGDRDKPETIAKNLFETLREF 313

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D  G   +   S     +G+AI NRLE+AA 
Sbjct: 314 DRRGVEVVFAESFNYDDIGLAIMNRLEKAAG 344


>gi|320161912|ref|YP_004175137.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1]
 gi|319995766|dbj|BAJ64537.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1]
          Length = 360

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 178/340 (52%), Gaps = 37/340 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SD 66
           +AL +A E L +G  +A PTETVYGL  ++ +  A++R++E K RPA +PLI H+     
Sbjct: 19  DALLEATECLRSGGLVAFPTETVYGLGGNALDGRAVQRIFEAKGRPANDPLIVHLPSADA 78

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
           + MV K  ++  +   LA+ FWPGPLTL+   L   D  PLS TA L T   RVP     
Sbjct: 79  LPMVVK--TIPTIVSTLAEHFWPGPLTLI---LPRGDNVPLSVTAGLDTVAVRVPSHPVA 133

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L++  G  +A PSANR G +S T+ +H+L   +   I +++DGG + IG+EST++++ 
Sbjct: 134 QALLQMSGLAIAAPSANRFGGVSPTSAEHVL-RDLEGRIEMVLDGGSTPIGVESTVLDIT 192

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
                RILRPGG+  E L+  +  VE LE    +     SPG+L  HYAP    RL  + 
Sbjct: 193 APIP-RILRPGGISREALEAVLGRVELLERKASQEEAQASPGLLDKHYAPH-HARLILLE 250

Query: 243 VNPREAL---------------IRFGN-VPIKNIEN------AIISLNLSKTGKLKEAAF 280
           +   + L               +R G  V  +++        A+  L L     L   A 
Sbjct: 251 IPQTQELWEEFTHQVAQAKKEGLRVGALVADEDLTYLDAHFPALARLALGSLSDLAAVAR 310

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           NL+  M+  D++G   +        GLG+AI +RL RAA+
Sbjct: 311 NLYAGMRAMDEAGIDILLVRDFGTGGLGLAIRDRLYRAAS 350


>gi|268610025|ref|ZP_06143752.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus flavefaciens FD-1]
          Length = 337

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 176/349 (50%), Gaps = 47/349 (13%)

Query: 1   MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M  + ++DS A L KA + +  G  + IPTETVYGL  D+ N  A+R ++  K RPA NP
Sbjct: 1   MDTVLLSDSEADLLKAAKLIKDGNIVGIPTETVYGLGADASNEAAVRNIFAAKGRPADNP 60

Query: 60  LICHVSDIS-MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D S  VK  +S+  L+  LA+ F PGPLT+VL       I  +++  L T   R
Sbjct: 61  LIVHLADFSHAVKYTSSIPQLAYRLAERFCPGPLTMVLP--KNDSIPMVTSGGLDTVGIR 118

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP      ++IE  G P+A PSAN SG  S T+  H++ + +  ++  I+DGG S+ G+E
Sbjct: 119 VPSHPVMHRIIELSGCPIAAPSANTSGYPSPTSAAHVM-NDMNGKVAAIVDGGESEFGVE 177

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-------------STPQSPG 224
           ST++ ++ E  VRILRPG +  E L       LE C DE                  SPG
Sbjct: 178 STVIAIEGESTVRILRPGCITREML-------LELC-DEVIIDHAILNELAAGEKAASPG 229

Query: 225 MLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------- 274
           M   HY+P++ +      V     L  F +   K+      SL   + G+          
Sbjct: 230 MKYKHYSPKADI------VMVEGDLDSFIDYVSKHDPENTFSLIYDEDGEKFPYRYMTYG 283

Query: 275 ---LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              L++A   +F  ++  D+ GA  +   +    G+G+A+ NRL RAA 
Sbjct: 284 GTSLQQAHL-IFAKLRELDEIGAEKVFVRAPSKDGVGLAVYNRLIRAAG 331


>gi|227552471|ref|ZP_03982520.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX1330]
 gi|227178383|gb|EEI59355.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX1330]
          Length = 341

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 173/332 (52%), Gaps = 22/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A + L AG  +A PTETVYGL  ++  P  +++++ +K RP  NPLI HV+  
Sbjct: 7   DETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             VK++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T 
Sbjct: 67  EQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++  
Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSD 184

Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
              +  ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P + V +   
Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTCVLMVRE 244

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIAD 290
                A+    +   IR G +    I + +     ++ +     ++ AA  LF  ++  D
Sbjct: 245 GDWSTAVQW-AKNKKIRVGVIASPEISDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLD 303

Query: 291 DS--GASSIAFSSIPNHGLGIAINNRLERAAA 320
           +   G   I     P  GLG A  NRL++AA 
Sbjct: 304 EPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|56965628|ref|YP_177362.1| translation factor SUA5 [Bacillus clausii KSM-K16]
 gi|56911874|dbj|BAD66401.1| translation factor SUA5 [Bacillus clausii KSM-K16]
          Length = 342

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 180/330 (54%), Gaps = 14/330 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I S   +  +++A  ++     IA PTETVYGL  ++ +  A+ +++  K RP+ NPLI 
Sbjct: 15  IDSDKQTEMIQEAALWIKQNKLIAFPTETVYGLGANALSYEAVAQIFAAKGRPSDNPLIV 74

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H+ D S + K     PL+ + L   FWPG LTL+L+  +   I    TA L T   R+P 
Sbjct: 75  HIGDSSQLDKLVKSIPLNANKLMAAFWPGALTLILE--AKEAIAENVTAGLSTVGVRMPS 132

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                KL++  G P+A PSAN SG+ S T   H++ + +  +I  I+DGG + IGLEST+
Sbjct: 133 HPVALKLLQECGLPVAAPSANMSGRPSPTTAAHVI-ADLDGKIDGIVDGGSTGIGLESTV 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDET-STPQSPGMLKSHYAPRSQVRL 238
           ++V  +    + RPGG+ +E ++  I  ++++  ++   S P+SPGM  +HYAP ++V L
Sbjct: 192 LDV-SKPTPMLYRPGGVSVEEIEAVIGKIDIDPALETADSAPKSPGMKYTHYAPNAEVIL 250

Query: 239 ----RAIHVNPREALIRFGNVPI-KNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292
                +IH    EA      V +      A    ++ + G+ L+  A  L+  ++  D+ 
Sbjct: 251 VDSDDSIHHLVAEAKKEGRKVAVFATTGTADYKADIVRRGESLEHTAHILYGVLRDFDEQ 310

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           GA  I   ++P  G+G AI NRLE+AA  +
Sbjct: 311 GADIIYVKTVPTEGVGRAIMNRLEKAAGGK 340


>gi|94971118|ref|YP_593166.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
 gi|94553168|gb|ABF43092.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
          Length = 321

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 167/325 (51%), Gaps = 18/325 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD   ++ A   L AG  ++ PTETVYGL  ++ +  A+ R+Y  K RPA +PLI HV 
Sbjct: 1   MTDPAEIQAAARLLKAGRLVSFPTETVYGLGANALDAEAVARIYAAKGRPATSPLIVHVD 60

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            + M K   +  P +   LA+ FWPGPLTLVL       + P+  A L T   R+P    
Sbjct: 61  SVEMAKSLVTAWPDAADALARAFWPGPLTLVLPARDV--VPPIVRAGLPTVGVRMPDHPL 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + LI   G PLA PSANR  QIS T  +H+   S+   + +++DGG   +G+EST++++
Sbjct: 119 AQALIRAAGVPLAAPSANRFTQISPTTAEHV-RRSLGDSVEMVLDGGPCAVGIESTVLSL 177

Query: 184 QCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
              + V +LRPGG+   +IE +   I    E    E + P SPGM   HY+PR+++ L  
Sbjct: 178 AGPRAV-LLRPGGVTRAQIEAVIGPIGDADE--APEGAHP-SPGMHPRHYSPRTRLLLVK 233

Query: 241 IHVNPREA---LIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADDSGA 294
               PR+     + +G          +   NL+        ++ A  L++ +  ADD G 
Sbjct: 234 DGEVPRDGRGIYLSYGRKSPPYAARRMGHPNLTVVEMPASAEKYAARLYDELHRADDGGF 293

Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319
             IA   +P       + +R++RAA
Sbjct: 294 DWIAVEQVPETPEWEGVRDRVKRAA 318


>gi|126459742|ref|YP_001056020.1| translation factor SUA5 [Pyrobaculum calidifontis JCM 11548]
 gi|126249463|gb|ABO08554.1| translation factor SUA5 [Pyrobaculum calidifontis JCM 11548]
          Length = 342

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 170/331 (51%), Gaps = 20/331 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +++A E L  G  +A PTETVYGL   + +    R+++++K+RP  NPLI HV  +
Sbjct: 11  DPDVVKRAAEVLRRGGVVAAPTETVYGLFAHAYSEAGCRKVFQVKRRPMDNPLIVHVDSV 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            M +  A + P    + +  WPGP+T+V+   S   +    TA L T   R P       
Sbjct: 71  EMAETVAYIPPELRDILRRVWPGPITVVVK--SRGVLPRCVTAGLDTVAVRAPAHPIPLA 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I   G P+A PSANR+G+ S T  +H+L   +  E+ LI+DGG +  G+ESTIV+V   
Sbjct: 129 IIRELGAPIAGPSANRAGRPSPTTAEHVL-EDLGDEVDLIVDGGPTFFGVESTIVDVTRT 187

Query: 187 KKVRILRPGGLEIETLKRAIS-VE---LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             V +LRPG   +E L++    VE   +   + E     +PGM   HYAP +   L  +H
Sbjct: 188 PPV-LLRPGPFTVEELEKFFGRVEVPPVARGLAEADVALAPGMKYRHYAPETP--LVIVH 244

Query: 243 VNPREAL-------IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
            +  EA+       +R   + +     A  ++ L   G L EAA NL++ ++  D  G  
Sbjct: 245 FDLEEAVKWLEARGLRVAVLCVGECPKAKRTIPLG--GDLYEAAKNLYDALRQLDKLGVD 302

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
                ++   G+G+AI NRL +A+  R   +
Sbjct: 303 IGVVPAVEERGIGLAIMNRLRKASGHREARR 333


>gi|229076540|ref|ZP_04209500.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18]
 gi|229099758|ref|ZP_04230683.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29]
 gi|228683647|gb|EEL37600.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29]
 gi|228706573|gb|EEL58786.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18]
          Length = 342

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 169/327 (51%), Gaps = 25/327 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L     +A PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 17  LQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 76

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              + + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 77  GIVNEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E   
Sbjct: 135 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIPT 193

Query: 190 RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP++ +   +I    RE
Sbjct: 194 -ILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPL---SIVEGSRE 249

Query: 248 ALIRFGN--------------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
            + R  +                 +++ +A + L+      L   A  L++ ++  D S 
Sbjct: 250 FIQRLVDKKKDEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASE 309

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I   S PN G+G AI NRL +AA 
Sbjct: 310 VDVIFSESFPNDGIGNAIMNRLTKAAG 336


>gi|229118821|ref|ZP_04248170.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3]
 gi|228664622|gb|EEL20115.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3]
          Length = 342

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 169/327 (51%), Gaps = 25/327 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L     +A PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S + 
Sbjct: 17  LQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 76

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              + + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 77  GIVNEIPPVAEKLMEHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPVALALIE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E   
Sbjct: 135 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIPT 193

Query: 190 RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP++ +   +I    RE
Sbjct: 194 -ILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPL---SIVEGSRE 249

Query: 248 ALIRFGN--------------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
            + R  +                 +++ +A + L+      L   A  L++ ++  D S 
Sbjct: 250 FIQRLVDKKKDEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASE 309

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I   S PN G+G AI NRL +AA 
Sbjct: 310 VDVIFSESFPNDGIGNAIMNRLTKAAG 336


>gi|257877103|ref|ZP_05656756.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC20]
 gi|257811269|gb|EEV40089.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC20]
          Length = 342

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 178/344 (51%), Gaps = 35/344 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I D   L +A   L  G  +A PTETVYGL   +  PTA+ ++Y++K RP+ NPLI H++
Sbjct: 5   IFDQTQLNEAAAILAEGGLVAFPTETVYGLGASALLPTAVAQVYQVKGRPSDNPLIVHIA 64

Query: 66  DISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +   ++     KH    P +  L + FWPGPLTL+  +   + +  + T  L TA FR+P
Sbjct: 65  EPEQLEPFVDNKH----PFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRMP 119

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T  LI+    PL  PSAN SG+ S T+  H+    +  +I  I+D G+++IG+EST
Sbjct: 120 NNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVEST 178

Query: 180 IVNVQCEKKVR-ILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           ++++        ILRPG +  E L+  +  ++   ++ V E+  P++PGM   HYAP + 
Sbjct: 179 VLDLSDPMAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNTN 238

Query: 236 VRLRAIHVNP------REALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLF 283
           V +      P      +E   + G +    I      E A I L    +  ++ A   LF
Sbjct: 239 VMMVNDQDWPAAMAWAKEQQFKVGVLAGPTIAEQVRFEAAAIYLFFDDS--VEAATKGLF 296

Query: 284 NYMKIADDSGAS-SIAFS-SIPNHGLGIAINNRLERAAAPRNQS 325
             ++  D+S A   + F+ + P  GLG A  NRL++AA   NQS
Sbjct: 297 AGLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA---NQS 337


>gi|257885491|ref|ZP_05665144.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501]
 gi|257821347|gb|EEV48477.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501]
          Length = 331

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 174/328 (53%), Gaps = 22/328 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L AG  +A PTETVYGL  ++  P A+++++ +K RP  NPLI HV+    VK
Sbjct: 1   MQEAAEALKAGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVK 60

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T ++I+
Sbjct: 61  EYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIK 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++     +
Sbjct: 120 LSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAM 178

Query: 190 -RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238
             ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +       
Sbjct: 179 PMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWS 238

Query: 239 RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS-- 292
            A+    +   IR G +    I + +     ++ +     ++ AA  LF  ++  D+   
Sbjct: 239 TAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTL 297

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLDLIFVQVYPETGLGNAYMNRLKKAAG 325


>gi|282892124|ref|ZP_06300599.1| hypothetical protein pah_c207o060 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498019|gb|EFB40363.1| hypothetical protein pah_c207o060 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 314

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/315 (36%), Positives = 168/315 (53%), Gaps = 14/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KACE L  G  +A+PTETVYGLA   R+P AI  ++ +K RPA NPLI HVS    + 
Sbjct: 5   LEKACELLSQGEVVALPTETVYGLAASLRHPNAIENIFALKNRPANNPLIIHVSHYEQIY 64

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            +A S+ P  + LA+ FWPGPLTLVL +   T I     A+L TA FR+P    ++ +I+
Sbjct: 65  PYAQSIPPYFVKLAQHFWPGPLTLVLPIQPAT-IPNTVRADLTTAAFRIPQHPLSQAVIK 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+ +PSAN SG+ S T    +         P ++DGG    GLESTI+    + + 
Sbjct: 124 QVG-PVVMPSANLSGRPSATQASRV-EEDFGTAFP-VLDGGGCTCGLESTILYF-IDNQW 179

Query: 190 RILRPGGLEIETLKRAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            I+R G L  E  +  +  +      ET  + P  PG L  HYAP++++ L     +P E
Sbjct: 180 EIVRLGSLAPEQFQPILGYQ-PVIRQETNQAKPLCPGQLYRHYAPQAKLLLDN-KASP-E 236

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF-SSIPNHG 306
           ++        +   N  I  +L K+   ++ A NL++ ++  DD+    I   S  P  G
Sbjct: 237 SIGYVLGFSDRQYPNCKI-FSLGKSDNPEQVAENLYDTLRSLDDAKIQCIWVDSDFPQKG 295

Query: 307 LGIAINNRLERAAAP 321
           L + I+ RL+RA+ P
Sbjct: 296 LWLTISERLKRASYP 310


>gi|257867025|ref|ZP_05646678.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC30]
 gi|257873360|ref|ZP_05653013.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC10]
 gi|257801081|gb|EEV30011.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC30]
 gi|257807524|gb|EEV36346.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC10]
          Length = 342

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 178/344 (51%), Gaps = 35/344 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I D   L +A   L  G  +A PTETVYGL   +  PTA+ ++Y++K RP+ NPLI H++
Sbjct: 5   IFDQTQLNEAAAILAEGGLVAFPTETVYGLGASALLPTAVAQVYQVKGRPSDNPLIVHIA 64

Query: 66  DISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +   ++     KH    P +  L + FWPGPLTL+  +   + +  + T  L TA FR+P
Sbjct: 65  EPEQLEPFVDNKH----PFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRMP 119

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T  LI+    PL  PSAN SG+ S T+  H+    +  +I  I+D G+++IG+EST
Sbjct: 120 NNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVEST 178

Query: 180 IVNVQCEKKVR-ILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           ++++        ILRPG +  E L+  +  ++   ++ V E+  P++PGM   HYAP + 
Sbjct: 179 VLDLSDPTAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNTN 238

Query: 236 VRLRAIHVNP------REALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLF 283
           V +      P      +E   + G +    I      E A I L    +  ++ A   LF
Sbjct: 239 VLMVNDQDWPAAMAWAKEQQFKVGVLAGPTIAEQVRFEAAAIYLFFDDS--VEAATKGLF 296

Query: 284 NYMKIADDSGAS-SIAFS-SIPNHGLGIAINNRLERAAAPRNQS 325
             ++  D+S A   + F+ + P  GLG A  NRL++AA   NQS
Sbjct: 297 AGLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA---NQS 337


>gi|229014495|ref|ZP_04171613.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048]
 gi|229064976|ref|ZP_04200274.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603]
 gi|229136144|ref|ZP_04264897.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196]
 gi|229170033|ref|ZP_04297725.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621]
 gi|228613458|gb|EEK70591.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621]
 gi|228647303|gb|EEL03385.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196]
 gi|228716277|gb|EEL67989.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603]
 gi|228746845|gb|EEL96730.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048]
          Length = 346

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 170/326 (52%), Gaps = 23/326 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVREIPPVAEKLMEHFWPGPLTIILP--RKKGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C  +V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSEV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------- 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP++ + +        
Sbjct: 196 PTILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 -RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
            R +    +E   + G       +++ +A + L+      L   A  L++ ++  D S  
Sbjct: 256 QRIVDEKKKEGF-KVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEV 314

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I   S PN G+G AI NRL +AA 
Sbjct: 315 DVIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|116494653|ref|YP_806387.1| putative translation factor (SUA5) [Lactobacillus casei ATCC 334]
 gi|116104803|gb|ABJ69945.1| translation factor SUA5 [Lactobacillus casei ATCC 334]
          Length = 333

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D  MV ++
Sbjct: 12  EAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQY 71

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A++ PL+  L + FWPGPLT++L++L    +    T  L+TA FR P    T+KLI T G
Sbjct: 72  ATITPLAAKLMQAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKLIATAG 130

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ES I+++       IL
Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTPPA-IL 188

Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           RPG +   E+E L   +     + V +   P++PGM   HYAP +QV
Sbjct: 189 RPGAIGPDELEPLIGHVDTAAHH-VGQNEAPKAPGMKYKHYAPAAQV 234


>gi|312142774|ref|YP_003994220.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium sp.
           'sapolanicus']
 gi|311903425|gb|ADQ13866.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium sp.
           'sapolanicus']
          Length = 350

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 175/345 (50%), Gaps = 30/345 (8%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I +  D  A+ KA E L  G  +AIPTETVYGLA D+ NP A++R++E K RP  NPLI 
Sbjct: 8   IKANNDDQAVEKAAELLHKGELVAIPTETVYGLAADALNPEAVKRIFEAKGRPQDNPLII 67

Query: 63  HVSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRV 119
           H+     ++K     V   +  L   +WPGPLTL+      + + P  T A L T   R+
Sbjct: 68  HIGAQKDLEKLIAEKVSKRAQKLIDKYWPGPLTLI---FKKSSLVPAETSAGLDTVAVRM 124

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T KL++  G  LA PSAN SG  S T  +H+ +    K IPLI+DGG  ++G+ES
Sbjct: 125 PSHPVTIKLLQKSGLVLAAPSANTSGYPSPTRAEHVYADLKTK-IPLILDGGSCEVGVES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQ 235
           T++++  +K+  +LRPGG+  E L   +  EL+   +   + Q   SPGM   HYAP+  
Sbjct: 184 TVIDL-SQKEAVVLRPGGISREELAEFLGEELKLNNNLEKSTQGVISPGMKYRHYAPQKN 242

Query: 236 VRLRAIHVNPREALIRFGNVPIKNI-------------ENAIISLNLSKTGKLKEAAFNL 282
           + +     +P +  + F     K I             E+ +  +      K  E A  L
Sbjct: 243 LYI----FDPVKKDLLFKKAEQKKIALIISRQTELGQKEDQLKVIRAFDREKPAELARKL 298

Query: 283 FNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           F  ++  D D     I    +   GLG  + NR+ +AAA ++++Q
Sbjct: 299 FALLRELDSDPEVEEIYIEELKEEGLGETLMNRIYKAAAAKDEAQ 343


>gi|163943013|ref|YP_001647897.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis
           KBAB4]
 gi|163865210|gb|ABY46269.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 346

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 170/326 (52%), Gaps = 23/326 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVREIPPVAEKLMEHFWPGPLTIILP--RKKGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C  +V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSEV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------- 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP++ + +        
Sbjct: 196 PTILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 -RAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
            R +    +E   + G +  +  +   +A + L+      L   A  L++ ++  D S  
Sbjct: 256 QRIVDEKKKEGF-KVGVLTTEEYQRVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEV 314

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I   S PN G+G AI NRL +AA 
Sbjct: 315 DVIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|319650889|ref|ZP_08005026.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2]
 gi|317397487|gb|EFV78188.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2]
          Length = 347

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/324 (33%), Positives = 164/324 (50%), Gaps = 18/324 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L     +A PTETVYGL  ++ N  A+R+++E K RP+ NPLI H++D   +   
Sbjct: 23  QAADLLKKNEVVAFPTETVYGLGGNAENDEAVRKIFEAKGRPSDNPLIIHIADKGKLDAF 82

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
            +  P +   L   FWPGPLTL+ +L      H  +TA+L T   R+P       L+   
Sbjct: 83  VTEIPQNAQALMDRFWPGPLTLIFNLKEGVLSH-YATADLSTVAVRMPDHPVALALLNKT 141

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSANRSG+ S T   H+    +   I  ++DGG + +G+EST+V+   +  V I
Sbjct: 142 GLPIAAPSANRSGRPSPTTADHVW-EDLNGRIAGLVDGGPTGVGVESTVVDCTGDVPV-I 199

Query: 192 LRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRL---------RA 240
           LRPGG+  E L+ A+   +      DE+  P+SPGM   HYAP + + L           
Sbjct: 200 LRPGGITREQLEEAVGEIIVDPALADESQAPKSPGMKYRHYAPDAPLYLVEGTKEDIQYF 259

Query: 241 IHVNPREALIRFGNVPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
           +    +E L        +N+E   A       +  KL+  A +L+  ++  + + A  I 
Sbjct: 260 VEDKKKEGLSVGVLTTSENLEFYRADFIYACGQRDKLETVASSLYEALRYFNTTNADIIF 319

Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322
               P  G+G AI NRL +AA  R
Sbjct: 320 CEMFPGEGVGHAIMNRLMKAAGHR 343


>gi|311070214|ref|YP_003975137.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           atrophaeus 1942]
 gi|310870731|gb|ADP34206.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           atrophaeus 1942]
          Length = 346

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/329 (33%), Positives = 173/329 (52%), Gaps = 18/329 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    + +A + L     +A PTETVYGL  ++ +  A+ ++YE K RP+ NPLI H++D
Sbjct: 16  TKDPQIAQAADLLRQNEVVAFPTETVYGLGANAESTEAVMKIYEAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS + + A      +  L K FWPG LTLVL       + P  TA L+T   R+P     
Sbjct: 76  ISQLDRIAGPASEKAKKLMKQFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDHPLA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI + G P+A PSAN SG+ S T  +H+    +   I  IIDGG + +G+EST+++  
Sbjct: 135 LALIRSSGLPIAAPSANLSGKPSPTRAEHV-EHDLNGRIAGIIDGGATGLGVESTVISCS 193

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPR--------S 234
            +  V +LRPGG+  E ++  I   L  +   ++  TP SPGM  +HYAP         S
Sbjct: 194 EDMPV-LLRPGGITKEQIEEEIGEVLVDKGLTEKNETPISPGMKYTHYAPSAPLAVTEGS 252

Query: 235 QVRLRAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
             R++A+    +++  R G +  +   +I  A    +  +  +L+  A +L++ ++  D+
Sbjct: 253 AERIQALVREYQQSGKRVGVLTTEERADIYEADFVKSCGRRDQLETVAASLYDALRSFDE 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                I   + PN G+G AI NRL +AA 
Sbjct: 313 VKVDFIIAEAFPNTGVGHAIMNRLMKAAG 341


>gi|332971797|gb|EGK10745.1| Sua5/YciO/YrdC/YwlC family protein [Desmospora sp. 8437]
          Length = 361

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 172/348 (49%), Gaps = 34/348 (9%)

Query: 1   MQIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
            QI   TD +    +R+A   L  G  +A PTETVYGL  D+ +P A+  +Y  K RP+ 
Sbjct: 15  WQIDGATDLDQNPVIREAAALLREGHLVAFPTETVYGLGADATDPDAVASIYRAKGRPSD 74

Query: 58  NPLICHVSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           NPLI H++D   + +      +P  L LA+ FWPGPLTL+L      ++ P  TA L T 
Sbjct: 75  NPLIVHLADEQGLSEWVREIPEPGRL-LARRFWPGPLTLILP--HRGNLAPQVTAGLPTV 131

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P       L++  G P+A PSANRSG+ S T   H+  + +   I  I+DGG++ +
Sbjct: 132 GVRIPSHPVALALLKNCGLPVAAPSANRSGKPSPTRAGHVW-TDLGGRIDAILDGGVTGV 190

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSH 229
           G+EST+V+V     V +LRPGG+ +E L+  +    E  VD     E  +P+SPGM   H
Sbjct: 191 GVESTVVDVTVNPPV-LLRPGGVTLEMLREVVR---EVRVDPGLREEWESPRSPGMKYRH 246

Query: 230 YAP---------RSQVRLRAIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGK 274
           YAP           + ++  I     EA+       I       ++  A   +      +
Sbjct: 247 YAPGGEMWVITGEGEAQVSRIQRMADEAMQSGKKTGILCTEEHASLYRADWIVVCGTRSR 306

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
               A  L+  ++  D+ GA  IA    P  G+  ++ NRL +AA  R
Sbjct: 307 PDTIARELYGALRRFDEVGAQWIAAEGFPPRGVLHSVMNRLSKAAEGR 354


>gi|124515366|gb|EAY56876.1| SUA5/yciO/yrdC family [Leptospirillum rubarum]
 gi|206601667|gb|EDZ38150.1| SUA5/yciO/yrdC family [Leptospirillum sp. Group II '5-way CG']
          Length = 339

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 161/324 (49%), Gaps = 25/324 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E L  G  + IPTETVYGL  D+ NP A+RR++ IK RP  +PLI H+  I  ++
Sbjct: 6   IRQAVEHLKQGRTVVIPTETVYGLGADASNPEAVRRIFAIKGRPPGHPLIVHIEKIDCLE 65

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A ++ P+++ LA+ FWPGPLTLVL      ++ P  T   +T   RVP       L+ 
Sbjct: 66  SWAKTIPPVAVRLAERFWPGPLTLVLP--RRREVLPEVTGGQETVALRVPSHPVITALLR 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G  +A PSANR G++S T+ + +          +I++GG    GLESTI+  Q    V
Sbjct: 124 AFGGGIAAPSANRFGRLSPTSARDVY-EEFKDAAGMILEGGPCSFGLESTILGFQDGHPV 182

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LRPG L   TL+  + V +        +P+ PG   SHY P + + L      P E L
Sbjct: 183 -LLRPGALSTGTLEEFLGVRILRSAAGADSPRVPGSSLSHYQPDTPLELL-----PGEDL 236

Query: 250 IR-----------FGNVPIKNIENAIISLNLSKTGKLKEA-AFN--LFNYMKIADDSGAS 295
           +R            G +  +  E       L+     +EA A+   L+  +   D +G  
Sbjct: 237 VRRSLSLSAQGRKVGILYRRAEEERFHGDGLTPVPMPREAEAYGQALYAVLHFFDRAGVD 296

Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319
            I     P  G   A+N+RL RAA
Sbjct: 297 RILVEFPPQTGEWEAVNDRLGRAA 320


>gi|227535364|ref|ZP_03965413.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186960|gb|EEI67027.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 333

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D  MV ++
Sbjct: 12  EAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADADMVGQY 71

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A++ PL+  L + FWPGPLT++L++L    +    T  L+TA FR P    T+KLI T G
Sbjct: 72  ATITPLAAKLMEAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKLIATAG 130

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ES I+++       IL
Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTPPA-IL 188

Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           RPG +   E+E L   +     + V +   P++PGM   HYAP +QV
Sbjct: 189 RPGAIGPDELEPLIGHVDTAAHH-VGQNEAPKAPGMKYKHYAPAAQV 234


>gi|187933769|ref|YP_001884698.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721922|gb|ACD23143.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 349

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + +  G  +A PTETVYGL  D+ N  A+++++  K RP  NPLI HV+  
Sbjct: 14  DEEKMKEAAQIIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           ++      +  ++  L   +WPGPLTL+L   S   I  +++ANL T   R+P      K
Sbjct: 74  NIQSLVEDIPDIAQRLIDKYWPGPLTLILKKKSI--IPDMTSANLDTIGIRMPNNEIALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE     +A PSAN SG+ S T+V+  +   +   +  I+ G  S IGLESTI++    
Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-DDLSGRVDCIVGGKKSDIGLESTILDCTVN 190

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRL--- 238
             + +LRPGG+ +E LK   + +E++  + + ST    P++PGM   HYAP+++V++   
Sbjct: 191 PPI-VLRPGGITLEMLKEIDNRIEIDGAIMKKSTGDLKPKAPGMKYRHYAPKAKVKIISG 249

Query: 239 -RAIHVNPREALIRF-----GNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYM 286
            R   +   + ++ +       V I  I+      N  I + L     L   A NLF  +
Sbjct: 250 ERKKTIEKIKEIVDYYIDNNKKVCILTIQENEKEYNKGIKVVLGSKENLLMVAQNLFESL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   +    G+GIAI NRL +AA 
Sbjct: 310 RKCDDLGADVILAEAYEEKGVGIAIMNRLNKAAG 343


>gi|325568365|ref|ZP_08144732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325158134|gb|EGC70287.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 342

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 179/344 (52%), Gaps = 35/344 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I D + L +A   L  G  +A PTETVYGL   +  P A+ ++Y++K RP+ NPLI H++
Sbjct: 5   IFDQSQLNEAAAILAEGGLVAFPTETVYGLGASALLPNAVAQVYQVKGRPSDNPLIVHIA 64

Query: 66  DISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +   ++     KH    P +  L + FWPGPLTL+  +   + +  + T  L TA FR+P
Sbjct: 65  EPEQLEPFVDNKH----PFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRMP 119

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T  LI+    PL  PSAN SG+ S T+  H+    +  +I  I+D G+++IG+EST
Sbjct: 120 NNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVEST 178

Query: 180 IVNVQCEKKVR-ILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           ++++        ILRPG +  E L+  +  ++   ++ V E+  P++PGM   HYAP + 
Sbjct: 179 VLDLSDPTAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNTN 238

Query: 236 VRL------RAIHVNPREALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLF 283
           V +       A     +E  ++ G +    I      E A I L    +  ++ A   LF
Sbjct: 239 VMMINDQDWSAAMAWAKEQQLKVGVLAGPTIAEQVRFEAAAIYLFFDDS--VEAATKGLF 296

Query: 284 NYMKIADDSGAS-SIAFS-SIPNHGLGIAINNRLERAAAPRNQS 325
             ++  D+S A   + F+ + P  GLG A  NRL++AA   NQS
Sbjct: 297 AGLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA---NQS 337


>gi|157694091|ref|YP_001488553.1| hypothetical protein BPUM_3340 [Bacillus pumilus SAFR-032]
 gi|157682849|gb|ABV63993.1| hypothetical protein BPUM_3340 [Bacillus pumilus SAFR-032]
          Length = 351

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 173/330 (52%), Gaps = 20/330 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L     +A PTETVYGL  +++   A+ ++YE K RP+ NPLI H++++  + 
Sbjct: 23  IEQAALLLKQNEVVAFPTETVYGLGANAKETEAVMKIYEAKGRPSDNPLIVHIAEVEQLH 82

Query: 72  KHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           + A ++   +  L K FWPG LT+VL     T +    TA L T   R+P      +LI 
Sbjct: 83  EFAQIESERAKALMKAFWPGALTIVLPCKLGT-LSKQVTAGLSTVGVRMPDHPIALELIR 141

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+A PSANRSG+ S T   H+ +S +   I  I+DGG + IG+EST+V+   E  V
Sbjct: 142 TAGLPIAAPSANRSGKPSPTQADHV-ASDLDGRIAGIVDGGSTGIGVESTVVSCVDEIPV 200

Query: 190 RILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRL--------- 238
            ILRPGG+  E L+  + +V ++     +   P SPGM  +HYAP +++ L         
Sbjct: 201 -ILRPGGITKEALEEVVGTVSIDPGLTKKDEAPVSPGMKYTHYAPEAKMYLFHGSDEELQ 259

Query: 239 RAIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           R I     E L + G +     K++  A +  +     K +  A NL+  ++  D++   
Sbjct: 260 RHIQTYQTEGL-KVGVLTTEEKKSLFAADVVFSCGWREKPETIAANLYRVLRQFDETDVD 318

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            I   +    G+G AI NRL++AA  R  S
Sbjct: 319 VIISETFSKQGVGSAIMNRLQKAAGGRTLS 348


>gi|191638152|ref|YP_001987318.1| Translation factor SUA5 [Lactobacillus casei BL23]
 gi|239631746|ref|ZP_04674777.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066211|ref|YP_003788234.1| putative translation factor [Lactobacillus casei str. Zhang]
 gi|190712454|emb|CAQ66460.1| Translation factor SUA5 [Lactobacillus casei BL23]
 gi|239526211|gb|EEQ65212.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438618|gb|ADK18384.1| Putative translation factor (SUA5) [Lactobacillus casei str. Zhang]
 gi|327382182|gb|AEA53658.1| Putative translation factor (SUA5) [Lactobacillus casei LC2W]
 gi|327385379|gb|AEA56853.1| Putative translation factor (SUA5) [Lactobacillus casei BD-II]
          Length = 333

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D  MV ++
Sbjct: 12  EAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAEMVGQY 71

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A++ PL+  L + FWPGPLT++L++L    +    T  L+TA FR P    T+KLI T G
Sbjct: 72  ATITPLAAKLMEAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKLIATAG 130

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ES I+++       IL
Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTPPA-IL 188

Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           RPG +   E+E L   +     + V +   P++PGM   HYAP +QV
Sbjct: 189 RPGAIGPDELEPLIGHVDTAAHH-VGQNEAPKAPGMKYKHYAPAAQV 234


>gi|259046349|ref|ZP_05736750.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella adiacens ATCC
           49175]
 gi|259036986|gb|EEW38241.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella adiacens ATCC
           49175]
          Length = 336

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 174/337 (51%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+    T  N L  A + L  G  ++ PTETVYGL   + +  A+ +++E K RP+ NPL
Sbjct: 1   METQIFTKEN-LDIAAKALQQGEIVSFPTETVYGLGAIATSQEAVLKVFEAKGRPSDNPL 59

Query: 61  ICHVSDI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFR 118
           I H+SDI  M      V  ++L LAK FWPGPLT++L   +   I+ P  +A L T  FR
Sbjct: 60  IVHISDIQQMTSTVEEVPEIALTLAKAFWPGPLTMILK--AKPGIYAPALSAGLPTVSFR 117

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P    T +LI   G PL  PSAN S + S T V+H+    +   I  I+DGG S +G+E
Sbjct: 118 MPNHPLTLELITKVGIPLVGPSANLSTKPSPTKVQHVF-EDMNGRIRGIVDGGSSTVGVE 176

Query: 178 STIVNVQCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
           ST++++  E+   ILRPG +   +IE++   I   +     E   P+SPGM   HYAP++
Sbjct: 177 STVIDLTNEEGPVILRPGVITKEQIESVIGPIQSSVTTKTGEREIPKSPGMKYRHYAPKT 236

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNI----ENAIISL------NLSKTG-KLKEAAFNLF 283
            V +    V      I+      K +    +NAI+         + K G  + +   +LF
Sbjct: 237 PVLVVEGAVESFTKAIQEAQNNGKTVGIMAQNAIVDAVESRVKGIYKMGTSVDDMNRSLF 296

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           + ++  D      I     P  G+GIA  NRL++AA+
Sbjct: 297 DALRTLDHLELDIILAQGAPEEGVGIAYMNRLKKAAS 333


>gi|149200145|ref|ZP_01877169.1| sua5 related protein [Lentisphaera araneosa HTCC2155]
 gi|149136786|gb|EDM25215.1| sua5 related protein [Lentisphaera araneosa HTCC2155]
          Length = 322

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 175/333 (52%), Gaps = 21/333 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I   T+ N ++KA E L     +A  TETVYGL  ++ +P A  ++++ KKRP  +PL
Sbjct: 1   MAIFRGTEEN-IKKAAEHLKNDNLVAFATETVYGLGANALSPPACEKIFKAKKRPKYDPL 59

Query: 61  ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118
           I H+++I  +       P ++L LA+ +WPGPLTLV      TD+ P L T+ L T   R
Sbjct: 60  IVHIAEIYQLSDLVKEIPDVALDLAEAYWPGPLTLV---FKKTDLIPSLITSGLDTVAIR 116

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P       L+     P+A PSAN  G +S T+ +H+  S +  E+ +I+DGG    G+E
Sbjct: 117 MPAHPLALGLLSEAQIPVAAPSANPFGYLSPTSAEHVF-SQLENEVDIILDGGECDWGIE 175

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           STIV+    + + +LR GG+  E ++R   SV+    V E   P +PG L SHYAP +++
Sbjct: 176 STIVDCSSGEAI-LLRQGGISAEDIRRVTGSVQFGKAVLE--RPLAPGQLASHYAPNTKL 232

Query: 237 RLRA------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
            +        I  + +   ++ G+  I+  E  ++S N       K  A NLF+ +   D
Sbjct: 233 MILKSGEVPNIADSAKVGFLQMGSTSIEATEIEVLSEN---EQDFKSIAHNLFSALHRLD 289

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
             G   I    +  + L  AI +RL +AAA R+
Sbjct: 290 SKGLDVIYVYELEGNDLASAIMDRLLKAAAKRS 322


>gi|288554403|ref|YP_003426338.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4]
 gi|288545563|gb|ADC49446.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4]
          Length = 346

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 1   MQIMSITDSNALRK----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
             +  I D +  R+    A  ++  G  +A PTETVYGL  ++ +  AI +++E K RP+
Sbjct: 9   FNVDKINDEDKKREYISDAALWISEGEVVAFPTETVYGLGANALDEKAIAKIFEAKGRPS 68

Query: 57  MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
            NPLI H+++   + +  + + P +  L + FWPGPLT++        I P  TA L T 
Sbjct: 69  DNPLIVHIANRDQLSELVTEITPAAEKLMEAFWPGPLTIIFK--KKGPIAPNVTAGLDTV 126

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      KLI+    P+A PSAN SG+ S T   H+    +   I  ++DGG + +
Sbjct: 127 AIRMPSHPLALKLIKAANVPVAAPSANLSGKPSPTTAAHVY-HDLQGRIAGVVDGGSTGV 185

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-----STPQSPGMLKSH 229
           GLEST+++      + + RPGG+ IE LK  +    E  VD +       P+SPGM  +H
Sbjct: 186 GLESTVLDCSVHPPM-LYRPGGVTIEELKEVVG---EVAVDPSLKNTEDAPRSPGMKYTH 241

Query: 230 YAPRSQV-------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG---KLKEAA 279
           YAP+  +       R++A+    RE   + G +  +       +  +   G    L   A
Sbjct: 242 YAPKGSLTLVHDVSRIQALLDEAREQGKKVGVLTTEERAAEYKADTVIACGAREDLSTVA 301

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             L+  ++  D      I   + PN G+G AI NRLE+AA  R
Sbjct: 302 AKLYEALRQFDQENVDVIYSETFPNEGVGAAIMNRLEKAAGGR 344


>gi|229551969|ref|ZP_04440694.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1]
 gi|229314704|gb|EEN80677.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1]
          Length = 340

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D +MV ++
Sbjct: 12  EAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQY 71

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A++ P +  L   FWPGPLT++L++L    +    T  L+TA FR P    T+KLI T G
Sbjct: 72  ATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKLIATAG 130

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ESTI+++       IL
Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTPPA-IL 188

Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           RPG +   E+E L   +     + V +   P++PGM   HYAP +QV
Sbjct: 189 RPGAIGPHELEPLLGPVD-SAAHHVGKNEAPKAPGMKYKHYAPAAQV 234


>gi|254520295|ref|ZP_05132351.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. 7_2_43FAA]
 gi|226914044|gb|EEH99245.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. 7_2_43FAA]
          Length = 349

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 173/337 (51%), Gaps = 31/337 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A + +  G  +A PTETVYGL  ++ N  A+ +++  K RP  NPLI HVS  
Sbjct: 14  DIEYLKEAADIIYNGGVVAFPTETVYGLGANALNDEAVEKIFNAKGRPQDNPLIVHVSSK 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FTK 125
           ++      V  ++  L   FWPGPLT++   L+  +I P  T ANL T   R+P      
Sbjct: 74  NINNLVKDVPEIAQKLINRFWPGPLTII---LNKKEIIPNRTSANLDTIGIRMPNDKIAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLIE  G P+A PSAN SG+ S T V+  +   +   I  I+ G  S +G+ESTIV+   
Sbjct: 131 KLIELSGCPIAAPSANISGRPSPTEVERCV-EDLSGRIDYILGGERSNVGVESTIVDCTV 189

Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +  + +LRPGG+ +E L+       I   ++   D+   P++PGM   HYAP++  +L+ 
Sbjct: 190 DPPM-VLRPGGVTLEMLQEVCEDIKIDKAIQGKPDKNLKPKAPGMKYRHYAPKA--KLKI 246

Query: 241 IHVNPREALIRFGNVPIKNIEN----AIIS-------------LNLSKTGKLKEAAFNLF 283
           I  N ++ + +   +    IEN    AI+S             ++L     L + A NLF
Sbjct: 247 IKGNKQKTIEKINEIVQNYIENQKEVAILSTDELCSYFNKGKVISLGSEKNLYDVARNLF 306

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  DD     I   +    G+G+AI NRL +AA 
Sbjct: 307 ESLRECDDLNVDIILCQAFDEKGVGLAIMNRLNKAAG 343


>gi|225019404|ref|ZP_03708596.1| hypothetical protein CLOSTMETH_03357 [Clostridium methylpentosum
           DSM 5476]
 gi|224947821|gb|EEG29030.1| hypothetical protein CLOSTMETH_03357 [Clostridium methylpentosum
           DSM 5476]
          Length = 341

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/332 (36%), Positives = 182/332 (54%), Gaps = 30/332 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A++KA   L  G  + +PTETVYGLA ++ NP A+ ++++ K RP  NPLI H+SD+
Sbjct: 15  DEQAIQKAAALLREGDLVGMPTETVYGLAANALNPAALLKIFKAKGRPQDNPLIVHISDL 74

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           SM+    S  P ++  LA+ +WPGPLT++L       I   +TA L++   R P     +
Sbjct: 75  SMLDGLVSRLPTIAKSLAQAYWPGPLTMILP--KGKQIPYEATAGLESVGIRFPSHPVAQ 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI   G PLA PSAN SG+ S T   H+    +  +IPLI+DGG   +GLEST++ V  
Sbjct: 133 KLIAAAGLPLAAPSANLSGKPSPTTAAHVY-EDLNGKIPLILDGGECSVGLESTVIAV-G 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAPRSQV----- 236
           E+ VR+LRPGG+ +E L+R   VE++  V     + +   SPGM   HY+P++ V     
Sbjct: 191 EESVRLLRPGGITVEMLERFCPVEVDDAVCHQLKQGAVAASPGMKYKHYSPKAHVVILDG 250

Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                   L A       AL+  G       +  +   +L+  G  +E A  LF  ++  
Sbjct: 251 TLEQFCTYLSAHKQKNTYALVFDGE------QQELGVPSLTYGGNAQEQAKELFAALRKL 304

Query: 290 DDSGASSIAFSSIPNH-GLGIAINNRLERAAA 320
           D+ GA  + ++  P+  G+G+A+ NRL RAA 
Sbjct: 305 DELGA-GVVYARCPDRSGMGLAVYNRLIRAAG 335


>gi|16080748|ref|NP_391576.1| ribosome maturation factor; RNA binding protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221311656|ref|ZP_03593503.1| hypothetical protein Bsubs1_19976 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315984|ref|ZP_03597789.1| hypothetical protein BsubsN3_19897 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320895|ref|ZP_03602189.1| hypothetical protein BsubsJ_19840 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325179|ref|ZP_03606473.1| hypothetical protein BsubsS_20001 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|732384|sp|P39153|YWLC_BACSU RecName: Full=Probable tRNA threonylcarbamoyladenosine biosynthesis
           protein YwlC; AltName: Full=t(6)A37
           threonylcarbamoyladenosine biosynthesis protein YwlC
 gi|556881|emb|CAA86105.1| Similar to Saccharomyces cerevisiae SUA5 protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2636220|emb|CAB15712.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|1095419|prf||2108403D ipc-29d gene
          Length = 346

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 178/335 (53%), Gaps = 26/335 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  +++N  A++++YE K RP+ NPLI H++D
Sbjct: 16  TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC 121
           IS ++      P     L K FWPG LTL+L    D LS     P  TA L+T   R+P 
Sbjct: 76  ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALS-----PRVTAGLETVAIRMPD 130

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 LI   G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST+
Sbjct: 131 HPLALALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIVDGGPTGIGVESTV 189

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV-- 236
           ++   +  V +LRPGG+  E ++  I  + ++  + D+   P SPGM  +HYAP + +  
Sbjct: 190 LSCADDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAI 248

Query: 237 ------RLRAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                 R++ +    ++   R G +  +    + +A    +  +  +L+  A  L++ ++
Sbjct: 249 CEGSPERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALR 308

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D++    I   S P+ G+G+AI NRL +AA  R
Sbjct: 309 SFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343


>gi|258508168|ref|YP_003170919.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG]
 gi|257148095|emb|CAR87068.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG]
 gi|259649485|dbj|BAI41647.1| translational factor [Lactobacillus rhamnosus GG]
          Length = 340

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D +MV ++
Sbjct: 12  EAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQY 71

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A++ P +  L   FWPGPLT++L++L    +    T  L+TA FR P    T+KLI T G
Sbjct: 72  ATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKLIATAG 130

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ESTI+++       IL
Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTPPA-IL 188

Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           RPG +   E+E L   +     + V +   P++PGM   HYAP +QV
Sbjct: 189 RPGAIGPHELEPLLGPVD-SAAHHVGKNEAPKAPGMKYKHYAPAAQV 234


>gi|227486773|ref|ZP_03917089.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235243|gb|EEI85258.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 344

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/331 (34%), Positives = 171/331 (51%), Gaps = 24/331 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++A++KA  F+ +G  +A PTETVYGL  D  N  A R++++ K RP+ NPLI H+S I
Sbjct: 14  DTDAIKKAANFIKSGQLVAFPTETVYGLGADGINDEACRKIFKAKGRPSDNPLILHISHI 73

Query: 68  SMVKKHASVDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           SM+     V+ ++    KLF  WPGP+TL+     +  I    TA   T   R P     
Sbjct: 74  SMLDNL--VEEITDKHRKLFELWPGPMTLIFK--KSKSIPDAVTAGGDTVAIRFPSDQIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI     P+A PSAN SG+ S TN   +    +   IP+IIDGG S IG+EST++++ 
Sbjct: 130 RALITEADTPIAAPSANISGRPSPTNASDVY-QDMDGIIPVIIDGGESNIGIESTVIDLS 188

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            ++ + ILRPG    E LK  +S + L +  VD +  P+SPG    HYAP++++R+    
Sbjct: 189 GDEPI-ILRPGFYTYEFLKDILSDMRLDDSLVDSSKIPKSPGQKYKHYAPKAKLRVFIGE 247

Query: 243 VNPREALIRF-------GNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYMKIA 289
             P   L            V I   E      N+   ++L     L   +  LF+ ++  
Sbjct: 248 DVPTHLLSEAEKYKSDGKKVGILAFEEDKEKFNSYPYISLGSRKDLSTMSHVLFSSLREM 307

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D  G   I    +    LG +I NR+++AAA
Sbjct: 308 DRLGVDLILAEGVKEKHLGKSIMNRMKKAAA 338


>gi|199597585|ref|ZP_03211014.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001]
 gi|199591608|gb|EDY99685.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001]
          Length = 340

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D +MV ++
Sbjct: 12  EAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAAMVSQY 71

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A++ P +  L   FWPGPLT++L++L    +    T  L+TA FR P    T+KLI T G
Sbjct: 72  ATITPDAAKLMDTFWPGPLTIILNVLPGR-LSMKVTGGLQTAAFRNPDDALTRKLIATAG 130

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ESTI+++       IL
Sbjct: 131 VPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTPPA-IL 188

Query: 193 RPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           RPG +   E+E L   +     + V +   P++PGM   HYAP +QV
Sbjct: 189 RPGAIGPHELEPLLGPVD-SAAHHVGKNEAPKAPGMKYKHYAPAAQV 234


>gi|283796629|ref|ZP_06345782.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1]
 gi|291076052|gb|EFE13416.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1]
          Length = 377

 Score =  155 bits (392), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 118/327 (36%), Positives = 169/327 (51%), Gaps = 35/327 (10%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-SMVKKHASVDP 78
           + GL +A PTETVYGL  ++ + TA RR+YE K RP+ NPLI H++D  ++    A +  
Sbjct: 54  EGGL-VAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAHIADFEALAPLTAEIPE 112

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLIETYGHPLA 136
               LA+ FWPGPLT+V      + + P  +T  L+T   R+P     ++LI   G P+A
Sbjct: 113 AGRKLAEAFWPGPLTMV---FKKSGVVPHGTTGGLETVAVRMPSDPVARELIRLAGVPIA 169

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T  +H+L     K I +I+DGG   IG+ESTIV+V  E+   +LRPG 
Sbjct: 170 APSANTSGRPSPTRAEHVLQDMDGK-IEMIVDGGPVGIGVESTIVDV-TEEIPTLLRPGA 227

Query: 197 LEIETLKRAISVELEYCVDETST--------PQSPGMLKSHYAPRSQV------------ 236
           + +E L+   SV  E  VD   T        P++PGM   HYAP++ +            
Sbjct: 228 VTMEMLR---SVVGETAVDPAITGPMRADIKPKAPGMKYRHYAPKADLTLVEGETDAVVS 284

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEA--AFNLFNYMKIADDSG 293
           R+ A+      A  R G +  +  ++   +  L   G +  EA  A NL+  ++  DD  
Sbjct: 285 RINALAAEKLGAGQRVGIICTEETKDRYPAGILKSIGMRANEATVAHNLYAVLREFDDLE 344

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I   S     LG AI NRL +AA 
Sbjct: 345 VDCIFSESFQADDLGQAIMNRLNKAAG 371


>gi|325971426|ref|YP_004247617.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta sp. Buddy]
 gi|324026664|gb|ADY13423.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta sp. Buddy]
          Length = 437

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 168/331 (50%), Gaps = 25/331 (7%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I SI     +++    L  G  +A PTETVYGL  D+ N  A++ ++  K+RP  +PLI 
Sbjct: 117 IPSIQLPKLIKEQAALLAQGKLVAFPTETVYGLGADALNEEAVKSIFAAKQRPFFDPLIV 176

Query: 63  HVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H++ +  ++     +DP +  L   FWPGPLTLVL       +  + TAN +T   R+P 
Sbjct: 177 HIAKLEQLEGLVVDLDPRARLLMDHFWPGPLTLVLK--KHPSVPAIVTANSQTVAIRMPS 234

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 LI+  G  +A PSANR G  S T   H+    + + I  I+DGG   +G+EST+
Sbjct: 235 NPLALNLIQASGKAIAAPSANRFGYTSPTTATHV-KEQLGERIDAILDGGACTVGIESTV 293

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP-----QSPGMLKSHYAPRS- 234
           +++ C +   ILRPG + IE LK  +    E  V +   P     +SPG+L+SHYAP + 
Sbjct: 294 LSL-CTEIPTILRPGKIGIEELKPLLG---EVIVTKQVGPTDTHLESPGLLESHYAPTTP 349

Query: 235 -----QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                 V L     +    L     VP K        + +S+T   +EAA  L+  ++  
Sbjct: 350 LYLVDDVTLYKDQSDVGVLLFEKQKVPFKG-----PVVYVSETENAEEAASRLYWAIRHL 404

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D      +  S +P  G+G+AINNRL +A+A
Sbjct: 405 DTMHLRCMVGSLLPEVGIGVAINNRLRKASA 435


>gi|325479327|gb|EGC82423.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 344

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 173/340 (50%), Gaps = 42/340 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++KA   L  G  +AIPTETVYGL  +  +  A R+++E K RPA NPLI H+S+I
Sbjct: 14  DQKIIKKAANLLKDGKLVAIPTETVYGLGANGLDDLACRKIFETKNRPADNPLILHISNI 73

Query: 68  SMVKKHASVDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            M+  +  V+ +S    KLF  WPGPLT++     +  I    TA   T   R P     
Sbjct: 74  DML--YNLVEGVSDEARKLFDLWPGPLTMIFK--KSKLIPDTVTAGGDTVAIRFPVDKIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++I     P+A PSAN SG+ S TN        +  +IPLI+DGG SKIG+EST++++ 
Sbjct: 130 REIISEANLPIAAPSANISGRPSPTNAVDCF-FDLNGKIPLIVDGGESKIGIESTVIDL- 187

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238
            E    ILRPG   +E L+  + +V L+   VD+   P+SPG    HYAP++++++    
Sbjct: 188 SEDVPTILRPGFYTLEMLREILPNVRLDDALVDDNVVPKSPGQKYKHYAPKARMQVYVGK 247

Query: 239 ---------------RAIHVNP---REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280
                          + IHV      E + RF         +    ++      L + + 
Sbjct: 248 RASDFIYKKAKSYKNQGIHVGVLVFEEDIDRF---------DEFDRISFGSRNDLNQMSH 298

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            LF+ ++  D  G   I    + ++ LG +I NR++++AA
Sbjct: 299 TLFSSLRQMDKLGVDLILAEGVMDNNLGKSIMNRMKKSAA 338


>gi|206970259|ref|ZP_03231212.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134]
 gi|228924061|ref|ZP_04087337.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229072792|ref|ZP_04205991.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185]
 gi|229082540|ref|ZP_04215003.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2]
 gi|229181573|ref|ZP_04308899.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W]
 gi|229193577|ref|ZP_04320521.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876]
 gi|206734836|gb|EDZ52005.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134]
 gi|228589882|gb|EEK47757.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876]
 gi|228601941|gb|EEK59436.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W]
 gi|228700972|gb|EEL53495.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2]
 gi|228710283|gb|EEL62258.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185]
 gi|228835551|gb|EEM80916.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 346

 Score =  155 bits (392), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|309808063|ref|ZP_07701981.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308168665|gb|EFO70765.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 331

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 170/331 (51%), Gaps = 26/331 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D +M+KK+ +  P     L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDYFWPGPLTLIL-FIKEGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V    
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238

Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290
           I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  D
Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +    +I         +  A  NRL +AA+
Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325


>gi|323704817|ref|ZP_08116394.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535743|gb|EGB25517.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 349

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 176/337 (52%), Gaps = 30/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N + +A   L  G  +A PTETVYG+  +S NP A+ +++  K RP  NPLI H+S+ 
Sbjct: 13  DINLIDEAASILLNGGLVAFPTETVYGIGANSLNPDAVAKIFIAKGRPQDNPLILHISEF 72

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124
             + K+A   P  +L LA+ FWPGPLT++ +    +DI P ++TA + T   R+P     
Sbjct: 73  QDLFKYAKNVPNDALKLARQFWPGPLTMIFE---KSDIVPSINTAGMNTVAIRMPSNKIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI+  G P++ PSAN SG+ S T+  H++ S +   + +IIDGG   +G+EST+V++ 
Sbjct: 130 HTLIKRAGIPVSAPSANLSGKPSPTDASHVI-SDLYGRVDMIIDGGSCDVGVESTVVDMT 188

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETST----PQSPGMLKSHYAPRSQVRLR 239
            E    ILRPGG+  E +   + SVE++  V +  +    P+SPGM   HY+P ++V + 
Sbjct: 189 GEIPT-ILRPGGITKEMIMGVVGSVEVDPIVYKKPSLDVKPKSPGMKYKHYSPDAEVYIV 247

Query: 240 AIHV----------------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
             ++                N ++  I       +   N  + L +    + +  A NLF
Sbjct: 248 KGNIGDVIKKIQELTEFQLNNGKKVGIMATEQTCEKYRNGEV-LVVGNRERPETIAKNLF 306

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D  G   +         +G+AI NRLE+AA 
Sbjct: 307 RCLREFDKKGVDVVYAEGFDYDEIGLAIMNRLEKAAG 343


>gi|312874663|ref|ZP_07734687.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2053A-b]
 gi|311089893|gb|EFQ48313.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2053A-b]
          Length = 331

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 170/331 (51%), Gaps = 26/331 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D +M+KK+ +  P     L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDYFWPGPLTLIL-FIKKGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V    
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238

Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290
           I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  D
Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +    +I         +  A  NRL +AA+
Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325


>gi|194333295|ref|YP_002015155.1| Sua5/YciO/YrdC/YwlC family protein [Prosthecochloris aestuarii DSM
           271]
 gi|194311113|gb|ACF45508.1| Sua5/YciO/YrdC/YwlC family protein [Prosthecochloris aestuarii DSM
           271]
          Length = 316

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/328 (37%), Positives = 168/328 (51%), Gaps = 24/328 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + ITDS   R+A +F++ G  +A PTETVYGL  D  N  A++R++  K RP  NPL
Sbjct: 1   MQTL-ITDSP--REAADFINRGQIVAFPTETVYGLGADITNDDAVQRIFLAKGRPGDNPL 57

Query: 61  ICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV     V+K  AS+   +  L   F+PGPLTLV  L   + I PL TA L T   R 
Sbjct: 58  IVHVYSPKEVEKVAASIPETARKLMDRFFPGPLTLV--LCKQSRISPLVTAGLPTVGVRC 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+  +    HP+A PSAN SG+ S T+ K +    +  +I  I+ G  S IGLES
Sbjct: 116 PRHPVTRAFLRECRHPVAAPSANLSGKPSSTDWKSV-HEDLNGKINCILRGEQSAIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236
           TIV+   E   R+LR G + ++ L RAI   L     ++E + P+SPG+   HYAP +++
Sbjct: 175 TIVDCATEPP-RLLRAGAISLDEL-RAIVPGLLGPAAIEEHAQPKSPGLKYPHYAPSAEI 232

Query: 237 RLRAIHVNPRE-----ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           RL        E     A I     P    E A ++      G   E A  LF + +  D 
Sbjct: 233 RLCGEEYGVCEGGKETAWIGLSPPP----EGAAVTCRCDDAG---EYAHRLFRFFRECDR 285

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
               +I     P  G+G A+ +RL RAA
Sbjct: 286 EHIRTIFCEMPPPEGIGQALRDRLRRAA 313


>gi|310819587|ref|YP_003951945.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392659|gb|ADO70118.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 313

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 164/318 (51%), Gaps = 16/318 (5%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-S 75
           E L +G  IA+PTETVYGLA ++ +  A+RR++ IK RPA +PLI H+     + + A  
Sbjct: 2   EILRSGGVIALPTETVYGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARD 61

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
           + P +  LA  FWPGPLTLVL   S  TD     T    T   RVP       ++   G 
Sbjct: 62  IPPEAWKLAAAFWPGPLTLVLRRTSRATDA---VTGGQDTVALRVPNHPLALAVLSALGG 118

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            LA PSANR G++S T   H+    +  ++ LI+DGG   +G+ESTIV++       ILR
Sbjct: 119 GLAAPSANRFGRVSPTTAGHV-REDLGSDVDLILDGGPCTVGVESTIVDLSSGDPA-ILR 176

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-HVNPREALIRF 252
           PGGL  E L+  +   +   V  TS+ +  G L SHYAPR+ V L  +     R   +R 
Sbjct: 177 PGGLAAEELEHVLGRPVP--VRATSSVRVSGSLASHYAPRAGVTLVEVPEAAARAQALRG 234

Query: 253 GNVPIKNIENAIISL-----NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             + +  +  A ++L               AA +L+  ++ AD +G   +        GL
Sbjct: 235 QGLRVGVLGPASLALPPGVPRFDMPEDPAGAAHDLYLRLREADLAGLDLLLACLPSARGL 294

Query: 308 GIAINNRLERAAAPRNQS 325
           G+A+ +RL RAAAPR   
Sbjct: 295 GLAVRDRLARAAAPRTSG 312


>gi|251771701|gb|EES52276.1| Sua5/YciO/YrdC/YwlC family protein [Leptospirillum
           ferrodiazotrophum]
          Length = 357

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 162/325 (49%), Gaps = 15/325 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L +A   L+AGL +  PTETVYGL  D+ NP A+RR+YEIK RPA +PLI H++ +  
Sbjct: 30  DDLERAALRLEAGLTVVFPTETVYGLGADASNPEAVRRIYEIKGRPADHPLIVHIAGLGD 89

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++  A  + P +  L + FWPGPLTL+L      ++    T    T   RVP       L
Sbjct: 90  LEAWADPIPPEAWRLGERFWPGPLTLILPCRG--EVPKAVTGGRDTIAVRVPAHPVAAAL 147

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +G  +A PSANR G++S T   H+      +E  ++++GG  +IG+ESTIV++  E 
Sbjct: 148 LKAFGRGIAAPSANRFGRLSPTTSGHV-REEFGEEAGMVLEGGPCRIGVESTIVSLVGET 206

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIHVNPR 246
            + ILRPG L    +   +  ++    +    P +PG    HYAP++ +  L   H+  R
Sbjct: 207 PL-ILRPGALTAGQIGEVLGRKIGGASEGQVVPAAPGSHSVHYAPKTPLEILSGTHLPGR 265

Query: 247 E-ALIRFGN-VPIKNIENAIISLNLSKTG------KLKEAAFNLFNYMKIADDSGASSIA 298
               IR G    I  +     S    K        +  E A  L+  +   D SG   + 
Sbjct: 266 VFRTIRAGEKAGILALTQGAGSFGSDKVATILMPSRADEYARELYAALHRLDRSGCDRLF 325

Query: 299 FSSIPNHGLGIAINNRLERAAAPRN 323
               P     IA+ +RL RA A R+
Sbjct: 326 AERPPATEEWIAVRDRLGRACAGRS 350


>gi|228955573|ref|ZP_04117575.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804101|gb|EEM50718.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 342

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 17  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 76

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 77  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 135 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSAV 191

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 192 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 251

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 252 QHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 312 VIFSESFPNEGIGNAIMNRLTKAAG 336


>gi|260437528|ref|ZP_05791344.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM
           2876]
 gi|292810161|gb|EFF69366.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM
           2876]
          Length = 351

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 170/341 (49%), Gaps = 32/341 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I +   ++ A E +  G  +A PTETVYGL  DS +P A  ++Y  K RP+ NPLI H+
Sbjct: 12  EIENDKIIKTAAEIISRGGLVAFPTETVYGLGGDSFDPAAAEKIYAAKGRPSDNPLIVHI 71

Query: 65  SDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
           S+   + K +   P ++  LA  FWPGPLT+++       +    T  L T   R+P   
Sbjct: 72  SEFDDIYKLSDEVPEIAKVLADKFWPGPLTMIVK--KNKSVPVTVTGGLDTVAVRLPSHK 129

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             +KLI+  G  +A PSAN SG+ S T  KH++   +   I +IID G  +IGLESTIV+
Sbjct: 130 VARKLIKESGTFIAAPSANISGRPSPTTAKHVI-DDLNGRIDMIIDDGSIEIGLESTIVD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGMLKSHYAPRSQVR 237
           +  +  V ILRPG +  E L+  +  V L+      V E   P++PGM   HYAP+++  
Sbjct: 189 LTEDVPV-ILRPGYVTFEMLEETVGKVRLDKALMTGVKENVKPKAPGMKYRHYAPKAE-- 245

Query: 238 LRAIHVNPREALIRFGNVPIKNIE---------------NAIIS---LNLSKTGKLKEAA 279
           L  I  +P + + R   + +K  E               + I S   L L  +    E A
Sbjct: 246 LTIIEGSPEKTVARIEEL-VKEAERKGQKAGIMLSEENFDKICSDYKLCLGSSSDENEIA 304

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  ++  DD     I        G+G AI NRL +AA 
Sbjct: 305 RNLFACLRKFDDMDIDVIFSEGFSEEGIGQAIMNRLLKAAG 345


>gi|189499461|ref|YP_001958931.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium phaeobacteroides
           BS1]
 gi|189494902|gb|ACE03450.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium phaeobacteroides
           BS1]
          Length = 318

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/308 (34%), Positives = 162/308 (52%), Gaps = 9/308 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A  +++ G  +A PTETVYGL  D  +  AI ++Y  K RP  NPLI H+  +  +++ A
Sbjct: 12  AATWINRGEIVAFPTETVYGLGADITSDAAIEKIYAAKGRPPDNPLIVHIHSLHQLQEVA 71

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           S  P S   L   F+PGPLT++L+     ++  L TA L T   R+P     ++ +    
Sbjct: 72  SDIPRSAESLIHHFFPGPLTVILN--KNPEVSQLVTAGLPTVGIRLPAHPVAQEFLRRCT 129

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
           HP+A PSAN SG+ S T+ K +    +  +IP ++ G  S IGLESTIV+       R+L
Sbjct: 130 HPVAAPSANISGRPSSTDWKAVY-DDLKGKIPCVLKGPQSTIGLESTIVDCSVHPP-RLL 187

Query: 193 RPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           R G + +E+L+  +  +      ++T +P+SPG+   HY+P +Q+ L      P E    
Sbjct: 188 RSGAISLESLRNVVPQIRAGSSNEKTHSPKSPGLKYPHYSPSAQIILCEEGYPPIERETN 247

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAI 311
              + I      I    + K    +E AF LF++ +  D  G S I     P  G+G+AI
Sbjct: 248 SAWIGISQQPEGIAKTAICKNP--EEYAFRLFSFFRECDREGISVIFCEMPPADGIGLAI 305

Query: 312 NNRLERAA 319
            +RL+RAA
Sbjct: 306 RDRLQRAA 313


>gi|328957993|ref|YP_004375379.1| putative ribosome maturation factor; RNA binding protein
           [Carnobacterium sp. 17-4]
 gi|328674317|gb|AEB30363.1| putative ribosome maturation factor; RNA binding protein
           [Carnobacterium sp. 17-4]
          Length = 329

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 167/325 (51%), Gaps = 21/325 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA + +  G  I+ PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS I  V+++
Sbjct: 3   KAAQKIQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVSTIEEVEQY 62

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
               P ++  L + FWPGPLTL+  +       P  TA L +   R+P    T +LI   
Sbjct: 63  VQEVPEVAKKLMQTFWPGPLTLIFKVKDHV-FAPTVTAGLASVAMRMPDNEVTLQLIRKS 121

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL  PSAN SG+ S T   H+    +  +I  ++D G + +GLEST++++   K   I
Sbjct: 122 GKPLVGPSANTSGKPSPTTADHVY-HDLKGKIAGVLDDGDTGLGLESTVLDITDPKLPTI 180

Query: 192 LRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAP---------RSQVRLRA 240
           LRPG    E L++ I       + +     P++PGM   HY+P          S++  +A
Sbjct: 181 LRPGATTKEALEKVIGTVFVDRHLISNDEVPKAPGMKYKHYSPNEPVVIVVGESEIWQKA 240

Query: 241 IHVNPREALIRFGNVPIKNIENAI-----ISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           I    ++   + G +  +++ N        + +L +   + +A+  L++ ++  + + A+
Sbjct: 241 IKTYQKQGE-KIGLLANQDLLNQFQDTVTATYSLGENKNIHDASRRLYSGLRYFETTDAT 299

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   +    GLG A  NRL++AA 
Sbjct: 300 LILAEAHEQKGLGEAYMNRLQKAAG 324


>gi|329851505|ref|ZP_08266262.1| SUA5 domain protein [Asticcacaulis biprosthecum C19]
 gi|328840351|gb|EGF89923.1| SUA5 domain protein [Asticcacaulis biprosthecum C19]
          Length = 304

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 151/297 (50%), Gaps = 12/297 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I +PTETVYGL   + +P A+ +++E K RP  NPLI H+  +        +D  +L LA
Sbjct: 16  IHLPTETVYGLGARADDPAAVVKVFEAKGRPRFNPLIVHIGSVESAAAIGVMDERALALA 75

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
             FWPGPLTLV+ +  T     L+ A L +   R+P      +++  +G  +  PSANRS
Sbjct: 76  DTFWPGPLTLVVPVRDTVAACDLARAGLDSVALRLPSHPLALEVLRGFGGGVVAPSANRS 135

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+ S T     L  +    + + +DGG  ++G+EST+V++  +   R LR G +    ++
Sbjct: 136 GRPSPTTQADSLEET-GTSVAVSLDGGACQVGVESTVVSLLGD--ARYLRAGAVTRAQIE 192

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
             I        D+T   +SPG L  HYAP + V     H+N     +    +     + A
Sbjct: 193 AVIG---PLAADDTEGHRSPGRLSLHYAPDAPV-----HINMETPPLGAAYLAFGPTDYA 244

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              + LS      EAA NLF+ ++ AD      IA + IP  G+G AIN+R+ RAA 
Sbjct: 245 GPVIQLSANRDPAEAAANLFSGLREADRLNPVCIAIAPIPGDGIGEAINDRIRRAAG 301


>gi|325911759|ref|ZP_08174166.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D]
 gi|325476525|gb|EGC79684.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D]
          Length = 331

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 171/332 (51%), Gaps = 26/332 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V
Sbjct: 4   QIFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTV 63

Query: 65  SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +D +M+KK+ +  P     L   FWPGPLTL+L +   T +    T  L TA FR P   
Sbjct: 64  ADEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDP 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI++
Sbjct: 123 LTNELIQTLTRPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIID 181

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +  ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V   
Sbjct: 182 LSVDQPV-VLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY-- 238

Query: 240 AIHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIA 289
            I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  
Sbjct: 239 -IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADRFSLGVSIDEAAHNLFGALRYF 293

Query: 290 D-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D +    +I         +  A  NRL +AA+
Sbjct: 294 DSNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325


>gi|312871613|ref|ZP_07731705.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           3008A-a]
 gi|311092838|gb|EFQ51190.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           3008A-a]
          Length = 338

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 171/332 (51%), Gaps = 26/332 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V
Sbjct: 11  QIFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTV 70

Query: 65  SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +D +M+KK+ +  P     L   FWPGPLTL+L +   T +    T  L TA FR P   
Sbjct: 71  ADEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDP 129

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI++
Sbjct: 130 LTNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIID 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +  ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V   
Sbjct: 189 LSVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY-- 245

Query: 240 AIHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIA 289
            I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  
Sbjct: 246 -IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADRFSLGVSIDEAAHNLFGALRYF 300

Query: 290 D-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D +    +I         +  A  NRL +AA+
Sbjct: 301 DSNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 332


>gi|229020544|ref|ZP_04177289.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273]
 gi|229026765|ref|ZP_04183097.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272]
 gi|228734488|gb|EEL85150.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272]
 gi|228740764|gb|EEL91017.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273]
          Length = 346

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 169/326 (51%), Gaps = 23/326 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L     +A PTETVYGL  ++ +  AI +++  K RP+ NPLI H+   S + 
Sbjct: 21  LKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFAAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L + FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVREIPPVAEKLMEHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C  +V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSEV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-------- 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP++ + +        
Sbjct: 196 PTILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 -RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
            R +    +E   + G       +++ +A + L+      L   A  L++ ++  D S  
Sbjct: 256 QRIVDEKKKEGF-KVGVLTTEEYQHVYSADVVLSCGMRNDLASVATKLYDVLRTFDASEV 314

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I   S PN G+G AI NRL +AA 
Sbjct: 315 DVIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|163814228|ref|ZP_02205619.1| hypothetical protein COPEUT_00381 [Coprococcus eutactus ATCC 27759]
 gi|158450473|gb|EDP27468.1| hypothetical protein COPEUT_00381 [Coprococcus eutactus ATCC 27759]
          Length = 350

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 170/345 (49%), Gaps = 34/345 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            + D +   +A E L +G  +A PTETVYGL  D+ NP A  ++Y  K RP+ NPLI H+
Sbjct: 9   GVDDEHMYEQAAEILRSGGLVAFPTETVYGLGGDALNPDASHKIYSAKGRPSDNPLIVHI 68

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +D   V + A  V   +  L + FWPGPLT++L+  +   +   +T  L T   R+P   
Sbjct: 69  ADTDSVYELAEYVSDDTKKLMEAFWPGPLTIILNKKAV--VPHTTTGGLDTVAIRMPSHP 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KLI+  G  +A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV+
Sbjct: 127 VAMKLIKDSGVYIAAPSANLSGRPSPTTAHHV-QQDMDGRIDMIIDGGAVGIGIESTIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-------PQSPGMLKSHYAPRSQ 235
           +  ++   ILRPG +  E +K  +    +  +D   T       P++PGM  +HYAP+ +
Sbjct: 186 MTGDRPT-ILRPGYITPEMIKNIVG---DVTIDPAITGMNNALRPKAPGMKYTHYAPKGE 241

Query: 236 V------------RLRAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKE--- 277
           +            R+R++    R    +     +     + N  +  N+   G  K    
Sbjct: 242 LSIVEGERLVAAERIRSLVAEKRAQGYKTAILCDTENVGLYNDGVCENIYDAGSKKNEIT 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  L++ ++  DD GA  I   S     +G AI NRL +AA  R
Sbjct: 302 VSAGLYSLLRTCDDIGAQYIYSESFEEGDMGYAIMNRLIKAAGHR 346


>gi|260663284|ref|ZP_05864175.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum
           28-3-CHN]
 gi|260552136|gb|EEX25188.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum
           28-3-CHN]
          Length = 342

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 171/329 (51%), Gaps = 27/329 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS ++MV+
Sbjct: 11  VKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVSSLAMVE 70

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             A+  P  +  L   FWPG LT++L     T +  + T  L T  FR P C  T  LI 
Sbjct: 71  HFAAEIPAKAKQLMDRFWPGSLTIILRFKPGT-LSKMVTGGLDTVAFRFPDCQPTLDLIS 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+  PSAN SG+ S T   H+    +  +I  IID G +++G+EST++++   + V
Sbjct: 130 QAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDMSTSQPV 188

Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPG +  + ++  I S+++  + V +   P++PGM   HYAP +QV +    V+P +
Sbjct: 189 -ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYI----VDPAD 243

Query: 248 ALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
                  V  ++ E                ++ +   S    ++EA+ +LF  ++  D+ 
Sbjct: 244 DWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFDNQ 303

Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320
                 F       GLG A  NRL ++A 
Sbjct: 304 EEIHQIFCQGFEPTGLGAAYMNRLNKSAG 332


>gi|171696344|ref|XP_001913096.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948414|emb|CAP60578.1| unnamed protein product [Podospora anserina S mat+]
          Length = 413

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 133/228 (58%), Gaps = 11/228 (4%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
           P+A PTETVYGL  D+ + TA++ +Y  K RP+ NPLI HVSD+SM+   +++  +   L
Sbjct: 68  PVAFPTETVYGLGADATSSTAVKGIYTAKGRPSDNPLIVHVSDLSMLSTLSTIPEIYHEL 127

Query: 84  AKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141
              FWPGPLT++L + ++   + P  TA L T   R+P     + LI+  G PLA PSAN
Sbjct: 128 ISKFWPGPLTILLPVPTSGQLLAPEVTAGLTTFGARMPDSPLARALIQLVGKPLAAPSAN 187

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            S + S T   H+L   +  +I LI+DGG   +G+EST+V+  C   V +LRPGG+ IE 
Sbjct: 188 ASTRPSPTKAVHVL-EDLEGKIELILDGGDCAVGVESTVVDGLCNPPV-VLRPGGVGIEE 245

Query: 202 LKRAISVEL-------EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           +++    E           V E   P++PGM   HY+PR++V L   H
Sbjct: 246 IRQVKGWEGVVKGYKDRSEVGEGHKPRAPGMKYKHYSPRARVVLFEGH 293


>gi|312871989|ref|ZP_07732071.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092566|gb|EFQ50928.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2062A-h1]
          Length = 331

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 171/331 (51%), Gaps = 26/331 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D +M+KK+ +  P     L   FWPGPLTL+L +   T +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLTRPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V    
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238

Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290
           I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  D
Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +    +I         +  A  NRL +AA+
Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325


>gi|317121006|ref|YP_004101009.1| translation factor SUA5 [Thermaerobacter marianensis DSM 12885]
 gi|315590986|gb|ADU50282.1| translation factor SUA5 [Thermaerobacter marianensis DSM 12885]
          Length = 386

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 172/354 (48%), Gaps = 45/354 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+ A+R A   L  G  +A PTETVYGL  D+ N  A+ R++  K RPA NPLI HV+  
Sbjct: 21  DAAAIRHAGAVLRRGGLVAFPTETVYGLGADALNAQAVVRIFAAKGRPADNPLIVHVTGP 80

Query: 68  SMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            M      A+    +  L   FWPGPLTLVL   +   +     A L T   R P     
Sbjct: 81  EMAGPAVVAAWPDAARRLVDRFWPGPLTLVLP--AGPAVPAAVRAGLPTVAVRCPAHPVA 138

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G P+A PSANRSG+ S T    +  + +   + +++D G   +G+EST+V+V 
Sbjct: 139 QALIAAAGTPVAAPSANRSGRPSPTRAGDVW-ADLGPHLDVLLDAGPVPVGVESTVVDVT 197

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRL---- 238
                R+LRPGGL +E L+RA+ V L     ++  S   +PGM   HYAP + V L    
Sbjct: 198 TWPP-RLLRPGGLPVEDLERALGVALAPPPRLEAASAAPAPGMKYRHYAPEAPVMLVDEP 256

Query: 239 --------RAIHVNPREALI-----------RFG---NVPIKNIENA----------IIS 266
                   R +    R AL+           R G     P    E A          +++
Sbjct: 257 AAGVEPVRRWLAAGQRVALVGCREDLEALLDRAGLAAAWPDPWDERAGAGGADDPSPVVA 316

Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L+L    +  E A  LF  ++ AD +GA+ I   ++P  GLG A+ NRL +AAA
Sbjct: 317 LDLGPRARPDEQARRLFRALRAADAAGATRILALAVPEVGLGRAVMNRLRKAAA 370


>gi|329921099|ref|ZP_08277622.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G]
 gi|328935006|gb|EGG31495.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G]
          Length = 331

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 170/331 (51%), Gaps = 26/331 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D +M+KK+ +  P     L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V    
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238

Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290
           I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  D
Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +    +I         +  A  NRL +AA+
Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325


>gi|251779596|ref|ZP_04822516.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083911|gb|EES49801.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 349

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 176/334 (52%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + +  G  +A PTETVYGL  D+ N  A+++++  K RP  NPLI HV+  
Sbjct: 14  DEEKIKEAAKVIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           ++      +  ++  L   +WPGPLTL+L   S   I  +++A+L T   R+P      K
Sbjct: 74  NIQSLVEDIPDIAQKLIDKYWPGPLTLILKKKSI--IPNITSADLDTIGIRMPNNEIALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE     +A PSAN SG+ S T+V+  +   +  ++  I+ G  S IGLESTI++    
Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-EDLSGKVDCIVGGDKSNIGLESTILDCTVN 190

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRL--- 238
             + +LRPGG+ +E LK   + +E++  + + ST    P++PGM   HYAP+++V++   
Sbjct: 191 PPL-VLRPGGITLEMLKEIDNRIEIDGAIMKKSTDDLKPKAPGMKYRHYAPKAKVKIISG 249

Query: 239 -RAIHVNPREALIRF-----GNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYM 286
            R   +   + ++ +       V I  IE      N  I + L     L   A NLF  +
Sbjct: 250 ERKKTIEKMKEMVDYYIDNNKKVCILTIEENEKEYNKGIKVVLGSRKNLLMVAQNLFESL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   +    G+GIAI NRL +AA 
Sbjct: 310 RKCDDLGADIILAEAYEEKGVGIAIMNRLNKAAG 343


>gi|309803187|ref|ZP_07697284.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           11V1-d]
 gi|309805675|ref|ZP_07699716.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           09V1-c]
 gi|309806328|ref|ZP_07700341.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           03V1-b]
 gi|309809899|ref|ZP_07703747.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|308164695|gb|EFO66945.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           11V1-d]
 gi|308165035|gb|EFO67277.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308167312|gb|EFO69478.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308169687|gb|EFO71732.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN
           2503V10-D]
          Length = 331

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 170/331 (51%), Gaps = 26/331 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D +M+KK+ +  P     L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V    
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238

Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290
           I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  D
Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +    +I         +  A  NRL +AA+
Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325


>gi|302392964|ref|YP_003828784.1| translation factor SUA5 [Acetohalobium arabaticum DSM 5501]
 gi|302205041|gb|ADL13719.1| translation factor SUA5 [Acetohalobium arabaticum DSM 5501]
          Length = 351

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 174/346 (50%), Gaps = 35/346 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ ++ D NA+ +    L  G  +A PTETVYGL  ++ +  A+ +++  K RPA NPLI
Sbjct: 8   RLFNLDDRNAISECSSILTDGGLVAFPTETVYGLGANALDAEAVNKIFTAKGRPADNPLI 67

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119
            H++ +S + K     P  +  L+  FWPGPLTLV   L   +I P ++T  L T   R+
Sbjct: 68  VHIASLSQLDKLVLKVPNQVKLLSDRFWPGPLTLV---LKKKEIVPDITTGGLDTIAVRL 124

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+     P+A PSAN SG+ S T  +H++ + +   I  IIDGG + +G+ES
Sbjct: 125 PDHKVALDLLNRCQLPVAAPSANLSGRPSPTLAQHVV-TDLGGRIEAIIDGGQTGVGVES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKR---------AISVELEYCVDETSTPQSPGMLKSH 229
           T++++  E +  +LRPGG+  + L           A+  ELE    E  +  +PGM   H
Sbjct: 184 TVISL-VEDRPTLLRPGGITYQELTEVLGEVDIDSAVKAELE---SENKSALAPGMKYKH 239

Query: 230 YAPRSQVRL------RAIHVNPR---EALIRFGNVPIKNIE---NAIISLNLSKTG---K 274
           Y+P + V L      R  H   +   E L     V I   E   N   +  +   G   K
Sbjct: 240 YSPEADVILVEGEAERIAHKITKLADEYLAEGYQVGIMATEENSNFYTAGQVQVMGSRDK 299

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L   + NLF  ++  DDSG   I    + N GLG+AI NRL +AA 
Sbjct: 300 LSVISANLFRLLRSFDDSGVDIILIEGVSNQGLGLAIMNRLRKAAG 345


>gi|228911164|ref|ZP_04074970.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL
           200]
 gi|228848527|gb|EEM93375.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL
           200]
          Length = 346

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 168/325 (51%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISERVTAGLNTVGVRMPDHPVALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSPV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G       +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QQLVDGKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S  N G+G AI NRL +AA 
Sbjct: 316 VIFSESFSNEGIGNAIMNRLTKAAG 340


>gi|295697767|ref|YP_003591005.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912]
 gi|295413369|gb|ADG07861.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912]
          Length = 359

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 167/335 (49%), Gaps = 29/335 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +A +FL  G  +A PTETVYGL  ++ +P A+ ++Y  K RP  NPLI H+++   V
Sbjct: 23  AILEAADFLRRGEAVAFPTETVYGLGANALDPAAVDKIYFAKGRPGDNPLIVHIAERRQV 82

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
              A  + P +  L + FWPGPLT++L   +   +   +T  L T   R+P       ++
Sbjct: 83  DDLAEEIFPAAARLMEAFWPGPLTVILP--AADRVPRRTTGGLDTVAIRMPAHPVAAAIL 140

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A PSANRSG+ S T  K +    +   IPL++DGG + IG+ESTI+     + 
Sbjct: 141 RVAGIPVAAPSANRSGRPSPTTAKDVW-EDLAGRIPLLVDGGPAGIGVESTIIGWPQGRP 199

Query: 189 VRILRPGGLEIETLKRAIS--VELEYCVDET-STPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           V ILRPGG+  E L+  +   VEL+     +   P +PGM   HYAP+ Q+ L    ++ 
Sbjct: 200 V-ILRPGGISPEELQDVLGEPVELDDSWKASVDRPLAPGMKYRHYAPKGQLYLLRGDLDA 258

Query: 246 REALI------------RFGNVPIKNIEN------AIISLNLSKTGKLKEAAFNLFNYMK 287
             A I            R G +     +       A+++    +   L   A  L++ ++
Sbjct: 259 ARAEIVRRATADHAAGRRVGVLTTAEGQGVYPAFCAVVACGTRR--DLATVAAGLYSALR 316

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D  G   +     P  G+G A+ NRL +AA  R
Sbjct: 317 SFDHLGCEVMYAEPFPPEGIGWAVLNRLIKAAGHR 351


>gi|291486279|dbj|BAI87354.1| hypothetical protein BSNT_05644 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 346

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 178/333 (53%), Gaps = 22/333 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  +++N  A++++YE K RP+ NPLI H++D
Sbjct: 16  TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS ++      P     L K FWPG LTL+L       + P  TA L T   R+P     
Sbjct: 76  ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPGA-LSPRVTAGLDTVAIRMPDHPLA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST+++  
Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV------ 236
            +  V +LRPGG+  E ++  I  + ++  + D+   P SPGM  +HYAP + +      
Sbjct: 194 DDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGS 252

Query: 237 --RLRAIHVNPREALIRFGNVPIKNIENA-IISLNLSKT----GKLKEAAFNLFNYMKIA 289
             R++ +    ++   R G +  +  ENA + S +  K+     +L+  A  L++ ++  
Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTE--ENAGVYSADYVKSCGRRAQLETVAAGLYDALRSF 310

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D++    I   S P+ G+G+AI NRL +AA  R
Sbjct: 311 DENKVDLIISESFPDTGVGLAIMNRLMKAAGGR 343


>gi|331002522|ref|ZP_08326040.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410338|gb|EGG89772.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 366

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 169/339 (49%), Gaps = 36/339 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  +A PTETVYGL  ++    A +++Y  K RP+ NPLI H+S    V 
Sbjct: 25  IKEAADIIRSGGLVAFPTETVYGLGANALMSEAAKKIYAAKGRPSDNPLIVHISKTEDVN 84

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             A   P +   LA+ FWPGP+T+VL   S   I   ++  L T   R+P     + LIE
Sbjct: 85  NIAREIPEIFYKLAECFWPGPMTVVLKKRSI--IPDDTSGGLDTVAVRLPDNNIARALIE 142

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV++  +   
Sbjct: 143 VSKVPIAAPSANTSGRPSPTRASHVF-DDMDGRIDMIIDGGTVGIGVESTIVDLTGDIPT 201

Query: 190 RILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP------------ 232
            +LRPG +  E L+       I   +E+ +     P++PGM   HYAP            
Sbjct: 202 -LLRPGAVTFEMLREVCTEVDIDPAIEHLLASGEAPKAPGMKYKHYAPKADMKMLKGNEA 260

Query: 233 -----------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
                      +S+++   + V+   A++    +   N +  I  L+L     +K  A N
Sbjct: 261 AVLDYLKKEISKSEIKTAILTVDEHRAVLE--KIIEDNKKENIKLLSLGSLKDMKTVAHN 318

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           LF+ ++  D+ G S+I   S    G+G AI NRL++A+ 
Sbjct: 319 LFDVLRKCDELGVSTILSESFDESGIGRAIMNRLKKASG 357


>gi|303234993|ref|ZP_07321617.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4]
 gi|302493848|gb|EFL53630.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4]
          Length = 342

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 167/329 (50%), Gaps = 27/329 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL KA E +  G  +A PTETVYGL  +  +  A ++++++K+R   NPLI HV++  MV
Sbjct: 16  ALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDMV 75

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           K  +S +      L    WPGPLT++     +  ++ + +    T   R P     + LI
Sbjct: 76  KNLSSEITEDQKKLMDNLWPGPLTIIFK--KSDKVNDVVSCGGDTVAIRNPSDEIARFLI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+A PSAN+SG+ S TN + +  S +  EI +I+DGG   IG+EST+V++  EK 
Sbjct: 134 DKSGCPIAAPSANKSGRPSPTNAQDVY-SDMQDEIEMILDGGSCNIGIESTVVDL-TEKP 191

Query: 189 VRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRS----------- 234
             ILRPG    E L+  +  E+ Y    +D  + P+SPG    HYAP++           
Sbjct: 192 YTILRPGFYTKEDLEEYLD-EVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250

Query: 235 -QVRLRAIHVNPREALIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
            Q  + ++ +N  E          KN+  EN  I   +SK       A N+F Y++  D 
Sbjct: 251 IQNYVDSLGINTDEIGFILTEETAKNVNFENVKI---ISKRNDYLNFAHNIFTYLRELDK 307

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                +    +    +GI+I NRL+++ A
Sbjct: 308 FNYKLLICEGVNEQKMGISIMNRLKKSCA 336


>gi|227513057|ref|ZP_03943106.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri ATCC
           11577]
 gi|227524272|ref|ZP_03954321.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus hilgardii ATCC
           8290]
 gi|227083632|gb|EEI18944.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri ATCC
           11577]
 gi|227088503|gb|EEI23815.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus hilgardii ATCC
           8290]
          Length = 340

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 171/336 (50%), Gaps = 28/336 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + + +A  F+  G  ++ PTETVYGL  D+ N TA++++Y  K RP+ NPLI  VS
Sbjct: 5   ILKKDQIEQAANFIKKGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            + MVKK+   ++  +  L K FWPG LT++  L     +    T  L TA FR P    
Sbjct: 65  SVEMVKKYVDHINDDAQKLIKAFWPGSLTMIFKLKPNV-LSKAVTGGLNTAAFRFPQNQL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G + +G+EST++++
Sbjct: 124 TLDLITKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAIVDDGPTTVGVESTVLDM 182

Query: 184 QCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
              K   ILRPG +   +IE +     ++  + V    TP++PGM   HYAP +QV +  
Sbjct: 183 SV-KTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQVYI-- 239

Query: 241 IHVNPREALIRFGN--------VPIKNIENAIISLNLSKTGKL-------KEAAFNLFNY 285
             V+P ++ +            V +   +N I S++     ++       + A+ +LF  
Sbjct: 240 --VDPEDSWLDVAKWIENHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLFAD 297

Query: 286 MKIADDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320
           ++  D+     I F+  +   G+  A  NRL ++A 
Sbjct: 298 LREFDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAG 333


>gi|289523378|ref|ZP_06440232.1| Sua5/YciO/YrdC/YwlC family protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503070|gb|EFD24234.1| Sua5/YciO/YrdC/YwlC family protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 341

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 166/321 (51%), Gaps = 22/321 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A E +  G  +A PTETVYGL  ++ + +A+R ++  K RP  NPLI HV+++   +
Sbjct: 19  IKIAAEAIVKGKLVAFPTETVYGLGANALDESAVRGIFSAKGRPCDNPLIVHVANVESAE 78

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FTKKLIE 129
           K A     +L L + FWPGPLTLV   +   DI P +T   L+T   R+P       LIE
Sbjct: 79  KIAHTTSKALRLMERFWPGPLTLV---MKAKDIVPKATRGGLETVAVRMPAHPVALALIE 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T+   +     C  + +I+D G + +G+EST+++V  EK V
Sbjct: 136 KSGVPIAAPSANTSGRPSPTDAGVVYDDLGCC-VDVILDTGPTDVGVESTVIDVTQEKVV 194

Query: 190 RILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHV 243
            +LRPGGL +E ++       +  EL     E    +SPG    HYAPR +V L R    
Sbjct: 195 -LLRPGGLPVEAIEEFGEEVMLPDELGAGRAEDVKRKSPGTRYRHYAPRCRVVLWREGDD 253

Query: 244 NPREALIRFGNVPIK----NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
            P E     G + IK    +I   +I  +      L+  A  LF  M+  +  G   I  
Sbjct: 254 WPLERDEAVGYMGIKRPPLDISEKVILFD-----SLEHYARGLFMAMRYLEKKGVKVIVA 308

Query: 300 SSIPNHGLGIAINNRLERAAA 320
                 GLG+AI +RL RA++
Sbjct: 309 DYPVKEGLGLAIRDRLYRASS 329


>gi|86135055|ref|ZP_01053637.1| Putative translation factor (SUA5) [Polaribacter sp. MED152]
 gi|85821918|gb|EAQ43065.1| Putative translation factor (SUA5) [Polaribacter sp. MED152]
          Length = 318

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 169/325 (52%), Gaps = 17/325 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  S  ++KA   L+    +AIPTETVYGLA +  +  AI+ ++E K+RP  NPLI H
Sbjct: 1   MSII-SKDIQKAISILENEELVAIPTETVYGLAGNIFSEKAIKSIFETKQRPLFNPLIVH 59

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           VS I  + K  +  P     LA+ FWPG +TLVL      +I  L TA   T   R+P  
Sbjct: 60  VSGIDQLDKIVAEIPAKAKLLAEKFWPGSMTLVLK--KNPNIPDLITAGKSTVAVRIPNH 117

Query: 123 FTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            T  +L+     PLA PSAN    IS T  +H+ +    + + +++DGG  K G+ESTI+
Sbjct: 118 KTTLELLSKLPFPLAAPSANPFNNISPTKPEHV-ARYFKESLEMVLDGGTCKNGIESTII 176

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA- 240
                + V I R G L +E ++  +   +    ++   P +PGML+ HYAP+++  L   
Sbjct: 177 GFNNNEPV-IYRLGALALEEIENVVG-PVSVMNEKEKNPDAPGMLQKHYAPKTKTILTTD 234

Query: 241 ------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
                  +   +  ++ F      N  +A   + LS +  L+EAA NL++ M   D    
Sbjct: 235 VKSEIEKYKTSKIGVLSFSTSFKNNAVDA--EIRLSTSNNLQEAASNLYDSMHQLDHLNL 292

Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319
             I    +P  GLG ++N+RL+RAA
Sbjct: 293 DIIIVEKLPEFGLGKSMNDRLKRAA 317


>gi|295112222|emb|CBL28972.1| Sua5/YciO/YrdC/YwlC family protein [Synergistetes bacterium SGP1]
          Length = 327

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 163/315 (51%), Gaps = 16/315 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A E L +G  +A PTETVYGL  ++ NP A++ +Y  K RP+ NPLI H+S +   +
Sbjct: 18  LARAAEVLRSGGLVAFPTETVYGLGANALNPEAVKGIYRAKGRPSDNPLILHLSRVEQAE 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC-GFTKKLIE 129
               VD  +  L + FWPGPLTLV   L   D+ P+ +   L TA  R+P       LI+
Sbjct: 78  PLVCVDERARRLMRAFWPGPLTLV---LRARDVVPMEARGGLSTAALRMPSHPVASALID 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN SG+ S T+ + +    +   I +I+DGG   +G+EST+++V  E  +
Sbjct: 135 AVGFPLAAPSANVSGRPSPTDAETVW-RDLRGRIEMILDGGPVSVGIESTVIDVSEELPL 193

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LRPGG+  E ++  +   L    D  S+ +SPG    HYAP   + +R  H      +
Sbjct: 194 -LLRPGGMPAEEIEAFLGEPLRRP-DGRSSRRSPGTRYRHYAP--TIPVRVWHPEAPFEM 249

Query: 250 IRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDSGASSIAFSSIP 303
                + ++      +++  ++ G+      ++  A  LF+  +  +  G   I     P
Sbjct: 250 AEMVGMELERWGFMGLAVPPARFGRVLRFESVENYARGLFSGFRALEAEGLLGIVAEWPP 309

Query: 304 NHGLGIAINNRLERA 318
             G+G+ + +R+ RA
Sbjct: 310 AAGVGLGLRDRIRRA 324


>gi|194016307|ref|ZP_03054921.1| YwlC [Bacillus pumilus ATCC 7061]
 gi|194011780|gb|EDW21348.1| YwlC [Bacillus pumilus ATCC 7061]
          Length = 350

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 170/330 (51%), Gaps = 20/330 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L     +A PTETVYGL  +++   A+ ++YE K RP+ NPLI H+++I  + 
Sbjct: 22  IEQAALLLQQNEVVAFPTETVYGLGANAKETEAVMKIYEAKGRPSDNPLIVHIAEIEQLH 81

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           + A ++      L   FWPG LT+VL     T +    TA L T   R+P      +LI 
Sbjct: 82  EFAQIESEKAKALMDAFWPGALTIVLPCKPGT-LSKQVTAGLSTVGVRMPDHPIALELIR 140

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+A PSANRSG+ S T   H+ +S +   I  I+DGG + IG+EST+V+   E  V
Sbjct: 141 TAGLPIAAPSANRSGKPSPTQADHV-ASDLDGRIAGIVDGGSTGIGVESTVVSCVDEIPV 199

Query: 190 RILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVRL--------- 238
            ILRPGG+  E L+  + +V ++     +   P SPGM  +HYAP +++ L         
Sbjct: 200 -ILRPGGITKEALEEVVGTVSIDPGLTKKDEAPVSPGMKYTHYAPEAKMYLFFGSDEEMQ 258

Query: 239 RAIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           R I     E   + G +     K++  A +  +     K +  A NL+  ++  D++   
Sbjct: 259 RHIQTYQAEGF-KVGVLTTEEKKSLFAADVVFSCGWREKPETIAANLYRVLRQFDETDVD 317

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            I   +    G+G AI NRL++AA  R  S
Sbjct: 318 VIISEAFSEQGVGSAIMNRLQKAAGGRTLS 347


>gi|188589112|ref|YP_001919885.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499393|gb|ACD52529.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 349

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 176/334 (52%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + +  G  +A PTETVYGL  D+ N  A+++++  K RP  NPLI HV+  
Sbjct: 14  DEEKIKEAAKVIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           ++      +  ++  L   +WPGPLTL+L   S   I  +++A+L T   R+P      K
Sbjct: 74  NIQSLVEDIPDIAQKLIDKYWPGPLTLILKKKSI--IPNITSADLDTIGIRMPNNEIALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE     +A PSAN SG+ S T+V+  +   +  ++  I+ G  S IGLESTI++    
Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-EDLSGKVDCIVGGDKSNIGLESTILDCTVN 190

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRL--- 238
             + +LRPGG+ +E LK   + +E++  + + ST    P++PGM   HYAP+++V++   
Sbjct: 191 PPL-VLRPGGITLEMLKDIDNRIEIDGAIMKKSTDDLKPKAPGMKYRHYAPKAKVKIISG 249

Query: 239 -RAIHVNPREALIRF-----GNVPIKNIE------NAIISLNLSKTGKLKEAAFNLFNYM 286
            R   +   + ++ +       V I  IE      N  I + L     L   A NLF  +
Sbjct: 250 ERKKTIEKMKEMVDYYIDNNKKVCILTIEENEKEYNKGIKVVLGSRENLLMVAQNLFESL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   +    G+GIAI NRL +AA 
Sbjct: 310 RKCDDLGADIILAEAYEEKGVGIAIMNRLNKAAG 343


>gi|313113833|ref|ZP_07799400.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623860|gb|EFQ07248.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 358

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 173/341 (50%), Gaps = 28/341 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  +D  ++ KA   L  G  +A+PTETVYG+A D+RN  A+++++  K RP  NPLI
Sbjct: 22  EILPASDEKSIEKAAALLQNGELVALPTETVYGIAADARNGEAVKKIFVAKGRPQDNPLI 81

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV+   M+    S  P     L   F PGPLT+++      ++     A L T   R+P
Sbjct: 82  VHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVAAECCAGLDTVGIRMP 139

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + +IE  G   A PSAN SG+ S TN + +  + +   +PLI+DGG   +G+EST
Sbjct: 140 SHPVARAVIEKSGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDVGVEST 198

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPR 233
           +V+V  EK   + RPG + +E L+RA+  E+E        + E +  +SPGM   HYAP+
Sbjct: 199 VVSVVGEKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPK 257

Query: 234 SQVRLR-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
           + V L              H     + + F     K     +  +   + G   + A ++
Sbjct: 258 ADVTLLDGTFEQFKAYVDAHAEQNPSCLCFTGEAEK---LGVPCVEYGREGDGADQAKHI 314

Query: 283 FNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322
           F  ++  D+ G  ++ ++  P   GL +A+ NRL RAAA R
Sbjct: 315 FRCLRALDEQG-DAVVYARCPQKDGLSMAVYNRLIRAAAFR 354


>gi|116491553|ref|YP_811097.1| translation factor SUA5 [Oenococcus oeni PSU-1]
 gi|290891158|ref|ZP_06554220.1| hypothetical protein AWRIB429_1610 [Oenococcus oeni AWRIB429]
 gi|116092278|gb|ABJ57432.1| translation factor SUA5 [Oenococcus oeni PSU-1]
 gi|290479122|gb|EFD87784.1| hypothetical protein AWRIB429_1610 [Oenococcus oeni AWRIB429]
          Length = 337

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 179/343 (52%), Gaps = 35/343 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++  T   A+ +A   + +G  +A PTETVYG+  D+    A+ +++  KKRP  NPL
Sbjct: 1   MTLVLKTSEKAIAEAANIMASGGVVAFPTETVYGIGADATKRDAVEKVFAAKKRPHDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV 119
           I  VS+  M  + A +D  +  L + FWPG LT++L L+   DI P + TA L TA FR 
Sbjct: 61  IVTVSNAEMASRFAKLDWRAEKLIENFWPGSLTMILPLID-QDILPDNVTAGLLTAAFRN 119

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+ LI    +P+  PSAN S + S T  +H+L   +   I  +ID G ++IG+ES
Sbjct: 120 PKNDVTRHLITLLNNPIVGPSANLSTKPSPTTAEHVL-HDMDGRIDAVIDDGPTEIGVES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHY 230
           TIV++   K+  ILRPG +   T  +  SV  E  +D T          P++PGM   HY
Sbjct: 179 TIVDLSV-KQATILRPGAV---TADQVSSVLGEKVIDPTGPISLAANIAPKAPGMKYRHY 234

Query: 231 APR------SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK--TGKLKEAAFN- 281
           AP       +Q  L+ +    ++      N  +  +E+++  L L +  +  L E A + 
Sbjct: 235 APSKAVVIFNQTDLKDLKQQLKK------NDAVVALEDSLNQLKLDRRHSWSLGETADSA 288

Query: 282 ---LFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320
              LF+ ++  DD     +I   S+P+ G+G A  NRLE++A 
Sbjct: 289 TEELFSALRFFDDQKDIQTIYVESLPSEGIGEAYMNRLEKSAG 331


>gi|218233574|ref|YP_002370102.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264]
 gi|218161531|gb|ACK61523.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264]
          Length = 346

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 170/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              + + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVTEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G +  +  +   +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQYVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|319951527|ref|ZP_08025332.1| Sua5/YciO/YrdC/YwlC family protein [Dietzia cinnamea P4]
 gi|319434824|gb|EFV90139.1| Sua5/YciO/YrdC/YwlC family protein [Dietzia cinnamea P4]
          Length = 339

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 168/314 (53%), Gaps = 26/314 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ N  A+R+++E+K+RP  +PLI H++D   +    +  P     L
Sbjct: 2   VAFPTETVYGLGADAENAEAVRQVFEVKQRPVTHPLIVHLADPGQLGDWVTEIPGPARVL 61

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           A+ FWPGPLTLVL    +  I P+ T    T   RVP     ++L+  +G  +A PSANR
Sbjct: 62  AECFWPGPLTLVLP--RSPRIPPVVTGGCDTVAVRVPHHPVARQLLTAFGGAIAAPSANR 119

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
            G +S T+  H+ +  +   + LI+DG    +G+ESTI++V  ++ + +LRPG + ++ L
Sbjct: 120 FGAVSCTSADHV-ADELGPAVDLILDGRPCPVGIESTIIDVTGDEPI-LLRPGAVGVDDL 177

Query: 203 KRAISVELEYCVDETSTP--QSPGMLKSHYAPRSQVRL-----------RAIHVNPREAL 249
            RA+   +      TS+P  ++PG   SHY+PR++V L           R      R  +
Sbjct: 178 ARALGRPIHTA---TSSPGRRAPGQHPSHYSPRARVILVEESEVVDEARRQQSHGRRIGV 234

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH-GLG 308
           +R        I    + + +     L + A +L+  ++  D      +  +S+P   G+G
Sbjct: 235 LRPPATTASTITGNALVIEVPTA--LGDYARDLYRLLREFDRHDCE-VVIASLPTRAGVG 291

Query: 309 IAINNRLERAAAPR 322
           +AI +RL RA+APR
Sbjct: 292 LAIADRLTRASAPR 305


>gi|118586288|ref|ZP_01543743.1| translational factor, SUA5 family [Oenococcus oeni ATCC BAA-1163]
 gi|118433283|gb|EAV39994.1| translational factor, SUA5 family [Oenococcus oeni ATCC BAA-1163]
          Length = 337

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 179/343 (52%), Gaps = 35/343 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++  T   A+ +A   + +G  +A PTETVYG+  D+    A+ +++  KKRP  NPL
Sbjct: 1   MTLVLKTSEKAIAEAANIMASGGVVAFPTETVYGIGADATKRDAVEKVFAAKKRPHDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV 119
           I  VS+  M  + A +D  +  L + FWPG LT++L L+   DI P + TA L TA FR 
Sbjct: 61  IVTVSNAEMAARFAKLDWRAEKLIENFWPGSLTMILPLID-QDILPDNVTAGLLTAAFRN 119

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+ LI    +P+  PSAN S + S T  +H+L   +   I  +ID G ++IG+ES
Sbjct: 120 PKNDVTRHLITLLNNPIVGPSANLSTKPSPTTAEHVL-HDMDGRIDAVIDDGPTEIGVES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHY 230
           TIV++   K+  ILRPG +   T  +  SV  E  +D T          P++PGM   HY
Sbjct: 179 TIVDLSV-KQATILRPGAV---TADQVSSVLGEKVIDPTGPISLAANIAPKAPGMKYRHY 234

Query: 231 APR------SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK--TGKLKEAAFN- 281
           AP       +Q  L+ +    ++      N  +  +E+++  L L +  +  L E A + 
Sbjct: 235 APSKAVVIFNQTDLKDLKQQLKK------NDAVVALEDSLNQLKLDRRHSWSLGETADSA 288

Query: 282 ---LFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320
              LF+ ++  DD     +I   S+P+ G+G A  NRLE++A 
Sbjct: 289 TEELFSALRFFDDQKDIQTIYVESLPSEGIGEAYMNRLEKSAG 331


>gi|30023356|ref|NP_834987.1| SUA5 protein [Bacillus cereus ATCC 14579]
 gi|229112739|ref|ZP_04242272.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15]
 gi|229130575|ref|ZP_04259531.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4]
 gi|229147866|ref|ZP_04276207.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24]
 gi|296505750|ref|YP_003667450.1| integral membrane protein [Bacillus thuringiensis BMB171]
 gi|29898917|gb|AAP12188.1| SUA5 protein [Bacillus cereus ATCC 14579]
 gi|228635516|gb|EEK92005.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24]
 gi|228652914|gb|EEL08796.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4]
 gi|228670720|gb|EEL26031.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15]
 gi|296326802|gb|ADH09730.1| integral membrane protein [Bacillus thuringiensis BMB171]
          Length = 346

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|229050996|ref|ZP_04194545.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676]
 gi|228722373|gb|EEL73769.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676]
          Length = 346

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|302191109|ref|ZP_07267363.1| hypothetical protein LineA_03797 [Lactobacillus iners AB-1]
 gi|312873862|ref|ZP_07733905.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2052A-d]
 gi|325913035|ref|ZP_08175408.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B]
 gi|311090644|gb|EFQ49045.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2052A-d]
 gi|325477715|gb|EGC80854.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B]
          Length = 331

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 169/331 (51%), Gaps = 26/331 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D +M+KK+ +  P     L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIHTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V    
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 238

Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290
           I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  D
Sbjct: 239 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 294

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +    +I         +  A  NRL +AA+
Sbjct: 295 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 325


>gi|226228996|ref|YP_002763102.1| hypothetical protein GAU_3590 [Gemmatimonas aurantiaca T-27]
 gi|226092187|dbj|BAH40632.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 363

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 137/259 (52%), Gaps = 30/259 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + L  A + L AG  +A PTETVYGL  ++ +P A+ R+Y  K RPA NP+I HV+  
Sbjct: 12  DPDVLADAAQILRAGGLVAFPTETVYGLGANALDPDAVARIYAAKGRPAWNPVIMHVASA 71

Query: 68  SMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M    AS  P+S   LA+  WPGPLTLV+       +  + +A   T   RVP      
Sbjct: 72  DMAAGFASHWPISAARLAERCWPGPLTLVVP--RADHVPDIVSAGGDTVALRVPSHPVAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSANR  Q+S T  +H++ +S+   + L++DGG S +G+EST+V+   
Sbjct: 130 ALITAAGCPIAAPSANRFTQVSPTTAQHVV-ASLGDRVGLVLDGGPSTVGIESTVVDCTG 188

Query: 186 EKKVRILRPGGLEIETLK---------------RAISVELEYCVDETST---------PQ 221
           +  V ILRPG L  ETL+               RA+       + E ST         P+
Sbjct: 189 D-TVTILRPGMLGRETLEAALDGLGVAVRHAAPRAVPHAASQALAEASTHADDGTPAAPR 247

Query: 222 SPGMLKSHYAPRSQVRLRA 240
           SPGM   HYAPR+ V L A
Sbjct: 248 SPGMADRHYAPRADVWLFA 266


>gi|321313245|ref|YP_004205532.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis BSn5]
 gi|320019519|gb|ADV94505.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis BSn5]
          Length = 346

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 180/337 (53%), Gaps = 30/337 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  +++N  A++++YE K RP+ NPLI H++D
Sbjct: 16  TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC 121
           IS ++      P     L K FWPG LTL+L    D LS     P  TA L+T   R+P 
Sbjct: 76  ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDALS-----PRVTAGLETVAIRMPD 130

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 LI   G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST+
Sbjct: 131 HPLALALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTV 189

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV-- 236
           ++   +  V +LRPGG+  E ++  I  + ++  + D+   P SPGM  +HYAP + +  
Sbjct: 190 LSCADDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAI 248

Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENA-IISLNLSKT----GKLKEAAFNLFNY 285
                  ++ +    ++   R G +  +  ENA + S +  K+     +L+  A  L++ 
Sbjct: 249 CEGSPEHIQHLIQEYQQGGRRVGVLTTE--ENAGVYSADYVKSCGRRAQLETVAAGLYDA 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           ++  D++    I   S P+ G+G+AI NRL +AA  R
Sbjct: 307 LRSFDENKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343


>gi|110800830|ref|YP_696878.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens ATCC
           13124]
 gi|168210129|ref|ZP_02635754.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|110675477|gb|ABG84464.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens ATCC
           13124]
 gi|170711785|gb|EDT23967.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 350

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 32/336 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122
             + K+ A +   +  L   FWPGPLT++L   D++S      +++A L T   R+P   
Sbjct: 74  KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+ESTIV+
Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187

Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
              E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP+++VR
Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246

Query: 238 LRAIHVNP-----REALIRFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNL 282
           +    +N      +E +  + +  +K          ++ N  I  +L     L     NL
Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTSVTKNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           F  ++  DD G   I   +     LG+AI NRL+++
Sbjct: 307 FEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342


>gi|154249397|ref|YP_001410222.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153333|gb|ABS60565.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 331

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 163/322 (50%), Gaps = 27/322 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           ACE L +G  +A PTETVYGL   + NP A+++++++K RPA NPLI HVS +  ++  A
Sbjct: 23  ACEVLKSGGLVAFPTETVYGLGATATNPEAVKKIFQVKGRPADNPLIVHVSSVDEIENIA 82

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            +    + + K   PGP+T VL      +I    TA L+T   R+P     +KLI   G 
Sbjct: 83  YLSEKYIDIIKKVTPGPITFVLK--KKENIPSEVTAGLETVGVRIPAHPVAQKLINCSG- 139

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSANRSG+ S T+   ++   +   +  IID G    G+ESTIV++  +  V +LR
Sbjct: 140 PIAAPSANRSGKPSPTDANAVI-EDLNGLVECIIDAGECAFGIESTIVDLTKDFPV-VLR 197

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           PG + +E L +   V   Y + E   P +PGM   HYAP   + L       + AL+ + 
Sbjct: 198 PGPITLEELTQLFGVVEFYQLKEGEKPLAPGMKYRHYAPEKHLELVD-----QSALLEYQ 252

Query: 254 NVP-------------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           N               I N +N  I   LSK   +   A NL+   +  D +        
Sbjct: 253 NTDVLILCTKETKERLIPNAKNVYIIGELSKPYTI---AQNLYRSFRDIDKTNYKYAVIE 309

Query: 301 SIPNHGLGIAINNRLERAAAPR 322
            +P +G+  +I NR+++A + +
Sbjct: 310 KLPEYGIFFSIMNRIKKAVSKK 331


>gi|259501683|ref|ZP_05744585.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335]
 gi|315653746|ref|ZP_07906666.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195]
 gi|259166968|gb|EEW51463.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335]
 gi|315489108|gb|EFU78750.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195]
          Length = 338

 Score =  153 bits (386), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 169/331 (51%), Gaps = 26/331 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 12  IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 71

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D +M+KK+ +  P     L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 72  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 131 TNELIHTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V    
Sbjct: 190 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVY--- 245

Query: 241 IHVNPREALIRFGNVP-IKNIENAIISLNLSKTGK---------LKEAAFNLFNYMKIAD 290
           I  +P +    F  +P   ++  A ++ NL   G          + EAA NLF  ++  D
Sbjct: 246 IVDDPAD----FAYIPHDSSVGVAALADNLHDLGDADSFSLGVSIDEAAHNLFGALRYFD 301

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +    +I         +  A  NRL +AA+
Sbjct: 302 SNEQIKTIYVQGFAKGNISAAYMNRLNKAAS 332


>gi|91772214|ref|YP_564906.1| translation factor SUA5 [Methanococcoides burtonii DSM 6242]
 gi|91711229|gb|ABE51156.1| SUA5-type translation factor [Methanococcoides burtonii DSM 6242]
          Length = 350

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 177/330 (53%), Gaps = 26/330 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + +  G  +A PTETVYGL  ++ +P A++++++ K RPA NPLI HV+      
Sbjct: 19  LTRAADIIKEGGIVAFPTETVYGLGANALDPDAVKKIFKAKGRPADNPLIVHVASKDQCN 78

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A ++   +  L   FWPGPLTL+L       +  ++T  L T   R+P      + I 
Sbjct: 79  DLAKNISQTAFKLMDEFWPGPLTLILKAKKV--VPEITTGGLDTVGLRMPANEIALEFIR 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN SG+ S T+ +H+ +  +  +I  IIDGG+ +IGLEST+V++  +   
Sbjct: 137 RSGTPLAAPSANTSGRPSPTSAEHV-TQDLEGKIDAIIDGGMVEIGLESTVVDITGDIPA 195

Query: 190 RILRPGGLEIETLKR-AISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL----RAI 241
            ILRPG +  E ++  A +VE+ Y    ++   T +SPGM  +HY+P ++V L     A 
Sbjct: 196 -ILRPGKVSAEDIRECAGNVEIGYTDKTLEGNETARSPGMKYTHYSPETKVILIEGSSAS 254

Query: 242 HVNPREALI--------RFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLFNYMKIAD 290
             N    LI        R G +  + I ++I   ++ +L K  +  +AA ++F  ++  D
Sbjct: 255 VENTMVNLITNCHKKGKRVGLLATEEILDSINSDVTYSLGKKDEPNQAARSIFMGLRHLD 314

Query: 291 DSGASSIAFS-SIPNHGLGIAINNRLERAA 319
           +     I    ++   G+G AI NRL +AA
Sbjct: 315 NKEIDIILVDGTLKTDGIGAAIFNRLRKAA 344


>gi|228961589|ref|ZP_04123198.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798071|gb|EEM45075.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 346

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISENVTAGLNTVGVRMPDHPIAIALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSAV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G       +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASKVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|227431144|ref|ZP_03913200.1| Sua5/YciO/YrdC/YwlC family protein [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227353096|gb|EEJ43266.1| Sua5/YciO/YrdC/YwlC family protein [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 337

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 173/332 (52%), Gaps = 26/332 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  N + +A   +  G  +A PTETVYGL  D+ N +AI++++  K RPA NPLI  V+D
Sbjct: 8   TTKNDIEEASRLIQNGEVVAFPTETVYGLGADATNESAIKKVFVAKGRPADNPLIMTVAD 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            + + +  ++   +  L   FWPG LT++L  +   ++  L T  L+T  FR+P     +
Sbjct: 68  AAQLDEFVTISDQARGLMDHFWPGSLTIILP-IKPGNVSMLVTGGLQTVAFRLPANDAAR 126

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++  
Sbjct: 127 TLIRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQNKIAGIVDDGPTQVGVESTVIDMSI 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHYAPRSQV- 236
              + ILRPG +    L+  + +++   +D TS        TP++PGM   HYAP   V 
Sbjct: 186 STPI-ILRPGAVTQPQLEEVLQMKV---IDATSTESVASNVTPKAPGMKYRHYAPDKNVV 241

Query: 237 ---RLRAIHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI- 288
               L A+ +     P + ++   ++  K       + +L  T  L+ A   LF  ++  
Sbjct: 242 MFDELDALELKQVLAPNDVVMAKDDMIEKMALTNHQAWSLGNT--LETATEQLFAGLRFY 299

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            DDS  ++I    +P  G+G A NNRL +AA 
Sbjct: 300 DDDSQITTIYVQKMPPIGIGKAFNNRLGKAAG 331


>gi|227514469|ref|ZP_03944518.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum ATCC
           14931]
 gi|227087155|gb|EEI22467.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum ATCC
           14931]
          Length = 343

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 171/329 (51%), Gaps = 27/329 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS ++MV+
Sbjct: 12  VKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVSSLAMVE 71

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             A+  P  +  L   FWPG LT++L +   T +    T  L T  FR P C  T  LI 
Sbjct: 72  HFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQPTLDLIS 130

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+  PSAN SG+ S T   H+    +  +I  IID G +++G+EST++++   + V
Sbjct: 131 QVGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDMSTSQPV 189

Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPG +  + ++  I S+++  + V +   P++PGM   HYAP +QV +    V+P +
Sbjct: 190 -ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYI----VDPAD 244

Query: 248 ALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
                  V  ++ E                ++ +   S    ++EA+ +LF  ++  D+ 
Sbjct: 245 DWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFDNQ 304

Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320
                 F       GLG A  NRL ++A 
Sbjct: 305 EEIHQIFCQGFEPTGLGAAYMNRLNKSAG 333


>gi|229153489|ref|ZP_04281667.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550]
 gi|228630093|gb|EEK86744.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550]
          Length = 346

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 169/325 (52%), Gaps = 21/325 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S + 
Sbjct: 21  LQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQLD 80

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                + P++  L   FWPGPLT++L       I    TA L T   R+P       LIE
Sbjct: 81  GIVKEIPPVAEKLMAHFWPGPLTIILP--RKEGISEKVTAGLNTVGVRMPDHPIALALIE 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++  C   V
Sbjct: 139 EANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVID--CTSTV 195

Query: 190 -RILRPGGLEIETLKRAI-SVELEYCV-DETSTPQSPGMLKSHYAPR--------SQVRL 238
             ILRPGG+  E L+  I +V L+  + DE   P+SPGM  +HYAP+        S+  +
Sbjct: 196 PTILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G +  +  +   +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQYVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   S PN G+G AI NRL +AA 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAG 340


>gi|184154905|ref|YP_001843245.1| hypothetical protein LAF_0429 [Lactobacillus fermentum IFO 3956]
 gi|183226249|dbj|BAG26765.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 343

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 171/329 (51%), Gaps = 27/329 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS ++MV+
Sbjct: 12  VKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVSSLAMVE 71

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             A+  P  +  L   FWPG LT++L +   T +    T  L T  FR P C  T  LI 
Sbjct: 72  HFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQPTLDLIS 130

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+  PSAN SG+ S T   H+    +  +I  IID G +++G+EST++++   + V
Sbjct: 131 QAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDMSTSQPV 189

Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPG +  + ++  I S+++  + V +   P++PGM   HYAP +QV +    V+P +
Sbjct: 190 -ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYI----VDPAD 244

Query: 248 ALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
                  V  ++ E                ++ +   S    ++EA+ +LF  ++  D+ 
Sbjct: 245 DWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFDNQ 304

Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320
                 F       GLG A  NRL ++A 
Sbjct: 305 EEIHQIFCQGFEPTGLGAAYMNRLNKSAG 333


>gi|217967196|ref|YP_002352702.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724]
 gi|217336295|gb|ACK42088.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724]
          Length = 338

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 166/332 (50%), Gaps = 23/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA + L+ G  +A PTETVYGL  D+ NP A+++++  K RP  NP+I HV   
Sbjct: 13  DIEVLKKAAQVLEKGGLVAFPTETVYGLGADALNPEAVKKIFIAKGRPPDNPIIVHVGKK 72

Query: 68  SMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V     +V  ++  L + FWPGPLTL+     +  +  + TA       R P      
Sbjct: 73  EQVYSLTENVPSIAEKLMEEFWPGPLTLI--FYKSNLVDDVVTAGSPKVGIRQPMNKVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL+E +G P+A PSAN SG+ S T  +H++   +  +I +IIDGG    G+EST++++  
Sbjct: 131 KLLEVFGKPIAAPSANVSGRPSPTKAEHVI-EDLEDKIDIIIDGGDVNFGVESTVLDITT 189

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ--SPGMLKSHYAPR---------S 234
           +  + I RPG    E ++R I  ++     E S     SPG+   HYAP+         +
Sbjct: 190 DTPI-IYRPGACPKEEIERVIGKKVMVWNKEKSKEDVPSPGLKYRHYAPKVPLYIVEEFN 248

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIAD 290
           ++    I+   +E   + G +  K  EN     I    +     L E A NLF Y++  +
Sbjct: 249 EIWQNKINDWLKEGK-KVGVLVSKENENLYSDKIKKYVIGSRKNLTEIALNLFFYLRKLE 307

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                 I   S P  GLG+A+ +RL RAA  +
Sbjct: 308 KE-VDIIISESFPEEGLGLAVMDRLRRAAGEK 338


>gi|170017814|ref|YP_001728733.1| putative translation factor (SUA5) [Leuconostoc citreum KM20]
 gi|169804671|gb|ACA83289.1| Putative translation factor (SUA5) [Leuconostoc citreum KM20]
          Length = 336

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/327 (33%), Positives = 170/327 (51%), Gaps = 26/327 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   L AG  +A PTETVYGL  D+ +  A+++++  K RPA NPLI  V+D   + 
Sbjct: 12  IQRAGVLLKAGEVVAFPTETVYGLGADATHEEAVQKVFVAKGRPADNPLIMTVADAEQLT 71

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
              SV   +  L   FWPG LT++L  +    +  + T  L TA FR+P    T+ +I  
Sbjct: 72  NFVSVSEAAKALIDAFWPGSLTIILP-IKPGQVSMMVTGGLDTAAFRLPDNETTRAIIRE 130

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+  PSAN SG+ S T  +H+      K I  I+D G +++G+EST+V++  +    
Sbjct: 131 AGVPIVGPSANTSGKPSPTTAQHVWHDMQGK-IAAIVDDGPTQVGVESTVVDMAADVPT- 188

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHYAPRSQV----RL 238
           ILRPG +  + L+  + +   + +D TS        TP++PGM   HYAP  QV    RL
Sbjct: 189 ILRPGAVTQQQLEDVLGI---HVLDATSTMSVADDVTPKAPGMKYRHYAPDKQVVMFDRL 245

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK----LKEAAFNLFNYMKIADD-SG 293
            A+ +    A         + ++   ++L L++T      L+ A   LF  ++  DD + 
Sbjct: 246 DALALKVSLAPTDVVMAQEETLQR--MALPLAQTWSLGTTLENATEQLFAGLRYYDDVAH 303

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
             +I    +P  GLG A NNRL +A+ 
Sbjct: 304 VKTIYVEKMPPIGLGKAFNNRLGKASG 330


>gi|299782950|gb|ADJ40948.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 343

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 170/329 (51%), Gaps = 27/329 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS ++MV+
Sbjct: 12  VKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVSSLAMVE 71

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             A+  P  +  L   FWPG LT++L +   T +    T  L T  FR P C  T  LI 
Sbjct: 72  HFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQTTLDLIS 130

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+  PSAN SG+ S T   H+    +  +I  IID G +++G+EST++++   + V
Sbjct: 131 QAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDMSTSQPV 189

Query: 190 RILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPG +  + ++  I S+++  + V +   P++PGM   HYAP +QV +    V+P +
Sbjct: 190 -ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYI----VDPAD 244

Query: 248 ALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
                  V  ++ E                ++ +   S    ++EA+ + F  ++  D+ 
Sbjct: 245 DWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHFFEGLRDFDNQ 304

Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320
                 F       GLG A  NRL ++A 
Sbjct: 305 EEIHQIFCQGFEPTGLGAAYMNRLNKSAG 333


>gi|302380242|ref|ZP_07268714.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312025|gb|EFK94034.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 342

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 167/329 (50%), Gaps = 27/329 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL KA E +  G  +A PTETVYGL  +  +  A ++++++K+R   NPLI HV++  MV
Sbjct: 16  ALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDMV 75

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           K  +S +      L    WPGPLT++     +  ++ + +    T   R P     + LI
Sbjct: 76  KNLSSEITEDQKKLMDNLWPGPLTIIFK--KSDKVNDVVSCGGDTVAIRNPSDEIARFLI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+A PSAN+SG+ S TN + +  S +  EI +I+DGG   IG+EST+V++  EK 
Sbjct: 134 DKSGCPIAAPSANKSGRPSPTNAQDVY-SDMQDEIEMILDGGSCNIGIESTVVDL-TEKP 191

Query: 189 VRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRS----------- 234
             ILRPG    E L+  +  E+ Y    +D  + P+SPG    HYAP++           
Sbjct: 192 YTILRPGFYIKEDLEEYLD-EVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250

Query: 235 -QVRLRAIHVNPREALIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
            Q  + ++ +N  E          KN+  EN  I   +SK       A N+F Y++  D 
Sbjct: 251 IQNYVDSLGINTGEVGFILTEETAKNVNFENVKI---ISKRNDYLNFAHNIFTYLRELDK 307

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                +    +    +GI+I NRL+++ A
Sbjct: 308 FNYKLLICEGVNEQKMGISIMNRLKKSCA 336


>gi|160894646|ref|ZP_02075421.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50]
 gi|156863580|gb|EDO57011.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50]
          Length = 359

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 168/334 (50%), Gaps = 29/334 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            RKA + L +G  +A PTETVYGL  D+ NP A  ++Y  K RP+ NPLI H++D + V 
Sbjct: 28  FRKASDILKSGGLVAFPTETVYGLGGDALNPKASEKIYSAKGRPSDNPLIVHIADTASVW 87

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLI 128
           +  A V   +  L + FWPGPLT++       DI P  +T  L+T   R+P      KLI
Sbjct: 88  ELVAEVSTQAQMLMEAFWPGPLTIIF---KKKDIVPHETTGGLETVAIRMPSHPAAMKLI 144

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G  +A PSAN SG+ S T   H+    +   I +I+DGG   IG+ESTIV+V  ++ 
Sbjct: 145 KDSGVYIAAPSANLSGRPSPTTAAHV-EEDLSGRIDMILDGGPVGIGIESTIVDVTGDRP 203

Query: 189 VRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ILRPG +  + +K       I   LE  VD    P++PGM  +HYAP+ ++ +     
Sbjct: 204 T-ILRPGYISADMIKNILGDVMIDPALE-SVDMKVRPKAPGMKYTHYAPKGKLTIVEGER 261

Query: 244 NPREALIR----------FGNVPIKNIENAII--SLNLSKTGKLKE---AAFNLFNYMKI 288
               A I           +    + + EN  +    N+   G  K     + +L+  +++
Sbjct: 262 EKVAAKIAELVACKQAEGYKTAVLCDTENTDLYSCENVLDAGSKKNEITVSSSLYRLLRL 321

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            DD GA  I   S     +G AI NRL +AA  R
Sbjct: 322 CDDIGADYIYSESFREGDMGYAIMNRLIKAAGHR 355


>gi|298674856|ref|YP_003726606.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalobium evestigatum
           Z-7303]
 gi|298287844|gb|ADI73810.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalobium evestigatum
           Z-7303]
          Length = 358

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 172/343 (50%), Gaps = 29/343 (8%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ I  SN   ++ KA E L     +A PTETVYGL  ++ +  ++R+++  K RP  N
Sbjct: 6   EILRINSSNFSESISKAAEILKNRGTVAFPTETVYGLGANALDSVSVRKIFSAKGRPPDN 65

Query: 59  PLICHV-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI H+ S    +     +   +  L   FWPGPLTL+L       +  ++T  L T   
Sbjct: 66  PLIVHIASKEQAIDISEDIPDNAFLLMDAFWPGPLTLILK--RKNFVPDVTTGGLNTVAI 123

Query: 118 RVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P   T  +LI+  G P+A PSAN SG+ S T  +H++S    K I  I+D G   IG+
Sbjct: 124 RMPDNETAIELIKKAGVPIAAPSANISGKPSPTTAEHVISDLYGK-IDAIVDNGAVDIGV 182

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDE--TSTPQSPGMLKSHYAPR 233
           EST+V++  +K + +LRPGG+ IE LK  I  +E+ Y  +       +SPGM   HY+P 
Sbjct: 183 ESTVVDMTSDKPL-LLRPGGIGIEDLKEYIPDIEIGYNSENLIDKKVKSPGMKYIHYSPS 241

Query: 234 SQVRLRAIHVNPREAL-----------IRFGNVPIKNIENAIISLN-----LSKTGKLKE 277
           S+V L        E +           +  G +      N I   N     L     +K+
Sbjct: 242 SKVVLVEGFYRVSEKINQVISDYHKNDLNVGLLVTNETGNQITDKNINIFLLGNRDNIKK 301

Query: 278 AAFNLFNYMKIADDSGASSIAFS-SIPNHGLGIAINNRLERAA 319
            A NLF  ++  DD     I    SI + G+G A+ NRL++AA
Sbjct: 302 VANNLFKGLRTLDDMNLDVIIVDGSIKHEGIGSAVINRLQKAA 344


>gi|296331334|ref|ZP_06873806.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305676320|ref|YP_003867992.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151449|gb|EFG92326.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305414564|gb|ADM39683.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 346

 Score =  152 bits (384), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 176/333 (52%), Gaps = 22/333 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  +++N  A++++Y+ K RP+ NPLI H++D
Sbjct: 16  TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYKAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS +       P     L K FWPG LTL+L       + P  TA L+T   R+P     
Sbjct: 76  ISQLDGLTGPAPEKAKTLMKRFWPGALTLILPCKPGA-LSPRVTAGLETVAIRMPDHPLA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST+++  
Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV------ 236
            +  V +LRPGG+  E ++  I   L  +   D+   P SPGM  +HYAP + +      
Sbjct: 194 GDIPV-LLRPGGITKEQIEAEIGPILVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGG 252

Query: 237 --RLRAIHVNPREALIRFGNVPIKNIENA-IISLNLSKT----GKLKEAAFNLFNYMKIA 289
             R++ +    ++   R G +  +  ENA + S +  K+     +L+  A  L++ ++  
Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTE--ENAGVYSADYVKSCGRRAQLETVAAALYDALRSF 310

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D++    I   S P+ G+G+AI NRL +AA  R
Sbjct: 311 DENKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343


>gi|168213696|ref|ZP_02639321.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens CPE
           str. F4969]
 gi|170714770|gb|EDT26952.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens CPE
           str. F4969]
          Length = 350

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 34/337 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DIKYLEEAAEIIKKGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122
             + K+ A +   +  L   FWPGPLT++L   D++S      +++A L T   R+P   
Sbjct: 74  KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+ESTIV+
Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187

Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
              E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP+++VR
Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246

Query: 238 L-------------RAIHVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           +               +H    E L   I   +  I   +  I+  +L     L     N
Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVK-SLGTREDLTSVTKN 305

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           LF  ++  DD G   I   +     LG+AI NRL+++
Sbjct: 306 LFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342


>gi|320529371|ref|ZP_08030459.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399]
 gi|320138337|gb|EFW30231.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399]
          Length = 355

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 169/343 (49%), Gaps = 30/343 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+S      +  A + +  G  +A PTETVYGL  +  +  A  R+Y  K RP+ NPLI
Sbjct: 4   QIISPVRDADIAHAAQMIRDGALVAFPTETVYGLGANGLDVAACARIYAAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D+SM    A  V P + HL   F PGP+T++L       +  + T  L T   R P
Sbjct: 64  LHIADLSMAADAARIVTPAAAHLLTAFAPGPITVILP--KAAHVPDIVTGGLSTVGVRCP 121

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + LI   G P+A PSAN SG+ S T    ++S  +   IP I+DGG  + G+EST
Sbjct: 122 DHDIARALIRAAGVPIAAPSANTSGRPSPTTAA-MVSDDLAGRIPCILDGGACRWGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-----PQSPGMLKSHYAPRS 234
           IV+   +  V +LRPG +  E +   +  ++E  VD   T     P++PGM   HYAPR+
Sbjct: 181 IVDCTEDGIVTVLRPGAVTREMIAAELP-QMEVRVDPALTAADAVPRAPGMKYRHYAPRA 239

Query: 235 QVR------------LRAIHVNPREALIRFGNVPIKNIENAIISL-----NLSKTGKLKE 277
            +             LRA  +  R    + G +  +    A+  L       +   +  +
Sbjct: 240 SLTVYTGAPDTVTAALRAEILRRRAEGTQVGLIASRETCAALTGLISPAYVYACGARGDD 299

Query: 278 AAFN--LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           AA+   L++ ++  D++ A ++       HGLG+A+ NRL +A
Sbjct: 300 AAYANCLYDALRRFDNTDAGALLAEGTDEHGLGLAVMNRLRKA 342


>gi|296134388|ref|YP_003641635.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola sp. JR]
 gi|296032966|gb|ADG83734.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola potens JR]
          Length = 361

 Score =  152 bits (383), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 182/337 (54%), Gaps = 28/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A E +  G  +A PTETVYGL  ++ +  A+++++  K RP+ NPLI H+++ 
Sbjct: 15  DPETISQAAEIIKRGGVVAFPTETVYGLGANALDGPAVQKIFAAKGRPSDNPLIVHIAEF 74

Query: 68  SMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S ++   +  PL+   A ++FWPGPLT+++      DI    T  LKT   R+P      
Sbjct: 75  SQLEMLVTEVPLTARRAMEVFWPGPLTIIMP--CRDDIPRTVTGGLKTVGVRMPKHPVAL 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    P+A PSAN SG+ S T  +H++   +  +I  +IDGG +++G+EST++++  
Sbjct: 133 ALIKAAKLPIAAPSANSSGKPSPTEARHVM-YDLAGKIDAVIDGGPAQVGVESTVLDMTG 191

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEY-CVDET--STPQSPGMLKSHYAPRSQVRL--- 238
           +  V ILRPGG+  E L+  +  V+L+   VD+     P++PGM   HY+P +++ L   
Sbjct: 192 DTPV-ILRPGGVTREQLEAILGHVDLDLPSVDKIIHQAPKAPGMKYRHYSPEAKLILVKP 250

Query: 239 ---RAIHVNPREALIRFGNVPIK-----NIENA-IISLN------LSKTGKLKEAAFNLF 283
              +A+    +    R+ +  +K     ++E A I+ L       L   G L+E A NLF
Sbjct: 251 VPGKAVADIIQALADRYQSKGMKVALMVSVETASILPLEDVLCGILGHRGHLEEIAGNLF 310

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D      I        G+G+AI NRL +AA+
Sbjct: 311 KVLREVDAQKPDVIIAEGFAEAGIGMAIMNRLTKAAS 347


>gi|116333897|ref|YP_795424.1| putative translation factor (SUA5) [Lactobacillus brevis ATCC 367]
 gi|116099244|gb|ABJ64393.1| translation factor SUA5 [Lactobacillus brevis ATCC 367]
          Length = 338

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 162/320 (50%), Gaps = 23/320 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HV+    VK  A   PLS 
Sbjct: 21  GQLVAFPTETVYGLGADATNEAAVKQVYLAKGRPSDNPLIVHVTGEETVKAFAQ--PLSD 78

Query: 82  H---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
               L K FWPGPLTL+   L    +    T  L TA FR P    T  LI+  G PL  
Sbjct: 79  KAEALIKAFWPGPLTLIF-ALQPGKLSSAVTGGLNTAAFRNPDNAATLALIKAAGVPLVG 137

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSAN SG+ S T  KH+    +  +I  I+D G +K+G+EST++++  +    ILRPGG+
Sbjct: 138 PSANTSGKPSPTLAKHVY-HDLNGKIAGILDDGPTKVGVESTVLDMSTDIPT-ILRPGGV 195

Query: 198 EIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI----R 251
             E L   I       + V +T  P++PGM   HYAP +QV +     +   AL     +
Sbjct: 196 TEEQLAAVIGTVQSSHHKVGKTEVPKAPGMKYKHYAPNAQVTIVDHEADWTAALQWASEQ 255

Query: 252 FGNVPIKNIENAIISLNL-------SKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIP 303
            G + +  ++  + + NL       S    L  A+  LF  ++  D +S  + I      
Sbjct: 256 SGTIGVMAVDRILQAHNLPDNVEAFSLGHDLTSASHRLFAGLRHFDLESPVTGILAQGFT 315

Query: 304 NHGLGIAINNRLERAAAPRN 323
             GLG A  NRL ++A  ++
Sbjct: 316 AEGLGAAYMNRLNKSAGQQH 335


>gi|18311182|ref|NP_563116.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens str.
           13]
 gi|18145865|dbj|BAB81906.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 350

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 34/337 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122
             + K+ A +   +  L   FWPGPLT++L   D++S      +++A L T   R+P   
Sbjct: 74  KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+ESTIV+
Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187

Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
              E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP+++VR
Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVDIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246

Query: 238 L-------------RAIHVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           +               +H    E L   I   +  I   +  I+  +L     L     N
Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVK-SLGTREDLTSVTKN 305

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           LF  ++  DD G   I   +     LG+AI NRL+++
Sbjct: 306 LFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342


>gi|116618871|ref|YP_819242.1| translation factor SUA5 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097718|gb|ABJ62869.1| translation factor SUA5 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 337

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 172/332 (51%), Gaps = 26/332 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  N + +A   +  G  +A PTETVYGL  D+ N +AI++++  K RPA NPLI  V+D
Sbjct: 8   TTKNDIEEASRLIQNGEVVAFPTETVYGLGADATNESAIKKVFVAKGRPADNPLIMTVAD 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            + + +  ++   +  L   FWPG LT++L  +    +  L T  L+T  FR+P     +
Sbjct: 68  AAQLDEFVTISDQARGLMDHFWPGSLTIILP-IKPGKVSMLVTGGLQTVAFRLPANDAAR 126

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST+V++  
Sbjct: 127 TLIRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQNKIAGIVDDGPTQVGVESTVVDMSI 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHYAPRSQV- 236
              + ILRPG +    L+  + +++   +D TS        TP++PGM   HYAP   V 
Sbjct: 186 STPI-ILRPGAVTQPQLEEVLQMKV---IDATSTESVASNVTPKAPGMKYRHYAPDKNVV 241

Query: 237 ---RLRAIHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI- 288
               L A+ +     P + ++   ++  K       + +L  T  L+ A   LF  ++  
Sbjct: 242 MFDGLDALELKQVLAPNDVVMAKDDMIEKMALTNHQAWSLGNT--LETATEQLFAGLRFY 299

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            DDS  ++I    +P  G+G A NNRL +AA 
Sbjct: 300 DDDSQITTIYVQKMPPIGIGKAFNNRLGKAAG 331


>gi|283781887|ref|YP_003372642.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068]
 gi|283440340|gb|ADB18782.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068]
          Length = 345

 Score =  152 bits (383), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 168/337 (49%), Gaps = 28/337 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     + +  + L AG  +AIPTETVYGLA D+ NP A+R+++  K RPA +PLI H++
Sbjct: 16  IVSDEIIARGAQLLAAGELVAIPTETVYGLAADATNPMAVRKIFAAKGRPADHPLIVHIA 75

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               + +  + + P +  LA  FWPGPLT+++   S  D   +    L T   R P    
Sbjct: 76  YPDEIDRWGTEIPPAAWDLAAAFWPGPLTMIVRRRSNVD--SVVAGGLDTIAVRCPSHPV 133

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L+   G  +A PSAN+ G +S T   H+L +     +PL+IDGG  ++GLESTIV++
Sbjct: 134 AQRLLRELGRGVAAPSANKFGHVSPTTAAHVL-AEFGDTLPLVIDGGACEVGLESTIVDL 192

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             +    ILRPG +    L+  + + +       STP S G L SHYAP   V +    V
Sbjct: 193 S-QSTPTILRPGAISQTDLELVLGLAIGDP-HANSTPCS-GRLASHYAPNCIVEI----V 245

Query: 244 NPREALIRFGNVP--------IKNIENAIISLNLSKTGKL-------KEAAFNLFNYMKI 288
              E   +  ++         +   E ++ +L      ++       K  A  L+  ++ 
Sbjct: 246 TEEELTSKLASLDASGRRVGLLATEEGSVRALAALPADRIVWLPSDAKLYARGLYGALRA 305

Query: 289 ADDSGASSIAFSSIP-NHGLGIAINNRLERAAAPRNQ 324
           AD+ G       S P  H L  AI +RL++AA PR+ 
Sbjct: 306 ADERGFDHFLVVSPPLGHPLSAAILDRLQKAAGPRDS 342


>gi|168205563|ref|ZP_02631568.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens E str.
           JGS1987]
 gi|169344175|ref|ZP_02865157.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens C str.
           JGS1495]
 gi|169297633|gb|EDS79733.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens C str.
           JGS1495]
 gi|170662901|gb|EDT15584.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens E str.
           JGS1987]
          Length = 350

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 34/337 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122
             + K+ A +   +  L   FWPGPLT++L   D++S      +++A L T   R+P   
Sbjct: 74  KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+ESTIV+
Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187

Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
              E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP+++VR
Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246

Query: 238 L-------------RAIHVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           +               +H    E L   I   +  I   +  I+  +L     L     N
Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVK-SLGTREDLTSVTKN 305

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           LF  ++  DD G   I   +     LG+AI NRL+++
Sbjct: 306 LFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342


>gi|110802725|ref|YP_699474.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens SM101]
 gi|110683226|gb|ABG86596.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens SM101]
          Length = 350

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 32/336 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122
             + K+ A +   +  L   FWPGPLT++L   D++S      +++A L T   R+P   
Sbjct: 74  KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+ESTIV+
Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187

Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
              E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP+++VR
Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246

Query: 238 LRAIHVNP-----REALIRFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNL 282
           +    +N      +E +  + +  +K          ++ N  I  +L     L     NL
Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTSITRNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           F  ++  DD G   I   +     LG+AI NRL+++
Sbjct: 307 FETLRAFDDLGVDIIITEAFEEKDLGVAIMNRLKKS 342


>gi|229542479|ref|ZP_04431539.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus coagulans 36D1]
 gi|229326899|gb|EEN92574.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus coagulans 36D1]
          Length = 353

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 174/329 (52%), Gaps = 22/329 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + L     +A PTETVYGL  D+ +  A+ ++++ K RP+ NPLI H+++   ++
Sbjct: 21  LAEAAQLLKEKQTVAFPTETVYGLGADATSDEAVDKIFKAKGRPSDNPLIVHIAEEKQLE 80

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           + A   P +   L K FWPGPLTLV+ +     +    TA L T   R+P       LI 
Sbjct: 81  ELAEEIPETAKVLMKAFWPGPLTLVVKVKKGA-LSEKVTAGLDTVGIRMPRHPVALALIR 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSANRSG+ S T  +H+    +  +I  I+DGG + +G+EST+++V  E  V
Sbjct: 140 MSGLPIAAPSANRSGKPSPTLARHV-REDLAGKIAGIVDGGETGVGVESTVLDVTAEVPV 198

Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNP 245
            ILRPGG+  E L+  I  V L+  +  T     P++PGM  +HYAP + V L    +  
Sbjct: 199 -ILRPGGVTKEQLEERIGKVRLDPGLKGTGAGARPKAPGMKYTHYAPDAPVYLVDGSIAF 257

Query: 246 REALI----RFGNV-------PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
            + +I    + G V           I  A +     +   L+  A +L++ ++ + ++  
Sbjct: 258 MQQMIDAHRKKGEVTGAIVTEETSGIVRADVVAVCGRRASLETVAQHLYDTLR-SFNAQK 316

Query: 295 SSIAFSSI-PNHGLGIAINNRLERAAAPR 322
             + FS I P  G+G AI NRLE+AA  R
Sbjct: 317 VDVIFSEIFPREGIGRAIMNRLEKAAGHR 345


>gi|168215829|ref|ZP_02641454.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens NCTC
           8239]
 gi|182382042|gb|EDT79521.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens NCTC
           8239]
          Length = 350

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 34/337 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122
             + K+ A +   +  L   FWPGPLT++L   D++S      +++A L T   R+P   
Sbjct: 74  KDIDKYVAEIPKYAQELMDKFWPGPLTIILRKKDIVSD-----VTSAGLDTVGVRMPNDE 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+ESTIV+
Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187

Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
              E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP+++VR
Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246

Query: 238 L-------------RAIHVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           +               +H    E L   I   +  I   +  I+  +L     L     N
Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVK-SLGTREDLTSVTKN 305

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           LF  ++  DD G   I   +     LG+AI NRL+++
Sbjct: 306 LFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342


>gi|282881792|ref|ZP_06290449.1| protein Sua5 [Peptoniphilus lacrimalis 315-B]
 gi|281298365|gb|EFA90804.1| protein Sua5 [Peptoniphilus lacrimalis 315-B]
          Length = 350

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 169/341 (49%), Gaps = 37/341 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+K  E    G  +  PTETVYGL  +  +  A++++YE K RP  NP I H++  
Sbjct: 16  DKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAKGRPNDNPSILHIAKT 75

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
           S + +  S  P ++      FWPGPLT++      +DI P+  T  L T   R+P     
Sbjct: 76  SQLDELVSEIPKIAKKCINNFWPGPLTII---FKKSDIVPMEVTGGLDTVAIRMPSNKIA 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            K+++    P+A PSAN SG+ S T   H++   + + + +I+DGG S +G+EST+++V 
Sbjct: 133 AKILKNVNLPIAAPSANISGRPSPTKASHVIEDLMGR-VDIIVDGGKSIVGIESTVLDVT 191

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR 237
            +  + ILRPG + +E L++   ++    +D T       S P+SPG    HYAP+    
Sbjct: 192 TDPPM-ILRPGKVTLEDLQK---IDKSIGIDNTTIDAKDKSIPKSPGQKYKHYAPKG--- 244

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAI----------------ISLNLSKTGKLKEAAFN 281
           +    V   + ++   N  IKN +  +                + LNL     L+E A +
Sbjct: 245 MATCFVGEMDGIVNEINKRIKNSKGKVAVLATSQNLDKYVGADLILNLGDRDNLEEVANS 304

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           LF+ ++  D+     I        G+G++I NRL +A A R
Sbjct: 305 LFDLLRKCDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGR 345


>gi|253581044|ref|ZP_04858305.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847707|gb|EES75676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 350

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 178/348 (51%), Gaps = 37/348 (10%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++S+T    D  A+R+  + L  G  +A PTETVYGL  D+ NP A  ++Y  K RP+ 
Sbjct: 4   EVVSMTADNLDMEAIRRGGDILKQGGLVAFPTETVYGLGGDALNPQASMKIYAAKGRPSD 63

Query: 58  NPLICHVSDIS-MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTA 115
           NPLI H+++   +    A V   +  LA+ +WPGPLT++      +D+ P  +T  L + 
Sbjct: 64  NPLIVHIAEFDKLAPIVAEVPEKAKILAEKYWPGPLTMI---FPKSDLVPQETTGGLDSV 120

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R P     ++LI+  G  +A PSAN SG+ S T  +H+    + + I +IIDGG   I
Sbjct: 121 AVRFPSDRIAQELIKAAGGYVAAPSANTSGRPSPTTAQHV-EEDLGEAIEMIIDGGQVGI 179

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELE---YCVDETSTPQSPGMLKSHY 230
           GLESTIV+   +  V +LRPG + +E L+  +  V ++      D    P++PGM   HY
Sbjct: 180 GLESTIVDFTEDVPV-VLRPGYISLEMLQETLGDVRMDKGLIAADSKVRPKAPGMKYRHY 238

Query: 231 APRSQVRLRAIHVNPREALIRFGN-----VPIKNIENAIISLNLSKT----------GKL 275
           AP++ +   AI   P EA+++  N           +  II+ + +K           G  
Sbjct: 239 APKADL---AIVEGPEEAVVKKINELAAEAKAHGEQVGIIATDETKDRYPEGLVVSIGSR 295

Query: 276 KEA---AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           KE    A +L+  ++  D S   SI   +     +G AI NRL +AA 
Sbjct: 296 KEEETIAHHLYEVLRDFDQSAVRSIYSEAFYTPRMGQAIMNRLLKAAG 343


>gi|205375324|ref|ZP_03228114.1| SUA5 protein [Bacillus coahuilensis m4-4]
          Length = 339

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 165/324 (50%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E L     +A PTETVYGL  ++ +  A+R++YE K RP+ NPLI H+ D   + 
Sbjct: 15  IRQAAELLQRNEVVAFPTETVYGLGANATSSEAVRKIYEAKGRPSDNPLIVHIDDKRQLG 74

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              +  P S + L   FWPGPLT++           + TA L T   RVP     + ++ 
Sbjct: 75  DLVAEIPASAYLLMDEFWPGPLTIIFAKKPGV-FSDIVTAGLDTVAIRVPDHPVARAILH 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSANRSG+ S T   H+ ++ +   I  I+DGG + +G+EST+++      +
Sbjct: 134 ETNLPIAAPSANRSGRPSPTTAHHV-ATDLTGRIAGIVDGGPTGVGVESTVIDCTVTPPM 192

Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDE-TSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPGG+  E ++  I  V ++  + E    P+SPGM  +HYAP + V L   +V   +
Sbjct: 193 -ILRPGGVTAEQIREVIGDVSIDPSLKEGEGAPKSPGMKYTHYAPEAPVYLVEGNVQRLQ 251

Query: 248 ALI--------RFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            LI        + G +  +   +   A + +       L   A +L+  ++  +++    
Sbjct: 252 QLIDRKQAEGMKVGVMSTREAASDLKADVVVTCGSRENLSTVARDLYEALRHFNETDVDI 311

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I   +    G+G AI NRLE+AA 
Sbjct: 312 ILSETFSKEGIGSAIMNRLEKAAG 335


>gi|300813902|ref|ZP_07094206.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511965|gb|EFK39161.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 350

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 169/341 (49%), Gaps = 37/341 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+K  E    G  +  PTETVYGL  +  +  A++++YE K RP  NP I H++  
Sbjct: 16  DKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAKGRPNDNPSILHIAKT 75

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
           S + +  S  P ++      FWPGPLT++      +DI P+  T  L T   R+P     
Sbjct: 76  SQLDELVSEIPKIAKKCINNFWPGPLTII---FKKSDIVPMEVTGGLDTVAIRMPSNKIA 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            K+++    P+A PSAN SG+ S T   H++   + + + +I+DGG S +G+EST+++V 
Sbjct: 133 AKILKNVNLPIAAPSANISGRPSPTKASHVIEDLMGR-VDIIVDGGKSIVGIESTVLDVT 191

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR 237
            +  + ILRPG + +E L++   ++    +D T       S P+SPG    HYAP+    
Sbjct: 192 TDPPM-ILRPGKVTLEDLQK---IDKSIGIDNTTIDAKDKSIPKSPGQKYKHYAPKG--- 244

Query: 238 LRAIHVNPREALIRFGNVPIKNIE----------------NAIISLNLSKTGKLKEAAFN 281
           +    V   + ++   N  IKN +                 A + LNL     L+E A +
Sbjct: 245 MATCFVGEMDGIVNEINKRIKNSKGRVAVLATSQNLDKYVGADLILNLGDRDNLEEVANS 304

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           LF+ ++  D+     I        G+G++I NRL +A A R
Sbjct: 305 LFDLLRKCDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGR 345


>gi|296418740|ref|XP_002838983.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634977|emb|CAZ83174.1| unnamed protein product [Tuber melanosporum]
          Length = 435

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 173/364 (47%), Gaps = 61/364 (16%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL+ A + L  G  +A PTETVYGL  D+ +   +  +Y  K+RP+ NPLI HVS +  +
Sbjct: 72  ALKDAADLLRQGKCVAFPTETVYGLGADATSTVGVNSIYTAKQRPSDNPLIVHVSSLRQL 131

Query: 71  KK-HASVDPLSL------------------HLAKLFWPGPLTLVLDLLSTTDIHPLS--- 108
           +   A  +P S                    L   FWPGPLT++L L +     PLS   
Sbjct: 132 RGILAPTNPTSTTNGHATNTCGGEIPEVYNALISKFWPGPLTILLPLPTINS--PLSASV 189

Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           TA       R+P     + L      PLA PSAN SG  S T+  H+L + +   IPLII
Sbjct: 190 TAGQPKFAARLPSHPIARALCYLSSLPLAAPSANASGNPSPTSASHVL-TDLWNRIPLII 248

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK-------RAI--SVELEYCVDETS 218
           DGG   +GLEST+V+   +  V +LRPGG+ +E ++       R I     LE   D + 
Sbjct: 249 DGGPCSVGLESTVVDGLRDPPV-VLRPGGISVEAIRELGGIWARTIISKASLEDAADPSI 307

Query: 219 TPQSPGMLKSHYAPRSQVRLRAIHVNP--REALIRFGNVPIKNI------------ENAI 264
           TP++PGM   HY+PR+ V L      P   + L+R   +  KN+            E+ I
Sbjct: 308 TPEAPGMKYKHYSPRASVVLYEFGTPPLCGKDLVRSPILSAKNLNGKVGILRTRTWEDGI 367

Query: 265 ISLNLSKTGKLKEAAFN--------LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
             L L   G+LK  + N        LF  ++  DD G   I    I     G+A+ NRL 
Sbjct: 368 GELTL---GRLKYESNNGGEEIGRRLFAALRELDDEGVDVIHVEGIEEVLEGLAVMNRLR 424

Query: 317 RAAA 320
           +AA+
Sbjct: 425 KAAS 428


>gi|327310576|ref|YP_004337473.1| sua5 family protein [Thermoproteus uzoniensis 768-20]
 gi|326947055|gb|AEA12161.1| sua5 family protein [Thermoproteus uzoniensis 768-20]
          Length = 346

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 163/318 (51%), Gaps = 19/318 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   + +G  +A PTETVYGL  D+ N  A  R+++ K RPA NPLI HVS + M  + 
Sbjct: 19  EAAAVIRSGGLVAFPTETVYGLGADAFNAEASARIFKAKGRPADNPLIVHVSSLDMALEL 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
             +   ++ +AK  WPGP+T V+      D+  + TA   T   R P      KLIE  G
Sbjct: 79  GDMPEKAVEVAKKAWPGPITFVVK--KKADLPAVVTAGRPTVALRCPAHPVALKLIEAAG 136

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSAN++G+ S T   H+ +  +   + LI+D G +  G+ESTIV+V  E  V +L
Sbjct: 137 TPIAAPSANKAGRPSPTEASHV-AEDLGDSVDLILDAGRTFFGVESTIVDVTREPPV-LL 194

Query: 193 RPGGLEIETLKRAISVELEY-----CVDETSTPQSPGMLKSHYAPRSQVRLRAIHV---- 243
           RPG   +E LK  +  E+E       + E     +PGM   HYAP + + L    +    
Sbjct: 195 RPGPFTVEELKSLLG-EVEIPPFARGLGEADVALAPGMKYRHYAPETPLILVDFDLASAV 253

Query: 244 -NPREALIRFGNVPIKN-IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
              RE  +R   + +     +A  ++N+     L E A NL++ ++  D          +
Sbjct: 254 RAARELGLRVAVLCLAGRCADADAAINVGS--DLYEIAKNLYDALRRVDKVKVDVALAPT 311

Query: 302 IPNHGLGIAINNRLERAA 319
           +P  G+G+AI NRL +A+
Sbjct: 312 VPERGIGLAIMNRLRKAS 329


>gi|332980647|ref|YP_004462088.1| translation factor SUA5 [Mahella australiensis 50-1 BON]
 gi|332698325|gb|AEE95266.1| translation factor SUA5 [Mahella australiensis 50-1 BON]
          Length = 350

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 181/336 (53%), Gaps = 28/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + +A+RKA   +  G  +A PTETVYGL  ++ + +A+ R++E K RP+ NPLI H+ DI
Sbjct: 14  NEDAIRKAAILIRKGEVVAFPTETVYGLGANALDASAVHRIFEAKGRPSDNPLIVHICDI 73

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           SM+++    V   +L L + FWPGPLT+++       I    TA L T   R+P      
Sbjct: 74  SMLEEVVEHVPSKALLLMERFWPGPLTIIMK--KHKKIPYEVTAGLDTVGVRMPDHPIAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI + G P+A PSAN SG+ S T  +H++ + +   I  II GG  K+G+EST++++  
Sbjct: 132 ALIRSAGVPIAAPSANISGRPSPTKPEHVI-ADMQGRIAAIIAGGTCKVGVESTVLDLSG 190

Query: 186 EKKVRILRPGGLEIETLKRAI------SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL- 238
              V + RPGG+ +E L+  I      S  L+    E + P SPGM   HY+P+++V + 
Sbjct: 191 NNPV-LYRPGGITLEMLEEVIGKVDTASGILKPVFAEGAVP-SPGMKYKHYSPKAKVIIV 248

Query: 239 -----RAIHVNPREALI---RFGNVPI------KNIENAIISLNLSKTGKLKEAAFNLFN 284
                R I    +EA     +  NV I      K + +  + + +    K +  A  LF+
Sbjct: 249 DGPIDRVIARIKKEADAYRQKGYNVGIMATEQTKAMYSEYMVIAVGDREKPETIAAALFD 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +++ D + A  +   ++  +G+G+AI NR+ RAA 
Sbjct: 309 TLRLFDKAKADVVLAEAVDANGVGLAIMNRMVRAAG 344


>gi|182623990|ref|ZP_02951778.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens D str.
           JGS1721]
 gi|177910883|gb|EDT73237.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens D str.
           JGS1721]
          Length = 350

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 172/336 (51%), Gaps = 32/336 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A E +  G     PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DIKYLEEAAEIIKNGGIGVFPTETVYGLGANALDGEAVKKIFVAKGRPQDNPLIIHIADK 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122
             + K+ A +   +  L   FWPGPLT++L   D++S      +++A L T   R+P   
Sbjct: 74  KDIDKYVAEIPKYAQELMDKFWPGPLTIILKKKDIVSD-----VTSAGLDTVGVRMPNDE 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+ESTIV+
Sbjct: 129 IALKLIELSGVPIAAPSANISGRPSPTDIER-CEEDLNGRVDFIIGAKKSEIGVESTIVD 187

Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
              E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP+++VR
Sbjct: 188 ATGE-HLCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAPKAKVR 246

Query: 238 LRAIHVNP-----REALIRFGNVPIK----------NIENAIISLNLSKTGKLKEAAFNL 282
           +    +N      +E +  + +  +K          ++ N  I  +L     L     NL
Sbjct: 247 MVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTSVTKNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           F  ++  DD G   I   +     LG+AI NRL+++
Sbjct: 307 FEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKS 342


>gi|166033062|ref|ZP_02235891.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC
           27755]
 gi|166027419|gb|EDR46176.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC
           27755]
          Length = 353

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 170/330 (51%), Gaps = 25/330 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A +FL  G  +A PTETVYGL  D+ N TA  ++Y  K RP+ NPLI H++++  + 
Sbjct: 22  IGQAGDFLKEGGLVAFPTETVYGLGADALNKTASTKIYAAKGRPSDNPLIVHITNMGALD 81

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           K A + P ++  +A  +WPGPLT++     T ++   +T  L T   R+P     + LI+
Sbjct: 82  KIADIIPEVAYKVADAYWPGPLTMIFQ--KTEEVPYETTGGLDTVAVRMPSDEIARALID 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  +A PSAN SG+ S T  +H+    +  +I +I+DGG   IG+ESTI+++     +
Sbjct: 140 AGGGYIAAPSANTSGRPSPTKAEHV-EEDLSGKIEMILDGGAVDIGVESTILDMTVTPPM 198

Query: 190 RILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRS---------QV 236
            ILRPG +  E L   I  V+++  +   D    P++PGM   HYAP++         ++
Sbjct: 199 -ILRPGAITKEMLTELIGEVDIDRTLITPDSKVKPKAPGMKYRHYAPKADLSIVEGPMEL 257

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNYMKIAD 290
            + AI+    E + +   V +   +  +      +  ++         A +L+  ++  D
Sbjct: 258 VIDAINQMSAERMAKGHRVGVIGTQETVGRYKADVVKSIGTRADEATIANHLYAVLREFD 317

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D+    I   S    G+G AI NRL +AA 
Sbjct: 318 DAEVEYIYSESFAAGGIGSAIMNRLLKAAG 347


>gi|229829441|ref|ZP_04455510.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM
           14600]
 gi|229791872|gb|EEP27986.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM
           14600]
          Length = 504

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 170/335 (50%), Gaps = 33/335 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+  E L  G  +A PTETVYGL  D+ N  + R++Y  K RP+ NPLI H++D S ++
Sbjct: 10  LREPGEILREGGLVAFPTETVYGLGGDAENAESSRKIYAAKGRPSDNPLIVHIADFSQME 69

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLI 128
             A  + P    LA  FWPGPLT++   +   D  PL +T  L T   R+P     ++LI
Sbjct: 70  AIAQELAPQVRILADAFWPGPLTMI---VRKNDRIPLETTGGLDTVAVRMPSHPVARQLI 126

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            + G  +A PSAN SG+ S T  +H+ +  +  +I  IIDGG  +IGLESTIV++  E  
Sbjct: 127 LSSGCMIAAPSANSSGRPSPTRAEHV-ADDLSGKIDAIIDGGPVEIGLESTIVDL-SEGI 184

Query: 189 VRILRPGGLEIETLKRAIS---VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRL---- 238
             +LRPG + +  L+  +    V ++  + E   ++ P++PGM   HYAPR  +++    
Sbjct: 185 PTVLRPGYINLRMLEEVLGQDHVRMDPGLMEENVSARPKAPGMRYKHYAPRGDLKIVEGA 244

Query: 239 -------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                         AI    +  +I       + +   I+   +      +E A +LF  
Sbjct: 245 ADDVVETINRLSAEAIATGSKVGVIASAETRSRYLYGDIV--EIGPRSDEEEIARHLFGV 302

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD G   I   +     +G AI NRL +AAA
Sbjct: 303 LRHFDDQGIEIIYSEAFDTPQMGTAIMNRLIKAAA 337


>gi|320102680|ref|YP_004178271.1| Sua5/YciO/YrdC/YwlC family protein [Isosphaera pallida ATCC 43644]
 gi|319749962|gb|ADV61722.1| Sua5/YciO/YrdC/YwlC family protein [Isosphaera pallida ATCC 43644]
          Length = 349

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 13/326 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L +A   +  G  +A PTETVYGL  D+ NP A+  ++  K RP  NPLI HV + + 
Sbjct: 25  DQLERAAHLIRQGRLVAFPTETVYGLGADATNPQAVASIFRAKGRPLSNPLIVHVREQTD 84

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +   +  P L+  LA  FWPGPLTLVL   S           ++T   R P     + L
Sbjct: 85  ARSLTTTWPELAQALADCFWPGPLTLVLPRSSRVPDVVAGGPAMRTVGLRAPAHPVARAL 144

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PLA PSANRS  +S T  +H+  + + K + LI+DGG    G+EST++++   +
Sbjct: 145 LEACGVPLAAPSANRSEGLSPTRAEHVARAGL-KGVALILDGGPCVQGIESTVLDLSGPR 203

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
             R+LRPG L+  TL++ +  ELE          SPG+   HYAPR+ +R+     N R 
Sbjct: 204 P-RLLRPGALDPATLRQVVP-ELELPDAAAPLVGSPGLAPRHYAPRAPLRVAVDPANWRG 261

Query: 248 ALI---RFG---NVPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
            +    R G    V  ++ +  +   ++ ++        A  L+  +   D +G + I  
Sbjct: 262 GIAEAERLGVIHRVSSQDFQSNHPAHAVRIALPDDPAGFAAGLYAALHDLDQAGVTQIVV 321

Query: 300 SSIPNHGLGIAINNRLERAAAPRNQS 325
            + P     +A+ +RL RA+ P   S
Sbjct: 322 EAPPATEEWLAVRDRLRRASCPPGGS 347


>gi|268319747|ref|YP_003293403.1| hypothetical protein FI9785_1276 [Lactobacillus johnsonii FI9785]
 gi|262398122|emb|CAX67136.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 330

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 165/328 (50%), Gaps = 20/328 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I +   + +A   L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPLI  VS
Sbjct: 5   IFNKEQISEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M++K+ +  P  +  L K FWPGPLT++L +   T +    T  L TA FR P    
Sbjct: 65  DEEMMEKYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPNDEM 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLESTIV++
Sbjct: 124 THDLISELGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLESTIVDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240
             EK   +LRPG +  E +   +  E+      T T   P++PGM   HYAP + V +  
Sbjct: 183 SVEKPT-VLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAPVLI-- 239

Query: 241 IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSG 293
             V+  E   +       G   +  +   I S N    GK + +AA NLF  ++  DD  
Sbjct: 240 --VDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDDEN 297

Query: 294 ASSIAFSSIPNHG-LGIAINNRLERAAA 320
                +    +HG +  A  NRL +AAA
Sbjct: 298 KIKRIYVQGFDHGAISAAYMNRLNKAAA 325


>gi|52843166|ref|YP_096965.1| Sua5/YciO/YrdC/YwlC family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630277|gb|AAU29018.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 322

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 169/332 (50%), Gaps = 20/332 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  +N L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PLI H
Sbjct: 1   MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKGRPLNHPLIVH 59

Query: 64  V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + S+  + K    V   +  LA  FWPGPLTLV        I+PL T    T   R P  
Sbjct: 60  IASNWDLHKLVEEVPEYAHQLASKFWPGPLTLVF-YCKKDQINPLITGGQSTIAIRCPDH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+KL++    P+  PSAN  G+IS T   H+  S    E+  I+DGG  ++G+ESTIV
Sbjct: 119 PLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +       +ILR G ++ +T+   I++    C  + +  + PG L SHY P+  +     
Sbjct: 178 DATNPVSYQILRHGIIDEKTIAETIAIG---CSTQKNNIRVPGKLDSHYQPQKTL----Y 230

Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293
           + +  E L  F     G V  I N +   +  NL     +  +++A++L+  +++AD S 
Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           A  IA    PN      +  R+ +A  P +Q 
Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|227889715|ref|ZP_04007520.1| translation factor (SUA5) [Lactobacillus johnsonii ATCC 33200]
 gi|227849579|gb|EEJ59665.1| translation factor (SUA5) [Lactobacillus johnsonii ATCC 33200]
          Length = 336

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 166/328 (50%), Gaps = 20/328 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I +   + +A   L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPLI  VS
Sbjct: 11  ILNKEQIPEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPLIVTVS 70

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
           D  M++K+ +  P  +  L K FWPGPLT++L +   T +    T  L TA FR P    
Sbjct: 71  DEEMMEKYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPNDDM 129

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLESTIV++
Sbjct: 130 THDLISELGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLESTIVDL 188

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240
             EK   +LRPG +  E +   +  E+      T T   P++PGM   HYAP + V +  
Sbjct: 189 SVEKPT-VLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAPVLI-- 245

Query: 241 IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSG 293
             V+ +E   +       G   +  +   I S N    GK + +AA NLF  ++  DD  
Sbjct: 246 --VDKKEDFSKIQWDDETGVAALDEVLENIDSPNKYSLGKTIDKAAHNLFGALRYFDDEN 303

Query: 294 ASSIAFSSIPNHG-LGIAINNRLERAAA 320
                +    +HG +  A  NRL +AAA
Sbjct: 304 KIKRIYVQGFDHGAISAAYMNRLNKAAA 331


>gi|326203240|ref|ZP_08193105.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM
           2782]
 gi|325986498|gb|EGD47329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM
           2782]
          Length = 354

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 176/336 (52%), Gaps = 27/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  AL  A E L  G+ +A PTETVYGL  ++ +  A+ ++++ K RP+ NPLI H++D 
Sbjct: 14  DKIALEPAAEALKEGMTVAFPTETVYGLGANALDGAAVSKIFKAKGRPSDNPLIVHIADR 73

Query: 68  SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V +  S  P  ++ L    WPGPLTLV+    ++ I    TA L T   R+P      
Sbjct: 74  EKVSELTSFIPAKAVALMDKLWPGPLTLVMK--KSSAIPREITAGLDTVAIRMPGHPVAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN SG+ S T  +H+L   +  +I +I+D G S +GLEST+++V  
Sbjct: 132 ELIRLAGIPVAAPSANVSGKPSPTTARHVL-DDLEGKIEIIVDAGSSSVGLESTVLDVSV 190

Query: 186 EKKVRILRPGGL---EIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +  V +LRPGG+   +IE +   I ++  +   V   + P+SPGM   HY+P++ V +  
Sbjct: 191 DPPV-LLRPGGITPRQIEEIIGQIDIDKTIMGKVTADNVPKSPGMKYKHYSPKAHVIIVE 249

Query: 241 IHVNPR--EALIRFGNVPIKNIENAII--------------SLNLSKTGKLKEAAFNLFN 284
            +   +  E + R     IK  +   +              ++++      +  A +LF+
Sbjct: 250 SNDMDKQTEVVCRLAEKYIKEDKKVGVCSTDQTFDRYKLFETISMGDRNHPETIASSLFS 309

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  DD     I   ++  +G+G+AI NR+ +AA 
Sbjct: 310 ILREFDDREVDIILAEAVDQNGVGLAIMNRMVKAAG 345


>gi|227510128|ref|ZP_03940177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190333|gb|EEI70400.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 340

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 171/338 (50%), Gaps = 32/338 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + + +A  F+  G  ++ PTETVYGL  D+ N TA++++Y  K RP+ NPLI  VS
Sbjct: 5   ILKKDQIEQAANFIKEGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + MV K+  VD +S    KL   FWPG LT++  L     +    T  L TA FR P  
Sbjct: 65  SVEMVTKY--VDHISDDAQKLIKAFWPGSLTMIFKLKPNV-LSKAVTGGLNTAAFRFPQN 121

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G + +G+EST++
Sbjct: 122 QLTLDLITKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAILDDGPTTVGVESTVL 180

Query: 182 NVQCEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           ++   K   ILRPG +   +IE +     ++  + V    TP++PGM   HYAP +QV +
Sbjct: 181 DMSV-KTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQVYI 239

Query: 239 RAIHVNPREALIRFGN--------VPIKNIENAIISLNLSKTGKL-------KEAAFNLF 283
               V+P ++ +            V +   +N I S++     ++       + A+ +LF
Sbjct: 240 ----VDPEDSWLDVAKWIESHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLF 295

Query: 284 NYMKIADDSGASSIAFS-SIPNHGLGIAINNRLERAAA 320
             ++  D+     I F+  +   G+  A  NRL ++A 
Sbjct: 296 ADLREFDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAG 333


>gi|323490905|ref|ZP_08096100.1| hypothetical protein GPDM_16096 [Planococcus donghaensis MPA1U2]
 gi|323395385|gb|EGA88236.1| hypothetical protein GPDM_16096 [Planococcus donghaensis MPA1U2]
          Length = 330

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 134/236 (56%), Gaps = 5/236 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++ + N+  +A E L +G  +A PTETVYGL  D+ N  A+ +++E K RPA NPLI HV
Sbjct: 11  NVDEENSYAQAVENLKSGEVVAFPTETVYGLGADATNFEAVSKIFEAKGRPADNPLIVHV 70

Query: 65  SDI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
               S +     V   +L     FWPG LTL++     T  + + TANL+T   RVP   
Sbjct: 71  DKKESALNYVQEVSAKALQCMDAFWPGALTLIMQAKPETFANNV-TANLQTVGIRVPNHP 129

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KL++    PLA PSAN SG+ S T   H+    +   IPLI+DGG ++IG+EST+++
Sbjct: 130 VALKLLQEVKLPLAAPSANTSGKPSPTLASHV-RHDMDGRIPLILDGGATEIGIESTVLD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
             CE  V ILRPG +  E +++ I        ++ + P+SPGM   HYAP + + L
Sbjct: 189 TTCEPPV-ILRPGKITKEQIEQVIGTVRTSSGNKDNVPKSPGMKYMHYAPTAPLYL 243


>gi|319943122|ref|ZP_08017405.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599]
 gi|319743664|gb|EFV96068.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599]
          Length = 348

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 165/353 (46%), Gaps = 51/353 (14%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++TD+  L +A   L AG  I +PTETVYGLA ++ +  A+  +Y IK RPA +PLI HV
Sbjct: 8   TMTDAP-LAEAAAVLQAGGVIGLPTETVYGLAANAADEQAVTSIYRIKGRPADHPLIVHV 66

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV----- 119
           +D    ++ A   P +  LA  FWPGPLTLVL   +     P ++A   T   RV     
Sbjct: 67  ADALAAQQWAEWTPAAQRLADAFWPGPLTLVLRRRAGAP--PFASAGQDTIALRVSSHPV 124

Query: 120 ---------PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
                    P G T          LA PSANR G+IS +   H+  S +   +PL++DGG
Sbjct: 125 FQRLMQALAPVGITG---------LAAPSANRFGRISPSRAAHV-RSGLGSAVPLVLDGG 174

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGML 226
            S++G+ESTIV++     V +LRPGG+ ++ L     + +         E   P+ PG L
Sbjct: 175 PSEVGVESTIVDLSRGAPV-LLRPGGISLQALADCLGQPVRAADSQATREADAPRVPGAL 233

Query: 227 KSHYAPR--------------SQVRLRAIHV--NPREALIRFGNVPIKNIENAIISLNLS 270
            SHYAP                Q R  A+     P    +  G + +   E       L 
Sbjct: 234 PSHYAPSVPLRLLSAGALAALLQQRATALSAAQTPVIDGLPMGRIAVWRPEPPPEQPGLF 293

Query: 271 KTGKLKE---AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              +  E   AA +L++ +   D  G  +I     P      A+ +RL+RAAA
Sbjct: 294 WRCQPTEVALAARHLYDTLHQLDALGVDAILVEQPPAEPAWRAVQDRLQRAAA 346


>gi|150015296|ref|YP_001307550.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149901761|gb|ABR32594.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 343

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 169/335 (50%), Gaps = 27/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +R+A E +  G  +  PTETVYGL  D+ N  A+ ++++ K RP  NPLI HVS  
Sbjct: 8   DEEKIREAAECIKNGGTVVFPTETVYGLGADALNEEAVEKIFKAKGRPQDNPLIIHVSSK 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTK 125
            +      +  ++  L   FWPGPLT++   LS  DI P +++ANL +   R+P     +
Sbjct: 68  KLDLYAKEIPKVADELINRFWPGPLTII---LSKKDIIPNVTSANLNSIGIRMPDNEVAR 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLIE     +A PSAN SG+ S T+ +  +   +  ++  I+ G  S IG+ESTIV+   
Sbjct: 125 KLIELSQTTIAAPSANISGRPSPTDFQRCI-EDLDGKVDYILGGEQSDIGVESTIVDCTV 183

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL-- 238
              + +LRPGG+ +E L+     +E++  +     E   P++PGM   HYAP ++V +  
Sbjct: 184 VPPI-VLRPGGITLEMLREVDPRIEIDKAIMEKPSENLKPKAPGMKYKHYAPNAKVTIIS 242

Query: 239 --RAIHVNPREALIRFG-----NVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNY 285
             R   +     ++ +       V I  +E  +       S+ L     L   A +LF  
Sbjct: 243 GERKKTIEKIREMVHYNIEKGKKVCILTVEENVDEYTEGTSIVLGSLSDLSTVARSLFEA 302

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD GA  +        G+G+AI NRL +AA 
Sbjct: 303 LRKCDDLGADLVFAEGYEEKGVGVAIMNRLNKAAG 337


>gi|259503692|ref|ZP_05746594.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus antri DSM 16041]
 gi|259168324|gb|EEW52819.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus antri DSM 16041]
          Length = 342

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 173/331 (52%), Gaps = 27/331 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ ++M
Sbjct: 9   NQIDEAAAAIRRGELVAFPTETVYGLGADATNEPAVKNVYLAKGRPSDNPLIVHVNSVAM 68

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDL----LSTTDIHPLSTANLKTACFRVPCGF- 123
           V+++A+  P  +  L   FWPG LT++L +    LS T      T  L T  FR P    
Sbjct: 69  VEQYAAEIPEKARKLMAAFWPGSLTIILKIKRGALSKT-----VTGGLSTVAFRFPDNQP 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++
Sbjct: 124 TLDLIGKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKITGILDDGPTRVGVESTVLDM 182

Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
             E  V ILRPG +  + ++  I S++L  + V +  TP++PGM   HYAP +QV +   
Sbjct: 183 STETPV-ILRPGAVTKQDIEGVIGSIDLNHHQVGKNETPKAPGMKYKHYAPSAQVYIVDD 241

Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                   R I   P +  +      ++ +   + ++  S    + +A+  LF+ ++  D
Sbjct: 242 GTDWSTVVRWIAQQPFDVGVMAEEQILQQLTLPMNAVQFSLGTGVADASARLFDGLRGFD 301

Query: 291 DS-GASSIAFSSIPNHGLGIAINNRLERAAA 320
           D     +I   + P   LG A  NRL ++A 
Sbjct: 302 DQPNVKAIVTEAFPAKNLGRAYMNRLNKSAG 332


>gi|309791839|ref|ZP_07686326.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6]
 gi|308226161|gb|EFO79902.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6]
          Length = 347

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 132/234 (56%), Gaps = 7/234 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  +++A   L  G  +A PTETVYGL  D+ NPTA+ R++  K RPA +PLI H++D+
Sbjct: 13  NTATIQEAATILATGGLVAFPTETVYGLGADALNPTAVGRIFAAKGRPAEDPLIVHLADL 72

Query: 68  S-MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S + +      P+  HLA   WPGPLTLVL            TA L+T   RVP     +
Sbjct: 73  SDLARVTPHCPPVVAHLAAHCWPGPLTLVLPRGPAVPYR--VTAGLETVAVRVPAHPVAR 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSANR G  S T   H+L + +   I +++DGG + +G+EST++++  
Sbjct: 131 ALIAAAGTPIAAPSANRFGHTSPTTAAHVL-ADLDGRIEMVLDGGPATLGVESTVLDLSA 189

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
                +LRPGG+ +ETL+  +  V L      T    +PG+L  HYAP + + L
Sbjct: 190 PIPT-LLRPGGVSLETLRDLLGEVALGGRAAPTGGQIAPGLLDRHYAPDNALHL 242


>gi|291526379|emb|CBK91966.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium rectale DSM 17629]
          Length = 502

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 165/336 (49%), Gaps = 28/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + + AG  +A PTETVYGL  D+ +P A +++Y  K RP+ NPLI H+SD 
Sbjct: 14  DHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSDNPLIVHISDF 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
           S +++ A   P     L+  FWPGPLT++++     D  P  +T  + T   R+P     
Sbjct: 74  SDLERIAKTVPEDARKLSDAFWPGPLTMIVE---KGDAVPYATTGGMDTVAVRMPNHPIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G  +A PSAN SG+ S T   H+ +  +  +I +IIDGG   IG+ESTI+++ 
Sbjct: 131 LDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIGIESTIIDL- 188

Query: 185 CEKKVRILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQV--- 236
            E    +LRPG +  + L + +  E+         D+T  P++PGM   HYAP++ +   
Sbjct: 189 TEDTPMVLRPGYITPQMLSKVLGKEVVIDPGIIAADDTRKPKAPGMKYKHYAPKADMVIV 248

Query: 237 ------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                        L A H +  + +        K   +A + L++         A  L+ 
Sbjct: 249 DGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADEDSIAHELYR 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+     I   S     +G AI NR+ +AA 
Sbjct: 309 ILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAG 344


>gi|300855871|ref|YP_003780855.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
 gi|300435986|gb|ADK15753.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
          Length = 349

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 177/346 (51%), Gaps = 38/346 (10%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++ + D NA    + K  E+L  G  +AIPTETVYGLA D+ N  A+++++++K RP  
Sbjct: 9   EVLYVKDLNANYQNIVKGAEYLKKGEVVAIPTETVYGLAADAFNENAVKKIFKVKGRPQD 68

Query: 58  NPLICHVSDISMVK---KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTAN 111
           NPL+ H+  +  V    K    D   +  A  FWPG +TL+    D +S T      +A 
Sbjct: 69  NPLLVHIYKLEQVYDICKDIHKDAEKVFDA--FWPGSVTLIFNKKDCISDT-----VSAG 121

Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           +KT   R P     + +I+  G  L  PSAN SG+ S T+ +H   + +  +IP I+DGG
Sbjct: 122 MKTVGVRFPKSEVARAIIKESGTLLVAPSANLSGKPSTTSAEHCY-NDLNGKIPCILDGG 180

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY-----CVDETSTPQSPGM 225
              IGLESTI+++     V +LRPG + ++ +++ I   L Y      V     P++PGM
Sbjct: 181 PCSIGLESTIIDMSTPDPV-LLRPGAISLDDIRKVIP-NLVYKKNLLSVKGNEIPKAPGM 238

Query: 226 LKSHYAPRSQVRL---------RAIHVNPRE--ALIRFGNVPIKNIENAIISLNLSKTGK 274
              HYAP + V L         + I  N  E  A+I F    +K+ +N     +L     
Sbjct: 239 KYRHYAPDAPVTLVKGDYAKTSKWIKENANEENAVICFQEF-LKDFKNYEHVYSLGSFKT 297

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L  AA   F+ ++  D    S I   +  + GLG +I NRLE+A+A
Sbjct: 298 LNAAAQKTFDLLRECDKLNISHIYVQAPKDSGLGNSIINRLEKASA 343


>gi|255525830|ref|ZP_05392759.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium carboxidivorans P7]
 gi|255510473|gb|EET86784.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium carboxidivorans P7]
          Length = 350

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 177/342 (51%), Gaps = 40/342 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A   +  G  +A PTETVYGL  ++ NP+A+++++E K RP  NP+I H++D 
Sbjct: 14  DRDIIIEAANVIKEGGLVAFPTETVYGLGGNALNPSAVKKIFEAKGRPQDNPVIAHIADF 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124
             +       P ++  L + FWPGP+TL+   L  ++I P ++TA LK    R+P     
Sbjct: 74  KEINALVKEIPEVAKKLMEKFWPGPMTLI---LQKSEIVPDVTTAGLKCVGIRMPSNIIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++ I   G P+A PSAN SG+ S T+V+  +     K I  II G +  IG+EST+++  
Sbjct: 131 REFIRACGVPIAAPSANISGRPSPTDVERCIEDMDGK-IDYIIGGEMCDIGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPRSQV 236
            +  V ILRPGG+ +E LK    V+ +  +D        +   P++PGM   HYAP++ V
Sbjct: 190 VQ-PVCILRPGGITLEMLKE---VDKDAYIDPAIMKKPDKDFKPKAPGMKYKHYAPKAHV 245

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA------------------ 278
           ++ A  +    A I   N  ++N      S+ +  T + K+                   
Sbjct: 246 KIVAGDLQKTIAKI---NEIVQNYIGENKSVGIMATDETKKYYKNGIVVSLGSREDMISI 302

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           + NLF  ++  DD G   I   +    G+G+AI NRL+++A 
Sbjct: 303 SKNLFETLRSFDDKGVDVIVSEAFEEIGVGVAIMNRLQKSAG 344


>gi|169824779|ref|YP_001692390.1| translation factor [Finegoldia magna ATCC 29328]
 gi|167831584|dbj|BAG08500.1| translation factor [Finegoldia magna ATCC 29328]
          Length = 342

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L KA E +  G  +A PTETVYGL  +  +  A ++++++K+R   NPLI HV++  MV
Sbjct: 16  SLEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDMV 75

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           K  +S +      L    WPGPLT++     +  ++ + +    T   R P     + LI
Sbjct: 76  KNLSSEITEDQKKLMDNLWPGPLTIIFK--KSDKVNDVVSCGGDTVAIRNPSDEIARFLI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+A PSAN+SG+ S TN + +  S +  EI +I+DGG   IG+EST+V++  EK 
Sbjct: 134 DKSGCPIAAPSANKSGRPSPTNAQDVY-SDMQGEIEMILDGGSCNIGIESTVVDL-TEKP 191

Query: 189 VRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             ILRPG    E L+  +  E+ Y    +D  + P+SPG    HYAP++  +L  I  N 
Sbjct: 192 YTILRPGFYTKEDLEEYLD-EVVYDKSLIDSNTIPKSPGQKYKHYAPKT--KLIVIKGNM 248

Query: 246 REALIRFGNVPIK----------------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                   N+ I                 N EN  I   +SK       A N+F Y++  
Sbjct: 249 DNIQNYVDNLGINTDEIGFILTEETAENVNFENVKI---ISKRNDYLNFAHNIFTYLREL 305

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D      +    +    +GI+I NRL+++ A
Sbjct: 306 DKFNYKLLICEGVNEQKMGISIMNRLKKSCA 336


>gi|307611858|emb|CBX01573.1| hypothetical protein LPW_32601 [Legionella pneumophila 130b]
          Length = 322

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 20/332 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  +N L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PLI H
Sbjct: 1   MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVH 59

Query: 64  V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + S+  +      V   +  LA  FWPGPLTLV        I+PL T    T   R P  
Sbjct: 60  IASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVFH-CKKDQINPLITGGQSTIAIRCPDH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+KL++    P+  PSAN  G+IS T   H+  S    E+  I+DGG  ++G+ESTIV
Sbjct: 119 PLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +       +ILR G ++ +T+   I++    C  + +  + PG L SHY P+  +     
Sbjct: 178 DATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTL----Y 230

Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293
           + +  E L  F     G V  I N +   +  NL     +  +++A++L+  +++AD S 
Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           A  IA    PN      +  R+ +A  P +Q 
Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|317130767|ref|YP_004097049.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315475715|gb|ADU32318.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 350

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 160/311 (51%), Gaps = 19/311 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  ++ +  AI R+++ K RP+ NPLI H+S+   ++ +    P S   L
Sbjct: 37  VAFPTETVYGLGGNALSDQAIERIFKAKGRPSDNPLIVHISNKKQLQHYVKHIPNSARKL 96

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLT+VL+      +    TA L T   R+P       LIE    PLA PSAN 
Sbjct: 97  IDAFWPGPLTIVLE--HNKKLSTRVTAQLSTVAVRMPDHPVALALIEAANVPLAAPSANT 154

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ S T   H+    +  +I  IIDGG + +G+EST+V+   E  V +LRPGG+  E L
Sbjct: 155 SGKPSPTTADHV-RKDLAGKISTIIDGGTTGVGVESTVVDCTSE-TVMLLRPGGISKEAL 212

Query: 203 KRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRL--------RAI---HVNPREAL 249
           +  +  VE++   V    TP+SPGM  +HYAP + ++L        R I    +N  + +
Sbjct: 213 EEIVGVVEVDPALVAADHTPKSPGMKYTHYAPDAPLQLIDGSTDFFRKIVEDAINNGKKV 272

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
                   K +  A   + L K   L   A  L++ ++  D +    I     P  GLG 
Sbjct: 273 GVLVTEENKGLTRANQEVILGKRSDLSTVAQTLYSSLRSFDKNVVDIIFTEVFPETGLGS 332

Query: 310 AINNRLERAAA 320
           AI NRL++AA 
Sbjct: 333 AIMNRLKKAAG 343


>gi|291526824|emb|CBK92410.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium rectale M104/1]
          Length = 502

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 165/336 (49%), Gaps = 28/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + + AG  +A PTETVYGL  D+ +P A +++Y  K RP+ NPLI H+SD 
Sbjct: 14  DHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSDNPLIVHISDF 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
           S +++ A   P     L+  FWPGPLT++++     D  P  +T  + T   R+P     
Sbjct: 74  SDLERIAKTVPEDARKLSDAFWPGPLTMIVE---KGDAVPYATTGGMDTVAVRMPNHPIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G  +A PSAN SG+ S T   H+ +  +  +I +IIDGG   IG+ESTI+++ 
Sbjct: 131 LDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIGIESTIIDL- 188

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQV--- 236
            E    +LRPG +  + L + +  E+         D+T  P++PGM   HYAP++ +   
Sbjct: 189 TEDTPMVLRPGYITPQMLSKVLGKEVIIDPGIIAADDTRKPKAPGMKYKHYAPKADMVIV 248

Query: 237 ------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                        L A H +  + +        K   +A + L++         A  L+ 
Sbjct: 249 DGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADEDSIAHELYR 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+     I   S     +G AI NR+ +AA 
Sbjct: 309 ILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAG 344


>gi|148361313|ref|YP_001252520.1| SUA5/yciO/yrdC family transporter:Sua5/YciO/YrdC/YwlC family
           transporter protein [Legionella pneumophila str. Corby]
 gi|296108653|ref|YP_003620354.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
 gi|148283086|gb|ABQ57174.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Legionella pneumophila str. Corby]
 gi|295650555|gb|ADG26402.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
          Length = 322

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 20/332 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  +N L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PLI H
Sbjct: 1   MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVH 59

Query: 64  V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + S+  +      V   +  LA  FWPGPLTLV        I+PL T    T   R P  
Sbjct: 60  IASNWDLHDLVEEVPEYAHQLAGKFWPGPLTLVFH-CKKDQINPLITGGQSTIAIRCPDH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+KL++    P+  PSAN  G+IS T   H+  S    E+  I+DGG  ++G+ESTIV
Sbjct: 119 PLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +       +ILR G ++ +T+   I++    C  + +  + PG L SHY P+  +     
Sbjct: 178 DATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTL----Y 230

Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293
           + +  E L  F     G V  I N +   +  NL     +  +++A++L+  +++AD S 
Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           A  IA    PN      +  R+ +A  P +Q 
Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|295094170|emb|CBK83261.1| Sua5/YciO/YrdC/YwlC family protein [Coprococcus sp. ART55/1]
          Length = 350

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 175/349 (50%), Gaps = 42/349 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            + D     +A E L  G  +A PTETVYGL  D+ NP A  R+Y  K RP+ NPLI H+
Sbjct: 9   GVDDDRMYEQAAEILKRGGLVAFPTETVYGLGGDALNPDASHRIYAAKGRPSDNPLIVHI 68

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG 122
           ++ S V + A +V   +  L + FWPGPLT++L+     ++ P  +T  L T   R+P  
Sbjct: 69  AETSSVYELAETVSDDTKKLMEAFWPGPLTIILN---KKEVVPHTTTGGLDTVAIRMPSH 125

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI+  G  +A PSAN SG+ S T  +H+    +   I +IIDGG   IG+ESTIV
Sbjct: 126 PVAMRLIKDSGVYIAAPSANLSGRPSPTTAQHV-QQDMDGRIDMIIDGGAVGIGIESTIV 184

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-------PQSPGMLKSHYAPRS 234
           ++  ++   ILRPG +  E ++  +    +  +D   T       P++PGM  +HYAP+ 
Sbjct: 185 DMTGDRPT-ILRPGYITPEMIRDIVG---DVTIDPAITGMNNALRPKAPGMKYTHYAPKG 240

Query: 235 QV------RLRAIH-----VNPREA-------LIRFGNVPIKNIENAIISLNLSKTGKLK 276
           ++      RL A       V  ++A       L    NV   ++ +  +  N+   G  K
Sbjct: 241 ELSIVEGDRLAAAEKIRSLVAEKKAQGYKTAILCDTDNV---SLYDDGVCENVYDAGSKK 297

Query: 277 E---AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                +  L++ ++  DD GA  I   S     +G AI NRL +AA  R
Sbjct: 298 NEITVSAGLYSLLRTCDDIGAQYIYSESFEEGDMGYAIMNRLIKAAGHR 346


>gi|54295812|ref|YP_128227.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens]
 gi|53755644|emb|CAH17146.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens]
          Length = 322

 Score =  149 bits (376), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 168/332 (50%), Gaps = 20/332 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  +N L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PLI H
Sbjct: 1   MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVH 59

Query: 64  V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + S+  +      V   +  LA  FWPGPLTLV        I+PL T    T   R P  
Sbjct: 60  IASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVFH-CKKDQINPLITGGQSTIAIRCPDH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+KL++    P+  PSAN  G+IS T   H+  S    E+  I+DGG  ++G+ESTIV
Sbjct: 119 PLTQKLLQKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +       +ILR G ++ +T+   +++    C  + +  + PG L SHY P+  +     
Sbjct: 178 DATNPDSYQILRHGIIDEKTIAETVAIG---CSTQKNDIRVPGKLDSHYQPQKTL----Y 230

Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293
           + +  E L  F     G V  I N +   +  NL     +  +++A++L+  +++AD S 
Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           A  IA    PN      +  R+ +A  P +Q 
Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|238922539|ref|YP_002936052.1| putative translation factor (SUA5) [Eubacterium rectale ATCC 33656]
 gi|238874211|gb|ACR73918.1| putative translation factor (SUA5) [Eubacterium rectale ATCC 33656]
          Length = 502

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 165/336 (49%), Gaps = 28/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + + AG  +A PTETVYGL  D+ +P A +++Y  K RP+ NPLI H+SD 
Sbjct: 14  DHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSDNPLIVHISDF 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
           S +++ A   P     L+  FWPGPLT++++     D  P  +T  + T   R+P     
Sbjct: 74  SDLERIAKTVPEDARKLSDAFWPGPLTMIVE---KGDAVPYATTGGMDTVAVRMPNHPIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G  +A PSAN SG+ S T   H+ +  +  +I +IIDGG   IG+ESTI+++ 
Sbjct: 131 LDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIGIESTIIDL- 188

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQV--- 236
            E    +LRPG +  + L + +  E+         D+T  P++PGM   HYAP++ +   
Sbjct: 189 TEDTPMVLRPGYITPQMLSKVLGKEVIIDPGIIAADDTRKPKAPGMKYKHYAPKADMVIV 248

Query: 237 ------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                        L A H +  + +        K   +A + L++         A  L+ 
Sbjct: 249 DGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADEDSIAHELYR 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+     I   S     +G AI NR+ +AA 
Sbjct: 309 ILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAG 344


>gi|260424635|ref|ZP_05732759.2| Sua5/YciO/YrdC/YwlC family protein [Dialister invisus DSM 15470]
 gi|260402640|gb|EEW96187.1| Sua5/YciO/YrdC/YwlC family protein [Dialister invisus DSM 15470]
          Length = 350

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 171/329 (51%), Gaps = 22/329 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ +++  E + AG  +A PTETVYGL  ++ +  A +++Y  K RP+ NPLI HV+DIS
Sbjct: 20  NDKVKRLGEVIRAGGLVAFPTETVYGLGGNALDKEAAKKIYMAKGRPSDNPLIVHVADIS 79

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPC-GFTK 125
            V  +   + PL   L + FWPGPLT+V       DI P++T+  L+T   R P     +
Sbjct: 80  EVSTYVKRILPLEKRLMEAFWPGPLTIV---FPKKDIVPMATSGGLRTIAIRCPAHEAAR 136

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN S + S T    +L   +   I  +IDGG S IGLEST++ V+ 
Sbjct: 137 ALIRAAGVPIAGPSANISTKPSPTTADAVL-HDMDGRIEFVIDGGDSLIGLESTVIAVE- 194

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
             K+ I RPGG+  + L+     EL+  +  E   P++PGM   HYAP + + + A ++ 
Sbjct: 195 NGKIIIYRPGGITRDMLEAFAPTELDTAITAEQEHPKAPGMKYRHYAPSAPLTVYAGNIE 254

Query: 245 PREALI---------RFGNVPIKNIENAIISLNL----SKTGKLKEAAFNLFNYMKIADD 291
             E+ I         +FG    +     I + N+     + G  KE A NLF  +   ++
Sbjct: 255 AVESEILSFANKGKGKFGFFVSQETAEKIPAGNIIFVWGRRGNKKELAHNLFQGLLFFNN 314

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                I        G+G+AI NRL +A+ 
Sbjct: 315 HPVDHIIGEGTDGGGIGMAIMNRLTKASG 343


>gi|298242303|ref|ZP_06966110.1| Sua5/YciO/YrdC/YwlC family protein [Ktedonobacter racemifer DSM
           44963]
 gi|297555357|gb|EFH89221.1| Sua5/YciO/YrdC/YwlC family protein [Ktedonobacter racemifer DSM
           44963]
          Length = 359

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 166/345 (48%), Gaps = 44/345 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV--- 64
           + + L  A   L AG  +  PTETVYGL   +  P A+ +++  K+RP  +PLI H+   
Sbjct: 17  EEHVLAHAVTLLRAGELVVFPTETVYGLGAAALQPAAVEKIFAAKERPYSDPLIVHIASE 76

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVP 120
           +DI  + +  S    +  + + FWPGPLTLVL        HP    L T+ L T   R+P
Sbjct: 77  ADIEHLVRDISEQ--ARQVMRHFWPGPLTLVL------PAHPRVPRLVTSGLDTVAIRMP 128

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI   G P+A PSANR   +S T  +H+  + +   +PLI+DGG S +G+EST
Sbjct: 129 SHPVALGLIRALGAPVAAPSANRFMHVSPTTAQHV-EADLKGRVPLILDGGASTVGVEST 187

Query: 180 IVNVQCEKKVRILRPGGLEIETLK---------RAISVELEYCVDETSTPQSPGMLKSHY 230
           I+++  E    ILRPGG+ +E L+         RA S+       E    +SPG +  HY
Sbjct: 188 ILDMSSELPT-ILRPGGVSLEALRVLLPQVQPPRARSLANPDLAHEVEAQKSPGQMLIHY 246

Query: 231 APR--------SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL------- 275
           APR        + + +R   +   + L R G      I +  ++   S    +       
Sbjct: 247 APRVPAFLFEGASMSMRHAMLLELQRLQRQGKTVGVLIADEDVAYFQSSGASMYVLGSEE 306

Query: 276 --KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
              + A  LF  ++  +D+G   I   + P  GLG+AI +RL +A
Sbjct: 307 DSTKVASRLFAGLRTLEDAGVDVILCRAFPETGLGLAIRDRLLKA 351


>gi|54298977|ref|YP_125346.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris]
 gi|53752762|emb|CAH14197.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris]
          Length = 322

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 168/332 (50%), Gaps = 20/332 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  +N L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PLI H
Sbjct: 1   MSIITTN-LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPLIVH 59

Query: 64  V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + S+  +      V   +  LA  FWPGPLTLV        I+PL T    T   R P  
Sbjct: 60  IASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVFH-CKKDQINPLITGGQSTIAIRCPDH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+KL++    P+  PSAN  G+IS T   H+  S    E+  I+DGG  ++G+ESTIV
Sbjct: 119 PLTQKLLKKLNIPVVAPSANPFGKISPTTALHVKQSFNDAEL-TILDGGRCRVGIESTIV 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +       +ILR G ++ +T+   I++    C  + +  + PG L SHY P+  +     
Sbjct: 178 DATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTL----Y 230

Query: 242 HVNPREALIRF-----GNVP-IKNIENAIISLNLSKTGKL--KEAAFNLFNYMKIADDSG 293
           + +  E L  F     G V  I N +   +  NL     +  +++A++L+  +++AD S 
Sbjct: 231 YFDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSD 290

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           A  IA    PN      +  R+ +A  P +Q 
Sbjct: 291 AICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|241895236|ref|ZP_04782532.1| SUA5 family translation factor [Weissella paramesenteroides ATCC
           33313]
 gi|241871542|gb|EER75293.1| SUA5 family translation factor [Weissella paramesenteroides ATCC
           33313]
          Length = 342

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 172/339 (50%), Gaps = 31/339 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I ++ + +A  +A +    G  +A PTETVYGL  D+ N  A+ ++Y  K RP+ NPLI
Sbjct: 5   KIWTVDEMDAAARAIK---RGSLVAFPTETVYGLGADAYNEKAVGKVYAAKGRPSDNPLI 61

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACF 117
            HV+D   V   A V+  +  L   +WPGPLT++L    D+LS T      T  L T   
Sbjct: 62  VHVADPEQVADFAIVNERAQKLMAAYWPGPLTMILPVKPDVLSMT-----VTGGLDTVAV 116

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P    T++LI   G PL  PSAN SG+ S T  KH+    +  +I  I+D G +KIG+
Sbjct: 117 RLPDNAATRQLIRESGKPLVGPSANTSGKPSPTLAKHVY-HDLHGKIAGILDDGPTKIGV 175

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPR 233
           EST++++  +    +LRPG +    ++  I V ++   + V +  TP++PGM   HYAP 
Sbjct: 176 ESTVLDLSTDMPA-VLRPGKITPAQIESVIGVPVDSEIHRVADNETPKAPGMKYRHYAPD 234

Query: 234 SQVRLRAIHVNPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
             V + A   +  +A+I              N  IK  + A +    S       AA  L
Sbjct: 235 KAVYMVAPE-DWTQAIIWMQSQVEPVGLMLTNDLIKKHQLAGMDFIWSLGDNNDTAAAKL 293

Query: 283 FNYMKIADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  DD     +I  +++P   +  A NNRL +A+ 
Sbjct: 294 FAGLRYFDDKKDVQTILVAAMPQVDVNGAYNNRLGKASG 332


>gi|15896136|ref|NP_349485.1| translation factor (SUA5) [Clostridium acetobutylicum ATCC 824]
 gi|15025929|gb|AAK80825.1|AE007785_10 Predicted translation factor (SUA5) [Clostridium acetobutylicum
           ATCC 824]
 gi|325510290|gb|ADZ21926.1| translation factor (SUA5) [Clostridium acetobutylicum EA 2018]
          Length = 350

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 172/340 (50%), Gaps = 36/340 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A EF+  G  +  PTETVYGL  ++ +  A ++++E K RP  NPLI H+SD 
Sbjct: 14  DEQILKEAGEFIKNGKLVVFPTETVYGLGANAEDGEATKKIFEAKGRPQDNPLIIHISDF 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V K   ++   +  L + FWPGP+TL+++  S   I  +++A L +   R+P     +
Sbjct: 74  EDVDKVVRNISDSARKLMREFWPGPMTLIMEKKSI--ISDVTSAGLTSVGVRMPSDKIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI+  G  +A PSAN SG+ S T+V+  +   +  ++  II G   + GLEST+++   
Sbjct: 132 KLIKFSGVSIAAPSANLSGKPSPTDVERCI-EDLNGKVDYIIGGNKCEYGLESTVIDCTV 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-------ETS-TPQSPGMLKSHYAPRSQVR 237
              V ILRPG + +E +++   V+ +  +D       E S  P++PGM   HYAP++ V+
Sbjct: 191 -NPVCILRPGAITLEMVRK---VDEKAYIDPAIMAKPEPSLKPKAPGMKYKHYAPKAPVK 246

Query: 238 L-----------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280
           +                   I  N +  ++        N  NAI+ ++L     +     
Sbjct: 247 IIDGDLKKTIEKINEMVQNYIDDNKKVGIMATDETK-NNYRNAIV-ISLGSRKDIYSIGR 304

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           NLF  ++  DD G   I   +    G G+AI NRL ++A 
Sbjct: 305 NLFETLRDFDDCGVDVILSEAFDEEGFGVAIMNRLNKSAG 344


>gi|297623264|ref|YP_003704698.1| Sua5/YciO/YrdC/YwlC family protein [Truepera radiovictrix DSM
           17093]
 gi|297164444|gb|ADI14155.1| Sua5/YciO/YrdC/YwlC family protein [Truepera radiovictrix DSM
           17093]
          Length = 356

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/247 (39%), Positives = 136/247 (55%), Gaps = 28/247 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A E L  G  +A PTETVYGL  D+RN  A+R ++ IK RPA +P+I H+   + ++
Sbjct: 12  LTEAAEALRQGRLVAFPTETVYGLGADARNEAAVREIFRIKGRPADHPVIVHLPSAAHLE 71

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPC-GFTK 125
             A +V  L+  LA+ FWPGPLTLVL        HP      T    T   RVP      
Sbjct: 72  AWAVAVPELAYALAERFWPGPLTLVLQR------HPSVLDAVTGAQATVGLRVPGHPVAL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-- 183
            L++ +G  +A PSANR G+IS T  +H+ +     +  L++DGG   +GLESTI++V  
Sbjct: 126 ALLDAFGGGVAAPSANRFGRISPTTAEHVRAE--LGDAVLVLDGGPCAVGLESTILDVSR 183

Query: 184 --QCEKKVRILRPGGLEIETLK---RAISVELEYCVDETS-------TPQSPGMLKSHYA 231
               E   R+LRPGG+ +  L+   RA+ +E+E  V   +       TP+  G L SHYA
Sbjct: 184 VGDAEGAPRLLRPGGIALGALQEVARALGLEIEDAVQPGAGTRRGAPTPRVSGSLASHYA 243

Query: 232 PRSQVRL 238
           P +  RL
Sbjct: 244 PATPARL 250


>gi|153956296|ref|YP_001397061.1| hypothetical protein CKL_3705 [Clostridium kluyveri DSM 555]
 gi|219856613|ref|YP_002473735.1| hypothetical protein CKR_3270 [Clostridium kluyveri NBRC 12016]
 gi|146349154|gb|EDK35690.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570337|dbj|BAH08321.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 350

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 180/341 (52%), Gaps = 38/341 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A E +  G  +A PTETVYGL  ++ +P A+ ++++ K RP  NPLI H+++I
Sbjct: 14  DIEIIKEAGEIIRNGGLVAFPTETVYGLGANALDPEAVEKIFKAKGRPQDNPLIVHIAEI 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +K  A  + P++L   + FWPGP+T++L    ++ +  +++A+L +   R+P     +
Sbjct: 74  EDMKPLAIDISPVALKFIQNFWPGPMTVILP--KSSIVPDITSASLDSVGIRMPSNVIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI+    P+A PSAN SG+ S T+V   +   +  ++ LI+ G +  +G+EST+++   
Sbjct: 132 ELIKAAKVPIAAPSANVSGKPSPTDVDRCI-EDLNGKVDLILGGSMCDVGVESTVIDCTV 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPRSQVR 237
                ILRPGG+ +E L+    +E E  +D          + P+SPGM   HYAP + V+
Sbjct: 191 SPSC-ILRPGGITLEMLRE---IEKEVYIDPAIMKKAEGNNRPKSPGMKYRHYAPNAPVK 246

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE------------------AA 279
           +   ++N   A I   N  ++N  +   ++ +  T + +E                   +
Sbjct: 247 IVKGNLNKTIAKI---NEMVENYISENKAVGIIATDETREFYKNALVISVGSRHNMLSVS 303

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  ++  DDS    I   +    G+G+AI NRL ++A 
Sbjct: 304 KNLFETLRSFDDSKVDIIISEAFEEKGIGLAIMNRLNKSAG 344


>gi|118444234|ref|YP_879011.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium novyi NT]
 gi|118134690|gb|ABK61734.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium novyi NT]
          Length = 350

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 168/335 (50%), Gaps = 27/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++  E + +G  +A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DEKVMKETGEIIRSGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVHIADF 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
           +M      +  ++  +   FWPGPLTL++    +  I  +++A L +   R+P     ++
Sbjct: 74  NMDDLVKDIPAIAKKIMDKFWPGPLTLIMK--KSDKIPDVTSAGLDSIGIRMPSSIVARE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ S TN++  +   +  ++  II G    +GLESTIV+   E
Sbjct: 132 LIKKAGVPIAAPSANISGKPSPTNIERCI-EDLDGKVEAIIGGEKCDVGLESTIVDCTVE 190

Query: 187 KKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
               ILRPGG+ +E L+       I   +    D+   P++PGM   HYAP++ V++ A 
Sbjct: 191 PPC-ILRPGGITLEMLREIEPNIYIDPAIMKKADKNLKPKAPGMKYRHYAPKAPVKIVAG 249

Query: 242 HVNPR--------EALIRFGNV--------PIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           ++           +  I  G V           N  NAI+  +L     L   A NLF  
Sbjct: 250 NLEKSIAKINEMVQNYIDDGKVVGIMSTDEHKDNYSNAIVK-SLGSRKDLNSVAHNLFKT 308

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +   D      I   +     +GIAI NRL++AA 
Sbjct: 309 LSEFDSEKVDIIISEAFEEEEIGIAIMNRLKKAAG 343


>gi|255731390|ref|XP_002550619.1| protein SUA5 [Candida tropicalis MYA-3404]
 gi|240131628|gb|EER31187.1| protein SUA5 [Candida tropicalis MYA-3404]
          Length = 385

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 168/347 (48%), Gaps = 36/347 (10%)

Query: 5   SITDSNALRK----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD   L      A E       I  PTETVYGLA  S    ++R +Y  K RPA NPL
Sbjct: 37  TITDEETLNNLQTAAKELTTTNNAIGFPTETVYGLAGSSLKDESVRSIYRAKNRPADNPL 96

Query: 61  ICHVSDISMVKK----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I H+S I  +K+       +  +   L + FWPGPLT++L +     I  L TAN  T  
Sbjct: 97  ITHISSIDQLKRKLINQEEIPSIYNKLIEKFWPGPLTILLPISKNCPISKLVTANQDTFA 156

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI     P+A PSAN S + S T  +H+  + +  +IP+I+DGG   +G
Sbjct: 157 VRMPNHPVARALISISDTPIAAPSANASTRPSPTLAEHVY-NDLNGKIPIILDGGACDVG 215

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP------QSPGMLKSH 229
           +EST+++   +  + +LRPGG+ +E +K+    E E  +    T       ++PGM   H
Sbjct: 216 VESTVIDGLVDPPM-LLRPGGVSLEEIKKYGGKEWENVIIAKKTAGKLEPVKTPGMKYRH 274

Query: 230 YAPRSQVRLRAIHVNPREALIRF---GNVPIKN-------------IENAIISLNLSKTG 273
           Y+P ++V L     + +EA++ +    N+   N             +E   I   L K G
Sbjct: 275 YSPTAKVILFVNCGDGKEAILNYLKQNNIDCNNTKIALLKSCNFVDVEGVAIIKELGKNG 334

Query: 274 KLKEAAFNLFNYMKIADDSGASS-IAFSSIPNHGLGIAINNRLERAA 319
              E + NLF Y++  D+      I    I     G+A+ NRL +AA
Sbjct: 335 --HEISHNLFKYLREVDEEDKVDLILVEGIDETNEGLAVMNRLSKAA 379


>gi|225175847|ref|ZP_03729840.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT
           1]
 gi|225168771|gb|EEG77572.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT
           1]
          Length = 355

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 173/333 (51%), Gaps = 32/333 (9%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  +A PTETVYGL  ++ N  A+ +++  K RP+ NPLI HV     +++ 
Sbjct: 26  QAGRILAGGGLVAFPTETVYGLGANALNGPAVEKIFNAKGRPSDNPLIVHVDRADKIREL 85

Query: 74  A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIET 130
           A ++ P +  LAK FWPGPLTLV   L   +I P   +  LKT   R+P       L++T
Sbjct: 86  AQNIPPEAWCLAKHFWPGPLTLV---LPKQEIVPREVSGGLKTVAVRIPDHPVALALLKT 142

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+A PSAN SG+ S T   H+L   +   I  ++DGG   +G+EST+++++  + V 
Sbjct: 143 AGVPVAAPSANLSGRPSPTTAGHVL-DDLDGRIDAVVDGGPCGVGVESTVLSIENGQPV- 200

Query: 191 ILRPGGLEIETLKR------AISVELEYCVDETSTPQSPGMLKSHYAPRSQV-------- 236
           +LRPGG+  E + +      A++   E   D    P SPG+  +HYAP++ +        
Sbjct: 201 VLRPGGVTPEQITQVLGKVCAVAAWQEQSGD---APPSPGLKYTHYAPQAPMYLLLGKPE 257

Query: 237 ----RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK---EAAFNLFNYMKIA 289
               +++A+         + G +  + + N + +  +   G+     E A NL++ ++  
Sbjct: 258 AVAEKMQAMRDEFWAQSQKVGLLLSRELSNRVTADAVEVLGERDRPVELAANLYSALRRL 317

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D++    I      + G+G A+ NR+ +AA PR
Sbjct: 318 DETDCDVILAEGYNDEGMGFALMNRMAKAAGPR 350


>gi|160935044|ref|ZP_02082430.1| hypothetical protein CLOLEP_03920 [Clostridium leptum DSM 753]
 gi|156866497|gb|EDO59869.1| hypothetical protein CLOLEP_03920 [Clostridium leptum DSM 753]
          Length = 335

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 179/347 (51%), Gaps = 48/347 (13%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M   D   +R+A E +  G  + IPTETVYGLA ++ N +  R+++  K RP+ NPLI H
Sbjct: 1   MLQADDKGIRRAAEIIQQGGLVGIPTETVYGLAGNALNGSVSRKIFAAKGRPSDNPLIVH 60

Query: 64  VSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPC 121
           ++     +      P  +  LA  +WPGPLT+V   L  +++ P+ T+  L T   R+P 
Sbjct: 61  IAAEEEARPLVKEFPEPARKLAAAYWPGPLTMV---LPKSELVPMETSGGLSTVAVRLPA 117

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +LI   G PLA PS N SG+ S T  +H+L   +   I  I+DGG   +G+EST+
Sbjct: 118 HPVANRLIRACGCPLAAPSGNLSGRPSPTTARHML-HDMDGRIDAILDGGPCGVGVESTV 176

Query: 181 VNVQCEKKVRILRPGGLEIETLKR---AISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235
           + +  E+K R+LRPGG+ +E L+R   A++V+  + + + + +   SPGM   HYAP+++
Sbjct: 177 LAL-AEQKPRLLRPGGVTLEMLQRVVGAVTVDPAVLHKLADGAQAASPGMKYKHYAPKAK 235

Query: 236 V--------RLRAIHVNPREA-------------LIRFGNVPIKNIENAIISLNLSKTGK 274
           V        R R   VN ++A             L++  +VP  +  ++           
Sbjct: 236 VILVKGTAERYREF-VNSKKAPGVGALCFDEDQHLLKVPSVPYGSGNDSAAQ-------- 286

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAAA 320
               A  LF+ ++  D+     + ++  P   G+G+A+ NRL RAA 
Sbjct: 287 ----ARELFDALRELDERQEIQLVYARCPEPEGVGMAVYNRLIRAAG 329


>gi|323491653|ref|ZP_08096832.1| putative translation factor [Vibrio brasiliensis LMG 20546]
 gi|323314229|gb|EGA67314.1| putative translation factor [Vibrio brasiliensis LMG 20546]
          Length = 320

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 170/335 (50%), Gaps = 40/335 (11%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q +S +D   +  A + L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI
Sbjct: 4   QHLSASDKQDIELAKQILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLI 63

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+ ++  +   A   P   + +A  FWPGP+TL+L+        P+ T  L T   R+P
Sbjct: 64  VHIGNVEQLSDWARDIPQQAYTIADAFWPGPVTLLLN--KAPQATPVVTGGLDTIGIRMP 121

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  L+++ G  +A PSAN   ++S T+ +H+L +S+  +I  ++DGG    GLEST
Sbjct: 122 AHDVFSTLLKSSGMAVAAPSANPYKKLSPTSAEHVL-NSLGGKISAVLDGGDCAHGLEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+++  EK  RILR G +    L + +  E+     +  T   PG + SHY P ++VRL 
Sbjct: 181 IIDL-TEKPFRILRTGPVTAAQLSQVLGEEV--LSPKAHTVAVPGNVTSHYQPNTKVRL- 236

Query: 240 AIHVNPREALIRFGNVPIKNIENA----IISLNLS----KTG--------KLKEAAFNLF 283
                          V ++ IENA    I  L+ S    KTG         + + + +L+
Sbjct: 237 ---------------VTLEEIENATGDNIACLHYSPVELKTGFKSKQMPTDVAQYSHDLY 281

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
             +  AD  G   I     P      A+++RL RA
Sbjct: 282 RALDDADKWGCDEIWVERPPVSEAWFAVHDRLNRA 316


>gi|225378684|ref|ZP_03755905.1| hypothetical protein ROSEINA2194_04354 [Roseburia inulinivorans DSM
           16841]
 gi|225209521|gb|EEG91875.1| hypothetical protein ROSEINA2194_04354 [Roseburia inulinivorans DSM
           16841]
          Length = 357

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 167/335 (49%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N +++A E +  G  +A PTETVYGL  D+ +P A +++Y  K RP+ NPLI H+   
Sbjct: 21  DENEMKEAAELIRKGELVAFPTETVYGLGADALHPEASKKIYAAKGRPSDNPLIVHICKF 80

Query: 68  -SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +V     V   +  LA  FWPGPLT++  +     +   +T  ++T   R+P      
Sbjct: 81  EELVSIAKEVPAQAEKLADAFWPGPLTMI--VWKNEKVPYETTGGMETVAIRMPKHPVAL 138

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLIE  G  +A PSAN SG+ S T   H+    +  +IP+I+DGG   IG+ESTI+++  
Sbjct: 139 KLIEESGCLIAAPSANTSGKPSPTEASHV-KLDLDGKIPMILDGGPVGIGIESTIIDL-T 196

Query: 186 EKKVRILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQV---- 236
           E    ILRPG +  E L+  +  E++        D  + P++PGM   HYAP++ +    
Sbjct: 197 EDTPMILRPGYITKEMLEEVLGEEVKIDPGIIASDSLTKPKAPGMKYKHYAPKADLVLVD 256

Query: 237 --------RLRAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                   ++  +    ++  ++ G +     K+   A I +++         A +L+  
Sbjct: 257 GEAENVVKKINELVAEKQKNGLKVGVIATDETKDQYQADIVVSIGARADEDAIAQHLYKI 316

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD    +I   S     +G AI NRL +AA 
Sbjct: 317 LREFDDWNVDAIYSESFATPRIGQAIMNRLLKAAG 351


>gi|295100870|emb|CBK98415.1| translation factor SUA5 [Faecalibacterium prausnitzii L2-6]
          Length = 341

 Score =  148 bits (374), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 168/336 (50%), Gaps = 28/336 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D+  + +A E L  G  +A+PTETVYG+A D+RN  A+ +++  K RP  NPLI HV+ 
Sbjct: 10  ADTAGIARAAELLRQGELVALPTETVYGIAADARNGEAVSKIFVAKGRPQDNPLIVHVTG 69

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M+    S  P     L   F PGPLT+++      ++     A L T   R+P     
Sbjct: 70  PEMLHGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVAAECCAGLDTVGIRMPSHPVA 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +IE  G   A PSAN SG+ S TN + +  + +   +PLI+DGG    G+EST+V+V 
Sbjct: 128 RAVIEASGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDWGVESTVVSVV 186

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQVRL 238
            EK   + RPG + +E L+RA+  E+E        + E +  +SPGM   HYAP++ V L
Sbjct: 187 GEKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKADVTL 245

Query: 239 R-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                         H     + + F     K     +  +   + G   + A ++F  ++
Sbjct: 246 LDGTFEQFKAYVDAHAAEDPSCLCFTGEAEK---LGVPCVEYGREGDGADQAKHIFRSLR 302

Query: 288 IADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322
             D+ G  ++ ++  P   GL +A+ NRL RAAA R
Sbjct: 303 ALDEQG-DAVVYARCPQKDGLSMAVYNRLIRAAAFR 337


>gi|157364237|ref|YP_001471004.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO]
 gi|157314841|gb|ABV33940.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO]
          Length = 338

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 167/322 (51%), Gaps = 17/322 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LRKA + +  G  +A PTETVYGL  D  N +A+ ++++IK RPA NPLI H+ D   ++
Sbjct: 17  LRKAAQTIKEGGVVAFPTETVYGLGADCFNISAVLKIFQIKNRPADNPLIIHIYDKKQLE 76

Query: 72  KHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +    D   + ++  +FWPGP+T +       ++    T  L+T   R+P     +  + 
Sbjct: 77  ELVEGDIEQNSYVMDVFWPGPVTFIFR--KKANVPKEVTGGLETVAIRMPSHPVAQVFLR 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T  +H++ + +   + +IIDGG + +GLESTIV++  +  V
Sbjct: 135 LSGTPVAAPSANLSGKPSPTRAEHVI-ADLYGSVDVIIDGGETPLGLESTIVDLSRDYPV 193

Query: 190 RILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            +LRPG   IE +K+      I   L    +E   P +PGM   HYAP   + L      
Sbjct: 194 -LLRPGPATIEEIKKIVPNLYIPDFLLKKENEPVKPLAPGMAYRHYAPDKPLILVINEKK 252

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKT---GKLKEA---AFNLFNYMKIADDSGASSIA 298
             E L +  + PI   E         KT   GKL+E    A NLF+ ++  D   A S+ 
Sbjct: 253 LDEVLSKHPDSPIICPEEMSDRFYGRKTIIMGKLREPFTIAQNLFHVLREVDSLNAESVI 312

Query: 299 FSSIPNHGLGIAINNRLERAAA 320
              +   G+  ++ NRL++AA+
Sbjct: 313 VIGLEPQGILFSVMNRLKKAAS 334


>gi|300853437|ref|YP_003778421.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
 gi|300433552|gb|ADK13319.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
          Length = 350

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 180/338 (53%), Gaps = 32/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A + +  G  +A PTETVYGL  ++ NP A+++++E K RP  NPLI H+SDI
Sbjct: 14  DMGIVEEAGKVIKEGGLVAFPTETVYGLGANALNPDAVKKIFEAKGRPQDNPLIVHISDI 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +K+    V  ++  L K FWPGP+T++L    +  I  +++A+L +   R+P     +
Sbjct: 74  EDIKELVVDVPKIAKKLMKKFWPGPMTIILP--KSQVIPDITSASLPSIGIRMPSNIIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI T   P+A PSAN SG+ S T+V+  +   +  ++  I+ G + ++G+ESTI++   
Sbjct: 132 ELIRTSKVPIAAPSANISGRPSPTDVERCI-EDLNGKVDFILGGDMCEVGVESTIIDCTV 190

Query: 186 EKKVRILRPGGLEIETLKR-AISVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRA 240
                +LRPGG+ +E LK    S+ ++  V    D+   P++PGM   HYAP++   L+ 
Sbjct: 191 NPAC-VLRPGGITLEALKEIDDSIYIDPAVMKKPDKNLRPKAPGMKYRHYAPKAP--LKI 247

Query: 241 IHVNPREALIRFGNVPIKNI--ENAIIS----------------LNLSKTGKLKEAAFNL 282
           +  + ++ + +  N  ++N   EN ++                 ++L     +   + NL
Sbjct: 248 VKGDLKKTIEKI-NEMVQNYIGENKVVGILATDETKDFYKNGLVISLGSRNNMISISKNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  DD     I   +   +G+G A+ NRL ++A 
Sbjct: 307 FETLRSFDDKNVDIIIAEAFDENGIGTAVMNRLNKSAG 344


>gi|83591211|ref|YP_431220.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073]
 gi|83574125|gb|ABC20677.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073]
          Length = 352

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 171/342 (50%), Gaps = 30/342 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + + + +R A + L  G  +A PTETVYGL  ++ +  A+RR++  K RPA NPLI H++
Sbjct: 12  VPELHKIRLAAKILARGGVVAFPTETVYGLGANALDGRAVRRIFRAKGRPADNPLIVHIA 71

Query: 66  DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG- 122
               V+   A + P +  L + FWPGPLTL+   +  +D+ P   TA L T   R+P   
Sbjct: 72  SFQDVQDLVAYLPPRATLLMQRFWPGPLTLI---MPRSDLIPDEVTAGLDTVGLRMPSHP 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + LI     P+A PSAN SG+ S T  +H+L   +  +I  +IDGG S +G+EST+++
Sbjct: 129 VAQALIRATRLPIAAPSANTSGRPSPTTGQHVL-RDLRGKIDAVIDGGPSTVGVESTVLD 187

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRLR 239
           +       ILRPGG+  E L+  +  V ++  V   +   P++PGM   HYAP  +V L 
Sbjct: 188 LTSPVPT-ILRPGGITYEELQAVLGKVAIDPAVKGQQVEHPKAPGMKYKHYAPAGEVFLV 246

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA-------------------AF 280
              +    A +R      +     +  L  S+T    +                    A 
Sbjct: 247 TGDLERVVARVRALVAAWQRRGRRVAVLATSETAPFYQDEPRPDYLEVLGSRRQPETIAA 306

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           NLF  ++  D   A  I   ++   G+G+AI NRL ++AA R
Sbjct: 307 NLFGALRNCDRHHADIILAETVKEEGIGLAIMNRLRKSAANR 348


>gi|167760279|ref|ZP_02432406.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704]
 gi|167662162|gb|EDS06292.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704]
          Length = 352

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 172/336 (51%), Gaps = 37/336 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A   L  G  +A PTETVYGL  D+ N  A +++Y  K RP+ NPLI H++++  + 
Sbjct: 21  IREAGRILREGGLVAFPTETVYGLGADALNEHAAQKIYAAKGRPSDNPLIIHITNMDDLA 80

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC-GFTKKLI 128
           K  S  P +   +A  +WPGPLT++ D    + I P  +T  L T   R+P     +++I
Sbjct: 81  KITSFIPEAAKVIADKYWPGPLTMIFD---KSGIVPYGTTGGLDTVAVRMPSHEIAREVI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G  +A PSAN SG+ S T   H+    +  +I +IIDGG   IG+ESTI+++     
Sbjct: 138 DAGGGYIAAPSANTSGRPSPTTALHV-EEDMTGKIDMIIDGGSVDIGVESTILDMTVVPP 196

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVRLRAI 241
           + ILRPG +  E L   I    E  VD+T        TP++PGM   HYAP+++  L  +
Sbjct: 197 M-ILRPGAITREMLTELIG---EVSVDKTLITPDSKKTPKAPGMKYRHYAPKAE--LTIV 250

Query: 242 HVNPREALIRFGNVPIKNIENAII--------SLNLSKTGKLK-------EA--AFNLFN 284
               +E + +  ++  + +E  +         ++     G +K       EA  A +L+ 
Sbjct: 251 EGEIKEVIAKINSLAAEKLEEGLKVGIIGTEETVGCYPAGDVKSIGTREDEATIAGSLYG 310

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+ G   I   +    G+G AI NRL +AA 
Sbjct: 311 ILREFDNDGVDYIYSEAFATGGIGSAIMNRLLKAAG 346


>gi|240143383|ref|ZP_04741984.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis L1-82]
 gi|257204651|gb|EEV02936.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis L1-82]
 gi|291537128|emb|CBL10240.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis M50/1]
 gi|291540366|emb|CBL13477.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis XB6B4]
          Length = 350

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 169/334 (50%), Gaps = 32/334 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-SMV 70
           +R+A E + +G  +A PTETVYGL  ++ +P A +R+Y  K RP+ NPLI H+     ++
Sbjct: 18  MREAAEIIRSGGLVAFPTETVYGLGANALDPEASKRIYAAKGRPSDNPLIVHICRFEELL 77

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                V P +  LA  FWPGPLT++  +     +   +T  + T   R+P       LI+
Sbjct: 78  SIAKEVPPQAEKLADAFWPGPLTMI--VWKNEKVPYETTGGMDTVAIRMPNHPVALALID 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  +A PSAN SG+ S T   H+ +  +  +IP+I+DGG   IG+ESTI+++  EK  
Sbjct: 136 ESGCMIAAPSANTSGKPSPTEAGHV-ALDLDGKIPMILDGGPVGIGIESTIIDL-TEKVP 193

Query: 190 RILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            ILRPG +  E L+  +  E+         D T  P++PGM   HYAP++ + L      
Sbjct: 194 MILRPGYITKEMLEEVLGEEVRIDPGIIASDSTKKPKAPGMKYKHYAPKADLVLVE---G 250

Query: 245 PREALIRFGNVPIKNIENAIISLNL---SKTGKLKEAAF---------------NLFNYM 286
            +EA++   N  ++  + A + + +    +T  L +A +               +L+  +
Sbjct: 251 EQEAVVAEINALVREKQAAGLKVGVVATDETESLYQADYVVTIGARSDEDAIARHLYKIL 310

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD    +I   S     +G AI NRL +AA 
Sbjct: 311 REFDDWNVDAIYSESFSTPRIGQAIMNRLMKAAG 344


>gi|291548626|emb|CBL24888.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus torques L2-14]
          Length = 508

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 164/339 (48%), Gaps = 35/339 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + + +A   L  G  +A PTETVYGL  D+    A ++ Y  K RP+ NPLI H++D 
Sbjct: 14  NQDVIEEAGNVLKQGGLVAFPTETVYGLGADALKEEAAKKTYAAKGRPSDNPLIVHIADY 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +KK A ++ P +  LA  FWPGPLT++ +   +  +   +T  L T   R+P      
Sbjct: 74  EDLKKVAVNIPPETDALAAHFWPGPLTMIFE--KSESVPYGTTGGLDTVAVRMPSDPIAA 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G  ++ PSAN SG+ S T  +H+    +  +I +I+DGG   IGLESTI+++  
Sbjct: 132 ALIRAAGGFVSAPSANTSGRPSPTTAEHV-RVDLEGKIDMILDGGAVDIGLESTILDMTV 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVRL 238
           E  + ILRPG +  +  +  I       VDET         P++PGM   HYAP++++ +
Sbjct: 191 EPPM-ILRPGAITADMFEEVIG---PVGVDETLVNSESKQAPKAPGMKYRHYAPKAKMMI 246

Query: 239 RAIHVNPREALIRFGNVPIK-----------------NIENAIISLNLSKTGKLKEAAFN 281
             +  N RE ++    +                       N  I  N+         A N
Sbjct: 247 --VEGNIREEILAIRQLAYAAHREGKEVGIIATGETVQFYNYGIVKNIGTRENENTIARN 304

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L+  ++  D+     I   S   +G+G AI NRLE+AA 
Sbjct: 305 LYRVLREFDEEDVDLIYSESFAMNGIGKAIMNRLEKAAG 343


>gi|170090858|ref|XP_001876651.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648144|gb|EDR12387.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 380

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/250 (38%), Positives = 140/250 (56%), Gaps = 20/250 (8%)

Query: 3   IMSITDSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           I S   S AL  A   L D    +  PTETVYGL   +++  A  +++  K RP  NPLI
Sbjct: 24  ISSPDTSRALDIAAHHLRDLSQTVVFPTETVYGLGASAQSTQATSKIFSTKGRPPDNPLI 83

Query: 62  CHVSDISMVKKHASVDPLSLHLA-------KLFWPGPLTLVLDLLSTTDIHP-LSTANLK 113
            HVS ++M++   ++ PL  +L+       K FWPGPLTL+       DI P + TAN  
Sbjct: 84  VHVSSLTMLR---TLLPLGYNLSRAYEVLIKHFWPGPLTLLFP--RNADIIPTIVTANQP 138

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           +   R+P     + LI +   PLA PSAN SG+ S T V+H+L   +  ++P+I+DGG  
Sbjct: 139 SVAIRMPSHPVARALIASSNLPLAAPSANSSGKPSPTRVEHVL-RDLDGKVPIILDGGAC 197

Query: 173 KIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKS 228
            IGLEST+V+ +Q +  +RILRPGG+ +E ++R +  E+  C       + P +PGM   
Sbjct: 198 DIGLESTVVDGLQADGNIRILRPGGITVEEIERVLRQEMHDCAQIPKVLNAPTTPGMKYR 257

Query: 229 HYAPRSQVRL 238
           HY+P   V L
Sbjct: 258 HYSPSVPVTL 267


>gi|27363877|ref|NP_759405.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
 gi|27359994|gb|AAO08932.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
          Length = 328

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 170/327 (51%), Gaps = 28/327 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  +   + +A E L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI H
Sbjct: 14  LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 73

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           +  +  +   A   P   + LA+ +WPGP+TL+L       + P+ T  L+T   R+P  
Sbjct: 74  IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLK--KAPHVTPVVTGGLETIGIRMPAH 131

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L+++ G  +A PSAN   ++S T+ KH++ +S+  +I  ++DGG    GLESTIV
Sbjct: 132 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVM-NSLGGKIAAVLDGGDCAHGLESTIV 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRSQV 236
           ++  EK  RILR G +    L   +S       +E S+P S     PG + SHY P ++V
Sbjct: 191 DL-TEKPFRILRTGPVTAAQLSATLS-------EEVSSPVSHNVAVPGNVTSHYQPNTRV 242

Query: 237 RL-----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           RL      A+  + + A + +   P    EN  +    S    + E + +L+  +  AD 
Sbjct: 243 RLVQASDLALVGDKKIAYLHY--TPFTAQENVEVRQMPS---SVAEYSHDLYRTLDEADK 297

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318
            G   I     P      A+++RL RA
Sbjct: 298 WGCEEIWVERPPVTESWFAVHDRLNRA 324


>gi|323142098|ref|ZP_08076946.1| Sua5/YciO/YrdC/YwlC family protein [Phascolarctobacterium sp. YIT
           12067]
 gi|322413485|gb|EFY04356.1| Sua5/YciO/YrdC/YwlC family protein [Phascolarctobacterium sp. YIT
           12067]
          Length = 368

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 172/334 (51%), Gaps = 33/334 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68
           +++A   + AG  ++ PTETVYGL  D  NP A+ +++  K RP  NPLI H++   DI+
Sbjct: 18  MQEAAALIRAGEVVSFPTETVYGLGADGLNPEAVAKIFAAKGRPNDNPLILHIAKKEDIA 77

Query: 69  MVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +    +A+   L  H    FWPGPLTL+++   +  +    +A L+T   R P   F +
Sbjct: 78  QLTTCLNANAKKLMEH----FWPGPLTLIVN--KSAIVPDAVSAGLETVAVRFPSNKFAQ 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             I   G P+A PSAN SG+ S TN + +L     K I  ++DGG   IGLEST+V+   
Sbjct: 132 DFIRACGCPIAAPSANISGRPSPTNAQDVLEDMQGK-IAGMLDGGNCGIGLESTVVDTTS 190

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCV--DETSTPQSPGMLKSHYAPRSQVRL---R 239
                ILRPGG+  E L   + +VE++  +  D+   P++PGM   HYAP++ V L    
Sbjct: 191 AVPT-ILRPGGITYEMLTEVMGAVEIDPALQGDKNFKPKAPGMKYRHYAPKAPVYLFEGE 249

Query: 240 AIHVNPR---EALIRFGNVPI---KNIENAII------SLNLSKTGKLKEA-AFNLFNYM 286
           A    P+   +AL     V +     +E+ +        L LS  G  +E  A +LF  +
Sbjct: 250 ACKCLPQVIAKALAEGKTVGVLCGHELESELAELVEKQQLQLSCWGDSREQLAADLFYLL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  D +    I    +   GLG+AI NRL +AA 
Sbjct: 310 RDFDRTCPDVILAEGVEEDGLGLAIMNRLRKAAG 343


>gi|160945366|ref|ZP_02092592.1| hypothetical protein FAEPRAM212_02888 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443097|gb|EDP20102.1| hypothetical protein FAEPRAM212_02888 [Faecalibacterium prausnitzii
           M21/2]
          Length = 344

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 170/336 (50%), Gaps = 28/336 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   + +A + L  G  +A+PTETVYG+A D+RN  A+R ++  K RP  NPLI HV+ 
Sbjct: 13  ADEAGVAEAAQLLRQGQLVALPTETVYGIAADARNGAAVRDIFVAKGRPQDNPLIVHVTG 72

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M+    S  P     L   F PGPLT+++      ++     A L T   R+P     
Sbjct: 73  PEMLPGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVADECCAGLDTVGIRMPSHPVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +I+  G   A PSAN SG+ S TN + +  + +   +PLI+DGG   +G+EST+V+V 
Sbjct: 131 RAVIQQSGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDVGVESTVVSVV 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQVRL 238
            +K   + RPG + +E L+RA+  E+E        + E +  +SPGM   HYAP++ V L
Sbjct: 190 GDKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKADVTL 248

Query: 239 R-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                         H +   + + F     ++ +  +  +   + G   + A ++F  ++
Sbjct: 249 LNGTFAQFKAYVDAHKDENPSCLCFTG---ESAKLDVPCVEYGREGDGADQAKHIFRSLR 305

Query: 288 IADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322
             D+ G   + ++  P   GL +A+ NRL RAAA R
Sbjct: 306 ALDEQG-DGVVYARCPQKDGLSMAVYNRLIRAAAFR 340


>gi|225419868|ref|ZP_03762171.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme
           DSM 15981]
 gi|225041492|gb|EEG51738.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme
           DSM 15981]
          Length = 360

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 166/341 (48%), Gaps = 37/341 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A E L  G  +A PTETVYGL  ++ +  A R++YE K RP+ NPLI HV+D   V+
Sbjct: 19  LLEAAEILREGGLVAFPTETVYGLGANALDEAAARKIYEAKGRPSDNPLIAHVADPEDVE 78

Query: 72  KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P +   L + FWPGPLT++     +  +   +T  L T   R+P      +LI 
Sbjct: 79  ALVEYIPENGRKLMEAFWPGPLTMIFP--KSPAVPYGTTGGLDTVAIRMPSDPVANRLIA 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV+V C +  
Sbjct: 137 LAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIDMIIDGGPVGIGVESTIVDVSC-RIP 194

Query: 190 RILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRL------ 238
            +LRPG + +E L+  +  V+++  +         P++PGM   HYAPR+++ L      
Sbjct: 195 TVLRPGAITMEMLREVLDEVKIDPAILGPMGADMRPRAPGMKYKHYAPRAELTLVEPTEG 254

Query: 239 ---------RAIH-VN--PREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAA 279
                    R I  VN   +E L     V I          E  ++  ++    K +  A
Sbjct: 255 QGEDAAAVERMIQRVNQLAQEKLAAGSRVGIICTDESRDRYEGGLVR-SIGARAKKETVA 313

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NL+  ++  DD     I   S     LG AI NRL +AA 
Sbjct: 314 HNLYAVLREFDDLKVDYIYSESFSEDHLGQAIMNRLSKAAG 354


>gi|206895712|ref|YP_002247420.1| universally conserved protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738329|gb|ACI17407.1| universally conserved protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 330

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 170/323 (52%), Gaps = 20/323 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +RKAC+ L  G  +A PTETVYGL   + N  A+R+++ +K RP  NPLI HVSD+
Sbjct: 11  EQSLIRKACQVLLDGFVVAFPTETVYGLGAIATNEEAVRKIFHLKGRPTDNPLIVHVSDL 70

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124
           S V    +  P  +  + ++FWPGPL+++L    +    PL T   L++   R+P     
Sbjct: 71  SQVYDLVTEVPEKARKVMEVFWPGPLSVILQAKESV---PLVTRGGLESVAIRMPAHPVA 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G P+A PSAN+SG+ S T  +H+       +  LI+D G + +GLEST+V+V+
Sbjct: 128 LSLIRCAG-PIAAPSANKSGRPSPTTAEHVYQD--FGDDVLILDAGPTLVGLESTVVDVR 184

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRL-RAI 241
            E+  +I RPG +  E L+    V +EY   ++E     SPGM   HYAP   V L R +
Sbjct: 185 -EEPWKIYRPGAVTREMLEAHGHVSVEYVGKIEENGAVPSPGMKYRHYAPNVPVFLFRDV 243

Query: 242 HVNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
              P    I      G   I + +  II ++L        AA  ++  ++ A+  G ++ 
Sbjct: 244 DELPPNQDITVIALDGLASILSGKPNIIFISLGS--DQHSAAARIYMALRQAEQFGRTAY 301

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
               +   G+GIA N R+ +AA 
Sbjct: 302 V-QLMDEEGIGIAYNERVRKAAG 323


>gi|167747415|ref|ZP_02419542.1| hypothetical protein ANACAC_02135 [Anaerostipes caccae DSM 14662]
 gi|167652777|gb|EDR96906.1| hypothetical protein ANACAC_02135 [Anaerostipes caccae DSM 14662]
          Length = 351

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/237 (38%), Positives = 134/237 (56%), Gaps = 11/237 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  A+R+A   L  G  +A PTETVYGL        A  R+YE K RP+ NPLI H+  +
Sbjct: 16  NKEAIREAAGLLREGKLVAFPTETVYGLGGSGWMEEAASRIYEAKGRPSDNPLILHIGSM 75

Query: 68  SMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
            M+ + AS  P     A   FWPGPLT++   L  +D  P   T  L +   R+P     
Sbjct: 76  EMIDEIASCVPGPAKKAMDAFWPGPLTVI---LPKSDKVPYRVTGGLDSVAVRMPSHPAA 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L+   G P+A PSAN SG+ S T  +H++   +  +IP+++DGG  ++G+ESTIV+  
Sbjct: 133 LALLREAGVPVAAPSANTSGRPSPTKAEHVV-EDLDGKIPMVLDGGKVEVGVESTIVDFT 191

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL 238
            E  V ILRPG +  + L++A+S E+      V E + P++PGM   HYAP++Q+ L
Sbjct: 192 GEVPV-ILRPGKITKDELEKALSTEVLMSTLSVKEDTVPRAPGMKYKHYAPKAQLVL 247


>gi|295105441|emb|CBL02985.1| translation factor SUA5 [Faecalibacterium prausnitzii SL3/3]
          Length = 341

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 170/336 (50%), Gaps = 28/336 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   + +A + L  G  +A+PTETVYG+A D+RN  A+R ++  K RP  NPLI HV+ 
Sbjct: 10  ADEAGVAEAAQLLRQGQLVALPTETVYGIAADARNGAAVRNIFVAKGRPQDNPLIVHVTG 69

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M+    S  P     L   F PGPLT+++      ++     A L T   R+P     
Sbjct: 70  PEMLPGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVADECCAGLDTVGIRMPSHPVA 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +I+  G   A PSAN SG+ S TN + +  + +   +PLI+DGG   +G+EST+V+V 
Sbjct: 128 RAVIQQSGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDVGVESTVVSVV 186

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQVRL 238
            +K   + RPG + +E L+RA+  E+E        + E +  +SPGM   HYAP++ V L
Sbjct: 187 GDKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKADVTL 245

Query: 239 R-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                         H +   + + F     ++ +  +  +   + G   + A ++F  ++
Sbjct: 246 LNGTFAQFKAYVDAHKDENPSCLCFTG---ESAKLNVPCVEYGREGDGADQAKHIFRSLR 302

Query: 288 IADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322
             D+ G   + ++  P   GL +A+ NRL RAAA R
Sbjct: 303 ALDEQG-DGVVYARCPQKDGLSMAVYNRLIRAAAFR 337


>gi|294101619|ref|YP_003553477.1| Sua5/YciO/YrdC/YwlC family protein [Aminobacterium colombiense DSM
           12261]
 gi|293616599|gb|ADE56753.1| Sua5/YciO/YrdC/YwlC family protein [Aminobacterium colombiense DSM
           12261]
          Length = 326

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/311 (35%), Positives = 160/311 (51%), Gaps = 13/311 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   + +G  +A PTETVYGL  +  +  A+R+++  K RP  NPLI H +    V++ 
Sbjct: 20  EAAYAIRSGKLVAFPTETVYGLGANGLDDGAVRKIFAAKGRPGDNPLILHFASSEDVEQV 79

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETY 131
           A V+  +  L   FWPGPLTLV   L    + P S TA L T   R+P       LI+  
Sbjct: 80  AYVNERAKLLMDSFWPGPLTLV---LPAKPVVPNSVTAGLGTVAVRMPSHPVAMALIKVA 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSANRSG+ S T    +L + I  ++ +I+DGG + +GLEST+++V     V +
Sbjct: 137 GVPIAAPSANRSGRPSPTEAASVL-ADIGDDVDIILDGGATDVGLESTVIDVTG-PSVVL 194

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI- 250
           LR GG+ +E L+  I  E++   DE    +SPG    HYAP   + L    V     L+ 
Sbjct: 195 LRAGGMPVERLEEVIE-EVKLVPDEAKKKRSPGTRYRHYAPLIPLLLWKNGVLRHSPLVM 253

Query: 251 --RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
             R G + IK     +    L KT   +  A  LF   +  +  G   I      + G+G
Sbjct: 254 GKRIGYIGIKEPPFPVEEKILFKTP--ENYAQGLFLAFRTFEKKGIEVIVAEWPNSKGIG 311

Query: 309 IAINNRLERAA 319
           +A+ +RL RAA
Sbjct: 312 LALRDRLSRAA 322


>gi|134300997|ref|YP_001114493.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum reducens MI-1]
 gi|134053697|gb|ABO51668.1| translation factor SUA5 [Desulfotomaculum reducens MI-1]
          Length = 354

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 168/343 (48%), Gaps = 30/343 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S  D   + +A   +  G  +A PTETVYGL  +  +  A+  +Y  K RP+ NPLI HV
Sbjct: 14  SALDMRLINQAAAIIKRGGLVAFPTETVYGLGANGLDGKAVADIYRAKGRPSDNPLILHV 73

Query: 65  SDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +D +MV++   ++ P +  L K FWPGPLTLV+     + I    T  L T   R+P   
Sbjct: 74  ADTNMVRELSKNLPPKATLLMKKFWPGPLTLVVP--RASHIPREVTGGLATVAVRMPHHP 131

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTIV 181
               LI+  G P+A PSAN+SG+ S TN +H+ L    C  I  I+DGG + +GLEST++
Sbjct: 132 VALALIKASGVPIAAPSANKSGRPSPTNAEHVKLDLQGC--IDAILDGGPAGLGLESTVL 189

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ++     V ILRPGG+  E L  A+         L   + +   P+SPGM   HYAP + 
Sbjct: 190 DLTGAAPV-ILRPGGVTYEQLLEALGDVTIDPSALGERLSKDKAPRSPGMKYKHYAPAAP 248

Query: 236 V--------RLRAIHVNPREALIRFGN-VPIKNIENAIISL----NLSKTGKLKE---AA 279
           +        +++A  V   E L++ G  V I   E           + K G  K     A
Sbjct: 249 LILFEGEPEKVKAAIVERAEELLKGGKRVGILATEEHAQDYPPDSKILKIGSRKNPAGVA 308

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             LF  ++  D      I        G+G+A+ NRL RAA  R
Sbjct: 309 AMLFKRLREFDQLQVDVILTEGFETKGIGLAVMNRLRRAAGER 351


>gi|225028193|ref|ZP_03717385.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353]
 gi|224954505|gb|EEG35714.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353]
          Length = 353

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 166/336 (49%), Gaps = 33/336 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL+KA E +  G  +A PTETVYGL  D+ N  A  ++Y  K RP+ NPLI H+ D+  V
Sbjct: 19  ALKKAGEIIREGGLVAFPTETVYGLGADALNAEASAKIYAAKGRPSDNPLIVHIHDVDQV 78

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            + AS  P  +  + + FWPGPLT++L+  S   +   +T  LKT   R+P     +  I
Sbjct: 79  YEIASEVPEAAKKVMEKFWPGPLTVILNKKSC--VPDGTTGGLKTVAIRMPSHPLARDFI 136

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G  +A PSAN SG+ S T   H+    +   IPLI+DGG   IG+ESTI+++  +  
Sbjct: 137 RESGRMIAAPSANTSGRPSPTLASHVY-EDMQGRIPLILDGGAVGIGIESTIIDMSTDTP 195

Query: 189 VRILRPGGLEIETLKRAI-SVELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             ILRPG +  + L+  +  V ++  V      +    ++PGM   HYAP+ Q+ L    
Sbjct: 196 T-ILRPGYITKDMLEEVLPKVNIDPAVTGRTMKKNVVAKAPGMKYRHYAPKGQLTLVE-- 252

Query: 243 VNPREALIRFGNVPIKNIE------------------NAIISLNLSKTGKLKEAAFNLFN 284
              R+ +I   N  +K  E                  +A I  ++    K +  A NL+ 
Sbjct: 253 -GDRDKVIARINELVKEKEEEGHKVGVIGTDETLDSYHADILRSIGSRQKPETVAANLYR 311

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  DD     +   S    GLG AI NR+ +AA 
Sbjct: 312 ILREFDDLECDYMYSESFFEQGLGNAIMNRMLKAAG 347


>gi|225570088|ref|ZP_03779113.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM
           15053]
 gi|225161558|gb|EEG74177.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM
           15053]
          Length = 350

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 172/332 (51%), Gaps = 29/332 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L  G  +A PTETVYGL  D+ +  A  ++Y  K RP+ NPLI H++++  ++
Sbjct: 18  IQEAGDILKRGGLVAFPTETVYGLGADALSEEAAAKIYAAKGRPSDNPLIVHITNMGDLE 77

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC-GFTKKLI 128
           K A   P  ++ +A  +WPGPLT++       DI P  +T  L T   R+P     +++I
Sbjct: 78  KVAEKIPAEAVKVAGKYWPGPLTMI---FHKKDIVPYGTTGGLDTVAVRMPSHEIAREVI 134

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G  +A PSAN SG+ S T  +H+    +   I +I+DGG  +IG+ESTI+++     
Sbjct: 135 DAGGGFIAAPSANTSGRPSPTTAQHV-KEDMDGRIEMIVDGGPVEIGVESTILDMTVTPP 193

Query: 189 VRILRPGGLEIETLKRAI-SVELEYCV---DETSTPQSPGMLKSHYAPRSQVRL------ 238
           + ILRPG +  E L   I +V +++ +   D T  P++PGM   HYAP +++ +      
Sbjct: 194 M-ILRPGAVTEEMLTELIGAVAVDHTLITADSTEAPKAPGMKYRHYAPNAELVIIEGPAS 252

Query: 239 -------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKI 288
                  R      +E   + G +  +   +   S ++   G  ++    A  L+  ++ 
Sbjct: 253 KVTEEINRLARARQKEGY-KVGIIGTEETVSGYTSGDVKSIGTREDESTIAGRLYAVLRE 311

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            DD G + I   S    G+G AI NRL +AA 
Sbjct: 312 FDDDGVNYIYSESFATGGIGSAIMNRLLKAAG 343


>gi|198283490|ref|YP_002219811.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667682|ref|YP_002426096.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248011|gb|ACH83604.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519895|gb|ACK80481.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 328

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 167/331 (50%), Gaps = 40/331 (12%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+++A E L +G  +  PTETVYGL  D+ NP A+ R++  K RPA +PLI H++    +
Sbjct: 10  AMQRAAEILRSGGLVVFPTETVYGLGADAENPAAVARIFAAKGRPADHPLIVHMARRDHL 69

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            + +  + P +  LA+ +WPGPLTL+L       +    T    T   RVP       L+
Sbjct: 70  SQWSRDIPPAAFVLARRYWPGPLTLILH--RACRVPDRVTGGQDTVGLRVPDHPLALMLL 127

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E +   +A PSANR GQ+S T V H+    +   +  I+DGG  ++G+ESTI+++   + 
Sbjct: 128 EAFSGGIAAPSANRFGQVSPTTVAHV-REELGDAMDFILDGGPCRVGIESTILDLSGHQP 186

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQ------SPGMLKSHYAPRSQVRL---- 238
            R+LRPG + +         E+E  +++   PQ      +PGML+SHYAPR+ + L    
Sbjct: 187 -RLLRPGAITL--------AEIEAVLEQPVIPQGNDALRAPGMLRSHYAPRTPLYLVPTG 237

Query: 239 -------RAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIA 289
                  R +    R  ++    +P   +  + +  ++     G  +E    L+  ++  
Sbjct: 238 HLKAEICRRLRQGQRVGVL---AMPATQLPESCLRHHMPPHPAGWARE----LYAQLRAL 290

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D  G   +   + P+     A+++RL RAA+
Sbjct: 291 DQQGLDGLLIEAPPSGADWQAVSDRLARAAS 321


>gi|302923042|ref|XP_003053592.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734533|gb|EEU47879.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 431

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 18/245 (7%)

Query: 10  NALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL KA  E      P+A PTETVYGL  D+    +++ +Y  K RP+ NPLI HV D+ 
Sbjct: 40  KALEKAAHELRTTPTPVAFPTETVYGLGADATRSPSVKGIYSAKGRPSDNPLISHVCDLE 99

Query: 69  MVKKH-----ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           M++++        DP+      L   FWPGPLT++L     T + P  TA LKT   R+P
Sbjct: 100 MLREYIGQIEGGQDPIPSRYRALIERFWPGPLTILLPNPQPTKLAPEVTAGLKTFGVRMP 159

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI+  G PLA PSAN S + S T  +H++   +   I LI+DGG   +G+EST
Sbjct: 160 SSPLALSLIKLAGVPLAAPSANASTKPSPTTAQHVM-DDLRGRIELILDGGQCAVGVEST 218

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR------AISVELEYCVDETSTPQSPGMLKSHYAPR 233
           +V+  C+  V +LRPGG+ ++ L+       A+    +   +  + P++PGM   HY+P+
Sbjct: 219 VVDGLCDPPV-VLRPGGIGLDELRSCPGWEGAVIAYKDQSEEGKAAPRAPGMKYKHYSPK 277

Query: 234 SQVRL 238
           ++V L
Sbjct: 278 ARVVL 282


>gi|302390585|ref|YP_003826406.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646]
 gi|302201213|gb|ADL08783.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646]
          Length = 343

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 166/327 (50%), Gaps = 28/327 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  +A PTETVYGL  ++ +  A  ++Y+ KKRP  NPLI H+     + K A
Sbjct: 17  AARVIKNGGLVAFPTETVYGLGANALDEKAAFKIYQAKKRPQDNPLIVHIHSPGELDKLA 76

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           S  P +   L + FWPGPLT+VL+   +  +   +T  L T   R+P       LI   G
Sbjct: 77  SNVPRTARILMEKFWPGPLTIVLE--KSGAVPYGTTGGLDTVAVRMPRHPVALALIRESG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSAN SG+ S T    +    +   + +I+DGG  ++G+EST++++  E  V IL
Sbjct: 135 VPIAAPSANISGRPSPTTAGDVY-EDLAGRVDIILDGGPCEVGVESTVLDLTGEVPV-IL 192

Query: 193 RPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           RPGG+  E L+  +  VEL+  + E   P+SPG    HY+P+++V    +   P EA +R
Sbjct: 193 RPGGVTREELEAVLGRVELDPGLAEGQKPKSPGQKYKHYSPKARV---LVVEGPIEAQVR 249

Query: 252 FGNVPIK---------NIENAIISLNLSKTGKL-----KEAAF----NLFNYMKIADDSG 293
                 K          I   + +    +TG +     +EA      NLF+ ++  D  G
Sbjct: 250 KITELAKKLTAEGKKVGIMATVQTRGYYETGCVLSVGDREAPLTISSNLFSVLRKFDKLG 309

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              +    IP  GLG+A+ NRL +AA 
Sbjct: 310 VEEVLAEGIPETGLGLAVMNRLRKAAG 336


>gi|320100446|ref|YP_004176038.1| translation factor SUA5 [Desulfurococcus mucosus DSM 2162]
 gi|319752798|gb|ADV64556.1| translation factor SUA5 [Desulfurococcus mucosus DSM 2162]
          Length = 357

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 170/345 (49%), Gaps = 41/345 (11%)

Query: 8   DSNALRKACE-FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           D   + KA E  L+ GL +A PTETVYGL   +    A+ ++++ K RP  NPLI HVS 
Sbjct: 13  DKEVIDKAAEILLNRGL-VAFPTETVYGLGAVAYYEDAVLKVFKAKMRPPDNPLIIHVSS 71

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPC 121
           + M+ + A+  P   + L + FWPGPLTL+L        HP    + T  L T   R+P 
Sbjct: 72  LDMLNEVATGIPDDAYRLIEKFWPGPLTLILPR------HPSIPRVVTGGLDTVAVRMPG 125

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                KLI+  G P+A PSAN SG+ S T  +H++   +   +  IID G +  G+EST+
Sbjct: 126 HPVALKLIDATGRPVAAPSANISGRPSPTTGEHVI-RDLMGRVDAIIDAGETFFGVESTV 184

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV-----ELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           VN+  +  V +LRPG   +E +++A+       E    +  +    +PGM   HY+P ++
Sbjct: 185 VNILEDPPV-LLRPGAYPVEEVEKALGKKIVIPEFARGLAYSEIALAPGMKYRHYSPEAK 243

Query: 236 VRL-------RAIHVNPREALIRFGNVP-------------IKNIENAIISLNLSKTGKL 275
           + L         I     EA    G V               +++ N      L     L
Sbjct: 244 LILVEAEGSYEYIAGRVIEAARSLGGVGELCVISSSETMHYYRSLSNVKAVFTLGSRVNL 303

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            E A NLF  +++ D++G   +   S P  G+G+A+ NRL +A++
Sbjct: 304 YEVARNLFKVLRLVDEAGCRVVFSESFPETGIGLAVMNRLRKASS 348


>gi|268317144|ref|YP_003290863.1| Sua5/YciO/YrdC/YwlC family protein [Rhodothermus marinus DSM 4252]
 gi|262334678|gb|ACY48475.1| Sua5/YciO/YrdC/YwlC family protein [Rhodothermus marinus DSM 4252]
          Length = 317

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 167/317 (52%), Gaps = 19/317 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +A PTETVYGL  D+ NP A+R+++E K RP  NPLI H+  +  + 
Sbjct: 12  VHEAAALIRRGELVAFPTETVYGLGADAFNPEAVRKIFEAKGRPLDNPLIVHIVHLDQLA 71

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
                V   +    + F+PGPLTLVL      D+    TA L T   R+P     +  +E
Sbjct: 72  HLVRDVPEAARRFMERFFPGPLTLVLP--RHPDVPDEVTAGLPTVGVRMPRHPVAQAFLE 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSANRSG+ S T  + +  + +   I  I+ G  S +GLEST+V+    + V
Sbjct: 130 ACGTPVAAPSANRSGRPSPTRWEAVY-ADLNGRIACILQGDRSDMGLESTVVDCTGSEPV 188

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETS-TPQSPGMLKSHYAPRSQVRL-----RAIHV 243
            +LR G + +E L+  +  E     DETS   +SPG    HYAP+++V L      A+  
Sbjct: 189 -VLRAGAVPLEALREVVP-ETRLVGDETSLKARSPGTRYRHYAPQARVVLVDHPDEAV-P 245

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
           +PR A I  G  P  + E A  +  +     ++  A+ LF++ +  D    + I    +P
Sbjct: 246 DPRHAYI--GLTPPAHPE-AFGACCVCP--DVETYAYELFDFFRRCDAQNCTRIYAQRVP 300

Query: 304 NHGLGIAINNRLERAAA 320
           + GLG+A+ +RLERAA+
Sbjct: 301 HTGLGLALMDRLERAAS 317


>gi|329667596|gb|AEB93544.1| hypothetical protein LJP_1222c [Lactobacillus johnsonii DPC 6026]
          Length = 330

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 163/328 (49%), Gaps = 20/328 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I +   + +A   L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPLI  VS
Sbjct: 5   IFNKEQIPEAVALLRKGKLVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
           D  M++ + S  P  +  L K FWPGPLT++L +   T +    T  L TA FR P    
Sbjct: 65  DEQMMENYVSEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPNDDM 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLESTIV++
Sbjct: 124 THDLISGLGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLESTIVDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240
             EK   +LRPG +  E +   +  E+      T T   P++PGM   HYAP + V +  
Sbjct: 183 SVEKPT-VLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAPVLI-- 239

Query: 241 IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSG 293
             V+  E   +       G   +  +   I S N    GK + +AA NLF  ++  D   
Sbjct: 240 --VDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDGED 297

Query: 294 ASSIAFSSIPNHG-LGIAINNRLERAAA 320
                +    +HG +  A  NRL +AAA
Sbjct: 298 KIKRIYVQGFDHGAISAAYMNRLNKAAA 325


>gi|42518857|ref|NP_964787.1| hypothetical protein LJ0932 [Lactobacillus johnsonii NCC 533]
 gi|41583143|gb|AAS08753.1| hypothetical protein LJ_0932 [Lactobacillus johnsonii NCC 533]
          Length = 330

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 163/328 (49%), Gaps = 20/328 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I +   + +A   L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPLI  VS
Sbjct: 5   IFNKEQIPEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
           D  M++ + S  P  +  L K FWPGPLT++L +   T +    T  L TA FR P    
Sbjct: 65  DEQMMENYVSEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPNDDM 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLESTIV++
Sbjct: 124 THDLISGLGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLESTIVDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240
             EK   +LRPG +  E +   +  E+      T T   P++PGM   HYAP + V +  
Sbjct: 183 SVEKPT-VLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAPVLI-- 239

Query: 241 IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSG 293
             V+  E   +       G   +  +   I S N    GK + +AA NLF  ++  D   
Sbjct: 240 --VDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDGED 297

Query: 294 ASSIAFSSIPNHG-LGIAINNRLERAAA 320
                +    +HG +  A  NRL +AAA
Sbjct: 298 KIKRIYVQGFDHGAISAAYMNRLNKAAA 325


>gi|312869583|ref|ZP_07729734.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus oris PB013-T2-3]
 gi|311094869|gb|EFQ53162.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus oris PB013-T2-3]
          Length = 354

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 170/327 (51%), Gaps = 19/327 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ ++M
Sbjct: 21  NQIDEAAAAIQRGELVAFPTETVYGLGADATNEPAVKNVYLAKGRPSDNPLIVHVNSVAM 80

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
           V+K+A+  P +   L   FWPG LT++L +     +    T  L T  FR P    T  L
Sbjct: 81  VEKYAAEIPANARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLSTVAFRFPDNQPTLDL 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++    
Sbjct: 140 IGKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKITGILDDGPTRVGVESTVLDMSTAT 198

Query: 188 KVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238
            V ILRPG +  + ++  I S++L  + V +  TP++PGM   HYAP +QV +       
Sbjct: 199 PV-ILRPGAVTKQDIEGVIGSIDLNHHQVGKNETPKAPGMKYKHYAPSAQVYIVNEGTDW 257

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-G 293
               + +   P +  +      ++ +   + ++  S    +++A+  LF+ ++  DD   
Sbjct: 258 AKVAKWVAQQPFDVGVMAEERILQQLTLPMNAVQFSLGTGVEDASARLFDGLRGFDDQPN 317

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
             +I   +     LG A  NRL ++A 
Sbjct: 318 VKAIVTEAFTAKNLGRAYMNRLNKSAG 344


>gi|312793262|ref|YP_004026185.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180402|gb|ADQ40572.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 348

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 163/335 (48%), Gaps = 27/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI HVS  
Sbjct: 12  DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHVSSK 71

Query: 68  SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
            M++  A + D     L + FWPGPLT+V   L   D+ P + TA L T   R+P     
Sbjct: 72  DMLEMCAEITDERVYMLIERFWPGPLTIV---LPKKDVIPENVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  KH++   + K + +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMGK-VDVIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAP-------R 233
            EK V ILRPG +    LK  +  +E    V E  T   P+SPGM   HYAP       +
Sbjct: 188 GEKAV-ILRPGAISYFALKEVLGDIEYSKSVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------KEAAFNLFNY 285
            ++  R   +N  +  + F    +  +     + N     KL        KE   NLF+ 
Sbjct: 247 GRIDKRIDKINEMKKKLEFKGYNVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSI 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  +  G   I           +A+ NRL +AAA
Sbjct: 307 LRKFNQLGVDYILCEWGEFDLEFLALENRLYKAAA 341


>gi|313905026|ref|ZP_07838396.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cellulosolvens 6]
 gi|313470096|gb|EFR65428.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cellulosolvens 6]
          Length = 355

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 171/338 (50%), Gaps = 33/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  AL+KA E L  G  +A PTETVYGL  ++ +P A RR+Y  K RP+ NPLI H++D 
Sbjct: 15  DMEALKKAGEILAGGGLVAFPTETVYGLGGNALDPEASRRIYAAKGRPSDNPLIVHIADW 74

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             +    S  P  +  LA  +WPGPLT++ +    +++ P  +T  L+T   R+P     
Sbjct: 75  DSLTPIVSRIPEKAKKLADAYWPGPLTMIFE---KSELVPYETTGGLETVAVRLPANKVA 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            ++I   G  +A PSAN SG+ S T   H+    +   I +IIDGG   IGLESTIV+  
Sbjct: 132 VEMIRQAGGYVAAPSANTSGRPSPTLASHV-EEDLGDRIDMIIDGGQVNIGLESTIVDFT 190

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQVRL-- 238
            E  V ILRPG L  E L+  +  V ++  +   +T   P++PGM   HYAP++ + +  
Sbjct: 191 EEIPV-ILRPGFLNKEMLEEVLGEVRIDPGIMAENTHIRPKAPGMRYKHYAPKADLAIVE 249

Query: 239 ---RAIHVNPREALIRFGNVPIKNIENAIISLNLSKT-------------GKLKEAAFNL 282
               A+    RE L+R G    + +   +I    S++                +  A +L
Sbjct: 250 GAPAAVFSKIRE-LVREGIAKEQRV--GVICTEESRSEYPEGIVRCIGSRADDRTIARHL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++  D  G  +I   S     +G AI NRL +AA 
Sbjct: 307 YEILRDFDADGVDAIYSESFETPRMGQAIMNRLIKAAG 344


>gi|256545368|ref|ZP_05472731.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus vaginalis ATCC
           51170]
 gi|256398929|gb|EEU12543.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus vaginalis ATCC
           51170]
          Length = 345

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 175/331 (52%), Gaps = 23/331 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-D 66
           D N L  A E +  G  +A PTETVYGL  D  NP A +++++ K RP  NPLI H+  D
Sbjct: 14  DENILNHAAEIIKKGELVAFPTETVYGLGADGLNPKAAKKIFKAKNRPEDNPLILHIDED 73

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + +    VD  +  L K  WPGPLT++L   S   I  + T    T   R P     +
Sbjct: 74  YKLDELVEKVDDRTKFLIKNLWPGPLTVILKKSSI--IPDIITGGGDTVAVRRPKDKLAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I+    P+A PSAN SG+ S TN K +    +   IPLIIDGG S IG+EST++++  
Sbjct: 132 EFIKYCNTPIAAPSANISGRPSPTNAKDVY-YDMNGRIPLIIDGGSSDIGIESTVIDMSL 190

Query: 186 EKKVRILRPGGLEIETLKRAI-SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL----R 239
           E    ILRPG    E +K+ I +V L +  VD++  P+SPG    HYAP++++++    +
Sbjct: 191 ENPC-ILRPGYYTYEYIKKFIPNVCLDDSLVDDSKVPRSPGQKYKHYAPKAEMKVFVGDK 249

Query: 240 AIHVNPREALIRFGN--------VPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIA 289
           ++    ++  +++ N        V  K+ E  ++  +L+L     L E +  LF  ++  
Sbjct: 250 SVE-KIKDLALKYKNEGKKVGILVFDKDTEKFSSFTTLSLGNKDNLIEMSHVLFEALRDL 308

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D      I    + + GLG +I NR++++A+
Sbjct: 309 DRKNVDIILAEGVKDIGLGKSIMNRMKKSAS 339


>gi|147679163|ref|YP_001213378.1| putative translation factor [Pelotomaculum thermopropionicum SI]
 gi|146275260|dbj|BAF61009.1| putative translation factor [Pelotomaculum thermopropionicum SI]
          Length = 385

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 27/338 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++ A+R+A   L  G  +A PTETVYGL  ++ +  A+ R++E K RP+ NPLI HV+  
Sbjct: 44  EAEAVREAGLILRGGGLVAFPTETVYGLGANALDGKAVARIFEAKGRPSDNPLIVHVAAA 103

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V      +   +  L ++FWPGPLTLVL   +   +    TA L T   R+P      
Sbjct: 104 EEVGALVRGISDRARLLMEIFWPGPLTLVLP--AGKAVPAGVTAGLDTVAVRMPDHPVAA 161

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T  +H+L   +   I  I+DGG + +G+EST+++V  
Sbjct: 162 ALIRAAGVPVAAPSANISGRPSPTTAEHVL-QDLNGRIEAILDGGPAGLGVESTVLDVTV 220

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTP-----QSPGMLKSHYAPRS----- 234
              + ILRPGG+  E L+  + +VE++              +SPGM   HYAPR+     
Sbjct: 221 PVPL-ILRPGGVTPEELREVLGTVEVDPSAAAGLGKAAGRYRSPGMKYIHYAPRAPLVLI 279

Query: 235 -------QVRLRAIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFN 284
                    ++R +    + A  R G +      +  +A + +   + GK +  A  L+ 
Sbjct: 280 EGRPDAVAAKIRELAGEQQAAGRRVGILTYADSGDFSSAGVVVLAGQRGKPETVAAGLYA 339

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            ++  D+ G   I    +   G+G+A+ NRL +AA  R
Sbjct: 340 ALRRFDELGVDLILAEGVEEGGVGLAVMNRLRKAAGGR 377


>gi|297588759|ref|ZP_06947402.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516]
 gi|297574132|gb|EFH92853.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516]
          Length = 342

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 165/327 (50%), Gaps = 23/327 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL KA + +  G  +A PTETVYGL  +  +  A ++++++K+R   NPLI HV++  MV
Sbjct: 16  ALEKAADLIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEEMV 75

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +  +S +      L    WPGPLT++     +  ++ + +    T   R P     + LI
Sbjct: 76  RNLSSEITEDQKKLMDNLWPGPLTIIFK--KSDKVNDVVSCGGNTVAIRNPSDEIARFLI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+A PSAN+SG+ S TN + +  S +  EI +I+DGG   IG+EST+V++  EK 
Sbjct: 134 DKSDCPIAAPSANKSGRPSPTNAQDVY-SDMQGEIEMILDGGSCNIGIESTVVDL-TEKP 191

Query: 189 VRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRS----------- 234
             ILRPG    E L+  +  E+ Y    +D  + P+SPG    HYAP++           
Sbjct: 192 YTILRPGFYTKEDLEEYLD-EVVYDKSLIDSKTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250

Query: 235 -QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
            Q  + ++ +N  E          +N+    + + +SK       A N+F Y++  D   
Sbjct: 251 IQNYVDSLEINTDEIGFILTEETAQNVNFKNVKI-ISKRNDYLNFAHNIFAYLRELDKLN 309

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              +    +    +GI+I NRL+++ A
Sbjct: 310 YKLLICEGVNEQKMGISIMNRLKKSCA 336


>gi|312877224|ref|ZP_07737193.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796033|gb|EFR12393.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 348

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 163/335 (48%), Gaps = 27/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI HVS  
Sbjct: 12  DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIIHVSSK 71

Query: 68  SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
            M++  A + D     L + FWPGPLT+V   L   D+ P + TA L T   R+P     
Sbjct: 72  DMLEMCAEITDERVYMLIERFWPGPLTIV---LPKKDVIPENVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  KH++   + K + +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSGIPVAAPSANVSGKPSPTEAKHVIEDLMGK-VDVIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAP-------R 233
            EK V ILRPG +    LK  +  +E    V E  T   P+SPGM   HYAP       +
Sbjct: 188 GEKAV-ILRPGAISYFALKEVLGDIEYSKSVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------KEAAFNLFNY 285
            ++  R   +N  +  + F    +  +     + N     KL        KE   NLF+ 
Sbjct: 247 GRIDKRIDKINEMKKKLEFKGYNVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSI 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  +  G   I           +A+ NRL +AAA
Sbjct: 307 LRKFNQLGVDYILCEWGEFDLEFLALENRLYKAAA 341


>gi|58337082|ref|YP_193667.1| Sua5 family translation factor [Lactobacillus acidophilus NCFM]
 gi|227903650|ref|ZP_04021455.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidophilus ATCC
           4796]
 gi|58254399|gb|AAV42636.1| putative translation factor SUA5 family [Lactobacillus acidophilus
           NCFM]
 gi|227868537|gb|EEJ75958.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidophilus ATCC
           4796]
          Length = 334

 Score =  145 bits (367), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 161/334 (48%), Gaps = 30/334 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + L  A E L  G  +A PTETVYGL   +    ++R +Y  K RP+ NPLI  VS
Sbjct: 6   IFKKDQLDDAVELLAKGELVAFPTETVYGLGAIATKEDSVRGVYAAKGRPSDNPLIVTVS 65

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D  M++++A   P  +  L K FWPGPLT++L  +    +    T  LKT  FR P    
Sbjct: 66  DEKMMERYAKEVPERAKKLIKHFWPGPLTILL-FVKPNTLPDAVTGGLKTVAFRCPDDSL 124

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI+++
Sbjct: 125 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLESTIIDL 183

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236
             E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   V    
Sbjct: 184 SVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDVPKAPGMKYRHYAPSEPVIVVD 242

Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287
                  I+ N +          +  +E+ + +++L    K      L +A  NLF  ++
Sbjct: 243 DPADFSKINFNEKTG--------VAALESVLANIDLPDENKFNLGNDLVDADHNLFGSLR 294

Query: 288 IADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320
             DD     +I           +A  NRL +AA 
Sbjct: 295 YFDDKDNVETIYVQGFDEGEESLAYMNRLNKAAG 328


>gi|203284630|ref|YP_002222370.1| hypothetical protein BDU_738 [Borrelia duttonii Ly]
 gi|201084073|gb|ACH93664.1| uncharacterized conserved protein [Borrelia duttonii Ly]
          Length = 334

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 170/333 (51%), Gaps = 27/333 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +   + + KA +F+++G  +  PTETVYG+  ++ +  AIR L+ +KKRP  NPLI HV
Sbjct: 4   EVIKESEIEKAVKFINSGELVVFPTETVYGIGANAYDENAIRMLFIVKKRPITNPLIVHV 63

Query: 65  SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             I  +K+     P S + L K F PGP+T +L   +   I  L    L++   R+P   
Sbjct: 64  ESIEKIKELVEYIPDSAMILMKKFTPGPITFILK--NAGKISKLINGGLESIAVRIPSDP 121

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-----GISKIGLE 177
              KLI+    P+A PSAN S + S TN +  +     KE+  ++ G      +S+IG+E
Sbjct: 122 IALKLIKMSKVPIAAPSANLSKRPSATNFEMAI-----KELNGLVKGIIQKNEVSQIGIE 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST+++   +  V ILRPG +  E ++R ++    +EY + +    QSPG L  HY PR  
Sbjct: 177 STVISFDAKSNVSILRPGSITKEMIERELNGKFNVEYSLGKKILQQSPGNLLEHYRPRIP 236

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT---------GKLKEAAFNLFNYM 286
           V L     N R+ + R  +  I  ++N I S   +K            L+E A N++   
Sbjct: 237 VYLFRQKDNIRKYISR-QDTKILIMKNTIKSYWFNKLWNTNHICVFNTLEEYAKNIYKVF 295

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            +  +     I    + N+ LG +INNRL++A+
Sbjct: 296 -VESERTHKQILAEFVDNNQLGYSINNRLKKAS 327


>gi|315038004|ref|YP_004031572.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1112]
 gi|325956457|ref|YP_004291869.1| Sua5 family translation factor [Lactobacillus acidophilus 30SC]
 gi|312276137|gb|ADQ58777.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1112]
 gi|325333022|gb|ADZ06930.1| Sua5 family translation factor [Lactobacillus acidophilus 30SC]
 gi|327183284|gb|AEA31731.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1118]
          Length = 333

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 164/334 (49%), Gaps = 30/334 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + L +A + L  G  +A PTETVYGL   + N  +++ +Y  K RP+ NPLI  +S
Sbjct: 5   IFKKDQLDEAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPLIVTIS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M++++A   P  +  L K FWPGPLTL+L  +    +    T  LKT  FR P    
Sbjct: 65  DEKMMERYAKEVPERAKTLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLKTVAFRCPDDQL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI+++
Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236
             +  + +LRPG +  E L + +  ++      V +   P++PGM   HYAP   V    
Sbjct: 183 SVKTPI-VLRPGEITPEELSKVLGEKVLINTGKVSDKDVPKAPGMKYRHYAPSEPVIVVD 241

Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287
                  I  N +  +   G++        +  ++LS   K      L +A  NLF  ++
Sbjct: 242 NPADFAKIDFNEKTGVAALGSI--------LAKIDLSDDNKFDLGENLVDADHNLFGALR 293

Query: 288 IADDSGASSIAFSSIPNHG-LGIAINNRLERAAA 320
             DD       +    N G   +A  NRL +AA 
Sbjct: 294 YFDDKDNIETIYVQGFNEGEESLAYMNRLNKAAG 327


>gi|168185917|ref|ZP_02620552.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum C str.
           Eklund]
 gi|169296125|gb|EDS78258.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum C str.
           Eklund]
          Length = 350

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 170/337 (50%), Gaps = 31/337 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + ++ E +  G  +  PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DEKVMEESGEIIRNGGLVVFPTETVYGLGANALDSEAVKKIFVAKGRPQDNPLIVHIADF 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
           +M     S+ P++  +   FWPGPLT+++    +  +  +++A L +   R+P     ++
Sbjct: 74  NMNDLVNSIPPIAEKIINKFWPGPLTVIMK--KSPKVPDVTSAGLDSIGIRMPSNLVARE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ S TN++  +   +  ++  II G    +GLESTIV+   E
Sbjct: 132 LIKKAGVPIAAPSANISGKPSPTNIERCI-EDLDGKVESIIGGEKCDVGLESTIVDCTVE 190

Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
               ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ V++ A 
Sbjct: 191 PPC-ILRPGGITLEMLKEVHPDIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVKIIAG 249

Query: 242 HVNPREALIRFGNVPIKNI--ENAIISL----------------NLSKTGKLKEAAFNLF 283
           ++    A I   N  ++N   ++ I+ +                +L     L   A NLF
Sbjct: 250 NLEKSIAKI---NEMVQNYIDDDKIVGIMSTDEHVNSYSHATVKSLGSRKDLHSIAHNLF 306

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             +   D      I   +     +GIAI NRL++AA 
Sbjct: 307 KVLSEFDSEKVDIILSEAFEEEEIGIAIMNRLKKAAG 343


>gi|163789458|ref|ZP_02183897.1| Sua5/YciO/YrdC/YwlC family protein [Carnobacterium sp. AT7]
 gi|159875312|gb|EDP69377.1| Sua5/YciO/YrdC/YwlC family protein [Carnobacterium sp. AT7]
          Length = 341

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 164/325 (50%), Gaps = 21/325 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-SMVKK 72
           KA   L  G  I+ PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS I  + + 
Sbjct: 15  KAALKLQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVSAIEEVEQY 74

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
              V  ++  L + FWPGPLTL+  +       P +TA L +   R+P    T +LI   
Sbjct: 75  VVEVSEVASKLMETFWPGPLTLIFKVKEQA-FAPTATAGLDSVAMRMPDNALTLQLIRET 133

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL  PSAN SG+ S T   H+    +  +I  ++D G + +GLEST+++V    +  I
Sbjct: 134 GKPLVGPSANTSGKPSPTTAGHVF-HDLKGKIAGVLDDGETGVGLESTVLDVTDPVRPTI 192

Query: 192 LRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL---------RA 240
           LRPG    E L++ I       + +     P++PGM   HY+P   V +         +A
Sbjct: 193 LRPGATTKEALEQIIGTVYVDRHLISSDEVPKAPGMKYKHYSPNEAVVIVDGNHDVWQKA 252

Query: 241 IHVNPREALIRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           I    ++   + G +  + I     +N   + +L +   + +AA  L++ ++  + + A+
Sbjct: 253 IETYQKQGE-KVGLLAEQAIVDHFQKNVSATYSLGENKNVNDAARLLYSGLRYFEKTTAT 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I   +    GLG A  NRL++AA 
Sbjct: 312 VILAQAYAEKGLGEAYMNRLKKAAG 336


>gi|169335782|ref|ZP_02862975.1| hypothetical protein ANASTE_02207 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258520|gb|EDS72486.1| hypothetical protein ANASTE_02207 [Anaerofustis stercorihominis DSM
           17244]
          Length = 340

 Score =  145 bits (366), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 181/326 (55%), Gaps = 32/326 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   ++AG  +  PTETVYGL  ++ +  A++++++ K RP+ NPLI H+SD+ M+    
Sbjct: 21  AASVINAGGTVVFPTETVYGLGANAYDDEAVKKIFKAKNRPSDNPLIVHISDLDMIDDLV 80

Query: 75  S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPC-----GFTKKL 127
           + +   +  L   F+PGPLTL++   S     P S +N L T   R+P      GF    
Sbjct: 81  TCISDDARKLMSKFFPGPLTLIMKKSSKV---PNSVSNGLDTVGIRMPSDKEANGF---- 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN S + SITN K+++   +  ++ +I+    S IGLEST+++V  + 
Sbjct: 134 IKACGVPIAAPSANISKRPSITNKKYLV-EELSGKVDMILCSKNSSIGLESTVLDVSSD- 191

Query: 188 KVRILRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           KV++LRPG +  E +++ I  ++  Y  ++   P+SPGM   HY P+++V +  ++ N +
Sbjct: 192 KVKLLRPGKISAEDIEKVIGKKVYGYNGEDALLPKSPGMKYEHYKPKTKVVV--LNGNDK 249

Query: 247 EALIRF---------GNVPIKNIENAIIS--LNLSKTGK-LKEAAFNLFNYMKIADDSGA 294
            ++I +         G + + NI   I +  + L   GK + +A+ NL+  ++  D    
Sbjct: 250 -SIINYLNDIKADDAGFIGLDNITQKIGNKKIKLKSFGKDISDASRNLYYLLREMDSENL 308

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I   ++ + G+G+A  NRL +AA+
Sbjct: 309 DIIYVQAMDSRGIGLAYMNRLLKAAS 334


>gi|153812520|ref|ZP_01965188.1| hypothetical protein RUMOBE_02919 [Ruminococcus obeum ATCC 29174]
 gi|149831445|gb|EDM86533.1| hypothetical protein RUMOBE_02919 [Ruminococcus obeum ATCC 29174]
          Length = 354

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/238 (37%), Positives = 138/238 (57%), Gaps = 12/238 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D +A++KA + L AG  +A PTETVYGL  ++ +P A  ++Y  K RP+ NPLI H++++
Sbjct: 14  DMDAIKKAGDILKAGGLVAFPTETVYGLGGNALDPQASMKIYAAKGRPSDNPLIVHIAEL 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             ++K  +  P     LA+ +WPGPLT++   L   DI P  +T  L +   R P     
Sbjct: 74  EQLEKITTEIPEGAKILAEKYWPGPLTMI---LPKADIVPRETTGGLDSVAVRFPSDRIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++LI+  G  +A PSAN SG+ S T  +H+    +   I +IIDGG   IGLESTIV+  
Sbjct: 131 QELIKAGGGFVAAPSANTSGRPSPTMAEHV-EEDLGDAIDMIIDGGQVGIGLESTIVDF- 188

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELE---YCVDETSTPQSPGMLKSHYAPRSQVRL 238
            EK   +LRPG + +E L+  +  V ++      D +  P++PGM   HYAP++ + +
Sbjct: 189 TEKVPVVLRPGYISLEMLQETLGDVRMDKGLLITDSSVHPKAPGMKYRHYAPKADLSI 246


>gi|134080269|emb|CAK97172.1| unnamed protein product [Aspergillus niger]
          Length = 397

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 178/360 (49%), Gaps = 53/360 (14%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ A+  A + L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HV  
Sbjct: 39  EAAAIEDAAQLLRTSDIPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIIHVDS 98

Query: 67  ISMVKK----------------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           + M+++                  ++ P+   +   FWPGPLT++L   S + + P  T+
Sbjct: 99  LGMLERLLNPTQESPSRRTSTAKNAIPPIYDSVISRFWPGPLTILLPNPSGSPLAPEVTS 158

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   R+P     + LI     PLA PSAN S + S T  +H+    +   I LI+DG
Sbjct: 159 KLTTFGVRMPSSPLARLLIHVTDRPLAAPSANASTKPSPTAAEHVF-HDLEGRIELILDG 217

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSP 223
           G   +G+EST+V+   +    ILRPGG+ IE L+      +V++ Y    +D    P++P
Sbjct: 218 GPCGVGVESTVVDGLSDPPA-ILRPGGIGIEELRTCAGWENVQVGYHDGTLDVKEIPRAP 276

Query: 224 GMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNL--------SKTGKL 275
           GM   HY+P+++V L     +  EA+ R      K++E++ I  ++         K G  
Sbjct: 277 GMKYRHYSPKARVVLFEAGSD-EEAVTRHIR---KDLEDSAIGAHMIGVVRTQHWKRGTA 332

Query: 276 KEAAFN-------------LFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAAA 320
            +  F+             LF+ ++  D+     I    +P+H   L  A+ NRL +AA 
Sbjct: 333 TKETFDCHLGTDVKSIAQGLFSALRAMDEMEVDVIYVEGVPDHQGDLAAAVMNRLRKAAG 392


>gi|153816408|ref|ZP_01969076.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756]
 gi|317502463|ref|ZP_07960626.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089289|ref|ZP_08338191.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846243|gb|EDK23161.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756]
 gi|316896148|gb|EFV18256.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405841|gb|EGG85370.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 507

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 172/359 (47%), Gaps = 55/359 (15%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L  G  +A PTETVYGL  D+    A  + Y  K RP+ NPLI H+++   ++
Sbjct: 18  IEEAGMILKNGGLVAFPTETVYGLGADALKEEAAMKTYAAKGRPSDNPLIVHIAEYEDLR 77

Query: 72  K-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
           K      A  D L+ H    FWPGPLT++ +    +++ P  +T  L T   R+P     
Sbjct: 78  KIAVNIPAETDALAAH----FWPGPLTMIFE---KSEVVPYGTTGGLDTVAVRMPTDEVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G  ++ PSAN SG+ S T  +H+ +  +  +I +I+DGG  +IGLESTI+++ 
Sbjct: 131 RALIRAAGGFVSAPSANTSGRPSPTLAEHV-AEDLGGKIDMILDGGAVEIGLESTILDMT 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVR 237
               + ILRPG +  E  +  I    +  VDET         P++PGM   HYAP++  +
Sbjct: 190 VTPPM-ILRPGAITAEMFEEVIG---KVDVDETLLVAESEKAPKAPGMKYRHYAPKA--K 243

Query: 238 LRAIHVNPREALIRFGNVPIKNIENA--------IISLNLSKTGKLKE---------AAF 280
           L  +  + RE +     +  K  +            +L   K G +K           A 
Sbjct: 244 LMIVEGDLREEIFAIRQLAYKAYKEGRKVGVIATTETLPFYKYGVVKNIGTRENEKTIAR 303

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA----------APRNQSQRIV 329
           NL+  ++  D+     I   S    G+G AI NRLE+AA          A R + +RI+
Sbjct: 304 NLYRVLREFDEEDVEEIYSESFAAQGIGKAIMNRLEKAAGHTRLSAAEIAKRQKYRRII 362


>gi|254566675|ref|XP_002490448.1| Protein required for respiratory growth [Pichia pastoris GS115]
 gi|238030244|emb|CAY68167.1| Protein required for respiratory growth [Pichia pastoris GS115]
          Length = 377

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 160/320 (50%), Gaps = 27/320 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-----ASVDPL 79
           I  PTETVYGL   S N  +++ +Y  K RP  NPLI HV+ +S + +        +  +
Sbjct: 51  IGFPTETVYGLGASSLNDESVKSIYIAKNRPLDNPLITHVASLSQLHRKILPPSTKIPDI 110

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
            L L K FWPGPLT++L +   T +  L+TA   T   R+P     + LI     PLA P
Sbjct: 111 YLPLIKKFWPGPLTILLPVEDDTTLSRLTTAGQDTFAVRIPNHPVARALIAISDEPLAAP 170

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN S + S T  +H+    +   IPLIIDGG S +GLES++VN      + +LRPGG+ 
Sbjct: 171 SANASTRPSPTLAEHVY-HDLQGRIPLIIDGGPSNVGLESSVVNGLTNPPM-LLRPGGIS 228

Query: 199 IETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP----REAL 249
           ++ ++         V  +   + +   ++PGM   HY+P ++V L     N     +EAL
Sbjct: 229 LKQIQEVGHGWEDIVTAKKTANASEPVRTPGMKYKHYSPTAKVILFVKCGNGVKAVQEAL 288

Query: 250 IRFGNVPIKNIENAIISLNLSKTGK----------LKEAAFNLFNYMKIADDSGASSIAF 299
            R+ N  I  +  +   +  +   +          + E A NLF  ++  D +    I  
Sbjct: 289 SRYPNSKIALLTGSEFEIPETLQAQFAIVDHLGSSITEMAHNLFAKLRNLDKNDMDYIFI 348

Query: 300 SSIPNHGLGIAINNRLERAA 319
             +P+ G G+A+ NRL +AA
Sbjct: 349 EGVPDAGEGLALMNRLSKAA 368


>gi|303230732|ref|ZP_07317479.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514492|gb|EFL56487.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 344

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 169/342 (49%), Gaps = 33/342 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I  +T  N L+     L  G  +AIPTETVYGL  +  +  A+ ++Y  K RP+ NPLI 
Sbjct: 6   ITELTRDN-LQLVAHALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDNPLIL 64

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP 120
           HV +   +K      P +   L + FWPGPLT+    L  +D+ P  +T  L     R P
Sbjct: 65  HVPNAESIKPLVKEIPETAKALIEAFWPGPLTIT---LPKSDLVPDRATGGLARVALRCP 121

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + ++E  G P+A PSAN SG+ S T  + +    +   IP I+D GI  IG+EST
Sbjct: 122 DHAVCRNILELAGVPIAAPSANISGRPSPTTAQSVY-DDMNGRIPYIVDAGICTIGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVR 237
           +V V+ +  V ILRPGG+  E L++ + +V  + +   +   P++PGM   HYAP +   
Sbjct: 181 VVEVR-DDGVTILRPGGITKEMLEQVVDNVSYDPFLSSQNEAPKAPGMKYKHYAPDAP-- 237

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSK-------------------TGKLKEA 278
           +RA   NP++    F NV I+  E    +  +S+                   +G     
Sbjct: 238 MRAFIGNPKDVAETFSNV-IREQETKRGAFLISQETYELLKDSVHGEFHVYGHSGDAVAL 296

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           A + +  +   ++     I    + N GLG+A+ NR+E+A A
Sbjct: 297 AHDFYKTLHHFNECDVDYILAEGVENTGLGVAVMNRMEKACA 338


>gi|37678973|ref|NP_933582.1| putative translation factor [Vibrio vulnificus YJ016]
 gi|37197715|dbj|BAC93553.1| putative translation factor [Vibrio vulnificus YJ016]
          Length = 328

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 28/327 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  +   + +A E L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI H
Sbjct: 14  LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 73

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           +  +  +   A   P   + LA+ +WPGP+TL+L       + P+ T  L+T   R+P  
Sbjct: 74  IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLK--KAPHVTPVVTGGLETIGIRMPAH 131

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L+++ G  +A PSAN   ++S T+ KH++ +S+  +I  ++DGG    GLESTIV
Sbjct: 132 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVM-NSLGGKIAAVLDGGDCAHGLESTIV 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRSQV 236
           ++  EK  RILR G +    L   +        +E S+P S     PG + SHY P ++V
Sbjct: 191 DL-TEKPFRILRTGPVTAAQLSATLG-------EEVSSPVSHNVAVPGNVTSHYQPNTRV 242

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-----LKEAAFNLFNYMKIADD 291
           RL    V   + L   G+  I  +     +   +  G+     + E + +L+  +  AD 
Sbjct: 243 RL----VQASD-LALVGDKKIAYLHYTPFTAQENVEGRQMPSSVAEYSHDLYRTLDEADK 297

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318
            G   I     P      A+++RL RA
Sbjct: 298 WGCEEIWVERPPVTESWFAVHDRLNRA 324


>gi|317471145|ref|ZP_07930516.1| Sua5/YciO/YrdC/YwlC family protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901360|gb|EFV23303.1| Sua5/YciO/YrdC/YwlC family protein [Anaerostipes sp. 3_2_56FAA]
          Length = 351

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/237 (38%), Positives = 133/237 (56%), Gaps = 11/237 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  A+R+A   L  G  +A PTETVYGL        A  R+YE K RP+ NPLI H+  +
Sbjct: 16  NKEAIREAAGLLREGKLVAFPTETVYGLGGSGWMEEAASRIYEAKGRPSDNPLILHIGSM 75

Query: 68  SMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
            M+ +  S  P     A   FWPGPLT++   L  +D  P   T  L +   R+P     
Sbjct: 76  EMIDEITSCVPGPAKKAMDAFWPGPLTVI---LPKSDKVPYRVTGGLDSVAVRMPSHPAA 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L+   G P+A PSAN SG+ S T  +H++   +  +IP+++DGG  ++G+ESTIV+  
Sbjct: 133 LALLREAGVPVAAPSANTSGRPSPTKAEHVV-EDLDGKIPMVLDGGKVEVGVESTIVDFT 191

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRL 238
            E  V ILRPG +  + L++A+S E+      V E + P++PGM   HYAP++Q+ L
Sbjct: 192 GEVPV-ILRPGKITKDELEKALSTEVLMSTLSVKEDTVPRAPGMKYKHYAPKAQLVL 247


>gi|255993957|ref|ZP_05427092.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saphenum ATCC
           49989]
 gi|255993625|gb|EEU03714.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saphenum ATCC
           49989]
          Length = 339

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 133/242 (54%), Gaps = 18/242 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + KA   +  G  +A PTETVYGL  ++ +P AI ++Y+ K RP+ NPLI H+SDI
Sbjct: 9   DKEGMEKAANIIRTGGTVAFPTETVYGLGANALDPDAIEKIYKAKGRPSDNPLIVHISDI 68

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S ++  AS VD   L +A  FWPGPLTLV     + DI    T  L T   R+P     +
Sbjct: 69  SELQGVASDVDKHILAIANEFWPGPLTLVCK--KSADIPDQVTGGLDTVAVRMPSSSIAR 126

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I + G P+A PSAN+SG+ S T+  H++   +  +I  +I G  S IG+EST+++V  
Sbjct: 127 EFIRSAGVPIAAPSANKSGKPSPTSTSHVI-DDLNGKIDAVIMGDDSDIGIESTVISVTG 185

Query: 186 EKKVRILRP---GGLEIETLKRAISVELEYCVDETST---------PQSPGMLKSHYAPR 233
             KV +LRP   G +EI         +L    D +++         P+SPG+   HY+P 
Sbjct: 186 -GKVNVLRPGVIGEVEIRGCLEKSGYKLSSGFDGSASDERKSMKDVPKSPGVKYKHYSPN 244

Query: 234 SQ 235
            +
Sbjct: 245 CE 246


>gi|327401143|ref|YP_004341982.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6]
 gi|327316651|gb|AEA47267.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6]
          Length = 317

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 170/320 (53%), Gaps = 37/320 (11%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E +  G  +A PTETVYGL  D+ N  A+RR++E K+RP  NPLI HVS +  V + 
Sbjct: 18  RAAEIIKKGGLVAFPTETVYGLGGDALNENAVRRIFEAKERPPRNPLIVHVSSVEQVYRI 77

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP---CGFTKKLIE 129
           A V+ ++  L   F+PGPL LV   L   D+ P ++TA +K    R+P      T  LIE
Sbjct: 78  AEVNEVAEKLMGEFFPGPLALV---LKKKDVVPDITTAGMKKVAVRMPDHKVALT--LIE 132

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T  +H++   +   I  I+D G  KIG+EST+++V   K  
Sbjct: 133 LSETPIAAPSANISGRPSPTKAEHVI-EDLAGRIDAILDAGEVKIGIESTVLDVTS-KPA 190

Query: 190 RILRPGGLEIETL-KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           +ILR G +  E L +R I VE+   +D  + P        HY  +++     ++V   E 
Sbjct: 191 KILRLGAITPEMLVERGIEVEV---ID--TRPF------RHYQTKAK-----LYVVNAEN 234

Query: 249 LIRF-GNVPIKNIENAIISLN-------LSKTGK-LKEAAFNLFNYMKIADDSGASSIAF 299
           L  F G++  K ++  +  +        + + GK +++ A NLF+ ++  D SG   I  
Sbjct: 235 LAEFVGSLREKGVKVGVARITAECDADRIVELGKSIEDVAKNLFSALRELDRSGVDIIVV 294

Query: 300 SSIPNHGLGIAINNRLERAA 319
            ++   GLG  I ++LE A 
Sbjct: 295 EAVERKGLGKVIMSKLEEAG 314


>gi|313631919|gb|EFR99062.1| protein Sua5 [Listeria seeligeri FSL N1-067]
          Length = 303

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 167/305 (54%), Gaps = 19/305 (6%)

Query: 38  DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVL 96
           D+ N  AI+++YE K RP+ NPLI H++    +    AS    ++ L + FWPGPLT++L
Sbjct: 2   DATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFVASYPQKAIKLMEKFWPGPLTVIL 61

Query: 97  DLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
            L   +    +S A L T   R+P    +  LI+  G P+A PSANRSG+ S T+  H++
Sbjct: 62  PLKKDSLASNVS-AGLSTVGVRMPDHPVSLALIKEAGIPVAAPSANRSGKPSPTSASHVI 120

Query: 156 SSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVEL-EYC 213
              +  ++  IIDGG + +GLEST+++   E  V ILRPGG+  E +++ I SVEL    
Sbjct: 121 -EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV-ILRPGGITKEQIEQVIGSVELANND 178

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL----RAI---HVNPREAL-IRFGNVPIKNIENAII 265
             ET  P++PGM  +HYAP++ V L    +A     +N  EA   + G +  K + + + 
Sbjct: 179 TKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQKEINKVEAAHKKLGILATKELLDGLT 238

Query: 266 SLNLSKTG----KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  +++T      ++E A  L+  ++  D +    I     P   LG A+ NRLE+AA  
Sbjct: 239 TNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDIIFAEVYPETELGAAVMNRLEKAAGN 298

Query: 322 RNQSQ 326
           R  S+
Sbjct: 299 RRISE 303


>gi|295109526|emb|CBL23479.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus obeum A2-162]
          Length = 354

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 175/345 (50%), Gaps = 31/345 (8%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI+++T    D +A+++A + L AG  +A PTETVYGL  ++ +P A  ++Y  K RP+ 
Sbjct: 4   QIVAMTSENLDMDAIKRAGDILKAGGLVAFPTETVYGLGGNALDPQASMKIYAAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTA 115
           NPLI H+++   + +  +  P     LA+ +WPGPLT++   L   DI P  +T  L + 
Sbjct: 64  NPLIVHIAEADQLAEITTEIPQGAKILAEKYWPGPLTMI---LPKADIVPKETTGGLDSV 120

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R P     ++LI+  G  +A PSAN SG+ S T  +H+    +   I +IIDGG   I
Sbjct: 121 AVRFPSDRIAQELIKAAGGFVAAPSANTSGRPSPTMAEHV-EEDLGDAIDMIIDGGQVGI 179

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELE---YCVDETSTPQSPGMLKSHY 230
           GLESTIV+   +  V +LRPG + ++ LK  +  V ++      D +  P++PGM   HY
Sbjct: 180 GLESTIVDFTEDVPV-VLRPGYISLQMLKETLGDVRMDRGLLITDNSVHPKAPGMKYRHY 238

Query: 231 APRSQVR------------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278
           AP++ +             +  +     +  ++ G +     ++     ++   G  +E 
Sbjct: 239 APKADLSIVEGTEAQVIDCINRLSAEAEKKGLKVGVIATNETKDRYAHADVFSIGSREEE 298

Query: 279 ---AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              A +L+  ++  DD     I   +     +G AI NRL +AA 
Sbjct: 299 ETIAHHLYEVLRSFDDDRVDLIYSEAFYTPRMGQAIMNRLLKAAG 343


>gi|304438783|ref|ZP_07398711.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372785|gb|EFM26363.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 354

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 160/332 (48%), Gaps = 30/332 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++    L  G  +  PTETVYGL  +  N  A++ +Y  K RP+ NPLI H++D+ M+ 
Sbjct: 17  IKEVASALRDGKLVVFPTETVYGLGGNGLNEDALKNIYVAKGRPSDNPLILHIADLDMLD 76

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P     L   FWPGPLTL+ +  S   +   +T  L T   R+P       +++
Sbjct: 77  TLVRDIPKDAKLLIDKFWPGPLTLIFNRKSI--VPDRATGGLDTVAIRMPSDKVAHAILK 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T+  H++   +   +  I+D   S +G+EST+V++     +
Sbjct: 135 EAKVPVAAPSANLSGKPSPTSTAHVI-EDLDGRVDYIVDSTRSFVGIESTVVDMTVNPPM 193

Query: 190 RILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVRLRAIH 242
            ILRPG +  E LK  I    + C D T       S P+SPG    HYAP +        
Sbjct: 194 -ILRPGYITYEDLKSVIP---DVCYDNTTIDKDDKSVPKSPGQKYRHYAPSANCYTYVGD 249

Query: 243 VN--------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           VN               ++  +   +  +K IE  ++ L+L     L +A+ NLF  +++
Sbjct: 250 VNLVRDKIKEEINKNKDKKICVIATDRVLKEIEEDVLKLSLGSGEDLLDASHNLFYNLRV 309

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ADD+    I        GLG+ I NRL +A++
Sbjct: 310 ADDNDVDIIFCEGFEQVGLGVGIMNRLTKASS 341


>gi|291548235|emb|CBL21343.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus sp. SR1/5]
          Length = 364

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 170/339 (50%), Gaps = 35/339 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +  E L  G  +A PTETVYGL  ++ +P A  ++Y  K RP+ NPLI H++DI
Sbjct: 18  DRKAIARGGEILKNGGLVAFPTETVYGLGGNALDPKASMKIYAAKGRPSDNPLIVHIADI 77

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             + K  +  P     LA+ +WPGPLT++   L   DI P  +T  L +   R P     
Sbjct: 78  RDLDKIVTEVPEKARILAEKYWPGPLTMI---LPKADIVPKETTGGLDSVAVRFPSDPIA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++LI   G  +A PSAN SG+ S T   H+ +  + + I +IIDGG   IGLESTIV+  
Sbjct: 135 QELILAAGGYVAAPSANTSGRPSPTTAGHV-AEDLGEAIDMIIDGGQVNIGLESTIVDFT 193

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240
            +  V +LRPG + +E L+  +  V ++  +   D    P++PGM   HYAP++ +   A
Sbjct: 194 EDIPV-VLRPGYISLEMLRETLGDVRMDKGLIKPDSKVHPKAPGMKYRHYAPKADL---A 249

Query: 241 IHVNPREALI-----RFGNVPIKNIENAIISLNLSKTGKLKEA--------------AFN 281
           I     E +I     R G    K +   II+ + +K G+                  A +
Sbjct: 250 IVEGSTEGVIAEIEKRAGEAEEKGLTVGIIATDETK-GRYSHGIVKSIGSREQEETIAHH 308

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L+  ++  D    S+I   +     +G AI NRL +AA 
Sbjct: 309 LYEVLRDFDSCNVSAIYSEAFFTPRMGQAIMNRLLKAAG 347


>gi|148658404|ref|YP_001278609.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus sp. RS-1]
 gi|148570514|gb|ABQ92659.1| translation factor SUA5 [Roseiflexus sp. RS-1]
          Length = 356

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 168/346 (48%), Gaps = 38/346 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++ +   + +A   + AG  +A PTETVYGL   + +  A+ R++  K+RPA +P+I H+
Sbjct: 15  AVPEPQIIAEAAAVIRAGGLVAFPTETVYGLGASALDEQAVARIFHAKERPATDPIIAHI 74

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK----TACFRV 119
           +D+  +   A  V P +  LA+ FWPGPLTLV+         P+  ANL     T   R+
Sbjct: 75  ADLCQLDVLARDVPPAAHALARRFWPGPLTLVVLR------RPIVPANLSAGRATVAVRM 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       LI   G P+A PSANR  + S T   H+L   +   I L++DGG + IG+ES
Sbjct: 129 PAHPVALALIAASGVPIAAPSANRFSRPSPTTAAHVL-DDLNGRIDLVLDGGATHIGVES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPR 233
           ++V++  +  V +LRPGG+ I  L+  +  EL +       DE + P +PGML  HYAP 
Sbjct: 188 SVVDLTVDPPV-LLRPGGVTITALREVLP-ELTFAPRYLAGDEEALP-APGMLLRHYAPN 244

Query: 234 SQV------------RLRAIHVNPREALIRFGNVPIKNIENAIISL-----NLSKTGKLK 276
           + +            R+RA       A +R G +       A+  L      L      +
Sbjct: 245 ATLTVVAGDHAAALERIRAEAQAAINAGLRVGVLAFDEDAPALADLPVRIVQLGPAANPE 304

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             A  LF  ++  + +G   I        GL + I +RL RAA  R
Sbjct: 305 VVAQRLFAALRAIEQTGVDLILARDPGQEGLSLTIRDRLVRAAEGR 350


>gi|19075544|ref|NP_588044.1| SUA5/yciO/yrdC family protein Sua5 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74582918|sp|O94530|SUA5_SCHPO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           sua5; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein sua5
 gi|4164422|emb|CAA22839.1| SUA5/yciO/yrdC family protein Sua5 (predicted) [Schizosaccharomyces
           pombe]
          Length = 408

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 177/368 (48%), Gaps = 64/368 (17%)

Query: 10  NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +AL  A   L +   P+A PTETVYGL  D+R   A+  +Y+ K RPA NPLI HV+ + 
Sbjct: 40  SALENAANILRNTDYPVAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLD 99

Query: 69  MVKK-----------------HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHP 106
            +++                 H S   +  + L L K FWPGPL+++L ++   +  + P
Sbjct: 100 QLRRLLLSAYPKAKSEVKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEANPPVSP 159

Query: 107 LSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
           + TA  KT   R+P       LI     PLA PSAN S + S T  KH+  + +  +IPL
Sbjct: 160 IVTAGQKTFAVRMPQHPVALALISISDSPLAAPSANASTRPSPTLAKHVY-NDLQGKIPL 218

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA--------ISVELEYCVDET 217
           I+DGG   +G+EST+VN  C+  V ILRPGG+ +E ++ +        + V  +  ++  
Sbjct: 219 ILDGGACGVGVESTVVNGLCDPPV-ILRPGGISLEEIQSSGGAWERTKVFVAKKSDMETD 277

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG---- 273
             PQ+PGM   HY+P ++V L    VN  E+   +G V  K +    I+    K G    
Sbjct: 278 FIPQTPGMKYRHYSPTAKVLL---FVNYTES-DAYG-VFEKYLSEQGITKEKQKIGVLCS 332

Query: 274 -KLKEAAF--------------------NLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
            +  E +F                    NLF  ++  D  G   +    +     G+AI 
Sbjct: 333 KRWNEESFPSHCPFVFLHMGRDGHEITKNLFAQLRDLDLQGVDFVLVEGVSEENEGLAIM 392

Query: 313 NRLERAAA 320
           NRL +AA+
Sbjct: 393 NRLGKAAS 400


>gi|328350842|emb|CCA37242.1| Uncharacterized protein ywlC [Pichia pastoris CBS 7435]
          Length = 436

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 160/320 (50%), Gaps = 27/320 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-----ASVDPL 79
           I  PTETVYGL   S N  +++ +Y  K RP  NPLI HV+ +S + +        +  +
Sbjct: 110 IGFPTETVYGLGASSLNDESVKSIYIAKNRPLDNPLITHVASLSQLHRKILPPSTKIPDI 169

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
            L L K FWPGPLT++L +   T +  L+TA   T   R+P     + LI     PLA P
Sbjct: 170 YLPLIKKFWPGPLTILLPVEDDTTLSRLTTAGQDTFAVRIPNHPVARALIAISDEPLAAP 229

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN S + S T  +H+    +   IPLIIDGG S +GLES++VN      + +LRPGG+ 
Sbjct: 230 SANASTRPSPTLAEHVY-HDLQGRIPLIIDGGPSNVGLESSVVNGLTNPPM-LLRPGGIS 287

Query: 199 IETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP----REAL 249
           ++ ++         V  +   + +   ++PGM   HY+P ++V L     N     +EAL
Sbjct: 288 LKQIQEVGHGWEDIVTAKKTANASEPVRTPGMKYKHYSPTAKVILFVKCGNGVKAVQEAL 347

Query: 250 IRFGNVPIKNIENAIISLNLSKTGK----------LKEAAFNLFNYMKIADDSGASSIAF 299
            R+ N  I  +  +   +  +   +          + E A NLF  ++  D +    I  
Sbjct: 348 SRYPNSKIALLTGSEFEIPETLQAQFAIVDHLGSSITEMAHNLFAKLRNLDKNDMDYIFI 407

Query: 300 SSIPNHGLGIAINNRLERAA 319
             +P+ G G+A+ NRL +AA
Sbjct: 408 EGVPDAGEGLALMNRLSKAA 427


>gi|331270448|ref|YP_004396940.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum
           BKT015925]
 gi|329126998|gb|AEB76943.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum
           BKT015925]
          Length = 349

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 172/335 (51%), Gaps = 27/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A E L  G  +A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DVKVIEEAGEVLREGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVHIADF 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
           ++      V  ++  + + FWPGPLTL++    + +I  +++A L++   R+P     ++
Sbjct: 74  NLDGLVEEVPSIAKKIMEKFWPGPLTLIMK--KSREIPYVTSAGLESVGIRMPSNIVARE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ S TN++  +   + + +  II G   ++GLESTIV+    
Sbjct: 132 LIKKSGVPIAAPSANISGKPSPTNIERCI-EDLNERVEYIIGGEKCEVGLESTIVDCTIN 190

Query: 187 KKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
               +LRPGG+ +E L+       I   +    D+   P++PGM   HYAP++ V++ A 
Sbjct: 191 PPC-VLRPGGITLEMLREIEPEIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVKIIAG 249

Query: 242 HVNPREALI------------RFGNVPIKNIE----NAIISLNLSKTGKLKEAAFNLFNY 285
           ++    A I            + G +  +  +    NAII  +L     L   A NLF  
Sbjct: 250 NLVKSIAKINEMVQNYIDDGKKVGIMATEETKGKYSNAIIK-SLGSREDLHTIAHNLFKT 308

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +   D      I   +     +GIAI NRL++AA 
Sbjct: 309 LSEFDSENVDIILSEAFKEEEIGIAIMNRLKKAAG 343


>gi|121534884|ref|ZP_01666703.1| Sua5/YciO/YrdC/YwlC family protein [Thermosinus carboxydivorans
           Nor1]
 gi|121306483|gb|EAX47406.1| Sua5/YciO/YrdC/YwlC family protein [Thermosinus carboxydivorans
           Nor1]
          Length = 346

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 168/335 (50%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A + L  G  +A PTETVYGL  +  +  A  R+Y  K RP+ NPLI H++D 
Sbjct: 14  DKRILAEAADILRRGGLVAFPTETVYGLGANGLDAQAAARIYAAKGRPSDNPLILHIADS 73

Query: 68  SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
             V   A   P  +  L   +WPGPLT+VLD    TD+ P + T  L T   R+P     
Sbjct: 74  GDVALLARRIPANAAALMARYWPGPLTIVLD---RTDVVPDAVTGGLSTVAVRLPASTVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++LI   G P+A PSAN SG+ S T  + +L + +   I  ++D G   IG+EST+V+  
Sbjct: 131 RELIRLAGVPVAAPSANTSGRPSPTTAQAVL-ADLSGRIDAVLDAGPCDIGVESTVVD-- 187

Query: 185 CEKKV-RILRPGGLEIETLKRAIS-VELEYCVDE-TSTPQSPGMLKSHYAPRSQVRL--- 238
           C   V  +LRPGG+ +E L   +  VEL+  + E T+TP+SPGM  +HYAP + + L   
Sbjct: 188 CTTPVPTLLRPGGITLEMLLETLGEVELDSALAESTATPRSPGMKYTHYAPAAPMTLVEG 247

Query: 239 ----RAIHVNPREALI---RFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYMK 287
                 +     EAL    R G V        + +A++             A NL+  ++
Sbjct: 248 AGAAAMVRRKVTEALAAGWRVGAVVSAETAALLPSAVVKAVYGPRDDAAAIAANLYQALR 307

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D      I    I   GLG+A+ NRL +AA  R
Sbjct: 308 HFDACPVDVIYAEGITESGLGLAVMNRLRKAAGYR 342


>gi|150866973|ref|XP_001386755.2| hypothetical protein PICST_33949 [Scheffersomyces stipitis CBS
           6054]
 gi|149388229|gb|ABN68726.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 387

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 171/347 (49%), Gaps = 40/347 (11%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+ N    A E +     +  PTETVYGLA  + N  ++R +Y  K RPA NPLI HVS 
Sbjct: 31  TEDNIRLAANELVHTTNCVGFPTETVYGLAGSALNDDSVRSIYRAKNRPADNPLIVHVSS 90

Query: 67  ISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           +  +K     +   +  + L+L   FWPGPLT++L +   + I  L TAN  T   R+P 
Sbjct: 91  LDQLKRKLLPRDYEIPSVYLNLIDKFWPGPLTILLPIHKDSPISKLVTANQSTFAVRMPN 150

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + LI     PLA PSAN S + S T  +H+    +  +IP I+DGG   +G+EST+
Sbjct: 151 HPIARALIAVSDTPLAAPSANASTRPSPTLAQHVF-HDLQGKIPYILDGGACDVGVESTV 209

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL-------EYCVDETSTPQSPGMLKSHYAPR 233
           V+      + +LRPGG+ +E + R +  EL       +    +    ++PGM   HY+P 
Sbjct: 210 VDGLVSPPM-LLRPGGVSVEEI-RTVGGELWENVILSKKTAGKNEAVRTPGMKYRHYSPT 267

Query: 234 SQVRL--------RAI-------HVNPRE---ALIR---FGNVPIKNIENAIISLNLSKT 272
           ++V L        +A+       +++P +   AL++   F +    N  N  I   L  T
Sbjct: 268 AKVVLFVDCGDGAKAVNDYIDQNNIDPVQIKIALLKSRTFQDADKIN-SNIYIQRELGTT 326

Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           G   E + NLF  ++  D+ G   I    I     G+A+ NRL +AA
Sbjct: 327 G--SEISHNLFKALREMDEYGVDLIMIEGIDESNEGLAVMNRLSKAA 371


>gi|300361414|ref|ZP_07057591.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03]
 gi|300354033|gb|EFJ69904.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03]
          Length = 334

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 163/318 (51%), Gaps = 16/318 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPLI  VSD  M++ +
Sbjct: 17  EAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENY 76

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
            +  P  +  L K FWPGPLT++L +   T +    T  L TA FR P    T  LI   
Sbjct: 77  VNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPDDEMTHDLISEL 135

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLESTIV++  E    +
Sbjct: 136 GKPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTEIGLESTIVDLSVETPT-V 193

Query: 192 LRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           LRPG +  E + + +  E+      T T   P++PGM   HYAP + V +  +      +
Sbjct: 194 LRPGEITPEEISKVLGEEVLMNKGTTKTKGVPKAPGMKYRHYAPSAPVFI--VDKEADFS 251

Query: 249 LIRF----GNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            I++    G   +  + + I S N    GK + +AA NLF  ++  D        +    
Sbjct: 252 KIKWDKETGVAALDEVLDKIDSSNKYSLGKTIDKAAHNLFGALRYFDSENNIKRIYVQGF 311

Query: 304 NHG-LGIAINNRLERAAA 320
           +HG +  A  NRL +AAA
Sbjct: 312 DHGAISPAYMNRLNKAAA 329


>gi|222529067|ref|YP_002572949.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455914|gb|ACM60176.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 348

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 164/335 (48%), Gaps = 27/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S  
Sbjct: 12  DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHISSK 71

Query: 68  SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M++  A + D     L ++FWPGPLT+VL       I    TA L T   R+P      
Sbjct: 72  DMLEMCAEITDDRVYMLIEMFWPGPLTIVLP--KKNVIAENVTAGLSTVGVRMPANKIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN SG+ S T  KH++   + K + +IIDGG    GLEST+V++  
Sbjct: 130 ELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMGK-VDVIIDGGKCSFGLESTVVDLSG 188

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQV----- 236
           EK V ILRPG +    LK  +S +E    V E  T   P+SPGM   HYAP +++     
Sbjct: 189 EKAV-ILRPGAISYFALKEVLSDIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVKG 247

Query: 237 ----RLRAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNY 285
               R+  ++   +E   +   V I        N E+    L L      KE   NLF+ 
Sbjct: 248 RIDKRIDKMNDMKKEFEYKGYRVGILCFYETAHNFESQ-YKLILGSMFDAKECGRNLFSI 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  +  G   I           +A+ NRL +AAA
Sbjct: 307 LRKFNQLGVDYILCEWGKFDLEFLALENRLYKAAA 341


>gi|313884935|ref|ZP_07818687.1| Sua5/YciO/YrdC/YwlC family protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619626|gb|EFR31063.1| Sua5/YciO/YrdC/YwlC family protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 346

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 173/332 (52%), Gaps = 24/332 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L +A + L  G  +A PTETV+GL   + N  A++ +++ K RP  NPLI HV+ I  
Sbjct: 13  DQLDQAAQCLKEGGLVAFPTETVFGLGAIANNEAAVQSVFKTKGRPNDNPLIIHVASIES 72

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           V  + ASV PL+  L + FWPGPLT++L + + T   P +TA   TA FR+P    T  L
Sbjct: 73  VHHYAASVSPLAQALMEKFWPGPLTIILPIKTGT-FAPAATAGQNTAGFRMPDQDQTLAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCE 186
           I+  G PL  PSAN SG+ S T++ H+L     K   ++ +   ++ IG+EST+V +   
Sbjct: 132 IDKVGFPLVGPSANLSGKPSPTSLAHVLHDFNGKIAGVVANQAELTAIGVESTVV-LPLA 190

Query: 187 KKVRILRPGGLEIETLKRAISV--ELEYCVDETSTP--QSPGMLKSHYAPRSQVRLRAI- 241
             + ILRPG + ++ ++ AI V   +    ++ +     SPG+   HY+P+  V L A  
Sbjct: 191 DHIEILRPGHVTVDMIEEAIGVPAHVRTAAEQLANQAIMSPGVKYRHYSPKQPVYLMAFD 250

Query: 242 HV--NPREALIRFGN-----------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           H   + +E + +F               ++N +  + S +L K G  + A  +LF  ++ 
Sbjct: 251 HTLEDWQEEIDKFPEAVAILAYQDHITSLQNHQKVVASYSLGKKGDWESATRHLFAGLRA 310

Query: 289 ADDSGASSIAFSSI-PNHGLGIAINNRLERAA 319
            ++S A  +    + P      A  NRL +AA
Sbjct: 311 LEESSAKILMVQGLDPKVADHQAYMNRLSKAA 342


>gi|330834140|ref|YP_004408868.1| translation factor SUA5 [Metallosphaera cuprina Ar-4]
 gi|329566279|gb|AEB94384.1| translation factor SUA5 [Metallosphaera cuprina Ar-4]
          Length = 350

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 165/327 (50%), Gaps = 18/327 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +++ +RKA E + +G  +A PTETVYGL  ++ +  A  ++++ K+RP  NPLI H++D+
Sbjct: 12  ETDLIRKAAEVIRSGGLVAFPTETVYGLGANAFDGKAAEKVFKAKRRPMDNPLIVHIADV 71

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +++ AS + P  + LA+  WPGPLT VL   S   +   +T  L T   R+P      
Sbjct: 72  GQLEEVASDLSPEVMDLAQKVWPGPLTFVLKKTSKVPLE--TTGGLNTVAVRMPAHPIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN + + S T  +H++   +   + ++IDGG S  G+ESTI+N+  
Sbjct: 130 SLIRESGVPIAAPSANLATKPSPTLAEHVI-QDLDGSVDIVIDGGESFFGVESTIINLTV 188

Query: 186 EKKVRILRPGGLEIE---TLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL--- 238
           +  V +LRPG   +E   TL   I+V  E     E     +PGM   HYAP   + L   
Sbjct: 189 KPPV-LLRPGPFTVEELTTLVGEINVPEELTRGKEFGVALAPGMKYKHYAPDKTLYLVER 247

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLN-----LSKTGKLKEAAFNLFNYMKIADDSG 293
           ++I ++    L     V +   E     L      L  +  L   A NLF   +  D   
Sbjct: 248 KSIFLDVVNILREKKRVAVLCSEETCSKLEEPRIILGNSENLYSIAKNLFKSFRQLDGLD 307

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
                    P  G+G+AI NR+++A A
Sbjct: 308 VDLGVIEPFPEKGIGLAIMNRVKKATA 334


>gi|312884326|ref|ZP_07744035.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368099|gb|EFP95642.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 320

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 171/326 (52%), Gaps = 22/326 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q +S  +S  + +A + L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI
Sbjct: 4   QHLSAQNSLDIEQAQKILTSGELVAIPTETVYGLAADASNPDAVKKIFAAKGRPADHPLI 63

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+  +  +   A   P   + +AK FWPGP+TL+L+     D + + T  L T   R+P
Sbjct: 64  VHIGRLEQLSDWARDIPQQAYTIAKAFWPGPVTLLLN--KADDANTVVTGGLGTIGIRMP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  L+E  G  +A PSAN   ++S T+  H++ +S+  +I  ++DGG    GLEST
Sbjct: 122 AHPVFSTLLEASGMAVAAPSANPYKKLSPTSAVHVI-NSLEGKIAAVLDGGDCHHGLEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRS 234
           I+++  +   R+LR G +  + L   +        +E  TP S     PG + SHY P +
Sbjct: 181 IIDL-TQTPFRVLRSGPISAKQLADVLG-------EEVLTPTSHSAAVPGNVTSHYQPNT 232

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
           +VRL +      +  ++   +    IE  + I+S+ + K   + + A +L+  +  AD  
Sbjct: 233 RVRLVSADELSSKPELKVACLHYSAIETNDNIVSIKMPK--DVAQYAHDLYRTLNDADKL 290

Query: 293 GASSIAFSSIPNHGLGIAINNRLERA 318
           G   I     P     +A+++RL RA
Sbjct: 291 GCDEIWVERPPLTEDWVAVHDRLNRA 316


>gi|258512736|ref|YP_003186170.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479462|gb|ACV59781.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 360

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 173/346 (50%), Gaps = 44/346 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS--- 68
           LR+  + L  G  +A PTETVYGL  ++    A+RR++  K+RP  NPLI H++D +   
Sbjct: 19  LREPAQSLRRGGLVAFPTETVYGLGANALEEEAVRRIFAAKERPRDNPLIVHIADDAKLR 78

Query: 69  -MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++ ++  +   ++ L + FWPGPLTL+L   +   + P           R+P     + 
Sbjct: 79  DVIDENQPLHEDAVRLMRAFWPGPLTLLLP--AGARLAPSVHPGQPLVGVRMPDHPVARA 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANRSG+ S T    ++ + +   I  ++DGG   IG+EST++ ++ +
Sbjct: 137 LIAEAGVPVAAPSANRSGRPSPTTPDDVV-ADLDGRIDWLVDGGPCPIGVESTVLLLEPD 195

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVR------ 237
              RILRPGG+  E +   I   + Y     D  S P +PGM   HYAP ++V       
Sbjct: 196 -CARILRPGGVTQEMIASVIDRPVLYAADVFDVASAPLAPGMKYRHYAPNARVHVWWGEP 254

Query: 238 -----------LRAIH---------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277
                      L A+          + P + + RFG   + +   A++  +       +E
Sbjct: 255 EAIDEAMRAFLLEAVQDDDLMVPALIAPDDFVRRFGWA-LSDERQAVLPADTYA----EE 309

Query: 278 AAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAAAPR 322
            A +L+  ++  D +GA+ +    + P HG+G A+ NRL +A+A R
Sbjct: 310 LARHLYRLLRAFDGAGATDVLVHGVDPTHGVGAAVMNRLYKASAGR 355


>gi|303228444|ref|ZP_07315277.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516946|gb|EFL58855.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 344

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 169/342 (49%), Gaps = 33/342 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I  +T  N L+     L  G  +AIPTETVYGL  +  +  A+ ++Y  K RP+ NPLI 
Sbjct: 6   ITELTKEN-LQLVAYALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDNPLIL 64

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP 120
           HV +   +K      P +   L + FWPGPLT+    L  +D+ P  +T  L     R P
Sbjct: 65  HVPNAESIKPLVKEIPETAKALIEAFWPGPLTIT---LPKSDLVPDRATGGLARVALRCP 121

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + ++E  G P+A PSAN SG+ S T  + +    +   IP I+D GI  IG+EST
Sbjct: 122 DHAVCRNILELAGVPIAAPSANISGRPSPTTAQSVY-DDMNGRIPYIVDAGICTIGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPRSQVR 237
           +V V+ +  V ILRPGG+  E L++ + +V  + +   +   P++PGM   HYAP +   
Sbjct: 181 VVEVR-DDGVTILRPGGITKEMLEQVVDNVSYDPFLSSQNEAPKAPGMKYKHYAPDAP-- 237

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSK-------------------TGKLKEA 278
           +RA   NP++    F NV I+  E    +  +S+                   +G     
Sbjct: 238 MRAFIGNPKDVAETFSNV-IREQETKRGAFLVSQETYDLLKDSVHGEFHVYGHSGDAVAL 296

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           A + +  +   ++     I    + N GLG+A+ NR+E+A A
Sbjct: 297 AHDFYKTLHHFNECDVDYILAEGVVNTGLGVAVMNRMEKACA 338


>gi|296242927|ref|YP_003650414.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486]
 gi|296095511|gb|ADG91462.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486]
          Length = 356

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 169/340 (49%), Gaps = 32/340 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A   L  G  +A PTETVYGL     +  A+ R++++K RP+ NPLI HVS + MV+
Sbjct: 17  IQYAAGVLRRGGLVAFPTETVYGLGALVWDERAVTRIFQVKGRPSDNPLIVHVSSVEMVE 76

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           K AS  P   + L +  WPGPLT+VL    +  +    TA L T   R+P       LI 
Sbjct: 77  KVASRIPEDAYRLMEKAWPGPLTIVLP--RSERVPRTVTAGLDTVAVRMPSHPVALSLIR 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T   H++   + + + +I+D G +  G+EST+VN+  E   
Sbjct: 135 ETGEPVAAPSANLSGRPSPTTGYHVIRDLMGR-VEVILDAGATLQGVESTVVNILTEPPT 193

Query: 190 RILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRL------ 238
            +LRPG + +E ++R +   +        ++    P +PGM   HYAP +++ L      
Sbjct: 194 -LLRPGAMPVEDVERILGRRILIPGFAKGLEHAEKPLAPGMKYRHYAPSAKLVLVEAPLY 252

Query: 239 -------RAIHVNPREALIRFGNVPIKNIE--------NAIISLNLSKTGKLKEAAFNLF 283
                   A ++  + +L   G + +   +        + + +L+L     L E A NLF
Sbjct: 253 TLECLKELAGYIRRQASLNSDGKLCVVATDETLQYYSGSGLKTLSLGSRRDLFEIARNLF 312

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
             ++  D+           P  GLG+ I NRL +AA+ ++
Sbjct: 313 PTLRKVDEEDCRIAYVEGFPEQGLGLTIMNRLRKAASEKH 352


>gi|197302164|ref|ZP_03167223.1| hypothetical protein RUMLAC_00890 [Ruminococcus lactaris ATCC
           29176]
 gi|197298595|gb|EDY33136.1| hypothetical protein RUMLAC_00890 [Ruminococcus lactaris ATCC
           29176]
          Length = 508

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 161/344 (46%), Gaps = 45/344 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   L  G  +A PTETVYGL  D+    A ++ Y  K RP+ NPLI H++D 
Sbjct: 14  DPEVIEEAGNILKNGGLVAFPTETVYGLGADALKEEAAKKTYAAKGRPSDNPLIVHIADY 73

Query: 68  SMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPC 121
             +K       A  D L+ H    FWPGPLT++ +    ++I P  +T  L T   R+P 
Sbjct: 74  EDLKAVAVNIPAKTDALAAH----FWPGPLTMIFE---KSEIVPYGTTGGLDTVAVRMPS 126

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 +I   G  ++ PSAN SG+ S T  +H+ S  +  +I +I+D G   IGLESTI
Sbjct: 127 DPVAAAVIRAAGGFVSAPSANTSGRPSPTTAQHV-SEDLDGKIDMILDSGSVDIGLESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPR 233
           +++  E  + ILRPG +  +  +  I       VDET         P++PGM   HYAP+
Sbjct: 186 LDMTVEPPM-ILRPGAITADMFEEVIG---PVSVDETILGSESNKAPKAPGMKYRHYAPK 241

Query: 234 S-----------------QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK 276
           +                 Q+   A     R  +I  G   +   +  I+  N+      K
Sbjct: 242 AKLIIAEGDIREEVLAIRQLAYAAHRQGERVGIIATGET-LPFYKYGIVK-NIGTRENEK 299

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             A NL+  ++  DD     I   S    G+G AI NRLE+AA 
Sbjct: 300 TIARNLYRVLREFDDEKVDIIYSESFAMQGIGSAIMNRLEKAAG 343


>gi|241957109|ref|XP_002421274.1| protein required for respiratory growth, putative [Candida
           dubliniensis CD36]
 gi|223644618|emb|CAX40606.1| protein required for respiratory growth, putative [Candida
           dubliniensis CD36]
          Length = 382

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 163/322 (50%), Gaps = 31/322 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81
           I  PTETVYGLA  + +  ++R +Y+ K RPA NPLI H+S I  +K+   +  +  + L
Sbjct: 56  IGFPTETVYGLAGSALSDESVRSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQIYL 115

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           +L   FWPGPLT++L +   + I  L TAN  T   R+P     + LI     P+A PSA
Sbjct: 116 NLISHFWPGPLTILLPITKDSPISKLVTANQNTFAVRMPNHPVARALIAMSDTPIAAPSA 175

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N S + S T  +H+    +  +IPLI+DGG   +G+EST+++   +  + +LRPGG+ +E
Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACDVGVESTVIDGLVDPPM-LLRPGGVSLE 233

Query: 201 TLKRAISVELEYCVDETSTP------QSPGMLKSHYAPRSQVRLR---AIHVNPREALIR 251
            +KR      E+ +    T       ++PGM   HY+P ++V L       +N  E+ + 
Sbjct: 234 DIKRVGGKPWEHIIVAKKTAGKLEPVKTPGMKYRHYSPTAKVVLFVNCGDGINAIESYLT 293

Query: 252 FGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
              +     + A++                L  TG   E + NLF Y++  D+     + 
Sbjct: 294 NNKLDASATKIALLKSKHFSEDHPDFVIKRLGTTG--NEISHNLFKYLREVDEEDKVELI 351

Query: 299 F-SSIPNHGLGIAINNRLERAA 319
           F   I     G+A+ NRL +AA
Sbjct: 352 FVEGIDETNEGLAVMNRLSKAA 373


>gi|203288164|ref|YP_002223179.1| hypothetical protein BRE_741 [Borrelia recurrentis A1]
 gi|201085384|gb|ACH94958.1| uncharacterized conserved protein [Borrelia recurrentis A1]
          Length = 334

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 169/333 (50%), Gaps = 27/333 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +   + + KA +F+++G  +  PTETVYG+  ++ +  AIR L+ +KKRP  NPLI HV
Sbjct: 4   EVIKESEIEKAVKFINSGELVVFPTETVYGIGANAYDENAIRMLFIVKKRPITNPLIVHV 63

Query: 65  SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             I  +K+     P S + L K F PGP+T +L   +   I  L    L++   R+P   
Sbjct: 64  ESIEKIKELVEYIPDSAMILMKKFTPGPITFILK--NAGKISKLINGGLESIAVRIPSDP 121

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-----GISKIGLE 177
              KLI+    P+A PSAN S + S TN +  +     KE+  ++ G      +S+IG+E
Sbjct: 122 IALKLIKMSKVPIAAPSANLSKRPSATNFEMAI-----KELNGLVKGIIQKNEVSQIGIE 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST+++   +  V ILRPG +  E ++R ++    +EY + +    QSPG L  HY PR  
Sbjct: 177 STVISFDAKSNVSILRPGSITKEMIERELNGKFNVEYSLGKKILQQSPGNLLEHYRPRIP 236

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT---------GKLKEAAFNLFNYM 286
           V L     N R+  I   +  I  ++N I S   +K            L+E A N++   
Sbjct: 237 VYLFRQKDNIRK-YISQQDTKILIMKNTIKSYWFNKLWNTNHICVFNTLEEYAKNIYKVF 295

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            +  +     I    + N+ LG +INNRL++A+
Sbjct: 296 -VESERTHKQILAEFVDNNQLGYSINNRLKKAS 327


>gi|320157253|ref|YP_004189632.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
 gi|319932565|gb|ADV87429.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
          Length = 320

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 168/327 (51%), Gaps = 28/327 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  +   + +A E L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI H
Sbjct: 6   LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 65

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           +  +  +   A   P   + LA+ +WPGP+TL+L       + P+ T  L+T   R+P  
Sbjct: 66  IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLK--KAPHVTPVVTGGLETIGIRMPAH 123

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L+++ G  +A PSAN   ++S T+ KH++ +S+  +I  ++DGG    GLESTIV
Sbjct: 124 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVM-NSLGGKIAAVLDGGDCAHGLESTIV 182

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRSQV 236
           ++  EK  RILR G +    L   +        +E S+P S     PG + SHY P ++V
Sbjct: 183 DL-TEKPFRILRTGPVTAAQLSATLG-------EEVSSPVSHNVAVPGNVTSHYQPNTRV 234

Query: 237 RL-----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           RL      A+  + + A + +   P    EN       S    + E + +L+  +  AD 
Sbjct: 235 RLVQASDLALVGDKKIAYLHY--TPFTAQENVEARQMPS---SVAEYSHDLYRTLDEADK 289

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318
            G   I     P      A+++RL RA
Sbjct: 290 WGCEEIWVERPPVTENWFAVHDRLNRA 316


>gi|227499752|ref|ZP_03929852.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus tetradius ATCC
           35098]
 gi|227218138|gb|EEI83404.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus tetradius ATCC
           35098]
          Length = 349

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 169/340 (49%), Gaps = 42/340 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + KA  +L  G  +AIPTETVYGL  +  +  A   +++ K RPA NPLI H+S+I
Sbjct: 19  DQEKIIKAANYLKEGKLVAIPTETVYGLGANGLDEKACVNIFKTKNRPADNPLILHISNI 78

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124
            M+     +V+  +  L KL WPGPLT++      +D+ P + TA   T   R P     
Sbjct: 79  DMLYNLVENVNDDAKKLMKL-WPGPLTMI---FKKSDLIPDVVTAKGDTVAVRFPVDEIA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +IE    P+A PSAN SG+ S TN  +     +  +IPLIIDGG   IG+EST++++ 
Sbjct: 135 RAIIEKANVPIAAPSANISGRPSPTNA-YDCYYDLNGKIPLIIDGGSCDIGIESTVIDM- 192

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238
            E    ILRPG   +E ++  I  V L+   VD+   P+SPG    HYAP++++++    
Sbjct: 193 SENPPTILRPGYYTLEMIREIIPEVRLDDALVDDNKIPKSPGQKYKHYAPKARMQVYVGK 252

Query: 239 ---------------RAIHVNP---REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280
                            +HV      E + RF +            ++      L + + 
Sbjct: 253 GAADFIYKKARAYSNSGLHVGVLVFEEDMERFKDFD---------RISFGDRDDLSQMSH 303

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            LF  ++  D  G   I    + ++ LG +I NR++++AA
Sbjct: 304 VLFTALRKMDKMGVDLILAEGVLDNNLGKSIMNRMKKSAA 343


>gi|15897573|ref|NP_342178.1| hypothetical protein SSO0664 [Sulfolobus solfataricus P2]
 gi|284174894|ref|ZP_06388863.1| hypothetical protein Ssol98_09601 [Sulfolobus solfataricus 98/2]
 gi|6015811|emb|CAB57638.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813830|gb|AAK40968.1| SUA5 related conserved hypothetical protein [Sulfolobus
           solfataricus P2]
 gi|261602336|gb|ACX91939.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus solfataricus 98/2]
          Length = 358

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 162/329 (49%), Gaps = 22/329 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KA   + AG  +  PTETVYGL  ++ +P A+++++  K RP  NPLI H+S+I  
Sbjct: 15  DKIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKIFIAKNRPMDNPLIVHISNIDQ 74

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A   P   ++L  + WPGPLT VL    T  +   +T  L+T   R+P       L
Sbjct: 75  LYEVAKDIPKKIINLVNIVWPGPLTFVLK--KTEKVPKETTGGLETVAVRMPAHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN + + S T V+H++   I  ++ +I+D G +  G+EST++NV  + 
Sbjct: 133 INESGVPIAAPSANLATKPSPTRVEHVI-DDIYGKVDVILDSGETFFGVESTVINVTVDP 191

Query: 188 KVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAP---------RS 234
            V +LRPG   +E L+R     +  E      E     +PGM   HYAP         RS
Sbjct: 192 PV-LLRPGPFSVEELERLFGKVVVPEQAKGTAEFDVALAPGMKYKHYAPTKRLLVVENRS 250

Query: 235 QVRLRAIHVNPRE---ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
            +R     +  R    AL+    V  +     I  + L     L E + NLF+  +  D 
Sbjct: 251 VLRGVINELQKRSCRIALLCASEVCKQFRGEKIEIIELGSENNLYEISRNLFDSFRKLDK 310

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S        SI   G+G+AI NR  +A+ 
Sbjct: 311 SNVDIGVIHSISEKGIGLAIMNRTRKASG 339


>gi|290969301|ref|ZP_06560826.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780807|gb|EFD93410.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1
           str. 28L]
          Length = 348

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 164/350 (46%), Gaps = 32/350 (9%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++ ITD       LR+A   +  G  +  PTETVYGL  +  + TA RR++E K RP+ 
Sbjct: 4   ELLKITDIEQQQELLRQAGACIRQGGLVVFPTETVYGLGANGLDETACRRIFEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI  V+D    ++ +  + PL+  L   FWPGPLTLVL   S   +  ++T  L T  
Sbjct: 64  NPLILTVADRQGAEQISDRISPLAEKLMARFWPGPLTLVLPRRSC--VPDVATGGLDTVA 121

Query: 117 FRVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P     +    Y   P+A PSAN S + S T     L   +   + +IIDGG   IG
Sbjct: 122 VRCPDHDICRAFLQYAQVPVAGPSANLSTRPSPTTAAEAL-HDMDGRVQMIIDGGACHIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKR-AISVELE-YCVDETSTPQSPGMLKSHYAPR 233
           +ESTIV      +V ILRPGG+  E L   A  V L+ + V     P++PGM   HYAP 
Sbjct: 181 VESTIVECTAADEVTILRPGGITPEMLAEVAAKVVLDTHLVSGKGVPKAPGMKYRHYAPE 240

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENA--IISLNLSKT----------------GKL 275
           + V+     V   +A+I    +     + A   +   LS+                 G  
Sbjct: 241 APVQ---AFVGSEQAVIEAVQMAYTEAKAAGKTVGFLLSREVATQVGAPHTFIWGHHGDA 297

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
              A  L+  +   D      I    +P  GLG+A+ NRL++AA    Q+
Sbjct: 298 AALANKLYTGLLFFDKERVDLILAEGVPAVGLGLAVMNRLKKAAGGHVQA 347


>gi|119720716|ref|YP_921211.1| Sua5/YciO/YrdC/YwlC family protein [Thermofilum pendens Hrk 5]
 gi|119525836|gb|ABL79208.1| translation factor SUA5 [Thermofilum pendens Hrk 5]
          Length = 366

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 167/346 (48%), Gaps = 39/346 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+ ++ +A   L  G  +A PTETVYGL        A+ R++++K+RP  NPLI H+S  
Sbjct: 26  DAKSIEEAASILRKGGVVAFPTETVYGLGAVYHMRDAVIRVFKVKRRPPDNPLILHISSF 85

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           S +   AS  P ++H LA+ FWPGPLT+VL    T+ +    T  L+    R+P      
Sbjct: 86  SQIYTLASEVPEAVHRLAEKFWPGPLTVVLP--KTSRVPYEVTGGLEKVAVRMPAHNVAL 143

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LIE  G P+A PSAN SG+ S T  +H+L + +  EI  ++D G +  G+EST++++  
Sbjct: 144 RLIEAVGDPIAAPSANLSGRPSPTTAQHVL-ADLGDEIDGVLDAGETLYGVESTVIDLTA 202

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCV-------DETSTPQSPGMLKSHYAPRSQVRL 238
           +  V +LRPG + +E +++ +    + CV        E     +PG    HY+PR+Q+ L
Sbjct: 203 DPPV-LLRPGAVPLEEVEKVLG---KVCVPAFARGLGEAERALAPGTRYRHYSPRAQLVL 258

Query: 239 -----------------RAIHVNPREALIRFGNVPIKNIEN-----AIISLNLSKTGKLK 276
                            R +  N    L R G +              + L+L       
Sbjct: 259 VELKDYSDLSKLVDRVKRLVAENAGRGL-RVGVLCTDETREHYSGLGAVVLSLGSRRDPF 317

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             A  L++  +  D  G   I    +   GLG+ I NR+ +A+  R
Sbjct: 318 GIARRLYSSFREMDSLGVDVIVAEGVDERGLGLTIMNRMRKASTKR 363


>gi|289615809|emb|CBI57550.1| unnamed protein product [Sordaria macrospora]
          Length = 453

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/285 (35%), Positives = 147/285 (51%), Gaps = 38/285 (13%)

Query: 12  LRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           LR+A   L    +P+A PTETVYGL  D+    A++ +Y  K RP+ NPLI HV D+SM+
Sbjct: 57  LREAAHHLRTTDIPVAFPTETVYGLGADATRSAAVKGIYAAKGRPSDNPLIVHVCDLSML 116

Query: 71  K----------------KHASVDPLS--LH-LAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
           +                +    DP+    H L   FWPGPLT++L   S + + P  TA 
Sbjct: 117 RSLISSPSSSSSSSGQNQEEEKDPIPEIYHPLITRFWPGPLTILLPNPSPSLLAPEVTAG 176

Query: 112 LKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           L T   R+P     + LI+    PLA PSAN S + S T  +H+L   +   I LI+DGG
Sbjct: 177 LPTFGCRMPASALARSLIKLANAPLAAPSANASTKPSPTAAQHVL-DDLAGRIELILDGG 235

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA---ISVELEYC----VDETSTPQSP 223
              +G+EST+V+  C   V +LRPGG+ +E ++       VE  Y     V   + P++P
Sbjct: 236 SCSVGVESTVVDGLCSPPV-VLRPGGVSLEEIRSVPGWEGVEKAYKDQAEVGSKTAPRAP 294

Query: 224 GMLKSHYAPRSQVRLRAIH--------VNPREALIRFGNVPIKNI 260
           GM   HY+P+++V L  +          + REA+   G   +K++
Sbjct: 295 GMKYKHYSPKARVVLYEVEGGRGEVPGADVREAVEAVGKKEVKSV 339


>gi|322708850|gb|EFZ00427.1| translation initiation protein Sua5 [Metarhizium anisopliae ARSEF
           23]
          Length = 437

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 16/242 (6%)

Query: 11  ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           AL  A E+L     P+A PTETVYGL  D+    +++ +Y  K RP+ NPLI HV D+ M
Sbjct: 42  ALEPAAEYLRTKDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLDM 101

Query: 70  V------KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +      +   ++      L K FWPGPLT++L     + + P  TA L +   R+P   
Sbjct: 102 LRTLLGSRGQDAIPARYQSLVKKFWPGPLTILLPNPDPSPLAPEVTAGLDSFGVRMPSSP 161

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               LI+  G PLA PSAN S + S T  +H+    +   I +I+DGG  ++G+EST+V+
Sbjct: 162 LALTLIKLAGVPLAAPSANASTKPSPTTAQHV-KDDLDGRIEMILDGGSCQVGVESTVVD 220

Query: 183 VQCEKKVRILRPGGLEIETLK------RAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
             C+  V +LRPGG+ I+ L+        +    +   +  + P++PGM   HY+PR++V
Sbjct: 221 GLCDPPV-VLRPGGVGIDELRSCPGWEHVVKAYKDQSEEGKAAPRAPGMKYKHYSPRARV 279

Query: 237 RL 238
            L
Sbjct: 280 VL 281


>gi|313123399|ref|YP_004033658.1| translation factor (sua5 family) [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279962|gb|ADQ60681.1| Putative translation factor (Sua5 family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 331

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 162/330 (49%), Gaps = 34/330 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +A PTETVYGL   +    +++++Y  K RP+ NPLI  V+D +M++
Sbjct: 11  LDEAVSLLRKGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLIVTVADEAMMR 70

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            +A   P  +  L K FWPGPLT++L L     +   +T  L T  FR P    T  LI 
Sbjct: 71  PYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESATGGLPTVAFRCPDDQLTHDLIA 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G+P+  PSAN S + S T  +H+    +  +I  I+DGG +++GLESTIV++     V
Sbjct: 130 KLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLESTIVDLSVNPAV 188

Query: 190 RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            +LRPG +  E + + +  E+      V +   P++PGM   HYAP +QV +    V+  
Sbjct: 189 -VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYV----VDQA 243

Query: 247 EALIRFG---------------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           E   +                 N+P+   EN     NL K   L EA  NLF  ++  DD
Sbjct: 244 ETFAKLDLDVSCGVMATSDLLENLPVPE-EN---KFNLGKN--LTEADHNLFAGLRYFDD 297

Query: 292 SGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
                SI           +A  NRL +AA 
Sbjct: 298 RPEIKSIYVEGFDQGEESLAYMNRLNKAAG 327


>gi|23100449|ref|NP_693916.1| hypothetical protein OB2994 [Oceanobacillus iheyensis HTE831]
 gi|22778682|dbj|BAC14950.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 339

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 168/333 (50%), Gaps = 23/333 (6%)

Query: 4   MSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           M+  D N   +++A   L AG  +A PTETVYGL  D+ NP A+ ++++ K RP  NPLI
Sbjct: 8   MNDIDKNQSYIKEAAGILQAGQTVAFPTETVYGLGADATNPQAVSKIFQAKGRPEDNPLI 67

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVL--DLLSTTDIHPLSTANLKTACFR 118
            HV+    +++  +  P  +  L   F PGPLT +L  + +  +++    TA L T   R
Sbjct: 68  AHVATKEQLQRLVTSIPGYVDKLIAAFSPGPLTFILPSNGICASNV----TAGLDTIGVR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      +L++    P+A PSAN SG+ S T   H+  + +   I  ++DGG + +GLE
Sbjct: 124 IPNHPVALQLLKEVDIPIAAPSANISGKPSPTTADHVF-NDLEGRIAGLVDGGPTGVGLE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST+++   E  V ILRPGG+  E L+  I   L     +D    P+SPGM   HYAP   
Sbjct: 183 STVIDCTQEIPV-ILRPGGVTKENLESVIGHVLVDPGIIDGEGKPKSPGMKYKHYAPEVP 241

Query: 236 VRLRAIHVNPREALI--------RFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYM 286
           + +     N  + LI        R G +        +   N+ + G  ++E A +L++ +
Sbjct: 242 LWIFEGDSNGFQELIEKEQQSNHRVGVLCSNQFAVQLSHDNIYQLGDSMEEIASSLYDGL 301

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +         I   S P  G+G AI NRL +A+
Sbjct: 302 RYFKQQAVDVIICESFPESGIGQAIMNRLRKAS 334


>gi|313636281|gb|EFS02090.1| protein Sua5 [Listeria seeligeri FSL S4-171]
          Length = 303

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 167/305 (54%), Gaps = 19/305 (6%)

Query: 38  DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVL 96
           D+ N  AI+++YE K RP+ NPLI H++    +    AS    ++ L + FWPGPLT++L
Sbjct: 2   DATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFVASYPQKAIKLMEKFWPGPLTVIL 61

Query: 97  DLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
            L   +    +S A L T   R+P    +  LI+  G P+A PSAN+SG+ S T+  H++
Sbjct: 62  PLKKDSLASNVS-AGLSTVGVRMPDHPVSLALIKEAGIPVAAPSANQSGKPSPTSASHVI 120

Query: 156 SSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVEL-EYC 213
              +  ++  IIDGG + +GLEST+++   E  V ILRPGG+  E +++ I SVEL    
Sbjct: 121 -EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV-ILRPGGITKEQIEQVIGSVELANND 178

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL----RAI---HVNPREAL-IRFGNVPIKNIENAII 265
             ET  P++PGM  +HYAP++ V L    +A     +N  EA   + G +  K + + + 
Sbjct: 179 TKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQKEINKVEAAHKKLGILATKELLDGLT 238

Query: 266 SLNLSKTG----KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  +++T      ++E A  L+  ++  D +    I     P   LG A+ NRLE+AA  
Sbjct: 239 TNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDIIFAEVYPETELGAAVMNRLEKAAGN 298

Query: 322 RNQSQ 326
           R  S+
Sbjct: 299 RRISE 303


>gi|300812486|ref|ZP_07092912.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496547|gb|EFK31643.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|325684406|gb|EGD26574.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 331

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 162/330 (49%), Gaps = 34/330 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +A PTETVYGL   +    +++++Y  K RP+ NPLI  V+D +M++
Sbjct: 11  LDEAVSLLREGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLIVTVADEAMMR 70

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            +A   P  +  L K FWPGPLT++L L     +   +T  L T  FR P    T  LI 
Sbjct: 71  PYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESATGGLPTVAFRCPDDQLTHDLIA 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G+P+  PSAN S + S T  +H+    +  +I  I+DGG +++GLESTIV++     V
Sbjct: 130 KLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLESTIVDLSVNPAV 188

Query: 190 RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            +LRPG +  E + + +  E+      V +   P++PGM   HYAP +QV +    V+  
Sbjct: 189 -VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYV----VDQA 243

Query: 247 EALIRFG---------------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           E   +                 N+P+   EN     NL K   L EA  NLF  ++  DD
Sbjct: 244 ETFAKLDLDVSCGVMATSDLLENLPVPE-EN---KFNLGKN--LTEADHNLFAGLRYFDD 297

Query: 292 SGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
                SI           +A  NRL +AA 
Sbjct: 298 RPEIKSIYVEGFDQGEESLAYMNRLNKAAG 327


>gi|269957074|ref|YP_003326863.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305755|gb|ACZ31305.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 346

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 166/341 (48%), Gaps = 53/341 (15%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVK 71
           A   L AG  +A+PTETVYGLA D+ +P  +  +Y  K RP+ NPLI HV+   D+  V 
Sbjct: 16  AAGILRAGGIVALPTETVYGLAGDALDPAVVGAIYAAKGRPSDNPLIVHVAAFDDLPAVV 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC--GFTKKLI 128
           +   V   +  LA+ FWPGPLT+V   L   D+ P   TA L T   RVP    F + ++
Sbjct: 76  R--DVPGSARALAEAFWPGPLTMV---LPRRDVVPDRVTAGLDTVAVRVPAHEAF-RAVL 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G PLA PSAN++G  S T  +H+L   +   IP ++DGG   +G+EST+V++     
Sbjct: 130 RLAGVPLAAPSANQAGSPSPTTAEHVL-HDLDGRIPAVLDGGPCTVGVESTVVDLTSTPP 188

Query: 189 VRILRPGGLEIETLKRAI-------SVELEYCVDETSTPQSPGMLKSHYAP--------- 232
            R+LRPGG+ +E L+  +       +V  E   D+   P SPGM   HYAP         
Sbjct: 189 -RLLRPGGVSLEELRAVLGDVDVDPAVAGELAPDQ--VPGSPGMKYRHYAPAAPVVVVDG 245

Query: 233 ---------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
                    R Q  L  + +   E    F  + +    +A    +L++          LF
Sbjct: 246 PTTEAAAWVRGQPELHPVVLCSEEEAAAFAGLDVVTYGSAADPASLAR---------GLF 296

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGI--AINNRLERAAAPR 322
             ++  D    + + F+  P    GI  A+ NRL +AAA R
Sbjct: 297 GALRSVDRPEITRV-FARCPADDAGIARAVRNRLLKAAAFR 336


>gi|72162360|ref|YP_290017.1| translation factor SUA5 [Thermobifida fusca YX]
 gi|5107073|gb|AAD39949.1|AF144563_3 unknown [Thermobifida fusca]
 gi|71916092|gb|AAZ55994.1| translation factor SUA5 [Thermobifida fusca YX]
          Length = 335

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 165/322 (51%), Gaps = 23/322 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL +A   L AG  +A PTETVYGL  D+ NP A+ R++  K RPA +PLI HV+     
Sbjct: 19  ALDEAVRVLRAGGLVAFPTETVYGLGADAANPAAVARIFAAKGRPADHPLIVHVASAESA 78

Query: 71  KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +  A+   PL+  LA  FWPGPLTL+L    +  +    T    T   RVP       L+
Sbjct: 79  RDWAATFPPLARTLADAFWPGPLTLILP--RSAQVPDAVTGGRATVGLRVPDQPVALALL 136

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E +G  +A PSANR G++S T   H+ ++ +   + L++DGG   +G+ESTIV V  + +
Sbjct: 137 ERFGGGIAAPSANRFGRVSPTTAAHV-AADLGDRVDLVLDGGPCTVGVESTIVEV-ADGR 194

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL---------- 238
           + +LR GG+  + L       ++     T   ++PGML +HYAP ++V L          
Sbjct: 195 LTVLRTGGITPDDLAAVTGAPVDTT--PTGPARAPGMLAAHYAPAARVVLAEAAEAADTV 252

Query: 239 -RAIHVNPREA-LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            + +    R A L     VP +N+   ++   L      ++ A  L+  ++  D +GA  
Sbjct: 253 AQWVEKGHRVAVLAETATVP-ENLPEGVVV--LPSPASARDYARVLYQRLRDVDAAGADV 309

Query: 297 IAFSSIPNHGLGIAINNRLERA 318
           +        G+G+A+ +RL RA
Sbjct: 310 VVAIPPEPAGIGLAVRDRLLRA 331


>gi|116629881|ref|YP_815053.1| putative translation factor (SUA5) [Lactobacillus gasseri ATCC
           33323]
 gi|311110483|ref|ZP_07711880.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22]
 gi|116095463|gb|ABJ60615.1| translation factor SUA5 [Lactobacillus gasseri ATCC 33323]
 gi|311065637|gb|EFQ45977.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22]
          Length = 334

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/320 (35%), Positives = 160/320 (50%), Gaps = 20/320 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPLI  VSD  M++ +
Sbjct: 17  EAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENY 76

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
            +  P  +  L K FWPGPLT++L +   T +    T  L TA FR P    T  LI   
Sbjct: 77  VNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPDDELTHDLISEL 135

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+  PSAN S + S T   H+    +  +I  IID G ++IGLESTIV++  E    +
Sbjct: 136 GKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLESTIVDLSVETPT-V 193

Query: 192 LRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           LRPG +  E + + +  E+      T T   P++PGM   HYAP + V +    V+  E 
Sbjct: 194 LRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAPVFI----VDKEED 249

Query: 249 LIRF------GNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASSIAFSS 301
             +       G   +  + + I S N    G  + +AA NLF  ++  D        +  
Sbjct: 250 FSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDSENNIKRIYVQ 309

Query: 302 IPNHG-LGIAINNRLERAAA 320
             +HG +  A  NRL +AAA
Sbjct: 310 GFDHGTISPAYMNRLNKAAA 329


>gi|167038488|ref|YP_001666066.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116883|ref|YP_004187042.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166857322|gb|ABY95730.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929974|gb|ADV80659.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 354

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 164/329 (49%), Gaps = 28/329 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + +  G  +A PTETVYG+  +S N  AI++++  K RP  NPLI H++++  +    
Sbjct: 20  AAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRPQDNPLIVHIAELEQIYDLV 79

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
              P     L K FWPGPLTL+     +  +  ++TA + T   R+P       LI+   
Sbjct: 80  KEVPQKAKTLMKKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSNTIAHLLIKRAE 137

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P++ PSAN SG+ S T+  H++     K + +IIDGG   +G+EST++++  EK   IL
Sbjct: 138 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGVESTVLDL-TEKVPVIL 195

Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL--------- 238
           RPG + +E L+  I +VE++  +     E   P+SPGM   HY+P ++V +         
Sbjct: 196 RPGAVTLEMLREVIGNVEVDPSLLKKPQEDLKPKSPGMKYKHYSPNAEVYIVTGDLEKVV 255

Query: 239 RAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           + I     E L     V I          E   I + +    + +  A NLF  ++  D 
Sbjct: 256 KKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEI-IVVGDRNRPETIAKNLFEVLRQFDK 314

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   I   S     +G+AI NRLE+AA 
Sbjct: 315 KGVDVIFAESFEYDNIGLAIMNRLEKAAG 343


>gi|116513793|ref|YP_812699.1| putative translation factor (SUA5) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093108|gb|ABJ58261.1| translation factor SUA5 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125451|gb|ADY84781.1| Putative translation factor SUA5 family [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 331

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 163/331 (49%), Gaps = 36/331 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +A PTETVYGL   +    +++++Y  K RP+ NPLI  V+D +M++
Sbjct: 11  LDEAVSLLREGGLVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLIVTVADEAMMR 70

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128
            +A   P  +  L K FWPGPLT++  LL+     P S T  L T  FR P    T  LI
Sbjct: 71  PYAKEVPERAEKLIKHFWPGPLTIL--LLAKEGALPESVTGGLPTVAFRCPDDQLTHDLI 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G+P+  PSAN S + S T  +H+    +  +I  I+DGG +++GLESTIV++     
Sbjct: 129 AKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLESTIVDLSVNPA 187

Query: 189 VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           V +LRPG +  E + + +  E+      V +   P++PGM   HYAP +QV +    V+ 
Sbjct: 188 V-VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYV----VDQ 242

Query: 246 REALIRFG---------------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
            E   +                 N+P+   EN     NL K   L EA  NLF  ++  D
Sbjct: 243 AETFAKLDLDASCGVMATSDLLENLPVPE-EN---KFNLGKN--LTEADHNLFAGLRYFD 296

Query: 291 DSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
           D     SI           +A  NRL +AA 
Sbjct: 297 DRPEIKSIYVEGFDQGEESLAYMNRLNKAAG 327


>gi|302669642|ref|YP_003829602.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302394115|gb|ADL33020.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus
           B316]
          Length = 340

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 172/335 (51%), Gaps = 33/335 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DI 67
            L++A + +  G  +A PTETVYGL  D+ NP + +++Y  K RP+ NPLI HV+   D+
Sbjct: 8   GLKRAGQIIRDGGLVAFPTETVYGLGGDALNPMSSKKIYAAKGRPSDNPLIVHVANMDDL 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTK 125
           + + K   V   +  LA  FWPGPLT++++     D  P  +T  L T   R+P      
Sbjct: 68  AGIVKE--VPEAARKLADAFWPGPLTMIMN---KNDKVPYETTGGLDTVAIRMPNNKIAL 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G  +A PSAN SG+ S T  ++ +   +  +I +IIDGG   IGLESTIV++  
Sbjct: 123 ELIRQSGGYIAAPSANTSGRPSPTVARYCV-EDLSGKIEMIIDGGQVGIGLESTIVDLTS 181

Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYCVDETST--PQSPGMLKSHYAPRSQVRL-- 238
              + ILRPG +  + LK     IS++ +  +D  ST  P++PGM   HYAP+  + +  
Sbjct: 182 PVPM-ILRPGYITAQMLKDVLGEISID-KTIIDSKSTERPKAPGMKYKHYAPKGDLMIVQ 239

Query: 239 -----RAIHVNPREALI-----RFGNVP---IKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                   ++N + AL      R G +     + +  A +  ++      +  A  LF  
Sbjct: 240 GAQEQVVSYINEQSALAASEGKRVGIIATDTTRELYKADVVKSVGNRQDERTIAHELFKV 299

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD     +   S  + G+G AI NRL +AA 
Sbjct: 300 LREFDDENIDVMFSESFDDSGIGQAIMNRLLKAAG 334


>gi|332637162|ref|ZP_08416025.1| SUA5 family translation factor [Weissella cibaria KACC 11862]
          Length = 342

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 164/336 (48%), Gaps = 20/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++ L  A   +  G  +A PTETVYGL  D+ N  A+ ++Y  K RP+ NPL
Sbjct: 1   MAETKIWSADELPAAVRAIKRGSLVAFPTETVYGLGADAFNEKAVSKVYAAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+D + V + A V+  +  L   FWPGPLT++L +   T +    T  L T   R+P
Sbjct: 61  IVHVADKAQVDRFAVVNAWAEKLMDAFWPGPLTMILPVKPGT-VSTTVTGGLDTVAARMP 119

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T+ LI     P+  PSAN SG+ S T  +H+    +  +I  I+D G +KIG+EST
Sbjct: 120 DNDVTRALIREADAPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGILDDGATKIGVEST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
           ++++  +    +LRPG +    ++  + V ++     VD    P++PGM   HYAP   V
Sbjct: 179 VIDLSTDTPA-VLRPGKITPAQIEAVLGVPVDSEIKHVDADEAPKAPGMKYRHYAPDKDV 237

Query: 237 RLRAIHVNPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
            + A   +  +A+I              N  I   + A +    S       AA  LF  
Sbjct: 238 YMVAPE-DWTQAIIWAQSQLEPVGLMLTNDLIVQHQLAGMDFVWSLGDNGDTAAAKLFAG 296

Query: 286 MKIADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD     ++  +++PN     A NNRL +++ 
Sbjct: 297 LRHFDDRKDVLTVLVAAMPNTPENSAYNNRLGKSSG 332


>gi|82701740|ref|YP_411306.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196]
 gi|82409805|gb|ABB73914.1| translation factor SUA5 [Nitrosospira multiformis ATCC 25196]
          Length = 364

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 159/325 (48%), Gaps = 24/325 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  +A PTETVYGL  +  +P+A+ R++EIKKRP  +PLI H +D S +   A
Sbjct: 12  AAALLKKGGVVAFPTETVYGLGAEVSSPSAVARIFEIKKRPLDHPLIVHFADASRLSHWA 71

Query: 75  -SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
             V   +  LA+ FWPGPLTL+L    +  +    T    T   RVP       L+   G
Sbjct: 72  REVPQQAWRLAECFWPGPLTLILP--RSRHVPEKVTGGQDTVGLRVPDHPVALALLRELG 129

Query: 133 --HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
               LA PSANR G +S T   H+       E+ +++DGG  ++GLESTIV  + +  V 
Sbjct: 130 PDRALAAPSANRFGHVSPTTAAHV-REEFGDELDMVLDGGPCQVGLESTIVGFEGQTAV- 187

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAIH 242
           ILRPGG+++  L   +   +    +   + + PG L SHYAP + + L        RA+ 
Sbjct: 188 ILRPGGIQLAALAEVLDGNVMLSQEAERSVRVPGALPSHYAPSTPLELLPADPLWARALE 247

Query: 243 VNPREALI-------RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           +  +   +       R  ++P  + EN  +  + +   + +E A  L+  ++  D     
Sbjct: 248 LEAKGMRVAVMGWRRREHSLPRHHPENEPVVFS-AMPEEPEEYARQLYATLRRFDRGHFD 306

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            +     P     +AI +RL RA++
Sbjct: 307 RLLVEKPPETAAWVAIADRLRRASS 331


>gi|291561899|emb|CBL40702.1| Sua5/YciO/YrdC/YwlC family protein [butyrate-producing bacterium
           SS3/4]
          Length = 356

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 165/336 (49%), Gaps = 34/336 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI--- 67
            L +A E L  G  +A PTETVYGL  ++ N  A +++Y  K RP+ NPLI H+S +   
Sbjct: 23  GLLEAAEILKNGGLVAFPTETVYGLGANALNEEAAKKIYAAKGRPSDNPLIAHISCMEEL 82

Query: 68  -SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
            ++VK+   +      LA+ +WPGPLT++       DI P  +T  L T   R+P     
Sbjct: 83  PAIVKE---IPEAGRKLAEKYWPGPLTMI---FPKKDIVPYGTTGGLDTVAVRMPVDPVA 136

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G P+A PSAN SG+ S T  +H++     K I +IIDGG   IG+ESTIV+V 
Sbjct: 137 NCLIHLAGVPIAAPSANTSGRPSPTKAEHVIEDMDGK-IEMIIDGGAVGIGVESTIVDVS 195

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGMLKSHYAPRSQVRLR 239
            E    +LRPG + IE L+  +  V+++      V     P++PGM   HYAP++ + L 
Sbjct: 196 GEIPT-LLRPGAITIEMLRETLGQVDIDPVILGPVSGDIKPKAPGMKYRHYAPKADMTLV 254

Query: 240 AIHVNPREALI------------RFGNVPIKNIENAIISLNLSKTGKLKE---AAFNLFN 284
              ++   A I            + G +  +  ++     NL   G  +     A NLF 
Sbjct: 255 EGDMDKVVAYINEQTKKAEAEGKKVGIICTEESQDMYQGGNLEVIGSREHEETVAHNLFA 314

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D      I   S     LG AI NRL +AA 
Sbjct: 315 VLRDFDARKVDCIFSESFSKDQLGQAIMNRLCKAAG 350


>gi|154297352|ref|XP_001549103.1| hypothetical protein BC1G_12080 [Botryotinia fuckeliana B05.10]
 gi|150858585|gb|EDN33777.1| hypothetical protein BC1G_12080 [Botryotinia fuckeliana B05.10]
          Length = 334

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 141/250 (56%), Gaps = 23/250 (9%)

Query: 10  NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            ++ +A E+L    +P+A PTETVYGL  D+    A++ +Y+ K RP+ NPLI HV D++
Sbjct: 45  QSVAEAAEYLKTQSIPVAFPTETVYGLGADATRSDAVKGIYKAKGRPSDNPLIIHVCDLT 104

Query: 69  MVK------KHASVDP-------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           M++       + SVD        +   L K FWPGPLT++L   S + + P  TA L T 
Sbjct: 105 MLRSLLTSTDNQSVDADFSEIPDIYKPLIKRFWPGPLTVLLPNPSPSKLAPEVTAGLPTF 164

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P       LI   G PLA PSAN S + S T  +H+    +   I +I+DGG  ++
Sbjct: 165 GARMPSSPLALSLIRLAGVPLAAPSANASTKPSCTTAQHV-HHDLDGRIEIILDGGACQV 223

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETS----TPQSPGMLKS 228
           G+EST+V+  C+  V +LRPGG+ I+ ++     E  ++   D++      P++PGM   
Sbjct: 224 GVESTVVDGMCDPPV-VLRPGGVSIDEIRECPGWEGVVKGYKDQSEIGDKAPRAPGMKYK 282

Query: 229 HYAPRSQVRL 238
           HY+P+++V L
Sbjct: 283 HYSPKAKVIL 292


>gi|167038769|ref|YP_001661754.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514]
 gi|300913646|ref|ZP_07130963.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561]
 gi|307723339|ref|YP_003903090.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513]
 gi|166853009|gb|ABY91418.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514]
 gi|300890331|gb|EFK85476.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561]
 gi|307580400|gb|ADN53799.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513]
          Length = 354

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 166/334 (49%), Gaps = 28/334 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + +  G  +A PTETVYG+  +S N  AI++++  K RP  NPLI H++++  +    
Sbjct: 20  AAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRPQDNPLIVHIAELEQIYDLV 79

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
              P     L K FWPGPLTL+     +  +  ++TA + T   R+P       LI+   
Sbjct: 80  KEVPQKAKTLMKKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSNTIAHLLIKRAE 137

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P++ PSAN SG+ S T+  H++     K + +IIDGG   +G+EST++++  EK   IL
Sbjct: 138 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGVESTVLDL-TEKVPVIL 195

Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL--------- 238
           RPG + +E LK  I +VE++  +     E   P+SPGM   HY+P ++V +         
Sbjct: 196 RPGAVTLEMLKEVIGNVEVDPSLLKKPKEDLKPKSPGMKYKHYSPNAEVYIVTGDLEKVV 255

Query: 239 RAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           + I     E L     V I          E   I + +    + +  A NLF  ++  D 
Sbjct: 256 KKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEI-IVVGDRNRPETIAKNLFAVLRQFDK 314

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            G   I   S     +G+AI NRLE+AA  +  S
Sbjct: 315 KGVDVIFAESFGYDNIGLAIMNRLEKAAGYKEIS 348


>gi|255658857|ref|ZP_05404266.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM
           20544]
 gi|260849260|gb|EEX69267.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM
           20544]
          Length = 352

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 168/346 (48%), Gaps = 31/346 (8%)

Query: 2   QIMSITDSNALR----KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I++ITD  A R    +A + L  G  +A PTETVYGL  +  +  A  R+YE K RP+ 
Sbjct: 4   EIITITDVKAQREELARAGKVLRGGGLVAFPTETVYGLGANGLDAAACARIYEAKGRPSD 63

Query: 58  NPLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI HVSD +MV+   A V P++  L   F PGP+TL+L   +   +    T  L T  
Sbjct: 64  NPLILHVSDRAMVEMIAAEVTPMAEKLLAAFMPGPITLILRRKAI--VPDRITGGLDTVG 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + +I   G P+A PSAN SG+ S T    +L   +   IPLI+DGG    G
Sbjct: 122 IRMPEHPVARAMIRAAGVPIAAPSANISGRPSPTTAASVL-RDMDGRIPLILDGGPCHFG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELE-YCVDETSTPQSPGMLKSHYAPR 233
           +ESTIV+      V ILRPG +  E L   +   +L+   V   + P++PGM   HYAP+
Sbjct: 181 VESTIVDCTGPVAV-ILRPGAITREMLTEVLGGCKLDPALVGADTVPRAPGMKYKHYAPK 239

Query: 234 SQVRLRAIHVNPREALIR------------FGNVPIKNIENAIISL-------NLSKTGK 274
           + + L         A  R             G +    +  ++  L       +    G 
Sbjct: 240 APLTLLEGDAAKMAAAFRRQVRRLQGEGHTVGVLASHEVCESLQDLVPEELLKDYGPQGD 299

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L   A +++  +   +D+ A  +        GLG+AI NRL +A+A
Sbjct: 300 LLAIAAHIYEELIAFNDTQADVLLGEGTTEKGLGLAIMNRLHKASA 345


>gi|238853676|ref|ZP_04644044.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4]
 gi|238833714|gb|EEQ25983.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4]
          Length = 330

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/320 (35%), Positives = 160/320 (50%), Gaps = 20/320 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPLI  VSD  M++ +
Sbjct: 13  EAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENY 72

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
            +  P  +  L K FWPGPLT++L +   T +    T  L TA FR P    T  LI   
Sbjct: 73  VNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRCPDDELTHDLISEL 131

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+  PSAN S + S T   H+    +  +I  IID G ++IGLESTIV++  E    +
Sbjct: 132 GKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLESTIVDLSVETPT-V 189

Query: 192 LRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           LRPG +  E + + +  E+      T T   P++PGM   HYAP + V +    V+  E 
Sbjct: 190 LRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAPVFI----VDKEED 245

Query: 249 LIRF------GNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASSIAFSS 301
             +       G   +  + + I S N    G  + +AA NLF  ++  D        +  
Sbjct: 246 FSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDSENNIKRIYVQ 305

Query: 302 IPNHG-LGIAINNRLERAAA 320
             +HG +  A  NRL +AAA
Sbjct: 306 GFDHGTISPAYMNRLNKAAA 325


>gi|164427896|ref|XP_001728416.1| hypothetical protein NCU11234 [Neurospora crassa OR74A]
 gi|157071926|gb|EDO65325.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 449

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 133/245 (54%), Gaps = 22/245 (8%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS------- 75
           +P+A PTETVYGL  D+    A++ +Y  K RP+ NPLI HV D+SM++   S       
Sbjct: 69  IPVAFPTETVYGLGADATRSAAVKGIYAAKGRPSDNPLIVHVCDLSMLRSFISPSFSSAG 128

Query: 76  --VDPLS--LH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
              DP+    H L   FWPGPLT++L   S + + P  TA L T   R+P     + LI+
Sbjct: 129 DEEDPIPAIYHPLITRFWPGPLTILLPNPSPSLLAPEVTAGLPTFGCRMPASALARSLIK 188

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN S + S T  +H+L   +   I LI+DGG   +G+EST+V+  C   V
Sbjct: 189 LANAPLAAPSANASTKPSPTAAQHVL-DDLRGRIALILDGGSCSVGVESTVVDGLCSPPV 247

Query: 190 RILRPGGLEIETL---KRAISVELEYC----VDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            +LRPGG+ +E +   K    VE  Y     V   + P++PGM   HY+P+++V L    
Sbjct: 248 -VLRPGGVSLEEIRECKGWEGVEKAYKDQAEVGGKTAPRAPGMKYKHYSPKARVVLYEAE 306

Query: 243 VNPRE 247
              RE
Sbjct: 307 GGRRE 311


>gi|253681142|ref|ZP_04861945.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum D str.
           1873]
 gi|253562991|gb|EES92437.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum D str.
           1873]
          Length = 349

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 170/338 (50%), Gaps = 33/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A + L  G  +A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DVKVIEEAGKALREGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVHIADF 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
           ++      +  ++  + K FWPGPLT+++    +  I  +++A L++   R+P     ++
Sbjct: 74  NLDNLVEEIPVIAKKIMKKFWPGPLTIIMK--KSNKIPYVTSAGLESVGIRMPSNVVARE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ S TN++  +   +   +  II G    +GLESTIV+    
Sbjct: 132 LIKKSGVPIAAPSANISGKPSPTNIERCI-EDLNGRVEYIIGGEKCDVGLESTIVDCTVN 190

Query: 187 KKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
               +LRPGG+ +E L+       I   +    D+   P++PGM   HYAP++ V++ A 
Sbjct: 191 PPC-VLRPGGITLEMLREIEPEIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVKIIAG 249

Query: 242 HVNPREALIRFGNVPIKN-------------------IENAIISLNLSKTGKLKEAAFNL 282
           +++   A I   N  ++N                     NAII  +L     L   A NL
Sbjct: 250 NLSKSIAKI---NEMVQNYIDDGKKVGIMATEETRFKYSNAIIK-SLGSRNDLYSIAHNL 305

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  +   D+     I   +     +GIAI NRL++AA 
Sbjct: 306 FKILSEFDNENVDIILSEAFQEEEIGIAIMNRLKKAAG 343


>gi|329768870|ref|ZP_08260298.1| hypothetical protein HMPREF0433_00062 [Gemella sanguinis M325]
 gi|328837233|gb|EGF86870.1| hypothetical protein HMPREF0433_00062 [Gemella sanguinis M325]
          Length = 343

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 173/332 (52%), Gaps = 29/332 (8%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +K  ++  +   +AIPTETVYGL+ D+ +  AI ++YE K RP+ NPLI H  D+  +  
Sbjct: 19  KKLQQYYKSDKLVAIPTETVYGLSADATSDKAISKIYEAKGRPSDNPLIVHFYDVKQLDN 78

Query: 73  --HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               + D + + + K FWPGP+TL+L+ +    I    TA L T   R+P   T +++++
Sbjct: 79  IVDYADDRVGILIDK-FWPGPMTLILNAIENNGISNNVTAGLNTLAVRMPSNTTAREILK 137

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK- 188
                LA PSAN SG+ S T  +H+    + ++I +II+   S IGLEST+++  C K  
Sbjct: 138 ETQVLLAAPSANTSGKPSPTKYEHVY-HDLNEKIDVIIEDEQSDIGLESTVID--CTKNP 194

Query: 189 VRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
           + I RPG +  E ++  +     V  +  +DE   P +PGM   HY+P +++ L   + +
Sbjct: 195 LVIARPGEITKEDIENVLGEGSVVYNDEIIDEDQAPIAPGMKYRHYSPEAELIL---YRH 251

Query: 245 PREALIRF--------GNVPIKNIENAIISLNLS------KTGKLKEAAFNLFNYMKIAD 290
             E L+          G +   N +N +  LN+S          +++++ NL+N ++  D
Sbjct: 252 SFEDLLELLKTKGKETGFITYDNYKNKLKGLNISIKYLADSEKSVEQSSKNLYNILREFD 311

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +     I    I  +   +A+ NRL +A + +
Sbjct: 312 EENIKEIYILPIKENKENVALLNRLNKAISKK 343


>gi|313888752|ref|ZP_07822414.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845229|gb|EFR32628.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 351

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 173/344 (50%), Gaps = 40/344 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++K  + L  G  + +PTETVYGL  +  N    +++YE K RP+ NPLI H++D 
Sbjct: 14  DKVYIKKISQTLRDGGLVVLPTETVYGLGGNGLNKRTCKKIYEAKGRPSDNPLILHIADN 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +    A V  ++    K FWPGPLT++     +  +   +T  L T   R P      
Sbjct: 74  SQLDDLVAEVPEVAKKCIKKFWPGPLTIIFK--RSDKVPDEATGGLDTVAIREPSNKIAH 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            ++++   P+A PSAN SG+ S T V+H++   +   + +I+DGG S +G+EST+++V  
Sbjct: 132 DILKSVDFPVAAPSANLSGRPSPTKVEHVI-EDLDGRVDIIVDGGHSVVGIESTVLDVTV 190

Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRA 240
           +  + ILRPG + +E L+     I+++    +D  S   P+SPG    HYAPR++    A
Sbjct: 191 DPPM-ILRPGKITLENLQEVDERITID-SATIDSKSHEVPKSPGQKYRHYAPRAE----A 244

Query: 241 IHVNPREALIRFGNVPIKNIEN------AIIS----------------LNLSKTGKLKEA 278
           I    R  L +  N   KNIE       A+++                +NL     L+E 
Sbjct: 245 ICFGGR--LDKLINEIKKNIEENKGKKIAVLATEETYDEYENTGVELLINLGSREHLEEV 302

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           A NLF+ ++  D+     I        G+G++I NRL +A   +
Sbjct: 303 ATNLFDALRRCDEEDIDIIFAEGFELRGMGLSIMNRLLKACGGK 346


>gi|104773787|ref|YP_618767.1| Sua5 family translation factor [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422868|emb|CAI97530.1| Putative translation factor (Sua5 family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 331

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 163/331 (49%), Gaps = 36/331 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +A PTETVYGL   +    +++++Y  K RP+ NPLI  V+D +M++
Sbjct: 11  LDEAVSLLREGGLVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPLIVTVADEAMMR 70

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128
            +A   P  +  L K FWPGPLT++  LL+     P S T  L T  FR P    T  LI
Sbjct: 71  PYAKEVPERAEKLIKHFWPGPLTIL--LLAKEGALPESVTGGLPTVAFRCPDDQLTHDLI 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G+P+  PSAN S + S T  +H+    +  +I  I+DGG +++GLESTIV++     
Sbjct: 129 AKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLESTIVDLSVNPA 187

Query: 189 VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           V +LRPG +  E + + +  E+      V +   P++PGM   HYAP +QV +    V+ 
Sbjct: 188 V-VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQVYV----VDQ 242

Query: 246 REALIRFG---------------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
            E   +                 N+P+   EN     NL K   L EA  NLF  ++  D
Sbjct: 243 AETFDKLDLDASCGVMATSDLLENLPVPE-EN---KFNLGKN--LTEADHNLFAGLRYFD 296

Query: 291 DSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
           D     SI           +A  NRL +AA 
Sbjct: 297 DRPEIKSIYVEGFDQGEESLAYMNRLNKAAG 327


>gi|256751355|ref|ZP_05492234.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749737|gb|EEU62762.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 354

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 164/329 (49%), Gaps = 28/329 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + +  G  +A PTETVYG+  +S N  A+++++  K RP  NPLI H++++  +    
Sbjct: 20  AAKVIKEGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRPQDNPLIVHIAELEQIYDLV 79

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
              P     L K FWPGPLTL+     +  +  ++TA + T   R+P       LI+   
Sbjct: 80  KEVPQKAKTLMKKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSNTIAHLLIKRAE 137

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P++ PSAN SG+ S T+  H++     K + +IIDGG   +G+EST++++  EK   IL
Sbjct: 138 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGVESTVLDL-TEKVPVIL 195

Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL--------- 238
           RPG + +E L+  I +VE++  +     E   P+SPGM   HY+P ++V +         
Sbjct: 196 RPGAVTLEMLREVIGNVEVDPSLLKKPQEDLKPKSPGMKYKHYSPNAEVYIVTGDLEKVV 255

Query: 239 RAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           + I     E L     V I          E   I + +    + +  A NLF  ++  D 
Sbjct: 256 KKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEI-IVVGDRNRPETIAKNLFEVLRQFDK 314

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   I   S     +G+AI NRLE+AA 
Sbjct: 315 KGVDVIFAESFEYDNIGLAIMNRLEKAAG 343


>gi|227824239|ref|ZP_03989071.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904738|gb|EEH90656.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 350

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 163/320 (50%), Gaps = 34/320 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHASVDPLSL 81
           +A PTETVYGL  +  +  A R+++  K RPA NPLI H++   D+  + K  S  P++ 
Sbjct: 8   VAFPTETVYGLGANGLDGMACRKIFAAKGRPADNPLILHIAEKEDMEALTKGLS--PMAQ 65

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L + FWPGP+TL++    +  I  + TA L T   R P     + LI   G P+A PSA
Sbjct: 66  ALMEAFWPGPMTLIVP--KSDKIPDVVTAGLDTVAVRFPSHPVARDLIRAAGCPIAAPSA 123

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N+SG+ S T  + +L   +   I  ++DGG   IG+ESTI++   +  V ILRPGG+  E
Sbjct: 124 NKSGKPSPTTAQDVL-LDMDGIIAGVLDGGACDIGVESTIIDTTGKDPV-ILRPGGITRE 181

Query: 201 TLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA---LIRFG-N 254
            +K A+  V L+   V +  TP++PGM   HYAP + + L    V   EA   LIR    
Sbjct: 182 MIKMAMGRVALDPGLVKKGETPKAPGMKYRHYAPTAPMLL----VEGPEASLGLIRLAIM 237

Query: 255 VPIKNIENAIISL-----NLSKTGK---------LKEAAFNLFNYMKIADDSGASSIAFS 300
                +   +I+L     +  K G          L+  A  LF+ ++  D  G   I   
Sbjct: 238 AEAHGLRTGVIALKATVDHFPKGGNFVIHNGGATLEAYAGTLFHDLRAFDSEGVDLILGE 297

Query: 301 SIPNHGLGIAINNRLERAAA 320
            +    +G+AI NRL ++A 
Sbjct: 298 GVREDQMGLAIMNRLRKSAG 317


>gi|312127871|ref|YP_003992745.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777890|gb|ADQ07376.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 348

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 162/335 (48%), Gaps = 27/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI HVS  
Sbjct: 12  DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHVSSK 71

Query: 68  SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M++  A + D     L + FWPGPLT+VL       I    TA L T   R+P      
Sbjct: 72  EMLEMCAEITDERVYMLIERFWPGPLTIVLP--KKNVIADNVTAGLSTVGVRMPANKIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN SG+ S T  KH++   + K + +IIDGG    GLEST+V++  
Sbjct: 130 ELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMGK-VDIIIDGGKCSFGLESTVVDLSG 188

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST---PQSPGMLKSHYAP-------RS 234
           EK V ILRPG +    LK  + ++E    V E  T   P+SPGM   HYAP       + 
Sbjct: 189 EKAV-ILRPGAISYFALKEVLGNIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVKG 247

Query: 235 QVRLRAIHVNPREALIRFGN---------VPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           ++  R   +N  +  + F             + N ++    L L      KE   NLF+ 
Sbjct: 248 RIDKRIDKINEMKKKLEFKGHRVGILCFYETVHNFDSQ-YKLILGSMFDAKECERNLFSI 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  +  G   I       +   +A+ NRL +AAA
Sbjct: 307 LRKFNQLGVDYILCEWGEFNLEFLALENRLYKAAA 341


>gi|255941190|ref|XP_002561364.1| Pc16g10540 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585987|emb|CAP93724.1| Pc16g10540 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 507

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 143/262 (54%), Gaps = 26/262 (9%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +S A+ +A + L  + +P+A PTETVYGL  D+   ++++ +Y  K+RP+ NPLI HV  
Sbjct: 112 ESQAIEEAVKLLRSSDIPVAFPTETVYGLGADATRSSSVQGIYRAKQRPSDNPLIVHVDS 171

Query: 67  ISMVKK-----------HASVDPLSL-----HLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           + M+++                P++L      L   FWPGPLT++L   S + + P  T+
Sbjct: 172 LDMLERLLNPTPQGSPSSTKTPPIALPSIYKPLIDRFWPGPLTIILPNPSGSILAPEVTS 231

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +L T   R+P     + LI     PLA PSAN S + S T  +H+    +   I +I+DG
Sbjct: 232 SLTTFGVRMPSSPLARLLIHAADRPLAAPSANASTKPSPTTAQHVY-HDLKDRIDMILDG 290

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSP 223
           G S +G+EST+V+  C+  V +LRPGG+ I+ +++    E       +  +D    P++P
Sbjct: 291 GASGVGVESTVVDGLCDPPV-VLRPGGIGIDEIRKCEGWENVTVGYKDGTLDVKEVPRAP 349

Query: 224 GMLKSHYAPRSQVRLRAIHVNP 245
           GM   HY+P+++V L     NP
Sbjct: 350 GMKYRHYSPKARVVLFEPTSNP 371


>gi|227873768|ref|ZP_03991997.1| Sua5/YciO/YrdC/YwlC family protein [Oribacterium sinus F0268]
 gi|227840384|gb|EEJ50785.1| Sua5/YciO/YrdC/YwlC family protein [Oribacterium sinus F0268]
          Length = 367

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 168/364 (46%), Gaps = 52/364 (14%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     + +A E L  G  +A PTETVYGL  +  +  A +++Y  K RP+ NPLI HVS
Sbjct: 5   IFGKEGISEAAEILKGGGLVAFPTETVYGLGGNGLDKEAAKKIYAAKGRPSDNPLILHVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVP-CG 122
            I  V       P  +  L + FWPGPLTLV   L  +D+ P  ST  L+T   R P   
Sbjct: 65  SIEEVYPLVKALPEKAKKLMEAFWPGPLTLV---LPKSDLVPKESTGGLETVALRSPENA 121

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T  LI   G P+A PSAN SG+ S T   H+    +   I  I++ G   IG+ESTIV+
Sbjct: 122 LTLSLIRACGFPIAGPSANLSGRPSPTEASHVF-EDLGGRIEGILEDGAVGIGVESTIVD 180

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE-------LEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +  E    +LRPG + IE L+  +  +       L   + E   P++PGM   HYAP+++
Sbjct: 181 LS-ENCPTLLRPGAITIEDLEEVLGEKVAIDPTLLGKSMAEGFIPKAPGMKYRHYAPKAE 239

Query: 236 VRL--------RAIHVNP----------REALIRFGNVPIKNI-ENAIISLNLSKTGKLK 276
           + L        ++  VN            ++++ +G   + +  E  I  L    T  L 
Sbjct: 240 MILFKKNLLSDQSQKVNEIPYGEEKKLIAKSILSYGAKELSDCPERKIWILCGEDTASLY 299

Query: 277 EA------------------AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           E                     NLF  ++ AD+ G   I        G+G A+ NR+++A
Sbjct: 300 EGDSRFTVKILGRREEPLSMTHNLFRLLRQADEEGVELILGECYSEEGVGFALMNRMKKA 359

Query: 319 AAPR 322
           A  R
Sbjct: 360 AGQR 363


>gi|46107246|ref|XP_380682.1| hypothetical protein FG00506.1 [Gibberella zeae PH-1]
          Length = 433

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 136/260 (52%), Gaps = 17/260 (6%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH- 73
           A E      P+A PTETVYGL  D+    +++ +Y  K RP+ NPLI HV D+ M++++ 
Sbjct: 46  AHELRTTDTPVAFPTETVYGLGADATRTPSVKGIYSAKGRPSDNPLISHVCDLDMLRQYI 105

Query: 74  ----ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
                + DP+      L   FWPGPLT++L     + + P  TA LKT   R+P      
Sbjct: 106 GHTDETQDPIPERYRALIERFWPGPLTILLPNPVPSKLAPEVTAGLKTFGVRMPSSPLAL 165

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G PLA PSAN S + S T  +H+    +   I LI+DGG  ++G+EST+V+  C
Sbjct: 166 SLIKLAGVPLAAPSANASTKPSPTAAQHV-KDDLDGRIELILDGGHCQVGVESTVVDGLC 224

Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +  V +LRPGGL ++ L+     E       +   +  + P++PGM   HY+P++ V L 
Sbjct: 225 DPPV-VLRPGGLGMDELRTCPGWENATIAYKDKSEEGKAAPRAPGMKYKHYSPKATVVLY 283

Query: 240 AIHVNPREALIRFGNVPIKN 259
               +     I   N  + N
Sbjct: 284 ESSFDKGGDGIALSNFEVSN 303


>gi|312622677|ref|YP_004024290.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203144|gb|ADQ46471.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 348

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 163/336 (48%), Gaps = 29/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S  
Sbjct: 12  DYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHISSK 71

Query: 68  SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M++  A + D     L ++FWPGPLT+VL       I    TA L T   R+P      
Sbjct: 72  DMLEMCAEITDDRVYMLIEMFWPGPLTIVLP--KKNVIAENVTAGLSTVGVRMPANKIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN SG+ S T  KH++   + K I +IIDGG    GLEST+V++  
Sbjct: 130 ELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMGK-IDIIIDGGKCSFGLESTVVDLSG 188

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAP-------RS 234
           E+ + ILRPG +    LK  +  +E    V E  T   P+SPGM   HYAP       + 
Sbjct: 189 ERPL-ILRPGAISYFALKEVLGDIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVKG 247

Query: 235 QVRLRAIHVNPREALIRFGNVPI---------KNIENAIISLNLSKTGKLKEAAFNLFNY 285
           ++  R   +N  +  + F    +          N E+    L L      KE   NLF+ 
Sbjct: 248 RIDKRIDKINEIKKRLEFKGHKVGILCFYETAHNFESQ-YKLILGSMFDAKECGRNLFSI 306

Query: 286 MKIADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320
           ++  +  G   I      N  L  +A+ NRL +AAA
Sbjct: 307 LRKFNQLGVDYI-LCEWGNFDLEFLALENRLYKAAA 341


>gi|190345038|gb|EDK36848.2| hypothetical protein PGUG_00946 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 403

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 165/328 (50%), Gaps = 39/328 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PTETVYGL   + +  +++ +Y+ K RPA NPLI HVS IS +K+   + P +  + 
Sbjct: 75  IGFPTETVYGLGGSALSDESVKSIYKAKNRPADNPLIVHVSSISQLKR--KILPPNYQIP 132

Query: 85  KL-------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
           K+       FWPGPLT++L +  ++ I    TA   T   R+P     + LI     PLA
Sbjct: 133 KVYESLIHKFWPGPLTILLPVHESSPISKFVTAGQSTFAVRIPQHPVARALIALSDTPLA 192

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN S + S T   H+  + +   IP I+DGG    G+EST+V+   +  + +LRPGG
Sbjct: 193 APSANASTRPSPTIASHVY-NDLQGRIPYILDGGSCDFGVESTVVDGLVDPPM-LLRPGG 250

Query: 197 LEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           + +E +K          V  +    +T   ++PGM   HY+P ++V L     + +EA+ 
Sbjct: 251 VSLEEIKSVGGEPWKDVVVAKKTAGKTEAVRTPGMKYRHYSPTARVVLFVNCGDGKEAID 310

Query: 251 RFGNVPIKNIENAIISL-------NLSKTGKLKEA------------AFNLFNYMKIADD 291
            +  +   N+++  I+L        +S T   KE+            + NLF Y++  D+
Sbjct: 311 NY--ISSHNLQDCKIALLKSRHFVGISSTSANKESIDRELGTDGHTISHNLFRYLREVDE 368

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
           +G   I    I     G+A+ NRL +AA
Sbjct: 369 TGVDMIFVEGIEETNEGLAVMNRLSKAA 396


>gi|289577391|ref|YP_003476018.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter italicus
           Ab9]
 gi|289527104|gb|ADD01456.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter italicus
           Ab9]
          Length = 354

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 171/335 (51%), Gaps = 30/335 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + +  G  +A PTETVYG+  +S +  A+++++ +K RP  NPLI H++++  +    
Sbjct: 20  AAKVIREGGLVAFPTETVYGIGANSFDEEAVKKIFMVKGRPQDNPLIVHIAELEQIYDLV 79

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
              P     L + FWPGPLTL+     +  +  ++TA + T   R+P       LI+   
Sbjct: 80  EEIPQKAKILMEKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSDTIAHLLIKRAK 137

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P++ PSAN SG+ S T+  H++   +  ++ +IIDGG    G+EST++++  EK   +L
Sbjct: 138 VPISAPSANVSGKPSPTDASHVV-EDLDGKVDIIIDGGKCDFGVESTVLDL-TEKMPVVL 195

Query: 193 RPGGLEIETLKRAI-SVELEYCVDETS----TPQSPGMLKSHYAPRSQVRLRAIHVNP-- 245
           RPG + +E LK  I +VE++  + +       P+SPGM   HY+P ++V +   H+    
Sbjct: 196 RPGAVTLEMLKEVIGNVEVDPSLLKKPKGNLKPKSPGMKYKHYSPNAEVYIVKGHLKKVV 255

Query: 246 ------REALIRFGNVPIKNIENAIISLNLSKTGKL---------KEAAFNLFNYMKIAD 290
                  E  +++G      I   + +    K G++         +  A NLF  ++  D
Sbjct: 256 KKIQELTEEQLKYGKKV--GIMATVQTSTQYKKGEIIVVGDRNRPETIAKNLFAVLRQFD 313

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             G   I   S   + +G+AI NRLE+AA  +  S
Sbjct: 314 KKGVDVIFAESFEYNNIGLAIMNRLEKAAGYKEIS 348


>gi|218290081|ref|ZP_03494248.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239915|gb|EED07103.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 360

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 172/348 (49%), Gaps = 48/348 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI---- 67
           LR+  + L  G  +A PTETVYGL  ++    A+RR++  K+RP  NPLI H++D     
Sbjct: 19  LREPAQSLRRGGLVAFPTETVYGLGANALEEEAVRRIFAAKERPRDNPLIVHIADDDQLR 78

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCG-FT 124
            ++ ++  +   ++ L + FWPGPLTL+L   +     +HP           R+P     
Sbjct: 79  DVIDENQPLHEDAVRLMRAFWPGPLTLLLPAGARLAPSVHP----GQPLVGVRMPDHPVA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G P+A PSANRSG+ S T    + ++ +   I  ++DGG   IG+EST++ ++
Sbjct: 135 RALIAEAGVPVAAPSANRSGRPSPTTPDDV-AADLDGRIDWLVDGGPCPIGVESTVLLLE 193

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVR---- 237
            +   RILRPGG+  E +   I   + Y     D  S P +PGM   HYAP ++V     
Sbjct: 194 PD-CARILRPGGVTQEMIASVIDRPVLYAADVFDVASAPLAPGMKYRHYAPNARVHVWWG 252

Query: 238 -------------LRAIH---------VNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275
                        L A+          + P + + RFG       + A+ +   +     
Sbjct: 253 EPEAIDEAMRAFLLEAVQDDDLIVPALIAPADFVRRFGWALSDERQAALPADTYA----- 307

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAAAPR 322
           +E A +L+  ++  D +GA+ +    + P HG+G A+ NRL +A+A R
Sbjct: 308 EELARHLYRLLRAFDRAGATDVLVHGVDPTHGVGAAVMNRLYKASAGR 355


>gi|258614609|ref|ZP_05712379.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO]
          Length = 231

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 8/224 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPLI HV+  
Sbjct: 7   DETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             VK++  +  P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T 
Sbjct: 67  EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRIPDNKKTL 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++  
Sbjct: 126 EVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSD 184

Query: 186 EKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGM 225
              +  ILRPG +  E ++  I   +   ++ V E  TP++PGM
Sbjct: 185 PTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGM 228


>gi|39958882|ref|XP_364450.1| hypothetical protein MGG_09295 [Magnaporthe oryzae 70-15]
 gi|145013245|gb|EDJ97886.1| hypothetical protein MGG_09295 [Magnaporthe oryzae 70-15]
          Length = 461

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 175/396 (44%), Gaps = 88/396 (22%)

Query: 10  NALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            ALR+A ++L +  +P+  PTETVYGL  D+    A+R +Y  K RP+ NPLI HV D+ 
Sbjct: 64  GALRRAADYLGSSDIPVGFPTETVYGLGADATRSAAVRGIYAAKGRPSDNPLIVHVCDLD 123

Query: 69  MVK-----------------------------------KHASVDPLS---LHLAKLFWPG 90
           M++                                   K +  DP+    L L + FWPG
Sbjct: 124 MLRALLSPACDSGNGTNSQAVSEEAAEPATTANGMSNSKTSIDDPIPSIYLPLMERFWPG 183

Query: 91  PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149
           PLT++L     + + P  TA L T   R+P       LI   G PLA PSAN S + S T
Sbjct: 184 PLTILLPNPQPSRLAPEVTAGLPTFGARMPASPLALTLIRLAGVPLAAPSANASTRPSPT 243

Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209
              H+L   +   + LI+DGG   +G+EST+V+  C+    +LRPGG+ IE L+R    E
Sbjct: 244 TAHHVL-DDLDGRLELILDGGPCGVGVESTVVDGLCDPPA-VLRPGGVAIEDLRRCKGWE 301

Query: 210 --LEYCVDE--------TSTPQSPGMLKSHYAPRSQVRL--------------------- 238
             +    DE        ++ P++PGM   HY+PR++V L                     
Sbjct: 302 GVVRAYKDEAELGKSGKSAAPRAPGMKYKHYSPRAKVVLYEAGFGGGAEGDRVREDLDAG 361

Query: 239 ------------RAIHVNPREALIRFGNVPIK--NIENAIISLNLSKTGKLKEAAFNLFN 284
                       R   V  R +  + G   ++   IE+    L+L      K+ A  LF+
Sbjct: 362 RLVVGEDARRPARLGVVRTRSSGDKAGERSVEEYQIEDGTTVLDLHLGRDPKDVAQGLFS 421

Query: 285 YMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAA 319
            ++  D   A  I    + +   +  A+ NRL +AA
Sbjct: 422 ALRELDTRTADVICVEGVGDGDDIAAAVMNRLRKAA 457


>gi|261252205|ref|ZP_05944778.1| YrdC family protein [Vibrio orientalis CIP 102891]
 gi|260935596|gb|EEX91585.1| YrdC family protein [Vibrio orientalis CIP 102891]
          Length = 319

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 167/323 (51%), Gaps = 17/323 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q +S ++S  + +A E L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI
Sbjct: 4   QHLSASNSKDIEQAKEILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLI 63

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+  +  +   A+  P   + +A  +WPGP+TL+L+        P+ T  L+T   R+P
Sbjct: 64  VHIGSVEQLTDWATDIPQEAYTIASAYWPGPVTLLLN--KAEQATPVVTGGLETIGVRMP 121

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  + + G  +A PSAN   ++S T+ +H++ +S+  +I  ++DGG    GLESTI
Sbjct: 122 AHDVFASLLSSGMAVAAPSANPYKKLSPTSAQHVM-NSLGGKIAAVLDGGDCVHGLESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +++  ++  R+LR G +    L   +  E+     +      PG + SHY P ++VRL  
Sbjct: 181 IDL-TQRPFRVLRTGPVTATQLSETLGKEV--LAPKAHAVAVPGNVTSHYQPNTKVRL-- 235

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL-----KEAAFNLFNYMKIADDSGAS 295
             V+  +     GN  I  +  + I  +L    KL      + + +L+  +  AD  G  
Sbjct: 236 --VDLSDIQSANGN-NIACLHYSAIEASLGFKSKLMPQDVAQYSHDLYRALDEADKWGCD 292

Query: 296 SIAFSSIPNHGLGIAINNRLERA 318
            I     P      A+++RL RA
Sbjct: 293 EIWVERPPVSEAWFAVHDRLNRA 315


>gi|168333894|ref|ZP_02692132.1| hypothetical protein Epulo_03232 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 334

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 169/345 (48%), Gaps = 43/345 (12%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  + ++ ++ L  A   L  G  +  PTETVYGL  ++ +  A+  +++ K RPA NPL
Sbjct: 1   MDTIILSKTDNLELAINILKNGGLVVSPTETVYGLCANALDENAVENIFKAKGRPADNPL 60

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFR 118
           I H++ ++M+ +  A +   +  L   FWPGPLTL+     + +I P  T ANL+T   R
Sbjct: 61  IVHIASLAMLDQLVAEISANAQKLIDAFWPGPLTLI---FKSQNIIPNKTRANLQTVAIR 117

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
            P      +LI+    PLA PSAN SG+ S TN+  ++     K +  IIDGG  KIGLE
Sbjct: 118 FPENKIIIELIKKSKLPLAAPSANTSGKPSPTNIDRVIEDLFGK-VDCIIDGGNCKIGLE 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           ST+V+V  +   RILRPG +    L++ +          ++ P +PGM   HYAP + V 
Sbjct: 177 STVVDVSGD-NARILRPGFITAAMLEKIVP---SVSAPASAFPIAPGMKYKHYAPSANVA 232

Query: 238 L-----------------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK 274
           +                       RA  +   E +  F ++P+         ++L     
Sbjct: 233 IVDGNDLQEIAKKICCLIKKDRHKRAGVLIVDEMISFFEDIPV---------VSLGSITN 283

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           L+  A NLF  ++  DD     +    + +  LG++I NRL +A+
Sbjct: 284 LESIASNLFEKLRQLDDLKLEQVYTIYLHDKNLGLSIMNRLLKAS 328


>gi|68471205|ref|XP_720379.1| hypothetical protein CaO19.7088 [Candida albicans SC5314]
 gi|77022446|ref|XP_888667.1| hypothetical protein CaO19_7088 [Candida albicans SC5314]
 gi|46442244|gb|EAL01535.1| hypothetical protein CaO19.7088 [Candida albicans SC5314]
 gi|76573480|dbj|BAE44564.1| hypothetical protein [Candida albicans]
          Length = 382

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 160/325 (49%), Gaps = 37/325 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81
           I  PTETVYGLA  + +  +++ +Y+ K RPA NPLI H+S I  +K+   +  +  + L
Sbjct: 56  IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L   FWPGPLT++L +   + I  L TAN  T   R+P     + LI     P+A PSA
Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N S + S T  +H+    +  +IPLI+DGG   +G+EST+++   +  + +LRPGG+ +E
Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACNVGVESTVIDGLVDPPM-LLRPGGVSLE 233

Query: 201 TLKRAISVELEYCVDETSTP------QSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
            +KR      E  V    T       ++PGM   HY+P ++V L    VN  + +    N
Sbjct: 234 DIKRVGGKLWENIVVAKKTAGKLEPVKTPGMKYRHYSPTAKVVL---FVNCGDGINAIEN 290

Query: 255 VPIKNIENA-------------------IISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
               N  +A                    I   L  TG   E + NLF Y++  D+    
Sbjct: 291 YLTNNKVDASTTKIALLKSKHFGEDHPHFIIKRLGTTG--NEISHNLFKYLREVDEEDKV 348

Query: 296 SIAF-SSIPNHGLGIAINNRLERAA 319
            + F   I     G+A+ NRL +AA
Sbjct: 349 ELIFVEGIDETNEGLAVMNRLSKAA 373


>gi|238883207|gb|EEQ46845.1| protein SUA5 [Candida albicans WO-1]
          Length = 382

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 160/325 (49%), Gaps = 37/325 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81
           I  PTETVYGLA  + +  +++ +Y+ K RPA NPLI H+S I  +K+   +  +  + L
Sbjct: 56  IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L   FWPGPLT++L +   + I  L TAN  T   R+P     + LI     P+A PSA
Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N S + S T  +H+    +  +IPLI+DGG   +G+EST+++   +  + +LRPGG+ +E
Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACDVGVESTVIDGLVDPPM-LLRPGGVSLE 233

Query: 201 TLKRAISVELEYCVDETSTP------QSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
            +KR      E  V    T       ++PGM   HY+P ++V L    VN  + +    N
Sbjct: 234 DIKRVGGKLWENIVVAKKTAGKLEPVKTPGMKYRHYSPTAKVVL---FVNCGDGINAIEN 290

Query: 255 VPIKNIENA-------------------IISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
               N  +A                    I   L  TG   E + NLF Y++  D+    
Sbjct: 291 YLTNNKVDASTTKIALLKSKHFGEDHPHFIIKRLGTTG--NEISHNLFKYLREVDEEDKV 348

Query: 296 SIAF-SSIPNHGLGIAINNRLERAA 319
            + F   I     G+A+ NRL +AA
Sbjct: 349 ELIFVEGIDETNEGLAVMNRLSKAA 373


>gi|187918590|ref|YP_001884153.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia hermsii DAH]
 gi|119861438|gb|AAX17233.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia hermsii DAH]
          Length = 336

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 164/335 (48%), Gaps = 31/335 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I + + + KA +F+  G  +  PTETVYG+  ++ N  A+R ++ +KKRP  NPLI HV
Sbjct: 7   EIIEQSEIEKAAKFIRTGELVVFPTETVYGIGANAYNDDAVRMIFLVKKRPITNPLIVHV 66

Query: 65  SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             I  + +     P S L L + F PGPLT +L   +   I  L +  L++   R+P   
Sbjct: 67  ESIEKINELVEHIPKSALILMQKFTPGPLTFILK--NAGKISNLISGGLESIAVRIPSEP 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-----SKIGLE 177
              KLI+  G P+A PSAN S + S TN K  +     KE+  ++ G I     SKIG+E
Sbjct: 125 VALKLIKISGVPIAAPSANLSRRPSATNFKMAI-----KELDGLVKGIIKKNEESKIGIE 179

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPR-- 233
           ST++    +  + ILRPG +  E ++R +  E   EY V +    +SPG L  HY PR  
Sbjct: 180 STVIGFDLKGNISILRPGSITKEMIERELKGEFRVEYSVGKEMLSKSPGNLLEHYRPRIP 239

Query: 234 -------SQVRLRAIHVNPREALIR--FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                    +R  A   + +  + R  F +       N     N+     L+E A N++ 
Sbjct: 240 VYLFKQKDNIRCYASRQDTKVLITRDTFKSYWFNGFWNM---NNICVFNTLEEYAKNIYK 296

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
              +  +     I    + N+ LG +INNRL++A+
Sbjct: 297 VF-VESEKEYKQILAEFVDNNQLGYSINNRLKKAS 330


>gi|156062334|ref|XP_001597089.1| hypothetical protein SS1G_01283 [Sclerotinia sclerotiorum 1980]
 gi|154696619|gb|EDN96357.1| hypothetical protein SS1G_01283 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 459

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 139/248 (56%), Gaps = 23/248 (9%)

Query: 12  LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           + +A E+L    +P+A PTETVYGL  D+    A++ +Y+ K RP+ NPLI HV D++M+
Sbjct: 47  IAEAAEYLKTKSIPVAFPTETVYGLGADATRSDAVKGIYKTKGRPSDNPLIIHVCDLTML 106

Query: 71  KKHAS-------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +   S             +  +   L K FWPGPLT++L   S + + P  TA L+T   
Sbjct: 107 RSLLSSTENQSSGADFPEIPEIYKPLIKCFWPGPLTILLPNPSPSKLAPEVTAGLQTFGA 166

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       LI   G PLA PSAN S + S T  +H+    +   I +I+DGG  ++G+
Sbjct: 167 RMPSSPLALSLIRLAGVPLAAPSANASTKPSCTTAEHVY-HDLNGRIEIILDGGACQVGV 225

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETS----TPQSPGMLKSHY 230
           EST+V+  C+  V +LRPGG+ I+ ++     E  ++   D++      P++PGM   HY
Sbjct: 226 ESTVVDGMCDPPV-VLRPGGVSIDEIRGCHGWERVVKGYKDQSEIGDKAPRAPGMKYKHY 284

Query: 231 APRSQVRL 238
           +P+++V L
Sbjct: 285 SPKAKVIL 292


>gi|295425484|ref|ZP_06818177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM
           11664]
 gi|295064823|gb|EFG55738.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM
           11664]
          Length = 337

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 162/330 (49%), Gaps = 22/330 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     +  A + L  G  +A PTETVYGL   + N  +++ +Y  K RP+ NPLI  VS
Sbjct: 9   IFSEEQIDDAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPLIVTVS 68

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M++++A   P  +  L K FWPGPLT++L  +    +    T  L T  FR P    
Sbjct: 69  DEDMMRRYAKEVPERAEKLIKHFWPGPLTILL-FVKPGSLPDAVTGGLDTVAFRCPDDKL 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI+  G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI+++
Sbjct: 128 THTLIKKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIIDGGPTRVGLESTIIDL 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             +  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP + V +  
Sbjct: 187 SVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKEIPKAPGMKYRHYAPSAPVMV-- 243

Query: 241 IHVNPREALIRFG---NVPIKNIENAIISLNLSKTGKLK------EAAFNLFNYMKIADD 291
             ++  E   +     N  +   +N +  ++L +  K        +A  NLF  ++  DD
Sbjct: 244 --IDHPEDFAKIDLNENTGVMATKNVLAKIDLPQENKFNLGDDLIQADHNLFGGLRYFDD 301

Query: 292 -SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                 I           +A  NRL +AAA
Sbjct: 302 KKNIHQIYVEGFDEGEASLAYMNRLNKAAA 331


>gi|168700740|ref|ZP_02733017.1| translation factor SUA5 [Gemmata obscuriglobus UQM 2246]
          Length = 331

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 160/324 (49%), Gaps = 19/324 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S+ + +A   + +G  +A PTETVYGL  +  +  A+  ++E K RP+ NPLI HVSD 
Sbjct: 14  ESDVIGRAAAVVRSGGLVAFPTETVYGLGANGLSAAAVAGIFEAKGRPSTNPLILHVSDA 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           S V   A+  P +   LA  FWPGPLTLV+       +  + TA   T   R P     +
Sbjct: 74  SEVLNVAAAWPATAQTLAARFWPGPLTLVVP--KRDSVPNIVTAGGPTVAVRCPNHAVAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G PLA PSANRS ++S T  +H+L   +   I +++DGG    GLEST+V+V  
Sbjct: 132 ALIRAAGVPLAAPSANRSTELSPTRAEHVL-KGLNGRIAIVLDGGPCSGGLESTVVDVTG 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           E   R+LRPG + +  L+ A+   +E         ++PG +  HY+PR+ + L       
Sbjct: 191 EIP-RVLRPGLITVPMLE-AVCGRVEVGTKSEGVARAPGQMVKHYSPRTPLVLVDRADEA 248

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTG---------KLKEAAFNLFNYMKIADDSGASS 296
             A      + ++ +   ++  +L  T          +  + A +L+  +   D+     
Sbjct: 249 ERARAAASRLGLRAV---VVGFDLPLTAASMYRAMMFEPDQYAADLYAVLHELDNGRYDQ 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P+     A+ +RL RAAA
Sbjct: 306 IVVEMPPDTPEWAAVRDRLTRAAA 329


>gi|302875885|ref|YP_003844518.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B]
 gi|307689318|ref|ZP_07631764.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B]
 gi|302578742|gb|ADL52754.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B]
          Length = 350

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 163/335 (48%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + LR+  E +  G  +A PTETVYGL  ++ +  A+ +++  K RP  NPLI H+S +
Sbjct: 14  EKDKLREVAEVIRNGGLVAFPTETVYGLGANAFDENAVEKIFIAKGRPQDNPLIVHISQL 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +       P S   L   FWPGP+T +L+    T I   ++A L+T   R+P     +
Sbjct: 74  DDIFPLVKEIPSSAKMLMDNFWPGPITFILN--KETCIPYKTSAGLETIGIRMPSDPLAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G P+A PSAN SG+ S T++   +   +  ++  II G  S++GLESTIV+   
Sbjct: 132 ALIKEVGVPIAAPSANLSGKPSPTDINRCI-EDLEGKVDCIIGGSNSEVGLESTIVDCTV 190

Query: 186 EKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           E    +LRPG + IE +++      I   L    D+   P++PGM   HYAP++ V +  
Sbjct: 191 EPPC-VLRPGAITIEMIRKIQPEAYIDPALLNKADQNFKPKAPGMKYKHYAPKASVIIIK 249

Query: 241 IHVNPREALIR--FGNVPIKNIENAIISLNLSKT-------------GKLKEAAFNLFNY 285
             +N     I     N     I+  I++ + +KT               L     NLF  
Sbjct: 250 GEINKTVEKINEIVQNYIDDGIKVGIMATDETKTYYKKGEVISLGSRSDLTSIGRNLFGV 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD G   I   +      G+AI NRL +AA 
Sbjct: 310 LRTFDDLGVEYIISEAFEEKEYGLAIMNRLNKAAG 344


>gi|161507268|ref|YP_001577222.1| Sua5 family translation factor [Lactobacillus helveticus DPC 4571]
 gi|160348257|gb|ABX26931.1| putative translation factor, SUA5 family [Lactobacillus helveticus
           DPC 4571]
          Length = 333

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 161/334 (48%), Gaps = 30/334 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + + +A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPLI  VS
Sbjct: 5   IFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M++++A   P  +  L K FWPGPLTL+L  +    +    T  L T  FR P    
Sbjct: 65  DEKMMERYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI+++
Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRVGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236
             +  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   V    
Sbjct: 183 SVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEPVVVVD 241

Query: 237 ---RLRAIHVNPREALIRFG------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                  I  N +  ++  G      N+P +N        +L K   L +A  NLF  ++
Sbjct: 242 DPADFGKIDFNDKTGVVALGSVLDQINLPEEN------KFDLGKN--LIDADHNLFGALR 293

Query: 288 IADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320
             DD     +I           +A  NRL +AA 
Sbjct: 294 YFDDKDDIETIYVQGFDEGEESLAYMNRLNKAAG 327


>gi|220927715|ref|YP_002504624.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10]
 gi|219998043|gb|ACL74644.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10]
          Length = 359

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 176/339 (51%), Gaps = 33/339 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + NAL+ A E L  G+ +A PTETVYGL  ++ +  A+ ++++ K RP+ NPLI H++D 
Sbjct: 14  NENALKPAAEALKQGMTVAFPTETVYGLGANALDGIAVSKIFKAKGRPSDNPLIVHIADR 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V +  S  P  ++ L    WPGPLTLV+   S   I    TA L T   R+P      
Sbjct: 74  EKVSELTSFIPDKAVALMDKLWPGPLTLVMKKSSV--IPKEITAGLDTVGIRMPEHPVAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI+  G P+A PSAN SG+ S T  +H+L   +  +I +I+D G S++GLEST+++V  
Sbjct: 132 ELIKLAGIPVAAPSANVSGKPSPTAAQHVL-DDLDGKIEMIVDAGSSRVGLESTVLDVSS 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET--------STPQSPGMLKSHYAPRSQVR 237
           +  V +LRPGG+   T  +   +     +D+T        + P+SPGM   HY+P++ V 
Sbjct: 191 DPPV-LLRPGGV---TPCQIEEIIGHIEIDKTIMNKVTADNVPKSPGMKYKHYSPKAHVI 246

Query: 238 L-RAIHVNPREALIRF---------GNVPIKNIENAIISLNLSKTGKLKE------AAFN 281
           +  +  +N +  ++ +           V +   +       L  T  + +       A +
Sbjct: 247 IVESSDINKQAEVMCYLAEKYKKEGKKVGVCATDQTFDKYCLYDTISMGDRNHPETIASS 306

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           LF+  +  D   A  I   ++  +G+G+AI NR+ +AA 
Sbjct: 307 LFSIFREFDGRRADIILAEAVDQNGVGLAIMNRMVKAAG 345


>gi|322699100|gb|EFY90864.1| translation initiation protein Sua5 [Metarhizium acridum CQMa 102]
          Length = 437

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 17/255 (6%)

Query: 12  LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           L  A E+L     P+A PTETVYGL  D+    +++ +Y  K RP+ NPLI HV D+ M+
Sbjct: 43  LEPAAEYLRTKDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLDML 102

Query: 71  KK------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           +         ++      L K FWPGPLT++L     + + P  TA L T   R+P    
Sbjct: 103 RTLLGSRGEDAIPARYQSLMKRFWPGPLTILLPNPDPSPLAPEVTAGLATFGVRMPSSPL 162

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              LI+  G PLA PSAN S + S T  +H+    +   I +I+DGG  ++G+EST+V+ 
Sbjct: 163 ALTLIKLAGVPLAAPSANASTKPSPTMAQHV-KDDLDGRIEMILDGGSCRVGVESTVVDG 221

Query: 184 QCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
            C+    +LRPGG+ I+ L+     E       +   +  + P++PGM   HY+PR++V 
Sbjct: 222 LCDPPA-VLRPGGVAIDELRSCPGWEDVVKAYKDQSEEGKAAPRAPGMKYKHYSPRARVV 280

Query: 238 L-RAIHVNPREALIR 251
           L  + + N R  +++
Sbjct: 281 LYESSYENGRAGIVK 295


>gi|310829674|ref|YP_003962031.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium limosum KIST612]
 gi|308741408|gb|ADO39068.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium limosum KIST612]
          Length = 345

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 167/329 (50%), Gaps = 25/329 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KA E +  G  +  PTETVYGL  ++ + +A+++++E K RPA NPLI H++D   ++
Sbjct: 18  LTKAGELIARGETVVFPTETVYGLGANALDESAVKKIFEAKGRPADNPLIVHIADRDDLE 77

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129
           K  +  P     L   FWPGPLTL++    ++ +  + TA L T   R P       LI+
Sbjct: 78  KLVTEVPEKAEKLMDAFWPGPLTLIMH--KSSGVPEVVTAGLDTVAVRFPSNLIALGLIK 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           + G P+A PSAN SG+ S T  +H++   + + +  II    + +GLEST+V+   E   
Sbjct: 136 SAGVPIAAPSANISGRPSPTKSEHVIEDMMGR-VSAIIVSEDTDVGLESTVVDTTTEPPT 194

Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDETSTPQ---SPGMLKSHYAPRSQV--------- 236
            +LRPGG+ +  L+  I  V++     E   P+   SPGM  +HY+P+  +         
Sbjct: 195 -VLRPGGVTVAELEAVIGRVQVSPNAIENVIPEKAKSPGMKYTHYSPKGDLVIVKGTDAE 253

Query: 237 RLRAI--HVNPREAL---IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           ++  I  H+   E +   I   +  + N  + II ++L      +E + NLF  ++  DD
Sbjct: 254 KVEKINRHIKKHEEMQIGILATDETMGNYHSGII-ISLGSRENPEEMSHNLFARLRTFDD 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   I    I      +A+ NRL +A  
Sbjct: 313 LGIEKIYAEDIEVGNDTLALANRLYKAGG 341


>gi|307265643|ref|ZP_07547196.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326389253|ref|ZP_08210821.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306919287|gb|EFN49508.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325994616|gb|EGD53040.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 354

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 163/329 (49%), Gaps = 28/329 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  +A PTETVYG+  +S N  A+++++  K RP  NPLI H++++  +    
Sbjct: 20  AANVIREGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRPQDNPLIVHIAELKQIYDLV 79

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
              P     L K FWPGPLTL+     +  +  ++TA + T   R+P       LI+   
Sbjct: 80  EDVPQKAKTLMKKFWPGPLTLIFK--KSEKVPYVNTAGMDTVAIRMPSNPIAHLLIKRAE 137

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P++ PSAN SG+ S T+  H++     K + +IIDGG   +G+EST++++  EK   IL
Sbjct: 138 VPISAPSANVSGKPSPTDASHVIEDLYGK-VDVIIDGGKCDVGVESTVLDL-TEKVPVIL 195

Query: 193 RPGGLEIETLKRAI-SVELEYCV----DETSTPQSPGMLKSHYAPRSQVRL--------- 238
           RPG + +E LK  I +VE++  +     E   P+SPGM   HY+P ++V +         
Sbjct: 196 RPGAVTLEMLKEVIGNVEVDPSLLKKPKEDLKPKSPGMKYKHYSPNAEVYIVTGDLEKVV 255

Query: 239 RAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           + I     E L     V I          E   I + +    + +  A NLF  ++  D 
Sbjct: 256 KKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEI-IVVGDRNRPETIAKNLFAVLRQFDK 314

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   I   S     +G+AI NRLE+AA 
Sbjct: 315 KGVDVIFAESFEYDNIGLAIMNRLEKAAG 343


>gi|303390839|ref|XP_003073650.1| translation factor [Encephalitozoon intestinalis ATCC 50506]
 gi|303302797|gb|ADM12290.1| translation factor [Encephalitozoon intestinalis ATCC 50506]
          Length = 332

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 12/214 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           + +PTETVYGLA +  N  A+ R++ +K RPA NPLI  +S + M+++     P+ L   
Sbjct: 22  VVVPTETVYGLAANIWNLRAVERIFALKGRPANNPLIAGISSVQMLEEIVE-GPIPLQYK 80

Query: 85  KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           KL   FWPGPLTL+    S  ++ P+    L T   R+P      K+IE  G PL IPSA
Sbjct: 81  KLIENFWPGPLTLLFK--SKDNVSPIVRGGLNTIAVRMPGSKLLLKIIERLGAPLVIPSA 138

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG+ S T ++H++      E+ L+IDGG S IG+ESTIV    + ++++LRPGG+ +E
Sbjct: 139 NISGRPSPTTIEHVI-EDFGDEVKLMIDGGPSSIGVESTIVQ-YVDGRLQVLRPGGITVE 196

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
            +K  +  E+    +E    +       HY+P+S
Sbjct: 197 RIKDVVDCEVIVKKNEWGGKEKR---HKHYSPKS 227


>gi|227892678|ref|ZP_04010483.1| Sua5 family translation factor [Lactobacillus ultunensis DSM 16047]
 gi|227865549|gb|EEJ72970.1| Sua5 family translation factor [Lactobacillus ultunensis DSM 16047]
          Length = 339

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 162/334 (48%), Gaps = 30/334 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + L +A + L  G  +A PTETVYGL   + N  +++ +Y  K RP+ NPLI  VS
Sbjct: 11  IFKKDQLDEAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPLIVTVS 70

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
              M++++A   P  +  L K FWPGPLTL+L  +    +    T  L T  FR P    
Sbjct: 71  GEKMMERYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 129

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI+++
Sbjct: 130 THDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIIDGGPTRVGLESTIIDL 188

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236
             +  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   V    
Sbjct: 189 SVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEPVIVVD 247

Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287
                  I+ N +  +   G+V        +  ++L K  K      L +A  NLF  ++
Sbjct: 248 DPADFSKINFNEKTGVAALGSV--------LAKIDLPKENKFDLGNNLVDADHNLFGGLR 299

Query: 288 IADDSGASSIAFSSIPNHG-LGIAINNRLERAAA 320
             DD       +    N G   +A  NRL +AA 
Sbjct: 300 YFDDMDNIETIYVQGFNEGEESLAYMNRLNKAAG 333


>gi|56475496|ref|YP_157085.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1]
 gi|56311539|emb|CAI06184.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1]
          Length = 351

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 167/342 (48%), Gaps = 40/342 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N +R+A   L AG  + +PTETVYGLA D+ N  A+ +++  K RPA +PLI H+ D  
Sbjct: 12  DNEIRRAAGLLHAGELVGMPTETVYGLAADALNVAAVGKIFAAKGRPADHPLIVHLPDAG 71

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + + A   P  +  LA+ FWPGPLTL+L    +  +    T    T   RVP       
Sbjct: 72  HLARWAREIPDDAFALARAFWPGPLTLILKRQHS--VPDALTGGQDTVGLRVPDHPVALA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++T+   +A PSANR G+IS T  +H+    +  +I LI+DGG   +G+ESTI+++  +
Sbjct: 130 LLQTFDSGIAAPSANRFGRISPTTAEHV-RQELGDKIALILDGGPCVVGIESTILDLSRD 188

Query: 187 KKVRILRPGGLEIETLKRAISV---------------ELEYCVDETSTPQSPGMLKSHYA 231
              +ILRPG +  E + R I                 +          P+  G L +HYA
Sbjct: 189 TP-QILRPGAISAEDIARVIGCPPRSRPIPTGEASAGDHRDGATGDGEPRVSGSLSAHYA 247

Query: 232 PRSQVRLRAIH-----------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280
           PR+ +++ A                R A++ +G    ++ ++A +   + +   L  A +
Sbjct: 248 PRTPLQMTAASQLAELAATLAAEGSRVAVLAYG---CQDPQDARL---IWRAAPLDAAGY 301

Query: 281 --NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              L+  ++  D  GA  I   + P      A+N+RL RAAA
Sbjct: 302 AHALYANLRDLDACGADFIVVETPPATPDWQAVNDRLRRAAA 343


>gi|302384783|ref|YP_003820605.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum
           WM1]
 gi|302195411|gb|ADL02982.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum
           WM1]
          Length = 353

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 162/338 (47%), Gaps = 30/338 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  L K  + +  G  +A PTETVYGL  ++ N  A  ++Y  K RP+ NPLI H+ D 
Sbjct: 15  EAELLIKPADIIRKGGLVAFPTETVYGLGGNALNEEAAGKIYAAKGRPSDNPLIAHIGDF 74

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             +    S  P     L K FWPGPLTL+      + + P  +T  L T   R+P     
Sbjct: 75  DDLPPLVSAIPEAGKKLMKAFWPGPLTLI---FPKSGLVPYGTTGGLDTVAVRMPVDPVA 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G P+A PSAN SG+ S T   H+    +  +I +I+DGG   IG+ESTI++V 
Sbjct: 132 RALIRLAGVPVAAPSANTSGRPSPTTADHVW-QDMNGKIDMIVDGGAVGIGVESTIIDVS 190

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC-------VDETSTPQSPGMLKSHYAPRSQVR 237
            +  V ILRPG +  E     + +E+          +     P++PGM   HYAP++++ 
Sbjct: 191 GDGPV-ILRPGAITQEMASAVLGIEVPLDPAIVSGPLKADVRPKAPGMKYKHYAPKAELT 249

Query: 238 L---------RAIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGKLKEAAFNL 282
           L           I+    E L +   V I      K   +A +  ++    + +  A NL
Sbjct: 250 LVEGDAEAVIETINRLAEEKLTQGLRVGIICTEETKEAYHAGVVRSMGIRTREETIAHNL 309

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++  DD  A  I   S   + LG AI NRL +AA 
Sbjct: 310 YGVLREFDDLEADVIFSESFSRNHLGQAIMNRLTKAAG 347


>gi|154482619|ref|ZP_02025067.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC
           27560]
 gi|149736519|gb|EDM52405.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC
           27560]
          Length = 359

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 161/340 (47%), Gaps = 31/340 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A E +  G  +A PTETVYGL  D+ N  A  ++Y  K RP+ NPLI H++D+
Sbjct: 18  DMDTINQAGEIIRQGGLVAFPTETVYGLGADALNEEAAAKIYAAKGRPSDNPLIAHIADL 77

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M+K     + P++  L   FWPGP+TL+ +   +  +   +T  L T   R P     +
Sbjct: 78  EMLKPLVEEIPPVAEKLMDAFWPGPMTLIFN--KSNLVPKGTTGGLDTVAVRYPNHPIAQ 135

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G  +A PSAN SG+ S T  +H++   +   I +IIDGG+  +GLESTI++V  
Sbjct: 136 ALIKAAGVSIAAPSANLSGKPSPTLGEHVI-DDMDGRIDMIIDGGMVGMGLESTIIDVTV 194

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL-R 239
              + ILRPG +  E +K  +    E     T       P++PGM   HYAP +   + +
Sbjct: 195 NPPM-ILRPGFITYEMVKEIVPDATEDRTIFTKPTKEFKPKAPGMKYRHYAPSADYTIYK 253

Query: 240 AIHVNPREALIRFGNVPIKN-------------------IENAIISLNLSKTGKLKEAAF 280
              V   E +I   N                        +  +I  ++L    K +  A 
Sbjct: 254 GDEVKVAEKIIELANEKADEGKITGIITADQHLHMYQGRLNKSIKVVSLGDLEKPETVAN 313

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +LF  ++  D      I   +     +G AI NRL +AA 
Sbjct: 314 HLFKALRDFDKVDTEFIFGEAFSEKNVGQAIMNRLTKAAG 353


>gi|229515463|ref|ZP_04404922.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
 gi|229347232|gb|EEO12192.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
          Length = 328

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 171/330 (51%), Gaps = 23/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK-----EAAFNLFNYMKIA--D 290
           LR I V   E L   GN+ I  +   +  L  S+   LK       A+    Y  +A  D
Sbjct: 242 LRVIDVLENE-LATAGNIKIALLH--LSELQASEQRLLKPMPQDAKAYGQALYRSLAEVD 298

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 299 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 328


>gi|164688897|ref|ZP_02212925.1| hypothetical protein CLOBAR_02545 [Clostridium bartlettii DSM
           16795]
 gi|164602101|gb|EDQ95566.1| hypothetical protein CLOBAR_02545 [Clostridium bartlettii DSM
           16795]
          Length = 346

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 28/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++K  E L AG  +  PTETVYGL  ++ +  A+ ++Y+ K RP+ NPLI H+ D 
Sbjct: 14  DMEEIKKQAEILRAGETVIFPTETVYGLGANALDEEAVSKIYKAKGRPSDNPLIVHIGDK 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FT 124
             V     SV   +  +   FWPGP+T++L+     DI P  T+  L T   R+P     
Sbjct: 74  KQVYNLVQSVTKEAEIVMDKFWPGPITIILN---KKDIIPKRTSGGLDTVAIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI+    P+A PSAN SG+ S T  KH+    +   +  II G     GLEST++++ 
Sbjct: 131 NALIKEANIPIAAPSANISGRPSPTRAKHVY-EEMNHRVSGIIMGNDCVYGLESTVLDLT 189

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRA 240
            E    ILRPG +  E L++ + +V+L+  +++       ++PGM  +HY+P ++V + +
Sbjct: 190 GEIPT-ILRPGSITKEQLEKELGNVQLDAALEKKEDNIKAKAPGMKYTHYSPNAEVYIVS 248

Query: 241 IH----VNPREALIRFGNVPIKNIENAIISLNLSKT---GK-------LKEAAFNLFNYM 286
                 ++    LI   N   KN++  +I L  ++    GK       L++ A NLF+ +
Sbjct: 249 GEQTNVIDKINTLIEENND--KNLKTCVICLKCNEKQYIGKTICLGETLEDVASNLFDAL 306

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             AD+     I   S  N G+G AI NRL ++A  +
Sbjct: 307 IQADEEKCDIIYSESFTNEGIGCAIMNRLLKSAGYK 342


>gi|119356333|ref|YP_910977.1| translation factor SUA5 [Chlorobium phaeobacteroides DSM 266]
 gi|119353682|gb|ABL64553.1| translation factor SUA5 [Chlorobium phaeobacteroides DSM 266]
          Length = 323

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/326 (34%), Positives = 173/326 (53%), Gaps = 18/326 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TDS    +A   ++ G  +A PTETVYGL      P A+++L+  K RP  NPL
Sbjct: 1   MQTL-LTDSP--EEAARIINQGNIVAFPTETVYGLGAAICFPEAVKKLFLAKGRPTDNPL 57

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+ +   + K AS + P +  L + F+PGPLTLVL   +T  +    TA L T   R 
Sbjct: 58  IVHIHNAGEMSKVASEISPEATLLIEHFFPGPLTLVLKKKAT--VPDAVTAGLDTVGVRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     +  +     P+A PSAN SG+ S T  + +    +  +IP I+ G  S +GLES
Sbjct: 116 PENQIARAFLRHCCAPVAAPSANLSGKPSSTTWEAVF-HDLNGKIPCILRGEPSIVGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKR---AISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV+   E +  +LR G + +E L+R   A+        DE   P+SPG+   HYAP++ 
Sbjct: 175 TIVDCS-EHEPILLREGAVTLEELQRILPAMKARKTGMKDE--KPKSPGLKYPHYAPKAA 231

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           +RL      P E+ +    + + N    I  +++ ++  ++E A +LF++ +  D  G S
Sbjct: 232 IRLCRRGERPPESTLSSAYIGLSNPPEGIRMVSICQS--IEEYARSLFSFFRACDREGIS 289

Query: 296 SIAFSSIPNH-GLGIAINNRLERAAA 320
            I +  +P   GLG AI++RL RA+ 
Sbjct: 290 VI-YCELPEQKGLGRAIHDRLMRASG 314


>gi|167629001|ref|YP_001679500.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum
           Ice1]
 gi|167591741|gb|ABZ83489.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum
           Ice1]
          Length = 422

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/406 (30%), Positives = 172/406 (42%), Gaps = 99/406 (24%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   L AG  +A PTETVYGL  D+    A+  ++  K RP+ NPLI H++D  
Sbjct: 20  AEGLREAAACLQAGGLVAFPTETVYGLGADALQAEAVAAIFTAKGRPSDNPLIVHIADRD 79

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            V +     P L+  LA+ FWPGPLTLVL   ++  I  + TA L T   R+P     + 
Sbjct: 80  DVARLTVGFPALARRLAERFWPGPLTLVLP--ASPQIPAVVTAGLATVAVRMPSHPVARA 137

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANRSG+ S T   H+    +   I  I+DGG   +GLEST+V+   +
Sbjct: 138 LIGEAGTPVAAPSANRSGRPSPTTAAHVW-EDLGGRIDGIVDGGDCDLGLESTVVDATGD 196

Query: 187 KKVRILRPGGLE---IETL----KRAISVEL----------------------------- 210
             V ILRPGG+    IE L    + A + E                              
Sbjct: 197 VAV-ILRPGGVTREMIEALGLPVRTAFAAERLGEGTGAVAGTDAVAGTDAVAGTDAVAGT 255

Query: 211 -----------EYCVDETSTPQ---------SPGMLKSHYAPRSQVRL------------ 238
                       +C D    P          SPGM   HYAPR+ + L            
Sbjct: 256 DAVAGTNEAAEAFCCDGDVEPGGGAGDFVPPSPGMKYVHYAPRAPLYLLDGGWEGQVEAL 315

Query: 239 ---------RAIHVNPREALI-------------RFGNVPIKNIENAIISLNLSKTGKLK 276
                    R     P   LI             + G+    + E  ++ L  S+   L 
Sbjct: 316 RRLLSPSAERGDDAGPTGLLISEDTYRRIEPMLQQCGDA--GHGEKWVVRLTGSRE-DLA 372

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             A  LF  ++  D +  + I   + P+ G+G A+ NRLE+AA  R
Sbjct: 373 TVARRLFGAIRAFDQTTVARIVAETYPHRGIGSALMNRLEKAAGGR 418


>gi|325967731|ref|YP_004243923.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta moutnovskia
           768-28]
 gi|323706934|gb|ADY00421.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 375

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 174/348 (50%), Gaps = 43/348 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ +++A  ++  G  +A PTETVYGL  D+ N  A  +++  K RP  NPLI H+SDI
Sbjct: 28  DNSIIKEASNYIRNGYLVAFPTETVYGLGADTFNGEACLKIFRAKGRPPDNPLIVHISDI 87

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + + K A  +  +   + +  WPGPLTL+L    + DI    T    T   R P      
Sbjct: 88  NELDKVAIDIPEIIFPVIRKAWPGPLTLILP--KSPDIPKEVTGGRNTVAVRSPAHPVAL 145

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQ 184
            LI++ G P+A PSAN+SG+ S T  +HI+      +I +I +D G +  G+ESTI++V 
Sbjct: 146 ALIKSSGTPIAAPSANKSGRPSPTLAEHIIEDYANDDIEMILLDAGPTFFGVESTIIDVT 205

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYC--VDETSTPQSPGMLKSHYAPRSQVRLR 239
               V +LRPG   IE LK   +V++   E+   + E  T  +PGM   HYAP +  RL 
Sbjct: 206 RNPPV-LLRPGPFTIEELKSLFNVDIVVPEFARGLGEADTALAPGMRYRHYAPHT--RLI 262

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD--------D 291
            +  N  ++LI+  +  + +  N  + + L  T   KE A  L  Y +I +         
Sbjct: 263 IVECNDHDSLIKLLHDTLIDYLNKKLKVALLIT---KETANQLMKYPEINELPIIILGYR 319

Query: 292 SGASSIA---FSSIPN----------------HGLGIAINNRLERAAA 320
               +IA   F S+ N                 G+G+AI NRL +A+ 
Sbjct: 320 ENTYTIAASLFDSLRNLDKINVDIGIAEGIEERGIGLAIMNRLRKASG 367


>gi|260587375|ref|ZP_05853288.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583]
 gi|331083675|ref|ZP_08332786.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542242|gb|EEX22811.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583]
 gi|330403886|gb|EGG83438.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 349

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A E L  G  +A PTETVYGL  D  N  +  ++Y  K RP+ NPLI H++D+
Sbjct: 14  DLQIMKEAGEILKNGGLVAFPTETVYGLGGDGLNARSSEKIYTAKGRPSDNPLIIHIADM 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + K     P     LA+ FWPGPLT++     ++++   +T  L++   R+P      
Sbjct: 74  ESLNKIVRQIPEKAKLLAEKFWPGPLTMIFQ--KSSEVPYETTGGLESVAVRMPNHPVAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G  +A PSAN SG+ S T  +H+ +  +   I +I+DGG   IGLESTIV+   
Sbjct: 132 ALIQAGGGYIAAPSANTSGRPSPTKAEHV-AEDLSGRIDMIVDGGDVGIGLESTIVDF-T 189

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCV---DETSTPQSPGMLKSHYAPRSQVRL--- 238
           E    ILRPG +    ++  I SV ++  +   DE   P++PGM   HYAP++Q+ +   
Sbjct: 190 ENIPVILRPGYINQAMIEAVIGSVRMDKGLLISDEKVKPKAPGMKYRHYAPKAQLVIVQG 249

Query: 239 ----RAIHVNPR-EALIRFGNV-------PIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                  H+N   EAL + G           K++  A +  ++      +  A +LF  +
Sbjct: 250 NTNKVTAHINQICEALQQEGKKVGVIATDETKDLYQANVVKSIGTREDEEGIARHLFGIL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  D+     I   +     +G AI NRL +AA 
Sbjct: 310 REFDEEDVDCIYSEAFDTPKIGQAIMNRLLKAAG 343


>gi|328468717|gb|EGF39699.1| Sua5 family translation factor [Lactobacillus helveticus MTCC 5463]
          Length = 333

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 160/334 (47%), Gaps = 30/334 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + + +A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPLI  VS
Sbjct: 5   IFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M++++A   P  +  L K FWPGPLTL+L  +    +    T  L T  FR P    
Sbjct: 65  DEKMMERYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI+++
Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRVGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV---- 236
             +  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   V    
Sbjct: 183 SVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEPVVVVD 241

Query: 237 ---RLRAIHVNPREALIRFG------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                  I  N +  +   G      N+P +N        +L K   L +A  NLF  ++
Sbjct: 242 DPADFGKIDFNDKTGVAALGSVLDQINLPEEN------KFDLGKN--LIDADHNLFGALR 293

Query: 288 IADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
             DD     +I           +A  NRL +AA 
Sbjct: 294 YFDDKDDIETIYVQGFDEGEESLAYMNRLNKAAG 327


>gi|115443354|ref|XP_001218484.1| protein SUA5 [Aspergillus terreus NIH2624]
 gi|114188353|gb|EAU30053.1| protein SUA5 [Aspergillus terreus NIH2624]
          Length = 434

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 25/242 (10%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK------- 72
           D+ +P+A PTETVYGL  D+   +A++ +Y+ K+RP+ NPLI HV  +SM+++       
Sbjct: 52  DSDIPVAFPTETVYGLGADATRSSAVQGIYKAKQRPSDNPLIIHVDSLSMLERLLNPVQM 111

Query: 73  ---------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
                      S+ P+   L + FWPGPLT++L   S + +    T+NL T   R+P   
Sbjct: 112 SPTRATKTARNSIPPIYHPLIERFWPGPLTILLPNPSGSLLADEVTSNLTTFGVRMPASP 171

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + LI     PLA PSAN S + S T  +H+    +   I LI+DGG   +G+EST+V+
Sbjct: 172 LARLLIHVADRPLAAPSANASTKPSPTTAEHVY-HDLQGRIELILDGGPCGVGVESTVVD 230

Query: 183 VQCEKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
              +    ILRPGG+ IE L+      +V++ Y    +D    P++PGM   HY+P+++V
Sbjct: 231 GLSDPPA-ILRPGGIGIEELRSCAGWENVQVGYHDGTLDVKEVPRAPGMKYRHYSPKARV 289

Query: 237 RL 238
            L
Sbjct: 290 VL 291


>gi|255283090|ref|ZP_05347645.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM
           14469]
 gi|255266392|gb|EET59597.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM
           14469]
          Length = 348

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 173/344 (50%), Gaps = 45/344 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A   L AG  +A PTETVYGL  ++ + TA  ++Y  K RP+ NPLI H++ +
Sbjct: 13  DEAAIAQAGRILQAGGLVAFPTETVYGLGANALDETASGKIYRAKGRPSDNPLIVHIARM 72

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             + + A+V P     LA+ FWPGPLT++       D  P  +T  L+T   R+P     
Sbjct: 73  EDLYRIAAVVPEKAERLAEKFWPGPLTMI---FPKKDCVPYTTTGGLETVAVRMPEHPVA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI+  G  +A PSAN SG+ S T  +H+ +  +  +I +IIDGG   IG+ESTIV++ 
Sbjct: 130 LALIKAGGGFVAAPSANSSGRPSPTRAQHV-AEDMTGKIEMIIDGGSVGIGVESTIVDMS 188

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQ---VR 237
            +  + ILRPG +  E L+  I  V  +  +   D T+ P++PGM   HYAP++    V 
Sbjct: 189 GDVPM-ILRPGYINREMLEETIGEVGTDPAISGEDTTARPKAPGMKYRHYAPKADMLIVE 247

Query: 238 LRAIHVNPR-----EALIRFGNVP----------------IKNIENAIISLNLSKTGKLK 276
                V  R     E  ++ G +P                +++I + +  L++S+     
Sbjct: 248 GEEARVVSRINELVEKELKEGRMPGIIASEETKDRYVGGIVRSIGSRMDELSISR----- 302

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
               +LF  ++  D    S I   +     +G AI NRL +AA 
Sbjct: 303 ----HLFGVLREFDSQNVSRIYSEAFDTPVMGQAIMNRLLKAAG 342


>gi|332796229|ref|YP_004457729.1| Sua5/YciO/YrdC/YwlC family protein [Acidianus hospitalis W1]
 gi|332693964|gb|AEE93431.1| Sua5/YciO/YrdC/YwlC family protein [Acidianus hospitalis W1]
          Length = 351

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 22/327 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +R+A +++  G  +A PTETVYGL  D+ NP A  ++++ K RP  NPLI H++D++ 
Sbjct: 15  DKIREAAKYIKLGGIVAFPTETVYGLGGDAYNPEAAIKVFKAKNRPMDNPLIVHIADLNQ 74

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +   A   P + L +A+  WPGPLT +L    T  +   +T  L T   R+P      +L
Sbjct: 75  LFDVAKDIPDIVLDMAQKVWPGPLTFILK--KTDKVPKETTGGLDTVAVRMPAHPIALQL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN + + S T  +H++ + +  ++ +IIDGG +  G+ESTI+N+    
Sbjct: 133 IRESGVPIAAPSANLATKPSPTKAEHVI-ADLNGKVDVIIDGGDTFFGVESTIINMTVNP 191

Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVD--ETSTPQSPGMLKSHYAPRSQVRL---RA 240
            V +LRPG   +E L + +   V  E  +   E +   +PGM   HYAP  ++ L    +
Sbjct: 192 PV-LLRPGPFTLEELHQFLPEIVIPEQLIKGGEFTVALAPGMKYRHYAPSKKLLLVENYS 250

Query: 241 IHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           I  +  + L     V +       K+ E   I L   +   L E A NLF+  +  D   
Sbjct: 251 IFKDVVKLLRSKYKVAVLCTTEDFKDFEEPRIILGSREN--LYEIAKNLFDSFRKLDRLD 308

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
                   +P  G+G AI NR  +A+ 
Sbjct: 309 VDMGVMEGVPEKGIGFAIMNRARKASG 335


>gi|332800045|ref|YP_004461544.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter sp. Re1]
 gi|332697780|gb|AEE92237.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter sp. Re1]
          Length = 347

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 170/345 (49%), Gaps = 34/345 (9%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI+S+     +   ++KA E +  G  +A PTETVYGL  ++ +    +++Y  K RP  
Sbjct: 5   QIVSVDKNRPEGYKIKKAAEIIKTGGLVAFPTETVYGLGGNALDEHVAKKIYAAKGRPQD 64

Query: 58  NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTA 115
           NPLI H+  +S + +     P  +  L   FWPGPLT++       DI P S T  L T 
Sbjct: 65  NPLIVHIHSLSQLDELVKEIPTRAAVLMDKFWPGPLTII---FHKKDIIPYSTTGGLDTV 121

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      +LI+  G P+A PSAN SG+ S    + + +  +  +I +I+DGG + +
Sbjct: 122 AIRMPAHSVALELIKESGVPIAAPSANISGRPSPACAEDV-AEDLFGKIEMILDGGPTSV 180

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPR 233
           G+EST++++  EK   ILRPGG+  E L+  +  V L+  +     P+SPG    HYAP+
Sbjct: 181 GVESTVLDL-SEKVPIILRPGGVTKEDLEDVLGCVNLDPGLAPGEKPRSPGQKYRHYAPK 239

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE---------------- 277
           +Q+    +     E  ++      K +E+  + + +  T + +                 
Sbjct: 240 AQM---TVIEGCMENQVKTIQELTKQLESGGLKVGIMATAQTRHLYTRGYVISVGDRTAP 296

Query: 278 --AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              + NLF  ++  D  G   I    I   G+G+A+ NRL +AA 
Sbjct: 297 LTISSNLFTILRKFDRLGVDRIFAEGISKDGIGLAVMNRLYKAAG 341


>gi|225874536|ref|YP_002755995.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225791509|gb|ACO31599.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 343

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 179/335 (53%), Gaps = 32/335 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ +A E L AG  +A PTETVYGL  ++ +  A+  ++E K+RPA +PLI HVS + M+
Sbjct: 11  SIARAAEILRAGGTVAFPTETVYGLGANALDAAAVAGIFEAKQRPAWDPLIVHVSSLEML 70

Query: 71  KKHASVDPL---SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + A  D L   +  LA++FWPGPLT++L    + ++    TA       R+P     + 
Sbjct: 71  SQVA--DELCDNAKRLAEVFWPGPLTMLLP--RSANVPDAVTAGRPLVGVRMPSHPIAQA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE  G P+A PSAN  G+IS T  +H+ +  +   I  I+DGG +  GLEST++  + +
Sbjct: 127 LIEAAGVPVAAPSANSFGRISPTTAQHV-AEDLEGRIDAILDGGETIHGLESTVIEPRAD 185

Query: 187 KKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQ---SPGMLKSHYAPRSQVRL--- 238
             + I RPG +  + L+   +  +EY     E S P+   SPG+   HYAPR++++L   
Sbjct: 186 HSI-IYRPGVVTAQQLRAVCAGSVEYYEPAHEKSAPESLPSPGVGLRHYAPRARLQLVEG 244

Query: 239 --RAIHVNPREALI-------RFGNVPIKNIENAII--SLNLSKTGKL---KEAAFNLFN 284
              A     RE ++       R G +  ++ + A+I  + ++ + G+    +E A  LF 
Sbjct: 245 AGEAQMTALRETVLDAERIGERVGVMLPESFQTALIGCAAHVYRWGRWEDKEELAQRLFA 304

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++  D  G + I        G+G AI +RL +AA
Sbjct: 305 GLRQLDAEGLTLIVCPLPEAKGIGRAICDRLGKAA 339


>gi|291520269|emb|CBK75490.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio fibrisolvens 16/4]
          Length = 353

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 172/338 (50%), Gaps = 33/338 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E L  G  +A PTETVYGL  D+ +  A R++Y+ K RP+ NPLI H++    ++
Sbjct: 18  IREASEILKNGGLVAFPTETVYGLGGDATDKEASRKIYQAKGRPSDNPLIVHIAKFEQLE 77

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLI 128
           +  +  P  +  LA  FWPGPLT+V +     ++ P  +T  L T   R+P       LI
Sbjct: 78  QITTDLPETAKKLADAFWPGPLTMVCN---KNEVIPYETTGGLDTVAVRMPNNPVALALI 134

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  +A PSAN SG+ S T   H+    +  +I  I+DGG   IGLESTIV++  E  
Sbjct: 135 EESGCMIAAPSANTSGRPSPTKASHVY-EDLSGKIEAILDGGPVDIGLESTIVDL-TEDI 192

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV---DETST----PQSPGMLKSHYAPRSQVRLRA 240
           V ILRPG + ++ LK  +  V ++  +   D+ +T    P++PGM   HYAP+  + + +
Sbjct: 193 VTILRPGYINMDMLKEVVGEVRMDPGIVYNDKGTTSGAKPKAPGMRYKHYAPKGDLTIVS 252

Query: 241 IHVNPREALIR--FGNVPIKNIENAIISLNLSKTGKLKEA--------------AFNLFN 284
              N   + I     +   +  +  II+ + +  G+ ++               A NL++
Sbjct: 253 GEENKVVSTINKLTADKRAEGKKVGIIATS-ATAGRYEQGEVLIIGDREDEQSIAHNLYD 311

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            ++  D+     I   S     +G AI NRL +AA  +
Sbjct: 312 ILRQFDELDVDIIYSESFATPKIGQAIMNRLLKAAGQK 349


>gi|153802309|ref|ZP_01956895.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122134|gb|EAY40877.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 328

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 172/330 (52%), Gaps = 23/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATAIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I     E L   GN+ I  +   +  L  S+   LK    EA A+    Y  +A  D
Sbjct: 242 LRVIDALENE-LATAGNIKIALLH--LSELQASEQRLLKPMPQEAKAYGQALYRSLAEVD 298

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 299 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 328


>gi|227827742|ref|YP_002829522.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.14.25]
 gi|229579263|ref|YP_002837661.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581976|ref|YP_002840375.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|229585013|ref|YP_002843515.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.27]
 gi|238619914|ref|YP_002914740.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.4]
 gi|284997945|ref|YP_003419712.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.D.8.5]
 gi|227459538|gb|ACP38224.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.14.25]
 gi|228009977|gb|ACP45739.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012692|gb|ACP48453.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228020063|gb|ACP55470.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.27]
 gi|238380984|gb|ACR42072.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.4]
 gi|284445840|gb|ADB87342.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.D.8.5]
 gi|323474810|gb|ADX85416.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus REY15A]
 gi|323477515|gb|ADX82753.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus HVE10/4]
          Length = 358

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 159/329 (48%), Gaps = 22/329 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KA   + AG  +  PTETVYGL  ++ +  A+++++  K RP  NPLI H+S+I  
Sbjct: 15  DKIKKAASVIKAGGTVVFPTETVYGLGANALDAEAVKKIFIAKNRPMDNPLIVHISNIDQ 74

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A   P   +++ K+ WPGPLT VL    T  +   +T  L T   R+P       L
Sbjct: 75  LYEVAKDIPEKIINIVKIVWPGPLTFVLK--KTDKVPKETTGGLDTIAVRMPAHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I     P+A PSAN + + S T  +H++     K + +++D G +  G+EST++NV  + 
Sbjct: 133 INESDVPIAAPSANLATKPSPTKAEHVIDDLFGK-VDVVLDSGETFFGVESTVINVTVDP 191

Query: 188 KVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR------ 237
            V +LRPG   +E L+R     I  E      E S   +PGM   HYAP  +        
Sbjct: 192 PV-LLRPGPFSVEELERIFGKIIIPEQAKGTGEFSVALAPGMKYKHYAPTKKFLVVENRG 250

Query: 238 -LRAIHVNPREALIRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
            LR +    RE   R   +    +     E  I  + L     L E + NLF+  +  D 
Sbjct: 251 ILRDVIKELREKGYRVVFLCAHEVCKQFQEEKIEIIELGSENNLYEISRNLFDSFRKLDK 310

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S A      S+   G+G+AI NR  +A+ 
Sbjct: 311 SNADIGIIHSVSERGIGLAIMNRTRKASG 339


>gi|294658611|ref|XP_002770816.1| DEHA2F13486p [Debaryomyces hansenii CBS767]
 gi|202953256|emb|CAR66340.1| DEHA2F13486p [Debaryomyces hansenii]
          Length = 402

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 161/326 (49%), Gaps = 35/326 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK-----KHASVDPL 79
           +  PTETVYGL   + N  +++ +Y+ K RPA NPLI HVS I  +K     K   +  +
Sbjct: 74  VGFPTETVYGLGGSALNDESVKSIYKAKNRPADNPLIVHVSSIDQLKRKILPKDYKIPEI 133

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
             +L + FWPGPLT++L +   + I  + TAN  T   R+P     + LI     PLA P
Sbjct: 134 YDNLIEKFWPGPLTILLPIHEGSPISKIVTANQSTFAVRIPQHPIARALIALSDLPLAAP 193

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN S + S T   H+    +  +IP IIDGG   +G+EST+V+   +  + +LRPGG+ 
Sbjct: 194 SANASTRPSPTLASHVYHD-LQGKIPYIIDGGACDVGVESTVVDGLVDPPM-LLRPGGVS 251

Query: 199 IETLKRAISVELEYCV------DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           +E +++      E  V       ++   ++PGM   HY+P ++V L     +   A+ ++
Sbjct: 252 VEDVRKTGGGSWENVVLAKKTAGKSEAVKTPGMKYKHYSPTAKVVLFINCGDGIAAISKY 311

Query: 253 ---GNVP---------------IKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
               N+P                + I   I I  +L  TG   E + NLF  ++  D+ G
Sbjct: 312 ISENNIPESKTIALLKSRYFTDARAISRQINIEEDLGATGP--EISRNLFKLLRQVDEQG 369

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
              I    I     G+A+ NRL +AA
Sbjct: 370 VDIIFIEGIDETDEGLAVMNRLSKAA 395


>gi|171186194|ref|YP_001795113.1| Sua5/YciO/YrdC/YwlC family protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935406|gb|ACB40667.1| Sua5/YciO/YrdC/YwlC family protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 345

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 159/329 (48%), Gaps = 21/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++ A E L  G  +A PTETVYGL  D+R+     R+++ K RP  NPLI HV  +
Sbjct: 12  DPQVVKTAAEVLRRGGIVAAPTETVYGLFADARSDAGCARVFKAKGRPPDNPLIVHVDSV 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            M  + A V      + K  WPGPLTLVL   S   +    TA L+T   R P       
Sbjct: 72  EMATEVAEVPAELYEVLKRVWPGPLTLVLK--SKGVVSRCVTAGLETVAVRAPAHPVPLA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I   G P+A PSAN++G+ S T  +H++   +  E+ +++DGG +  G+ESTI++V  +
Sbjct: 130 IIRELGAPIAGPSANKAGRPSPTAAEHVV-EDLGGEVDVVVDGGPTFFGVESTIIDV-TK 187

Query: 187 KKVRILRPGGLEIETLKRAIS-VE---LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           +   +LRPG   +E L+R    +E   +   + E     +PGM   HYAP +   L  +H
Sbjct: 188 RPPLLLRPGPFTVEELERFFGPIEVPPVARGLSEADVAVAPGMKYRHYAPDTP--LVVVH 245

Query: 243 VNPREALIRFGNVPIK--------NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
            +   A     +  ++            A   L L     + E A NL+  ++  D    
Sbjct: 246 FDLSAAAAALRSRGLRVAVLCAVGKCAEADAVLRLGD--DIYEVAKNLYGALRELDRLSV 303

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRN 323
                 ++   G+G+A+ NRL +AA  R 
Sbjct: 304 DVGLVPAVEERGIGLAVMNRLRKAAGHRE 332


>gi|88859366|ref|ZP_01134006.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2]
 gi|88818383|gb|EAR28198.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2]
          Length = 324

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 167/333 (50%), Gaps = 33/333 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++S      + KA + ++ G  +A+PTETVYGLA D+RN  A+ +++  K RP  +PLI 
Sbjct: 5   VLSAQQQADIAKAAQLIEQGELVAVPTETVYGLAADARNAQAVAKIFAAKGRPTNHPLIV 64

Query: 63  HVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H++D + +   A   P  +L LA  FWPGPLTL+L+      +  + T  L T   RVP 
Sbjct: 65  HLADHTKMADWAKTVPETALKLAAAFWPGPLTLLLN--KAEGVSDVVTGGLTTVGLRVPA 122

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L++ Y   +A PSAN   ++S T  +H+L + +  ++  ++DGG  + GLESTI
Sbjct: 123 HPALLSLLQQYDLAVAAPSANPYKKLSPTCAEHVL-TGLNGKLAAVLDGGACEHGLESTI 181

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS-----PGMLKSHYAPRSQ 235
           V++  +  V+ILR G +    L   +           + PQ      PG +K+HY P + 
Sbjct: 182 VDLTGD-TVQILRAGPITANELSAVLG-------QPVTQPQQHNKAVPGNVKAHYQPNTL 233

Query: 236 VRL-------RAIH-VNPREALIRFGNVPIK-NIENAIISLNLSKTGKLKEAAFNLFNYM 286
           +R+        A+  V  + AL+ F     K N+    +  +    G++      LF  +
Sbjct: 234 LRVMNKTQLNEALQSVTAQIALLSFETKSDKPNVHFVAMPTDAKDYGQV------LFREL 287

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             AD  G + I   S P     +A ++RL+RAA
Sbjct: 288 GKADTLGLAEIWLESPPQGQQWLAAHDRLKRAA 320


>gi|67539818|ref|XP_663683.1| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4]
 gi|40738864|gb|EAA58054.1| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4]
          Length = 1588

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 24/238 (10%)

Query: 23   LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---------- 72
            +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H+  + M+ +          
Sbjct: 1217 VPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLQMLNRLLNPASDTSC 1276

Query: 73   -----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                  +++ P+   L + FWPGPLT++L   S + + P  T+NL T   R+P     + 
Sbjct: 1277 PTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPEVTSNLTTFGVRMPLSPLARL 1336

Query: 127  LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            LI     PLA PSAN S + S T  +H+    +   I LI+DGG   +G+EST+V+    
Sbjct: 1337 LIHVADRPLAAPSANASTKPSPTAAEHVF-HDLQGRIELILDGGPCGVGVESTVVD-GLS 1394

Query: 187  KKVRILRPGGLEIETLKRA---ISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238
                ILRPGG+ IE L+      +V+L Y     D    P++PGM   HY+P+++V L
Sbjct: 1395 NPPSILRPGGVSIEELRTCPGWENVQLAYHDGTYDVKEIPRAPGMKYRHYSPKARVVL 1452


>gi|259479736|tpe|CBF70230.1| TPA: translation initiation protein Sua5 (AFU_orthologue;
           AFUA_2G09160) [Aspergillus nidulans FGSC A4]
          Length = 427

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 130/238 (54%), Gaps = 24/238 (10%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---------- 72
           +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H+  + M+ +          
Sbjct: 56  VPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLQMLNRLLNPASDTSC 115

Query: 73  -----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                 +++ P+   L + FWPGPLT++L   S + + P  T+NL T   R+P     + 
Sbjct: 116 PTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPEVTSNLTTFGVRMPLSPLARL 175

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI     PLA PSAN S + S T  +H+    +   I LI+DGG   +G+EST+V+    
Sbjct: 176 LIHVADRPLAAPSANASTKPSPTAAEHVF-HDLQGRIELILDGGPCGVGVESTVVD-GLS 233

Query: 187 KKVRILRPGGLEIETLKRA---ISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238
               ILRPGG+ IE L+      +V+L Y     D    P++PGM   HY+P+++V L
Sbjct: 234 NPPSILRPGGVSIEELRTCPGWENVQLAYHDGTYDVKEIPRAPGMKYRHYSPKARVVL 291


>gi|156744105|ref|YP_001434234.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus castenholzii DSM
           13941]
 gi|156235433|gb|ABU60216.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus castenholzii DSM
           13941]
          Length = 355

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 170/346 (49%), Gaps = 38/346 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S  D   + +A   +++G  +A PTETVYGL  ++ +  A+ R++  K RPA +P+I H+
Sbjct: 15  SAPDPRIIAEAAAVIESGGLVAFPTETVYGLGANALDERAVTRIFRAKGRPATDPIIAHI 74

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK----TACFRV 119
           +D+  +   A  + P++  LA+ FWPGPLTLV+         P+  ANL     T   R+
Sbjct: 75  ADLRQLDMLARDIPPVARVLAQRFWPGPLTLVVWR------RPIVPANLSAGRATVAVRM 128

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       LI   G P+A PSANR  + S T   H+L   +   I L++DGG + +G+ES
Sbjct: 129 PAHPVALALIAAAGVPIAAPSANRFSRPSPTTAVHVL-DDLAGCIDLVLDGGPTLVGIES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY-CVDETSTPQSPGMLKSHYAP-- 232
           ++V++  +   R+LRPGG+ +  L+  +    VE  Y  V + + P +PGML  HYAP  
Sbjct: 188 SVVDLTTDPP-RLLRPGGVTVAALRELLPELIVEPRYLSVGDEAAP-APGMLLRHYAPDA 245

Query: 233 ----------------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK 276
                           RS+V L A+    +  ++ F     +  +  +  + L       
Sbjct: 246 PLIVVAGEREAALARIRSEV-LMALDAGKQVGMLAFDEDVAELADLPVRIVALGSAANPG 304

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           + A  LF  ++  +  G   I        GL +A+ +RL RAA  R
Sbjct: 305 QVAQRLFAALREIERIGVDLILVRDPGREGLRLAVRDRLVRAAEGR 350


>gi|167768294|ref|ZP_02440347.1| hypothetical protein CLOSS21_02850 [Clostridium sp. SS2/1]
 gi|317497775|ref|ZP_07956088.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167709818|gb|EDS20397.1| hypothetical protein CLOSS21_02850 [Clostridium sp. SS2/1]
 gi|291560271|emb|CBL39071.1| translation factor SUA5 [butyrate-producing bacterium SSC/2]
 gi|316894964|gb|EFV17133.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 350

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 166/331 (50%), Gaps = 26/331 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E + AG  +A PTETVYGL  +   P A +++Y  K RP+ NPLI HV D+ MV+
Sbjct: 18  MEEAGELIKAGELVAFPTETVYGLGGNGLLPDAAKKIYAAKGRPSDNPLILHVCDMQMVE 77

Query: 72  KHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P +   A + FWPGP+T++L       +    T  L T   R+P      +LI 
Sbjct: 78  SLVKEIPDNARRAMEHFWPGPMTVILQ--KADQVPDCVTGGLDTVAIRMPDHPVALELIR 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T  +H++   +  +IP+I+DGG   +G+ESTI++   E   
Sbjct: 136 RSGVPIAAPSANTSGRPSPTKAEHVM-EDLHGKIPMILDGGAVMVGVESTIIDF-TEIVP 193

Query: 190 RILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238
            ILRPG +  E+++  +  E+         +   P++PGM   HYAP++++ L       
Sbjct: 194 VILRPGWITKESMEEFLGCEVLMNTSLKASDHGIPRAPGMKYKHYAPKAEMVLVLGDDQE 253

Query: 239 RAI-HVN-----PREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
           + + H+N      +E   + G +     K++  A   +++ +   L+    +L++ ++  
Sbjct: 254 KVVNHINQLAKEQKEQGKKIGIIASDETKDLYQADEVVSVGQRAHLETVTAHLYDVLREF 313

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D      I         L  AI NR+ +AA 
Sbjct: 314 DHKDVDMIYSEGFEGEPLSEAIMNRMVKAAG 344


>gi|323466865|gb|ADX70552.1| Sua5 family translation factor [Lactobacillus helveticus H10]
          Length = 339

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 164/341 (48%), Gaps = 32/341 (9%)

Query: 1   MQIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           ++IM   I   + + +A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ N
Sbjct: 4   IKIMETKIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDN 63

Query: 59  PLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI  VSD  M++++A   P  +  L K FWPGPLTL+L  +    +    T  L T  F
Sbjct: 64  PLIVTVSDEKMMERYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAF 122

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GL
Sbjct: 123 RCPDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGL 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233
           ESTI+++  +  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP 
Sbjct: 182 ESTIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPS 240

Query: 234 SQV-------RLRAIHVNPREALIRFG------NVPIKNIENAIISLNLSKTGKLKEAAF 280
             V           I  N +  +   G      N+P +N        +L K   L +A  
Sbjct: 241 EPVVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEEN------KFDLGKN--LIDADH 292

Query: 281 NLFNYMKIADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           NLF  ++  DD     +I           +A  NRL +AA 
Sbjct: 293 NLFGALRYFDDKDDIETIYVQGFDEGEESLAYMNRLNKAAG 333


>gi|299529402|ref|ZP_07042840.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44]
 gi|298722651|gb|EFI63570.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44]
          Length = 332

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 174/342 (50%), Gaps = 37/342 (10%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T   +++ A   L  G  + +PTETVYGLA DS N  A+ +++  K RPA +PLI 
Sbjct: 2   ILDGTLEASVQAAAVALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + + ++A   P  +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADAAAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119

Query: 122 GFTKKLI---------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 +           +G  ++ PSAN+ G++S T  +H+ +S   +E+ L++DGG  
Sbjct: 120 HPVAHAVLQACQQLDPPVWG--VSAPSANKFGRVSPTTAEHV-ASEFGEEL-LVLDGGAC 175

Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLK 227
           ++G+ESTIV+  C + V + LRPG +  + + RA  +    + E   D   TP++ G L 
Sbjct: 176 EVGIESTIVD--CTRGVPVLLRPGAITRDDIARACGLRPLSKEELTAD---TPRASGTLL 230

Query: 228 SHYAPRSQVRLRAIHVNPREALIRFG----NVPIK-----NIENAIISLNLSKTGKLKEA 278
           +HYAP ++VRL       + AL   G    N+ I      N+  A + L    + + ++ 
Sbjct: 231 AHYAPNAKVRLMDAG-QLQSALGILGKDGRNIAIYHRSPLNVTTAQLLLR-RMSDEPRDV 288

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           A  LF  ++  DD GA  I   + P+      + +RL+RAAA
Sbjct: 289 ARELFGMLRNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330


>gi|260951309|ref|XP_002619951.1| hypothetical protein CLUG_01110 [Clavispora lusitaniae ATCC 42720]
 gi|238847523|gb|EEQ36987.1| hypothetical protein CLUG_01110 [Clavispora lusitaniae ATCC 42720]
          Length = 388

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 165/345 (47%), Gaps = 33/345 (9%)

Query: 6   ITDSNALRK----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           I+D+  L      A     +G  +A PTETVYGL   + +  ++R +Y  K RPA NPLI
Sbjct: 37  ISDAETLENLRLAASHVRQSGSIVAFPTETVYGLGGSALDDDSVRAIYTAKNRPADNPLI 96

Query: 62  CHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            HV+ +  +++        +  +   L   FWPGPLT++L +   + +  L TA   T  
Sbjct: 97  VHVASVDQIQRLILPSSRQIPAVYEKLIAKFWPGPLTILLPIEKGSPVSQLVTAGQNTVG 156

Query: 117 FRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI     PLA PSAN S + S T  +H+L   +   IP I+DGG   +G
Sbjct: 157 VRMPSDSVARALIALSDTPLAAPSANASTRPSPTLAEHVL-YDLDTRIPYILDGGPCTVG 215

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV------DETSTPQSPGMLKSH 229
           +EST+V+      + +LRPGG+  E ++ +        +       +T   ++PGM   H
Sbjct: 216 VESTVVDGLVSPPM-LLRPGGVSPEQIRESGGYGWNEVILAKKTAGKTEPVRTPGMKYRH 274

Query: 230 YAP-------------RSQVRLRAIHVNPREALIRFGN-VPIKNIENAIISLNLSKTGKL 275
           Y+P             R+ VR      + R AL+R    VP   +  ++ S     T   
Sbjct: 275 YSPTARVILFVGCGDGRTAVRKYVDQHSGRVALLRSKQFVPASEMGISVSSDKEMGT-SA 333

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            E A NLF  ++  D+SG   I   ++   G G+A+ NRL +AA+
Sbjct: 334 AEVARNLFRLLREVDESGVDMILVEAVDEVGDGLAVMNRLSKAAS 378


>gi|257066248|ref|YP_003152504.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii DSM
           20548]
 gi|256798128|gb|ACV28783.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii DSM
           20548]
          Length = 344

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 170/332 (51%), Gaps = 26/332 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +++A   L  G  +AIPTETVYGL  +  +  A   +++ K RPA NPLI H+S+ 
Sbjct: 14  DEDIIKRAAVLLRRGELVAIPTETVYGLGANGLDEKACLNIFKTKNRPADNPLILHISNK 73

Query: 68  SMVKKHASVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-F 123
            M+  +  V+ +S    KL   WPGPLT++      ++I P + TA   T   R P    
Sbjct: 74  EML--YNLVEDVSDDAKKLMTLWPGPLTMI---FKKSEIIPEVVTAGGDTVAVRFPVDEI 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +++IE    P+A PSAN SG+ S TN        +  +IPLIIDGG   IG+EST++++
Sbjct: 129 ARRIIEEANIPIAAPSANISGRPSPTNASDCY-YDLNGKIPLIIDGGDCNIGIESTVIDM 187

Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA- 240
             E    ILRPG   +E ++  + +V L+   VD+   P+SPG    HYAP++++++   
Sbjct: 188 -SEDTPTILRPGFYTLEYIREILPNVALDDALVDDNKIPKSPGQKYKHYAPKARMQVYVG 246

Query: 241 ------IHVNPREALIRFGNVPIKNIEN------AIISLNLSKTGKLKEAAFNLFNYMKI 288
                 I+   RE   +   V +   E+          ++      L + +  LF  ++ 
Sbjct: 247 DMASDFIYKKAREYQNKGIKVGVLVFEDNMKRFEGFERISFGDRSDLSQMSHVLFTALRK 306

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D      I    + ++ LG +I NR++++AA
Sbjct: 307 MDKLKVDLILAEGVMDNNLGKSIMNRMKKSAA 338


>gi|119776125|ref|YP_928865.1| SUA5/YciO/YrdC family translation initiation protein [Shewanella
           amazonensis SB2B]
 gi|119768625|gb|ABM01196.1| translation factor SUA5 [Shewanella amazonensis SB2B]
          Length = 315

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 166/329 (50%), Gaps = 23/329 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  ITD  +L  A   L+ G  +A+PTETVYGLA D+ N  A+ +++ +K RPA NPLI 
Sbjct: 1   MAQITDQISL--AVAALNRGELVAMPTETVYGLAADAGNADAVAKVFALKGRPATNPLIV 58

Query: 63  HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D S +   AS V   +  L   FWPGPLTLVL   + T +    TA   T   R+P 
Sbjct: 59  HVADASWINDWASDVGQDAEALMAAFWPGPLTLVLP--AKTYVSRAVTAGQNTVALRMPA 116

Query: 122 GFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L++ +G  L  PSAN+   IS T+  H+       E+ LI++GG  ++GLESTI
Sbjct: 117 HPQALALLKDFGRALVAPSANKYMSISPTSSDHVARQFAGDEL-LILEGGNCRVGLESTI 175

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP-----RSQ 235
           V +    + R+LRPG + + +++  +   +     ++    +PG    HY+P     R  
Sbjct: 176 VALLPGDEPRLLRPGMVSVASIEAVLGRPV---AQQSGGVVAPGQHHKHYSPGLPCYRYG 232

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEA-AFNLFNYMKIADDSG 293
                 H      L++  ++      NA+ ++    + G   +A A  L++ +   D   
Sbjct: 233 AESDVSH------LLQANDIGWIFCGNAVPVAGKAIELGADPDAYAQGLYDALYQLDHET 286

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            S+I  +  P+     A+ NRLERAA PR
Sbjct: 287 LSAIYIAEPPHSSEWQAVQNRLERAAKPR 315


>gi|85014437|ref|XP_955714.1| translation factor [Encephalitozoon cuniculi GB-M1]
 gi|19171408|emb|CAD27133.1| similarity to PROTEIN REQUIRED FOR NORMAL GROWTH
           (SUA5/YRDC/YC10/YWLC FAMILY) [Encephalitozoon cuniculi
           GB-M1]
          Length = 337

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 177/343 (51%), Gaps = 36/343 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I+S  + +A      F D    +A+PTETVYGLA    NP A+ RL ++K+RPA NPL
Sbjct: 1   MKIVSTKELDADFVVRFFDDV---VAVPTETVYGLAASIYNPRAVERLLKLKRRPADNPL 57

Query: 61  ICHVSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACF 117
              VS   M+K+     +      L  +FWPGPLTL   L  + D +  +  + L++   
Sbjct: 58  PVAVSSYRMLKEIVKEPIPEEYRRLMDMFWPGPLTL---LFRSKDCVSSVIRSGLESVAV 114

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      ++IE  G P+ +PSAN SG+ S T   H++      E+ LIIDGG   IGL
Sbjct: 115 RMPKSKHLLEIIERLGAPVVLPSANISGRPSPTTAGHVV-EDFGDEVKLIIDGGPCPIGL 173

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234
           EST+V+   +  ++ILRPGG+ +E ++   +  V +    ++  T  SPG    HY+PRS
Sbjct: 174 ESTVVS-YADGGLQILRPGGITVEDIESVANCKVFVRNRANDEETELSPGQKYKHYSPRS 232

Query: 235 QVRLRAIHVNPRE---ALIRF--GNVPIKNIENAI---ISLNLSKTGKL---------KE 277
            + L      P E    ++ +   N  +  I  A+   I L +   G++         +E
Sbjct: 233 PLIL--FKGQPEEVKSGILEYIRANPDVSRIGVALHSGIDLGVPVDGRISVFNMGSDRRE 290

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHG-LGIAINNRLERAA 319
              NLF  ++  D    SS+  ++  ++G  G AI NRLE+AA
Sbjct: 291 VCRNLFEGLRSLDK--ISSVILAAGVDYGEEGDAIMNRLEKAA 331


>gi|121698888|ref|XP_001267839.1| translation initiation protein Sua5 [Aspergillus clavatus NRRL 1]
 gi|119395981|gb|EAW06413.1| translation initiation protein Sua5 [Aspergillus clavatus NRRL 1]
          Length = 433

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/256 (35%), Positives = 143/256 (55%), Gaps = 28/256 (10%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +++A+ +A + L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HV  
Sbjct: 38  EASAIEEAAQLLQTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVDS 97

Query: 67  ISMVKKHASVDPLS----------------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           + M+++  +  P+S                  L + FWPGPLT++L   S + +    TA
Sbjct: 98  LEMLERLLNPAPMSPTRAMKTARHSIPAIYRPLIERFWPGPLTILLPNPSGSLLADEVTA 157

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           NL T   RVP     + LI     PLA PSAN S + S T  +H+    +   I LI+DG
Sbjct: 158 NLTTFGVRVPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLQGRIELILDG 216

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI----SVELEY---CVDETSTPQS 222
           G+  +G+EST+V+        +LRPGG+ IE + RA+    +V++ Y    +D    P++
Sbjct: 217 GLCGVGVESTVVD-GLSNPPAVLRPGGVGIEEI-RAVPGWENVQVAYQDGTLDVKEIPRA 274

Query: 223 PGMLKSHYAPRSQVRL 238
           PGM   HY+P+++V L
Sbjct: 275 PGMKYRHYSPKARVVL 290


>gi|261334880|emb|CBH17874.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 379

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 181/372 (48%), Gaps = 58/372 (15%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I D + L  A   L  G  +A+PTETVYGL  ++ +  A+++++E+K RP+ +PLICHV 
Sbjct: 4   IIDVSELDYAAHSLTRGGLVALPTETVYGLGGNALDERAVQQIFEVKGRPSTDPLICHVP 63

Query: 66  DI--SMVKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           DI  ++    ++ DP +L +AK      WPGPLT+V    + + + P  T N      R+
Sbjct: 64  DIQRAVGLWDSNADPAALEVAKWIGDAIWPGPLTIVFR--ANSVLPPSVTGNSGYVGVRI 121

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIGL 176
           P      +L++    P+A PSAN  G +S T  +H+L   + +  P  L+IDGG S IG+
Sbjct: 122 PNHPIALQLLQLVNFPVAAPSANTFGHVSPTTAEHVL-RDLGERCPSLLVIDGGHSNIGI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTP-------QSPGML 226
           EST++ V    KV ILR G + +  L++ I  + E  +   D  S P         PG L
Sbjct: 181 ESTVLKVASATKVEILRRGKVSLADLQQVIWKKFECHITVRDTRSCPGTVDMAMDGPGQL 240

Query: 227 KSHYAPRSQVRLRA-------IHVNP---------------------REALIRFGNVPIK 258
            +HY+P     +         +H N                      +  +I FG +  +
Sbjct: 241 LTHYSPSVLSGMLTPKSTNCEVHQNELDKAVVELPSTPPLTGGVPLNQTVIIDFGGLLQR 300

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGIA 310
                +   +LS  G++++A F +F  ++ ++  SGA  + F   S  P    +  L  A
Sbjct: 301 FQRVCLAYRDLSAEGEVQQACFAVFEALRWSETVSGAGVVLFPLISEWPCKTGDEELLAA 360

Query: 311 INNRLERAAAPR 322
           + +RL RAA+ +
Sbjct: 361 VEDRLFRAASGK 372


>gi|115372429|ref|ZP_01459738.1| Sua5/YciO/YrdC/YwlC [Stigmatella aurantiaca DW4/3-1]
 gi|115370642|gb|EAU69568.1| Sua5/YciO/YrdC/YwlC [Stigmatella aurantiaca DW4/3-1]
          Length = 297

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 153/303 (50%), Gaps = 16/303 (5%)

Query: 32  VYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPG 90
           +YGLA ++ +  A+RR++ IK RPA +PLI H+     + + A  + P +  LA  FWPG
Sbjct: 1   MYGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARDIPPEAWKLAAAFWPG 60

Query: 91  PLTLVLDLLS-TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISI 148
           PLTLVL   S  TD     T    T   RVP       ++   G  LA PSANR G++S 
Sbjct: 61  PLTLVLRRTSRATDA---VTGGQDTVALRVPNHPLALAVLSALGGGLAAPSANRFGRVSP 117

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208
           T   H+    +  ++ LI+DGG   +G+ESTIV++       ILRPGGL  E L+  +  
Sbjct: 118 TTAGHV-REDLGSDVDLILDGGPCTVGVESTIVDLSSGDPA-ILRPGGLAAEELEHVLGR 175

Query: 209 ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-HVNPREALIRFGNVPIKNIENAIISL 267
            +   V  TS+ +  G L SHYAPR+ V L  +     R   +R   + +  +  A ++L
Sbjct: 176 PVP--VRATSSVRVSGSLASHYAPRAGVTLVEVPEAAARAQALRGQGLRVGVLGPASLAL 233

Query: 268 -----NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                          AA +L+  ++ AD +G   +        GLG+A+ +RL RAAAPR
Sbjct: 234 PPGVPRFDMPEDPAGAAHDLYLRLREADLAGLDLLLACLPSARGLGLAVRDRLARAAAPR 293

Query: 323 NQS 325
              
Sbjct: 294 TSG 296


>gi|254291504|ref|ZP_04962295.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422568|gb|EDN14524.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 328

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 172/330 (52%), Gaps = 23/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E ++  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVMQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I     E L   GN+ I  +   +  L  S+   LK    EA A+    Y  +A  D
Sbjct: 242 LRVIDALENE-LATAGNIKIALLH--LSELQASEQRLLKPMPQEAKAYGQALYRSLAEVD 298

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 299 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 328


>gi|254497395|ref|ZP_05110195.1| Sua5/YciO/YrdC/YwlC family protein [Legionella drancourtii LLAP12]
 gi|254353374|gb|EET12109.1| Sua5/YciO/YrdC/YwlC family protein [Legionella drancourtii LLAP12]
          Length = 323

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 108/326 (33%), Positives = 161/326 (49%), Gaps = 27/326 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVK 71
           A   L AG P+AIPTETVYGLA    N  AI+ ++ +K+RP  +PLI HV+   D+S + 
Sbjct: 11  AVHDLQAGKPVAIPTETVYGLAAPINNEQAIKAVFAMKERPLNHPLIVHVAANWDLSTLV 70

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
               +   +  L K FWPGPLTLVL   + T I+PL      T   R P     ++L+  
Sbjct: 71  T--DIPAYANLLIKKFWPGPLTLVLR-CNPTQINPLINGGQTTVAIRCPAHPLAQELLTQ 127

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+  PSAN  G++S T   H+   S  ++   I+DGG   +G+ESTIV+    +  +
Sbjct: 128 LRIPVVAPSANPFGKVSPTTALHV-QESFPQQALTILDGGRCTVGIESTIVDASNPEHYQ 186

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           ILR G ++ +++   I+       D+ S  + PG L SHY P+  +   A +    E L 
Sbjct: 187 ILRHGLIDEQSIAAVITAPAR---DQPSRIRVPGKLDSHYQPQKTLYYFADY----EHLA 239

Query: 251 RFGNVPIKNIENAIISLNLSKT----------GKLKEAAFNLFNYMKIADDSGASSIAFS 300
           +F      + E   I+     T           + ++AAF+L+  ++ AD S A  IA  
Sbjct: 240 QFCQQ--SSAEIYAIASKCPATVHHEHYHPLATQPEQAAFDLYFQLRAADASNAQCIAIE 297

Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQ 326
             P +GL   I  R+ +A  P    Q
Sbjct: 298 LPPENGLWQGIRERILKAGIPYAAEQ 323


>gi|297543678|ref|YP_003675980.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841453|gb|ADH59969.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 354

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 171/336 (50%), Gaps = 32/336 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + +  G  +A PTETVYG+  +S +  A+++++ +K RP  NPLI H++++  +    
Sbjct: 20  AAKVIREGGLVAFPTETVYGIGANSFDEEAVKKIFMVKGRPQDNPLIVHIAELEQIYDLV 79

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
              P     L + FWPGPLTL+     +  +  ++TA + T   R+P       LI+   
Sbjct: 80  EDIPQKAKILMEKFWPGPLTLIFK--KSQKVPYVNTAGMDTVAIRMPSDTIAHLLIKRAK 137

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P++ PSAN SG+ S T+  H++   +  ++ +IIDGG    G+EST++++  EK   +L
Sbjct: 138 VPISAPSANVSGKPSPTDASHVV-EDLDGKVDIIIDGGKCDFGVESTVLDL-TEKMPVVL 195

Query: 193 RPGGLEIETLKRAI-SVELEYCVDETS----TPQSPGMLKSHYAPRSQVRL--------- 238
           RPG + +E LK  I +VE++  + +       P+SPGM   HY+P ++V +         
Sbjct: 196 RPGAVTLEMLKEVIGNVEVDPSLLKKPKGNLKPKSPGMKYKHYSPNAEVYIVKGDLEKVV 255

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL---------KEAAFNLFNYMKIA 289
           + I     E L ++G      I   + +    K G++         +  A NLF  ++  
Sbjct: 256 KKIQELTEEQL-KYGKKV--GIMATVQTSTQYKKGEIIVVGDRKRPETIAKNLFAVLRQF 312

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           D  G   I   S   + +G+AI NRLE+AA  +  S
Sbjct: 313 DKKGVDVIFAESFEYNNIGLAIMNRLEKAAGYKEIS 348


>gi|227830451|ref|YP_002832231.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.S.2.15]
 gi|227456899|gb|ACP35586.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.S.2.15]
          Length = 358

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 158/329 (48%), Gaps = 22/329 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KA   + AG  +  PTETVYGL  ++ +  A+++++  K RP  NPLI H+S+I  
Sbjct: 15  DKIKKAASVIKAGGTVVFPTETVYGLGANALDAEAVKKIFIAKNRPMDNPLIVHISNIDQ 74

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A   P   +++ K+ WPGPLT VL    T  +   +T  L T   R+P       L
Sbjct: 75  LYEVAKDIPEKIINIVKIVWPGPLTFVLK--KTDKVPKETTGGLDTIAVRMPAHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I     P+A PSAN + + S T  +H++     K + +++D G +  G+EST++NV  + 
Sbjct: 133 INESDVPIAAPSANLATKPSPTKAEHVIDDLFGK-VDVVLDSGETFFGVESTVINVTVDP 191

Query: 188 KVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR------ 237
            V +LRPG   +E L+R     I  E      E S   +PGM   HYAP  +        
Sbjct: 192 PV-LLRPGPFSVEELERIFGKIIIPEQAKGTGEFSVALAPGMKYKHYAPTKKFLVVENRG 250

Query: 238 -LRAIHVNPREALIRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
            LR +    RE   R   +    +     E  I  + L     L E + NLF   +  D 
Sbjct: 251 ILRDVIKELREKGYRVVFLCAHEVCKQFQEEKIEIIELGSENNLYEISRNLFGSFRKLDK 310

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S A      S+   G+G+AI NR  +A+ 
Sbjct: 311 SNADIGIIHSVSERGIGLAIMNRTRKASG 339


>gi|258626302|ref|ZP_05721149.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581354|gb|EEW06256.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 322

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 18/328 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 5   QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPL 63

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H      + + A+ V P +  LA+ FWPGPLT++L       + P+ T  L+T   RV
Sbjct: 64  IVHFGSAEQIAEWATDVAPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 121

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLES
Sbjct: 122 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 181 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKT--R 234

Query: 238 LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIA--DDS 292
           LR I     E   +  +V I  +   E       L K       A+    Y  +A  D  
Sbjct: 235 LRVIDNVQNELATQASDVKIALLHLSEQQASEQRLLKPMPQDAKAYGQALYRSLAEVDKW 294

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G   I     P     +A+++RL RAA+
Sbjct: 295 GVDEIWLERPPQGEAWLAVHDRLRRAAS 322


>gi|221069970|ref|ZP_03546075.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1]
 gi|220714993|gb|EED70361.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1]
          Length = 332

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 172/342 (50%), Gaps = 37/342 (10%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T   +++ A   L  G  + +PTETVYGLA DS N  A+ +++  K RPA +PLI 
Sbjct: 2   ILDGTLEASVQAAALALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + + ++A   P  +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADAAAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119

Query: 122 GFTKKLI---------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 +           +G  ++ PSAN+ G++S T  +H+ +     E  L++DGG  
Sbjct: 120 HPVAHAVLQACQQLDPPVWG--VSAPSANKFGRVSPTTAEHVATE--FGEALLVLDGGAC 175

Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLK 227
           ++G+ESTIV+  C + V + LRPG +  + ++RA  +    + E   D   TP++ G L 
Sbjct: 176 EVGIESTIVD--CTRGVPVLLRPGAITRDDIERACGLRPLSKEELTAD---TPRASGTLL 230

Query: 228 SHYAPRSQVRLRAIHVNPREALIRFG----NVPIK-----NIENAIISLNLSKTGKLKEA 278
           +HYAP ++VRL       + AL   G    N+ I      N+  A + L    + + ++ 
Sbjct: 231 AHYAPNAKVRLMDAG-QLQSALDILGKDGRNIAIYHRGPLNVTTAQLLLR-RMSDEPRDV 288

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           A  LF  ++  DD GA  I   + P+      + +RL+RAAA
Sbjct: 289 ARELFGMLRNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330


>gi|187777267|ref|ZP_02993740.1| hypothetical protein CLOSPO_00819 [Clostridium sporogenes ATCC
           15579]
 gi|187774195|gb|EDU37997.1| hypothetical protein CLOSPO_00819 [Clostridium sporogenes ATCC
           15579]
          Length = 355

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 174/338 (51%), Gaps = 32/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + KA   L  G  +  PTETVYGL  ++ +  A+++++E K RP  NPLI H+S +
Sbjct: 18  DEHIISKAGNILRQGGLVVFPTETVYGLGANALDKDAVKKIFEAKGRPQDNPLIVHISKV 77

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124
             ++K    + P++  L   FWPGP+T++   L   DI P  T A L +   R+P     
Sbjct: 78  KDIEKLVEKIPPIAQKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T+++  +   +   +  I+ G  S++G+EST+++  
Sbjct: 135 MELISMAGVPIAAPSANLSGKPSPTDLETCV-EDLDGRVNAILGGDNSEVGVESTVIDCT 193

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLR 239
            +    ILRPGG+ +E LK   S + ++  +    D+   P++PGM   HYAP++ +++ 
Sbjct: 194 IDPPC-ILRPGGITLEMLKEVDSNIYIDPAIMKKPDKELRPKAPGMKYRHYAPKAPLKII 252

Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282
              +N              +A  + G +   + I+N     ++S+   K   L   A NL
Sbjct: 253 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGEVVSIGSRKD--LNTIAHNL 310

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 311 FYVLRTFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 348


>gi|160947260|ref|ZP_02094427.1| hypothetical protein PEPMIC_01193 [Parvimonas micra ATCC 33270]
 gi|158446394|gb|EDP23389.1| hypothetical protein PEPMIC_01193 [Parvimonas micra ATCC 33270]
          Length = 341

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 173/348 (49%), Gaps = 45/348 (12%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T  N  R A   L+  + +AIPTETVYGL  +  +  A+ ++++ K RP  NPLI
Sbjct: 3   EILKPTRENIERSAKLILNDKI-VAIPTETVYGLGANGLSDIAVSKIFKAKNRPQDNPLI 61

Query: 62  CHVSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118
            H+SD  M++   +   D +   L   FWPGPLT+V   +   DI P + +  L T   R
Sbjct: 62  LHISDYDMMENLVYELNDEIKEFLNH-FWPGPLTVV---MKKKDIIPDAISCGLDTVAIR 117

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P     +  I+  G P+A PSAN SG+ S T  + + +    K I +I+DGG+  IG+E
Sbjct: 118 MPNNEIARSFIKQCGVPIAAPSANISGKPSPTTAEDVFTDMNGK-ISVILDGGLCNIGIE 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAP 232
           ST++++  +K   ILRPG     T +  +  E E  +D     E + P+SPG    HYAP
Sbjct: 177 STVLDL-TKKPYTILRPG---FYTKEDFLKYEDEILIDDAIVTENTIPKSPGQKYKHYAP 232

Query: 233 RSQVRLRAIHVNPR-----EALIR---------------FGNVPIKNIENAIISLNLSKT 272
            ++V + +     +     E +I+               F NV  +NI      L+L   
Sbjct: 233 NAKVVVISTKDRKKSSMEIEKIIKENKGLKIGIFKFDETFLNVESENI------LSLGSV 286

Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             LKE +  LF  ++  D+     I        GLG +I NRL+++A+
Sbjct: 287 FDLKEMSKILFKGLREFDEKNVDLIVVEGCDEKGLGFSIMNRLKKSAS 334


>gi|258621755|ref|ZP_05716786.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585986|gb|EEW10704.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 329

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 167/328 (50%), Gaps = 18/328 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H      + + A+ V P +  LA+ FWPGPLT++L       + P+ T  L+T   RV
Sbjct: 71  IVHFGSAEQIAEWATDVVPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLES
Sbjct: 129 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIA--DDS 292
           LR I     E   +  +V I  +   E      +L K       A+    Y  +A  D  
Sbjct: 242 LRVIDHVENELATQASDVKIALLHLSEQQASEQSLLKPMPQDAKAYGQALYRSLAEVDKW 301

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G   I     P     +A+++RL RAA+
Sbjct: 302 GVDEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|169832288|ref|YP_001718270.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639132|gb|ACA60638.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 358

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 156/330 (47%), Gaps = 21/330 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +  A   +  G  +A PTETVYGL  ++ +  A++R++ +K RP  NPLI HV + 
Sbjct: 24  DRRTITAAAALIREGGLVAFPTETVYGLGANALDRQAVKRVFAVKGRPDDNPLIVHVGER 83

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           + +      + P +  L  LFWPGPLTLVL    +  + P  TA L     R+P      
Sbjct: 84  AEISGLVRDLPPSAEKLIGLFWPGPLTLVLP--RSDRVSPAVTAGLDKVAVRMPAHPVAL 141

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T   H+L   +   I  ++DGG   +G+EST++++  
Sbjct: 142 ALIREAGVPVAAPSANTSGRPSPTTAAHVL-EDLDGRIEAVLDGGPVPVGVESTVLDLTV 200

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV--------- 236
              V ILRPGG+    L   +   + +       PQ+PGM   HYAPR+ +         
Sbjct: 201 SPPV-ILRPGGVTGRQLAAVLGAVVHHPEAAPGRPQAPGMKYRHYAPRTPLVLVEGPPAA 259

Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA---FNLFNYMKIAD 290
              R+R +    R +  R   +   +         +   GK  +       L++ ++  D
Sbjct: 260 VTARIRELAAAARASGERVAVLARTDTAAYYPDGPVVPCGKSNDPGSAAAALYSALRECD 319

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             GA  I    +   GLG A+ NRL +AAA
Sbjct: 320 ALGADLILAEGLAAEGLGRAVMNRLRKAAA 349


>gi|302694065|ref|XP_003036711.1| hypothetical protein SCHCODRAFT_63438 [Schizophyllum commune H4-8]
 gi|300110408|gb|EFJ01809.1| hypothetical protein SCHCODRAFT_63438 [Schizophyllum commune H4-8]
          Length = 397

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 163/368 (44%), Gaps = 58/368 (15%)

Query: 9   SNALRKACEFLDAGL-----PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           S+A R A       L     P+  PTETVYGL   + + +A   ++  K RPA NPLI H
Sbjct: 25  SDATRDALNIASHNLITLRRPVVFPTETVYGLGALALDSSAASLIFSTKGRPADNPLIVH 84

Query: 64  VSDISMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           VS +SM+      D    P    L K FWPGPLT++    +   +  + TA   T   R+
Sbjct: 85  VSSMSMLHSILPPDYTFPPSYQVLMKHFWPGPLTMLFPRHAAI-VPDIITAGQDTVAIRM 143

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + LI     PLA PSAN SG+ S T  +H+    +  ++ +I+DGG   +GLES
Sbjct: 144 PSHPVARALIAVANAPLAAPSANSSGKPSPTRAEHVY-RDLGDKVDVILDGGPCGVGLES 202

Query: 179 TIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYC-------------VDET--STPQS 222
           T+V+ +  +  +R+LRPGG+ +E L+R +  EL+                DE   + P +
Sbjct: 203 TVVDGLNADGHLRVLRPGGVTVEDLERTLREELQASGSVPRVLVHRRDYRDEAMEAAPTT 262

Query: 223 PGMLKSHYAPRSQVRLRAIHVNPREALIR----------FGNVPIKNIENAI-------- 264
           PGM   HY+P   V L     NP E   R              P + I   +        
Sbjct: 263 PGMKYKHYSPSVPVILVNTLSNPSEPKQRQTIDSLVASLQARYPARPIHAGLMTPDDSRL 322

Query: 265 ---------ISLNLSKTGKLKEAAF---NLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
                    IS  L   GK+ E A     LF+     D  G  +I    +     G+A+ 
Sbjct: 323 AQVLHTHESISWRLFPLGKVSEPAVIAQRLFDGFLTLDREGVDAILIEGVAEEEEGLAVM 382

Query: 313 NRLERAAA 320
           NR+ +AA 
Sbjct: 383 NRVRKAAG 390


>gi|146423277|ref|XP_001487569.1| hypothetical protein PGUG_00946 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 403

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 164/328 (50%), Gaps = 39/328 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PTETVYGL   + +  +++ +Y+ K RPA NPLI HVS IS +K+   + P +  + 
Sbjct: 75  IGFPTETVYGLGGSALSDESVKSIYKAKNRPADNPLIVHVSSISQLKR--KILPPNYQIP 132

Query: 85  KL-------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
           K+       FWPGPLT++L +  ++ I    TA   T   R+P     + LI     PLA
Sbjct: 133 KVYESLIHKFWPGPLTILLPVHESSPILKFVTAGQSTFAVRIPQHPVARALIALSDTPLA 192

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN S + S T   H+  + +   IP I+DGG    G+E T+V+   +  + +LRPGG
Sbjct: 193 APSANASTRPSPTIASHVY-NDLQGRIPYILDGGSCDFGVELTVVDGLVDPPM-LLRPGG 250

Query: 197 LEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           + +E +K          V  +    +T   ++PGM   HY+P ++V L     + +EA+ 
Sbjct: 251 VSLEEIKLVGGEPWKDVVVAKKTAGKTEAVRTPGMKYRHYSPTARVVLFVNCGDGKEAID 310

Query: 251 RFGNVPIKNIENAIISL-------NLSKTGKLKEA------------AFNLFNYMKIADD 291
            +  +   N+++  I+L        +S T   KE+            + NLF Y++  D+
Sbjct: 311 NY--ISSHNLQDCKIALLKSRHFVGISSTSANKESIDRELGTDGHTISHNLFRYLREVDE 368

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
           +G   I    I     G+A+ NRL +AA
Sbjct: 369 TGVDMIFVEGIEETNEGLAVMNRLSKAA 396


>gi|229520488|ref|ZP_04409913.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
 gi|297578682|ref|ZP_06940610.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|229342586|gb|EEO07579.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
 gi|297536276|gb|EFH75109.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 329

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I    RE   +   + I  +   + +L  S+   LK    EA A+    Y  +A  D
Sbjct: 242 LRVIDDLARELATQSDELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|154500228|ref|ZP_02038266.1| hypothetical protein BACCAP_03892 [Bacteroides capillosus ATCC
           29799]
 gi|150270960|gb|EDM98234.1| hypothetical protein BACCAP_03892 [Bacteroides capillosus ATCC
           29799]
          Length = 341

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 168/338 (49%), Gaps = 40/338 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E L  G  + IPTETVYGL     +P A+  ++  K RP  NPLI HV    
Sbjct: 8   AQDIQEAAEILKRGGLLGIPTETVYGLGASGLDPEAVAHIFAAKGRPQDNPLILHVPSAD 67

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GFTK 125
            ++++    P + + LA+ FWPGP+T++   L    I P + TA L T   R P  G T+
Sbjct: 68  WLERYCEDIPDAAYALAERFWPGPMTMI---LRRKPIVPDAVTAGLDTVGMRCPDHGVTR 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            +I   G P+A PS N SG+ S T+   +L     K I  I+DGG   +G+ESTI+++  
Sbjct: 125 AIIAAAGVPVAAPSGNTSGRPSPTSAADMLEDMDGK-IDGIVDGGPCTVGVESTIIDLTL 183

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETST--------PQSPGMLKSHYAPRSQVR 237
               R+LRPGG+ +E L+ A+    E  VD+  T        P++PGM   HYAP + V 
Sbjct: 184 TPP-RLLRPGGVTLEQLRDALG---EVDVDQAVTRLMGKDEHPRAPGMKYRHYAPEAPVT 239

Query: 238 LRA-----------IHVNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
           +              H+ P+  +I F    G+     +E       +      +E A  +
Sbjct: 240 VVKGPADKTAAYIRDHLGPKSGVICFDEFAGDFSGYPVE------TMGPAADKEEQARRV 293

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F+ ++  D +    I      + G+G+A++NRL +AA 
Sbjct: 294 FDALRYFDSTDVEEIWSQCPDDGGIGLAVSNRLNKAAG 331


>gi|153824989|ref|ZP_01977656.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149741501|gb|EDM55531.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 329

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I    RE   +   + I  +   + +L  S+   LK    EA A+    Y  +A  D
Sbjct: 242 LRVIDDLARELATQSDELHIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|229525692|ref|ZP_04415097.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229339273|gb|EEO04290.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 329

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I    RE   +   + I  +   + +L  S+   LK    EA A+    Y  +A  D
Sbjct: 242 LRVIDDLARELATQSNELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|327483788|gb|AEA78195.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3894-4]
          Length = 322

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 5   QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 63

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 64  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 121

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 122 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 181 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 234

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I    RE   +   + I  +   + +L  S+   LK    EA A+    Y  +A  D
Sbjct: 235 LRVIDDLARELATQSDELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 292

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 293 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 322


>gi|15641092|ref|NP_230724.1| hypothetical protein VC1079 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587076|ref|ZP_01676853.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121726330|ref|ZP_01679620.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673908|ref|YP_001216548.1| hypothetical protein VC0395_A0598 [Vibrio cholerae O395]
 gi|153213572|ref|ZP_01948862.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153816970|ref|ZP_01969637.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821905|ref|ZP_01974572.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081253|ref|YP_002809804.1| hypothetical protein VCM66_1035 [Vibrio cholerae M66-2]
 gi|229511006|ref|ZP_04400485.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
 gi|229518127|ref|ZP_04407571.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
 gi|229608343|ref|YP_002878991.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
 gi|254848208|ref|ZP_05237558.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298498815|ref|ZP_07008622.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655547|gb|AAF94238.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548711|gb|EAX58760.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121631276|gb|EAX63649.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124115908|gb|EAY34728.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|126512557|gb|EAZ75151.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520613|gb|EAZ77836.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146315791|gb|ABQ20330.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227009141|gb|ACP05353.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012895|gb|ACP09105.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229344842|gb|EEO09816.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
 gi|229350971|gb|EEO15912.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
 gi|229370998|gb|ACQ61421.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
 gi|254843913|gb|EET22327.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297543148|gb|EFH79198.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 329

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I    RE   +   + I  +   + +L  S+   LK    EA A+    Y  +A  D
Sbjct: 242 LRVIDDLARELATQSDELRIALLN--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|159485276|ref|XP_001700672.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272104|gb|EDO97910.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 340

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 160/346 (46%), Gaps = 48/346 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L  G  +AIPTETVYGLA ++ +  A+ R+Y  K RPA NPLI HVS ++M+ 
Sbjct: 1   IARAASILAEGGVVAIPTETVYGLAANALSAEAVGRVYAAKNRPADNPLIIHVSSLAML- 59

Query: 72  KHASVDPLSLHLAKLF-------WPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-G 122
             A + P    L  ++       WPGPLT+   LL  + + P + T  L T   R+P   
Sbjct: 60  --AGLYPPGWELPPIYEPVLRDLWPGPLTV---LLPRSPLVPDAVTCGLPTMAVRMPAHP 114

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               LI   G PLA PSAN SG+ S T  KH+ +      IPLI+DGG    G+EST+++
Sbjct: 115 VALALIAACGFPLAAPSANSSGRPSPTLAKHVAADLGGGVIPLILDGGACSCGVESTVLD 174

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDET--STPQSPGMLKSHYAPRSQVRLR 239
                   ILRPGG+  E L     +E L+   D    + P +PGM   HY+P + V   
Sbjct: 175 -ALRSPPAILRPGGVTREALVGYRGLEALQDFTDAALEAAPTTPGMKYRHYSPTAPV--- 230

Query: 240 AIHVNPREALIRFGNVPIKNIENA-------------------------IISLNLSKTGK 274
            I ++P                 A                         +I   L    +
Sbjct: 231 -ILLDPSPPAAAATAAATAAAAAAVAVAVAVAVAAATAGAGTRAVAAQRVIEYVLGHVSR 289

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             E A  LF  ++  D++G   I    + + G G+A+ NRL +AA+
Sbjct: 290 PAEVATELFAGLRALDEAGCVVIVVEGVADEGAGVAVMNRLRKAAS 335


>gi|262165359|ref|ZP_06033096.1| YrdC family protein [Vibrio mimicus VM223]
 gi|262025075|gb|EEY43743.1| YrdC family protein [Vibrio mimicus VM223]
          Length = 329

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 18/328 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H      + + A+ V P +  LA+ FWPGPLT++L       + P+ T  L+T   RV
Sbjct: 71  IVHFGSAEQIAEWATDVAPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLES
Sbjct: 129 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIA--DDS 292
           LR I     E   +  +V I  +   E       L K       A+    Y  +A  D  
Sbjct: 242 LRVIDHVEYELATQASDVKIALLHLSEQQASEQRLLKPMPKDAKAYGQALYRSLAEVDKW 301

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G   I     P     +A+++RL RAA+
Sbjct: 302 GVDEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|86608509|ref|YP_477271.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557051|gb|ABD02008.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 363

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 175/364 (48%), Gaps = 52/364 (14%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+S T  +    A   L   L +AIPTETVYGLA +  +  A+  ++  K+RP  +PLI
Sbjct: 4   EILSPTPEHIAVAAAALLRGQL-VAIPTETVYGLAGNGLDEQAVANIFAAKERPRFDPLI 62

Query: 62  CHVS-------------DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS 108
            H+              D+S     A    L   L   FWPGPLTLVL    T  +  L 
Sbjct: 63  LHLPAGVTLEQLQGWLVDVSAFTPAARA--LLGSLIDTFWPGPLTLVLPKCPT--VPDLV 118

Query: 109 TANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           ++ L T   RVP     + L++    PLA PSANR G+IS T+ + +  + +   IP I+
Sbjct: 119 SSGLPTVALRVPAHPVAQALLQAVQTPLAAPSANRFGRISPTSAQAVY-AELGGRIPYIL 177

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE------TSTPQ 221
           DGG   +GLEST++ +  E    +LRPGG+ +E L+  + + +    ++      T  P+
Sbjct: 178 DGGECAVGLESTVLKLSPEGIPTLLRPGGIPLEALEAHLGLPIRLPPEQAPKDGTTGPPE 237

Query: 222 SPGMLKSHYAPRSQVRLRAI---HVNPRE--------------ALIRFGNVPIKNIENAI 264
           +PG L SHYAP   +RL       + P +               ++ F   P + + N +
Sbjct: 238 APGRLSSHYAPSKPLRLLPTPFAQLQPGDWQQVQHLTTGHSHLGILSFATDP-QALLNTL 296

Query: 265 ------ISLNLSKTGK-LKEAAFNLFNYMKIADDSGASSIAFSSIP-NHGLGIAINNRLE 316
                 I+ +L   G   K AA  LF  ++  D+  A+ +     P + GLG A+ +RL 
Sbjct: 297 SRHWPGITFSLECLGSDPKAAARALFASLRRLDEGDATLLLAEPPPISTGLGYAMMDRLR 356

Query: 317 RAAA 320
           RA++
Sbjct: 357 RASS 360


>gi|50552650|ref|XP_503735.1| YALI0E09449p [Yarrowia lipolytica]
 gi|49649604|emb|CAG79325.1| YALI0E09449p [Yarrowia lipolytica]
          Length = 373

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 153/305 (50%), Gaps = 36/305 (11%)

Query: 5   SITDSN---ALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           SI+DS    AL+ A   L     P+A PTETVYGL   + +  +++ +Y  K RPA NPL
Sbjct: 25  SISDSETLEALKHASHVLQTTHEPVAFPTETVYGLGASALSTESVKSIYAAKNRPADNPL 84

Query: 61  ICHVSDISMVK----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I HVS +  +K    K   +  +   L + FWPGPLT++L L S +D+ P  T    T  
Sbjct: 85  IVHVSSLDQLKRKILKGREIPDVYTPLIEKFWPGPLTILLPLDSDSDVSPACTVGQPTVA 144

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI     PLA PSAN S + S T   H+    +   IPLI+DGG   +G
Sbjct: 145 VRMPDHPVARSLIALSDLPLAAPSANASTRPSPTTADHVY-HDLQGRIPLILDGGACHVG 203

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--------DETSTPQSPGMLK 227
           +EST+V+   +  + +LRPGG+ +E ++     + +  +        DE    ++PGM  
Sbjct: 204 VESTVVDGLSDPPM-LLRPGGVSLEQIREHGGEKWKNVLVGRANAKTDEAV--RTPGMKY 260

Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
            HY+P  +V L             FG V  K++E A+     S  G+L+     L   + 
Sbjct: 261 KHYSPTGKVVL-------------FGPVSDKSVEQAVKEYVTS--GELEGKKIGLLTSLT 305

Query: 288 IADDS 292
           +++D+
Sbjct: 306 LSNDT 310


>gi|119953512|ref|YP_945721.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia turicatae 91E135]
 gi|119862283|gb|AAX18051.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia turicatae 91E135]
          Length = 336

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 165/332 (49%), Gaps = 27/332 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I +   ++KA + + AG  +  PTETVYG+  ++ N  AIR ++ +K+RP  NPLI HV 
Sbjct: 8   IIEQLEIKKAAKLIRAGELVVFPTETVYGIGANAYNDDAIRMIFLVKRRPITNPLIVHVE 67

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            I  +K+     P S L L + F PGPLT +L   +   I    +  L +   R+P    
Sbjct: 68  SIEKIKELVEYIPKSALILMQKFTPGPLTFILK--NAGKISNFISGGLDSIAVRIPSEPV 125

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-----SKIGLES 178
             KLI+  G P+A PSAN S + S TN +  +     +E+  ++ G I     SKIG+ES
Sbjct: 126 ALKLIKMSGVPIAAPSANLSRRPSATNFEMAI-----RELDGLVKGIIKKNEESKIGIES 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           T++    +  + ILRPG +  E +++ +     +EY V +    +SPG L  HY PR  V
Sbjct: 181 TVIGFDSKGNISILRPGSITKEMIEKELKGKFRVEYSVGKEMLSKSPGNLLEHYKPRIPV 240

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT---------GKLKEAAFNLFNYMK 287
            L     N R+   R  +  +  ++  + S   +K+           L+E A N++    
Sbjct: 241 YLFKQKDNIRQYASR-QDTKVLIMKATLNSYWFNKSWNMNNICVFNTLEEYAKNIYKVF- 298

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +  +     I    + N  LG +INNRL++A+
Sbjct: 299 VESEKTYKQILAEFVDNSQLGYSINNRLKKAS 330


>gi|153828152|ref|ZP_01980819.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876394|gb|EDL74529.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 329

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I    RE   +   + I  +   + +L  S+   LK    EA A+    Y  +A  D
Sbjct: 242 LRVIDDLARELATQSDELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 300 KWGVDEIWLERPPEGEAWLAVHDRLRRAAS 329


>gi|218135384|ref|ZP_03464188.1| hypothetical protein BACPEC_03289 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990769|gb|EEC56780.1| hypothetical protein BACPEC_03289 [Bacteroides pectinophilus ATCC
           43243]
          Length = 353

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 176/351 (50%), Gaps = 42/351 (11%)

Query: 2   QIMSITDSNAL--RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           QI      +AL   KA + L +G  +A PTETVYGL  D+ N  A R++Y  K RP+ NP
Sbjct: 7   QITGNESEDALIYEKASKILRSGGLVAFPTETVYGLGGDALNKDASRKIYAAKGRPSDNP 66

Query: 60  LICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D + + K A   P  +L LA  F PGP+T++L       +   +T  L T   R
Sbjct: 67  LIVHIADRNDLYKLAEEVPETALKLADAFMPGPITIILKKKEC--VPGETTGGLDTVAIR 124

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      ++I   G  +A PSAN SG+ S T  K+++   +  ++ +II      IG+E
Sbjct: 125 MPRHPVAARMIRESGVYVAAPSANTSGRPSPTKAKYVIED-LNGKVDMIIADDTVDIGIE 183

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS------TPQSPGMLKSHY 230
           STIV++  E+   +LRPG + +E L++ +  VE++  V+  +       P++PGM   HY
Sbjct: 184 STIVDL-SEEVPTVLRPGYITLEMLRKVLGRVEIDKAVEAGNILASDIAPKAPGMKYRHY 242

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENA-------------------IISLNLSK 271
           AP++++ +  +  N      +   +  K +E+                    + SL L  
Sbjct: 243 APKAELTI--VSGNEDSVAQKINELVSKRLEDGAKVGIMTTDENIYRYTKGEVRSLGL-- 298

Query: 272 TGKLKEA--AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             +  EA  A NLF  ++  DD GA  I   +  N  +G A+ NRL +AA 
Sbjct: 299 --RADEATVAKNLFAVLREFDDIGAEYIYSEAFANSNVGQAVMNRLIKAAG 347


>gi|255745495|ref|ZP_05419443.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262158430|ref|ZP_06029546.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
 gi|262170292|ref|ZP_06037979.1| YrdC family protein [Vibrio cholerae RC27]
 gi|255736570|gb|EET91967.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262021307|gb|EEY40021.1| YrdC family protein [Vibrio cholerae RC27]
 gi|262029871|gb|EEY48519.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
          Length = 322

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 5   QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 63

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 64  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 121

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 122 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 181 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 234

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I    RE   +   + I  +   + +L  S+   LK    EA A+    Y  +A  D
Sbjct: 235 LRVIDDLARELATQSDELRIALLN--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 292

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 293 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 322


>gi|149183887|ref|ZP_01862278.1| SUA5 protein [Bacillus sp. SG-1]
 gi|148848406|gb|EDL62665.1| SUA5 protein [Bacillus sp. SG-1]
          Length = 348

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 169/329 (51%), Gaps = 32/329 (9%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A +FL     +A PTETVYGL  ++++  A+ +++  K RP+ NPLI H+S+   + + 
Sbjct: 23  EASQFLKDNEVVAFPTETVYGLGANAKSDEAVDKIFAAKGRPSDNPLIVHISNSEQLNEL 82

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
               P +   + + FWPGPLT++        +    TA L +   R+P       LIE  
Sbjct: 83  VEEIPEAAQIMMEHFWPGPLTIIFKKKEGV-LSEKVTAGLDSVGIRMPDHPVALALIEAA 141

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+A PSAN SG+ S T   H+ +  +   I  +I+GG + +G+EST+V+   E  V I
Sbjct: 142 NLPIAAPSANVSGRPSPTTAHHV-TQDLDGRISGVINGGETGVGVESTVVDCTSEIPV-I 199

Query: 192 LRPGGLEIETLKRA---ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RA 240
           LRPGG+  E L+ A   + V+      E   P+SPGM  +HYAP + + L        ++
Sbjct: 200 LRPGGVTKEQLEEAAGPVLVDPSLAKGE-GAPKSPGMKYTHYAPDAPLILLDGKREWIQS 258

Query: 241 IHVNPREALIRFG------NVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIADD 291
           +    R+A ++ G      N      +  ++S   L+LS        A +L++ ++  ++
Sbjct: 259 LVEEKRQAGMKVGILTTEENARFYQADKILVSGSRLDLSTV------AHSLYDVLRSFNE 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S    I   + P  G+G+AI NRL++AA 
Sbjct: 313 SDVDIIFSETFPQEGVGMAIMNRLQKAAG 341


>gi|257888291|ref|ZP_05667944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,141,733]
 gi|257824345|gb|EEV51277.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,141,733]
          Length = 311

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 22/308 (7%)

Query: 32  VYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPG 90
           +YGL  ++  P  +++++ +K RP  NPLI HV+    VK++  +  P +  + K FWPG
Sbjct: 1   MYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPETEKIVKNFWPG 60

Query: 91  PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149
           PLTL+  +   T +  + T  L TA FR+P    T ++IE  G PL  PSAN SG+ S T
Sbjct: 61  PLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPT 119

Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAISV 208
              H+    +  +I  IID G ++IG+EST++++     +  ILRPG +  E ++  I  
Sbjct: 120 TADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIES 178

Query: 209 EL---EYCVDETSTPQSPGMLKSHYAPRSQVRL-------RAIHVNPREALIRFGNVPIK 258
            +   ++ V E  TP++PGM   HY+P ++V +        A+    +   IR G +   
Sbjct: 179 PVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVREGDWSTAVQW-AKNKKIRVGVIASP 237

Query: 259 NIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS--GASSIAFSSIPNHGLGIAIN 312
            I + +     ++ +     ++ AA  LF  ++  D+   G   I     P  GLG A  
Sbjct: 238 EISDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYM 297

Query: 313 NRLERAAA 320
           NRL++AA 
Sbjct: 298 NRLKKAAG 305


>gi|262171882|ref|ZP_06039560.1| YrdC family protein [Vibrio mimicus MB-451]
 gi|261892958|gb|EEY38944.1| YrdC family protein [Vibrio mimicus MB-451]
          Length = 322

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 166/328 (50%), Gaps = 18/328 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 5   QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPL 63

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H      + + A+ V P +  LA+ FWPGPLT++L       + P+ T  L+T   RV
Sbjct: 64  IVHFGSAEQIAEWATDVVPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 121

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLES
Sbjct: 122 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 181 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKT--R 234

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-----LKEAAFNLFNYMKIADDS 292
           LR I     E   +  +V I  +  +    N  +  K      K     L+  +   D  
Sbjct: 235 LRVIDHVENELATQASDVKIALLHLSEQQANEQRLLKPMPQDAKAYGQALYRSLAEVDKW 294

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G   I     P     +A+++RL RAA+
Sbjct: 295 GVDEIWLERPPQGEAWLAVHDRLRRAAS 322


>gi|330719387|ref|ZP_08313987.1| putative translation factor [Leuconostoc fallax KCTC 3537]
          Length = 337

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 161/323 (49%), Gaps = 24/323 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + L  G  +A PTETVYGL   + +  A+R+++  K RP+ NPLI  V+D +MV++ A
Sbjct: 16  AGKLLSQGEVVAFPTETVYGLGAVATDEVAVRKVFTAKGRPSDNPLIVTVADKAMVQQFA 75

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             + +S  L   FWPG LT++L + +        T  L T  FR+P     + +I     
Sbjct: 76  VENDMSQKLMAAFWPGSLTIILPMRAQA-FSMTVTGGLNTVAFRLPDNEVARAVIRAAKA 134

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+  PSAN SG+ S T  +H+    +  +I  I+D G + +G+EST+++V       ILR
Sbjct: 135 PIVGPSANTSGKPSPTTAQHVW-HDMAGKIAAIVDDGPTTVGVESTVIDVSGNVPT-ILR 192

Query: 194 PGGLEIETLKRAISVELEYCVDETS--------TPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           PG +  E L   ++V  +   D T+        TP++PGM   HYAP   V +    ++ 
Sbjct: 193 PGAITQEQL---VAVLAQPVHDATTTESVASDVTPKAPGMKYRHYAPDKHVVMFD-ELDA 248

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIADDS-GASSI 297
            +   +  +  +   ++ I+     K+ +       L+ A   LF+ ++  DD     +I
Sbjct: 249 VDLAQKLQDNDVVMAQDRILQAMAIKSQQAWSLGDSLESATEQLFSGLRFYDDQPKVGTI 308

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
               +   GLG A NNRL +AA 
Sbjct: 309 YVQKMIPVGLGKAYNNRLAKAAG 331


>gi|229505324|ref|ZP_04394834.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
 gi|229357547|gb|EEO22464.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
          Length = 336

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/316 (32%), Positives = 164/316 (51%), Gaps = 21/316 (6%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI H+     + + A
Sbjct: 32  AAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLIVHLGSAEQLSEWA 91

Query: 75  S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           + + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP       +++T+ 
Sbjct: 92  TDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVPAHPVLLDILKTHR 149

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLESTIV++   K  R+L
Sbjct: 150 LAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLESTIVDL-TSKPFRVL 207

Query: 193 RPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           R G +    L   +  E L+  V + +    PG + SHY P++  RLR I    RE   +
Sbjct: 208 RAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--RLRVIDDLARELATQ 262

Query: 252 FGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--DDSGASSIAFSSIPN 304
              + I  +   + +L  S+   LK    EA A+    Y  +A  D  G   I     P 
Sbjct: 263 SDELRIALLN--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDEIWLERPPQ 320

Query: 305 HGLGIAINNRLERAAA 320
               +A+++RL RAA+
Sbjct: 321 GEAWLAVHDRLRRAAS 336


>gi|146304759|ref|YP_001192075.1| translation factor SUA5 [Metallosphaera sedula DSM 5348]
 gi|145703009|gb|ABP96151.1| translation factor SUA5 [Metallosphaera sedula DSM 5348]
          Length = 350

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 161/334 (48%), Gaps = 40/334 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +RKA E + +G  +A PTETVYGL  ++ +P A  ++++ K+RP  NPLI H++D+S ++
Sbjct: 16  IRKAAEVIRSGGLVAFPTETVYGLGGNALDPKAAEKVFKAKRRPMDNPLIVHIADLSQLE 75

Query: 72  KHASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +  SVD  P  L LA+  WPGPLT +L       +   +T  L T   R+P      +LI
Sbjct: 76  E-VSVDVPPEVLDLAQRVWPGPLTFILKRNPRVPLE--TTGGLDTVAVRMPAHPIALQLI 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A PSAN + + S T  +H++   +   + ++IDGG +  G+ESTI+N+     
Sbjct: 133 RESGVPIAAPSANLATKPSPTLAEHVI-QDLDGSVDVVIDGGETFFGVESTIINLTVSPP 191

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQ------------SPGMLKSHYAPRSQV 236
           V +LRPG   +E        EL   + E   P+            +PGM   HYAP   +
Sbjct: 192 V-LLRPGPFTVE--------ELNSLLGEVVVPKEVAEGGQFNVALAPGMKYKHYAPSKPL 242

Query: 237 RLRAIHVNPREALIRF----------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
            L       +E + R                 +++   I L  S+   L   A NLF   
Sbjct: 243 YLVEKKSIFKEVVKRLRQKKKVAALCSQETCADVDEPKIILGTSEN--LYTVAKNLFKSF 300

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  D            P  G+G+AI NR ++A+A
Sbjct: 301 RQLDTLDVDLGVMEPFPERGIGLAIMNRAKKASA 334


>gi|329766034|ref|ZP_08257595.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137489|gb|EGG41764.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 346

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 161/327 (49%), Gaps = 29/327 (8%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              L  G  +A PTETVYGL  D  NP AI+++++ K RP+ NPLI H+S+   VKK+  
Sbjct: 22  VSILRKGGLVAFPTETVYGLGADGLNPKAIKKIFQAKNRPSDNPLIFHISNKKDVKKYTK 81

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
             P +   L + FWPGPLTL+L    ++ I  ++T  L T   R+P       LI + G+
Sbjct: 82  DIPATAEKLIEKFWPGPLTLILK--KSSIIPKIATGGLNTIAIRMPSHKIALSLINSLGN 139

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+  PSAN  G+ S T  KH+L   +  +I  +IDG  S IG+ESTI+++   K   ILR
Sbjct: 140 PIVAPSANLFGKPSPTLAKHVL-YDLDGKIDAVIDGRNSVIGIESTILDLTT-KTPTILR 197

Query: 194 PGGLEIETLKRAISVELEY------CVDETSTPQSPGMLKSHYAPRSQVRL--------- 238
           PG +  E LK  +  +++Y         +    +SPGM   HY+P +++ L         
Sbjct: 198 PGKISYEELKNLLK-KVKYHPSLLGKKSKLLKVKSPGMKYKHYSPNAKIILVEGNTKNTQ 256

Query: 239 RAIH-----VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           + IH        ++ LI   N         +    +  T  L   A NL+   +  DD  
Sbjct: 257 KKIHELIKKFQQQKKLIGIINNKNIKKIPFVKFKFIGTTKNL--IASNLYKSFRELDDQK 314

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I    +    LG AI NRL +AA+
Sbjct: 315 VDVIIMREVDTSNLGFAIMNRLRKAAS 341


>gi|322493293|emb|CBZ28578.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 382

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 179/371 (48%), Gaps = 58/371 (15%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+  T  + LR+A + L  G  +AIPTETVYGL  ++   +A +R+Y +K RPA++PLI
Sbjct: 3   QIIGTTPED-LRRAADALLEGKLVAIPTETVYGLGGNALIESAGKRIYAVKGRPAIDPLI 61

Query: 62  CHVSDISMVKK-------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           CHV  +  V+K         +V+ L+  +    WPGPLT+V    ++  +    T     
Sbjct: 62  CHVYSLDGVRKLWDLKWDEGAVE-LACTIGAALWPGPLTIVCK--ASPSLPGCVTGGSGY 118

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGIS 172
              R+P    T KL+E    P+A PSAN  G +S T  +H+      ++   LIIDGG S
Sbjct: 119 VGARIPNNPITLKLLEMVDVPVAAPSANTFGHVSPTTAQHVYDDLAARDPELLIIDGGQS 178

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VEL---EYCVDETSTPQ- 221
            IG+EST+  V+ +  V +LR G + +  + RAI+       VE+       D T TP  
Sbjct: 179 AIGIESTVAKVESKDLVVVLRRGRITVSMIHRAIADSYPQTRVEIRDTRIMYDSTKTPMV 238

Query: 222 SPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI-----KNI----ENAIISLN---- 268
           SPG L +HY+P     L  +      AL    +VP+     K++    E  ++  N    
Sbjct: 239 SPGQLLTHYSPSVPSSL--LTPGSLAALTAAADVPVYVHRGKDVVPLCETIVLDFNGYLS 296

Query: 269 -----------LSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI-------PNHGLGI 309
                      +S  G  +E  F +F+ ++  +   GA S+ F  I       P   L  
Sbjct: 297 RFRDTCLSYHDISPDGNPEEGCFAVFDALRATETVKGAKSLVFPLISEWPHDKPKEDLLA 356

Query: 310 AINNRLERAAA 320
           A+ +RL RAA+
Sbjct: 357 AMEDRLFRAAS 367


>gi|270158487|ref|ZP_06187144.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968]
 gi|289166681|ref|YP_003456819.1| translation initiation protein [Legionella longbeachae NSW150]
 gi|269990512|gb|EEZ96766.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968]
 gi|288859854|emb|CBJ13840.1| putative translation initiation protein [Legionella longbeachae
           NSW150]
          Length = 321

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 159/325 (48%), Gaps = 29/325 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD---IS 68
           + +A   L  G P+AIPTETVYGLA    N  AI+ ++ IK RP  +PLI HV++   + 
Sbjct: 8   IDRAIHDLQQGKPVAIPTETVYGLAAPINNEQAIKAVFAIKNRPLNHPLIIHVAENWALD 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++ K   +   +  L K FWPGPLTLV        I PL T    T   R P     ++L
Sbjct: 68  LLVK--DIPAYAQQLIKKFWPGPLTLVFH-CKQDQISPLITGGQTTVAIRCPAHPIAQEL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL  PSAN  G++S T  +H+  S   +E+  I+DGG   +G+ESTI++    +
Sbjct: 125 LKKLGVPLVAPSANPFGKVSPTTAEHVSESFYNQEL-TILDGGRCTVGIESTIIDATDPQ 183

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
             +ILR G ++ + +   I++     +   ++ + PG L SHY P+ ++     + +   
Sbjct: 184 NYQILRHGIIDEKAIAELIALP---SLRGENSLRVPGKLDSHYQPQKKL----YYFDSYN 236

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKE-----------AAFNLFNYMKIADDSGASS 296
            L  F     KN +N  +  +    G  +E            AF+L+  ++ AD S A  
Sbjct: 237 LLTHFCQ---KNGDNIYVIASKKPMGMREEYFHLLEDNPEKVAFDLYYQLRKADASNAEV 293

Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321
           I     P  G    +  R+ +A AP
Sbjct: 294 IVIELPPATGAWQGVRERILKAGAP 318


>gi|315925283|ref|ZP_07921495.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315621404|gb|EFV01373.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 346

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 168/333 (50%), Gaps = 26/333 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +  + +  G  +  PTETVYGL  ++ +P AI +++E K RPA NPLI H++D  
Sbjct: 15  AQSIARCGQIIRDGGTVVFPTETVYGLGANAFDPAAIAKIFEAKGRPADNPLIVHIADWD 74

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + +  A V   +  LA+ +WPGP+T++  L  +  +    TA L T   R P   + ++
Sbjct: 75  QISELVAEVPEKARQLAEAYWPGPMTMI--LRRSAAVPDAVTAGLGTVGIRFPSNPYARQ 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSAN SG+ S T  +H+L   + +++  I+    S +GLEST++++   
Sbjct: 133 LIVASGVPIAAPSANISGRPSPTRGRHVL-EDMLEKVDAILVADESDVGLESTVIDMTSI 191

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQ---SPGMLKSHYAPRSQVRL---- 238
               +LRPGG+ +  ++R I  V +         P+   SPGM   HYAP  ++ +    
Sbjct: 192 PPT-VLRPGGITVADIERVIGPVAVSPNTTRPVIPEEVRSPGMKYRHYAPHGRMVIARGS 250

Query: 239 ---RAIHVNPREALIRFGNVP--------IKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
              +A  +N     ++  + P        + +    +I L+L           NLF+ ++
Sbjct: 251 DGEKAAKINAAIDGLKAQDKPAVLATDETLGHYRRGMI-LSLGSQTDPAAMGHNLFDCLR 309

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             DD GA+ I    +P     +A+ NRL +AA 
Sbjct: 310 AFDDLGATHIFAEDVPVGNDTLALINRLYKAAG 342


>gi|313895787|ref|ZP_07829341.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975212|gb|EFR40673.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 355

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 168/344 (48%), Gaps = 30/344 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+S      +  A   +  G  +A PTETVYGL     +  A  R+Y  K RP+ NPLI
Sbjct: 4   KIISPVREADIAYAARMIRDGALVAFPTETVYGLGASGLDAAACARIYAAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D+SM    A ++ P + HL   F PGP+T++L       I  + T  L T   R P
Sbjct: 64  LHIADLSMAADAARTIPPAAAHLLTAFAPGPITVILP--KAAHIPDIVTGGLSTVGVRCP 121

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + LI   G P+A PSAN SG+ S T    +++  +   IP I+DGG  + G+EST
Sbjct: 122 DHDIARALIRAAGVPVAAPSANTSGRPSPTTAV-MVADDLAGRIPCILDGGACRWGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST-----PQSPGMLKSHYAPRS 234
           IV+   +  V +LRPG +  E +   +   +E  VD   T     P++PGM   HYAPR+
Sbjct: 181 IVDCTEDGVVTVLRPGAVTREMIAAELP-HMEVRVDPALTAADAVPRAPGMKYRHYAPRA 239

Query: 235 ------------QVRLRAIHVNPREALIRFGNVPIKNIENAIISL----NLSKTG-KLKE 277
                          LRA  +  R    + G +  +    A+  +     +   G +  +
Sbjct: 240 PLAVYTGAPDAVAAALRAEILRQRAEGTQIGLIAFRETCAALTGIISPAYVYACGVRGDD 299

Query: 278 AAFN--LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           AA+   L++ ++  D++ A ++       HGLG+A+ NRL +A+
Sbjct: 300 AAYANCLYDALRRFDNTDAGALLAEGTDEHGLGLAVMNRLRKAS 343


>gi|302872090|ref|YP_003840726.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574949|gb|ADL42740.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 348

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 163/334 (48%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S  
Sbjct: 12  DYEKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISSK 71

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M++  A +    ++ L + FWPGPLT+VL       +    TA L T   R+P      
Sbjct: 72  EMLEMCAEITDEKVYVLIERFWPGPLTIVLP--KKNVVADNVTAGLSTVGVRMPANKIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN SG+ S T  KH++   + K + +IIDGG    GLEST+V++  
Sbjct: 130 ELIRLSGVPVAAPSANVSGKPSPTEAKHVIEDLMNK-VDVIIDGGKCSFGLESTVVDLSG 188

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRAI 241
            + V ILRPG +    LK  + ++E    V E    S P+SPGM   HYAP +++ +   
Sbjct: 189 GEAV-ILRPGAISYYALKEVLGNIEYSKAVVEGLSGSVPRSPGMKYKHYAPDAKLIIVKG 247

Query: 242 HVNPREALIRF--GNVPIKNIENAIISL-----NLSKTGKL--------KEAAFNLFNYM 286
            ++ R   I      + +K     I+       N     KL        KE   NLF+ +
Sbjct: 248 RIDKRIDKINEMKKKLELKGYRVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSLL 307

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  +  G   I       +   +A+ NRL +AAA
Sbjct: 308 RKFNQLGVDYILCEWGEFNLEFLALENRLYKAAA 341


>gi|254225478|ref|ZP_04919088.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621948|gb|EAZ50272.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 329

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 172/330 (52%), Gaps = 22/330 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 12  QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 70

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RV
Sbjct: 71  IVHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRV 128

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLES
Sbjct: 129 PAHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLES 187

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K  R+LR G +    L   +  E ++  V + +    PG + SHY P++  R
Sbjct: 188 TIVDL-TSKPFRVLRAGPITASELSAVLGQEVMQPQVHQVAV---PGNVDSHYQPKT--R 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK----EA-AFNLFNYMKIA--D 290
           LR I    RE   +   + I  +   + +L  S+   LK    EA A+    Y  +A  D
Sbjct: 242 LRVIDDLARELATQSDELRIALLH--LSALQASEQRLLKPMPQEAKAYGQALYRSLAEVD 299

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I     P     +A+++RL RAA+
Sbjct: 300 KWGVDEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|330999106|ref|ZP_08322827.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329575495|gb|EGG57034.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 334

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 23/329 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KA + L+AG  +AIPTETVYGLA D+ N  A++ +Y  K RPA +PLI HV+    + 
Sbjct: 5   LEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASAEALP 64

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-----GFTK 125
             A   P     L + FWPGPLT+VL    +       T    T   R P         K
Sbjct: 65  YWAREIPEDAKKLTEAFWPGPLTIVLK--RSAHAKDFVTGGQDTVALRCPSHPLVHELLK 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVN 182
           +     G  LA PSAN  G+IS T  +H+   L      +   I+DGG   +G+ESTI++
Sbjct: 123 RFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTILD 182

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           +  E   RILR G +  E + + I   +E+     ++P+  G +KSHYAP   +++ +  
Sbjct: 183 LTGETP-RILREGDVSGEMISKVIGKPVEHGA-VGASPRVSGSMKSHYAPEHVLKIVSAD 240

Query: 243 VNPREA--LIR----FGNVPIKNIEN--AIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
             P E   L R    F  +  + I    + ++  +      KE   NL+ ++   D  G 
Sbjct: 241 DLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRDGG 300

Query: 295 SSIAFSSIPN-HGLGIAINNRLERAAAPR 322
             I F+  P        + +RL RAAA R
Sbjct: 301 DVI-FAVEPELTDSSAGVLDRLTRAAAER 328


>gi|303256757|ref|ZP_07342771.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium
           1_1_47]
 gi|302860248|gb|EFL83325.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium
           1_1_47]
          Length = 334

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 157/329 (47%), Gaps = 23/329 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KA + L+AG  +AIPTETVYGLA D+ N  A++ +Y  K RPA +PLI HV+    + 
Sbjct: 5   LEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASAKALP 64

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-----GFTK 125
             A   P     L + FWPGPLT+VL    +       T    T   R P         K
Sbjct: 65  YWAREIPEDAKKLTEAFWPGPLTIVLK--RSAHAKDFVTGGQDTVALRCPSHPLAHELLK 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVN 182
           +     G  LA PSAN  G+IS T  +H+   L      +   I+DGG   +G+ESTI++
Sbjct: 123 RFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTILD 182

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           +  E   RILR G +  E + + I   +E+     ++P+  G +KSHYAP   +++ +  
Sbjct: 183 LTGETP-RILREGDVSGEMISKVIGKPVEHGA-VGASPRVSGSMKSHYAPEHVLKIVSAD 240

Query: 243 VNPREA--LIR----FGNVPIKNIEN--AIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
             P E   L R    F  +  + I    + ++  +      KE   NL+ ++   D  G 
Sbjct: 241 DLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRDGG 300

Query: 295 SSIAFSSIPN-HGLGIAINNRLERAAAPR 322
             I F+  P        + +RL RAAA R
Sbjct: 301 DVI-FAVEPELTDSSAGVLDRLTRAAAER 328


>gi|170761511|ref|YP_001785471.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408500|gb|ACA56911.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 351

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 175/338 (51%), Gaps = 32/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + KA + L  G  +  PTETVYGL  ++ +  A++++++ K RP  NPLI H+S +
Sbjct: 14  DEDVISKAGDTLRRGGLVVFPTETVYGLGANALDKNAVKKIFKAKGRPQDNPLIVHISKM 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124
             ++K     P ++  L   FWPGP+T++   L   DI P  T A L +   R+P     
Sbjct: 74  KDIEKLVEEIPSVAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E LK   S + ++  +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 INPPC-ILRPGGITLEMLKEVDSNIYIDPAIMEKPDKELKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282
              +N              +A  + G +   + I+N     ++S+   K   L   A NL
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LNTIAHNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344


>gi|261210756|ref|ZP_05925048.1| YrdC family protein [Vibrio sp. RC341]
 gi|260840241|gb|EEX66821.1| YrdC family protein [Vibrio sp. RC341]
          Length = 320

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 169/329 (51%), Gaps = 23/329 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 5   QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 63

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A+ +   +  LA+ FWPGPLT++L       + P+ T  L T   RVP
Sbjct: 64  VHLGSAEQLSEWATDIADEAYQLAQAFWPGPLTMLLP--KAEHVSPVVTGGLDTIGIRVP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 ++++ +   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 122 AHPVLLEILKAHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           IV++ C K  R+LR G +    L   +  E L+  V   +    PG + SHY P++  RL
Sbjct: 181 IVDLTC-KPFRVLRAGPITASELSAVLGQEVLQPQVHHVAV---PGNVDSHYQPKT--RL 234

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK-----EAAFNLFNYMKIA--DD 291
           R I     E L+  GN+ I  +   +  L  S+   LK       A+    Y  +A  D 
Sbjct: 235 RVIDAIDNE-LVTAGNIKIALLH--LSELQASEQRLLKPMPQDAKAYGQALYRSLAEVDK 291

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   I     P     +A+++RL RAA+
Sbjct: 292 WGVDEIWLERPPQGETWLAVHDRLRRAAS 320


>gi|71010426|ref|XP_758389.1| hypothetical protein UM02242.1 [Ustilago maydis 521]
 gi|46098131|gb|EAK83364.1| hypothetical protein UM02242.1 [Ustilago maydis 521]
          Length = 516

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 137/266 (51%), Gaps = 37/266 (13%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N+L KA   L A   +A P+ETVYGL  ++ + +A  ++Y  KKRPA NPLI HVSD+ M
Sbjct: 61  NSLDKAASHLRASQLVAFPSETVYGLGANALSQSAASKIYAAKKRPADNPLIVHVSDLEM 120

Query: 70  VK----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-F 123
           +     +  ++      L K FWPG LTL+  + +     P + T    +   R+P    
Sbjct: 121 LDTLLPQSYTMSQAYSDLIKAFWPGALTLLFPVDTQRPAVPTVVTCGHPSVAVRMPSHPI 180

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHIL-----------SSSICKEIP-----LII 167
            + LI   G P+A PSAN SG+ S T   H+L           SS+   + P      I+
Sbjct: 181 ARALIAISGLPMAGPSANASGRPSPTTAGHVLRDLGGQLDAESSSADASQAPKGRLRYIL 240

Query: 168 DGGISKIGLESTIVN-VQCEKKVRILRPGGLEIETLK--------------RAISVELEY 212
           DGG  ++G+EST+++ +    +VR+LRPGG+ +E +               R    ++E 
Sbjct: 241 DGGACQVGVESTVIDGITAADEVRVLRPGGVTVEQIASVLDKAGLANKVKLRVYGKDMER 300

Query: 213 CVDETSTPQSPGMLKSHYAPRSQVRL 238
            V++ S P +PGM   HY+P ++V L
Sbjct: 301 SVEQESNPTTPGMKYRHYSPTARVVL 326


>gi|264680710|ref|YP_003280620.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2]
 gi|262211226|gb|ACY35324.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2]
          Length = 332

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 167/324 (51%), Gaps = 33/324 (10%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  + +PTETVYGLA DS N  A+ +++  K RPA +PLI HV+D + + ++A   P
Sbjct: 18  LQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIVHVADATAITRYAKEVP 77

Query: 79  -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----CGFTKKLIETYGH 133
             +  L   FWPGPLTL+L  L        ST    +   R P         K  +    
Sbjct: 78  VFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPSHPVAHAVLKACQQLDP 135

Query: 134 P---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           P   ++ PSAN+ G++S T  +H+ ++   +E+ L++DGG  ++G+ESTIV+  C + V 
Sbjct: 136 PVWGVSAPSANKFGRVSPTTAEHV-ATEFGEEL-LVLDGGACEVGIESTIVD--CTRGVP 191

Query: 191 I-LRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           + LRPG +  + + RA  +    + E   D   TP++ G L +HYAP ++VRL       
Sbjct: 192 VLLRPGAVTRDDIARACGLRPLSKEELTAD---TPRASGTLLAHYAPNAKVRLMDAG-QL 247

Query: 246 REALIRFG----NVPIK-----NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           + AL   G    N+ I      N+  A + L    + + ++ A  LF  ++  DD GA  
Sbjct: 248 QSALDILGKDGRNIAIYHRSPLNVTTAQLLLR-RMSDEPRDVARELFGMLRNFDDWGAKL 306

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I   + P+      + +RL+RAAA
Sbjct: 307 IWIETPPDTADWEGVRDRLQRAAA 330


>gi|296449033|ref|ZP_06890823.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08]
 gi|296879856|ref|ZP_06903829.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07]
 gi|296262126|gb|EFH08931.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08]
 gi|296429145|gb|EFH15019.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07]
          Length = 353

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 167/329 (50%), Gaps = 34/329 (10%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            + L  G  +  PTETVYGL  ++ +  A++++YE K RP+ NPLI H+ +   V   A 
Sbjct: 29  AKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDLAK 88

Query: 76  --VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETY 131
              D   L + KL WPGP+T++L+     DI P  T+  L T   R+P     + +I+  
Sbjct: 89  DISDKAKLVIEKL-WPGPITIILN---KKDIIPYKTSGGLDTVAIRMPSNIIARAIIKEA 144

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSAN SG+ S T  KH+    +   +  I+ GG S  GLEST++++  E+   I
Sbjct: 145 GIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDL-TEETPMI 202

Query: 192 LRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL-------RA 240
           LRPG +  E L+  +  V+L+  +   ++    ++PGM   HY+P + V +        A
Sbjct: 203 LRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKRENVA 262

Query: 241 IHVNP-----REALIRFGNV-PIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           I +N      RE  ++ G +   KN E     +I L  S    L+E A NLF+ +   D 
Sbjct: 263 IKINDMIKSNREKGLKTGVMCTSKNREFYDGEVIDLGNS----LEEVASNLFDALIEMDK 318

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                I     P  G+G AI NRL ++A 
Sbjct: 319 KSVDVIYSEEFPKTGVGQAIMNRLLKSAG 347


>gi|222098797|ref|YP_002532855.1| sua5/ycio/yrdc/ywlc family protein [Bacillus cereus Q1]
 gi|221242856|gb|ACM15566.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus Q1]
          Length = 298

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 154/296 (52%), Gaps = 21/296 (7%)

Query: 41  NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLL 99
           N  AI +++E K RP+ NPLI H+   S +      + P++  L + FWPGPLT++L   
Sbjct: 2   NDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILP-- 59

Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
               I    TA L T   R+P       LIE    P+A PSANRSG+ S T   H+    
Sbjct: 60  RKEGISEKVTAGLHTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVYED- 118

Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAI-SVELEYCV-D 215
           + ++I  I+DGG + +G+EST+++  C   V  ILRPGG+  E L+  I +V L+  + D
Sbjct: 119 LNEKIAGIVDGGATGVGVESTVID--CTSAVPTILRPGGITKEQLEAVIGTVSLDPALKD 176

Query: 216 ETSTPQSPGMLKSHYAPR--------SQVRLRAIHVNPREALIRFGNVPIK---NIENAI 264
           E   P+SPGM  +HYAP+        S+  ++ +    +E   + G +  +   +I NA 
Sbjct: 177 EKEKPKSPGMKYTHYAPKAPLSIVEGSREFIQRLVDEKKEEGFKVGVLTTEEYHHIYNAD 236

Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           + L+      L   A  L++ ++  D S    I   S PN G+G AI NRL +AA 
Sbjct: 237 VVLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAG 292


>gi|126701105|ref|YP_001090002.1| hypothetical protein CD3482 [Clostridium difficile 630]
 gi|260685001|ref|YP_003216286.1| hypothetical protein CD196_3272 [Clostridium difficile CD196]
 gi|260688659|ref|YP_003219793.1| hypothetical protein CDR20291_3318 [Clostridium difficile R20291]
 gi|260211164|emb|CBA66618.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260214676|emb|CBE07311.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 353

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 34/329 (10%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            + L  G  +  PTETVYGL  ++ +  A++++YE K RP+ NPLI H+ +   V   A 
Sbjct: 29  AKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDLAK 88

Query: 76  --VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETY 131
              D   L + KL WPGP+T++L+     DI P  T+  L T   R+P     + +I+  
Sbjct: 89  DISDKAKLVIEKL-WPGPITIILN---KKDIIPYKTSGGLDTVAIRMPSNVIARAIIKEA 144

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSAN SG+ S T  KH+    +   +  I+ GG S  GLEST++++  E+   I
Sbjct: 145 GIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDL-TEETPMI 202

Query: 192 LRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL-------RA 240
           LRPG +  E L+  +  V+L+  +   ++    ++PGM   HY+P + V +        A
Sbjct: 203 LRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKRENVA 262

Query: 241 IHVNP-----REALIRFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
             +N      R+  ++ G + I       +  +I L  S    L+E A NLF+ +   D 
Sbjct: 263 TKINDMIKSNRDKGLKTGVMCISRNREFYDGEVIDLGNS----LEEVASNLFDALIEMDK 318

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   I     P  G+G AI NRL ++A 
Sbjct: 319 KGVDVIYSEEFPKTGVGQAIMNRLLKSAG 347


>gi|194335648|ref|YP_002017442.1| Sua5/YciO/YrdC/YwlC family protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308125|gb|ACF42825.1| Sua5/YciO/YrdC/YwlC family protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 317

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 165/332 (49%), Gaps = 29/332 (8%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TDS    +A   L++G  +A PTETVYGL     +P AI +L+  K RP+ NPL
Sbjct: 1   MQTI-LTDSP--EEAAAILNSGGVVAFPTETVYGLGAGICHPEAILQLFRAKGRPSDNPL 57

Query: 61  ICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKT 114
           I H+  I  + +     HA    L  H    F+PGPLTLVL   S+    P S TA L+T
Sbjct: 58  IVHLGSIDQLDEVAEALHADARALIEH----FFPGPLTLVLQKKSSV---PFSVTAGLET 110

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R P     ++ +   G P+A PSANRSG  S T+ + ++   +   I  ++ G  S 
Sbjct: 111 VGVRCPSNPVAQEFLRLCGCPVAAPSANRSGLPSATSWEAVM-EDLEGRIECVLRGRPST 169

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKS 228
           IGLESTIV     K + +LR G + +E L+  +    E  V+  +     +P+ PG+   
Sbjct: 170 IGLESTIVECSGAKPL-LLRAGAITLEQLREVVP---EITVNAVTNKPEESPKCPGLKYP 225

Query: 229 HYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           HYAP++ + L +   +P        ++ +      +    +  T  L+E    LF + ++
Sbjct: 226 HYAPKASIILWSGEKSPVADSPSSASIGLSAPPEGVTLCKVCST--LEEYGRELFGFFRL 283

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D  G   I      N GLG AI +RL RAAA
Sbjct: 284 CDAEGIGVIYCELPSNEGLGRAIRDRLLRAAA 315


>gi|254977106|ref|ZP_05273578.1| hypothetical protein CdifQC_17418 [Clostridium difficile QCD-66c26]
 gi|255094434|ref|ZP_05323912.1| hypothetical protein CdifC_17521 [Clostridium difficile CIP 107932]
 gi|255102691|ref|ZP_05331668.1| hypothetical protein CdifQCD-6_17911 [Clostridium difficile
           QCD-63q42]
 gi|255308512|ref|ZP_05352683.1| hypothetical protein CdifA_18121 [Clostridium difficile ATCC 43255]
 gi|255316186|ref|ZP_05357769.1| hypothetical protein CdifQCD-7_17609 [Clostridium difficile
           QCD-76w55]
 gi|255518847|ref|ZP_05386523.1| hypothetical protein CdifQCD-_17148 [Clostridium difficile
           QCD-97b34]
 gi|255652026|ref|ZP_05398928.1| hypothetical protein CdifQCD_17710 [Clostridium difficile
           QCD-37x79]
 gi|306521768|ref|ZP_07408115.1| hypothetical protein CdifQ_20080 [Clostridium difficile QCD-32g58]
 gi|328887821|emb|CAJ70385.2| putative RNA-binding protein [Clostridium difficile]
          Length = 346

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 34/329 (10%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            + L  G  +  PTETVYGL  ++ +  A++++YE K RP+ NPLI H+ +   V   A 
Sbjct: 22  AKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDLAK 81

Query: 76  --VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETY 131
              D   L + KL WPGP+T++L+     DI P  T+  L T   R+P     + +I+  
Sbjct: 82  DISDKAKLVIEKL-WPGPITIILN---KKDIIPYKTSGGLDTVAIRMPSNVIARAIIKEA 137

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSAN SG+ S T  KH+    +   +  I+ GG S  GLEST++++  E+   I
Sbjct: 138 GIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDL-TEETPMI 195

Query: 192 LRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL-------RA 240
           LRPG +  E L+  +  V+L+  +   ++    ++PGM   HY+P + V +        A
Sbjct: 196 LRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKRENVA 255

Query: 241 IHVNP-----REALIRFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
             +N      R+  ++ G + I       +  +I L  S    L+E A NLF+ +   D 
Sbjct: 256 TKINDMIKSNRDKGLKTGVMCISRNREFYDGEVIDLGNS----LEEVASNLFDALIEMDK 311

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   I     P  G+G AI NRL ++A 
Sbjct: 312 KGVDVIYSEEFPKTGVGQAIMNRLLKSAG 340


>gi|118594847|ref|ZP_01552194.1| Putative translation factor [Methylophilales bacterium HTCC2181]
 gi|118440625|gb|EAV47252.1| Putative translation factor [Methylophilales bacterium HTCC2181]
          Length = 324

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 174/330 (52%), Gaps = 25/330 (7%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++  TDS+ + +A   L  G  + +PTETVYGLA D+ + +AI+ ++ +KKRP  +PLI 
Sbjct: 5   LLKATDSDCINQAVTLLKDGKLVGLPTETVYGLAADATHTSAIQEIFRVKKRPPNHPLIL 64

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H+ D+S + + A ++  ++  LAK F PG L+++L       +    T      C R+P 
Sbjct: 65  HLPDLSDLSQWAINIPDITYALAKQFMPGSLSVLLH--KNPSVSNAITGGSNKICIRIPH 122

Query: 122 GFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             T  K+IE  G P+  PSAN  G+IS T+ +H++   +  EI  ++DGG  ++G+ESTI
Sbjct: 123 HETTLKIIERLGSPIVAPSANIFGRISPTSAEHVM-QDLFGEIDAVVDGGECRVGIESTI 181

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV---- 236
           V++       +LRPGG+ +  L++A+  ++ +  D  +T  S G L +HY P +++    
Sbjct: 182 VDLTTPIPT-LLRPGGVNLFALEKALHSKI-FIPDSVNTSIS-GNLVNHYQPTTKLTPIH 238

Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                  +L     +     + F ++    I   ++ +++ K  +L       +  +++ 
Sbjct: 239 KEDIMTHQLMGASDSTTTIFLLFEDLHELQINKYLMPMDVHKYSQL------FYGVLRVL 292

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           D +G   I     P     +AIN+R+ +A+
Sbjct: 293 DKAGFKEIFIQIPPKSPEWLAINDRILKAS 322


>gi|294792024|ref|ZP_06757172.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 6_1_27]
 gi|294457254|gb|EFG25616.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 6_1_27]
          Length = 347

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 39/323 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83
           ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI HV +   +K   + +   +  L
Sbjct: 31  VSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLILHVPNSESIKPLVTEISATAQAL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP----CGFTKKLIETYGHPLAIP 138
              FWPGPLT+    L  +D+ P  +T  L     R P    C   + L+E  G P+A P
Sbjct: 91  MDAFWPGPLTIT---LPKSDLVPDRATGGLTRVALRCPDHEAC---RVLLERAGIPIAAP 144

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ S T  + +  + +   I  I+D G   IG+EST+V V  + KV ILRPGG+ 
Sbjct: 145 SANISGRPSPTTAEDVY-NDMNGRISYILDAGPCTIGVESTVVEVH-DDKVIILRPGGIT 202

Query: 199 IETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
              L+R +S  +EY    V+ T+TP++PGM  +HYAP +   +  +  NP +    F  +
Sbjct: 203 KAQLERVVST-VEYDTALVNATTTPKAPGMKYTHYAPDAP--MTVVVGNPEDIASMFKAL 259

Query: 256 PIKNIENAIISL------NLSKT---------GKLKEA---AFNLFNYMKIADDSGASSI 297
             + IE  I  L      NL K          G  ++A     + +  +   +++  + I
Sbjct: 260 S-EGIEGPIGCLVSHETYNLIKEDGRFMCHCFGHHRDALALGHDFYKSLLHFNENHVTLI 318

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
               + + G G+AI NR+E+A++
Sbjct: 319 LAEGVDDDGFGVAIMNRMEKASS 341


>gi|71756077|ref|XP_828953.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834339|gb|EAN79841.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 379

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 180/372 (48%), Gaps = 58/372 (15%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I D + L  A   L  G  +A+PTETVYGL  ++ +  A+++++E+K RP+ +PLICHV 
Sbjct: 4   IIDVSELDYAAHSLTRGGLVALPTETVYGLGGNALDERAVQQIFEVKGRPSTDPLICHVP 63

Query: 66  DI--SMVKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           DI  ++    ++ DP +L +AK      WPGPLT+V    + + + P  T N      R+
Sbjct: 64  DIQRAVGLWDSNADPAALEVAKWIGDAIWPGPLTIVFR--ANSVLPPSVTGNSGYVGVRI 121

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIGL 176
           P      +L++    P+A PSAN  G +S T  +H+L   + +  P  L+IDGG S IG+
Sbjct: 122 PNHPIALQLLQLVNFPVAAPSANTFGHVSPTTAEHVL-RDLGERCPSLLVIDGGHSNIGI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTP-------QSPGML 226
           EST++ V    KV ILR G + +  L++ I  +    +   D  S P         PG L
Sbjct: 181 ESTVLKVASATKVEILRRGKVSLADLQQVIWKKFACHITVRDTRSCPGTVDMAMDGPGQL 240

Query: 227 KSHYAPRSQVRLRA-------IHVNP---------------------REALIRFGNVPIK 258
            +HY+P     +         +H N                      +  +I FG +  +
Sbjct: 241 LTHYSPSVLSGMLTPKSTNCEVHQNELDKAVVELPSTPPLTGGVPLNQTVIIDFGGLLQR 300

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGIA 310
                +   +LS  G++++A F +F  ++ ++  SGA  + F   S  P    +  L  A
Sbjct: 301 FQRVCLAYRDLSAEGEVQQACFAVFEALRWSETVSGAGVVLFPLISEWPCKTGDEELLAA 360

Query: 311 INNRLERAAAPR 322
           + +RL RAA+ +
Sbjct: 361 VEDRLFRAASGK 372


>gi|262045802|ref|ZP_06018766.1| Sua5 family translation factor [Lactobacillus crispatus MV-3A-US]
 gi|260573761|gb|EEX30317.1| Sua5 family translation factor [Lactobacillus crispatus MV-3A-US]
          Length = 333

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 160/329 (48%), Gaps = 20/329 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + +  A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPLI  VS
Sbjct: 5   IFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M+ K+A   P  +  L K FWPGPLTL+L  +    +    T  L T  FR P    
Sbjct: 65  DEEMMAKYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G+P+  PSAN S + S T  +H+    +  +I  IID G +++GLESTI+++
Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   V    
Sbjct: 183 SVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEPV---V 238

Query: 241 IHVNPRE-ALIRFGN-VPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDS 292
           +  +P + A I F   + +  +   +  +NL +  K      L +A  NLF  ++  DD 
Sbjct: 239 VVDDPADFAKIDFNEKIGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRYFDDQ 298

Query: 293 GA-SSIAFSSIPNHGLGIAINNRLERAAA 320
               +I           +A  NRL +AA 
Sbjct: 299 DDIETIYVQGFHEGEESLAYMNRLNKAAG 327


>gi|168182249|ref|ZP_02616913.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Bf]
 gi|182674619|gb|EDT86580.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Bf]
          Length = 351

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 174/338 (51%), Gaps = 32/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + KA + L  G  +  PTETVYGL  ++ +  A++++++ K RP  NPLI H+S +
Sbjct: 14  DEHVISKAGDILRQGGLVVFPTETVYGLGANALDKNAVKKIFKAKGRPQDNPLIVHISKM 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124
             +++     P ++  L   FWPGP+T++   L   DI P  T A L +   R+P     
Sbjct: 74  KDIERLVEKIPSVAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E LK   S + ++  +    D+   P++PGM   HYAP + +++ 
Sbjct: 190 INPPC-ILRPGGITLEMLKEVDSNIYIDSAIMKKPDKELKPKAPGMKYRHYAPNAPLKII 248

Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282
              +N              +A  + G +   + I+N     ++S+   K   L   A NL
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LDTIAHNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344


>gi|150388176|ref|YP_001318225.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948038|gb|ABR46566.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 356

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 168/332 (50%), Gaps = 30/332 (9%)

Query: 15  AC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           AC E +  G  +A PTETVYGL  ++ +  AI +++  K RP+ NPLI HV+    V   
Sbjct: 23  ACGEMIREGKTVAFPTETVYGLGANALDSKAINKIFVAKGRPSDNPLIVHVAHRVEVDAL 82

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
             V P  +  L   FWPGPLTLV++   +  I    +A L T   R+P     + LIE  
Sbjct: 83  VRVIPEKAKKLMAHFWPGPLTLVME--KSHGIPGEISAGLSTVAIRMPVHPIARTLIEKA 140

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSAN SG+ S T   H++   +  ++  II GG   +G+EST+++V  E+   I
Sbjct: 141 GVPVAAPSANTSGKPSPTRAAHVI-QDLRGKVDAIIAGGPCDVGVESTVLDV-TEETPMI 198

Query: 192 LRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQV----RLRAIH 242
           LRPGG+  E L+      A+   L +  +    P+SPGM  +HYAP+++V     + A  
Sbjct: 199 LRPGGVTKEMLEAVIGEVALDPGLYHRGEMKDVPRSPGMKYTHYAPKAKVIIIEGVEAAV 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA--------------AFNLFNYMKI 288
           V     ++ +      ++   +   +L+   +++E               A NLF  ++ 
Sbjct: 259 VRKIREMVAYYKEKGLSVGVIVTDESLAYYDQVEECCVKSMGSRQNPETIANNLFRVLRE 318

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D++  + I   ++   G+G A+ NRL +AA 
Sbjct: 319 FDETNVAIILSEAVEEVGIGQAVMNRLMKAAG 350


>gi|255657436|ref|ZP_05402845.1| hypothetical protein CdifQCD-2_17451 [Clostridium difficile
           QCD-23m63]
          Length = 346

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/329 (33%), Positives = 167/329 (50%), Gaps = 34/329 (10%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            + L  G  +  PTETVYGL  ++ +  A++++YE K RP+ NPLI H+ +   V   A 
Sbjct: 22  AKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEEVYDLAK 81

Query: 76  --VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETY 131
              D   L + KL WPGP+T++L+     DI P  T+  L T   R+P     + +I+  
Sbjct: 82  DISDKAKLVIEKL-WPGPITIILN---KKDIIPYKTSGGLDTVAIRMPSNIIARAIIKEA 137

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSAN SG+ S T  KH+    +   +  I+ GG S  GLEST++++  E+   I
Sbjct: 138 GIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDL-TEETPMI 195

Query: 192 LRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL-------RA 240
           LRPG +  E L+  +  V+L+  +   ++    ++PGM   HY+P + V +        A
Sbjct: 196 LRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKRENVA 255

Query: 241 IHVNP-----REALIRFGNV-PIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           I +N      RE  ++ G +   KN E     +I L  S    L+E A NLF+ +   D 
Sbjct: 256 IKINDMIKSNREKGLKTGVMCTSKNREFYDGEVIDLGNS----LEEVASNLFDALIEMDK 311

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                I     P  G+G AI NRL ++A 
Sbjct: 312 KSVDVIYSEEFPKTGVGQAIMNRLLKSAG 340


>gi|227877273|ref|ZP_03995346.1| Sua5 family translation factor [Lactobacillus crispatus JV-V01]
 gi|227863129|gb|EEJ70575.1| Sua5 family translation factor [Lactobacillus crispatus JV-V01]
          Length = 339

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 160/334 (47%), Gaps = 20/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I   + +  A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 6   MMETKIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 65

Query: 61  ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M+ K+A   P  +  L K FWPGPLTL+L  +    +    T  L T  FR 
Sbjct: 66  IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRC 124

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IID G +++GLES
Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   
Sbjct: 184 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 242

Query: 236 VRLRAIHVNPRE-ALIRFGN-VPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287
           V    +  +P + A I F     +  +   +  +NL +  K      L +A  NLF  ++
Sbjct: 243 V---VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLR 299

Query: 288 IADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
             DD     +I           +A  NRL +AA 
Sbjct: 300 YFDDQDDIETIYVQGFHEGEESLAYMNRLNKAAG 333


>gi|293381671|ref|ZP_06627652.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus 214-1]
 gi|290921718|gb|EFD98739.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus 214-1]
          Length = 334

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 160/334 (47%), Gaps = 20/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I   + +  A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 1   MMETKIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M+ K+A   P  +  L K FWPGPLTL+L  +    +    T  L T  FR 
Sbjct: 61  IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRC 119

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IID G +++GLES
Sbjct: 120 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   
Sbjct: 179 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 237

Query: 236 VRLRAIHVNPRE-ALIRFGN-VPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMK 287
           V    +  +P + A I F     +  +   +  +NL +  K      L +A  NLF  ++
Sbjct: 238 V---VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLR 294

Query: 288 IADDSGA-SSIAFSSIPNHGLGIAINNRLERAAA 320
             DD     +I           +A  NRL +AA 
Sbjct: 295 YFDDQDDIETIYVQGFHEGEESLAYMNRLNKAAG 328


>gi|146296540|ref|YP_001180311.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410116|gb|ABP67120.1| translation factor SUA5 [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 348

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 165/337 (48%), Gaps = 31/337 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N L KA + L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S  
Sbjct: 12  DYNKLSKAAQILKEGGLVAFPTETVYGLGANALLKEAVDKIFVAKGRPQDNPLIVHISSK 71

Query: 68  SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M+   A V D     L + FWPGPLT+VL       I    TA L T   R+P      
Sbjct: 72  KMLDMCAKVTDERVYKLIEKFWPGPLTIVLP--KKECIPDNVTAGLNTVGIRMPNNKIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LIE  G P+A PSAN SG+ S T  +H++     K + +IIDGG    GLEST++++  
Sbjct: 130 ELIELAGVPVAAPSANVSGKPSPTEAQHVIEDLFGK-VDVIIDGGKCSFGLESTVIDLSS 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELEY-----CVDETSTPQSPGMLKSHYAPRSQV---- 236
            K   ILRPG +    LK  +  ++EY       +  S P++PGM   HYAP +++    
Sbjct: 189 SKP-YILRPGAVPFSILKEILE-DIEYDPSILAGNILSVPKAPGMKYKHYAPDAKMIVVK 246

Query: 237 -----RLRAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFN 284
                R+  I+   ++  I+   V I        N E+    + L      KE   NLF+
Sbjct: 247 GKIHKRIDKINEIKKDLEIKGYKVGILCFYETSHNFESQ-YKIVLGSMFDYKECGKNLFS 305

Query: 285 YMKIADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320
            ++  +  G   I        G+  +A+ NRL +A+A
Sbjct: 306 ALRRFNHLGVDYI-ICEWGEFGIEYLALENRLFKASA 341


>gi|328773398|gb|EGF83435.1| hypothetical protein BATDEDRAFT_4477 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 324

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 166/323 (51%), Gaps = 34/323 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK-----KHASVDPL 79
           +A PTETVYGLA ++ +  A++ ++  K+RP+ NPLI HVS I M++         +  +
Sbjct: 2   VAFPTETVYGLAANALDAAAVQGIFSAKQRPSDNPLIVHVSSIQMLESLLPPSLPHLPSI 61

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
            + L   FWPGPLT++L       I  L TA+  T   R+P       LI   G PLA P
Sbjct: 62  YVALINKFWPGPLTILLP--KGPHIPNLVTASHDTVAVRMPSHPVALGLIAQCGFPLAAP 119

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ S T  +H+  + +   IP+I+DGG+ + GLEST+V+        ILRPGG+ 
Sbjct: 120 SANTSGRPSPTLAEHVF-ADLHSRIPMIVDGGMCRSGLESTVVDA-LRNPPAILRPGGIT 177

Query: 199 IETLK-----RAISVELEYCVDE--TSTPQSPGMLKSHYAPRSQVRLRAIHVNP------ 245
            E ++       +++   + VD+     P +PGM   HY P ++V L  I  N       
Sbjct: 178 FEQIRLIAGFENVTIYNTHFVDKGLEEAPTTPGMKYRHYTPNAEVVLIEIGANAIKLDET 237

Query: 246 --------REALIRFGNVPIK-NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
                   R  ++R G+   K ++    + ++L  T   +E A NLF  ++  +    + 
Sbjct: 238 NCVDPECTRVGVLRAGSTIDKYDVCKEAVEIHLGATA--EEIARNLFKGLRDLEQHYCAC 295

Query: 297 IAFSSIPNHGLGIAINNRLERAA 319
           I    IP+ G G+A+ NR+ +A+
Sbjct: 296 IIVEGIPDVGHGLAVMNRIRKAS 318


>gi|67468340|ref|XP_650214.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56466800|gb|EAL44828.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 357

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 162/332 (48%), Gaps = 29/332 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  +  A + +  G  +  PTETVYGL  D   P AI +++++K RP  NPLICH+SDI
Sbjct: 28  DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87

Query: 68  SMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            M+ K   H S D  +  L K FWPG LT++        +    TA L T   R+P    
Sbjct: 88  EMLNKLAAHVSED--AHKLIKRFWPGALTIIFP--RNEAVPNEVTAGLNTVGVRMPSHPI 143

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             + I+  G P+A PSAN S + S T  +H +   +   I +IIDGG   IG+EST++ +
Sbjct: 144 AYEFIKQCGTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGSCDIGVESTVLML 202

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRLR 239
             +    ILRPGG+ +E L+  I     Y +       + P +PGM   HYAP   V   
Sbjct: 203 GNDHPT-ILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAP--SVDTI 259

Query: 240 AIHVNPR-EALIRFGNVPIK----------NIENAIISLNLSKTG-KLKEAAFNLFNYMK 287
            I  + R E LI   +  +K          ++E+   +L +  TG K K  A  LF  M+
Sbjct: 260 VITGDKRSEKLIELCHEYMKSGKKVGVVCWSLESLDCTLFMKVTGDKYKGMAHALFTDMR 319

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             D      I    +     G+A+ NR ++AA
Sbjct: 320 DLDGK-VDIILIEGVQEIKEGLAVMNRAKKAA 350


>gi|45190306|ref|NP_984560.1| AEL300Cp [Ashbya gossypii ATCC 10895]
 gi|44983202|gb|AAS52384.1| AEL300Cp [Ashbya gossypii ATCC 10895]
          Length = 418

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 168/364 (46%), Gaps = 52/364 (14%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+ + L  A    D G  +A PTETVYGL   S N  ++R +Y+ K RP+ NPLI HVS 
Sbjct: 51  TEKHLLEAARLIRDDGETVAFPTETVYGLGGSSLNDASVRNIYKAKNRPSDNPLISHVSS 110

Query: 67  ISMVKKHASVD----------PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           I+ + +               P+  H L +  WPGPLT++L +   T +  L+TA   T 
Sbjct: 111 IAQLNRRIYQQDREGDVLRNIPVVYHELVRQLWPGPLTILLPINEETALSVLTTAGQPTF 170

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI     P+A PSAN S + S T  +H+    +  +IPLI+DGG  ++
Sbjct: 171 AVRIPADPVARALIALSDTPIAAPSANVSTRPSPTAAEHVY-HDLKGKIPLILDGGSCRV 229

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC-------VDETSTPQSPGMLK 227
           G+EST+++      + +LRPGG   E +      +  +C       V      ++PGM  
Sbjct: 230 GVESTVIDGLVNPPM-LLRPGGFTYEEIIELGGEQWSHCKVENRMTVGSGEKVRTPGMKY 288

Query: 228 SHYAPRSQV--------------RLRAI-----------HVNPREAL-----IRFGNVPI 257
            HY+PR+                R++ +             + R+ +     I F N  +
Sbjct: 289 KHYSPRASTVAFAPINDDLPTSERMKIVTSEIMKYMTSHGTDKRQKVGLLTSIMFPNNLL 348

Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF-SSIPNHGLGIAINNRLE 316
           ++I + +  +  S     KE   NLF  ++  D+     + F   I +   G+A+ NRL 
Sbjct: 349 ESITDEVDVVVYSLGSSGKEVQSNLFAMLRRLDEEDEVDLIFVEGISDRNEGLAVMNRLR 408

Query: 317 RAAA 320
           +AA 
Sbjct: 409 KAAG 412


>gi|313891812|ref|ZP_07825417.1| Sua5/YciO/YrdC/YwlC family protein [Dialister microaerophilus UPII
           345-E]
 gi|313119806|gb|EFR42993.1| Sua5/YciO/YrdC/YwlC family protein [Dialister microaerophilus UPII
           345-E]
          Length = 345

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 166/333 (49%), Gaps = 30/333 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ + K    +  G  +A PTETVYGL  ++ +  A +++Y+ K RP+ NPLI HV+D S
Sbjct: 14  SDLVNKLGYIIRKGGLVAFPTETVYGLGGNALSSKAAKKIYKAKGRPSDNPLIVHVADKS 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVP-CGFTK 125
            VK    +++ L   L  L+WPGPLT+V +     DI P  T+  L T   R P    T+
Sbjct: 74  QVKNFVKNINDLEHKLMDLYWPGPLTIVFE---KKDIIPYETSGGLDTVAIRCPDNNATR 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI     PLA PSAN S + S T  K +L + +   I  +ID G SKIGLESTIV V  
Sbjct: 131 ALIRAAKVPLAGPSANISTRPSPTYAKSVL-NDLDGRINAVIDNGDSKIGLESTIVAVN- 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-TPQSPGMLKSHYAPRSQVRLRAIHVN 244
           E K+ I RPG +  E L       L+  + +++  P++PGM   HYAP + + +   + N
Sbjct: 189 EGKIIIYRPGAITQEMLSELAPTSLDTALKKSNEKPKAPGMKYRHYAPSAPLEIYVGNEN 248

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKT--------------GKL---KEAAFNLFNYMK 287
             E  I    + + N  + I    +SK               GK    K  A NLF  + 
Sbjct: 249 KVEESI----LEVSNENDKIYGFFVSKETAEKLPKNSIVFCWGKRSDKKSMARNLFKGLL 304

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             +      I      N G+G+AI NRL++A+ 
Sbjct: 305 FFNSQKIDQIIGEGTDNKGIGMAIMNRLKKASG 337


>gi|167769909|ref|ZP_02441962.1| hypothetical protein ANACOL_01250 [Anaerotruncus colihominis DSM
           17241]
 gi|167667900|gb|EDS12030.1| hypothetical protein ANACOL_01250 [Anaerotruncus colihominis DSM
           17241]
          Length = 342

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 162/312 (51%), Gaps = 22/312 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           + IPTETVYGLA ++ +P A   +Y  K RP  NPLI H++ +  +       P +L+ L
Sbjct: 31  VVIPTETVYGLAANALDPAAAAAIYTAKGRPCDNPLIVHIASLDELPPLVKAVPDALYRL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
           A  FWPGP+T++L+    +D+ P  +T  L T   R+P     + LI   G PLA PSAN
Sbjct: 91  ADRFWPGPMTVILE---KSDLVPSATTGGLDTVAVRMPAHPAARALIRRAGVPLAAPSAN 147

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG  S T  +H +   +   +  I+DGG  ++GLEST++ + CE+  +ILRPG + +E 
Sbjct: 148 LSGSPSPTCARHCI-DDLDGRVDAIVDGGPCEVGLESTVLTL-CEQPPQILRPGAVTLEM 205

Query: 202 LKRAIS-VELEYCVDE----TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI-----R 251
            ++ ++ +EL   V E         SPGM   HYAP+++V L      P    +     R
Sbjct: 206 ARQVLADIELGPGVFERLPDGVRAASPGMKYKHYAPKARVILVHAARGPFANFLASRKGR 265

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
           FG + +   E A +S      G   +A   A  LF+ ++  D +G   +        G+G
Sbjct: 266 FGALCLAGDEQA-LSCPCIVYGAQDDAASQAHGLFDALRQIDRAGLPLVYARVDGAGGVG 324

Query: 309 IAINNRLERAAA 320
            A+ NRL RAA 
Sbjct: 325 QAVYNRLLRAAG 336


>gi|313673749|ref|YP_004051860.1| sua5/ycio/yrdc/ywlc family protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940505|gb|ADR19697.1| Sua5/YciO/YrdC/YwlC family protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 341

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 160/335 (47%), Gaps = 25/335 (7%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+++T+ N   AL+ A E +  G    IPTETVYG+A    N  AI++++E K RP  N
Sbjct: 8   KIITLTEENFKEALKIASEIISNGGIAVIPTETVYGIAASIYNSDAIQKIFEAKNRPMDN 67

Query: 59  PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI H+SD   +      ++  S  L + FWPGPLTL+       D     T  L T   
Sbjct: 68  PLIVHISDPKQLNDLTDEINETSRKLIQQFWPGPLTLIFKAKEGVDKK--VTGGLNTIAV 125

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P   FT KLIE  G PLA PSAN SG+ S T +  I    +  ++ +I+D GI + GL
Sbjct: 126 RMPDNAFTLKLIEMTG-PLAAPSANISGKPSGTEISDIF-EELNGKVDVIVDEGIVRCGL 183

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           EST++N      V ILR G +  E +++ + V       E +   SPG    HYAP  + 
Sbjct: 184 ESTVINTLINPPV-ILRKGTISKEMIEKVVGVVTFSSPGEGTI--SPGTKYKHYAPGVKT 240

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLK-----------EAAFNLFNY 285
                  +P    +  G +  K+ +  II   L   G  K           E A   F  
Sbjct: 241 TYIKKISSPDHFNLLMGTIS-KDKKIGIIHFGLDIEGSYKNIKIENLSGNPEYASKFFYR 299

Query: 286 MKIADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319
                +     I    +P +HGL I++ +R+ER +
Sbjct: 300 TLRKMEKSVDEIIILPLPEHHGLWISLEDRIERGS 334


>gi|164662685|ref|XP_001732464.1| hypothetical protein MGL_0239 [Malassezia globosa CBS 7966]
 gi|159106367|gb|EDP45250.1| hypothetical protein MGL_0239 [Malassezia globosa CBS 7966]
          Length = 471

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 126/253 (49%), Gaps = 24/253 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++L KA   L +G  +A PTETVYGL   +    A  R+Y  K RPA NPLI HVSD  M
Sbjct: 53  SSLEKAASHLRSGQLVAFPTETVYGLGACALRTDAAERIYHAKNRPADNPLIVHVSDRRM 112

Query: 70  VKK----HASVDPLSLHLAKLFWPGPLTLV----LDLLSTTDIHPLSTANLKTACFRVPC 121
           + K        +     L K FWPGPLTL+    LD      I    T    T   R+P 
Sbjct: 113 LSKLLPSKYPYNAACEALMKAFWPGPLTLLFPVGLDDQGLPRIPSTVTCGQSTVGLRMPS 172

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI-PLIIDGGISKIGLEST 179
               + LI   G P+A PSAN SG+ S T   H+ +    + +   I+DGG   IGLEST
Sbjct: 173 HPIARALISLAGVPVAAPSANASGRPSPTTAGHVFTDLGPRHVLSYIVDGGECSIGLEST 232

Query: 180 IVNVQCE-KKVRILRPGGLEIETLKRAISV-------------ELEYCVDETSTPQSPGM 225
           +V+      +VR+LRPGG+ +E + +A+               +L     + + P +PGM
Sbjct: 233 VVDATTTPGEVRVLRPGGISVEQIAQALEQAGLSSLSLRVYGRDLARSAQQEAAPTTPGM 292

Query: 226 LKSHYAPRSQVRL 238
              HY+P ++V L
Sbjct: 293 KYRHYSPEARVLL 305


>gi|15921819|ref|NP_377488.1| hypothetical protein ST1526 [Sulfolobus tokodaii str. 7]
 gi|328877147|pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With
           L-Threonine And Amppnp
 gi|15622606|dbj|BAB66597.1| 352aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 352

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 156/326 (47%), Gaps = 19/326 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++ A + +  G  +A PTETVYGL  ++ +  A  ++++ K RP  NPLI H++D + 
Sbjct: 15  DKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQ 74

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A   P   L +A++ WPGPLT VL    T  +    TA L T   R+P      +L
Sbjct: 75  LFEVAKDIPDKVLEIAQIVWPGPLTFVLK--KTERVPKEVTAGLDTVAVRMPAHPIALQL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN + + S T  + ++   +   + +IIDGG +  G+ESTI+NV  E 
Sbjct: 133 IRESGVPIAAPSANLATRPSPTKAEDVI-VDLNGRVDVIIDGGHTFFGVESTIINVTVEP 191

Query: 188 KVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRL---RA 240
            V +LRPG   IE LK+        E      E     +PGM   HYAP +++ L   R 
Sbjct: 192 PV-LLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGMKYKHYAPNTRLLLVENRN 250

Query: 241 IHVNPREALIRFGNVPI---KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGA 294
           I  +    L +   V +   K +      L    L     L E A NLF+  +  D    
Sbjct: 251 IFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNV 310

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
                   P  G+G AI NR  +A+ 
Sbjct: 311 DLGIMIGFPERGIGFAIMNRARKASG 336


>gi|329121079|ref|ZP_08249710.1| Sua5/YciO/YrdC/YwlC family protein [Dialister micraerophilus DSM
           19965]
 gi|327471241|gb|EGF16695.1| Sua5/YciO/YrdC/YwlC family protein [Dialister micraerophilus DSM
           19965]
          Length = 345

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 166/333 (49%), Gaps = 30/333 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ + K    +  G  +A PTETVYGL  ++ +  A +++Y+ K RP+ NPLI HV+D S
Sbjct: 14  SDLVNKLGYIIRKGGLVAFPTETVYGLGGNALSSKAAKKIYKAKGRPSDNPLIVHVADKS 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVP-CGFTK 125
            VK    +++ L   L  L+WPGPLT+V +     DI P  T+  L T   R P    T+
Sbjct: 74  QVKNFVKNINDLEHKLMDLYWPGPLTIVFE---KKDIIPYETSGGLDTVAIRCPDNNATR 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI     PLA PSAN S + S T  K +L + +   I  +ID G SKIGLESTIV V  
Sbjct: 131 ALIRAAKVPLAGPSANISTRPSPTYAKSVL-NDLDGRINAVIDNGDSKIGLESTIVAVN- 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-TPQSPGMLKSHYAPRSQVRLRAIHVN 244
           E K+ I RPG +  E L       L+  + +++  P++PGM   HYAP + + +   + N
Sbjct: 189 EGKIIIYRPGAITQEMLSELAPTSLDTALKKSNEKPKAPGMKYRHYAPSAPLEIYVGNEN 248

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKT--------------GKL---KEAAFNLFNYMK 287
             E  I    + + N  + I    +SK               GK    K  A NLF  + 
Sbjct: 249 KVEESI----LEVSNENDKIYGFFVSKETAEKLPKNSIVFCWGKRSDKKSMARNLFKGLL 304

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             +      I      N G+G+AI NRL++A+ 
Sbjct: 305 FFNSKKIDQIIGEGTDNKGIGMAIMNRLKKASG 337


>gi|257899727|ref|ZP_05679380.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com15]
 gi|257837639|gb|EEV62713.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com15]
          Length = 311

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 160/307 (52%), Gaps = 20/307 (6%)

Query: 32  VYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPG 90
           +YGL  ++  P  +++++ +K RP  NPLI HV+    VK++  +  P +  + K FWPG
Sbjct: 1   MYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPEAEKIVKNFWPG 60

Query: 91  PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149
           PLTL+  +   T +  + T  L TA FR+P    T ++IE  G PL  PSAN SG+ S T
Sbjct: 61  PLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPT 119

Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAISV 208
              H+    +  +I  II+ G ++IG+EST++++     +  ILRPG +  E ++  I  
Sbjct: 120 TADHVF-HDLQGKITGIIEDGATRIGVESTVLDLSNPTAMPMILRPGAVTKEQIEAVIGS 178

Query: 209 EL---EYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAIHVN-PREALIRFGNVPIKN 259
            +   ++ V E  TP++PGM   HY+P ++V +      +I V   +   IR G +    
Sbjct: 179 PVAVDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWSIAVQWAKNKKIRAGVIASPE 238

Query: 260 IENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS--GASSIAFSSIPNHGLGIAINN 313
           I + +     ++ +     ++ AA  LF  ++  D+   G   I     P  GLG A  N
Sbjct: 239 IADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMN 298

Query: 314 RLERAAA 320
           RL++AA 
Sbjct: 299 RLKKAAG 305


>gi|163848701|ref|YP_001636745.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526643|ref|YP_002571114.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl]
 gi|163669990|gb|ABY36356.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450522|gb|ACM54788.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl]
          Length = 351

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/240 (38%), Positives = 134/240 (55%), Gaps = 15/240 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-- 64
           T   A+  A E L  G  +A PTETVYGL   + +  A+  ++  K RPA +PLI H+  
Sbjct: 8   TSPAAIAMAGELLRRGELVAFPTETVYGLGGHALDERAVAAIFTAKGRPANDPLIVHITA 67

Query: 65  -SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG 122
            +D+ +V   A+V PL+  LA   WPGPLTL++         PL+ TA  +T   RVP  
Sbjct: 68  ATDLPLVA--ATVPPLAGRLAAACWPGPLTLIVPRHPRV---PLTVTAGRETVAVRVPSH 122

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              ++L+   G P+A PSANR G  S T   H+L + +   I  +IDGG + IG+EST++
Sbjct: 123 PIAQELLRAAGVPVAAPSANRFGHTSPTTADHVL-ADLDGRIAAVIDGGATPIGIESTVL 181

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +   +    +LRPGG+ +ETL   I  V+L  +   DE     +PG+L+ HYAP  ++ L
Sbjct: 182 DCTTDPPT-LLRPGGISLETLTDLIGEVQLRSQPTADEAHGLTAPGLLERHYAPDHELWL 240


>gi|312134922|ref|YP_004002260.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor owensensis
           OL]
 gi|311774973|gb|ADQ04460.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor owensensis
           OL]
          Length = 348

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 159/334 (47%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S  
Sbjct: 12  DYEKLEKAASILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISSK 71

Query: 68  SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M+   A + D     L + FWPGPLT+VL       I    TA L T   R+P      
Sbjct: 72  EMLGMCAEITDERVYMLIERFWPGPLTIVLP--KKNSIPDNVTAGLSTVGVRMPANKIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI     P+A PSAN SG+ S T  KH++   + K + +IIDGG    GLEST+V++  
Sbjct: 130 ELIRLSDVPVAAPSANVSGKPSPTEAKHVIEDLMNK-VDVIIDGGKCSFGLESTVVDLSG 188

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST---PQSPGMLKSHYAP-------RS 234
            + V ILRPG +    LK  + ++E    V E  T   P+SPGM   HYAP       + 
Sbjct: 189 GEAV-ILRPGAISYYALKEVLGNIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVKG 247

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------KEAAFNLFNYM 286
           ++  R   +N  +  + F    +  +     + N     KL        KE   NLF+ +
Sbjct: 248 RIDKRIDKINEMKKKLEFKAHRVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSLL 307

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  +  G   I       +   +A+ NRL +AAA
Sbjct: 308 RKFNQLGVDYILCEWGEFNLEFLALENRLYKAAA 341


>gi|257439052|ref|ZP_05614807.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257198542|gb|EEU96826.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 302

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 12/240 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +  A+ KA + L  G  +A+PTETVYG+A D+RN  A+ +++  K RP  NPLI HV+ 
Sbjct: 13  AEGEAIAKAADLLRRGELVALPTETVYGIAADARNGAAVAKIFVAKGRPQDNPLIVHVTG 72

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M+    S  P     L   F PGPLT+++      ++     A L T   R+P     
Sbjct: 73  PEMLPGLVSEVPERAQLLMAAFCPGPLTIIMP--RGPEVAAECCAGLDTVGIRMPSHPVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +I   G   A PSAN SG+ S TN + +  + +   +PLI+DGG   +G+EST+++V 
Sbjct: 131 RAVIAQSGCAFAAPSANLSGKPSPTNAQDVF-TDMDGRLPLILDGGECDVGVESTVISVV 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQVRL 238
            EK   + RPG + +E L+RA+  E+E        + E +  +SPGM   HYAP++ V L
Sbjct: 190 GEKPT-LFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKADVTL 248


>gi|171915109|ref|ZP_02930579.1| Sua5/YciO/YrdC/YwlC family protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 329

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 172/336 (51%), Gaps = 31/336 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDIS 68
           + +A   L AG  +A+PTETVYGLA D+ N  A+ +++  K+RPA +PLI H+    D+ 
Sbjct: 1   MDEAVRALSAGEVVALPTETVYGLAADALNADAVAKVFAAKERPAFDPLIVHLPHKKDLD 60

Query: 69  MVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
           +V +    +  +   + + FWPGPLT+VL   +   +  L TA + T   R        +
Sbjct: 61  LVAEVPEDIAEVVKKITEKFWPGPLTIVLPKKAV--VPDLVTAGMPTVAVRASNHLVFNR 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +  +   PLA PSANR G IS T+   +  + +   IPLI+D G +  GLESTI+ ++  
Sbjct: 119 VARSLDKPLAAPSANRFGSISPTSASAV-QAELDGRIPLILDAGATMHGLESTIIRIEAA 177

Query: 187 K---KVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAI 241
           K   ++ ILRPG +  + LK      L   +  +E    ++PG L SHYAPR+ +RL   
Sbjct: 178 KPKARIIILRPGPITPDDLKPFGKPILARNLKPEEQEKLEAPGQLPSHYAPRTPLRLLE- 236

Query: 242 HVNPRE---------ALIRFGNVPIKNIENA-----IISLNLSKTGKLKEAAFNLFNYMK 287
             +P E         AL+ +   P     +      ++ L+  K GKL EAA   F  ++
Sbjct: 237 --SPEEFTPEPGKKYALLSYRGDPDDGYSDLAEWDHVMVLSPGK-GKLPEAAVRFFFALR 293

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
             D  G   I    +P   LG+A+ +RL RA+  R+
Sbjct: 294 ELDKLGVDEIIAEPLPERELGLAMMDRLRRASVKRS 329


>gi|256842836|ref|ZP_05548324.1| Sua5 family translation factor [Lactobacillus crispatus 125-2-CHN]
 gi|256848800|ref|ZP_05554234.1| Sua5 family translation factor [Lactobacillus crispatus MV-1A-US]
 gi|295692625|ref|YP_003601235.1| sua5/ycio/yrdc/ywlc family protein [Lactobacillus crispatus ST1]
 gi|312977644|ref|ZP_07789391.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus CTV-05]
 gi|256614256|gb|EEU19457.1| Sua5 family translation factor [Lactobacillus crispatus 125-2-CHN]
 gi|256714339|gb|EEU29326.1| Sua5 family translation factor [Lactobacillus crispatus MV-1A-US]
 gi|295030731|emb|CBL50210.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus ST1]
 gi|310895383|gb|EFQ44450.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus CTV-05]
          Length = 333

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 159/329 (48%), Gaps = 20/329 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + +  A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPLI  VS
Sbjct: 5   IFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPLIVTVS 64

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D  M+ K+A   P  +  L K FWPGPLTL+L  +    +    T  L T  FR P    
Sbjct: 65  DEEMMAKYAKEVPERAKKLIKHFWPGPLTLLL-FVKPGTLPDAVTGGLDTVAFRCPDDQL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G+P+  PSAN S + S T  +H+    +  +I  IID G +++GLESTI+++
Sbjct: 124 THDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   V    
Sbjct: 183 SVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEPV---V 238

Query: 241 IHVNPRE-ALIRFGN-VPIKNIENAIISLNLSKTGK------LKEAAFNLFNYMKIADDS 292
           +  +P + A I F     +  +   +  +NL +  K      L +A  NLF  ++  DD 
Sbjct: 239 VVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRYFDDQ 298

Query: 293 GA-SSIAFSSIPNHGLGIAINNRLERAAA 320
               +I           +A  NRL +AA 
Sbjct: 299 DDIETIYVQGFHEGEESLAYMNRLNKAAG 327


>gi|71001138|ref|XP_755250.1| translation initiation protein Sua5 [Aspergillus fumigatus Af293]
 gi|66852888|gb|EAL93212.1| translation initiation protein Sua5 [Aspergillus fumigatus Af293]
 gi|159129334|gb|EDP54448.1| translation initiation protein Sua5 [Aspergillus fumigatus A1163]
          Length = 433

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 140/255 (54%), Gaps = 26/255 (10%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +S+A+ +A   L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H+  
Sbjct: 38  ESSAIEEAAHLLRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHIDS 97

Query: 67  ISMVKK---HASVDP-------------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           I M+++    AS  P             +   L + FWPGPLT++L   S + +    TA
Sbjct: 98  IEMLERLLNPASSSPTRTTRTAKNTIPAIYQPLIERFWPGPLTILLHNPSGSLLADEVTA 157

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           NL T   R+P     + LI     PLA PSAN S + S T  +H+    +   I LI+DG
Sbjct: 158 NLTTFGVRMPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLEGRINLILDG 216

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA---ISVELEY---CVDETSTPQSP 223
           G   +G+EST+V+    K   ILRPGG+ IE L+      +V++ Y    +D    P++P
Sbjct: 217 GPCGVGVESTVVD-GLSKPPAILRPGGVGIEELRTVPGWENVQIAYHDGNLDVKEVPRAP 275

Query: 224 GMLKSHYAPRSQVRL 238
           GM   HY+P+++V L
Sbjct: 276 GMKYRHYSPKARVVL 290


>gi|47570467|ref|ZP_00241100.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus G9241]
 gi|47552863|gb|EAL11281.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus G9241]
          Length = 299

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 21/296 (7%)

Query: 41  NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLL 99
           N  AI +++E K RP+ NPLI H+   S +      + P++  L + FWPGPLT++L   
Sbjct: 2   NDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILP-- 59

Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
               I    TA L T   R+P       LIE    P+A PSANRSG+ S T   H+    
Sbjct: 60  RKEGISERVTAGLNTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVYED- 118

Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAIS-VELEYCV-D 215
           + ++I  I+DGG + +G+EST+++  C   V  ILRPGG+  E L+  I  V L+  + D
Sbjct: 119 LNEKIAGIVDGGATGVGVESTVID--CTSAVPTILRPGGITKEQLEAVIGMVSLDPALKD 176

Query: 216 ETSTPQSPGMLKSHYAPR--------SQVRLRAIHVNPREALIRFG---NVPIKNIENAI 264
           E   P+SPGM  +HYAP+        S+  ++ I    +E   + G       +++ +A 
Sbjct: 177 EKEKPKSPGMKYTHYAPKAPLSIVEGSREFIQLIVDKKKEEGFKVGVLTTEEYQHVYSAD 236

Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           + L+      L   A  L++ ++  D S    I   S PN G+G AI NRL +AA 
Sbjct: 237 VVLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAG 292


>gi|257896819|ref|ZP_05676472.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com12]
 gi|257833384|gb|EEV59805.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com12]
          Length = 311

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 22/308 (7%)

Query: 32  VYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPG 90
           +YGL  ++  P  +++++ +K RP  NPLI HV+    VK++  +  P +  + K FWPG
Sbjct: 1   MYGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPETEKIVKNFWPG 60

Query: 91  PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149
           PLTL+  +   T +  + T  L TA FR+P    T ++IE  G PL  PSAN SG+ S T
Sbjct: 61  PLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPT 119

Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAISV 208
              H+    +  +I  IID G ++IG+EST++++     +  ILRPG +  E ++  I  
Sbjct: 120 TADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIES 178

Query: 209 EL---EYCVDETSTPQSPGMLKSHYAPRSQVRL-------RAIHVNPREALIRFGNVPIK 258
            +   ++ V E  TP++PGM   HY+P + V +        A+    +   IR G +   
Sbjct: 179 PVAIDQHLVKENETPKAPGMKYKHYSPDTCVLMVREGDWSTAVQW-AKNKKIRVGVIASP 237

Query: 259 NIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADDS--GASSIAFSSIPNHGLGIAIN 312
            I + +     ++ +     ++ AA  LF  ++  D+   G   I     P  GLG A  
Sbjct: 238 EISDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYM 297

Query: 313 NRLERAAA 320
           NRL++AA 
Sbjct: 298 NRLKKAAG 305


>gi|30248949|ref|NP_841019.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas europaea ATCC
           19718]
 gi|30138566|emb|CAD84857.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Nitrosomonas europaea ATCC 19718]
          Length = 339

 Score =  135 bits (340), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 175/339 (51%), Gaps = 52/339 (15%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L +G  +A PTETVYGL  D   P AI++++EIK RP+ +PLI H +++S ++
Sbjct: 16  ITQAVMSLRSGNVVAFPTETVYGLGADISQPQAIQKIFEIKGRPSSHPLIVHFANLSELE 75

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128
             A   P +   LA+ FWPGPLTL+   L+ ++  PLS T   +T   R+P      KL+
Sbjct: 76  FWAENIPATAWILAQHFWPGPLTLI---LTKSNHIPLSVTGGQETVGLRIPRHPIALKLL 132

Query: 129 ETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           E  G    LA PSANR G +S T   H+  ++   +I +I+DGG  ++GLESTIV+   +
Sbjct: 133 EQLGSCKALAAPSANRFGFVSPTIADHV-KNAFNDKIEVILDGGPCEVGLESTIVSC-ID 190

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP-------------- 232
           K V ILRPGG+ + +++  +  + +  V   +  ++PG L SHYA               
Sbjct: 191 KDVTILRPGGISVLSIENLL--QQKVSVKSQNKIRTPGSLSSHYATATPLEICQSSESLF 248

Query: 233 -----------RSQVRLRAIHVNPR-EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280
                      R+ V +R+IH+ P   +  +F  + + N   A         GK      
Sbjct: 249 SRSFDLLQQGIRTAVIIRSIHLIPMLNSDDKFHYILMPNDPVAF--------GK------ 294

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +L+  ++  DD+    I   + P+    +A+ +RL RA+
Sbjct: 295 DLYATLRKLDDANFERILVEAPPDDLEWLAVADRLSRAS 333


>gi|86606322|ref|YP_475085.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554864|gb|ABC99822.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab]
          Length = 366

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 161/343 (46%), Gaps = 41/343 (11%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS--- 68
           A E L  G  +AIPTETVYGLA    N  A+  ++  K+RP  NPLI H+    D+    
Sbjct: 16  AAEALRRGQLVAIPTETVYGLAGHGLNEQAVAEIFAAKERPRFNPLILHLPAGLDLETLQ 75

Query: 69  --MVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             +V   A        L  L   FWPGPLTLVL     + +  L T+ L T   R+P   
Sbjct: 76  GWLVDLEAFTPAARARLGSLVDTFWPGPLTLVLP--KGSRVPDLVTSGLPTVALRMPAHP 133

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + L+     PLA PSANR G++S T+ + +  + +   IP I+DGG   +GLEST++ 
Sbjct: 134 VAQALLRAVQVPLAAPSANRFGRLSPTSAQAVY-AELAGRIPYILDGGECSVGLESTVLK 192

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY--CVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +  +    +LRPGG+  E L+  +++ L      D   +P++PG L SHYAP   + L  
Sbjct: 193 LSPDGTPTLLRPGGIPREVLESHLNLPLSSPPAPDGKESPEAPGQLSSHYAPGKPIWLLP 252

Query: 241 I---HVNPRE--------------ALIRFGNVPIKNIEN-----AIISLNLSKTGKLKEA 278
                + P +               ++ F   P    E+       ++  L   G    +
Sbjct: 253 TAFAQLQPEDWQQLRRLATGHSHLGILSFAAKPEALAESLSRHCPEVTFTLECLGPDPNS 312

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPN--HGLGIAINNRLERAA 319
           A + F       D GA+++  +  P    GLG AI +RL RA+
Sbjct: 313 AAHAFFASLRRLDEGAATLLLAEPPPVVTGLGYAIMDRLRRAS 355


>gi|317033381|ref|XP_001395551.2| protein SUA5 [Aspergillus niger CBS 513.88]
          Length = 434

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 138/255 (54%), Gaps = 26/255 (10%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ A+  A + L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HV  
Sbjct: 39  EAAAIEDAAQLLRTSDIPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIIHVDS 98

Query: 67  ISMVKK----------------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           + M+++                  ++ P+   +   FWPGPLT++L   S + + P  T+
Sbjct: 99  LGMLERLLNPTQESPSRRTSTAKNAIPPIYDSVISRFWPGPLTILLPNPSGSPLAPEVTS 158

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   R+P     + LI     PLA PSAN S + S T  +H+    +   I LI+DG
Sbjct: 159 KLTTFGVRMPSSPLARLLIHVTDRPLAAPSANASTKPSPTAAEHVF-HDLEGRIELILDG 217

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSP 223
           G   +G+EST+V+   +    ILRPGG+ IE L+      +V++ Y    +D    P++P
Sbjct: 218 GPCGVGVESTVVDGLSDPPA-ILRPGGIGIEELRTCAGWENVQVGYHDGTLDVKEIPRAP 276

Query: 224 GMLKSHYAPRSQVRL 238
           GM   HY+P+++V L
Sbjct: 277 GMKYRHYSPKARVVL 291


>gi|322505247|emb|CBZ14756.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 382

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 172/359 (47%), Gaps = 53/359 (14%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+A + L  G  +AIPTETVYGL  ++   +A +R+Y +K RP  +PLICHV ++  V+
Sbjct: 12  LRRAADALLQGKLVAIPTETVYGLGGNALIESAAKRIYTVKGRPPTDPLICHVCNLDGVR 71

Query: 72  K-------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           +         +V+ L+  +    WPGPLT+V    +   +    T        R+P    
Sbjct: 72  RLWDLKWDEGAVE-LACAIGAALWPGPLTIVFK--ANPSLPDCVTGGSGYVGARIPNNAI 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLESTIVN 182
           T KL+E    P+A PSAN  G +S T  +H+      ++   LIIDGG S +G+EST+  
Sbjct: 129 TLKLLEMVDVPVAAPSANTFGHVSPTTSQHVYDDLAARDPELLIIDGGQSSVGIESTVAK 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-------VELE----YCVDETSTPQSPGMLKSHYA 231
           V+ +  V +LR G + +  + RAI+       VE+      C   T+  +SPG L +HY+
Sbjct: 189 VESKDLVVVLRRGCITVSMIHRAIAERYPQTRVEVRDMRIMCGSMTAPMESPGQLLTHYS 248

Query: 232 PRSQVRL--------------------RAIHVNP-REALIRFGNVPIKNIENAIISL-NL 269
           PR    L                    R   V P  E ++   N  +    ++ +S  ++
Sbjct: 249 PRVPSSLLTPGSLAMLTASAGVPVYVHRGKDVVPLSETIVLDFNGYLSRFRDSCLSYHDM 308

Query: 270 SKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI-------PNHGLGIAINNRLERAAA 320
           S  G  +E  F +F+ ++  +   GA S+ F  I        N  L  A+ +RL RAA+
Sbjct: 309 SPDGNPEEGCFAVFDALRATETVKGAKSLVFPFISEWPHDKENEDLLAAMEDRLFRAAS 367


>gi|158321595|ref|YP_001514102.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141794|gb|ABW20106.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus oremlandii OhILAs]
          Length = 349

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 169/341 (49%), Gaps = 34/341 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD- 66
           D   + +    L  G  +A PTETVYGL  ++ +  AI++++E K RP+ NPLI H++  
Sbjct: 11  DRRLIVECGSILRNGGVVAFPTETVYGLGANALDANAIKKIFEAKGRPSDNPLIVHIAKK 70

Query: 67  ---ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG 122
              I +VK   ++  +   L + FWPGPLTL   L   +DI P   TA L T   R+P  
Sbjct: 71  EDVIPLVK---NIPEIGRILMEKFWPGPLTL---LFEKSDIIPNEVTAGLSTVGIRMPSH 124

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LIE    P+A PSAN SG+ S T  +H++   + + +  II GG   +GLEST++
Sbjct: 125 PIAGALIEAAQVPVAAPSANTSGRPSPTKGQHVIEDMMGR-VDAIISGGECNVGLESTVL 183

Query: 182 NVQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ++  +  + ILRPGG+  E L+      A+   +E        P+SPGM  +HYAP++ V
Sbjct: 184 DITGDIPM-ILRPGGVTKEMLEAVLGQVAVDAAIEDPSKSVEKPKSPGMKYTHYAPKADV 242

Query: 237 ---------RLRAIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGKLKEAAFN 281
                     +  I V  RE   +   V I      K++    +  ++      +  A  
Sbjct: 243 IVVEGPVEQMVMKIKVLEREYRAKGKRVGIICTEETKDLYGEAMVKSMGSRQVPETIAAC 302

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +F  ++  D++    I   ++    +G AI NRL++AA  R
Sbjct: 303 IFKVLREFDETDVDIILSEAVEAVEIGQAIMNRLKKAAGYR 343


>gi|311696999|gb|ADP99872.1| translation factor, SUA5 type [marine bacterium HP15]
          Length = 329

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 14/323 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +  T S  L KA   L AG  +AIPTETVYGLA D+ N  A+R+++E K+RP  +PLI H
Sbjct: 7   LDATQSGDLEKAASLLLAGHLVAIPTETVYGLAADASNDQAVRKVFEAKQRPVGHPLIVH 66

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V+    +       P  +  L + FWPGPLTL+L     + +    T        R+P  
Sbjct: 67  VASPDRISLWVDQIPDTARRLVQAFWPGPLTLLLP--KKSGVSDFITGGNPGVAVRMPAH 124

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T   ++  G  L  PSAN  G+IS TN +H+L + +  +I  ++DGG   +G+ESTIV
Sbjct: 125 PATLAAMQRLGRDLVAPSANPYGRISPTNAEHVL-AGLSGKIEAVLDGGDCSVGIESTIV 183

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV----- 236
           ++  +  V I RPG +    ++  + + L     + ++   PG +K HY P +       
Sbjct: 184 DLTGDTPV-IARPGQIAKSDIEACLGIAL--APGKAASQAVPGSVKRHYQPVTPTVGVAT 240

Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
            R   +      A  + G +  ++    + S ++  +    E A  L+  M   D +   
Sbjct: 241 DRFAGLLPEVTPAGEKIGVIWWQSAPGELASESIMLSADPNEYARMLYTAMHAMDKANVD 300

Query: 296 SIAFSSIPNHGLGIAINNRLERA 318
            I     P     +A+++RL RA
Sbjct: 301 RIVIELPPRESQWLAVHDRLGRA 323


>gi|284047802|ref|YP_003398141.1| Sua5/YciO/YrdC/YwlC family protein [Acidaminococcus fermentans DSM
           20731]
 gi|283952023|gb|ADB46826.1| Sua5/YciO/YrdC/YwlC family protein [Acidaminococcus fermentans DSM
           20731]
          Length = 368

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 166/331 (50%), Gaps = 30/331 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  +A PTETVYGL  D  N  A R+++  K RPA NPLI H+S+   + 
Sbjct: 18  LAPAARLLQQGEVVAFPTETVYGLGADGLNGEACRKIFAAKGRPADNPLILHISEKEEIL 77

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              S + P++  L + FWPGP+TL++    +  I  + TA  +T   R P     + LI 
Sbjct: 78  PLTSGLSPMAEKLMEAFWPGPMTLIVP--KSDRIPEVVTAGQETVAVRFPSNPVARALIR 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN+SG+ S TN + +L   +   I  ++DGG   IG+ESTI++      V
Sbjct: 136 LTGRPLAAPSANKSGKPSPTNAQDVL-QDMDGIIGGVVDGGACDIGVESTIIDTTGTVPV 194

Query: 190 RILRPGGLEIETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPGG+  E ++  +  VEL+   V     P++PGM   HYAP++ + L    +   E
Sbjct: 195 -ILRPGGITEEMIQEVMGEVELDPGLVRPDQKPKAPGMKYRHYAPKAPMVL----IEGPE 249

Query: 248 ALIRFGNVPIK----NIENAIISLN-------------LSKTGK-LKEAAFNLFNYMKIA 289
           A +      I      ++  +++L+             +   GK L + A NL+  ++  
Sbjct: 250 AGLGVIRAAIMAEAWGLKVGVLALDETVGHLPHAAHLVICNAGKDLGDLAENLYTELREF 309

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D      I    +   GLG+AI NR+ ++A 
Sbjct: 310 DRQQVDIILGEGVSTRGLGLAIMNRMRKSAG 340


>gi|299143533|ref|ZP_07036613.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518018|gb|EFI41757.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 349

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 159/324 (49%), Gaps = 24/324 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L  G  +  PTETVYGL  +  + TA + ++  K RP  NPLI H+++IS +      V 
Sbjct: 25  LKNGKLVVFPTETVYGLGANGLDETACKNIFNAKGRPGDNPLILHIAEISQLDDLVEDVS 84

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
             +  L  +FWPGPLT++     ++ I  + +A L T   R+P     +++++    P+A
Sbjct: 85  ESARDLIDMFWPGPLTMIFK--KSSKIPDVVSAGLDTVAVRMPSHKIAREILKDCMIPIA 142

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ K +    +  ++ +I+DGG + +G+EST+V++     + ILRPG 
Sbjct: 143 APSANLSGKPSPTSFKRVF-EDLDNKVDIIVDGGRADVGIESTVVDMTVNPPM-ILRPGK 200

Query: 197 LEIETLKRAISVELEYCVDETST----PQSPGMLKSHYAPRSQV-----RLRAI--HVNP 245
           +  E LK  I           S+    P+SPG    HYAPR++       L  +   +N 
Sbjct: 201 VTTEDLKIIIPDIKIDSATIDSSDGKIPKSPGQKYKHYAPRAEAYCFVGNLDNVVKEINK 260

Query: 246 R---EALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
           R      ++ G +  +  ++  I     +NL     + E A NLF  ++  DD     I 
Sbjct: 261 RISENKNLKIGVLATEETKDYYIGAHILINLGSRENMSEIASNLFEALRECDDEKVDYIY 320

Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322
                  G+G+ I NRL +A   R
Sbjct: 321 TEGFELRGIGVGIMNRLLKACGGR 344


>gi|167388661|ref|XP_001738645.1| sua5 [Entamoeba dispar SAW760]
 gi|165898009|gb|EDR25013.1| sua5, putative [Entamoeba dispar SAW760]
          Length = 357

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 161/332 (48%), Gaps = 29/332 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  +  A + +  G  +  PTETVYGL  D   P AI +++++K RP  NPLICH+SDI
Sbjct: 28  DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87

Query: 68  SMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            M+ K   H S D  +  L K FWPG LT++     T  +    TA L T   R+P    
Sbjct: 88  EMLNKLAAHVSED--AHKLIKRFWPGALTIIFPRNET--VPNEVTAGLNTVGVRMPSHPI 143

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             + I+    P+A PSAN S + S T  +H +   +   I +IIDGG   IG+EST++ +
Sbjct: 144 AYEFIKQCKTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGACDIGVESTVLLL 202

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAP------- 232
             E    ILRPGG+ +E L+  I     Y +       + P +PGM   HYAP       
Sbjct: 203 GNEHPT-ILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAPSVDTIVI 261

Query: 233 ----RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMK 287
               RS+  +   H   +    R G V   ++E+   +L +  TG + K  A  LF  M+
Sbjct: 262 TGDKRSEKLIELCHEYMKSGK-RVG-VVCWSLESLNCTLFMKVTGDRYKGMAHALFTDMR 319

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             D      I    +     G+A+ NR ++AA
Sbjct: 320 DLDGK-VDIILIEGVQEIKEGLAVMNRAKKAA 350


>gi|239617335|ref|YP_002940657.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506166|gb|ACR79653.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 342

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 166/336 (49%), Gaps = 35/336 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A  +L  G  +A PTETVYGL  ++ +  A  +++E K RP  NPLI HVS I
Sbjct: 14  DKGIILRAARYLQKGELVAFPTETVYGLGANALDAKAASKIFEAKGRPQDNPLIVHVSSI 73

Query: 68  SMVKKHASVDPLSLH--LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            M ++   +D L+ +  L +L WPGP+T++     +  I  + TA L     R P     
Sbjct: 74  EMAQELV-LDDLNDYKWLVELLWPGPVTIIFR--KSRRIPDIVTAGLPNVGIRFPSHPVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +KLIE  G P+A PSAN SG+ S T+  H++   +   I  ++  G +  GLESTIV++ 
Sbjct: 131 QKLIEIAGLPIAAPSANLSGRPSPTDEFHVI-EDMDGRIACMLLAGKTLFGLESTIVDL- 188

Query: 185 CEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQ-SPGMLKSHYAPRSQVRLR 239
              K  +LRPG + +E LK         E     ++ S P  +PGM   HY+P+  + L 
Sbjct: 189 SRGKPTLLRPGPISVERLKTLFPDLEVPEFVKAEEKYSGPALAPGMKYRHYSPK--IELI 246

Query: 240 AIHVNPREALIRFGNVPIKNIE-NAIISLN---------------LSKTGKLKEAAFNLF 283
            +  +PRE   R+  +     E N+II  +               L     L E A NLF
Sbjct: 247 LVEGDPRE---RYKEIITFAFEKNSIILCSRETEHLYPGEIKRRVLGSRDNLYEVAANLF 303

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             ++   +     I   + P  G+G+AI NRL +AA
Sbjct: 304 YALREPGEE-FERIVSEAFPETGVGLAIMNRLRKAA 338


>gi|255718989|ref|XP_002555775.1| KLTH0G17116p [Lachancea thermotolerans]
 gi|238937159|emb|CAR25338.1| KLTH0G17116p [Lachancea thermotolerans]
          Length = 401

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 162/355 (45%), Gaps = 43/355 (12%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+ N L  A    D    +  PTETVYGL   S N  ++  +Y+ K RP+ NPLI H+S 
Sbjct: 43  TEQNLLEAARTIRDTDDTVGFPTETVYGLGGSSLNDKSVLNIYKAKNRPSDNPLISHISS 102

Query: 67  ISMVKKH-----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           I  + +             ++  +   L +  WPGPLT++L +   + +  L+TA+  T 
Sbjct: 103 IDQLNRKIYGQESCSDILQNIPQIYRSLTEKLWPGPLTILLPVPQQSTLSKLTTADQPTF 162

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI     P+A PSAN+S + S T   H+    +   IPLI+DGG   +
Sbjct: 163 AVRIPSNPIARALIALSDTPIAAPSANQSTRPSPTLASHVF-HDLKGRIPLILDGGACSV 221

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA-------ISVELEYCVDETSTPQSPGMLK 227
           G+EST+V+      + +LRPGG   E ++           VE +  V E    ++PGM  
Sbjct: 222 GVESTVVDGLVSPPL-LLRPGGFTWEQIRSMGGPQWVDCKVENKKTVSEGEKVRTPGMKY 280

Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVP------IKNIENAIISLNLSKTGKL------ 275
            HY+P+++V L A          R  NV        +++    +  +L+    L      
Sbjct: 281 RHYSPQAKVILFAPQEGSAPLEKRLENVKSVITDHARDVRGFAVLSSLTFPDNLLDDPHG 340

Query: 276 ---------KEAAFNLFNYMKIADDSGASSIAF-SSIPNHGLGIAINNRLERAAA 320
                     E   NLF Y++  D+     I F   I   G G+A+ NRL +AA+
Sbjct: 341 IYRCLGSSNTEIQANLFAYLRQVDEMPNIDIIFVEGIDEEGEGLAVMNRLRKAAS 395


>gi|224534462|ref|ZP_03675038.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia spielmanii A14S]
 gi|224514139|gb|EEF84457.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia spielmanii A14S]
          Length = 333

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 168/338 (49%), Gaps = 33/338 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IISSNQIQKAAKLIKMGELVIFPTETVYGIGANAYNEDAVKMIFLVKKRPIENPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P    
Sbjct: 66  TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFISGNLDTVAIRIPANKI 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS------KIGLE 177
              LI+    P+A PSAN S + S T+ +  L     KE+  ++ G I        IG+E
Sbjct: 124 ALNLIKASKVPIAAPSANISKRPSSTSFEMAL-----KELNGLVRGIIKTENKDFNIGIE 178

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETST----PQSPGMLKSHYA 231
           ST++    +  V ILRPG +     K+ I  EL  +Y V+   T     +SPG +  HY 
Sbjct: 179 STVIGFDLKDNVLILRPGAIT----KKMIEKELKGKYTVNYAETKIELEKSPGNIIEHYK 234

Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLFN 284
           P+  V L     N R  L +   + I    +++ + +      N+     L+E A NL+ 
Sbjct: 235 PKIPVYLFKSQDNIRRYLNKDTKILITKPTLKSYLFNFLWDKKNIKVFNTLEEYAQNLYK 294

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            + +  ++    I    + + GLG +INNR+++A++ R
Sbjct: 295 EL-VNSENNYKQILSEFVKDEGLGYSINNRIKKASSNR 331


>gi|302830981|ref|XP_002947056.1| hypothetical protein VOLCADRAFT_56845 [Volvox carteri f.
           nagariensis]
 gi|300267463|gb|EFJ51646.1| hypothetical protein VOLCADRAFT_56845 [Volvox carteri f.
           nagariensis]
          Length = 374

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 162/338 (47%), Gaps = 63/338 (18%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +AIPTETVYGLA ++ +  A+ R+Y  K RPA NPLI HVS + M+   AS+ P    L 
Sbjct: 53  VAIPTETVYGLAANALSACAVGRVYTAKNRPADNPLIVHVSSLDML---ASLYPPGWALP 109

Query: 85  KLF-------WPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC-GFTKKLIETYGHPL 135
            ++       WPGPLT+   LL  + + P + T    T   R+P       LI   G PL
Sbjct: 110 SVYEAIVRDLWPGPLTI---LLPRSHLVPDVVTCGQSTMAVRMPAHPVALALIAACGFPL 166

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+ S T  +H+L   +   +PLI+DGG    G+EST+++        ILRPG
Sbjct: 167 AAPSANSSGRPSPTLARHVLDD-LGGRVPLILDGGACTYGVESTVLD-GLRNPPAILRPG 224

Query: 196 GLEIETLK-----RAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           G+  E L        + +     VD    + P +PGM   HY+P + V L    ++P   
Sbjct: 225 GITHEQLAGYPGLEGLQLYRRDFVDPQLEAAPSTPGMKYRHYSPNAPVLL----LDP--- 277

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEA--------------------------AFNL 282
               G+ P  ++ +   +L   +  KL+EA                          A  L
Sbjct: 278 ----GDAPAASVSDE--ALAARQQDKLEEARQGDLWPQRLPPYEYVLGHVSRPAAVASEL 331

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++  D+ G + I    + + G G+A+ NRL +AA+
Sbjct: 332 YAALRHMDEVGVAVIVVEGVRDTGAGVAVMNRLRKAAS 369


>gi|119897671|ref|YP_932884.1| hypothetical protein azo1380 [Azoarcus sp. BH72]
 gi|119670084|emb|CAL93997.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 343

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 129/238 (54%), Gaps = 16/238 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A E L AG  + +PTETVYGLA D+RNP A+RR++  K RPA +PLI H+  +  + 
Sbjct: 14  IQSAAEALRAGELVGLPTETVYGLAADARNPVAVRRIFAAKGRPADHPLIVHLPALDQLS 73

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  A+V   ++ L + FWPGPLTL+L       +    T    T   RVP       L+ 
Sbjct: 74  QWAAAVPVEAVALGRAFWPGPLTLILR--RQPHVPDEVTGGQDTVGVRVPAHPAALALLA 131

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ----C 185
            +G  LA PSANR G+IS T   H+ +  +   + ++IDGG  ++G+ESTI+++     C
Sbjct: 132 AFGSGLAAPSANRFGRISPTTAAHV-AEELGDAVAMVIDGGACEVGIESTILDLSRLDTC 190

Query: 186 EKKVRILRPGGLEIETL-----KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
                ILRPG +  + +     +R +             P+  G L +HYAPR+ +RL
Sbjct: 191 GPV--ILRPGAISADAIAAVIGQRPLGRAESEGAGGAQAPRVAGALAAHYAPRTPMRL 246


>gi|291166474|gb|EFE28520.1| Sua5/YciO/YrdC/YwlC family protein [Filifactor alocis ATCC 35896]
          Length = 339

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 164/334 (49%), Gaps = 29/334 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + ++KA   +  G  +  PTETVYGL  D+ NP A  ++Y  K RP+ NPLI H+SD+
Sbjct: 14  DDDKIKKASNIIQNGGLVIFPTETVYGLGADAFNPVASEKIYSAKGRPSDNPLILHISDL 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG- 122
            M+ K     P   + L   FWPGPLT++    D++S        T  L T   R+P   
Sbjct: 74  DMLNKIVKNVPEKANKLINQFWPGPLTIIFEKKDIVSDK-----ITGGLNTVAVRMPSNP 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                I     P+A PSAN SG+ SIT  +  +   +   +  I+    S+IGLESTI++
Sbjct: 129 IALSFIRNANTPIAAPSANISGKPSITRWEDAV-EEMGNRVDAILLSEPSEIGLESTIID 187

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRA 240
           +  +  + ILR G +    +++AI   E++  +  E   P++PGM   HY+P ++V + +
Sbjct: 188 LTQDVPM-ILRVGKISKTEIEKAIGFTEIDKTIFGEKDIPKAPGMKYKHYSPNAEVFIAS 246

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKT------------GKLKEAAFNLFNYMKI 288
                 +   ++   P  N    I ++N +K+              L+ A F  F++++ 
Sbjct: 247 KENFVEKVKQKYKASPSCN--TVIFTMNQNKSYFKDEKVYLLGETTLQAAKF-FFHFLRK 303

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           AD  G  +I    I    +G A+ NR  ++A  +
Sbjct: 304 ADKEGYDTIIMEDISFDEIGEAVMNRARKSAGNK 337


>gi|331236260|ref|XP_003330789.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309309779|gb|EFP86370.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 423

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 44/247 (17%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD---PLSL 81
           +A PTETVYGL   + + TA+ ++++ K RP+ NPLI HVS ++++K     D   P + 
Sbjct: 68  VAFPTETVYGLGASALSSTAVSKIFKAKGRPSDNPLIVHVSSLNLLKTFVPPDWNFPATY 127

Query: 82  H-LAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
             L + FWPGPLTL++   S+      I  L T  L T   R+P    ++ LI   G P+
Sbjct: 128 QALIERFWPGPLTLLVPTTSSVQPNCPISNLVTCGLPTVAVRMPAHSISRALIAESGVPI 187

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN-VQCEKKVRILRP 194
           A PSAN SG+ S T  +H+    +  +IP+IIDGG  ++G+EST+V+ +  + +VRILR 
Sbjct: 188 AAPSANLSGRPSPTTAQHV-ERDMKTKIPMIIDGGACQVGVESTVVDGLNPDGRVRILRL 246

Query: 195 GGLEIETLKRAISVELEYCVDET-------------------------STPQSPGMLKSH 229
           GGL +E        ++E C+ E                          + P +PGM   H
Sbjct: 247 GGLSVE--------DIEACLIEAGLNLSDGKPILAGVYNQDYRDKELEAKPTTPGMKYKH 298

Query: 230 YAPRSQV 236
           YAP ++V
Sbjct: 299 YAPHAKV 305


>gi|325982712|ref|YP_004295114.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212]
 gi|325532231|gb|ADZ26952.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212]
          Length = 346

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 163/333 (48%), Gaps = 23/333 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S    + +  A + L  G  +A PTETVYGL  D  NP AI ++Y+IK+RP  +PLI H
Sbjct: 13  LSSVQRDQITAAAQILRTGGTVAFPTETVYGLGADVTNPIAIDKIYKIKQRPTHHPLIVH 72

Query: 64  VSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + +IS +   A   P S   LA  FWPGPLTL+L    +  I    T    T   R P  
Sbjct: 73  IGNISHLHYWAKAIPDSAWKLAHHFWPGPLTLILP--RSDRIPDNVTGGQDTVGIRFPAH 130

Query: 123 -FTKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                L+   G    LA PSANR G+IS T   H+    +   + +I+DGG   +GLEST
Sbjct: 131 PVALALLRALGPEKALAAPSANRFGRISPTLAAHV-HQELGNVVDMILDGGACDVGLEST 189

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           I++   +   +ILRPG + +  L+ A++  V L + ++     ++ G L +HYAP + +R
Sbjct: 190 ILSFH-DGIPQILRPGSITLSELEAALNSPVILAHHINNQLI-RTSGSLPAHYAPTTPLR 247

Query: 238 LRA-----IHV------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
           + +      H       N R  +I + N+      N +I    S           L+  +
Sbjct: 248 VYSNTQIWQHAFILAAKNLRVLVITWSNIDKPKFSNQLIE-QFSMPEDPVAYGQQLYAKL 306

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +  D +    +   S P+H   +AI +RL+RA+
Sbjct: 307 RQFDQAEFDYMLIESPPDHPNWLAIADRLQRAS 339


>gi|241889771|ref|ZP_04777069.1| SUA5 domain protein [Gemella haemolysans ATCC 10379]
 gi|241863393|gb|EER67777.1| SUA5 domain protein [Gemella haemolysans ATCC 10379]
          Length = 343

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 180/348 (51%), Gaps = 35/348 (10%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I++I+ S +      K  E+   G  +AIPTETVYGL+ ++ +  A+ ++YE K RP+ 
Sbjct: 4   EIINISKSESKEEIYSKLTEYYKRGKLVAIPTETVYGLSANAMDDEAVSKIYEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           NPLI H  ++S + +   VD    ++ KL   FWPGP+TL+L++     I    TA L T
Sbjct: 64  NPLIVHFYEMSQLDE--IVDYSDENVKKLIDKFWPGPMTLILNVKENNGISKKVTAGLNT 121

Query: 115 ACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P   T + +++     LA PSAN SG+ S T  +H+    +  +I +II+   S 
Sbjct: 122 LAVRMPSNVTARGILKETEILLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSD 180

Query: 174 IGLESTIVNVQCEKK-VRILRPGGL---EIETLKRAISVEL-EYCVDETSTPQSPGMLKS 228
           IGLEST+++  C +  + I RPG +   +IE++    SV+  E  + +   P SPGM   
Sbjct: 181 IGLESTVID--CTRYPLVIARPGDITKEDIESVLGEGSVKYNEEVLTQNVAPISPGMKYR 238

Query: 229 HYAPRSQVRLRAIHVNPREALI--------RFGNVPIKNIENAIISLNLS------KTGK 274
           HY+P +++ L     +  E LI        + G +  K +E+ +  LN+S          
Sbjct: 239 HYSPEAELVL---FNDSFENLINILKDKNQKTGFITYKEMESRVDDLNVSIKYLAENEKS 295

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           ++++  NL+N ++  D+     I    I       A+ NRL +A + +
Sbjct: 296 VEQSNKNLYNILREFDEEKVEEIFILPIEETKENKALLNRLNKAISKK 343


>gi|320591982|gb|EFX04421.1| translation initiation protein sua5 [Grosmannia clavigera kw1407]
          Length = 452

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 129/242 (53%), Gaps = 28/242 (11%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK----KHASVDP 78
           +P+  PTETVYGLA D    +A+R ++ +K RP+ NPLI HV D+ MV+          P
Sbjct: 56  VPVGFPTETVYGLAADVTRSSAVRGIFSVKGRPSDNPLIVHVCDLDMVRGLLGTGEDGQP 115

Query: 79  LSL-----HLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTACFRVPCG-FTKKLI 128
             L      L + FWPGPLT++LD+  +      + P  TA L+T   R+P     + LI
Sbjct: 116 RELPAIYRPLVERFWPGPLTILLDVPDSGSGRWTLAPEVTAGLRTFGCRLPDSPLARTLI 175

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                PLA PSAN S + S T  +H++   +   I  ++DGG   +G+EST+V+  CE  
Sbjct: 176 RLAQAPLAAPSANASTRPSPTTAQHVV-DDLDGRIVAVLDGGPCAVGVESTVVDGLCEPP 234

Query: 189 VRILRPGGLEIETLKRAISVE----------LEYCVDET--STPQSPGMLKSHYAPRSQV 236
           V +LRPGG+ +  L+     E              VD T  + P++PGM   HY+P+++V
Sbjct: 235 V-VLRPGGISMAQLRSVPGWEKVQRAYRDQSAGQPVDGTTATAPRAPGMKYKHYSPKARV 293

Query: 237 RL 238
            L
Sbjct: 294 VL 295


>gi|119480771|ref|XP_001260414.1| translation initiation protein Sua5 [Neosartorya fischeri NRRL 181]
 gi|119408568|gb|EAW18517.1| translation initiation protein Sua5 [Neosartorya fischeri NRRL 181]
          Length = 433

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 139/255 (54%), Gaps = 26/255 (10%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +S+A+ +A   L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H+  
Sbjct: 38  ESSAIEEAAHLLRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHIDS 97

Query: 67  ISMVKK---HASVDP-------------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           I M+++    AS  P             +   L + FWPGPLT++L   S + +    TA
Sbjct: 98  IEMLERLLNPASSSPTRTMRTARNTIPAIYQPLIERFWPGPLTILLHNPSGSLLAGEVTA 157

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           NL T   R+P     + LI     PLA PSAN S + S T  +H+    +   I LI+DG
Sbjct: 158 NLTTFGVRMPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLEGRIDLILDG 216

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA---ISVELEY---CVDETSTPQSP 223
           G   +G+EST+V+        ILRPGG+ IE L+      +V++ Y    +D    P++P
Sbjct: 217 GPCGVGVESTVVD-GLSNPPAILRPGGVGIEELRTVPGWENVQIAYHDGTLDVKEVPRAP 275

Query: 224 GMLKSHYAPRSQVRL 238
           GM   HY+P+++V L
Sbjct: 276 GMKYRHYSPKARVVL 290


>gi|162455228|ref|YP_001617595.1| putative translation factor [Sorangium cellulosum 'So ce 56']
 gi|161165810|emb|CAN97115.1| conserved putative translation factor [Sorangium cellulosum 'So ce
           56']
          Length = 329

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 153/321 (47%), Gaps = 28/321 (8%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  +A PTETVYGL   + +  A R ++E K RP  NPLI HV D++  +  A  
Sbjct: 18  EILRRGGLVAFPTETVYGLGARADDARAARGIFEAKGRPPGNPLIVHVPDVASARALADG 77

Query: 77  DPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
            P     LA+  WPGPLTL++       +  +  A   T   RVP     + L++  G P
Sbjct: 78  WPADAERLAQAMWPGPLTLIV-ARRPDRVAGVVAAGGPTVAIRVPVHPIARALLDAVGLP 136

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           +A PSANRS +IS T  +H+   S+   I  I+DGG + +G+ESTIV+V      R+LRP
Sbjct: 137 IAAPSANRSTEISPTTAEHV-EKSLGGRIDAILDGGPTAVGIESTIVDV-TRSPARVLRP 194

Query: 195 GGLEIETLKRAISVELEYCVDETSTPQ----SPGMLKSHYAPRSQVRL-----------R 239
           G +  E +  A  V ++      + P     SPG    HYAPR+QV L           R
Sbjct: 195 GHVTAEAI--AALVPVQAAAGLVTAPAERAPSPGTHARHYAPRAQVALVPAHAVRGELDR 252

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A     R   + +G+         ++  + +       AA +        +D+G   I  
Sbjct: 253 AAQAGSRAGAVEYGSRTATGPHAELLPGDPAGYAAALYAALHRL------EDAGCDVIVI 306

Query: 300 SSIPNHGLGIAINNRLERAAA 320
           +++P      A+ +RL RA+A
Sbjct: 307 AAVPEDPAWDAVRDRLTRASA 327


>gi|21227350|ref|NP_633272.1| SUA5 protein [Methanosarcina mazei Go1]
 gi|20905707|gb|AAM30944.1| SUA5 protein [Methanosarcina mazei Go1]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 175/355 (49%), Gaps = 37/355 (10%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +++ N    + +A E +  G  +A PTETVYGL  D  NP  + +++E K+RP  N
Sbjct: 12  RILRVSEVNFDVIIDEAAEIIRKGGTVAFPTETVYGLGADGLNPDTVLKIFEAKERPPGN 71

Query: 59  PLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PL   V     +KK A   P  +L L   FWPGPLT+VL+   T  +  +++ NL T   
Sbjct: 72  PLSLLVHSREDIKKVAKNIPEKALLLMDTFWPGPLTIVLEKKDT--VPEITSGNLPTIGL 129

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      +LI+  G PLA PSAN SG+ S +   H+L + +   I  +IDGG + IGL
Sbjct: 130 RMPDHRIPLELIKRAGTPLAAPSANLSGKPSPSLAIHVL-ADLAGRIDAVIDGGGTAIGL 188

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHY 230
           EST+V++  E  V +LR G + I  L++ I          EY   +    +  G   SHY
Sbjct: 189 ESTVVDLTVEPPV-VLRIGAVGIGELEKVIGKIRPTYAGAEYGSGKLMPEKQAGQKYSHY 247

Query: 231 APRSQVRL----RAIHVNPREALIRFGNVPIKNIENAIIS-----------LNLSK---T 272
            P +QV L        V+ +  ++   +V        ++S           LN+      
Sbjct: 248 TPNTQVVLVEGKSEEKVSEQIGILLEEHVSKGQKAGLLLSDETAGFFTAEELNVHDCFLL 307

Query: 273 GKLKE---AAFNLFNYMKIADDSGASSI-AFSSIPNHGLGIAINNRLERAAAPRN 323
           G  KE   AA  LF  ++  D +G   I A  S  + GLG A+ NRL  AA+ R+
Sbjct: 308 GSRKEPEGAAKRLFEGLRTLDAAGLDVILADGSFSHSGLGAALINRLREAASVRH 362


>gi|119871892|ref|YP_929899.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673300|gb|ABL87556.1| translation factor SUA5 [Pyrobaculum islandicum DSM 4184]
          Length = 349

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 163/327 (49%), Gaps = 17/327 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ +R A E L  G  +A PTETVYGL   + +     ++++ K+RP  NPLI HV  +
Sbjct: 12  DADVIRFAAEVLKRGGIVAAPTETVYGLFTHAYSDGGCAKVFKAKERPPDNPLIVHVDSV 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            M  + A +    + + +  WPGP+TLV+   S   +    TA L T   R P       
Sbjct: 72  EMAAQIAYIPEEIVDVLRRIWPGPITLVMK--SRGAVSRCVTAGLDTVAVRAPAHPIPLA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+    P+A PSAN++G+ S T  +H++   +  E+ +IIDGG +  G+ESTI++V  +
Sbjct: 130 IIKELEAPIAGPSANKAGRPSPTTAEHVV-EDLNGEVDVIIDGGPTFFGVESTIIDVTRK 188

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             + +LRPG   +E L++    VE+        ET    +PGM   HYAP + + +    
Sbjct: 189 PPI-LLRPGPFTVEELEKYFGPVEIPPVARGLIETDVALAPGMKYKHYAPNTPLVIVHFD 247

Query: 243 VNPREALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           ++     +R   + +  +       NA + + +     L E A NL+  ++  D      
Sbjct: 248 LSLAVETLRSKGLKVAVLCATGRCTNADVVIKMGD--DLYEVAKNLYRSLRELDRFSVDI 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRN 323
               ++   G+G+AI NRL +A+  R 
Sbjct: 306 GVVPAVEETGIGLAIMNRLRKASGHRE 332


>gi|330916672|ref|XP_003297514.1| hypothetical protein PTT_07940 [Pyrenophora teres f. teres 0-1]
 gi|311329751|gb|EFQ94374.1| hypothetical protein PTT_07940 [Pyrenophora teres f. teres 0-1]
          Length = 447

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 25/249 (10%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK- 71
           R A E  D   P+A PTETVYGL  D+    A++ ++  K RPA NPLI HV  +  ++ 
Sbjct: 47  RAAKELQDTNNPVAFPTETVYGLGADATRSAAVKEIFARKGRPADNPLIVHVHSLPQLRA 106

Query: 72  ------------KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
                       K A  DP+      + + FWPGP+T++L +   + + P  TA L T  
Sbjct: 107 LLVGKLEAEGDGKIAGKDPIPEIYRPVIECFWPGPITIILPVPKNSILAPEVTAGLSTFG 166

Query: 117 FRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       L+   G PLA PSAN S + S T  +H+    + +++ LIIDGG  ++G
Sbjct: 167 ARMPRSIIALSLLRLCGRPLAAPSANASTRPSPTAAEHV-HDDLREKLDLIIDGGPCEVG 225

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSH 229
           +EST+V+        ILRPGG+ +E L++    E       +   +++S P++PGM   H
Sbjct: 226 VESTVVDGLSSPPA-ILRPGGVTVEQLRQCPGWESVVVGYKDKQAEDSSKPRAPGMKYRH 284

Query: 230 YAPRSQVRL 238
           Y+P++ V L
Sbjct: 285 YSPKASVLL 293


>gi|269860590|ref|XP_002650015.1| hypothetical protein EBI_24439 [Enterocytozoon bieneusi H348]
 gi|220066566|gb|EED44043.1| hypothetical protein EBI_24439 [Enterocytozoon bieneusi H348]
          Length = 334

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 165/313 (52%), Gaps = 24/313 (7%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSL 81
           P+ IPTETVYGLA    N   +  +Y+IK RP+ NPLI H+S+++M+K     ++ P   
Sbjct: 24  PVVIPTETVYGLAGVINNDNILSNIYQIKGRPSDNPLIVHISNLNMLKSLIKETILPEYA 83

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFT-KKLIETYGHPLAIPS 139
            L K +WPGPLTL+    +  ++  +   N + T   R+P      KLI+  G PLA PS
Sbjct: 84  VLIKKYWPGPLTLIFK--ANDNVSNIVKGNHMDTIAIRMPNNSKLLKLIDKLGIPLAAPS 141

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SGQ S T + H+L + +  ++   ID G    GLESTI+++Q   K+ ILRPG +  
Sbjct: 142 ANTSGQPSPTEINHVL-NDLGNKVETYIDDGKCLYGLESTILSMQ-NNKITILRPGIITK 199

Query: 200 ETLKRAISVELEYCVDETSTPQS-PGMLKSHYAPRSQVRL---RAIHVNPREALIRFGNV 255
           E +++ +  +++     ++   + PGM  +HY+P+  V L   +  ++N  +    F N 
Sbjct: 200 EEIEKCLQKQVDLYTKISNINYTIPGMKYTHYSPKIDVYLFIGKDYNINMIKKAQHFKNK 259

Query: 256 PIKNI-ENAIIS--------LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
            I  +  N II           + KT  LKE A N F+ ++   +     I     P   
Sbjct: 260 KIGIMGSNDIIVHGFKYEEIFYMGKT--LKECASNCFSGLR-HFEKKVDLIFIKGFPCID 316

Query: 307 LGIAINNRLERAA 319
            G+A+ +RLE+A+
Sbjct: 317 EGVALMDRLEKAS 329


>gi|239624950|ref|ZP_04667981.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521336|gb|EEQ61202.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 380

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 158/338 (46%), Gaps = 38/338 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +A PTETVYGL  ++ +  A R++Y  K RP+ NPLI H+S  + + 
Sbjct: 46  LAEAAAVLKGGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHISCAAELA 105

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P     L + FWPGPLT++     ++ +   +T  L T   R+P      +LI 
Sbjct: 106 PLVREIPEAGRKLMEAFWPGPLTMIFP--KSSKVPYGTTGGLDTVAVRMPDDPVASRLIA 163

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV+V      
Sbjct: 164 LAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIDMIIDGGPVGIGVESTIVDVSSPVP- 221

Query: 190 RILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPRSQVRL--- 238
            +LRPG + +E L+  +    E  VD        E   P++PGM   HYAP++++ L   
Sbjct: 222 SVLRPGAITMEMLREVLG---EVAVDPAILGPVKEDVKPKAPGMKYRHYAPKAELTLVET 278

Query: 239 --------RAIHVNPREALIRFGNVPIK--------NIENAIISLNLSKTGKLKEAAFNL 282
                     +     E L++   V I           E  + S+   ++   +  A NL
Sbjct: 279 TGPVGRMVEKVKELAHEKLVQGCQVGIICTDESRSCYAEGTVRSIGARES--QESVAHNL 336

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++  DD     I   S     LG AI NRL +AA 
Sbjct: 337 YAVLREFDDLKVEYIFSESFSEDHLGQAIMNRLSKAAG 374


>gi|299747557|ref|XP_002911188.1| YwlC protein [Coprinopsis cinerea okayama7#130]
 gi|298407573|gb|EFI27694.1| YwlC protein [Coprinopsis cinerea okayama7#130]
          Length = 471

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 136/250 (54%), Gaps = 27/250 (10%)

Query: 12  LRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           L++A   L D    +  PTETVYGL   + N  A  +++  K RP  NPLI HVS ++M+
Sbjct: 111 LKQAAHHLCDLHETVVFPTETVYGLGAVATNGDAASKIFSTKGRPPDNPLIVHVSSVTML 170

Query: 71  KKHASVDPLSLH------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           +  + + P  L+      L + FWPG LTL+    + T I  + +A  +T   R+P    
Sbjct: 171 E--SLLPPGYLYPKAYQVLMRHFWPGALTLLFPRNAET-IPSIISAGQQTVAIRMPSHPV 227

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN- 182
            + LI   G PLA PSAN SG+ S T  +H+ +  +  ++PLIIDGG   +GLEST+V+ 
Sbjct: 228 ARALIAVAGKPLAAPSANTSGKPSPTKAEHV-AKDLDGKVPLIIDGGSCGVGLESTVVDG 286

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL-------------EYCVDETST-PQSPGMLKS 228
           +  + ++RILRPGG+ +E ++ A+  E              +Y  +E  T P +PGM   
Sbjct: 287 LHEDGRIRILRPGGITVEQIENALKQEFPEGAAPSVLVHKRDYQDEEMETAPTTPGMKYR 346

Query: 229 HYAPRSQVRL 238
           HY+P   V L
Sbjct: 347 HYSPSVPVTL 356


>gi|330840018|ref|YP_004414598.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC
           35185]
 gi|329747782|gb|AEC01139.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC
           35185]
          Length = 375

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 55/365 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+ +A   L AG  +A PTETVYGL  +  +  A  ++YE K RP+ NPLI H++  +
Sbjct: 11  AAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLILHIAHRA 70

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126
           M+ + A  V  ++ HL   F PGPLTLVL   +   +    T  L T   R+P       
Sbjct: 71  MLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAA--VPDRITGGLATVGVRMPENDAALA 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PLA PSAN SG+ S T  + +L   +   IPLI+DGG  + G+ESTIV+V  E
Sbjct: 129 LIRAAGFPLAAPSANTSGRPSPTTAETVL-EDLAGRIPLILDGGPCRFGVESTIVDVTGE 187

Query: 187 KKVRILRPGGLEIETLKRAIS-VELE--YCVDE--------------------------- 216
             V ILRPG +  E L+  ++ V L+      E                           
Sbjct: 188 AAV-ILRPGAITREMLEEVVADVRLDPGLAAQERAAQMSVGAMCPAAANSAEASETAGMH 246

Query: 217 --TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLN------ 268
              + P++PGM  +HYAPR+ + L A       A  R            +I  +      
Sbjct: 247 TVAAAPRAPGMKYTHYAPRAPLTLLAAPPAALPAAFRAALAEAAGKSVGLIVTDETAAAL 306

Query: 269 -----------LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                      L     ++  A +L+  ++  D+     I   ++   GLG+AI NRL++
Sbjct: 307 AGEAEEDFVVRLGARKDVRSIAAHLYEALRAFDEKKVDFILGEALDESGLGLAIMNRLKK 366

Query: 318 AAAPR 322
           AA  R
Sbjct: 367 AAGYR 371


>gi|262402565|ref|ZP_06079126.1| YrdC family protein [Vibrio sp. RC586]
 gi|262351347|gb|EEZ00480.1| YrdC family protein [Vibrio sp. RC586]
          Length = 321

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 167/328 (50%), Gaps = 18/328 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PL
Sbjct: 4   QQLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPL 62

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A+ +   +  LA+ FWPGPLT++L       + P+ T  L+T   RV
Sbjct: 63  IVHLGSAEQLCEWATDIADEAYQLAQAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRV 120

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLES
Sbjct: 121 PAHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLES 179

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV++   K +R+LR G +    L   +  E L+  V + +    PG + SHY P++  R
Sbjct: 180 TIVDL-TSKPIRVLRAGPITASELSAVLGQEVLQPQVHQVAV---PGNVDSHYQPKT--R 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-----LKEAAFNLFNYMKIADDS 292
           LR I     E   +  +V I  +  +    N  +  K      K     L+  +   D  
Sbjct: 234 LRVIDNVQNEFATQASDVKIALLHLSEQQANEQRLLKPMPQDAKAYGQALYRSLAEVDKW 293

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G   I     P     +A+++RL RAA+
Sbjct: 294 GVDEIWLERPPQGEAWLAVHDRLRRAAS 321


>gi|110597199|ref|ZP_01385488.1| Sua5/YciO/YrdC/YwlC [Chlorobium ferrooxidans DSM 13031]
 gi|110341390|gb|EAT59855.1| Sua5/YciO/YrdC/YwlC [Chlorobium ferrooxidans DSM 13031]
          Length = 315

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/327 (33%), Positives = 162/327 (49%), Gaps = 21/327 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TDS    +A   L++G  +A PTETVYGL     +P AI ++++ K RP  NPL
Sbjct: 1   MQTI-LTDST--EEAARILNSGCVVAFPTETVYGLGACICHPEAIGKIFQAKGRPGDNPL 57

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+ +I  +   AS ++  +  L + F+PGPLTLVL       +  + TA L T   R 
Sbjct: 58  IVHIYNIKQLDDVASEINESAEKLIERFFPGPLTLVLK--KNKSVPDIVTAGLDTVGVRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++ +     P+A PSAN SG  S T+  H +   +   I  I+ G  S IGLES
Sbjct: 116 PANPVAREFLRLACGPVAAPSANLSGLPSSTSW-HAVFKDLDGRISCILKGEESTIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+      V +LR G +  E L+  +  + L     + S P+SPG+   HYAP++ + 
Sbjct: 175 TIVDCSGASPV-LLRAGAITFEALQEVVPGITLNAGTGKESRPKSPGLKYLHYAPKASIV 233

Query: 238 LRAIH----VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           L   H      P  A I     P + +  A   ++  + G+       LF++ ++ D  G
Sbjct: 234 LCTPHEPITAEPDSAYIGLSRPP-EGVRVARHCISPEEYGR------ELFSFFRLCDAEG 286

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I      + G+G AI +RL RAA 
Sbjct: 287 IRVIYCELPSSTGIGRAIRDRLTRAAG 313


>gi|51598986|ref|YP_073174.1| hypothetical protein BG0756 [Borrelia garinii PBi]
 gi|51573557|gb|AAU07582.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 337

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 164/338 (48%), Gaps = 34/338 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  SN ++KA +F+  G  +  PTETVYG+  ++ N  A++ ++ +KKR   NPLI HV
Sbjct: 5   EIIRSNQIQKAAKFIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPLIVHV 64

Query: 65  SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             +  +K+     P S L L K F PGPLT VL    +  I    + NL T   R+P   
Sbjct: 65  DTVKKIKELTEYIPKSALMLIKRFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANK 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIG 175
               LI+    P+A PSAN S + S TN +  L     KE+  ++ G I         IG
Sbjct: 123 IALNLIKASKVPIAAPSANISKRPSATNFEMAL-----KELNGLVRGIIKLEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSH 229
           +EST++    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG +  H
Sbjct: 178 IESTVIGFDLKDNVIILRPGAIT----KKMIEKELKGRYTVNYAETKIELEKSPGNIIEH 233

Query: 230 YAPRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNL 282
           Y P+  V L     N R  L +   + I    + + + +      N++    L+E A NL
Sbjct: 234 YKPKIPVYLFKSQDNIRRYLNKDTKILITKPTLNSYLFNFLWDKKNITVFNTLEEYAQNL 293

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  + I  ++    I    + +  LG +INNR+ +A++
Sbjct: 294 YKEL-IKSENNYKQILSEFVKDEELGYSINNRIRKASS 330


>gi|291460250|ref|ZP_06599640.1| SUA5/YciO/YrdC family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417197|gb|EFE90916.1| SUA5/YciO/YrdC family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 368

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 167/363 (46%), Gaps = 55/363 (15%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +A E +  G  +A PTETVYGL  ++ +P A R++Y  K RP+ NPLI HVS I  
Sbjct: 9   EGIEEAAEIIRRGGLVAFPTETVYGLGGNALSPEAARKIYAAKGRPSDNPLIVHVSGIKD 68

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---CGFTK 125
            +   + +   +  L   FWPGPLTL+L    T  I   ++  L T   R P   C    
Sbjct: 69  AEPLVTEITEDARRLMARFWPGPLTLILR--KTERIPRETSGGLDTVALRCPENACAL-- 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN SG+ S T   H+ +  +   I +I+DGG   IG+ES+I+++  
Sbjct: 125 RLISESGVPIAAPSANLSGKPSPTEAGHV-AKDLGGRIDMILDGGPVGIGVESSILDLST 183

Query: 186 EKKVRILRPGGLEIETLK----RAISVE---LEYCVDETSTPQSPGMLKSHYAPRSQV-- 236
              + +LRPG +  E L     + + ++   L   V ET  P++PGM   HYAP +++  
Sbjct: 184 GTPI-LLRPGAVTAEELSAFLGQKVGIDPAILSGTVSETMHPRAPGMKYRHYAPEAEMYL 242

Query: 237 --------RLRAIHVNPRE-------------------ALIRFGNVPIKNIE-------- 261
                   R  AI    RE                      R G + +K           
Sbjct: 243 VTTRLFRDRGEAIGREERELSDRRTARWIRERAERELSEGKRVGILCVKETRPFYPPDSP 302

Query: 262 NAIISLN-LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  +S+  L    ++     +LF  ++  D+     I   S  + G+G A+ NR+ +AA 
Sbjct: 303 DGTLSVKVLGSREEMLTMTRSLFRLLREFDEEKKDRIYAESCSDRGVGFALMNRMRKAAG 362

Query: 321 PRN 323
            R 
Sbjct: 363 MRE 365


>gi|20093338|ref|NP_619413.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A]
 gi|19918700|gb|AAM07893.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A]
          Length = 360

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 177/359 (49%), Gaps = 51/359 (14%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           ++  +++ N    L +A E +  G  +A PTETVYGL  +  +P A+R+++E K+RP  N
Sbjct: 12  RLFRVSEENFDAVLDEAAEIIRRGGTVAFPTETVYGLGANGLDPEAVRKIFEAKERPPGN 71

Query: 59  PLICHV---SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKT 114
           PL   V    D+  V K+  +   +  L   FWPGPLT+VL+     DI P +++ NL +
Sbjct: 72  PLSLLVHSGEDVGKVAKN--IPEKAFRLMDSFWPGPLTIVLE---KKDIVPEITSGNLPS 126

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P      +L++  G PLA PSAN SG+ S +   H+L + +   I  +IDGG + 
Sbjct: 127 IGLRMPDHRIPLELVKRAGTPLAAPSANLSGKPSPSLAAHVL-ADLTGRIDAVIDGGGTA 185

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQ-SPGMLKSHY 230
           IGLEST+V++  E  V +LRPG + I  L++ I  V   Y   D  + P+   G   +HY
Sbjct: 186 IGLESTVVDMTVEPPV-VLRPGAVGIAELEKVIGKVRPTYGEPDSRAVPEKQAGQKYNHY 244

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENAIIS------------------------ 266
            P +QV L  +  + ++   + G++    +EN++                          
Sbjct: 245 TPDTQVVL--VEGDRKKVSEKIGSL----LENSLREGKKVGFLLSNETAGFFASEGLSAQ 298

Query: 267 --LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF-SSIPNHGLGIAINNRLERAAAPR 322
               L    + +EAA  LF  +++ D      I    S    GLG A+ NRL  AA+ R
Sbjct: 299 ECFLLGSRDEPEEAARRLFEGLRVLDAKSLDVILVDGSFSPSGLGAALLNRLREAASLR 357


>gi|260888151|ref|ZP_05899414.1| SUA5 protein [Selenomonas sputigena ATCC 35185]
 gi|260862180|gb|EEX76680.1| SUA5 protein [Selenomonas sputigena ATCC 35185]
          Length = 377

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 55/365 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+ +A   L AG  +A PTETVYGL  +  +  A  ++YE K RP+ NPLI H++  +
Sbjct: 13  AAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLILHIAHRA 72

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126
           M+ + A  V  ++ HL   F PGPLTLVL   +   +    T  L T   R+P       
Sbjct: 73  MLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAA--VPDRITGGLATVGVRMPENDAALA 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PLA PSAN SG+ S T  + +L   +   IPLI+DGG  + G+ESTIV+V  E
Sbjct: 131 LIRAAGFPLAAPSANTSGRPSPTTAETVL-EDLAGRIPLILDGGPCRFGVESTIVDVTGE 189

Query: 187 KKVRILRPGGLEIETLKRAIS-VELE--YCVDE--------------------------- 216
             V ILRPG +  E L+  ++ V L+      E                           
Sbjct: 190 AAV-ILRPGAITREMLEEVVADVRLDPGLAAQERAAQMSVGAMCPAAANSAEASETAGMH 248

Query: 217 --TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLN------ 268
              + P++PGM  +HYAPR+ + L A       A  R            +I  +      
Sbjct: 249 TVAAAPRAPGMKYTHYAPRAPLTLLAAPPAALPAAFRAALAEAAGKSVGLIVTDETAAAL 308

Query: 269 -----------LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                      L     ++  A +L+  ++  D+     I   ++   GLG+AI NRL++
Sbjct: 309 AGEAEEDFVVRLGARKDVRSIAAHLYEALRAFDEKKVDFILGEALDESGLGLAIMNRLKK 368

Query: 318 AAAPR 322
           AA  R
Sbjct: 369 AAGYR 373


>gi|83746071|ref|ZP_00943126.1| SUA5 protein [Ralstonia solanacearum UW551]
 gi|207742433|ref|YP_002258825.1| translation factor, sua5 type protein [Ralstonia solanacearum
           IPO1609]
 gi|83727254|gb|EAP74377.1| SUA5 protein [Ralstonia solanacearum UW551]
 gi|206593823|emb|CAQ60750.1| translation factor, sua5 type protein [Ralstonia solanacearum
           IPO1609]
          Length = 336

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 18/321 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A   P +++ L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 76  YWADDLPGIAVQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 133

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       E   +++G  + +G+ESTIV++ + 
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGEAIFVLEGDGADVGIESTIVDLSRL 191

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIH 242
           ++ +   +LRPG +  E ++R   V L   + + + P++ G L++HYAPR+ + L  A  
Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVTL--SLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249

Query: 243 VNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAFN-LFNYMKIADDSGASSIAF 299
           V  R A +  G   V +    +     +         A  N L+  ++  D  G  +I  
Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQRAAPATPAAYANTLYALLRELDRGGYHAIWV 309

Query: 300 SSIPNHGLGIAINNRLERAAA 320
            ++P+     A+N+RL RAAA
Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330


>gi|207728037|ref|YP_002256431.1| translation factor, sua5 type protein [Ralstonia solanacearum
           MolK2]
 gi|206591281|emb|CAQ56893.1| translation factor, sua5 type protein [Ralstonia solanacearum
           MolK2]
          Length = 336

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 18/321 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAVRRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A   P +++ L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 76  YWADDLPGIAVQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 133

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       E   +++G  + +G+ESTIV++ + 
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGEAIFVLEGDGADVGIESTIVDLSRL 191

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIH 242
           ++ +   +LRPG +  E ++R   V L   + + + P++ G L++HYAPR+ + L  A  
Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVTL--SLPDAAAPRASGTLRAHYAPRTPLYLLAATD 249

Query: 243 VNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAFN-LFNYMKIADDSGASSIAF 299
           V  R A +  G   V +    +     +         A  N L+  ++  D  G  +I  
Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQRAAPATPAAYANTLYALLRELDRGGYHAIWV 309

Query: 300 SSIPNHGLGIAINNRLERAAA 320
            ++P+     A+N+RL RAAA
Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330


>gi|149927700|ref|ZP_01915952.1| Sua5/YciO/YrdC/YwlC [Limnobacter sp. MED105]
 gi|149823526|gb|EDM82756.1| Sua5/YciO/YrdC/YwlC [Limnobacter sp. MED105]
          Length = 333

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 173/347 (49%), Gaps = 45/347 (12%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++++ +D+N +++  + L  G  +A PTETV+GL        AI+ +++ K RP  +PLI
Sbjct: 4   ELLAASDAN-IQRCAQALQNGQLVAFPTETVFGLGAAVSRLDAIQGIFKAKGRPTEHPLI 62

Query: 62  CHVS-DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV 119
            HV+   ++V   A + P    L   FWPGPLTLV   +   +  P   T    +   R 
Sbjct: 63  AHVAPGANLVGWVAELTPTMQKLMNAFWPGPLTLV---VPKGERMPFEVTGGQNSVGIRC 119

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      KL++  G P+A PSANR G++S T   H+L + +   IP I+DG + ++G+ES
Sbjct: 120 PSHPVAIKLLKATGVPVAAPSANRFGKVSPTRASHVL-AELGDRIPFILDGDVPEVGIES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS----PGMLKSHYAPRS 234
           TIV++  E++  ILRPG +    ++  + V ++  V+ + TP +     G L+ HY+P +
Sbjct: 179 TIVSL-LEEQPAILRPGAITAAQIEAVLGVPVKSHVEVSKTPHANPRVSGALEKHYSPDA 237

Query: 235 QV------RLRAIHVNPREALI---------------RFGNVPIKNIENAIISLNLSKTG 273
           +V       L A+ +  +   +               +FG V ++ + +           
Sbjct: 238 KVWVLQASELAALQLQNKTLCVGWTDEFLAQADALREKFGEVLVEALSD----------- 286

Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           K  E A  L+  ++ AD+     + F     +    A+N+RL+RA+A
Sbjct: 287 KPAEVAKALYATLRQADELACKQLLFERPGQNQEWEAVNDRLKRASA 333


>gi|145220275|ref|YP_001130984.1| translation factor SUA5 [Prosthecochloris vibrioformis DSM 265]
 gi|145206439|gb|ABP37482.1| translation factor SUA5 [Chlorobium phaeovibrioides DSM 265]
          Length = 316

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/323 (33%), Positives = 161/323 (49%), Gaps = 21/323 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS    +A   L+ G  +A PTETVYGL     +P A+  ++  K RP  NPLI H+ 
Sbjct: 5   ITDSPL--EAAAILNEGKTVAFPTETVYGLGAAIDSPEALAEVFRAKGRPGDNPLIVHIG 62

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               + + AS + P +  L   F+PGPLTLVL    ++++    TA L T   R P    
Sbjct: 63  TPEELPRVASKLSPEAGLLVTRFFPGPLTLVLP--KSSEVPYAVTAGLDTVGVRCPAHPA 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             + ++    P+A PSANRSG+ S T+ + +  + +  +I  I+ G  S+IGLESTIV+ 
Sbjct: 121 AHEFLKCCHSPVAAPSANRSGRPSATSWEAV-HNDLDGKIAAILRGNTSRIGLESTIVDC 179

Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
              + + +LR G + +E L+  + S+       +   P+SPG+   HYAPR++V      
Sbjct: 180 TGPRPL-MLRAGAVTLEELQAIVPSITPAGETQKNEAPKSPGLKYPHYAPRARVVTHERG 238

Query: 243 VNP-----REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
            +P       A I  G  P+      I    L  T   +E A  LF++ +  D     +I
Sbjct: 239 ESPAAIPSASAWIGLGTPPV-----GIALAKLCTT--HEEYARELFSFFRHCDREAIQTI 291

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P  GLG AI +RL RAA 
Sbjct: 292 YCELPPEKGLGRAIRDRLNRAAG 314


>gi|224532051|ref|ZP_03672683.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia valaisiana VS116]
 gi|224511516|gb|EEF81922.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia valaisiana VS116]
          Length = 335

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 167/336 (49%), Gaps = 28/336 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IIRSNQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P    
Sbjct: 66  TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLNTVAIRIPANKI 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--------IG 175
              LI+    P+  PSAN S + S TN +  L     KE+  ++ GGI K        IG
Sbjct: 124 ALNLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLV-GGIIKTTENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST--PQSPGMLKSHYAPR 233
           +EST++    +  V ILRPG +  + +++ +  +      ET+    +SPG +  HY P+
Sbjct: 178 IESTVIGFDLKDNVLILRPGAITKKMIEKELQGQYTVSYAETTIELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKSTLKSYLFNFLWDKKNITIFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+ +A++ R
Sbjct: 298 -VNSENNYKKILSEFVKDEELGYSINNRIRKASSNR 332


>gi|163857906|ref|YP_001632204.1| putative translation factor [Bordetella petrii DSM 12804]
 gi|163261634|emb|CAP43936.1| putative translation factor [Bordetella petrii]
          Length = 352

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 173/355 (48%), Gaps = 60/355 (16%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++ D+ A+ +A E L AG  +A PTETVYGL  D++NP A+ R+Y  K RP+ +P+I HV
Sbjct: 7   ALPDAAAIARAAERLLAGELVAFPTETVYGLGADAQNPEAVARIYAAKGRPSNHPVIVHV 66

Query: 65  ---SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI---------------HP 106
              +D+    +  ++ P +  L   FWPGPLTL+L                       HP
Sbjct: 67  APGADLGYWVR--NISPAARQLIDAFWPGPLTLILPRAPHAGAAVSGGQDSIGLRCPSHP 124

Query: 107 LSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEI 163
           ++ A L+      P G            +A PSAN+ G +S T  +H+       + + +
Sbjct: 125 VAQALLRAFAAGKPGGHGG---------VAAPSANKFGHVSPTRAEHVRGEFPQEVAQGM 175

Query: 164 PLIIDGGISKIGLESTIVNV-QCEKKVR--ILRPGGL---EIETLKRAISVELEYCVDET 217
           P ++DGG +++G+ESTIV++ + E+ V   +LRPG +   +IE +     +++   + + 
Sbjct: 176 P-VLDGGPAQVGIESTIVDLSRLEQGVGPVLLRPGHVTPAQIEAV-----LDMPVAMPDA 229

Query: 218 STPQSPGMLKSHYAPRSQVRL------------RAIHVNPREALIRFGNVPIKNIENAII 265
           + P++ G LK+HYAP + + L            R +    R A++ FG  P +       
Sbjct: 230 AAPRASGTLKAHYAPHTPLELMTTQHLMDAARGRGLPAG-RVAIVAFGAAPAELDARVAW 288

Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                  G+  +A   L+  ++  D  G + I   + P      A+N+R+ RAAA
Sbjct: 289 RQVPDDAGRYAQA---LYTMLRDLDGGGYARILVQAPPADDAWRAVNDRIGRAAA 340


>gi|146307051|ref|YP_001187516.1| translation factor SUA5 [Pseudomonas mendocina ymp]
 gi|145575252|gb|ABP84784.1| translation factor SUA5 [Pseudomonas mendocina ymp]
          Length = 339

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 8/223 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L +G  +A+PTETVYGLA D+RN  A+ +++++K+RP  NPLI H++D S   
Sbjct: 31  LDRCVQQLRSGNLLAMPTETVYGLAADARNGEAVAKVFQLKQRPDSNPLIVHLADASQAS 90

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             AS  P     L    WPGPLTLVL   +  D+    TA   +   RVP     + L++
Sbjct: 91  NWASHIPAQAQVLMDACWPGPLTLVLP--ARDDVLRSVTAGQDSVALRVPAHPVARALLQ 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G  L  PSANR   IS T+  H+       E+ LI+DGG  ++GLES+IV++      
Sbjct: 149 AFGDGLVAPSANRYMSISPTSAAHVARQFAESEL-LILDGGACQVGLESSIVSLLPGDSP 207

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
           R+LR G L    L++ +   LE   +   + ++PG  + HYAP
Sbjct: 208 RLLRHGMLGQARLEQVLGQALE---NRPGSVRAPGQCRRHYAP 247


>gi|71421441|ref|XP_811801.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876508|gb|EAN89950.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 384

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 178/371 (47%), Gaps = 59/371 (15%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++ L KA + L  G  +AIPTETVYGL  ++ N  A+ +++ +K RP  +PLICHVS
Sbjct: 4   IISASELEKAADALARGNLVAIPTETVYGLGGNALNKEAVEKIFIVKGRPLTDPLICHVS 63

Query: 66  DI--SMVKKHASVDPLSLHLAKLF----WPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118
           D+  +M       DP ++ LA++     WPGPLT+V   L    + P S T        R
Sbjct: 64  DVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIV---LRANPLLPNSVTGGSGFVGAR 120

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGL 176
           +P    T +L++    P+A PSAN  G +S T   H+L     K+   LI+DGG   IG+
Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKDLGPKDSSLLIVDGGPCDIGI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST------PQ----SPGML 226
           EST+V V   + V ILR GG+ +  + RA+  +    +    T      P+     PG L
Sbjct: 181 ESTVVKVNNVESVEILRRGGVTLTEVLRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQL 240

Query: 227 KSHYAPRSQVRLRA-------IHVNPREALIRFGN-----VPIKNI--ENAIISL----- 267
            +HY+P    RL         + ++P  AL+ F +      P + +     II       
Sbjct: 241 LTHYSPNVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKLQ 300

Query: 268 ----------NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGI 309
                     +LS   +++EA F +F+ ++  +   GA  + F   S  P    +  L  
Sbjct: 301 CLKPGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSGWPHASVDTDLLA 360

Query: 310 AINNRLERAAA 320
           A+ +RL RAA+
Sbjct: 361 AVEDRLFRAAS 371


>gi|297170862|gb|ADI21881.1| putative translation factor (SUA5) [uncultured verrucomicrobium
           HF0130_25O04]
          Length = 325

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 163/316 (51%), Gaps = 22/316 (6%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A+PTETVYGLA  + +  A+++++E+K+RP  NPLI HV D    ++ A V+  +
Sbjct: 15  GGEVVALPTETVYGLACLALDEKAVKKVFELKERPPTNPLIVHVLDSRQAEQIAHVNSFA 74

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
             L + FWPGPLTL+   L    + P S TA L T   R P     +K+++    P+A P
Sbjct: 75  KLLCQKFWPGPLTLI---LPKRQMIPDSVTAGLDTVAVRSPSHPLFRKILQEAEQPIAAP 131

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN    +S T  + +   S  +  P I+DGG   IGLEST++++  +    ILRPG + 
Sbjct: 132 SANLFSMVSSTTPQEVF-DSFGEACPPILDGGKCNIGLESTVLDLTSDTP-SILRPGPIS 189

Query: 199 IETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR----AIHVNPREALIR 251
            E L+  +  E+   +   D     +SPG+   HY+  + +RL     AI    R     
Sbjct: 190 KEELEEFLGFEISNPKKNTDSRVARKSPGLSAKHYSTETPIRLHENISAIQQIERWTADD 249

Query: 252 FGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN- 304
              +P K++      E A I +  S TG  ++ A NL+  +K AD      I  + +   
Sbjct: 250 LIILPCKDLIVGFDSEPATI-ITFSATGNTQDIAHNLYATLKEADQLEKKLIHLALLEET 308

Query: 305 HGLGIAINNRLERAAA 320
            GL  A+N+RL RA++
Sbjct: 309 DGLARAVNDRLTRASS 324


>gi|13542129|ref|NP_111817.1| translation factor (SUA5-related) [Thermoplasma volcanium GSS1]
 gi|14325560|dbj|BAB60463.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 361

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 17/322 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L  A E L  G  +  PTETVYGL  ++ N  A ++++  K RP+ NPLI H+SD+  
Sbjct: 15  DDLYYAVEALKHGGTVVFPTETVYGLGANAMNDEACKKIFIAKGRPSDNPLIVHISDMDQ 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           ++  + +V      + K  WPGPLT+V++      I    TA L T   R+P     + L
Sbjct: 75  LENFSKNVKEEYKAILKELWPGPLTVVVE--KANGIPDTVTAKLPTVAIRMPDDSIARNL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN S + SIT+ K  +   +   + +IID G  K G+ESTI+++  + 
Sbjct: 133 IDMAG-PIAAPSANISTKPSITDSKDAI-RFLDGRVDVIIDAGKVKFGIESTIIDL-TQD 189

Query: 188 KVRILRPGGLEIETLK---RAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL---RA 240
            VR+LRPG   +E L+     I+V+ +     E     +PGM   HY+P  ++ L   R 
Sbjct: 190 PVRLLRPGAFSVEDLEPLFGKITVDKVALGKAEAKVAITPGMKYRHYSPNKKIFLCKDRE 249

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           +  + +E L   G +      +  IS N   + +   L   A NLF+     DDS  +  
Sbjct: 250 VVESLKEELPNNGVLMCTEEVSQGISTNKIIVGRDSDLYSVAHNLFSSFIELDDSSYNYG 309

Query: 298 AFSSIPNHGLGIAINNRLERAA 319
                   G+G+AI NR+ +A+
Sbjct: 310 VIIPFEEKGIGLAIMNRIRKAS 331


>gi|322824288|gb|EFZ29735.1| hypothetical protein TCSYLVIO_3990 [Trypanosoma cruzi]
          Length = 384

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 178/371 (47%), Gaps = 59/371 (15%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++ L +A + L  G  +AIPTETVYGL  ++ N  A+ +++ +K RP  +PLICHVS
Sbjct: 4   IISASELERAADALARGNLVAIPTETVYGLGGNALNKEAVEKIFTVKGRPLTDPLICHVS 63

Query: 66  DI--SMVKKHASVDPLSLHLAKLF----WPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118
           D+  +M       DP ++ LA++     WPGPLT+V   L    + P S T        R
Sbjct: 64  DVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIV---LRANPLLPNSVTGGSGFVGAR 120

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGL 176
           +P    T +L++    P+A PSAN  G +S T   H+L     K+   LI+DGG   IG+
Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKDLGPKDSSLLIVDGGPCDIGI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST------PQ----SPGML 226
           EST+V V   + V ILR GG+ +  + RA+  +    +    T      P+     PG L
Sbjct: 181 ESTVVKVNNVESVEILRRGGVTLTEVLRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQL 240

Query: 227 KSHYAPRSQVRLRA-------IHVNPREALIRFGN-----VPIKNI--ENAIISL----- 267
            +HY+P    RL         + ++P  AL+ F +      P + +     II       
Sbjct: 241 LTHYSPSVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKLQ 300

Query: 268 ----------NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGI 309
                     +LS   +++EA F +F+ ++  +   GA  + F   S  P    +  L  
Sbjct: 301 CLKPGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSGWPHASVDTDLLA 360

Query: 310 AINNRLERAAA 320
           A+ +RL RAA+
Sbjct: 361 AVEDRLFRAAS 371


>gi|218883353|ref|YP_002427735.1| Putative translation factor [Desulfurococcus kamchatkensis 1221n]
 gi|218764969|gb|ACL10368.1| Putative translation factor [Desulfurococcus kamchatkensis 1221n]
          Length = 359

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 161/333 (48%), Gaps = 35/333 (10%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L+ G+ +A PTETVYGL        A+ ++++ K RP  NPLI H+S + M+++ A   
Sbjct: 27  LLNKGI-VAFPTETVYGLGAVIYYEDAVEKIFKAKMRPPDNPLIIHISTLDMLEEVALNI 85

Query: 78  PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGHPL 135
           P   + L   FWPGPLTL+L       +  + T  L T   R+P   T  +LI   G+P+
Sbjct: 86  PEDAYSLINRFWPGPLTLILP--RNPRVPKIVTGGLDTIAVRMPGHPTALELINVVGYPI 143

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+ S    +H++   +   I  IID G +  G+EST+VN+  E    +LRPG
Sbjct: 144 AAPSANLSGRPSPVTAEHVI-RDLMGRIDAIIDAGETFFGVESTVVNI-LEDPPTLLRPG 201

Query: 196 GLEIE----TLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL------------ 238
              +E     L R I++ +    +  +    +PGM   HY+P +++ L            
Sbjct: 202 AYPVEEIEKVLGRKIAIPDFARGLKYSEVALAPGMKYRHYSPEAKLILVESVTNDYSVIA 261

Query: 239 -------RAIHVNPREALIRFGNVP----IKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                  R I V+    +    ++      + +E     L +     L E A NLF  ++
Sbjct: 262 NKIIEAARDISVSTNSDICIVSSIETSSYYRKLEKVKAVLIIGSRRNLYEVAKNLFKILR 321

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             D+ G  ++     P  G+G+A+ NRL +A++
Sbjct: 322 DVDNIGCKTVFVEGFPETGIGLAVMNRLRKASS 354


>gi|331251224|ref|XP_003338212.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309317202|gb|EFP93793.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 444

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 32/241 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD---PLSL 81
           +A PTETVYGL   + + TA+ ++++ K RP+ NPLI HVS ++++K     D   P + 
Sbjct: 68  VAFPTETVYGLGASALSSTAVSKIFKAKGRPSDNPLIVHVSSLNLLKTFVPPDWNFPATY 127

Query: 82  H-LAKLFWPGPLTLVLDLLSTTDIHP------LSTANLKTACFRVPC-GFTKKLIETYGH 133
             L + FWPGPLTL++   +T+ + P      L T  L T   R+P    ++ LI   G 
Sbjct: 128 QALIERFWPGPLTLLVP--TTSPVQPNCPISNLVTCGLPTVAVRMPAHSISRALIAESGV 185

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN-VQCEKKVRIL 192
           P+A PSAN SG+ S T  +H+    +  +IP+IIDGG  ++G+EST+V+ +  + +VRIL
Sbjct: 186 PIAAPSANLSGRPSPTTAQHV-ERDMKTKIPMIIDGGACQVGVESTVVDGLNPDGRVRIL 244

Query: 193 RPGGLEIETLKRAI----------------SVELEYCVDE-TSTPQSPGMLKSHYAPRSQ 235
           R GGL +E ++  +                    +Y   E  + P +PGM   HYAP ++
Sbjct: 245 RLGGLSVEDIEACLIEAGLNLSDGKPILAGVYNQDYRDKELEAKPTTPGMKYKHYAPHAK 304

Query: 236 V 236
           V
Sbjct: 305 V 305


>gi|254582671|ref|XP_002499067.1| ZYRO0E02882p [Zygosaccharomyces rouxii]
 gi|238942641|emb|CAR30812.1| ZYRO0E02882p [Zygosaccharomyces rouxii]
          Length = 414

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 179/369 (48%), Gaps = 58/369 (15%)

Query: 6   ITDSNALRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           I++ N L +A + +   L P+A PTETVYGL   S +  A++ +Y  K RP+ NPLI HV
Sbjct: 44  ISEKNLL-EAAKIIRGNLEPVAFPTETVYGLGGSSLSDEAVKSIYRAKNRPSDNPLITHV 102

Query: 65  SDISMV------KKHASVD---PLSLH-LAKLFWPGPLTLVLDL-LSTTDIHPLSTANLK 113
           S I  +      +KH+S+    P S H L    WPGPLT++L + L T+ +  L+TA+  
Sbjct: 103 SSIDQLNRKIYQEKHSSLFQNIPNSYHPLISKLWPGPLTILLPVPLKTSALSKLTTADQP 162

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P     + LI     P+A PSAN S + S T   H+    +   IPLI+DGG  
Sbjct: 163 TFAVRIPSNPIARALIALSDTPIAAPSANASTRPSPTMASHVY-HDLKGRIPLILDGGPC 221

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVDETSTPQSPGM 225
           K+G+EST+V+    K   +LRPGG   E +        +   VE    V E    ++PGM
Sbjct: 222 KVGVESTVVD-GLSKPPLLLRPGGFTYEQIVELGGQDWKDCRVERRKVVAEGEQVRTPGM 280

Query: 226 LKSHYAPRSQVRL-----RAIHVNPREALIRFGNVPIKNIENA--------IISLNLSKT 272
              HYAP ++V L     +    +  E L R  +  ++N E+A        + SL+L  T
Sbjct: 281 KYKHYAPSAKVILLVPKPQRTDSDRIEELKRLISQELQN-EDANTIKKLAILTSLHLGAT 339

Query: 273 ---------GKLK-----------EAAFNLFNYMKIADDSGASSIAF-SSIPNHGLGIAI 311
                     K+K           E   NLF  ++  D+    ++ F   I     G+AI
Sbjct: 340 EIQDLTVGDSKIKPIVVKLGNTGEEIQANLFAALRQVDEIDNVNLIFVEGISEDREGLAI 399

Query: 312 NNRLERAAA 320
            NRL +AA 
Sbjct: 400 MNRLRKAAG 408


>gi|225551793|ref|ZP_03772736.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia sp. SV1]
 gi|225371588|gb|EEH01015.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia sp. SV1]
          Length = 337

 Score =  133 bits (334), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P   T
Sbjct: 66  TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    PL  PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALSLIKASKVPLVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230
           EST+V    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG +  HY
Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKIELEKSPGNIIEHY 234

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283
            P+  V L     N R  L +   + I    +++ + +      N++    L+E A NL+
Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLY 294

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             + +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|305662754|ref|YP_003859042.1| translation factor SUA5 [Ignisphaera aggregans DSM 17230]
 gi|304377323|gb|ADM27162.1| translation factor SUA5 [Ignisphaera aggregans DSM 17230]
          Length = 359

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 168/343 (48%), Gaps = 33/343 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + + C+ +  G  I  PTETVYGL     N  A+R+++  K RP  NPLI H+S I
Sbjct: 15  DEDIIDRCCKAILNGAIIVFPTETVYGLGAYVYNVEAVRKIFIAKSRPMDNPLIVHISKI 74

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + + A   P  ++ +A+ FWPGPLT++L       +    +  L T   R+P      
Sbjct: 75  DQLYEIAIDVPEIVNIIAENFWPGPLTILLR--KNRSVPKEVSGGLDTVAVRMPAHPVAL 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI+  G P+A PSAN SG+ S T+  H+L     +   +I+D G +  G+ESTI+++  
Sbjct: 133 KLIDCSG-PIAAPSANISGRPSPTSPYHVLVDMFGRA-DIILDAGETFFGVESTIIDILS 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPR------- 233
           +   ++LRPG + IE ++  ++  +E  V      E+    +PGM   HYAP+       
Sbjct: 191 DPP-KLLRPGAMPIEKIEEVLNKRIEIPVFALGYKESEKALAPGMKYKHYAPKTPLIIAK 249

Query: 234 ----SQVRLRAIHVN--PREALIRFGNVP-IKNIENAIISLNLS-------KTGKLKEAA 279
               +  R  A  V     + + R  N+  + + E A I ++L+           L E A
Sbjct: 250 SRDYTDCRRYAEKVKKIAMDLIARGRNIAVVASTETADIYIDLNIKIFVLGSRKNLFEIA 309

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            NLF  ++  D SG         P  G+GI I NRL +A+  R
Sbjct: 310 KNLFGVLRELDRSGVDMAIVEGYPEKGIGITIMNRLIKASGYR 352


>gi|189347477|ref|YP_001944006.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium limicola DSM 245]
 gi|189341624|gb|ACD91027.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium limicola DSM 245]
          Length = 319

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 163/331 (49%), Gaps = 21/331 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TDS    +A   L+ G  +A PTETVYGL     +  AI R++  K RP  NPL
Sbjct: 1   MQTV-VTDSP--EEAARCLNEGGVVAFPTETVYGLGAAICHTEAIERIFAAKGRPGDNPL 57

Query: 61  ICHVS---DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I H++   D+  V  H S D   L L   F+PGPLTLVL     + +    TA L T   
Sbjct: 58  IVHIADPGDLMKVASHVSSDAKKLVLH--FFPGPLTLVLK--KNSSVPDSVTAGLDTVGV 113

Query: 118 RVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R P        ++    P+A PSAN SG+ S T+   +L   +  +I  I+ G  S IGL
Sbjct: 114 RCPSNSDATAFLKRCRCPVAAPSANVSGRPSSTSWDAVL-HDLDGKIDCILKGAPSDIGL 172

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ESTIV+   E  + +LR G + IE L+  + S+     + +   P+SPG+   HYAP ++
Sbjct: 173 ESTIVDCSGETPL-LLRTGAVTIENLREVVPSIRTADSLRQHEIPKSPGLKYPHYAPEAR 231

Query: 236 VRL----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           + L      I  +  +    +  + +   E   +   +     ++E A  LF++ ++ D 
Sbjct: 232 IVLLGAGERIDADSEQRTSAYIGLSLPAAEQFAL---VKHCCNIEEYARVLFDFFRLCDS 288

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
              S I     P  GLG A+ +RL RAAA R
Sbjct: 289 RKISFIYCELPPAEGLGRAVGDRLSRAAAGR 319


>gi|111115564|ref|YP_710182.1| hypothetical protein BAPKO_0778 [Borrelia afzelii PKo]
 gi|216263452|ref|ZP_03435447.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia afzelii
           ACA-1]
 gi|110890838|gb|ABH02006.1| hypothetical protein BAPKO_0778 [Borrelia afzelii PKo]
 gi|215980296|gb|EEC21117.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia afzelii
           ACA-1]
          Length = 334

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 166/344 (48%), Gaps = 34/344 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M +  I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MILTEIIHSNQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPIENPL 60

Query: 61  ICHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P S L L K F PGPLT V     +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKRFSPGPLTYVFK--KSIKISRFVSGNLDTVAIRI 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS------ 172
           P       LI+T   P+  PSAN S + S T+ +  L     KE+  ++ G I       
Sbjct: 119 PANKIALNLIKTSKVPIVAPSANISKRPSSTSFEMAL-----KELNGLVKGIIKTEKTKD 173

Query: 173 -KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGM 225
             IG+EST++    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG 
Sbjct: 174 FNIGIESTVIGFDLKDNVLILRPGAIT----KKMIEKELQGKYTVNYAETKIELEKSPGN 229

Query: 226 LKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEA 278
           +  HY P+  V L     N R  L +   + I    +++ + +      N+     L+E 
Sbjct: 230 IIEHYKPKIPVYLFKSQDNIRRYLNKDTKILITKPTLKSYLFNFLWDKKNIKVFNTLEEY 289

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           A NL+  + +  +     I    + +  LG +INNR+ +A++ R
Sbjct: 290 AQNLYKEL-VNSEKDYKQILSEFVKDEELGYSINNRIRKASSNR 332


>gi|71416654|ref|XP_810332.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874846|gb|EAN88481.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 384

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 177/371 (47%), Gaps = 59/371 (15%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++ L KA   L  G  +AIPTETVYGL  ++ N  A+ +++ +K RP  +PLICHVS
Sbjct: 4   IISASELEKAAGALARGNLVAIPTETVYGLGGNALNKEAVEKIFTVKGRPLTDPLICHVS 63

Query: 66  DI--SMVKKHASVDPLSLHLAKLF----WPGPLTLVLDLLSTTDIHPLS-TANLKTACFR 118
           D+  +M       DP ++ LA++     WPGPLT+V   L    + P S T        R
Sbjct: 64  DVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIV---LRANPLLPNSVTGGSGFVGAR 120

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGL 176
           +P    T +L++    P+A PSAN  G +S T   H+L     K+   LI+DGG   IG+
Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKDLGPKDSSLLIVDGGPCDIGI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST------PQ----SPGML 226
           EST+V V   + V ILR GG+ +  ++RA+  +    +    T      P+     PG L
Sbjct: 181 ESTVVKVNNVESVEILRRGGVTLTEVQRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQL 240

Query: 227 KSHYAPRSQVRLRA-------IHVNPREALIRFGN-----VPIKNI--ENAIISL----- 267
             HY+P    RL         + ++P  AL+ F +      P + +     II       
Sbjct: 241 LMHYSPSVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKLH 300

Query: 268 ----------NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIP----NHGLGI 309
                     +LS   +++EA F +F+ ++  +   GA  + F   S  P    +  L  
Sbjct: 301 CLKSGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSEWPHASVDTDLLA 360

Query: 310 AINNRLERAAA 320
           A+ +RL RAA+
Sbjct: 361 AVEDRLFRAAS 371


>gi|188587452|ref|YP_001918997.1| Sua5/YciO/YrdC/YwlC family protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179352139|gb|ACB86409.1| Sua5/YciO/YrdC/YwlC family protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 367

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 168/364 (46%), Gaps = 66/364 (18%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A   +     +A PTETVYGL  +  +P AI+++++ K RP  NP+I H+  +
Sbjct: 13  DKTIIKQAAGIVRQNGLVAFPTETVYGLGGNGLSPAAIQKIFQAKNRPLDNPVILHLHSV 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVP-CGFTK 125
           + V+           LA+ FWPGPLT++   +   +I P  ++  L T   R+P      
Sbjct: 73  NQVETLGFPPEEFFFLAEKFWPGPLTMI---IPKKNIVPREASGGLDTVAVRMPDHNVAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    P+A PSAN SG+ S T   H+    +   I +IIDGG + +GLEST++++  
Sbjct: 130 ALIQEAQVPMAAPSANLSGRPSPTTAAHV-ELDLSGRIDMIIDGGTTGVGLESTVIDL-S 187

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD--------------------------ETST 219
           EK  ++LRPGG+  E L  A    L+YC D                          + ++
Sbjct: 188 EKPYQVLRPGGITAEQLASA----LDYCQDTFLYTGSEEDYYAEGNQSSCDEMITKDKNS 243

Query: 220 PQSPGMLKSHYAPRSQVRL------RAIHVNPREALIRFGNVPIK--------------- 258
            +SPG+   HY+P+ ++ L      + +H      +  + N   K               
Sbjct: 244 IKSPGVKYRHYSPQGELYLVEGSGHKLLH-----KMYEYANDFSKQGYRIGILLTNELLE 298

Query: 259 ---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
              N+        L    +L E A +L++ ++  D  G   I   +    G+G+A+ NRL
Sbjct: 299 EDGNLHKFCYVRRLGNEDQLTEVAHSLYDALREMDQQGIEIILCRTFSPKGIGVALMNRL 358

Query: 316 ERAA 319
            +A+
Sbjct: 359 LKAS 362


>gi|297620333|ref|YP_003708470.1| Sua5/YciO/YrdC/YwlC family protein [Waddlia chondrophila WSU
           86-1044]
 gi|297375634|gb|ADI37464.1| Sua5/YciO/YrdC/YwlC family protein [Waddlia chondrophila WSU
           86-1044]
          Length = 307

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 161/315 (51%), Gaps = 24/315 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R+A   L +G  +A+PTETVYGLA   + P AI++++ +K RP+ NPLI HV  I  +  
Sbjct: 6   RQAIRMLLSGEVVALPTETVYGLAASLKFPEAIKKIFSLKGRPSDNPLIVHVGKIEQLSS 65

Query: 73  HASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPC-GFTKKLIE 129
           + +  P     LA+ FWPG LTL++D  +  ++ P +  A L T   R+P    T++++E
Sbjct: 66  YVTTFPPGFESLAEAFWPGALTLIID--ANKEMVPEAVRAGLSTVAVRIPSHAKTRQVLE 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  L +PSAN SG+ S T  +H++     ++   ++DGG  + G+ESTI+  +  + V
Sbjct: 124 ETG-ALVMPSANLSGRPSATTAQHVIDD--FQDAAPVLDGGKCQQGVESTIMIFRDTRWV 180

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            I R G +  E +   +    ++  + T+ P  PG    HYAP +   L+ +  +    +
Sbjct: 181 -IAREGAVTAEEIALVLGYAPDFS-ERTAKPICPGQHYKHYAPNAV--LKPLGKDQTGVV 236

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKE---AAFNLFNYMKIADDSGASSIAF--SSIPN 304
           I F +    +      S  L   G L E    A NL++ ++  D  G    AF     PN
Sbjct: 237 IGFSDRKYPH------STALYILGDLSEPEIVAGNLYSVLRALDTDGVQE-AFIDWDFPN 289

Query: 305 HGLGIAINNRLERAA 319
            GL   I  RL +A+
Sbjct: 290 EGLWRTIRERLRKAS 304


>gi|21674532|ref|NP_662597.1| SUA5/YciO/YrdC family protein [Chlorobium tepidum TLS]
 gi|21647726|gb|AAM72939.1| SUA5/yciO/yrdC family protein [Chlorobium tepidum TLS]
          Length = 323

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 157/323 (48%), Gaps = 12/323 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TD     +A  +L+    +A PTETVYGL  D+ NP A+ ++++ K RP+ NPL
Sbjct: 1   MQTL-VTDRP--EEAASWLNRSETVAFPTETVYGLGADAFNPDAVAKIFKAKGRPSDNPL 57

Query: 61  ICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    + +  A +   +  L + F+PGPLTLVL   +   +  + +A L T   R 
Sbjct: 58  IVHVATPEQIGEVAAEIGETAKILVERFFPGPLTLVLKKRAA--VPEIVSAGLPTIGVRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      + +    HP+A PSAN SG+ S T+ K +    +  +I  ++ G  S IGLES
Sbjct: 116 PSHPIASEFLRHCKHPVAAPSANVSGRPSPTDWKTVY-HDLGGKIACLLRGEPSTIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+       R+LR G + IE L+  +  +E+         P+SPG    HY+P +++ 
Sbjct: 175 TIVDCSVNPP-RLLRTGAVSIELLRELVPDIEIATACKPGEAPKSPGQKYRHYSPEAEII 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L  +   P           I        +    +   + E A  LF + +  D  G  +I
Sbjct: 234 L--VESPPSNLQTDLHAAWIGLAAPPAGAAKSLQCRDMDEYARVLFGFFRTCDAEGIRTI 291

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P  G+G AI +RL +AA 
Sbjct: 292 YCELPPEKGIGRAIRDRLVKAAG 314


>gi|165760855|pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From
           Sulfolobus Tokodaii
          Length = 352

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 154/326 (47%), Gaps = 19/326 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++ A + +  G  +A PTETVYGL  ++ +  A  ++++ K RP  NPLI H++D + 
Sbjct: 15  DKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQ 74

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A   P   L +A++ WPGPLT VL    T  +    TA L T   R P      +L
Sbjct: 75  LFEVAKDIPDKVLEIAQIVWPGPLTFVLK--KTERVPKEVTAGLDTVAVRXPAHPIALQL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN + + S T  + ++   +   + +IIDGG +  G+ESTI+NV  E 
Sbjct: 133 IRESGVPIAAPSANLATRPSPTKAEDVI-VDLNGRVDVIIDGGHTFFGVESTIINVTVEP 191

Query: 188 KVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRL---RA 240
            V +LRPG   IE LK+        E      E     +PG    HYAP +++ L   R 
Sbjct: 192 PV-LLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGXKYKHYAPNTRLLLVENRN 250

Query: 241 IHVNPREALIRFGNVPI---KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGA 294
           I  +    L +   V +   K +      L    L     L E A NLF+  +  D    
Sbjct: 251 IFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNV 310

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
                   P  G+G AI NR  +A+ 
Sbjct: 311 DLGIXIGFPERGIGFAIXNRARKASG 336


>gi|302348551|ref|YP_003816189.1| Putative translation factor (SUA5) [Acidilobus saccharovorans
           345-15]
 gi|302328963|gb|ADL19158.1| Putative translation factor (SUA5) [Acidilobus saccharovorans
           345-15]
          Length = 361

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 156/324 (48%), Gaps = 32/324 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           +A PTETVYGL  D+ NP A+++++  K+RP  NPLI H+  ++ + + A  + P +  L
Sbjct: 36  VAFPTETVYGLGADTYNPEAVKKVFIAKRRPMDNPLIVHIHSLNQLYEVAVKIPPEAEKL 95

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           A+ FWPGP+TL+  L  +  + P  TA   T   R+P        I   G P+A PSAN 
Sbjct: 96  ARRFWPGPMTLL--LWKSDKVPPEVTAGRPTVAVRMPAHPVALAFIRESGVPIAAPSANL 153

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           +G+ S T  +H++   +     +IID G +  G+ESTIV++  +  V +LRPGGL +E +
Sbjct: 154 AGRPSPTTGEHVV-RDLYGRADVIIDSGETVYGVESTIVDMTRDPPV-LLRPGGLPVEEI 211

Query: 203 KRAISVE-----LEYCVDETSTPQSPGMLKSHYAPRSQV--------RLRAIHVNPREAL 249
           +R +  E         + +     +PGM   HYAP  ++         L+A      E +
Sbjct: 212 ERELGKEVVIPQFARGLGQADVALAPGMKYRHYAPFKRLTIVEGDYSDLKAYAAKVAEVV 271

Query: 250 ---IRFGNVPI---------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
              I  G  PI            +  +  L L     +   A NLF   +  D+      
Sbjct: 272 KQEIAKGARPIILCSSETAQYYEQQGLRHLVLGPRSNIFIVARNLFKTFRAIDEMLDVDE 331

Query: 298 AF-SSIPNHGLGIAINNRLERAAA 320
           AF       GLG+A+ NR  +A+ 
Sbjct: 332 AFMEGFEERGLGLAVMNRARKASG 355


>gi|300706558|ref|XP_002995535.1| hypothetical protein NCER_101537 [Nosema ceranae BRL01]
 gi|239604680|gb|EEQ81864.1| hypothetical protein NCER_101537 [Nosema ceranae BRL01]
          Length = 327

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 159/306 (51%), Gaps = 17/306 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSLH 82
           + IPTETVYGLA    N  A++ ++ +KKRP  NPLI HVS + M++      V      
Sbjct: 23  VVIPTETVYGLAASINNEQALKNIFRLKKRPIDNPLIVHVSSLDMLRTIIEGEVPENYQK 82

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
           + ++FWPGP++L+    +  ++    TA L T   R+P       +IE    PLA PSAN
Sbjct: 83  IIEIFWPGPISLLFR--ANKNLSKNVTAGLNTVLVRMPDNKVVLDIIEKLNVPLAAPSAN 140

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG+ S T V+H +        PL +DGG  K+GLEST+ +   E    ILRPGG++I  
Sbjct: 141 VSGKPSPTCVQHAI-DDFGDNCPLYLDGGECKVGLESTVFSYINEP--IILRPGGVKICE 197

Query: 202 LKRAI--SVELEY-CVDETSTPQSPGMLKSHYAPRSQ-VRLRAIHVNPREALIRFGNVPI 257
           L+  I   + + Y      +T   PG    HY+P ++ + +    +N +E +  + NV I
Sbjct: 198 LENIICKKINVNYLSFTGKNTTICPGQKYKHYSPINKFIVITTDTINLKELIKNYKNVGI 257

Query: 258 ---KNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
               N +  I ++ + + G   KE A N F  ++   D+    I   S+P    G+AI +
Sbjct: 258 LSHFNFKPQIENVTIFELGNNYKEVATNFFKGLR-KLDTTCDIIITKSLPLEYEGMAIMD 316

Query: 314 RLERAA 319
           R+++AA
Sbjct: 317 RMKKAA 322


>gi|193212146|ref|YP_001998099.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobaculum parvum NCIB 8327]
 gi|193085623|gb|ACF10899.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobaculum parvum NCIB 8327]
          Length = 314

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 162/328 (49%), Gaps = 22/328 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TD     +A   L+ G  +A PTETVYGL  D+ NP A+  ++  K RP+ NPL
Sbjct: 1   MQTL-VTDKP--EEAASHLNRGETVAFPTETVYGLGADAFNPDAVAGIFRAKGRPSDNPL 57

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    V + A  ++  +  L + ++PGPLT+VL    +  +  + +A L T   R 
Sbjct: 58  IVHVASPDRVGEVAREINEAAQRLIERYFPGPLTIVLKKRDS--VPDIVSAGLPTVGVRC 115

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      + +    HP+A PSAN SG+ S T+ K +    +  +I  ++ G  S IGLES
Sbjct: 116 PAHSQAAEFLRHCKHPVAAPSANVSGRPSPTDWKTVY-HDLGGKIACLLRGEPSTIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+   +  + +LR G + +E L+  +  +++     E   P+SPG    HY+P +++ 
Sbjct: 175 TIVDCSVKPPL-LLRSGAISLEALQEIVPDIKVATTCREGEAPKSPGQKYRHYSPEAEII 233

Query: 238 L-----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
           L      ++    + A I     P      A  SL       L E A  LF + +  D  
Sbjct: 234 LVETAPSSLPTEQKAAWIGLSTPPA----GATKSLQCH---DLDEYARVLFGFFRTCDAE 286

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G  +I     P  G+G AI +RL +AA 
Sbjct: 287 GIRTIYCELPPEEGIGRAIRDRLVKAAG 314


>gi|18313733|ref|NP_560400.1| sua5 family protein [Pyrobaculum aerophilum str. IM2]
 gi|18161288|gb|AAL64582.1| sua5 family protein [Pyrobaculum aerophilum str. IM2]
          Length = 343

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 158/330 (47%), Gaps = 23/330 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++ A E L  G  +A PTETVYGL   +       ++++ K RP  NPLI HV  +
Sbjct: 12  DPEVIKTAAEVLKNGGIVAAPTETVYGLFTHAYREDGCVKVFKAKGRPMDNPLIVHVDSV 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            M  + A +      +    WPGP+T+V+   S   +    TA L T   R P       
Sbjct: 72  EMASEIAEIPEGIRGVLAQLWPGPVTIVVK--SRGVVPRCVTAGLNTVAVRAPAHPIPLA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+    P+A PSAN++G+ S T   HIL   +  E+ LIIDGG +  G+ESTI++V   
Sbjct: 130 IIKELNAPIAGPSANKAGRPSPTTATHIL-EDLGDEVDLIIDGGPTFFGVESTIIDV-TR 187

Query: 187 KKVRILRPGGLEIETLKRAISVELEY-----CVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           K   +LRPG   +E L++    E++       + E     +PGM   HYAP +   L  +
Sbjct: 188 KPPALLRPGPFTVEELEKFFG-EIQIPPVARGLAEAEVALAPGMKYKHYAPDTM--LVIV 244

Query: 242 HVNPREALIRFGNVPIK--------NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           H +  EA+       +K           +A  SL+L     L E A NL+  ++  D   
Sbjct: 245 HFDLAEAVKVLKARGLKVAVLCAAGKCADADASLHLGT--DLYEVAKNLYKSLRDLDKLS 302

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            +     ++   G+G+AI NR+ +AAA R 
Sbjct: 303 VNIGIIPAVEERGIGLAIMNRIRKAAAHRE 332


>gi|170755509|ref|YP_001779769.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B1 str.
           Okra]
 gi|169120721|gb|ACA44557.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B1 str.
           Okra]
          Length = 351

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 173/344 (50%), Gaps = 44/344 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S I
Sbjct: 14  DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKI 73

Query: 68  ----SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG 122
                +VKK   + P++  L   FWPGP+T++   L   DI P  T A L +   R+P  
Sbjct: 74  KDIDELVKK---IPPIAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSN 127

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI   G P+A PSAN SG+ S T+++  +   +   + +I+ G  S++G+EST++
Sbjct: 128 KIAMELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVI 186

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPR 233
           +        ILRPGG+ +E +K    V+    +D        +   P++PGM   HYAP+
Sbjct: 187 DCTINPPC-ILRPGGITLEMVKE---VDSNIYIDPAIMKKPGKDLKPKAPGMKYRHYAPK 242

Query: 234 SQVRLRAIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLK 276
           + +++    +N              +A  + G +   + I+N     ++S+   K   L 
Sbjct: 243 APLKIIKGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LN 300

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             A NLF  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 301 TIAHNLFYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344


>gi|212528906|ref|XP_002144610.1| translation initiation protein Sua5 [Penicillium marneffei ATCC
           18224]
 gi|210074008|gb|EEA28095.1| translation initiation protein Sua5 [Penicillium marneffei ATCC
           18224]
          Length = 426

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 125/231 (54%), Gaps = 17/231 (7%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82
           +P+  PTETVYGL  D+    +++ +Y+ KKRP+ NPLI HV  I MV +  + D  S  
Sbjct: 54  IPVGFPTETVYGLGADATRSGSVQGIYKAKKRPSDNPLIVHVDSIEMVNRLLNPDGNSTT 113

Query: 83  --------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
                   L   FWPG LT++L     + +    TANL T   R+P   F + LI     
Sbjct: 114 KIPTIYEPLISRFWPGALTILLPNPKGSLLAKEVTANLPTFGVRMPSSAFARLLIHVTDR 173

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PLA PSAN S + S T  +H+    +   I LI+DGG   +G+EST+V+   +    ILR
Sbjct: 174 PLAAPSANASTKPSPTTAQHVY-HDLQGRIDLILDGGPCGVGVESTVVDGLSDPPA-ILR 231

Query: 194 PGGLEIETLKRA---ISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238
           PGG+ IE +K      +V++ Y    +     P++PGM   HY+P+++V L
Sbjct: 232 PGGIGIEEIKTCPGWENVQVGYHDNALQSKEAPRAPGMKYKHYSPKARVVL 282


>gi|331086808|ref|ZP_08335885.1| hypothetical protein HMPREF0987_02188 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409974|gb|EGG89409.1| hypothetical protein HMPREF0987_02188 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 507

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 168/337 (49%), Gaps = 31/337 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N +  A   L  G  +A PTETVYGL   +    A ++ Y  K RP+ NPLI H+++ 
Sbjct: 14  DENVIGMAGVILKEGGLVAFPTETVYGLGAHALKEEAAKKTYAAKGRPSDNPLIVHIAEY 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             +++ A ++   +  LA  FWPGPLT++ +    + + P  +T  L T   R+P     
Sbjct: 74  RALEEIAVNIPDKTALLANHFWPGPLTMIFE---KSALVPYGTTGGLDTVAVRMPADEVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +I   G  ++ PSAN SG+ S T   H+    +  +I +IIDGG  +IG+ESTI+++ 
Sbjct: 131 RAIILAGGGYVSAPSANTSGRPSPTTAMHV-KEDLDGKIDMIIDGGSVEIGVESTILDMT 189

Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRA 240
               + ILRPG +  E L+  I    E +  V + S   P++PGM   HYAP++  +L  
Sbjct: 190 VTPPM-ILRPGAITKEMLEEVIGEVTEDQAIVSDKSKEAPKAPGMKYRHYAPKA--KLMI 246

Query: 241 IHVNPREALIRFGNVPIKN----IENAIISLNLS----KTGKLKE---------AAFNLF 283
           I    +EA+     V  +      +  II+ + +    K G +K           A NL+
Sbjct: 247 IEGETKEAVKAIRQVAFEQERLGYKVGIIATDETAEKYKRGIVKNIGTRENEYTIAQNLY 306

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D+     I   +    G+G A+ NRL++AA 
Sbjct: 307 RVLREFDEEDVDYIYSEAFAMDGIGSAVMNRLKKAAG 343


>gi|216264566|ref|ZP_03436558.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           156a]
 gi|221217952|ref|ZP_03589419.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 72a]
 gi|225550010|ref|ZP_03770971.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 118a]
 gi|215981039|gb|EEC21846.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           156a]
 gi|221192258|gb|EEE18478.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 72a]
 gi|225369469|gb|EEG98921.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 118a]
          Length = 337

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P   T
Sbjct: 66  TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    P+  PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKTEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230
           EST+V    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG +  HY
Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283
            P+  V L     N R  L +   + I    +++ + +      N++    L+E A NL+
Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLY 294

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             + +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|70607376|ref|YP_256246.1| hypothetical protein Saci_1642 [Sulfolobus acidocaldarius DSM 639]
 gi|68568024|gb|AAY80953.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 352

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 162/324 (50%), Gaps = 19/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  ++ PTETVYGL  ++ +  A  ++++ K RP  NPLI H++++  + 
Sbjct: 17  IREASEVIKRGGLVSFPTETVYGLGANAYDGNACLKIFQAKNRPPDNPLIVHIAELDQLF 76

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A  ++   L + ++ WPGPLTL+L    ++ I    +A L T   R+P      +LI 
Sbjct: 77  DVAVDINEKVLEIVQVIWPGPLTLILK--KSSKIPKEVSAGLDTVAVRMPAHPIALQLIR 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN + + S T  + +L + +   + +IIDGG +  G+ESTIVNV      
Sbjct: 135 ESGVPIAAPSANLATRPSPTRAEDVL-NDLNGRVDIIIDGGHTFFGVESTIVNVTSNPPT 193

Query: 190 RILRPGGLEIETLKR---AISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL---RAIH 242
            +LRPG   +E L+     I V E    + E     +PGM   HYAP  ++ L   R++ 
Sbjct: 194 -LLRPGPFTVEELRSFFPDIQVPEFARGLGEADIALAPGMKYRHYAPSKKIILIENRSLM 252

Query: 243 ---VNPREALIRFGNVPIKNIENAIISLNLSKTG---KLKEAAFNLFNYMKIADDSGASS 296
              V+   A  +   +  K + N     ++   G    L E A NLF   ++ ++     
Sbjct: 253 RKVVDLLSAKYKVTVLITKELVNEFKDKDMIVLGSDENLYEVARNLFESFRLLENRDTEL 312

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
                 P  G+G+AI NR  +A+ 
Sbjct: 313 GVMVGFPERGVGLAIMNRARKASG 336


>gi|238019082|ref|ZP_04599508.1| hypothetical protein VEIDISOL_00944 [Veillonella dispar ATCC 17748]
 gi|237864337|gb|EEP65627.1| hypothetical protein VEIDISOL_00944 [Veillonella dispar ATCC 17748]
          Length = 347

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 167/343 (48%), Gaps = 33/343 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI++      L      L  G  ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI
Sbjct: 8   QIITNPSEQELDMLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 67

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119
            HV +   +K   + V   +  L   FWPGPLT+    L  +D+ P  +T  L     R 
Sbjct: 68  LHVPNSESIKPLVTEVSNTAQLLMDTFWPGPLTIT---LPKSDLVPNRATGGLPRVALRC 124

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + L+E  G P+A PSAN SG+ S T  + +    +   I  I+D G   IG+ES
Sbjct: 125 PDHKICRALLERAGVPVAAPSANISGRPSPTTAQDVY-HDMKGRISYILDAGPCTIGVES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQ 235
           T+V V  + KV ILRPGG+    L+  +S  +EY    V+ T+ P++PGM  +HYAP + 
Sbjct: 184 TVVEVH-DDKVIILRPGGITKAQLENVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAP 241

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISL------NLSKT------------GKLKE 277
             +  +  NP      F  +  + IE  I  L      NL K             G    
Sbjct: 242 --MTVVVGNPEVIASTFKELS-EGIEGPIGCLVSHETYNLIKDDMRFMCHCFGHHGDALS 298

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              + +  +   +++  + I    + ++G G+AI NR+E+A++
Sbjct: 299 LGHDFYKSLLHFNENHVTLILAEGVNDNGFGVAIMNRMEKASS 341


>gi|223889416|ref|ZP_03624002.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 64b]
 gi|224532614|ref|ZP_03673236.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23]
 gi|224533276|ref|ZP_03673870.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi CA-11.2a]
 gi|223885102|gb|EEF56206.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 64b]
 gi|224512470|gb|EEF82849.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23]
 gi|224513441|gb|EEF83798.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi CA-11.2a]
 gi|312149111|gb|ADQ29182.1| Sua5/YciO/YrdC/YwlC family protein, putative [Borrelia burgdorferi
           N40]
          Length = 337

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P   T
Sbjct: 66  TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    P+  PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230
           EST+V    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG +  HY
Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283
            P+  V L     N R  L +   + I    +++ + +      N++    L+E A NL+
Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLY 294

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             + +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|254296311|ref|ZP_04963768.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e]
 gi|157805879|gb|EDO83049.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e]
          Length = 341

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 158/338 (46%), Gaps = 38/338 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243

Query: 239 RAIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------NL 282
            A   + P  A  R    P+  +  A      S+ G    AA                 L
Sbjct: 244 AAFERLEPLLAAARDTGEPVALVARA------SRAGAWAHAAGVHFVAAPEDPAAYAREL 297

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++  D +  + I    +P+     A+N+RL RAAA
Sbjct: 298 YGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGRAAA 335


>gi|189211403|ref|XP_001942032.1| translation initiation protein Sua5 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978125|gb|EDU44751.1| translation initiation protein Sua5 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 507

 Score =  132 bits (331), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 25/249 (10%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK- 71
           R A E  D   P+A PTETVYGL  D+    A++ ++  K RPA NPLI HV  +  ++ 
Sbjct: 107 RAAKELQDTNNPVAFPTETVYGLGADATRSAAVKEIFARKGRPADNPLIVHVHSLPQLRA 166

Query: 72  ------------KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
                       K    DP+      + + FWPGP+T++L +   + + P  TA L T  
Sbjct: 167 LLAGRLEAEGDGKILGKDPIPEIYRPVIERFWPGPITIILPVPQNSILAPEVTAGLSTFG 226

Query: 117 FRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       L+   G PLA PSAN S + S T  +H+    + +++ LIIDGG  ++G
Sbjct: 227 ARMPRSIIALSLLRLCGRPLAAPSANASTRPSPTAAEHV-HDDLREKLDLIIDGGPCEVG 285

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSH 229
           +EST+V+        ILRPGG+ +E L++    E       +   +++S P++PGM   H
Sbjct: 286 VESTVVDGLSNPPA-ILRPGGVTVEQLRQCPGWESVIVGYKDKQAEDSSKPRAPGMKYRH 344

Query: 230 YAPRSQVRL 238
           Y+P++ V L
Sbjct: 345 YSPKASVLL 353


>gi|15595079|ref|NP_212868.1| hypothetical protein BB0734 [Borrelia burgdorferi B31]
 gi|218249379|ref|YP_002375233.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           ZS7]
 gi|225548887|ref|ZP_03769864.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 94a]
 gi|226321432|ref|ZP_03796959.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi Bol26]
 gi|2688669|gb|AAC67081.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|218164567|gb|ACK74628.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           ZS7]
 gi|225370490|gb|EEG99926.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 94a]
 gi|226233228|gb|EEH31980.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi Bol26]
          Length = 337

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P   T
Sbjct: 66  TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    P+  PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230
           EST+V    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG +  HY
Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283
            P+  V L     N R  L +   + I    +++ + +      N++    L+E A NL+
Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVFNTLEEYAQNLY 294

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             + +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|167464535|ref|ZP_02329624.1| hypothetical protein Plarl_18596 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383116|ref|ZP_08056943.1| ribosome maturation-like factor [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152778|gb|EFX45404.1| ribosome maturation-like factor [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 352

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 165/332 (49%), Gaps = 24/332 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+R+A   L  G  +A PTETVYGL  D+    A+R ++  K RP+ NPLI H++D   
Sbjct: 18  KAVREAAALLREGKTVAFPTETVYGLGADAAQTEAVRAIFTAKGRPSDNPLIVHIADCKQ 77

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++   S  P  L  L    WPGPLTL+L +     + PL TA L T   R P       L
Sbjct: 78  LEDLVSGVPEVLVPLMDACWPGPLTLILPVRPDA-VSPLVTAGLDTVGIRFPDHPVALAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+A PSAN SG+ S T   H+L   +   I  IIDGG + +G+EST++  + + 
Sbjct: 137 LREAGIPIAAPSANSSGRPSPTKASHVL-EDLDGCIGGIIDGGAAGVGIESTVLQWK-DG 194

Query: 188 KVRILRPGGLEIETLK---RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------ 238
            V +LRPGG+ +E L+     + +      +    P++PGM  +HYAP  ++ L      
Sbjct: 195 VVHVLRPGGISLEQLQVLLPGVPLREPASSEHVEAPRAPGMKYTHYAPAGKLLLVQGSPA 254

Query: 239 RAIH--VNPREALI-----RFGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKI 288
             +H  +N + AL      R G +  +       +  +S  G L      A  L++ ++ 
Sbjct: 255 SRVHQWMNGQLALAKGRGERTGVLTFEEHRTCFEADYVSVCGSLANPDTIARRLYDGLRS 314

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D+   + I   + P  G+G A+ NRL +AA 
Sbjct: 315 FDEHDITYILAETCPEEGIGQAVMNRLLKAAG 346


>gi|169783792|ref|XP_001826358.1| protein SUA5 [Aspergillus oryzae RIB40]
 gi|238493617|ref|XP_002378045.1| translation initiation protein Sua5 [Aspergillus flavus NRRL3357]
 gi|83775102|dbj|BAE65225.1| unnamed protein product [Aspergillus oryzae]
 gi|220696539|gb|EED52881.1| translation initiation protein Sua5 [Aspergillus flavus NRRL3357]
          Length = 434

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 130/239 (54%), Gaps = 25/239 (10%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---------- 72
           +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H+  + M+++          
Sbjct: 55  IPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLEMLERLLNPQESGST 114

Query: 73  HASVDP------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            AS  P      +   L   FWPGPLT++L   S + +    T+ L T   R+P     +
Sbjct: 115 SASDSPRNTIPSVYQSLIARFWPGPLTILLPNPSGSLLAKEVTSKLTTFGARMPSSPLAR 174

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI     PLA PSAN S + S T  +H+    +   I LI+DGG   +G+EST+V+  C
Sbjct: 175 LLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLQGRIELILDGGSCGVGVESTVVDGLC 233

Query: 186 EKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238
           +    ILRPGG+ IE ++      +V+L Y    +D    P++PGM   HY+P+++V L
Sbjct: 234 DPPA-ILRPGGIGIEEIRTCAGWENVQLGYHDGTLDVKEIPRAPGMKYRHYSPKARVVL 291


>gi|260102572|ref|ZP_05752809.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus helveticus DSM
           20075]
 gi|260083599|gb|EEW67719.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus helveticus DSM
           20075]
          Length = 339

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 162/341 (47%), Gaps = 32/341 (9%)

Query: 1   MQIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           ++IM   I   + + +A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ N
Sbjct: 4   IKIMETKIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDN 63

Query: 59  PLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI  VSD  M++++A   P  +  L K F PGPLTL+L  +    +    T  L T  F
Sbjct: 64  PLIVTVSDEKMMERYAKEVPERAKKLIKHFCPGPLTLLL-FVKPGTLPDAVTGGLDTVAF 122

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG ++ GL
Sbjct: 123 RCPDDQLTHDLIAKLGYPIVGPSANISTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRFGL 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233
           ESTI+++  +  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP 
Sbjct: 182 ESTIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPS 240

Query: 234 SQV-------RLRAIHVNPREALIRFG------NVPIKNIENAIISLNLSKTGKLKEAAF 280
             V           I  N +  +   G      N+P +N        +L K   L +A  
Sbjct: 241 EPVVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEEN------KFDLGKN--LIDADH 292

Query: 281 NLFNYMKIADD-SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           NLF  ++  DD     +I           +A  NRL +AA 
Sbjct: 293 NLFGALRYFDDKDDIETIYVQGFDEGEESLAYMNRLNKAAG 333


>gi|295677567|ref|YP_003606091.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002]
 gi|295437410|gb|ADG16580.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002]
          Length = 350

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 165/344 (47%), Gaps = 57/344 (16%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68
           +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   D +
Sbjct: 22  IEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPHGDPN 81

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
              +H   D  +  L   FWPGPLTL+L       I    +    +   R P     + L
Sbjct: 82  YWVEHLPAD--AQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQAL 137

Query: 128 IETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLES 178
           +E +     GH  +A PSANR G +S T  +H+     S+I      ++DGG S +G+ES
Sbjct: 138 LEAFSALRGGHGGVAAPSANRFGHVSPTTAQHVRDEFGSAIH-----VLDGGASDVGIES 192

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQV 236
           TI+++       +LRPG +  + +   +  E     D  + + P++ G LK+HYAPR+ +
Sbjct: 193 TILDL-SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPRTPL 250

Query: 237 RLRAIHVNPREALIRFGNV-PIKNI----ENAIISLNLSKTGKLKEA------------- 278
                      AL+ FG + P+  +    E   +    S+ G+  +A             
Sbjct: 251 -----------ALLPFGELEPLLAVREPGERVALVARASRAGQWADADGVYFVAAPEDPH 299

Query: 279 --AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             A  L+  ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 300 VYARELYGLLRALDRANVTRILIEKLPDTIEWIAVNDRLGRAAA 343


>gi|307595866|ref|YP_003902183.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551067|gb|ADN51132.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta distributa DSM
           14429]
          Length = 375

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 168/348 (48%), Gaps = 43/348 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ +++A +++  G  +A PTETVYGL  D+ N  A  ++++ K RP  NPLI H+SD+
Sbjct: 28  DNSIIKEASDYIKNGYLVAFPTETVYGLGADTFNGEACLKIFKAKGRPPDNPLIVHISDM 87

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + + + A  +  +   + +  WPGPLTL+L    + D+    T    T   R P      
Sbjct: 88  NELDRVAIDIPEIVFPVIRKAWPGPLTLILP--KSPDVPKEVTGGRNTVAVRSPAHPVAL 145

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQ 184
            LI++   P+A PSAN+SG+ S T  +HI+       + +I +D G +  G+ESTIV+V 
Sbjct: 146 ALIKSSRTPIAAPSANKSGRPSPTLAEHIIEDYANDNVEMILLDAGPTFFGVESTIVDVT 205

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYC--VDETSTPQSPGMLKSHYAPRSQVRLR 239
               V +LRPG   IE L+   + E+   E+   + E     +PGM   HYAPR+Q  L 
Sbjct: 206 RNPPV-LLRPGPFTIEELRSLFNTEIVVPEFARGLGEADVALAPGMKYKHYAPRTQ--LI 262

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD--------D 291
            +     ++LI+       N  N  + + L  T   KE A  L  Y +I +         
Sbjct: 263 VVECEKYDSLIKLLRDVALNYLNKKLKVALLIT---KETASELMKYPEINELPIIIMGYR 319

Query: 292 SGASSIAFS-------------------SIPNHGLGIAINNRLERAAA 320
               +IA S                    I   G+G+A+ NRL +A+ 
Sbjct: 320 ENPYTIAASLFDSLRSLDRLNVDLGIAEGIEERGIGLAVMNRLRKASG 367


>gi|83719082|ref|YP_441225.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
 gi|167618052|ref|ZP_02386683.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis Bt4]
 gi|257140109|ref|ZP_05588371.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
 gi|83652907|gb|ABC36970.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
          Length = 341

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 162/335 (48%), Gaps = 42/335 (12%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S     
Sbjct: 15  EAAALLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHLAPGS--DPG 72

Query: 74  ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             VD L     KL   FWPGPLTL+L       I    +    +   R P     + L+ 
Sbjct: 73  YWVDSLPADAQKLIDAFWPGPLTLILK--RAARIPDAVSGGQDSVGLRCPSHPVAQALLR 130

Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI+++
Sbjct: 131 AFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVRVLDGGPSDVGIESTILDL 188

Query: 184 QCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
                  +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L A 
Sbjct: 189 -SRGFPALLRPGDVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLALAAF 246

Query: 242 H-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNY 285
             + P  A  R    P+     A+++  +S+ G    A               A  L+  
Sbjct: 247 ERLEPLLAAARDAGKPV-----ALVA-RVSRAGAWAHAQGVHFVAAPEDPRVYARELYGL 300

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 301 LRALDRAQVARILVEKLPDTVEWIAVNDRLGRAAA 335


>gi|257077109|ref|ZP_05571470.1| Sua5 superfamily-related protein [Ferroplasma acidarmanus fer1]
          Length = 348

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 165/335 (49%), Gaps = 26/335 (7%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ I + N   A++     + +G  +  PTETVYGL  D+ NP A  +++  K RPA N
Sbjct: 3   RIIHINNQNENYAIKVCAGIIKSGGTVVFPTETVYGLGADAFNPGACSKIFIAKNRPADN 62

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PLI H+S++ M+ + A +D       +  WP PLTL+L       +  + +A L T C R
Sbjct: 63  PLIVHISNMKMLDQVAYIDDGLRKKMENIWPSPLTLLLK--KKESVPDIVSAGLDTVCVR 120

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
            P      +LIE  G P+A PSAN S + SI + +  +   +   +  IID G  + G+E
Sbjct: 121 FPDNKIALELIEASG-PIAAPSANISTRPSIVDSETAV-EELDGRVDAIIDAGRVRYGVE 178

Query: 178 STIVNVQCEKKVRILRPGGL---EIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPR 233
           STI++   E   R+LR G     +IE++   I V+ L    +++    +PG+   HYAP 
Sbjct: 179 STILDCTAE-PYRLLRAGAFSVEDIESIIGKIYVDPLAKGYNQSDVALTPGLKYRHYAPS 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK--TGK-------LKEAAFNLFN 284
            ++ L    +   E   +F +  I      + S    K  +GK       + E A NLF 
Sbjct: 238 KKLFL----IENEEEFKKFISSEISKDFLVLCSKENEKYASGKSIVLGSDIYEIAHNLFY 293

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             +  D+SG         P  G+G+A+ NR+ +A+
Sbjct: 294 DFRYLDNSGKLYGVIQGFPESGIGLAVMNRIRKAS 328


>gi|307244020|ref|ZP_07526139.1| Sua5/YciO/YrdC/YwlC family protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492544|gb|EFM64578.1| Sua5/YciO/YrdC/YwlC family protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 345

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 170/343 (49%), Gaps = 41/343 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +      L +G  +  PTETVYGL  ++ +  A  ++Y+ K RP+ NPL+ H++D 
Sbjct: 14  DKDLIAVFASMLASGKTVIFPTETVYGLGANALDEEAAAKIYQAKGRPSDNPLLVHIADK 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FT 124
             V     ++D  +  L   FWPGPLT+V       DI P  T+  L T   R+P     
Sbjct: 74  EDVYGLVENIDDRAKLLMDKFWPGPLTIV---FKKKDIIPDRTSGGLDTVAIRMPSDQVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G P+A PSAN SG+ S T  +HI+   +   +  I+ GG    G+ESTIV++ 
Sbjct: 131 RDLIRQAGVPIAAPSANISGRPSPTKPEHII-RDMDGRVDGILVGGPCNYGVESTIVDLS 189

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240
            +  + +LRPG + +E L   +  V+L+  +   D+    ++PGM   HY+P++QV +  
Sbjct: 190 GDVAM-VLRPGSITLEMLGEVLGQVDLDPSLKNKDDNIRAKAPGMKYKHYSPQAQVYI-- 246

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------------------KEAAF 280
           +    +E   R   V    ++NA   L   KTG L                     E A 
Sbjct: 247 VRAGDQEDFAR--RVDELCLDNAKKGL---KTGVLTRSSDQHPYQAQVFDLGESDAEVAK 301

Query: 281 NLFNYMKIADDSGASSIAF-SSIPNHGLGIAINNRLERAAAPR 322
           NLF+ + I+ D  +  IA+       GLG+AI NRL++AA  R
Sbjct: 302 NLFDSL-ISLDRESIDIAYVPYFEEKGLGVAIMNRLKKAAGYR 343


>gi|294793889|ref|ZP_06759026.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 3_1_44]
 gi|294455459|gb|EFG23831.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 3_1_44]
          Length = 347

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 164/320 (51%), Gaps = 33/320 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83
           ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI HV +   +K   + +   +  L
Sbjct: 31  VSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLILHVPNSESIKPLVTEISATAQAL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141
              FWPGPLT+    L  +D+ P  +T  L     R P     + L+E  G P+A PSAN
Sbjct: 91  MDAFWPGPLTIT---LPKSDLVPDRATGGLPRVALRCPDHKVCRALLERAGVPVAAPSAN 147

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG+ S T  + +    +   I  I+D G   IG+EST+V V  + KV ILRPGG+    
Sbjct: 148 ISGRPSPTTAQDVY-HDMKGRISYILDAGPCTIGVESTVVEVH-DDKVIILRPGGITKAQ 205

Query: 202 LKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258
           L+  +S  +EY    V+ T+ P++PGM  +HYAP +   +  +  NP +    F  +  +
Sbjct: 206 LEGVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAP--MTVVVGNPEDIASMFKALS-E 261

Query: 259 NIENAIISLNLSKTGKL--KEAAF--NLFNY----MKIADDSGASSIAFS---------- 300
            IE  I  L   +T  L  ++  F  + F +    + +  D   S + F+          
Sbjct: 262 GIEGPIGCLVSHETYNLIKEDGRFMCHCFGHHGDALALGHDFYKSLLHFNENHVTLILAE 321

Query: 301 SIPNHGLGIAINNRLERAAA 320
            + + G G+AI NR+E+A++
Sbjct: 322 GVDDDGFGVAIMNRMEKASS 341


>gi|226321225|ref|ZP_03796758.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 29805]
 gi|226233354|gb|EEH32102.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 29805]
          Length = 337

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P   T
Sbjct: 66  TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    P+  PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230
           EST+V    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG +  HY
Sbjct: 179 ESTVVGFDLKDNVLILRPGTI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283
            P+  V L     N R  L +   + I    +++ + +      N++    L+E A NL+
Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLY 294

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             + +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|213410030|ref|XP_002175785.1| SUA5/yciO/yrdC family protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212003832|gb|EEB09492.1| SUA5/yciO/yrdC family protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 402

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 164/345 (47%), Gaps = 53/345 (15%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---------DISMVKKHAS 75
           +A PTETVYGL  D+R   A+  +Y+ K RPA NPLI H+          D +  K    
Sbjct: 56  VAFPTETVYGLGADARKSEAVLNIYKAKNRPADNPLITHIGSLKQLSELIDSTTQKNKLK 115

Query: 76  VD-------PLSLH-LAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFT 124
            D       PL    L   +WPGP++++L +  T  + +  + TA   T   R+P     
Sbjct: 116 GDSGLWENIPLVYKPLIDRYWPGPMSILLPIEGTEGSPVSKVVTAGQSTFAVRMPEHPVA 175

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI     PLA PSAN S + S T   H+    +  ++PLI+DGG   +GLEST+VN  
Sbjct: 176 LALILKSKAPLAAPSANASTRPSPTLAAHVF-HDLNGKLPLILDGGPCGVGLESTVVNGL 234

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCV--------DETSTPQSPGMLKSHYAPRSQV 236
           C+  V ILRPGG+ +E ++    V     V         ++  PQ+PGM   HY+P ++V
Sbjct: 235 CDPPV-ILRPGGISLEDIQSCGGVWSRTVVYKPTDDVEKKSFVPQTPGMKYRHYSPTAKV 293

Query: 237 RL---------------RAIHVN-----PREALIRFGNVPIKNIENAI-ISLNLSKTGKL 275
            L                 +H N     P+  ++      ++   + + +S+ L +TG  
Sbjct: 294 LLFEGMSEAEANDILQNDYLHANQNTKPPKIGVLTSCRWNVEKFSDMVSVSMCLGRTG-- 351

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           KE   NLF+ ++  D+     I    + +   G+AI NRL +AA+
Sbjct: 352 KEIRRNLFSMIRDMDEKQIDIILVEGVESDHEGLAIMNRLGKAAS 396


>gi|167378326|ref|XP_001734759.1| sua5 [Entamoeba dispar SAW760]
 gi|165903590|gb|EDR29072.1| sua5, putative [Entamoeba dispar SAW760]
          Length = 289

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/233 (38%), Positives = 122/233 (52%), Gaps = 14/233 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  +  A + +  G  +  PTETVYGL  D   P AI +++++K RP  NPLICH+SDI
Sbjct: 28  DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87

Query: 68  SMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            M+ K   H S D  +  L K FWPG LT++     T       TA L T   R+P    
Sbjct: 88  EMLNKLAAHVSED--AHKLIKRFWPGALTIIFPRNETVPNE--VTAGLNTVGVRMPSHPI 143

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             + I+    P+A PSAN S + S T  +H +   +   I +IIDGG   IG+EST++ +
Sbjct: 144 AYEFIKQCKTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGACDIGVESTVLLL 202

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAP 232
             E    ILRPGG+ +E L+  I     Y +       + P +PGM   HYAP
Sbjct: 203 GNEHPT-ILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAP 254


>gi|257093416|ref|YP_003167057.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045940|gb|ACV35128.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 352

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/247 (34%), Positives = 125/247 (50%), Gaps = 18/247 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD   + +A   L AG  +A PTETVYG+  D+ NP A+ R++  K RPA +PLI H+  
Sbjct: 3   TDQAVIDRAVALLQAGELVAFPTETVYGVGADAANPAAVGRIFTAKGRPADHPLIVHLPG 62

Query: 67  ISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
              + + A   P  +  LA+ FWPGPLTL+L       +  + T    T   RVP     
Sbjct: 63  DGGLDRWARDIPTRAWELAEAFWPGPLTLILKRAPA--VPAIVTGGQDTVGVRVPAHPLA 120

Query: 126 KLIETYGHP----------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             +                +A PSANR G+IS T   H+  + +   +PLI+DGG   +G
Sbjct: 121 LALLRAYAEAGGGVDGLCGIAAPSANRFGRISPTEAAHV-RAELGDAVPLILDGGRCPVG 179

Query: 176 LESTIVNVQ--CEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYA 231
           +ESTIV++    ++  R+LRPG +  E +   I V  E      +  TP+  G L +HYA
Sbjct: 180 IESTIVDLTRGDDQAPRLLRPGRVTPEQIAAVIGVLPEIVTRPADDGTPRVSGSLAAHYA 239

Query: 232 PRSQVRL 238
           P + +R 
Sbjct: 240 PTTPLRF 246


>gi|225573947|ref|ZP_03782592.1| hypothetical protein RUMHYD_02041 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038806|gb|EEG49052.1| hypothetical protein RUMHYD_02041 [Blautia hydrogenotrophica DSM
           10507]
          Length = 356

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 166/336 (49%), Gaps = 25/336 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + + +A + L  G  +A PTETVYGL  ++ +  A  ++Y  K RP+ NPLI H++ +
Sbjct: 14  EQDIISQAGKILREGGLVAFPTETVYGLGGNALDAAASEKIYAAKGRPSDNPLIVHIARM 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             ++K  +  P     LA+  WPGPLT++L    + ++   +T  L +   R P     +
Sbjct: 74  EDLEKIVTGVPKKAKILAEACWPGPLTMILP--KSEEVPYETTGGLDSVAVRYPSHPVAQ 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G  +A PSAN SG+ S T   H+    +   + +I+DGG   IG+ESTIV+   
Sbjct: 132 ALILAAGGFVAAPSANTSGRPSPTTAAHV-QEDLTGAVDMILDGGQVGIGIESTIVDF-T 189

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL--- 238
           EK   +LRPG + +E LK  +  V+++  +   D +  P++PGM   HYAP++++ +   
Sbjct: 190 EKIPTVLRPGYISLEKLKELLGEVKMDKGLLRADASQRPKAPGMKYRHYAPKAELTIVEG 249

Query: 239 ------RAIHVNPREALIRFGNVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNYM 286
                   I+   +EA  R   + I   E         +   +    K +  A +L+  +
Sbjct: 250 STEYVVAYINQKAKEASKRGRQIGIIGTEETFPYYSSGVVRCIGSRKKEEGIALHLYEVL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  D     +I   S     +G AI NRL +AA  R
Sbjct: 310 RDFDQCEVEAIYSESFDTPKMGQAIMNRLLKAAGHR 345


>gi|312222358|emb|CBY02298.1| hypothetical protein [Leptosphaeria maculans]
          Length = 543

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 138/262 (52%), Gaps = 26/262 (9%)

Query: 1   MQIMSITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +Q +   D  +L++A  E L+   P+A PTETVYGL  D+   +A++ ++  K RPA NP
Sbjct: 131 IQYVEGKDYESLKRAAGELLNTDTPVAFPTETVYGLGADATRSSAVKAIFAAKGRPADNP 190

Query: 60  LICHVSDISMVKK---------HASVDP-------LSLHLAKLFWPGPLTLVLDLLSTTD 103
           LI H+  +  ++            +V P       +   + + FWPGP+T++L    ++ 
Sbjct: 191 LIVHIHSLRQLRAILSGGKENLKGAVGPEDDPIPAIYRPIIERFWPGPITIILPAPDSSM 250

Query: 104 IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
           + P  TA L T   R+P       L+   G PLA PSAN S + S T  +H+    + + 
Sbjct: 251 LAPEVTAGLPTFGARMPRSILALSLLRLCGRPLAAPSANASTRPSPTAAEHVF-DDLQER 309

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE---LEYCVDE--- 216
           I  IIDGG  ++G+EST+V+        ILRPGG+ +E L++    E   + Y   +   
Sbjct: 310 IRTIIDGGPCEVGVESTVVD-GLSSPPSILRPGGITVEQLRQCPGWENVVVGYKDSQEGG 368

Query: 217 TSTPQSPGMLKSHYAPRSQVRL 238
            S P++PGM   HY+P+++V L
Sbjct: 369 ASKPRAPGMKYRHYSPKAKVIL 390


>gi|325663226|ref|ZP_08151676.1| hypothetical protein HMPREF0490_02417 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470680|gb|EGC73910.1| hypothetical protein HMPREF0490_02417 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 509

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 169/337 (50%), Gaps = 31/337 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +  A   L  G  +A PTETVYGL   +    A ++ Y  K RP+ NPLI H+++ 
Sbjct: 16  DEDVIGMAGVILKEGGLVAFPTETVYGLGAHALKEEAAKKTYAAKGRPSDNPLIVHIAEY 75

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
             +++ A ++   +  LA  FWPGPLT++ +    + + P  +T  L T   R+P     
Sbjct: 76  RALEEIAVNIPDKTALLANHFWPGPLTMIFE---KSALVPYGTTGGLDTVAVRMPADEVA 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +I   G  ++ PSAN SG+ S T   H+    +  +I +IIDGG  +IG+ESTI+++ 
Sbjct: 133 RAIILAGGGYVSAPSANTSGRPSPTTAMHV-KEDLDGKIDMIIDGGSVEIGVESTILDMT 191

Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRA 240
               + ILRPG +  E L+  I    E +  V + S   P++PGM   HYAP++  +L  
Sbjct: 192 VTPPM-ILRPGAITKEMLEEVIGEVTEDQAIVSDKSKEAPKAPGMKYRHYAPKA--KLMI 248

Query: 241 IHVNPREALIRFGNVPIKN----IENAIISLNLS----KTGKLKE---------AAFNLF 283
           I  + +EA+     V  +      +  II+ + +    K G +K           A NL+
Sbjct: 249 IEGDTKEAVKAIRQVAFEQERLGYKVGIIATDETAEKYKRGIVKNIGTRENEYTIAQNLY 308

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D+     I   +    G+G A+ NRL++AA 
Sbjct: 309 RVLREFDEEDVDYIYSEAFAMDGIGSAVMNRLKKAAG 345


>gi|167579982|ref|ZP_02372856.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           TXDOH]
          Length = 341

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 162/335 (48%), Gaps = 42/335 (12%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S     
Sbjct: 15  EAAALLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHLAPGS--DPG 72

Query: 74  ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             VD L     KL   FWPGPLTL+L       I    +    +   R P     + L+ 
Sbjct: 73  YWVDSLPADAQKLIDAFWPGPLTLILK--RAARIPDAVSGGQDSVGLRCPSHPVAQALLR 130

Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI+++
Sbjct: 131 AFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTILDL 188

Query: 184 QCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
                  +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L A 
Sbjct: 189 -SRGFPALLRPGDVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLALAAF 246

Query: 242 H-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNY 285
             + P  A  R    P+     A+++  +S+ G    A               A  L+  
Sbjct: 247 ERLEPLLAAARDAGEPV-----ALVA-RVSRAGAWAHAQGVHFVAAPEDPRVYARELYGL 300

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 301 LRALDRAQVARILVEKLPDTVEWIAVNDRLGRAAA 335


>gi|320582245|gb|EFW96463.1| hypothetical protein HPODL_2120 [Pichia angusta DL-1]
          Length = 380

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 159/327 (48%), Gaps = 33/327 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-----ASVDPL 79
           +  P+ETVYGL   S +  +++ +Y  K RPA NPLI HVS I  +K+        +  +
Sbjct: 51  VGFPSETVYGLGASSLSSESVKSIYAAKNRPADNPLISHVSSIDQLKRKLMVPGQEIPEI 110

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLS---TANLKTACFRVPCG-FTKKLIETYGHPL 135
              L + FWPGPLT++L +       P+S   T+   T   R+P     + LI     PL
Sbjct: 111 YAPLIEKFWPGPLTILLPMPENVHDSPISQLVTSGQPTFAVRMPQNPVARALIYISDLPL 170

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN S + S T   H+    +   IPLI+DGG S +GLEST+V+  C+  + +LRPG
Sbjct: 171 AAPSANASTRPSPTTAAHVY-HDLKGRIPLILDGGPSDVGLESTVVDGLCDPPM-LLRPG 228

Query: 196 GLEIETLKRAISVELEYCVDETSTP------QSPGMLKSHYAPRSQV-----------RL 238
           G+ +E +K+A     +  V    T       ++PGM   HY+P ++V           ++
Sbjct: 229 GISLEQIKQAGGPRWQNIVVAKKTAGKLEPVRTPGMKYRHYSPTARVVLFNNCGDGKEKV 288

Query: 239 RAI-----HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           +A        N + AL++       N  + +IS + +      E   NLF+ ++  D   
Sbjct: 289 KAYLEQNNLQNKKVALLKTRRFAPANDISPLISYDGTLGTSGDEIQRNLFSALRALDAEE 348

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I    +     G+AI NRL +AA+
Sbjct: 349 YDYILIEGVDETAEGLAIMNRLSKAAS 375


>gi|327303106|ref|XP_003236245.1| translation initiation protein Sua5 [Trichophyton rubrum CBS
           118892]
 gi|326461587|gb|EGD87040.1| translation initiation protein Sua5 [Trichophyton rubrum CBS
           118892]
          Length = 445

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 26/266 (9%)

Query: 11  ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           AL +A E +  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS    
Sbjct: 48  ALIEAAEAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRDQ 107

Query: 70  VKK----------------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           +++                 +S+  +   L K FWPGPL+++L   S   + P  TANL 
Sbjct: 108 LERLLMDPKQSNGAIKCRSTSSIPKIYEPLIKRFWPGPLSIILPNPSHLPLAPEVTANLP 167

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P     + LI     P+A PSAN S + S T  +H+  + +   I +I+DGG  
Sbjct: 168 TFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIEMILDGGPC 226

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGML 226
            +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM 
Sbjct: 227 GVGVESTVVD-GLSSPPAILRPGGVGIDELRTCPGWEDVKIGYKDGALQGKTAPRAPGMK 285

Query: 227 KSHYAPRSQVRLRAIHVNPREALIRF 252
             HY+P+++V L     +P   + R 
Sbjct: 286 YKHYSPKARVVLYEPGQDPNSVMNRI 311


>gi|302509580|ref|XP_003016750.1| hypothetical protein ARB_05042 [Arthroderma benhamiae CBS 112371]
 gi|291180320|gb|EFE36105.1| hypothetical protein ARB_05042 [Arthroderma benhamiae CBS 112371]
          Length = 445

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/254 (35%), Positives = 138/254 (54%), Gaps = 28/254 (11%)

Query: 10  NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL KA E +  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS  +
Sbjct: 47  TALLKAAEAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRA 106

Query: 69  MVKKHASVDP------LSLH-----------LAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
            +++   VDP      +  H           L + FWPGPL+++L   S   + P  TAN
Sbjct: 107 QLERLL-VDPKQSNGAIKCHSTSSIPKIYEPLIERFWPGPLSIILSNPSHLPLAPEVTAN 165

Query: 112 LKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           L T   R+P     + LI     P+A PSAN S + S T  +H+  + +   I +I+DGG
Sbjct: 166 LPTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIEMILDGG 224

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETSTPQSPG 224
              +G+EST+V+        ILRPGG+ I+ L+       V++ Y    +   + P++PG
Sbjct: 225 PCGVGVESTVVD-GLSSPPAILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPG 283

Query: 225 MLKSHYAPRSQVRL 238
           M   HY+P+++V L
Sbjct: 284 MKYKHYSPKARVVL 297


>gi|237793460|ref|YP_002861012.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Ba4 str.
           657]
 gi|229261243|gb|ACQ52276.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Ba4 str.
           657]
          Length = 351

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 171/338 (50%), Gaps = 32/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S +
Sbjct: 14  DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKM 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124
             ++K     P ++  L   FWPGPLT++   L   DI P  T A L +   R+P     
Sbjct: 74  KDIEKLVQKIPSVAEKLMDKFWPGPLTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 INPPC-ILRPGGITLEMLKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282
              +N              +A  + G +   + I+N     ++S+   K   L   A NL
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAQKKVGIIATDETIDNYKKGDVVSIGSRK--HLNTIAHNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344


>gi|297539832|ref|YP_003675601.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301]
 gi|297259179|gb|ADI31024.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301]
          Length = 327

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 141/255 (55%), Gaps = 15/255 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +A   L  G  +AIPTETVYGLA D+ N  A+++++  K+RPA +PLI H++DIS V
Sbjct: 4   SLDEAARRLQNGEVVAIPTETVYGLAADATNDIALQKIFTTKQRPADHPLIVHIADISQV 63

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            +  +  P +++ LAK FWPG LTL+L   +   +  +      T   RVP      +L+
Sbjct: 64  TEWVTDFPEVAVELAKAFWPGALTLILP--AKHHVSRVVRGGEPTIALRVPNHPIALELL 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +     +A PSAN   Q+S T   H+    +  ++P ++DGG  ++G+ESTIV+V  + +
Sbjct: 122 KLSKLSVAAPSANLFTQLSPTTATHV-EVGLGADVP-VLDGGACQVGIESTIVSVAADGQ 179

Query: 189 VRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL---R 239
            ++LRPG +    + +         VE +     ++TP++PG    HY+PR+ + L   R
Sbjct: 180 WQLLRPGMISEADIAKVAGRPQRKVVESDKAAATSTTPKAPGQHALHYSPRTPLFLFKDR 239

Query: 240 AIHVNPREALIRFGN 254
           A  +   E LI  G 
Sbjct: 240 AALIVTSEQLIAAGK 254


>gi|145591558|ref|YP_001153560.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283326|gb|ABP50908.1| translation factor SUA5 [Pyrobaculum arsenaticum DSM 13514]
          Length = 358

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 164/340 (48%), Gaps = 34/340 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +R A   L  G  +A PTETVYGL   +       ++++ K RP  NPLI HV  +
Sbjct: 27  DPSVIRTAAGVLRNGGIVAAPTETVYGLFAHAYREDGCAKVFKAKGRPMDNPLIVHVDTV 86

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            M    A +      + +  WPGP+T+V+   S   +    TA L T   R P       
Sbjct: 87  EMAMAVADIPNDVAEVLRRVWPGPITVVVP--SRGVVARCVTAGLPTVAVRAPAHPIPLS 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+  G P+A PSAN++G+ S T   H++   +  E+ ++IDGG +  G+ESTI++V   
Sbjct: 145 IIKELGAPIAGPSANKAGRPSPTTAGHVV-EDLDGEVDVVIDGGPTFFGVESTIIDVTKR 203

Query: 187 KKVRILRPGGLEIETLKR---AISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             V +LRPG   +E L++    +SV  +   + E     +PGM   HYAP +   L  +H
Sbjct: 204 PPV-VLRPGPFTVEELEKLFGPVSVPPVARGLAEADVALAPGMKYRHYAPDTV--LVIVH 260

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGK-------------LKEAAFNLFNYMKIA 289
            +  EA+     +  + ++ A+    L  TGK             L E A NL+  ++  
Sbjct: 261 FDLAEAV---QTLRARGLKVAV----LCATGKCAEANYVIQMGDDLYEVARNLYKSLRDL 313

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR---NQSQ 326
           D  G       +I   G+G+AI NRL +A+  R   N+ Q
Sbjct: 314 DKLGVDIGVVPAIEERGVGLAIMNRLRKASGHREALNKEQ 353


>gi|312147861|gb|ADQ30520.1| Sua5/YciO/YrdC/YwlC family protein, putative [Borrelia burgdorferi
           JD1]
          Length = 337

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 167/339 (49%), Gaps = 34/339 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P   T
Sbjct: 66  TVKKIKELSEYIPKSALMLIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    P+  PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230
           EST+V    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG    HY
Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNTIEHY 234

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283
            P+  V L     N R  L +   + I    +++ + +      N++    L+E A NL+
Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVFNTLEEYAQNLY 294

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             + +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|306820802|ref|ZP_07454427.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551192|gb|EFM39158.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 341

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 142/252 (56%), Gaps = 14/252 (5%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +++ + D N   A+  A E +  G  +  PTETVYG+  ++ +  + +++Y  K RP+ N
Sbjct: 4   EVIKLNDENYDYAINLASEHIRRGNIVIFPTETVYGIGANALDEESSKKIYMAKGRPSDN 63

Query: 59  PLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTAC 116
           PLI H+ ++  + K    +D  +  +   FWPGPLT++++    ++I P   T  L T  
Sbjct: 64  PLIVHIENMDDLNKISKKIDERTKKIIDCFWPGPLTIIVE---KSEIVPSCITGGLNTVA 120

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + +I+  G P+A PSAN SG+ SIT+ K +      K + LI+    ++IG
Sbjct: 121 VRMPSNKIARDIIKKSGIPIAAPSANISGRPSITSEKFVTDEFFGK-VDLILLNESTEIG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAP 232
           +EST+++V  E  V ILRPG +    L+  ++ ++ + +   DET  P+SPGM   HYAP
Sbjct: 180 IESTVIDVTGENIV-ILRPGFITKNDLENLLAEKIIFDLNISDETKAPKSPGMKYRHYAP 238

Query: 233 RSQVRLRAIHVN 244
           + ++ L +  +N
Sbjct: 239 KCELYLMSGSIN 250


>gi|210623302|ref|ZP_03293719.1| hypothetical protein CLOHIR_01669 [Clostridium hiranonis DSM 13275]
 gi|210153703|gb|EEA84709.1| hypothetical protein CLOHIR_01669 [Clostridium hiranonis DSM 13275]
          Length = 348

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 165/341 (48%), Gaps = 37/341 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +R+  E +  G  +  PTETVYGL  ++ +  A++++Y  K RP+ NPLI H++DI
Sbjct: 14  DIDIIREMAEKIRNGETVIFPTETVYGLGANAMDEDAVKKIYLAKGRPSDNPLIVHIADI 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124
             V K A  V   +    + FWPGPLT++   L   +I P +++  L T   R+P     
Sbjct: 74  EEVDKIALEVGEKAKKAMENFWPGPLTII---LKKKEIVPNVTSGGLSTVAIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI      +A PSAN SG+ S T  +H++   +   +  II GG    GLEST+V+  
Sbjct: 131 NALIRESKTQIAAPSANISGRPSPTKAEHVV-KEMSGRVSGIIMGGDCDFGLESTVVDFS 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVD-------ETSTPQSPGMLKSHYAPRSQVR 237
            +K + ILRPG +  E L+  +    E  +D       +    ++PGM   HY+P +QV 
Sbjct: 190 DDKPM-ILRPGSITKEMLEEVLG---EVSIDPSLSKKEDNIKAKAPGMKYKHYSPNAQVY 245

Query: 238 L----------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           +                R  H   ++  I   +  +   E   + ++L K     E A N
Sbjct: 246 IVKGGENNVITKMNELSRKNHAENKKTGIMCMSKDVDKFECDYV-VDLGKD--YNEVAAN 302

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           LF+ +   D++    +      + G+G AI NRL ++AA R
Sbjct: 303 LFDALIKMDEAKMDIVYSVCFESCGVGQAIMNRLLKSAAYR 343


>gi|195941552|ref|ZP_03086934.1| hypothetical protein Bbur8_01541 [Borrelia burgdorferi 80a]
          Length = 337

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 34/339 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV 
Sbjct: 6   IISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P   T
Sbjct: 66  TVKKIKELSEYIPKSALILIKKFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    P+  PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALSLIKASKVPIVAPSANISKRPSSTNFEMAL-----KELNGLVRGIIKPEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE--YCVDETST----PQSPGMLKSHY 230
           EST+V    +  V ILRPG +     K+ I  EL+  Y V+   T     +SPG +  HY
Sbjct: 179 ESTVVGFDLKDNVLILRPGAI----TKKMIENELQGKYTVNYAETKMELEKSPGNIIEHY 234

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLF 283
            P+  V L     N R  L +   + I    +++ + +      N++    L+E A NL+
Sbjct: 235 KPKIPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNIAVFNTLEEYAQNLY 294

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             + +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 295 KEL-VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|50302405|ref|XP_451137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640268|emb|CAH02725.1| KLLA0A03135p [Kluyveromyces lactis]
          Length = 404

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 172/364 (47%), Gaps = 55/364 (15%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+ N L  A    D    +A PTETVYGL   + N  +++ +Y+ K RP+ NPLI H+S 
Sbjct: 40  TEKNLLEAAGIIRDTSETVAFPTETVYGLGGSALNDESVKNIYKAKNRPSDNPLITHISS 99

Query: 67  ISMVKKHASVD------PLSLHLAKLF-------WPGPLTLVLDLLSTTD---IHPLSTA 110
           +S + +    D      PLS H+ +++       WPGPLT++L +   ++   +  L+TA
Sbjct: 100 LSQLNRVIYSDISDDCKPLS-HVPEIYHPLVEKLWPGPLTILLSIPDGSNRNTLSKLTTA 158

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           N  T   R+P     + LI     P+A PSAN S + S T  +H+    +   IPLI+DG
Sbjct: 159 NQPTFACRIPANPIARALIALSDTPIAAPSANASTRPSPTTAEHVF-HDLNGRIPLILDG 217

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIET-------LKRAISVELEYCVDETSTPQS 222
           G   +G+EST+V+      + +LRPGG   E        L +   VE +  + +    ++
Sbjct: 218 GKCSVGVESTVVDGLVTPPM-LLRPGGFTYENILNIGGPLWKECLVETKVNIKDDEKVKT 276

Query: 223 PGMLKSHYAPRSQVRLRAIHVNPR----EALIRFGNVPIKN------------------- 259
           PGM   HY+P+++V L     + +    E L R  ++  K                    
Sbjct: 277 PGMKYRHYSPKAKVILLVPEGDSQIISSERLGRLKSLVDKEIIQQGAKKVAFLNSLHLNK 336

Query: 260 --IENAIISLNLSKTGKLKEAAFNLFNYM-KIADDSGASSIAFSSIPNHGLGIAINNRLE 316
             I+   I  +L  TG  KE   NLF  + K+ ++     I       +  G+AI NRL 
Sbjct: 337 HFIDGKCIHESLGTTG--KEIQANLFALLRKVDEEDNVDLIVVEGTEANEEGLAIMNRLR 394

Query: 317 RAAA 320
           +AA+
Sbjct: 395 KAAS 398


>gi|193215580|ref|YP_001996779.1| Sua5/YciO/YrdC/YwlC family protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089057|gb|ACF14332.1| Sua5/YciO/YrdC/YwlC family protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 315

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 168/326 (51%), Gaps = 23/326 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+   + + ++A  FL     +A PTETVYGL  +  +  A+ +++ +K RPA NPLI H
Sbjct: 1   MTTKVTASTKEAARFLLKDELVAFPTETVYGLGANIFSEEAVHKIFRVKGRPAQNPLIAH 60

Query: 64  VSDIS----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           +S+++    +VK+   V   +  L   F+PGPLTLVL    +  +  + T+ L T   R+
Sbjct: 61  ISNLTELILLVKR---VTASAEKLIDAFFPGPLTLVLP--KSKYVPYVVTSGLDTIGVRM 115

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     +  ++  G  +A PSAN SG+ S T  +++  + +   I  I+ GG S++GLES
Sbjct: 116 PSHQVAQAFLKACGVSVAAPSANLSGRPSPTTWQNV-EADLDGLISCILKGGRSEVGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+   +  V +LR G + +E L+    +++L    D+    + PG    HYAP ++V 
Sbjct: 175 TIVDCTGKAPV-LLRAGAITLEQLQEITPAIKLAEISDDEPA-RCPGTKYKHYAPDAKVV 232

Query: 238 L----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           L      IH  P  A I      I+  E +  SL       ++E A  LF++ +  D   
Sbjct: 233 LIDAPSEIHPEPSSAYIG-----IEQPEASADSLITCSCVSIEEYAHQLFHFFRECDKKQ 287

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
             +I    +   GLG+A+ +RL RAA
Sbjct: 288 VRTIFCQRVAKTGLGLALMDRLTRAA 313


>gi|302665561|ref|XP_003024390.1| hypothetical protein TRV_01457 [Trichophyton verrucosum HKI 0517]
 gi|291188442|gb|EFE43779.1| hypothetical protein TRV_01457 [Trichophyton verrucosum HKI 0517]
          Length = 445

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 147/291 (50%), Gaps = 31/291 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A     + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS    ++
Sbjct: 50  LEAAKAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRDQLE 109

Query: 72  KHASVDP------LSLH-----------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           +   VDP      +  H           L + FWPGPL+++L   S   + P  TANL T
Sbjct: 110 RLL-VDPKQSNGAIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHLPLAPEVTANLPT 168

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P     + LI     P+A PSAN S + S T  +H+  + +   I +I+DGG   
Sbjct: 169 FAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIEMILDGGPCG 227

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETSTPQSPGMLK 227
           +G+EST+V+        ILRPGG+ I+ L+       V++ Y    +   + P++PGM  
Sbjct: 228 VGVESTVVD-GLSSPPAILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPGMKY 286

Query: 228 SHYAPRSQVRLRAIHVNPREALIR----FGNVPIKNIENAIISLNLSKTGK 274
            HY+P+++V L     NP   + R        P    E+A I +  +KT K
Sbjct: 287 KHYSPKARVVLFEPGQNPASVMNRIIADINKQPEWANESAAIGVVRTKTWK 337


>gi|237653845|ref|YP_002890159.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T]
 gi|237625092|gb|ACR01782.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T]
          Length = 370

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 159/339 (46%), Gaps = 52/339 (15%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           + +PTETVYGLA D+ +P A+++++  K RPA +PLI H+  +  + + A+  P  +L L
Sbjct: 33  VGMPTETVYGLAADALDPEAVKKIFAAKGRPADHPLIVHLPSVEHLPQWAAAIPKDALAL 92

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           A+ FWPGPLTL+L    T D+    T    T   RVP       L+  +   LA PSANR
Sbjct: 93  ARAFWPGPLTLILK--RTPDVPDEVTGGQDTVGVRVPAHPVALALLRAFDGGLAAPSANR 150

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
            G+IS T   H+    + + + +I+DGG   +G+ESTI++   +    ILRPG +  E +
Sbjct: 151 FGRISPTTAAHV-HEELGERVAMILDGGACAVGIESTILDFSRDVP-EILRPGAITPEDI 208

Query: 203 KRAI---------------SVELEYCVDETS----------------TPQSPGMLKSHYA 231
            R I               S     C D +                  P+  G L +HYA
Sbjct: 209 ARVIGRRPRVPGESVAETASARAGQCGDASGLAEAAAPNAAADAAQPAPRVSGALAAHYA 268

Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLS--KTGKL-------KEAAF-- 280
           PR+ +RL    V P         +  +    A+++ + S  +  +L         AA+  
Sbjct: 269 PRTPLRL----VEPALLADEAAALAGEGSRVAVLAHSTSDPRDARLSWRSLPADPAAYAQ 324

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            L+  ++  D  GA  I   ++P      A+ +RL RAA
Sbjct: 325 GLYASLRALDGVGADLILIEALPGGPGWRAVADRLGRAA 363


>gi|269798157|ref|YP_003312057.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula DSM 2008]
 gi|269094786|gb|ACZ24777.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula DSM 2008]
          Length = 343

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 164/320 (51%), Gaps = 33/320 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83
           ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI HV +   +K   + V   +  L
Sbjct: 27  VSIPTETVYGLGANGLDPEAMDKIYTAKGRPSDNPLILHVPNSESIKPLVTEVSNTAQLL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141
              FWPGPLT+    L  +D+ P  +T  L     R P     + L+E  G P+A PSAN
Sbjct: 87  MDTFWPGPLTIT---LPKSDLVPDRATGGLPRVALRCPDHELCRALLERAGVPIAAPSAN 143

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG+ S T  + +    +   I  I+D G   IG+EST+V V  + KV ILRPGG+    
Sbjct: 144 ISGRPSPTTAQDVY-HDMKDRISYILDAGSCTIGVESTVVEVH-DDKVIILRPGGITKAQ 201

Query: 202 LKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258
           L+  +S  +EY    V+ T+ P++PGM  +HYAP +   +  +  +P +    F  +  +
Sbjct: 202 LEDVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAP--MTVVVGSPEDVASTFKELSAE 258

Query: 259 NIENAIISLNLSKTGKL--KEAAF--NLFNY----MKIADDSGASSIAFS---------- 300
            +E  I  L   +T  L  ++  F  + F +    + +  D   S + F+          
Sbjct: 259 -VEGPIGCLVSHETYNLIKEDTRFICHCFGHHSDALSLGHDFYKSLLHFNENHVTLILAE 317

Query: 301 SIPNHGLGIAINNRLERAAA 320
            + + G G+AI NR+E+A++
Sbjct: 318 GVDDDGFGVAIMNRMEKASS 337


>gi|326479423|gb|EGE03433.1| SUA5 [Trichophyton equinum CBS 127.97]
          Length = 445

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 134/253 (52%), Gaps = 26/253 (10%)

Query: 10  NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A E + ++ +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALLEAAEAIRNSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106

Query: 69  MVKK-----HASVDPLSLH-----------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++       S  P+  H           L + FWPGPL+++L   S   + P  TANL
Sbjct: 107 QLERLLMDPKQSNGPIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHRPLAPEVTANL 166

Query: 113 KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+  + +   I  I+DGG 
Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIETILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM
Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQTGYKDGALQGKTAPRAPGM 284

Query: 226 LKSHYAPRSQVRL 238
              HY+P+++V L
Sbjct: 285 KYKHYSPKARVVL 297


>gi|238917860|ref|YP_002931377.1| putative translation factor [Eubacterium eligens ATCC 27750]
 gi|238873220|gb|ACR72930.1| putative translation factor [Eubacterium eligens ATCC 27750]
          Length = 351

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 161/341 (47%), Gaps = 34/341 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D     +A + L  G  +A PTETVYGL  D+ +  A  ++Y  K RP+ NPLI H++D+
Sbjct: 14  DKKIYEQAGQILREGGLVAFPTETVYGLGADALDAKASAKIYAAKGRPSDNPLIVHIADV 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
           + +   A   P  +L LA+ FWPGPLT++   L   D  P S T  L T   R+P     
Sbjct: 74  NALYDLAKEVPDKALVLAEKFWPGPLTMI---LKKKDKVPDSITGGLGTVAIRMPSHPVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI + G  +A PSAN SG+ S T  +H++ + +   I +II      IG+ESTI+++ 
Sbjct: 131 AELIRSSGVYIAAPSANTSGKPSPTRAEHVI-NDLSGRIDMIIQDDTVDIGVESTIIDL- 188

Query: 185 CEKKVRILRPGGLEIETLKRAISV-----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
            E+   ILRPG +     + AI        +   + E   P++PGM   HYAP + V   
Sbjct: 189 SEEVPTILRPGYITQAMFEEAIGKTIIDPAIMGSLKEGVVPKAPGMKYKHYAPNADV--- 245

Query: 240 AIHVNPREALIRFGNVPIKNIE---------------NAIISLNLSKTGKLKE---AAFN 281
            I     E ++++ N  I   E               +  I  ++   G   +    A N
Sbjct: 246 TIVEGQHEKVVQYINAQIAEKEAEGHRCAVMATDETKDKYICSDIVSAGHKDDELSVARN 305

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           L+  ++  D      +   S     +G A+ NRL +AA  +
Sbjct: 306 LYAILRDFDKQNIEFVYSESFETKNVGQAVMNRLIKAAGHK 346


>gi|78187540|ref|YP_375583.1| Sua5/YciO/YrdC/YwlC [Chlorobium luteolum DSM 273]
 gi|78167442|gb|ABB24540.1| translation factor SUA5 [Chlorobium luteolum DSM 273]
          Length = 315

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 156/319 (48%), Gaps = 14/319 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS    +A   L+AG  +A PTETVYGL      P A+  L+  K RP+ NPLI HVS
Sbjct: 5   ITDSA--EEAARILNAGKIVAFPTETVYGLGAGIDFPEAVEGLFRAKGRPSDNPLIVHVS 62

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            +  V+  A+ V   +  L + F+PGPLT+V     +  +    TA L+T   R P    
Sbjct: 63  SVEQVEMAAARVTTDARRLMERFFPGPLTIVFP--KSPRVPHSVTAGLETVGIRCPRHPV 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++ +     P+A PSANRSG+ S T  + +    +   I  I+ G  S+IGLESTIV+ 
Sbjct: 121 AREFLSRCCCPVAAPSANRSGRPSATTWQAV-QEDLDGRIDAILKGEASRIGLESTIVDC 179

Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
                V +LR G + +E L+  + S      + E  TP+SPG+   HYAP + +    I 
Sbjct: 180 TGPHPV-MLRAGAVSLEELQSIVPSTTAARPLREGETPKSPGLKYPHYAPEATI----IP 234

Query: 243 VNPREALIRFGNVPIKNIENAIISLNL-SKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
           +   E     G         A   +    +   L+  A +LF++ +  D    S+I    
Sbjct: 235 IEKEETPSPEGRAAYIGTAPAPKGMAFVEQCPDLEAYARSLFHFFRECDRRAISTIYCEL 294

Query: 302 IPNHGLGIAINNRLERAAA 320
            P  G+G A+ +R+ RAA 
Sbjct: 295 PPTAGIGRALLDRINRAAG 313


>gi|326471329|gb|EGD95338.1| translation initiation protein Sua5 [Trichophyton tonsurans CBS
           112818]
          Length = 445

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 134/253 (52%), Gaps = 26/253 (10%)

Query: 10  NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A E + ++ +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALLEAAEAIRNSDIPVAFPTETVYGLGADATRSRAVQGIYKAKQRPSDNPLIVHVSSRD 106

Query: 69  MVKK-----HASVDPLSLH-----------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++       S  P+  H           L + FWPGPL+++L   S   + P  TANL
Sbjct: 107 QLERLLMDPKQSNGPIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHRPLAPEVTANL 166

Query: 113 KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+  + +   I  I+DGG 
Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVF-TDLQGRIETILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM
Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQTGYKDGALQGKTAPRAPGM 284

Query: 226 LKSHYAPRSQVRL 238
              HY+P+++V L
Sbjct: 285 KYKHYSPKARVVL 297


>gi|219684274|ref|ZP_03539218.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii PBr]
 gi|219672263|gb|EED29316.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii PBr]
          Length = 335

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 162/333 (48%), Gaps = 26/333 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKR   NPLI HV 
Sbjct: 6   IIRSNQIQKAAKLIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P    
Sbjct: 66  TVKKIKELSEYIPKSALMLIKRFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKI 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    P+A PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALNLIKASKVPIAAPSANISKRPSATNFEMAL-----KELNGLVRGIIKLEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234
           EST++    +  V ILRPG +  + +++ +     + Y   +    +SPG +  HY P+ 
Sbjct: 179 ESTVIGFDLKDNVIILRPGAITKKMIEKGLQGKYTVNYAETKIELEKSPGNMIEHYKPKI 238

Query: 235 QVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLFNYMK 287
            V L     N R  L +   + I    + + + +      N++    L+E A NL+  + 
Sbjct: 239 PVYLFKNQDNIRRYLNKDTKILITKPTLNSYLFNFLWDKKNITVFNTLEEYAQNLYKEL- 297

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++    I    + +  LG +INNR+ +A++
Sbjct: 298 VNSENSYKQILSEFVKDEELGYSINNRIRKASS 330


>gi|322435110|ref|YP_004217322.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162837|gb|ADW68542.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9]
          Length = 349

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 161/322 (50%), Gaps = 32/322 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--LSLH 82
           +A PTETVYGL  ++ +PTA+ +++E K+RP+ +PLI H+++  M+ + A++D    +  
Sbjct: 35  VAFPTETVYGLGANALDPTAVAKIFEAKQRPSWDPLIVHIANQQMLAEIATLDQQGTAAR 94

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
           L   FWPGPLTL+L    T  I    TA+      R+P      +LI   G P+A PSAN
Sbjct: 95  LIDAFWPGPLTLLLP--RTQAIPDAVTASRPLVGVRMPAHPVALELIRQTGLPIAAPSAN 152

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
                S T   H+L+  +   I  I+DGG + +GLEST+  +  +  + + RPG + ++ 
Sbjct: 153 TFSHTSPTTAAHVLAD-LDGRIDAILDGGPTTVGLESTVAEITPDGLI-VYRPGAVTLDM 210

Query: 202 LKRAISVELEYC--VDETSTP----QSPGMLKSHYAPRSQVRL----------------R 239
           L   +     +     E S+P     SPG+   HYAP+++V L                 
Sbjct: 211 LNNLLGQGTAHLHIPPERSSPIESLPSPGVGIRHYAPKARVLLIDSPEDCAANWDLFIEN 270

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
              V+ +  L+   N P    E+A I    S + K +  A  LF+ ++  DD   + I  
Sbjct: 271 LRQVDDKLGLMLPDNWPAP--EHASIFRWGSWSDK-ETLAHRLFSGLRALDDEHVTHIIC 327

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
                 G+G AI +RL++AA P
Sbjct: 328 PLPSPEGMGAAIRDRLQKAAKP 349


>gi|299067859|emb|CBJ39070.1| conserved protein of unknown function, translation factor domain,
           SUA5 type [Ralstonia solanacearum CMR15]
          Length = 336

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 161/321 (50%), Gaps = 18/321 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A   P ++L L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 76  YWADDVPGIALQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSVGLRCPSHPVAQALLS 133

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTIV++ + 
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIVDLSRL 191

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIH 242
           ++ V   +LRPG +  E + R   V     + + + P++ G L++HYAPR+ +  L A  
Sbjct: 192 DQGVGPVLLRPGAITPEDIGRVTGVMP--SLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249

Query: 243 VNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAFN-LFNYMKIADDSGASSIAF 299
           V  R A +  G   V +    +     +         A  N L+  ++  D  G  +I  
Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQHAAPATPAAYANTLYALLRELDRGGYHAIWL 309

Query: 300 SSIPNHGLGIAINNRLERAAA 320
            ++P+     A+N+RL RAAA
Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330


>gi|168177474|ref|ZP_02612138.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum NCTC
           2916]
 gi|226947365|ref|YP_002802456.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670936|gb|EDT82910.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum NCTC
           2916]
 gi|226842540|gb|ACO85206.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 351

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 171/338 (50%), Gaps = 32/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S +
Sbjct: 14  DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKM 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124
             ++K     P ++  L   FWPGP+T++   L   DI P  T A L +   R+P     
Sbjct: 74  KDIEKLVQKIPSVAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 INPPC-ILRPGGITLEMLKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282
              +N              +A  + G +   + I+N     ++S+   K   L   A NL
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYRKGDVVSIGSRKD--LNTIAHNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344


>gi|313903648|ref|ZP_07837038.1| Sua5/YciO/YrdC/YwlC family protein [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466201|gb|EFR61725.1| Sua5/YciO/YrdC/YwlC family protein [Thermaerobacter subterraneus
           DSM 13965]
          Length = 493

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 109/199 (54%), Gaps = 7/199 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+R+A   L  G  +A PTETVYGL  D+ NP A+ R++  K RPA NPLI HV+  
Sbjct: 76  DEAAVRRAGAILRQGGLVAFPTETVYGLGADALNPRAVARIFAAKGRPADNPLIVHVTGP 135

Query: 68  SMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
                   AS       LA+ FWPGPLTLVL   +   +  +  A L T   R P     
Sbjct: 136 EQAGPELVASWPEAGRRLAERFWPGPLTLVLP--AGPAVPAVVRAGLPTVAVRCPAHPVA 193

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G P+A PSANRSG+ S T  + +  + +   + +++D G   +G+EST+V+V 
Sbjct: 194 QALIAAAGTPVAAPSANRSGRPSPTRAEDVW-ADLGPHLDMLLDAGPVPVGVESTVVDVT 252

Query: 185 CEKKVRILRPGGLEIETLK 203
                R+LRPGG+  E L+
Sbjct: 253 VWPP-RLLRPGGVPAEDLE 270



 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           +     + L+L    +  + A  LF  ++ AD  GA+ +   ++P HGLG A+ NRL +A
Sbjct: 416 DFARGPVVLDLGSRHRPDQQARRLFRALRAADALGATRVLALAVPEHGLGRAVMNRLRKA 475

Query: 319 AA 320
           AA
Sbjct: 476 AA 477


>gi|48478016|ref|YP_023722.1| Sua5 superfamily-related protein [Picrophilus torridus DSM 9790]
 gi|48430664|gb|AAT43529.1| Sua5 superfamily-related protein [Picrophilus torridus DSM 9790]
          Length = 337

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 158/330 (47%), Gaps = 30/330 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + ++ A + +  G  +  PTETVYGL  ++ +  A  +++  K RPA NPLI  VS+ 
Sbjct: 8   DDSGIKIAADIIRKGGTVVFPTETVYGLGANALSSEASAKIFRAKDRPADNPLIVTVSNF 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTK 125
           +MVK  + +D   L + +  WP PLTL   LL    I P + TA + T C R P      
Sbjct: 68  NMVKDVSYIDCKLLKIMEGVWPAPLTL---LLKKKSIVPDIVTAGMDTVCVRFPKNEIAL 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN + + SI + K  +   +   +  IID G  + G+ESTI++   
Sbjct: 125 RLISEAGVPVAAPSANIATRPSIVDSKDAIDE-LDGRVDAIIDAGRVEYGVESTIIDATV 183

Query: 186 EKKVRILRPGGLEIETLKR---AISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           E    +LRPG   +E ++R    I++  +     E++   +PGM   HYAP  ++ L   
Sbjct: 184 EP-YNLLRPGAFPVEEIERLFGKININPVARGYKESNIALTPGMKYRHYAPSKKLILI-- 240

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKL------------KEAAFNLFNYMKIA 289
                E +  F +    +     ++L  S+  K              EAA NLF   ++ 
Sbjct: 241 -----ENIDDFRSFVSSDRARDFLALCSSENSKYVKYDKIILGRDAYEAAHNLFYDFRLL 295

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           D S        + P  G+G  + NR+ +A+
Sbjct: 296 DRSDKQYGVIQAFPETGIGFGLMNRIRKAS 325


>gi|28210066|ref|NP_781010.1| SUA5 protein [Clostridium tetani E88]
 gi|28202501|gb|AAO34947.1| SUA5 protein [Clostridium tetani E88]
          Length = 350

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 169/337 (50%), Gaps = 31/337 (9%)

Query: 9   SNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            N + K C E L  G  +  PTETVYGL  ++    A+++++E K RP  NPLI H+S++
Sbjct: 14  ENKILKECGEALRNGKLVVFPTETVYGLGANALKEDAVKKIFEAKGRPQDNPLIVHISEL 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +       P ++  L + FWPGP+T++L    ++ I   ++  L +   R+P     +
Sbjct: 74  EEIAPLVEEVPKIAYKLMEKFWPGPMTIILP--KSSLIPSRTSGGLNSVGIRMPSNEIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI+    P+A PSAN SG+ S TN++  +   +  ++  II G    +G+EST+++   
Sbjct: 132 KLIKEAKVPIAAPSANISGRPSPTNIETCI-EDLKGKVDYIIGGEKCDVGVESTVIDCTI 190

Query: 186 EKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LR 239
                +LRPGG+ +E LK       I   +    ++   P++PGM   HYAP+++++ +R
Sbjct: 191 YPPC-VLRPGGITLEMLKNIDNKIYIDPAIMAGDNKDLKPKAPGMKYRHYAPKAELKIIR 249

Query: 240 AIHVNPREALIRF--------GNVPIK--------NIENAIISLNLSKTGKLKEAAFNLF 283
               N  + + +          NV I          +   +ISL   +   L+  A NLF
Sbjct: 250 GDLKNSVDKIKKLTDEYESQGKNVGIMATDETREFYVNGQVISLGGREN--LETIARNLF 307

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           + ++  D      I   +    G+GIAI NRL+++A 
Sbjct: 308 SVLRSFDSKNVDIILSETFEEKGIGIAIMNRLKKSAG 344


>gi|219685554|ref|ZP_03540371.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii Far04]
 gi|219672953|gb|EED29975.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii Far04]
          Length = 335

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 162/333 (48%), Gaps = 26/333 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKR   NPLI HV 
Sbjct: 6   IIKSNQIQKAAKLIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPLIVHVD 65

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            +  +K+ +   P S L L K F PGPLT VL    +  I    + NL T   R+P    
Sbjct: 66  TVKKIKELSEYIPKSALMLIKRFSPGPLTYVLK--KSIKISRFVSGNLDTVAIRIPANKI 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-------KIGL 176
              LI+    P+A PSAN S + S TN +  L     KE+  ++ G I         IG+
Sbjct: 124 ALNLIKASKVPIAAPSANISKRPSATNFEMAL-----KELNGLVRGIIKLEENKDFNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234
           EST++    +  V ILRPG +  + +++ +     + Y   +    +SPG +  HY P+ 
Sbjct: 179 ESTVIGFDLKDNVIILRPGAITKKMIEKGLQGKYTVNYAETKIELEKSPGNMIEHYKPKI 238

Query: 235 QVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLFNYMK 287
            V L     N R+ L +   + I    + + + +      N+     L+E A NL+  + 
Sbjct: 239 PVYLFKSQDNIRKYLNKDTKILITKPTLNSYLFNFLWDKKNIIVFNTLEEYAQNLYKEL- 297

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++    I    + +  LG +INNR+ +A++
Sbjct: 298 VNSENSYKQILSEFVKDEELGYSINNRIRKASS 330


>gi|159040867|ref|YP_001540119.1| Sua5/YciO/YrdC/YwlC family protein [Caldivirga maquilingensis
           IC-167]
 gi|157919702|gb|ABW01129.1| Sua5/YciO/YrdC/YwlC family protein [Caldivirga maquilingensis
           IC-167]
          Length = 358

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 157/338 (46%), Gaps = 31/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +R A + +  G  +A PTETVYGL   + N  AIRR+Y +K RP  NP I H+S  
Sbjct: 19  DMALIRIAADVILKGGLVAFPTETVYGLGASTYNDDAIRRIYAVKNRPMDNPSIVHISSF 78

Query: 68  SMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           + + + A   P  L    K+ WPGPLT++L    ++ I  +++  L T   R+P      
Sbjct: 79  NQLYEVAEDIPSELEERLKVAWPGPLTVILR--KSSRISEVASCGLSTVAVRMPAHPVAL 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     P++ PSAN SG+ S T  +H++   +  +I LIIDGG +  G+ESTI++   +
Sbjct: 137 ALIRESTPISAPSANISGKPSPTRAEHVI-KDLWGKIDLIIDGGETFFGVESTIIDYTKK 195

Query: 187 KKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             V + RPG   +E L+R        E    + +     +PGM   HYAP     L    
Sbjct: 196 PPV-LYRPGPFTVEELRRIFGEIKVPEQALGLGQFKEALAPGMKYRHYAPDKP--LIVTE 252

Query: 243 VNPREALIR----FGNVPIKNIENAII----------------SLNLSKTGKLKEAAFNL 282
            +  + L++      +  +K  +  ++                 +     G L   A NL
Sbjct: 253 CSSLDGLVKLTLDLASDEVKRGKRVVVLCSSETCSTYVKAGFKVIEAGSRGNLYTVAKNL 312

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F+ +++ D            P  G+G+AI NRL +A+ 
Sbjct: 313 FHSLRLIDSMDVDLAVAEGYPEVGIGLAIMNRLRKASG 350


>gi|307298419|ref|ZP_07578222.1| Sua5/YciO/YrdC/YwlC family protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915584|gb|EFN45968.1| Sua5/YciO/YrdC/YwlC family protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 345

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 161/342 (47%), Gaps = 46/342 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA  F+  G  +  PTETVYGL  ++ + +AI ++Y  K RP  NPLI HVS  
Sbjct: 14  DEFRLKKAARFIRDGELVVFPTETVYGLGANALDESAISKIYHAKGRPQDNPLIVHVSSR 73

Query: 68  SMVKKHASVDPLSLH--LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            MV    S + LS +  L    WPGP+TL+        I    TA L T   R P     
Sbjct: 74  EMVADLVSQN-LSEYSALMDTVWPGPVTLIFR--KRKRIPDSVTAGLDTVAIRFPSHPVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLIE    P+A PSAN SG+ S T  +H++   +   +  II  G +  GLESTI+++ 
Sbjct: 131 SKLIELSCVPVAAPSANLSGKPSPTREEHVV-EDMDGRVSCIILSGSTVFGLESTIIDLS 189

Query: 185 CEKKVRILRPGGLEIETLKRAI---------SVELEYCVDETSTPQSPGMLKSHYAPR-- 233
            E+ V +LRPG ++ + LK  +         S   +Y  D    P SPG+   HY+P   
Sbjct: 190 RERPV-LLRPGPIDPDQLKGVLPDLQIPGFASGREQYLGD----PLSPGLKYRHYSPDIP 244

Query: 234 ------------SQVRL----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277
                       S+V +    ++  V   E L  +  V +K +        L     L E
Sbjct: 245 LILVEGELGLVVSKVGIIAGRKSSLVLCSEELRDYYPVQVKKV-------VLGSRSNLLE 297

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            A NLF  ++  ++   S I     P  G+G+AI NRL +AA
Sbjct: 298 VASNLFKELRDKENMSFSQIIAEPFPETGVGLAIMNRLRKAA 339


>gi|226292280|gb|EEH47700.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis
           Pb18]
          Length = 544

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 36/265 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ AL ++ E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RPA NPLI HVS 
Sbjct: 112 EAKALLESAEALRMSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPADNPLIVHVSS 171

Query: 67  ISMVKK----------HASVD----------------PLSLHLAKLFWPGPLTLVLDLLS 100
              +++          H S D                P+   L   FWPGPLT++L   +
Sbjct: 172 REQLQRILRSHSSRPDHGSSDSRKTGNQEREETNLIPPIYEPLISKFWPGPLTIILPNPT 231

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 232 PSPLAPEVTSTLTTFGARMPSSPLARLLIHLTDRPLAAPSANASTKPSPTTAQHVF-TDM 290

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213
              I +I+DGG   +G+EST+V+        ILRPGG+ IE ++     E       +  
Sbjct: 291 QGRIDIILDGGPCGVGVESTVVDGLLHPPA-ILRPGGIGIEEIRACPGWEDVRVGYKDGA 349

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238
           +     P++PGM   HY+P+++V L
Sbjct: 350 LQGKEAPRAPGMKYKHYSPKAKVVL 374


>gi|224824251|ref|ZP_03697359.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002]
 gi|224603670|gb|EEG09845.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002]
          Length = 320

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 159/324 (49%), Gaps = 24/324 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    + +A   L  G  +A+PTETVYGLA  + +P AI +++  K RPA +PLI H+ D
Sbjct: 6   THPEHIDRAARLLREGGLVALPTETVYGLAACAEDPQAIAKVFSAKGRPADHPLIVHLPD 65

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           ++ + + A   P ++  LA+ FWPGPLTLVL   +   + PL T    T   R       
Sbjct: 66  LAHLTRWACRIPSVAFRLAEAFWPGPLTLVLP--AAPAVSPLITGGQDTIAVRWSAHPLF 123

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +++  G  +  PSAN  G IS T+  H+L   +   I  ++DGG  ++G+ESTI+++ 
Sbjct: 124 QAVLDQLGSAVVAPSANPFGHISPTSAAHVL-KHMEGRIDAVLDGGDCRVGVESTILDLS 182

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR---------SQ 235
              + +ILRPG +    L   + +           P+ PG L SHYAPR          +
Sbjct: 183 -GPEAKILRPGCIGASQLAAYLPLVER---PAAPAPRVPGALDSHYAPRLPCHRFEHDER 238

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
             L     + + A I F  +P+    + ++  + +        A  ++  +  A+ SG+ 
Sbjct: 239 AYLSQGVPSGKCAFIGFRELPMSTHRSYLLPADPAAY------ASQIYAVLHQAESSGSE 292

Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319
           SI     P+    + + +RL RA+
Sbjct: 293 SILIEMPPDTPEWLHVRDRLLRAS 316


>gi|258517250|ref|YP_003193472.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780955|gb|ACV64849.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 343

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 145/316 (45%), Gaps = 32/316 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  ++ +  A+RRL++ K RPA NPL  HV+D+     +    P   H L
Sbjct: 34  VAFPTETVYGLGANALDSRAVRRLFQAKARPADNPLTLHVADLKTAFAYLKDIPQEAHAL 93

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           A  FWPGPLTLVL            T        R+P       LIE  G PL  PSAN 
Sbjct: 94  AGQFWPGPLTLVLPFQGHLPAE--VTGGRPALGVRMPDHPVALALIEQSGVPLVAPSANL 151

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ S T   H+L   +   I  ++DGG S+ GLEST+++   EK V +LRPG L  E L
Sbjct: 152 SGRPSPTTADHVL-QDLSGRIEAVLDGGPSEWGLESTVIDFTGEKPV-LLRPGVLTQEDL 209

Query: 203 KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN--- 259
            R  +  LE      +    P    +HY P +   L     + R  L + G + +     
Sbjct: 210 -RPFTGSLEL-----TNKAIPSAKYAHYTPHAAFLLVEGE-DDRVVLEKIGQMALHYEKQ 262

Query: 260 ---------------IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
                           ++ I +   SK+  +  AA  LF  M+  D+     I  +    
Sbjct: 263 GQKVGLLLYEEDAFLFQSYIYTTAGSKSRPVSVAA-GLFQAMRELDNRCVDIIICAGFHG 321

Query: 305 HGLGIAINNRLERAAA 320
            GLG+AI NRL  AA 
Sbjct: 322 QGLGLAIQNRLRLAAG 337


>gi|160937847|ref|ZP_02085206.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439286|gb|EDP17039.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC
           BAA-613]
          Length = 412

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 122/237 (51%), Gaps = 17/237 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L +G  +A PTETVYGL  ++ +  A R++Y  K RP+ NPLI HVS +  V 
Sbjct: 19  LKEAASILRSGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHVSCVEEVA 78

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P     L + FWPGPLT++     +  +   +T  L T   R+P      +LI 
Sbjct: 79  PLVKEIPEAGRKLMEAFWPGPLTMIFP--KSEKVPYGTTGGLDTVAIRMPDDPVANRLIA 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV+V      
Sbjct: 137 LAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIEMIIDGGPVGIGVESTIVDVSSAVP- 194

Query: 190 RILRPGGLEIETLKRAISVELEYCVD--------ETSTPQSPGMLKSHYAPRSQVRL 238
            +LRPG + +E L   +    E  VD            P++PGM   HYAP++ + L
Sbjct: 195 SVLRPGAITMEMLAEVLG---EVSVDPAILGPLSADVRPKAPGMKYKHYAPKADLTL 248


>gi|121608514|ref|YP_996321.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553154|gb|ABM57303.1| translation factor SUA5 [Verminephrobacter eiseniae EF01-2]
          Length = 348

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 155/331 (46%), Gaps = 42/331 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           + +PTETVYGLA D+ N  A+ +++  K RP  +PLI HV+    +   A   P  +  L
Sbjct: 24  LGLPTETVYGLAADAGNDAAVAQIFAAKGRPRDHPLIVHVASAEGIAHFARALPAFAQAL 83

Query: 84  AKLFWPGPLTLVLD--------LLSTTD-------IHPLSTANLKTACFRVPCGFTKKLI 128
           A  FWPGPLTL+L              D        HP++ A L+      P G T +  
Sbjct: 84  ADAFWPGPLTLILPRRPGVASAAAGGQDSVGLRCPAHPVAQALLRACAAPPPEGGTDQGH 143

Query: 129 ETYGHP---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVN 182
           +  G P   LA PSANR G++S T  +H+   L +++     L++DGG   +G+ESTIV+
Sbjct: 144 DQGGPPIRGLAAPSANRFGRVSTTTAQHVQDELGAAL-----LVLDGGPCALGIESTIVD 198

Query: 183 VQCEKKVRI-LRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL-- 238
             C + + + LRPG +    +  A  +  L         P++PG L +HYAPR++VRL  
Sbjct: 199 --CTRGLPVLLRPGSITRAQIAAACGIAPLSRAELPALDPRAPGTLAAHYAPRAKVRLMD 256

Query: 239 -RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------KEAAFNLFNYMKIA 289
            RA+  +                  A  +L +   G +           A  LF  ++  
Sbjct: 257 ARALQTSLDLWAASAPAATAPMAVYARSALRMPAPGPILRRMPDDASATAQQLFAVLRSL 316

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           DD+G   I   + P       + +RL+RAAA
Sbjct: 317 DDAGVPLIWIETPPATPDWEGVRDRLQRAAA 347


>gi|152981358|ref|YP_001354532.1| hypothetical protein mma_2842 [Janthinobacterium sp. Marseille]
 gi|151281435|gb|ABR89845.1| Uncharacterized conserved protein, putative translation factor
           [Janthinobacterium sp. Marseille]
          Length = 340

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 160/333 (48%), Gaps = 33/333 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+R A   L+ G  +A PTETVYGL  D+ NP A+  +Y  K RP+ +P+I H++  
Sbjct: 7   DWPAIRDAARRLEQGELVAFPTETVYGLGADAENPAAVANIYAAKGRPSNHPVIVHLAPE 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVL-------DLLSTTDIHPLSTANLKTACFRV 119
           + +   A SV P +  L  +FWPGPLTL+L       D +S        +  L+     V
Sbjct: 67  ADLNYWAQSVSPDAQKLIAVFWPGPLTLILKRAVHIPDAVSGGQ----DSIGLRCPSHPV 122

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGL 176
                +   +  G  +A PSAN+ G +S T  +H+           +  I+DGG S++G+
Sbjct: 123 AQALLRAFKDGKGG-VAAPSANKFGHVSPTTAQHVHNEFGGDAGSLLTCILDGGQSEVGI 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ESTIV++     V +LRPG +  E +   I   L    D+ + P++ G L+SHYAP + V
Sbjct: 182 ESTIVDMSRGHAV-LLRPGHISAEQIAAVIGY-LPASPDQ-AAPRASGTLESHYAPLTPV 238

Query: 237 ----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                      L+ +++  R A +    V    +  A ISL  +        A +L+  +
Sbjct: 239 VLVDGEHLLAVLQKLNLRGRRAALMQYAVDAMPLVAASISLPDTPIAY----AHDLYAAL 294

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +  DD  A  I   + P       +N+RL RAA
Sbjct: 295 RAMDDVHADVIVVQTPPTDVAWSGVNDRLRRAA 327


>gi|134095773|ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC family protein [Herminiimonas
           arsenicoxydans]
 gi|133739676|emb|CAL62727.1| Conserved hypothetical protein, putative translation factor
           [Herminiimonas arsenicoxydans]
          Length = 339

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 163/335 (48%), Gaps = 37/335 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV--- 64
           D  A+  A   L+ G  +A PTETVYGL  D+ NP A+ ++Y+ K RP+ +P+I H+   
Sbjct: 6   DLTAIADAARRLERGELVAFPTETVYGLGADAENPLAVAKIYQAKGRPSNHPVIVHLAPE 65

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPC 121
           +DI+   K   V P +  L   FWPGPLTL+L   + +  T      +  L+     V  
Sbjct: 66  ADIAYWAK--DVSPEARQLIAAFWPGPLTLILKRANHIPDTVAGGQDSIGLRCPSHPVAQ 123

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL---IIDGGISKIGLES 178
              +   +  G  +A PSAN+ G +S T  +H+    +     L   ++DGG S++G+ES
Sbjct: 124 ALLRNFKQGKGG-IAAPSANKFGHVSPTTAQHVRDEFVDDTNGLLTCVLDGGQSEVGIES 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-- 236
           TIV++   + V +LRPG +    +   + V     + + + P++ G L++HYAP + V  
Sbjct: 183 TIVDMSRGRAV-LLRPGHISAAQIGAVLGV--APLLPDAAAPRASGTLEAHYAPHTPVVL 239

Query: 237 --------RLRAIHVN-PREALIRF---GNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                    L+ +H +  R AL+       VP      A  S+ L     L   A +L+ 
Sbjct: 240 LEREQMHEALQQLHAHGKRVALMHHSFTATVP------AAASIFLPAQPALY--AHDLYA 291

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++  DD+ A  I   S P       +N+RL RAA
Sbjct: 292 ALRAMDDAHADVIMVESPPGDEAWNGVNDRLRRAA 326


>gi|153938602|ref|YP_001389505.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str.
           Langeland]
 gi|152934498|gb|ABS39996.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str.
           Langeland]
 gi|295317606|gb|ADF97983.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str.
           230613]
          Length = 351

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 38/341 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S I
Sbjct: 14  DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKI 73

Query: 68  ----SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG 122
                +VKK   + P++  L   FWPGP+T++   L   DI P  T A L +   R+P  
Sbjct: 74  KDIDELVKK---IPPIAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSN 127

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI   G P+A PSAN SG+ S T+++  +   +   + +I+ G  S++G+EST++
Sbjct: 128 KIAMELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVI 186

Query: 182 NVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           +        ILRPGG+ +E +K       I   +    D+   P++PGM   HYAP++ +
Sbjct: 187 DCTINPPC-ILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPL 245

Query: 237 RLRAIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAA 279
           ++    +N              +A  + G +   + I+N     ++S+   K   L   A
Sbjct: 246 KIIKGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LNTIA 303

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 304 HNLFYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344


>gi|317495537|ref|ZP_07953905.1| Sua5/YciO/YrdC/YwlC family protein [Gemella moribillum M424]
 gi|316914351|gb|EFV35829.1| Sua5/YciO/YrdC/YwlC family protein [Gemella moribillum M424]
          Length = 343

 Score =  129 bits (323), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 173/345 (50%), Gaps = 37/345 (10%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I++I+ SN       K   +      IAIPTETVYGL+ D+ +  A+ ++YE K RP+ 
Sbjct: 4   EIINISKSNNKEEIYNKLITYYKDNKLIAIPTETVYGLSADATSDEAVCKIYEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           NPLI H  +++ +  +  VD     + KL   FWPGP+TL+L+      I    +A L T
Sbjct: 64  NPLIVHFYEMNQL--NDIVDYQDERVDKLIENFWPGPMTLILNAKENNGISKKVSAGLST 121

Query: 115 ACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P   T +++++     LA PSAN SG+ S T  +H+    +  +I +II+   S 
Sbjct: 122 LAVRMPSNKTARQILKETKVLLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSD 180

Query: 174 IGLESTIVNVQCEKK-VRILRPGGLEIETLK-----RAISVELEYCVDETSTPQSPGMLK 227
           IGLEST+++  C +  + I RPG +  E ++      ++    E  VD T TP +PGM  
Sbjct: 181 IGLESTVID--CTRTPLVIARPGEITKEDIEGILGLGSVKYNDEVMVD-TQTPIAPGMKY 237

Query: 228 SHYAPRSQVRLRAIHVNPREALIRF--------GNVPIKNIENAIISLNLS------KTG 273
            HY+P +++     + +  E  + F        G +  K+ E    +LN+S         
Sbjct: 238 RHYSPEAEL---LYYEDSLEKALEFLKTKNKKTGFITYKSNEYLFENLNISVKYLADNEK 294

Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
            ++++  NL+N ++  D+     I    I      IA+ NRL +A
Sbjct: 295 SVEQSNKNLYNILREFDEEKVEEIYILPIKETKENIALLNRLNKA 339


>gi|296135279|ref|YP_003642521.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12]
 gi|295795401|gb|ADG30191.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12]
          Length = 334

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 154/315 (48%), Gaps = 13/315 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L+AG  + +PTETVYGLA D+ N  A+ ++Y  K RPA +P+I H+   + +   
Sbjct: 17  EAVRRLEAGELVGLPTETVYGLAADAENAQAVAKIYAAKGRPADHPVIVHIHRAADLGHW 76

Query: 74  ASVDPL-SLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           AS  P  +  LA  FWPGPLTL+L       D      + +   C   P       I   
Sbjct: 77  ASDVPEPARKLAAAFWPGPLTLILPRKPGVADACAGGQSTIGLRCPSHPVAQAVLAIFKG 136

Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           G   LA PSANR G+IS T   H+  + +  ++ L++DGG   +G+ESTIV+   +   R
Sbjct: 137 GQGGLAAPSANRFGRISPTTAAHV-HAELGDDL-LVLDGGACAVGIESTIVDCTAQPP-R 193

Query: 191 ILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPR-- 246
           ILRPG L+   + + + V E +      S P+  G+L +HYAPR+ ++      +N R  
Sbjct: 194 ILRPGQLQAADIAQTLGVAEADLLRPAESAPRVAGVLPAHYAPRTPLQWCSREQINARWE 253

Query: 247 ---EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
              +A  R G +       A  S  ++        A  L+  ++  D +G   I    +P
Sbjct: 254 IDADAGRRIGVLAFPPQPRAPHSSWVTLPADPAAYAQQLYAVLRKLDAAGLEEICVEVLP 313

Query: 304 NHGLGIAINNRLERA 318
                +A+ +RL RA
Sbjct: 314 PSPAWLALRDRLTRA 328


>gi|315123100|ref|YP_004065106.1| putative translation factor [Pseudoalteromonas sp. SM9913]
 gi|315016860|gb|ADT70197.1| putative translation factor [Pseudoalteromonas sp. SM9913]
          Length = 335

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 164/327 (50%), Gaps = 33/327 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L AG  +A+PTETVYGLA D+ N  A+ +++  K RP  +PLI H+ ++S V 
Sbjct: 16  INQAVALLKAGECVALPTETVYGLAADASNSDAVAKIFAAKGRPTNHPLIVHIPELSHVH 75

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC--GFTKKLI 128
             A +V+  ++ LA+ FWPGPLTL+L+  +  +++   T  L +   RVP    F   ++
Sbjct: 76  HWAKNVNKAAITLAEAFWPGPLTLILN--AKDNLNSPVTGGLNSIGLRVPAHPQFL-AVL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +     LA PSANR  Q+S  N  H++   +   I  +++GG   +G+ESTIV+   E +
Sbjct: 133 KQLNTGLAAPSANRYKQLSPINTAHVM-RDLNGRISAVLEGGQCDVGIESTIVDATTE-Q 190

Query: 189 VRILRPGGLEIETL--KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           +RILRPG +    +  K  ++V      +E      PG +K+HY P +     AI +N  
Sbjct: 191 LRILRPGPISAADILQKTGLNVTTPLSHNEA----VPGNVKAHYQPHAP----AILINSA 242

Query: 247 EALIRFGNVP---------IKNIENAIISLNLSKTGKLK------EAAFNLFNYMKIADD 291
           +      N P             E  +++ ++S     K      E A N++  +   D+
Sbjct: 243 DFPSVLSNTPHLQTHYLIYSTKAEQQLLANHISPQYITKLSACPVEYAKNMYKTLHHIDE 302

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318
           +   +I     P      A+N+RL RA
Sbjct: 303 TTPMNIYIEKPPVSSKWGAVNDRLSRA 329


>gi|330684783|gb|EGG96476.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           VCU121]
          Length = 347

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           L+ GL +A+PTETVYGL  D+ N  A+ ++YE K RP+ NPLI H+ D+S +      V+
Sbjct: 29  LNGGL-VALPTETVYGLGADATNQEAVSQIYEAKGRPSDNPLIVHIHDMSQMNDFIDKVE 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L S   + P  T  L +   R+P     + +++    P+A
Sbjct: 88  PRVQQLMETFWPGPISFILPLKSGY-LCPKVTGGLNSIAVRMPSHPIGRGVLQQIDKPIA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T  +H+    +   I  II+G  S+ GLEST+++   +   RI RPG 
Sbjct: 147 APSANISGRPSPTTFEHVY-QDLNGRIDGIINGDQSEEGLESTVLDC-TQYPFRIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL 238
           +    L+  I   +E    +E S P +PGM   HY+P + V +
Sbjct: 205 ITKMMLENVIPNCIESSNYNEASQPIAPGMKYKHYSPDTPVTI 247


>gi|312897941|ref|ZP_07757354.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera micronuciformis
           F0359]
 gi|310620975|gb|EFQ04522.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera micronuciformis
           F0359]
          Length = 350

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 156/333 (46%), Gaps = 25/333 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N L +A   +  G  +  PTETVYG+  +  +  A R +Y  K RP+ NPLI  V D 
Sbjct: 15  DKNVLEEAGRLIRQGELVIFPTETVYGIGANGLDAAACRAIYTAKGRPSDNPLILTVPDK 74

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           + V+   S + PL+  L + FWPGPLTLVL    T  +   +T  L T   R P     +
Sbjct: 75  AGVEAVVSYLPPLAETLIEKFWPGPLTLVLPRKDT--VPDAATGGLDTVALRCPDHAGCR 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + ++  G P+A PSAN SG+ S T         +   + +I+DGG   +G+ESTIV V  
Sbjct: 133 EFLKAAGVPVAGPSANLSGRPSPTTASEAF-HDMEGRVAMILDGGSCTVGVESTIVEV-L 190

Query: 186 EKKVRILRPGGLEIETLKR-AISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           +  V +LRPG +  E L   A  V  + + V     P++PGM   HYAP + VR+     
Sbjct: 191 DNVVTVLRPGAVTEEMLAEVAPYVTTDTHLVTGKGVPKAPGMKYRHYAPEAPVRVFVGSA 250

Query: 244 NPREALI------------RFGNVPIKN-IENAIISLN----LSKTGKLKEAAFNLFNYM 286
           +     +            R G +  +  IE + ++          G   E A  L+  +
Sbjct: 251 DQVSKAVGEVRTAAENDGKRLGYLLSREVIEKSEVTGKDVYCWGTHGNKTELAKELYRGL 310

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
              D+     I    +   G+G A+ NR+++AA
Sbjct: 311 LFFDEHPVDLIVAEGVETGGIGTAVMNRMKKAA 343


>gi|322804412|emb|CBZ01962.1| sua5 YciO YrdC YwlC family protein [Clostridium botulinum H04402
           065]
          Length = 351

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 172/341 (50%), Gaps = 38/341 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S I
Sbjct: 14  DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISKI 73

Query: 68  ----SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG 122
                +VKK   + P++  L   FWPGP+T++   L   DI P  T A L +   R+P  
Sbjct: 74  KDIDELVKK---IPPIAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSN 127

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI   G P+A PSAN SG+ S T+++  +   +   + +I+ G  S++G+EST++
Sbjct: 128 KIAMELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVI 186

Query: 182 NVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           +        ILRPGG+ +E +K       I   +    D+   P++PGM   HYAP++ +
Sbjct: 187 DCTINPPC-ILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPL 245

Query: 237 RLRAIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAA 279
           ++    +N              +A  + G +   + I+N     ++S+   K   L   A
Sbjct: 246 KIIKGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKD--LNTIA 303

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 304 HNLFYVLRSFDEKNVDLILSEAFEEKDIGVAIMNRLKKSAG 344


>gi|73668440|ref|YP_304455.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro]
 gi|72395602|gb|AAZ69875.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro]
          Length = 367

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 165/347 (47%), Gaps = 43/347 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L +A   +  G  +A PTETVYGL  D  NP A+ +++E KKRP  NPL   V     
Sbjct: 23  SVLERASAIIKRGGTVAFPTETVYGLGADGLNPEAVMKIFEAKKRPPGNPLSLLVHSRED 82

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTK-K 126
           V+K A   P S   L   FWPGPLT++L+     DI P +++  LK+   R+P       
Sbjct: 83  VEKVARNIPESAFRLMNAFWPGPLTIILE---KNDIVPDITSGRLKSIGVRMPDHRVPLD 139

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G PLA PSAN SG+ S +   H++ S +   I  I+DGG + IGLEST++++  E
Sbjct: 140 LIKRAGTPLAAPSANLSGKPSPSLAAHVI-SDLTGRIDAILDGGEAAIGLESTVIDMTVE 198

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL-R 239
             V +LRPG +  E L+  I  V   Y   E       + +  G    HY P ++V L  
Sbjct: 199 PPV-VLRPGAVSFEELESIIGKVRPGYKNGENGDKSDLSEKKAGQKYGHYIPDTKVVLVE 257

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKT----------------------GKLKE 277
               +    L++   +     E A + L LS+                       G  +E
Sbjct: 258 GEGKSVSGQLVKL--LESYRSEGAKVGLLLSEETSKETAPLLALKNLSPDECLLLGPREE 315

Query: 278 ---AAFNLFNYMKIADDSGASSI-AFSSIPNHGLGIAINNRLERAAA 320
              AA  LF  +++ D  G   I A  S  + GLG A+ NRL  A++
Sbjct: 316 PDVAARKLFEGLRMLDKKGLDVIVADGSFSHSGLGEALINRLREASS 362


>gi|323337544|gb|EGA78789.1| Sua5p [Saccharomyces cerevisiae Vin13]
          Length = 426

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 181/381 (47%), Gaps = 67/381 (17%)

Query: 5   SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   + D    +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 42  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101

Query: 61  ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105
           I HVS I  + +      H S   L  ++  ++       WPGPLT++L + S+  + + 
Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEXIVKLGGEAWSLCKVENKKTVEKG 279

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265
              ++PGM   HY+P ++V L   H         V+  E L R     +K   NI+   I
Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339

Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299
             SL L                SKT  +       +E   NLF  ++  D++    + F 
Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             I   G G+A+ NRL +AAA
Sbjct: 400 EGINEEGEGLAVMNRLRKAAA 420


>gi|167568960|ref|ZP_02361834.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           C6786]
          Length = 341

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 159/337 (47%), Gaps = 46/337 (13%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   LDAG  +A PTETVYGL  D+++P A+ R+Y  K RPA +P+I H++  S     
Sbjct: 15  EAAALLDAGELVAFPTETVYGLGGDAQSPAAVARIYAAKGRPANHPVIVHLAPGS--DPG 72

Query: 74  ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             VD L     KL   FWPGPLTL+L       I    +   ++   R P     + L+ 
Sbjct: 73  YWVDELPADAKKLIDAFWPGPLTLILK--RAAHIPDAVSGGQESVGLRCPSHPVAQALLR 130

Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTI 180
            +     GH  +A PSANR G +S T  +H+      S+      ++DGG S +G+ESTI
Sbjct: 131 AFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEFGDSVH-----VLDGGASDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +  + +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 186 LDL-SRGFPALLRPGRVTPQQIADVLGVAPRLPDGGDATA-PRASGTLKAHYAPRTPLAL 243

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLF 283
                 P E L R  +      E   +    S+ G                    A  L+
Sbjct: 244 -----APFERLERLLSAARDAGERIALVARASRAGAWAHTDGVHFVAAPEDPLVYARELY 298

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 299 GLLRALDRAQVARILVEKLPDTAEWIAVNDRLGRAAA 335


>gi|151943645|gb|EDN61955.1| suppressor of upstream aug [Saccharomyces cerevisiae YJM789]
 gi|190407112|gb|EDV10379.1| protein SUA5 [Saccharomyces cerevisiae RM11-1a]
 gi|256272245|gb|EEU07236.1| Sua5p [Saccharomyces cerevisiae JAY291]
          Length = 426

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 181/381 (47%), Gaps = 67/381 (17%)

Query: 5   SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   + D    +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 42  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101

Query: 61  ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105
           I HVS I  + +      H S   L  ++  ++       WPGPLT++L + S+  + + 
Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265
              ++PGM   HY+P ++V L   H         V+  E L R     +K   NI+   I
Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339

Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299
             SL L                SKT  +       +E   NLF  ++  D++    + F 
Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             I   G G+A+ NRL +AAA
Sbjct: 400 EGINEEGEGLAVMNRLRKAAA 420


>gi|313893573|ref|ZP_07827142.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441844|gb|EFR60267.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 343

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 163/320 (50%), Gaps = 33/320 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83
           ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI HV +   +K   + V   +  L
Sbjct: 27  VSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLILHVPNSESIKPLVTEVSSTAQAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141
              FWPGPLT+    L  +D+ P  +T  L     R P     + L++  G P+A PSAN
Sbjct: 87  MDSFWPGPLTIT---LPKSDLVPDRATGGLPRVALRCPDHDGCRVLLQRAGVPIAAPSAN 143

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG+ S T  + +  + +   I  I+D G   IG+EST+V V  + KV ILRPGG+    
Sbjct: 144 ISGRPSPTTAQDVY-NDMNGRISYILDAGPCTIGVESTVVEVH-DDKVIILRPGGITKAQ 201

Query: 202 LKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258
           L+  +S  +EY    V   + P++PGM  +HYAP + +    + V   E++    N   K
Sbjct: 202 LETVVST-VEYDTALVGAETKPKAPGMKYTHYAPDAPM---TVVVGTPESVANTFNELSK 257

Query: 259 NIENAIISLNLSKTGKL--KEAAF--NLFNY----MKIADDSGASSIAFS---------- 300
            IE  I  L   +T +L   ++ F  + F +    + +  D   S + F+          
Sbjct: 258 GIEGPIGCLVSHETYELIKDDSRFMCHCFGHHGDALALGHDFYKSLLHFNENHVTLILAE 317

Query: 301 SIPNHGLGIAINNRLERAAA 320
            + + G G+AI NR+E+A+ 
Sbjct: 318 GVNDDGFGVAIMNRMEKASG 337


>gi|253995512|ref|YP_003047576.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8]
 gi|253982191|gb|ACT47049.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8]
          Length = 323

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 163/331 (49%), Gaps = 35/331 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +A   L  G  +AIPTETVYGLA D+ N +A+++++ IK+RPA +PLI H+  +S V
Sbjct: 4   SLEQAIAELKNGGVVAIPTETVYGLAADATNDSALKQIFAIKQRPADHPLIVHIGAMSQV 63

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +  A+V P ++  LA  FWPGPLTLVL   +   +  +   +  T   RVP       L+
Sbjct: 64  QDWATVFPEVARDLASAFWPGPLTLVLP--AQPHVSRVVRGDEPTVALRVPNHPVALALL 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
              G  +A PSAN   Q+S T   H+   L +SI      ++DGG  ++G+ESTIV+V  
Sbjct: 122 TQGGLSVAAPSANLFTQLSPTTAAHVEAGLGASIS-----VLDGGACQVGIESTIVSVTA 176

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQVRL-- 238
           + + ++LRPG +  + +    +             +   P+ PG    HY+PR+ + L  
Sbjct: 177 DGQWQLLRPGMISEQAIADVAARAASQPTQAVESVDAPVPKVPGQHALHYSPRTPLLLFK 236

Query: 239 -RAIHVNPRE---------ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
            RA  +   E         A +  G+  + +     +  +  K  +L   A +  + MK+
Sbjct: 237 DRAALLQECELLKQAALSSAAMLIGDGTVPSCPYVQLPNSPEKVAELLYGALHHLDAMKV 296

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                   +     PN  + +A+ +RL RA 
Sbjct: 297 ------DRLLVELPPNLPIWMAVLDRLSRAG 321


>gi|289450238|ref|YP_003475652.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184785|gb|ADC91210.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 403

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 130/237 (54%), Gaps = 31/237 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVDPLS 80
           + +PTETVYGL V++    A+  +Y +K RP+ NPLI HV+D      +V+K   + PL+
Sbjct: 28  VVMPTETVYGLGVNALMGDAVPEVYRVKGRPSDNPLIVHVADFVDIPPLVQK---ISPLA 84

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
             +   F PGPLT++   L  +D+ PL  +  L T   R+P       LI+  G P+A P
Sbjct: 85  DFIMHRFMPGPLTVI---LPKSDLIPLQVSGGLATVGIRMPSHPIAHALIKLAGVPVAAP 141

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ S+TN    L   +  ++P I+DGG S +GLEST++++  +   RILRPG ++
Sbjct: 142 SANLSGKPSLTNGPDCL-EELSGKVPFIVDGGASDVGLESTVLDLTSDMP-RILRPGKID 199

Query: 199 ---------------IETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRL 238
                          ++  + A  V L Y   +     P +PGM   HYAP+++VR+
Sbjct: 200 QAAVQAVCDEFKGKVMDGGQSAPMVSLGYLRRLAANEKPAAPGMKYRHYAPQAEVRI 256


>gi|219847348|ref|YP_002461781.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM
           9485]
 gi|219541607|gb|ACL23345.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM
           9485]
          Length = 345

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/242 (36%), Positives = 128/242 (52%), Gaps = 19/242 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T   A+  A E L  G  +A PTETVYGL   + + TA+  ++  K RP  +PLI H++ 
Sbjct: 8   TSPQAIAVAAELLRRGELVAFPTETVYGLGGHALDQTAVAAIFAAKGRPTSDPLIVHLAT 67

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPC 121
            + + + A  + PL+  LA  FWPGPLTL++        HP      TA  +T   RVP 
Sbjct: 68  AADLPRVAVDIPPLATELATHFWPGPLTLIVPR------HPHVPRAVTAGRETVAVRVPS 121

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L+   G P+A PSANR G  S T   H+L + +   I  IIDGG + IG+EST+
Sbjct: 122 HPVAHALLVAAGVPVAAPSANRFGHTSPTTADHVL-ADLDGRIAAIIDGGPTPIGIESTV 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ----SPGMLKSHYAPRSQV 236
           ++        +LRPGG+ +E L  A++  ++     T+  +    SPG+L  HYAP  ++
Sbjct: 181 LDCTTNPPT-LLRPGGISLEALT-AVAGPIQTYHRTTNKSETGFVSPGLLDRHYAPDHEL 238

Query: 237 RL 238
            L
Sbjct: 239 WL 240


>gi|71906092|ref|YP_283679.1| translation factor SUA5 [Dechloromonas aromatica RCB]
 gi|71845713|gb|AAZ45209.1| translation factor SUA5 [Dechloromonas aromatica RCB]
          Length = 331

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 170/348 (48%), Gaps = 43/348 (12%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS T+++  ++A E L AG  +A+PTETVYGL  D+ NP A+ +++  K RPA +PLI H
Sbjct: 1   MSPTEAD-YQRAVELLRAGELVAMPTETVYGLGADAANPAAVAKIFAAKGRPADHPLIVH 59

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +S    V + A   P ++  L + FWPGPLT++L       +    T    T   RVP  
Sbjct: 60  LSGHDAVDRWAEQVPAVAWELMEAFWPGPLTVILK--KQAWVPDAVTGGQDTVGLRVPGH 117

Query: 123 ---------FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
                    F     E  G  +A PSANR G+IS T   H+ +  +   + +I+DGG   
Sbjct: 118 PVALELLRRFAAATGEHAG--IAAPSANRFGRISPTTAAHV-AEELGDAVSMILDGGPCA 174

Query: 174 IGLESTIVNVQCEKKVRILRPGG---LEIET-LKRAISVELEYCVDETSTPQSPGMLKSH 229
           +G+ESTIV+    + V +LRPG    L +E  L R  ++E          P+  G L++H
Sbjct: 175 VGIESTIVDCSRGEPV-VLRPGHISPLHLEAILGRRPAIET-----AVGAPRVSGSLEAH 228

Query: 230 YAPRSQVRLRAIHVNPREALIRFGNVP-IKNIENAIISLNLSKTGKLKEA---------- 278
           YAP + +R+ A      E L+ F N    +  + A+IS N      +  A          
Sbjct: 229 YAPVTPLRMVA-----GERLLDFINAQRHRGGKCAVISANQPPQAGMPHAWRLMPADPVG 283

Query: 279 -AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            A +++  ++  D +G   I   +IP      A+ +RL RA A   Q+
Sbjct: 284 YAHDIYAALRDMDHAGVDLIVVEAIPEDSAWAAVADRLRRAVAGAGQA 331


>gi|114332280|ref|YP_748502.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91]
 gi|114309294|gb|ABI60537.1| translation factor SUA5 [Nitrosomonas eutropha C91]
          Length = 341

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 11/222 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  IA PTETVYGL  D  +P AI+++++IK RP  +PLI H +  + ++  A
Sbjct: 22  AVASLRKGNVIAFPTETVYGLGADISHPQAIQKIFDIKGRPPDHPLIVHFAKSAELEFWA 81

Query: 75  SVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETY 131
              P + L LAK FWPGPLTLV   L  +   PLS T    T   RVP      +L+E  
Sbjct: 82  ENIPTTALMLAKHFWPGPLTLV---LPKSRHIPLSVTGGQDTVGLRVPSHPVALRLLEEL 138

Query: 132 G--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           G    +A PSANR G +S T+  H+        I +I+DGG  ++GLESTIV+   + +V
Sbjct: 139 GGYKAIAAPSANRFGFVSPTSADHV-KKEFGDRIDIILDGGSCEVGLESTIVSC-IDNEV 196

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYA 231
            ILRPGG+ + +++  +  ++ +     ++ ++PG L SHYA
Sbjct: 197 AILRPGGISVLSIENVLKQKI-FVRSHGNSIRAPGSLTSHYA 237


>gi|259146341|emb|CAY79598.1| Sua5p [Saccharomyces cerevisiae EC1118]
 gi|323348688|gb|EGA82930.1| Sua5p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355058|gb|EGA86888.1| Sua5p [Saccharomyces cerevisiae VL3]
          Length = 417

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 181/381 (47%), Gaps = 67/381 (17%)

Query: 5   SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   + D    +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 33  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92

Query: 61  ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105
           I HVS I  + +      H S   L  ++  ++       WPGPLT++L + S+  + + 
Sbjct: 93  ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265
              ++PGM   HY+P ++V L   H         V+  E L R     +K   NI+   I
Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 330

Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299
             SL L                SKT  +       +E   NLF  ++  D++    + F 
Sbjct: 331 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 390

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             I   G G+A+ NRL +AAA
Sbjct: 391 EGINEEGEGLAVMNRLRKAAA 411


>gi|160903205|ref|YP_001568786.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95]
 gi|160360849|gb|ABX32463.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95]
          Length = 344

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 161/334 (48%), Gaps = 29/334 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   +++A + +     +  PTETVYGL  +  +  A+R+++E K RP  NPLI HVS++
Sbjct: 14  EEEKIKEAAQAIKEDKTVVFPTETVYGLGANGLSENAVRKIFEAKGRPYDNPLILHVSNV 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTK 125
               ++  +    L   +   PGP+T V   L   ++ P + TA   T   R+P      
Sbjct: 74  RSFLEYTYISYALLEKIERLLPGPITFV---LKKREVVPDIVTAGKDTLAIRMPAHPVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLIE    P+A PSAN SG+ S T  +H+L   + K +  II GG  + G+ESTI+++  
Sbjct: 131 KLIEYAEVPIAAPSANISGKPSPTMSEHVLKDMLGK-VDYIIIGGKVEFGVESTIIDLTQ 189

Query: 186 EKKVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
            K   ILRPG +  E LK      I  +  Y   E    +SPGM   HYAP + V L  +
Sbjct: 190 GKIPIILRPGPIPPEKLKEIFGDIIIPDFVYGKIEPDYIKSPGMKYRHYAPNTPVIL--V 247

Query: 242 HVNPREALIRFGNVPIKNIENAII-------------SLNLSKTG---KLKEAAFNLFNY 285
             +    +++     +K+  N ++             ++N    G      E A  LF  
Sbjct: 248 EHDDANTMVKKVLEEVKSYNNPLVLCLKEHVGYYKDHNINFDTIGSESNYYEFAVKLFEM 307

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++  D+    ++    I + G+GIA+ NRL +AA
Sbjct: 308 LRKYDEK-VDAMIIEGIEDKGIGIAVMNRLRKAA 340


>gi|53718441|ref|YP_107427.1| hypothetical protein BPSL0802 [Burkholderia pseudomallei K96243]
 gi|53725053|ref|YP_102128.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344]
 gi|67641175|ref|ZP_00439959.1| Sua5/YciO/YrdC family protein [Burkholderia mallei GB8 horse 4]
 gi|121601543|ref|YP_991945.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1]
 gi|124384353|ref|YP_001028391.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229]
 gi|126449438|ref|YP_001079624.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247]
 gi|126453889|ref|YP_001065126.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106a]
 gi|167002687|ref|ZP_02268477.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20]
 gi|217419510|ref|ZP_03451016.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576]
 gi|237811040|ref|YP_002895491.1| Sua5/YciO/YrdC family protein [Burkholderia pseudomallei MSHR346]
 gi|242314543|ref|ZP_04813559.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106b]
 gi|254176690|ref|ZP_04883347.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399]
 gi|254181609|ref|ZP_04888206.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655]
 gi|254196617|ref|ZP_04903041.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13]
 gi|254203808|ref|ZP_04910168.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH]
 gi|254208786|ref|ZP_04915134.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU]
 gi|254360161|ref|ZP_04976431.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280]
 gi|52208855|emb|CAH34794.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52428476|gb|AAU49069.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344]
 gi|121230353|gb|ABM52871.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1]
 gi|124292373|gb|ABN01642.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229]
 gi|126227531|gb|ABN91071.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106a]
 gi|126242308|gb|ABO05401.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247]
 gi|147745320|gb|EDK52400.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH]
 gi|147750662|gb|EDK57731.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU]
 gi|148029401|gb|EDK87306.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280]
 gi|160697731|gb|EDP87701.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399]
 gi|169653360|gb|EDS86053.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13]
 gi|184212147|gb|EDU09190.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655]
 gi|217396814|gb|EEC36830.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576]
 gi|237504349|gb|ACQ96667.1| Sua5/YciO/YrdC family protein [Burkholderia pseudomallei MSHR346]
 gi|238522048|gb|EEP85495.1| Sua5/YciO/YrdC family protein [Burkholderia mallei GB8 horse 4]
 gi|242137782|gb|EES24184.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106b]
 gi|243061678|gb|EES43864.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20]
          Length = 341

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 155/335 (46%), Gaps = 38/335 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243

Query: 239 RAIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------NL 282
            A   + P  A  R    P+  +  A      S+ G    AA                 L
Sbjct: 244 AAFERLEPLLAAARDTGEPVALVARA------SRAGAWAHAAGVHFVAAPEDPAAYAREL 297

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
           +  ++  D +  + I    +P+     A+N+RL R
Sbjct: 298 YGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGR 332


>gi|42521964|ref|NP_967344.1| putative translation factor related to Sua5 [Bdellovibrio
           bacteriovorus HD100]
 gi|39574494|emb|CAE77998.1| putative translation factor related to Sua5 [Bdellovibrio
           bacteriovorus HD100]
          Length = 338

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 156/293 (53%), Gaps = 14/293 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ + AL KA   L+ G  I  PTETVYGLA     P+AI +++  K+RP  +PLI HV+
Sbjct: 2   MSPNEALAKAKIILEEGGVIGFPTETVYGLAARIDIPSAIEKIFTTKERPFFDPLIVHVA 61

Query: 66  DISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            I   KK  A   P S  LA+ FWPGPLT+VL       ++ + T+ L++   R+P    
Sbjct: 62  SIEQAKKVTAFWGPASQALAEAFWPGPLTMVLP--RDPSVNAMITSGLESVGIRMPNHPL 119

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L++  G PLA PSAN+ G+ S T+  H+       E   ++DGG  +IG+EST++ V
Sbjct: 120 ALELLQQVGVPLAAPSANKFGRTSPTSASHV-RVEFKNENVFVVDGGDCEIGIESTVLLV 178

Query: 184 QCEKK---VRILRPGGLEIETLKRAISVE-LEY-CVDETSTPQSPGMLKSHYAPRSQVRL 238
           +   +   + ILR G +    L R +  + L Y  +++    +SPG +K HY P   + +
Sbjct: 179 RHRPEGVMLSILRRGHILKSDLARVLEEKGLAYEFIEQVDKRESPGHMKHHYMPPVPLVV 238

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                   E++++  N  I  + + I S+ + K     +A  + +  +K+++D
Sbjct: 239 CLDPSRSPESVLKEVNEKIGELPDEIESIKIIKP----KAGIHSYEVLKLSED 287


>gi|76808623|ref|YP_332415.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710b]
 gi|126440362|ref|YP_001057891.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668]
 gi|226199432|ref|ZP_03794990.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254187567|ref|ZP_04894079.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254261671|ref|ZP_04952725.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710a]
 gi|76578076|gb|ABA47551.1| Sua5/YciO/YrdC/YwlC family protein, putative [Burkholderia
           pseudomallei 1710b]
 gi|126219855|gb|ABN83361.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668]
 gi|157935247|gb|EDO90917.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225928508|gb|EEH24537.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254220360|gb|EET09744.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710a]
          Length = 342

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 155/335 (46%), Gaps = 38/335 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 11  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 71  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 128

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 186

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 187 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 244

Query: 239 RAIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------NL 282
            A   + P  A  R    P+  +  A      S+ G    AA                 L
Sbjct: 245 AAFERLEPLLAAARDTGEPVALVARA------SRAGAWAHAAGVHFVAAPEDPAAYAREL 298

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
           +  ++  D +  + I    +P+     A+N+RL R
Sbjct: 299 YGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGR 333


>gi|91785085|ref|YP_560291.1| translation factor SUA5 [Burkholderia xenovorans LB400]
 gi|91689039|gb|ABE32239.1| translation factor SUA5 [Burkholderia xenovorans LB400]
          Length = 346

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 160/346 (46%), Gaps = 61/346 (17%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68
           +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   D +
Sbjct: 19  IEHAAALLDAGELVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQGDPN 78

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
              +H   D  +  L   FWPGPLTL+L       I    +    +   R P     + L
Sbjct: 79  YWVEHLPAD--AQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQAL 134

Query: 128 IETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           +E +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI+
Sbjct: 135 LEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTIHVLDGGASDVGIESTIL 192

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRS----- 234
           ++       +LRPG +  + +   +  E     D  + + P++ G LK+HYAP +     
Sbjct: 193 DL-SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPSTPLALL 250

Query: 235 -----QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA----------- 278
                +  L A HV+ R AL+                  +S+ G   +A           
Sbjct: 251 PFGALETLLAARHVDERVALV----------------ARVSRAGHWADAEGVHFVAAPED 294

Query: 279 ----AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
               A  L+  ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 295 PHVYARELYGLLRALDRANVTRILIEKLPDTIEWIAVNDRLGRAAA 340


>gi|148378148|ref|YP_001252689.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934330|ref|YP_001382549.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936453|ref|YP_001386101.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           Hall]
 gi|148287632|emb|CAL81697.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152930374|gb|ABS35874.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932367|gb|ABS37866.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           Hall]
          Length = 351

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 171/338 (50%), Gaps = 32/338 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A + L  G  +  PTETVYGL  ++ +  A++ +++ K RP  NPLI H+S +
Sbjct: 14  DEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFQAKGRPQDNPLIVHISKM 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FT 124
             ++K     P ++  L   FWPGP+T++   L   DI P  T A L +   R+P     
Sbjct: 74  KDIEKLVQKIPSVAEKLMDKFWPGPMTII---LKKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E +K       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 INPPC-ILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPR------------EALIRFGNVPI-KNIEN----AIISLNLSKTGKLKEAAFNL 282
              +N              +A  + G +   + I+N     ++S+   K   L   A NL
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYRKGDVVSIGSRKD--LNTIAHNL 306

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D+     I   +     +G+AI NRL+++A 
Sbjct: 307 FYVLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAG 344


>gi|207345471|gb|EDZ72286.1| YGL169Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 426

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 181/381 (47%), Gaps = 67/381 (17%)

Query: 5   SITDSN---ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   + D    +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 42  TITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101

Query: 61  ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105
           I HVS I  + +      H S   L  ++  ++       WPGPLT++L + S+  + + 
Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265
              ++PGM   HY+P ++V L   H         V+  E L R     +K   NI+   I
Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339

Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299
             SL L                SKT  +       +E   NLF  ++  D++    + F 
Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             I   G G+A+ NRL +AAA
Sbjct: 400 EGINEEGEGLAVMNRLRKAAA 420


>gi|332531641|ref|ZP_08407538.1| Sua5/YciO/YrdC/YwlC family protein [Hylemonella gracilis ATCC
           19624]
 gi|332039004|gb|EGI75433.1| Sua5/YciO/YrdC/YwlC family protein [Hylemonella gracilis ATCC
           19624]
          Length = 351

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 172/367 (46%), Gaps = 66/367 (17%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   D +A+++A + L AG  + +PTETVYGLA D+ +  A+ ++Y  K RPA +PLI 
Sbjct: 2   ILDGRDPSAVQRAAQALRAGELLGLPTETVYGLAADAGSDEAVAKIYAAKGRPAGHPLIV 61

Query: 63  HVSDISMVKKH-----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-------------- 103
           H++D S  ++      A V   +  L + FWPGPLTL+L   +                 
Sbjct: 62  HLADESGAREGLAHFAAEVPAFARALMEAFWPGPLTLILPRRAGVAAAAAGGQHSIGLRC 121

Query: 104 -IHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
             HP++ A L+ A          + +   G  LA PSAN  G++S T   H+ +     E
Sbjct: 122 PAHPVAQAVLQAA----------RSLGVLG--LAAPSANLFGRVSPTTAAHVQAE--LGE 167

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRI-LRPGGL---EIETLKRAISVELEY-CVDET 217
             LI+DGG  ++G+ESTIV+  C +   + LRPG +    I+ +  A   ++     DE 
Sbjct: 168 GLLILDGGPCEVGIESTIVD--CTRGAPVLLRPGQITRVRIDEVLLAAGTDMRLRSADEV 225

Query: 218 ------STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI------- 264
                 + P++ GML+SHYAPR++VRL            R  +     + + +       
Sbjct: 226 QARTAQAAPRASGMLESHYAPRAKVRLLDAVALQSALAARHSDAGAARLADEVQAPPVAV 285

Query: 265 ---ISLNLSKTGKLKE--------AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
               SL L   G +          AA  LF  ++  D++G   I   + P+      + +
Sbjct: 286 YARTSLQL-PAGVVHRPMPVEAAVAAHELFAALRALDEAGVREIWVETPPDAPAWEGVMD 344

Query: 314 RLERAAA 320
           RL RAAA
Sbjct: 345 RLSRAAA 351


>gi|300705060|ref|YP_003746663.1| hypothetical protein RCFBP_20897 [Ralstonia solanacearum CFBP2957]
 gi|299072724|emb|CBJ44077.1| conserved protein of unknown function, translation factor domain,
           SUA5 type [Ralstonia solanacearum CFBP2957]
          Length = 336

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 162/325 (49%), Gaps = 26/325 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A   P ++L L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 76  YWADDLPGIALQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 133

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       E   +++G    +G+ESTIV++ + 
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVREE--FGEAVFVLEGDGVDVGIESTIVDLSRL 191

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           ++ +   +LRPG +  E ++R   V     + + + P++ G L++HYAPR+ + L A   
Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVM--PSLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249

Query: 244 NPREALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFN-------LFNYMKIADDSGAS 295
            P     R   +P  + I      ++L      + A          L+  ++  D  G  
Sbjct: 250 VP----TRLAALPAGQRIVWVGAPVDLPSGCDQRAAPVTPAAYANALYALLRELDHGGYH 305

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
           +I   ++P+     A+N+RL RAAA
Sbjct: 306 AIWVQTLPDTSAWAAVNDRLRRAAA 330


>gi|315050250|ref|XP_003174499.1| SUA5 protein [Arthroderma gypseum CBS 118893]
 gi|311339814|gb|EFQ99016.1| SUA5 protein [Arthroderma gypseum CBS 118893]
          Length = 441

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 135/254 (53%), Gaps = 28/254 (11%)

Query: 10  NALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A E + A  +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALIEAAEAIRASDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106

Query: 69  MVKKHASVDPLSLH-----------------LAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
            +++   VDP   +                 L + FWPGPL+++L       + P  TAN
Sbjct: 107 QLERLL-VDPKQSNGAIQSITTSPIPKIYEPLMERFWPGPLSIILPNPPHLPLAPEVTAN 165

Query: 112 LKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           L T   R+P     + LI     P+A PSAN S + S T  +H+  + +   I +I+DGG
Sbjct: 166 LPTFAARMPSSPLARLLIALSDKPVAAPSANASTKPSPTTAQHVF-TDLQGRIDMILDGG 224

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETSTPQSPG 224
              +G+EST+V+        ILRPGG+ I+ L+       V++ Y    +   + P++PG
Sbjct: 225 PCGVGIESTVVD-GLSSPPAILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPG 283

Query: 225 MLKSHYAPRSQVRL 238
           M   HY+P+++V L
Sbjct: 284 MKYKHYSPKARVIL 297


>gi|225563151|gb|EEH11430.1| translation initiation protein Sua5 [Ajellomyces capsulatus G186AR]
          Length = 490

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 134/260 (51%), Gaps = 35/260 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A E   + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS    ++
Sbjct: 62  LEAAEELRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSSREQLQ 121

Query: 72  K----HAS----------------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
           +    H+S                      + P+   L   FWPGPLT++L   + + + 
Sbjct: 122 RLLQPHSSSPSQGGYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNPTPSPLA 181

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
           P  T+ L+T   R+P     + LI     PLA PSAN S + S T  +H+  + +   I 
Sbjct: 182 PEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADLQGRIN 240

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETS 218
           +I+DGG   +G+EST+V+        +LRPGG+ IE ++       V++ Y    +    
Sbjct: 241 MILDGGPCGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEDVQIGYEDGALQGKE 299

Query: 219 TPQSPGMLKSHYAPRSQVRL 238
            P++PGM   HY+P+++V L
Sbjct: 300 VPRAPGMKYKHYSPKAKVVL 319


>gi|170693448|ref|ZP_02884607.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M]
 gi|170141603|gb|EDT09772.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M]
          Length = 359

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 161/339 (47%), Gaps = 47/339 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DIS 68
           +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   D +
Sbjct: 31  IEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQGDPN 90

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
              +H   +  +  L   FWPGPLTL+L       I    +    +   R P     + L
Sbjct: 91  YWVEHLPQE--AQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQAL 146

Query: 128 IETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLES 178
           +E +     GH  +A PSANR G +S T  +H+     S+I      ++DGG S +G+ES
Sbjct: 147 LEAFSSLRAGHGGVAAPSANRFGHVSPTTAQHVRDEFGSAIH-----VLDGGASDVGIES 201

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQV 236
           TIV++       +LRPG +  + +   +  E     D  + + P++ G LK+HYAPR+ +
Sbjct: 202 TIVDL-SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPRTPL 259

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFN 281
            L  +  N  E L+          E   +    S+ G   +A               A  
Sbjct: 260 AL--LPFNALEPLL----AARAAGERVALVARASRAGHWADAEGVHFIAAPEDPHVYARE 313

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L+  ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 314 LYGLLRALDRANVARILIEKLPDTIEWIAVNDRLGRAAA 352


>gi|320040093|gb|EFW22027.1| translation initiation protein Sua5 [Coccidioides posadasii str.
           Silveira]
          Length = 461

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 26/239 (10%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK----------- 72
           P+A PTETVYGL  D+    A++ +Y  K+RP+ NPLI HVS    +++           
Sbjct: 69  PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTSN 128

Query: 73  ------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
                  + + P+   L + FWPGPLT+++     + + P  T+NL T   R+P     +
Sbjct: 129 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 188

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    PLA PSAN S + S T  +H+  + +   I +I+DGG   +G+EST+V+   
Sbjct: 189 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGSCGVGVESTVVD-GL 246

Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
                ILRPGG+ IE ++     E       +  +    TP++PGM   HY+PR++V L
Sbjct: 247 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVL 305


>gi|290559728|gb|EFD93053.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 358

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 162/355 (45%), Gaps = 58/355 (16%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +IM ++  N     ++ A   +  G  +  PTETVYG+  D+ N  A R ++ +K R A 
Sbjct: 11  EIMKMSKKNVDLEKIKLAAREIRGGKLVVFPTETVYGIGADAFNTKACRDIFRVKNRAAD 70

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           NPLI H+SD   +     VD       +  WP P+T +L      D+    TA + T   
Sbjct: 71  NPLIVHISDFEQLDAITYVDGELREKIRRLWPNPITFILKRKKIPDV---VTAGMDTVAV 127

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       LI     P+A PSAN S   S T  KH +     K + +IIDGG SK G+
Sbjct: 128 RMPNNRIALSLIRESHTPIAAPSANISTFPSATEAKHAIEDFNGK-VSVIIDGGRSKFGI 186

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYA 231
           EST+++V   K  R+LRPG  EI   ++      I  E+   V++     SPGM   HY+
Sbjct: 187 ESTVIDV-SRKPYRLLRPGAFEIGDAEKVLGDIIIPKEVNKTVNKAKV-LSPGMKYRHYS 244

Query: 232 PRSQVRL------------RAIHVNPREALI----------RFGNVPIKNIENAI-ISLN 268
           PR  + L              +H N + A+I          +   + + +IEN I IS N
Sbjct: 245 PRKPLFLFENFRDMKAASDYLLHKNLKFAVISPEDYAHFFYKTRIITLGSIENPISISKN 304

Query: 269 LSKTGK---LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L ++ +   ++E  F L + M++                    +A+ NRLE+AA 
Sbjct: 305 LFRSFRRLDIEEVDFGLISKMRL----------------KKFDLAVRNRLEKAAG 343


>gi|303312189|ref|XP_003066106.1| SUA5 protein, putative [Coccidioides posadasii C735 delta SOWgp]
 gi|240105768|gb|EER23961.1| SUA5 protein, putative [Coccidioides posadasii C735 delta SOWgp]
          Length = 461

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 26/239 (10%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK----------- 72
           P+A PTETVYGL  D+    A++ +Y  K+RP+ NPLI HVS    +++           
Sbjct: 69  PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTSN 128

Query: 73  ------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
                  + + P+   L + FWPGPLT+++     + + P  T+NL T   R+P     +
Sbjct: 129 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 188

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    PLA PSAN S + S T  +H+  + +   I +I+DGG   +G+EST+V+   
Sbjct: 189 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGSCGVGVESTVVD-GL 246

Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
                ILRPGG+ IE ++     E       +  +    TP++PGM   HY+PR++V L
Sbjct: 247 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVL 305


>gi|258574551|ref|XP_002541457.1| hypothetical protein UREG_00973 [Uncinocarpus reesii 1704]
 gi|237901723|gb|EEP76124.1| hypothetical protein UREG_00973 [Uncinocarpus reesii 1704]
          Length = 458

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 26/240 (10%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-----------------S 65
           +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HV                 S
Sbjct: 68  VPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVHSREQLEGLLQPPKCPKS 127

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
             +  +  + + P+   L + FWPGPLT+++     + + P  T+NL T   R+P     
Sbjct: 128 QQTTAQSSSLIPPIYEPLIQRFWPGPLTILIPNPPHSPLAPEVTSNLSTFGVRMPSSSLA 187

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI     PLA PSAN S + S T  +H+  + +   I +I+DGG   +G+EST+V+  
Sbjct: 188 RLLIRLADRPLAAPSANASTKPSPTTAQHVY-TDLRGRIDIILDGGPCGVGVESTVVDGL 246

Query: 185 CEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
            +    ILRPGG+ IE ++     E       +  +   + P++PGM   HY+P+++V L
Sbjct: 247 SQPPA-ILRPGGVGIEEIRSCRGWEDVRIGYKDGALQGRTAPRAPGMKYRHYSPKAKVVL 305


>gi|134279501|ref|ZP_01766213.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305]
 gi|134248701|gb|EBA48783.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305]
          Length = 341

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 155/335 (46%), Gaps = 38/335 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTGQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243

Query: 239 RAIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF---------------NL 282
            A   + P  A  R    P+  +  A      S+ G    AA                 L
Sbjct: 244 AAFERLEPLLAAARDTGEPVALVARA------SRAGAWAHAAGVHFVAAPEDPAAYAREL 297

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
           +  ++  D +  + I    +P+     A+N+RL R
Sbjct: 298 YGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGR 332


>gi|258539383|ref|YP_003173882.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus Lc 705]
 gi|257151059|emb|CAR90031.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus Lc 705]
          Length = 322

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 11/199 (5%)

Query: 45  IRRL---YEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST 101
           +RRL   Y  K RP+ NPLI  V+D +MV ++A++ P +  L   FWPGPLT++L++L  
Sbjct: 22  LRRLVKVYAAKGRPSDNPLIVTVADAAMVSQYATITPDAAKLMDTFWPGPLTIILNILPG 81

Query: 102 TDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160
             +    T  L+TA FR P    T+KLI T G P+  PSAN SG+ S T   H+L   + 
Sbjct: 82  R-LSMKVTGGLQTAAFRNPDDALTRKLIATAGVPIVGPSANTSGKPSPTTADHVL-HDLA 139

Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL---EIETLKRAISVELEYCVDET 217
            +I  ++D G +++G+ESTI+++       ILRPG +   E+E L   +     + V + 
Sbjct: 140 DKIAGVLDDGPTRVGVESTIIDLTVTPPA-ILRPGAIGPHELEPLLGPVD-SAAHHVGKN 197

Query: 218 STPQSPGMLKSHYAPRSQV 236
             P++PGM   HYAP +QV
Sbjct: 198 EAPKAPGMKYKHYAPAAQV 216


>gi|159111922|ref|XP_001706191.1| SUA5 protein [Giardia lamblia ATCC 50803]
 gi|157434285|gb|EDO78517.1| SUA5 protein [Giardia lamblia ATCC 50803]
          Length = 406

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 181/374 (48%), Gaps = 64/374 (17%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T S  L  A   L  G  +AIPTETVYGLA D+ +  A  +++ +K+RPA +PLI
Sbjct: 41  RILGTTQSE-LADAAGALQRGELVAIPTETVYGLAADALSEAACAKIFTLKQRPANDPLI 99

Query: 62  CHVSDISMVKKHA--SVDPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            H+S IS +   A  SV+  S+   LA  FWPGPLT+VL   +   +  + TA  +T   
Sbjct: 100 VHISHISQLPMVAVVSVELSSIVDALAAAFWPGPLTMVLP--AAPCVPSIVTAGSQTIGV 157

Query: 118 RVP-----CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           R+P     C     ++E    PLA PSAN  G IS T  + + +  +  ++ LIIDGG  
Sbjct: 158 RMPRHPVACA----ILELAARPLAAPSANMFGSISPTQAEDVAAEFVNSDL-LIIDGGRC 212

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDE----------TSTPQ 221
            IG+EST++ V+ +  + ILR G +  E L   +    L+Y   E          T    
Sbjct: 213 DIGIESTVLLVE-KDCLTILRRGQVNEEMLVATLPTNALDYIRVETRALSSSGLQTKAVS 271

Query: 222 SPGMLKSHYAPRSQVRL------------RAI------------HVNPR------EALIR 251
           SPG    HY+PR++  L            RAI              NP       +AL+R
Sbjct: 272 SPGQFLRHYSPRTECYLVMKGGPMLPGAVRAILPARLDGFVVILDCNPALAELEPDALLR 331

Query: 252 --FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI-AFSSIPNHGLG 308
              G +P +  E A I L       L+ AA +LF  ++ AD  G + I A    P  GL 
Sbjct: 332 SLAGLLP-EGTEPARI-LRAYSVPTLEAAAQSLFETLRRADKLGPACILALPPEPARGLA 389

Query: 309 IAINNRLERAAAPR 322
            A+ +RL RAA+ R
Sbjct: 390 DALLDRLFRAASGR 403


>gi|6321269|ref|NP_011346.1| Sua5p [Saccharomyces cerevisiae S288c]
 gi|417826|sp|P32579|SUA5_YEAST RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           SUA5; AltName: Full=Suppressor of upstream AUG protein
           5; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein SUA5
 gi|4566|emb|CAA45598.1| SUA5 [Saccharomyces cerevisiae]
 gi|971384|emb|CAA59760.1| G1660 [Saccharomyces cerevisiae]
 gi|1322770|emb|CAA96881.1| SUA5 [Saccharomyces cerevisiae]
 gi|285812044|tpg|DAA07944.1| TPA: Sua5p [Saccharomyces cerevisiae S288c]
          Length = 426

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 119/381 (31%), Positives = 179/381 (46%), Gaps = 67/381 (17%)

Query: 5   SITDSN---ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   + D    +A PTETVYGL   + N  ++  +Y  K RP+ NPL
Sbjct: 42  TITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSDNPL 101

Query: 61  ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105
           I HVS I  + +      H S   L  ++  ++       WPGPLT++L + S+  + + 
Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C     +LRPGG   E + +          VE +  V++ 
Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPT-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265
              ++PGM   HY+P ++V L   H         V+  E L R     +K   NI+   I
Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANSNIKKIAI 339

Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299
             SL L                SKT  +       +E   NLF  ++  D++    + F 
Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             I   G G+A+ NRL +AAA
Sbjct: 400 EGINEEGEGLAVMNRLRKAAA 420


>gi|239637409|ref|ZP_04678391.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603]
 gi|239597009|gb|EEQ79524.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603]
          Length = 347

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 15/227 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL +A+PTETVYGL  D+ N  A+  +YE K RP+ NPLI H+ D+S +     +++
Sbjct: 29  LNGGL-VALPTETVYGLGADATNQEAVSHIYEAKGRPSDNPLIVHIHDMSQMNDFVDTLE 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L S   + P  T  L +   R+P     + +++    P+A
Sbjct: 88  PKVQSLMEAFWPGPISFILPLKSGY-LCPKVTGGLNSIAVRMPSHPIGRSVLQHIDKPIA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T  +H+    +   I  II+G  S+ GLEST+++   +   RI RPG 
Sbjct: 147 APSANISGRPSPTTFEHVF-QDLNGRIDGIINGDQSEEGLESTVLDC-TQYPFRIARPGS 204

Query: 197 LEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQVRL 238
           +     K+ I   L  C++     E S P +PGM   HY+P + V +
Sbjct: 205 I----TKKMIENVLPNCIEASNYNEASQPIAPGMKYKHYSPDTPVTI 247


>gi|328851428|gb|EGG00583.1| hypothetical protein MELLADRAFT_111724 [Melampsora larici-populina
           98AG31]
          Length = 484

 Score =  127 bits (318), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 174/389 (44%), Gaps = 75/389 (19%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++  +++AL+ A   +     +A PTETVYGL   + +  A+ ++Y  K RPA NPLI H
Sbjct: 84  ITFANASALQTASILIQNNELVAFPTETVYGLGACATSNIAVSKIYRTKGRPADNPLIVH 143

Query: 64  VSDISMVKKHASVD---PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLS------TANLK 113
           VS + M++     D   PLS   L   FWPGPLT ++  +S+    P+S      T  LK
Sbjct: 144 VSSLHMLQSLLPSDWVLPLSYQILIDEFWPGPLTFLVPTISSE--QPISKIPDKVTCGLK 201

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P     + LI   G P+A PSAN SG+ S T  +H+    +   I L++DGG  
Sbjct: 202 TVAVRIPSHPIARALISLSGVPIAAPSANLSGRPSPTEAEHV-RKDLEPSIKLVLDGGPC 260

Query: 173 KIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAI----------SVELEYCVDETST-- 219
            +G+EST+++ +  +  +R+LR GGL  E + + +           V +    +   T  
Sbjct: 261 NVGVESTVIDGLNPDGGIRVLRLGGLSAEDITQCLVNAKTSGKLAEVPIIEVPNSNGTSL 320

Query: 220 -----PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI---------- 264
                P +PGM   HY+P ++V L  +   P     +    PI  I+N            
Sbjct: 321 APGIQPTTPGMKYKHYSPNAKVTLINLIRPPIPQNWQSFPTPIDLIDNFTTNFRRENIVC 380

Query: 265 ----ISLNLSKTGKLKEA-----------------------------AFNLFNYMKIADD 291
               I L L + G+L +A                             A  LF+ M+  D+
Sbjct: 381 RPVSIGLMLIENGELLKAFKSYEEELDCDEVELIHYALGPINQPEISAQRLFSSMRSLDE 440

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                I    +P +GLG  +  RL +AA 
Sbjct: 441 CLVDIIFVEQVPLNGLGSTVMERLYKAAG 469


>gi|319942512|ref|ZP_08016822.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319803915|gb|EFW00833.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 348

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 19/242 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A   L+AG  +A+PTETVYGLA D+    A+   Y  K RP  +PLI HV+  
Sbjct: 16  DMAAIARAATILEAGGLVAMPTETVYGLAADADQEAAVTATYRAKGRPLNHPLIVHVASA 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +   A + P +  LA  +WPGPLT+VL            T    T   R P   +   
Sbjct: 76  DDIPWWAEITPEAQKLADRYWPGPLTMVLK--KKPRCGGWVTGGQDTVALRCPSHPWAHA 133

Query: 127 LIETYGHP----LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLEST 179
           L+  YG P    L  PSAN  G+IS +  +H+   L      ++ LI+DGG  + G+EST
Sbjct: 134 LLAAYGGPKHRGLTAPSANSFGRISPSTAQHVREDLGEKPAGKLDLILDGGPCEFGIEST 193

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQV 236
           ++N+       ILR G      + RA+  E+  C         P++ G LKSHYAP+++ 
Sbjct: 194 MINLSGSHP-EILRHG-----VITRAMLEEVLDCPVPDAGADAPRASGRLKSHYAPKTRA 247

Query: 237 RL 238
            L
Sbjct: 248 EL 249


>gi|34498673|ref|NP_902888.1| Sua5 family translation factor [Chromobacterium violaceum ATCC
           12472]
 gi|34104526|gb|AAQ60884.1| probable translation initiation protein, Sua5/YciO/YrdC family
           [Chromobacterium violaceum ATCC 12472]
          Length = 321

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 158/329 (48%), Gaps = 23/329 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ +S T    L +A   L AG  +A+PTETVYGLA D+  P A+  ++  K RPA +PL
Sbjct: 1   MKSLSPT-PEGLDQAAALLRAGELVAVPTETVYGLAADATQPDAVAAIFRAKNRPADHPL 59

Query: 61  ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+  +  + + AS  P  +  + + FWPGPLTLVL   ++  +  +  A   T   R 
Sbjct: 60  IVHLPGLEQLNEWASRVPDCAWPVIERFWPGPLTLVLP--ASEKVPAIVNAGQDTVALRW 117

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 + L++    P+A PSAN   +IS T  +H+  +++   I  ++DGG   +G+ES
Sbjct: 118 SSHPLLQALLDRLQRPVAAPSANPFCRISPTTAEHV-RANMEGRIAAVVDGGPCAVGIES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-R 237
           TI+++   +   ILRPG +    L   + +      D    P+ PG L SHYAP     R
Sbjct: 177 TILDLSGARPA-ILRPGAVTAAMLAPYLDLAETAAPD---APRVPGNLASHYAPHQPCYR 232

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA-------AFNLFNYMKIAD 290
           L A     R     +    +  I+        ++ G LK         A  L+  +  AD
Sbjct: 233 LEAAEAEERADDAGWRQAAVLAIDAPA-----ARCGWLKRMPPTPEGYAQALYAALHQAD 287

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319
            SG  S+     P+     A+ +RL+RAA
Sbjct: 288 ASGCPSVWIVLPPDEPAWRAVRDRLQRAA 316


>gi|237745647|ref|ZP_04576127.1| translation factor SUA5 [Oxalobacter formigenes HOxBLS]
 gi|229376998|gb|EEO27089.1| translation factor SUA5 [Oxalobacter formigenes HOxBLS]
          Length = 344

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 27/334 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +++ +  A   L++G  +A PTETVYGL  D+ NP A+  +Y +K RPA +PLI HV+
Sbjct: 1   MKNADDILAAARILESGRLVAFPTETVYGLGGDAENPAAVAAIYALKNRPASHPLIVHVA 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
             S +   +   P  +  L   FWPGPLTL+L     + + P       +   R P    
Sbjct: 61  SGSDIAYWSDRIPDEARKLMAAFWPGPLTLILK--RASHVLPDVAGGQDSVGLRCPSHPV 118

Query: 125 KK----LIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLEST 179
            +    L +     +A PSANR G +S T  +H+         +  I+DGG S++G+EST
Sbjct: 119 AQALLGLFKQGRGGVAAPSANRFGHVSPTMAQHVRDEFGDDPRLGAILDGGQSEVGIEST 178

Query: 180 IVN---VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS-- 234
           I++   ++    V +LRPG +    +   I +  +  V +   P++ G L SHYAPR+  
Sbjct: 179 ILDLSRIETAGPV-LLRPGKIGASQIAEVIGMMPK--VPDNGAPRASGTLASHYAPRTPV 235

Query: 235 ---------QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                    Q+ +R      R AL+ + ++P     +    + L     +   +  L+  
Sbjct: 236 AVIPSDKLLQLLVRLEENGHRVALLHYSSLPASRKMSLAGEVGLYCAPDVY--SHQLYAS 293

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++  D SGA  I   + P       +N+RL+RAA
Sbjct: 294 LRKLDRSGADVILVEATPETETWKGVNDRLKRAA 327


>gi|295673282|ref|XP_002797187.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis
           Pb01]
 gi|226282559|gb|EEH38125.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis
           Pb01]
          Length = 489

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 133/265 (50%), Gaps = 36/265 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L ++ E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKTLLESAEVLQTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKK----------HASVD----------------PLSLHLAKLFWPGPLTLVLDLLS 100
              +++          H   D                P+   L   FWPGPLT++L   +
Sbjct: 117 REQLQRILQSNSSSTDHGGSDSRKTRNQGREETNLIPPIYEPLISKFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 177 PSPLAPEVTSTLTTFGARMPSSPLARLLIHLADRPLAAPSANASTKPSPTTAQHVF-TDM 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213
              I +I+DGG   +G+EST+V+        ILRPGG+ IE ++     E       +  
Sbjct: 236 QGRIDIILDGGPCGVGVESTVVDGLLHPPA-ILRPGGIGIEEIRACPGWEDVRVGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238
           +     P++PGM   HY+P+++V L
Sbjct: 295 LQGKEAPRAPGMKYKHYSPKAKVVL 319


>gi|282850386|ref|ZP_06259765.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula ATCC 17745]
 gi|282579879|gb|EFB85283.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula ATCC 17745]
          Length = 343

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 39/323 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83
           ++IPTETVYGL  +  +  A+ ++Y  K RP+ NPLI HV +   +K   + +   +  L
Sbjct: 27  VSIPTETVYGLGANGLDSEAMDKIYAAKGRPSDNPLILHVPNSESIKSLVTEISATAQAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP----CGFTKKLIETYGHPLAIP 138
              FWPGPLT+    L  +D+ P  +T  L     R P    C   + L+E  G P+A P
Sbjct: 87  MDTFWPGPLTIT---LPKSDLVPDRATGGLSRVALRCPDHEAC---RVLLERAGIPIAAP 140

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ S T  + +  + +   I  I+D G   IG+EST+V V  + KV ILRPGG+ 
Sbjct: 141 SANISGRPSPTTAEDVY-NDMKGRISYILDAGPCTIGVESTVVEVH-DDKVIILRPGGIT 198

Query: 199 IETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
              L+  ++  +EY    V+  + P++PGM  +HYAP +   +  +  +P      F  +
Sbjct: 199 KAQLENVVAT-VEYDTALVNAATKPKAPGMKYTHYAPDAP--MTVVVGSPEAIACTFKEL 255

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNY--------MKIADDSGASSIAFS------- 300
             + IE  I  L   +T  L +   +   Y        + +  D   S + F+       
Sbjct: 256 S-EGIEGPIGCLVSRETYDLIKGNTDFMCYCFGHHGDALALGHDFYKSLLHFNENHVTLI 314

Query: 301 ---SIPNHGLGIAINNRLERAAA 320
               + + G G+AI NR+E+A++
Sbjct: 315 LAEGVDDDGFGVAIMNRMEKASS 337


>gi|242215074|ref|XP_002473355.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727523|gb|EED81439.1| predicted protein [Postia placenta Mad-698-R]
          Length = 399

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 168/371 (45%), Gaps = 54/371 (14%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I S+T   A+++  + ++    +A PTETVYGL   + +  A  R++  K RP  NPLI
Sbjct: 23  EITSVTTLEAIQRGAKQINECQTVAFPTETVYGLGALALDAVAASRIFSTKGRPPDNPLI 82

Query: 62  CHVSDISMVK----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HVS  +M+     +  ++      L + FWPGPLTL+    + T +  + TAN  T   
Sbjct: 83  VHVSSDAMLNTLLPEGYTISRTYEILIRHFWPGPLTLLFP-TNPTLVPSIITANQPTVAV 141

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + LI     P+A PSAN SG+ S T  +H+    +  ++ +I+DGG   +GL
Sbjct: 142 RMPSHPVARALIALADAPIAAPSANSSGRPSPTRAEHVF-KDLDGKLGVILDGGPCGVGL 200

Query: 177 ESTIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYCVDE---------------TSTP 220
           EST+++ +  +  +R+LRPGG+ +E L+  +  EL    D                   P
Sbjct: 201 ESTVIDGLHADGNIRVLRPGGVTVEDLESVLQRELGDSGDVPKVLVHRRDFRDEAIEQAP 260

Query: 221 QSPGMLKSHYAPRSQV-------------------RLRAIH--VNPREALIRFG------ 253
            +PGM   HY+P   V                    L ++H  V   E  ++ G      
Sbjct: 261 TTPGMKYRHYSPAVPVILLRTSSPPSDVTPTPIKTFLESLHNRVQGSEGHLKIGLLAPSD 320

Query: 254 -NVPIKNIENAIISLNLSKTGKLKE---AAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
             +P     ++         G + +   +A  LF+ +   D +G   I    I     G+
Sbjct: 321 SPLPTNFTSSSDFEWQTFPLGPIADPSISAQRLFDGLLTLDAAGVDLILIEEIKEEREGL 380

Query: 310 AINNRLERAAA 320
           A+ NR+ +AA 
Sbjct: 381 AVMNRVNKAAG 391


>gi|295707225|ref|YP_003600300.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium DSM 319]
 gi|294804884|gb|ADF41950.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium DSM 319]
          Length = 346

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 164/330 (49%), Gaps = 31/330 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L     +A PTETVYGL  D+ +  A+ +++  K RP+ NPLI H+ D   + 
Sbjct: 21  IEEAADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQL- 79

Query: 72  KHASVDPLSLHLAKL---FWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            H  V+ +     K+   FWPGPLT++L   D +S        TA L +   R+P     
Sbjct: 80  -HTFVESIPSKAEKVIDAFWPGPLTVILPKKDRVSDK-----VTAGLNSIAVRMPSHPVA 133

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L++    P+A PSAN SG+ S T   H++ + +   I  ++DGG + +G+EST+++  
Sbjct: 134 LALLKKVALPIAAPSANLSGKPSPTLAHHVM-NDLEGRISGVVDGGATGVGVESTVLDCT 192

Query: 185 CEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR-------- 233
            E  + ILRPGG+   E+E +   + V+     D+ + P+SPGM  +HYAP         
Sbjct: 193 EEIPI-ILRPGGITQKELENVIGPVKVDRALLSDKEA-PKSPGMKYTHYAPDAPLVIVDG 250

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIAD 290
           S    ++I    ++   R G +     E+A  +   +       L+  A +L+  ++  +
Sbjct: 251 SSDFFQSIIDRYKDQGKRVGVLTTSEHEDAYKADAVITCGSRSNLETVASHLYESLRSFN 310

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +     I   S    G+G A+ NRL +AA 
Sbjct: 311 EGDVDVIVSESFSEEGVGHAVMNRLMKAAG 340


>gi|70725920|ref|YP_252834.1| hypothetical protein SH0919 [Staphylococcus haemolyticus JCSC1435]
 gi|68446644|dbj|BAE04228.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 347

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 122/225 (54%), Gaps = 9/225 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           + D GL IAIPTETVYGL  D+RN  A+  +Y+ K RP+ NPLI H+ D S + +  S  
Sbjct: 28  YNDGGL-IAIPTETVYGLGADARNQYAVSNIYQAKGRPSDNPLIVHIHDKSQLDQIVSHL 86

Query: 78  PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPL 135
           P     L   FWPGP++ +L L        + T  L++   R+P     + I  Y   P+
Sbjct: 87  PEEAKCLMDEFWPGPISFILPLRQGYLCEKV-TGGLQSIAVRMPSHPIGRAILQYIDIPI 145

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+ S T  +H+  + +  +I  I++G  S+ GLEST+++   +   RI RPG
Sbjct: 146 AAPSANVSGRPSPTTFQHVF-NDLNGKIDGIVNGDQSEEGLESTVLDC-TQFPFRIARPG 203

Query: 196 GLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
            +    L      SVE EY  D  S P +PGM   HYAP + V +
Sbjct: 204 SITQAMLNDVFPGSVE-EYHYDVNSQPIAPGMKYKHYAPDTPVTM 247


>gi|323309143|gb|EGA62370.1| Sua5p [Saccharomyces cerevisiae FostersO]
          Length = 417

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 180/381 (47%), Gaps = 67/381 (17%)

Query: 5   SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   + D    +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 33  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92

Query: 61  ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105
           I HVS I  + +      H S   L  ++  ++       WPGPLT++L + S+  + + 
Sbjct: 93  ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH---------VNPREALIRFGNVPIK---NIENAII 265
              ++PGM   HY+P ++V L   H          +  E L R     +K   NI+   I
Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGXDRMERLKRLIETELKANRNIKKIAI 330

Query: 266 --SLNL----------------SKTGKL-------KEAAFNLFNYMKIADDSGASSIAF- 299
             SL L                SKT  +       +E   NLF  ++  D++    + F 
Sbjct: 331 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 390

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             I   G G+A+ NRL +AAA
Sbjct: 391 EGINEEGEGLAVMNRLRKAAA 411


>gi|91790454|ref|YP_551406.1| translation factor SUA5 [Polaromonas sp. JS666]
 gi|91699679|gb|ABE46508.1| translation factor SUA5 [Polaromonas sp. JS666]
          Length = 331

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 159/336 (47%), Gaps = 25/336 (7%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  TD  A+ +A   + AG  +  PTETVYGL  D+ +  A+  ++  K RPA +PLI 
Sbjct: 2   ILPGTDPQAIHEAARRIQAGGLVGFPTETVYGLGADASSDQAVAGIFSAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFR 118
           HV+D   V  +A SV P +  L + FWPGPLT++L   + ++        +  L+     
Sbjct: 62  HVADAQQVADYASSVPPFAARLMQAFWPGPLTVILPRREGVAAAAAGGQGSIGLRCPAHP 121

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           V   F +         +A PSANR G++S T  +H+       +  L++DGG  ++G+ES
Sbjct: 122 VALAFLRACATG----VAGPSANRFGRVSPTTAQHVQQE--FGDSLLVLDGGPCEVGIES 175

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETS----TPQSPGMLKSHYA 231
           +IV+    + V +LRPG L    L+ A     ++ +    E +     P++ G L++HYA
Sbjct: 176 SIVDCTRGRPV-LLRPGVLTRAQLEAACGEPVLDKDELAREAAGLGDAPRASGTLEAHYA 234

Query: 232 PRSQVRL-RAIHVNPREALIRFGNVPIKNIENAIISLNLSKT------GKLKEAAFNLFN 284
           P ++VRL  A  +     L+      I     +I+ +   +             A  LF 
Sbjct: 235 PHAKVRLMDAGAIQTALDLLGADAAHIAIYARSIVRIKSDQVLYRRMPDDAAATAQQLFA 294

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D  G   I    +P       + +RL RAAA
Sbjct: 295 VLRDFDAQGVKLIWIEHLPATAAWDGVRDRLARAAA 330


>gi|119193304|ref|XP_001247258.1| hypothetical protein CIMG_01029 [Coccidioides immitis RS]
          Length = 736

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 126/239 (52%), Gaps = 26/239 (10%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK----------- 72
           P+A PTETVYGL  D+    A++ +Y  K+RP+ NPLI HVS    +++           
Sbjct: 479 PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTLN 538

Query: 73  ------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
                  + + P+   L + FWPGPLT+++     + + P  T+NL T   R+P     +
Sbjct: 539 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 598

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    PLA PSAN S + S T  +H+  + +   I +I+DGG   +G+EST+V+   
Sbjct: 599 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGPCGVGVESTVVD-GL 656

Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
                ILRPGG+ IE ++     E       +  +    TP++PGM   HY+PR++V L
Sbjct: 657 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVL 715


>gi|329767330|ref|ZP_08258855.1| hypothetical protein HMPREF0428_00552 [Gemella haemolysans M341]
 gi|328836019|gb|EGF85710.1| hypothetical protein HMPREF0428_00552 [Gemella haemolysans M341]
          Length = 343

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 167/327 (51%), Gaps = 21/327 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           K   +   G  IAIPTETVYGL+ ++ N  A+ ++YE K RP+ NPLI H  ++S +   
Sbjct: 20  KLTTYYKEGKLIAIPTETVYGLSANAMNDEAVSKIYEAKGRPSDNPLIVHFYEMSQLDSI 79

Query: 74  ASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETY 131
            + +  ++  L   FWPGP+TL+L+      +    TA L T   R+P   T +++++  
Sbjct: 80  VNYNDENIKKLINNFWPGPMTLILNAKDNNGVSKKVTAGLNTLAVRMPSNITAREILKET 139

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VR 190
              LA PSAN SG+ S T  +H+    +  +I +II+   S IGLEST+++  C +  + 
Sbjct: 140 EVLLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSDIGLESTVID--CTRYPLV 196

Query: 191 ILRPGGLEIETLKRAI---SVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP- 245
           I RPG +  E ++  +   SV+  E  + + +TP +PGM   HY+P + + L        
Sbjct: 197 IARPGEITKEDIEGVLGEGSVKYNEEILTKNTTPIAPGMKYRHYSPEADLVLFNDSFEKL 256

Query: 246 ----REALIRFGNVPIKNIENAIISLNLS------KTGKLKEAAFNLFNYMKIADDSGAS 295
               +E   + G +  K +E+ +  LN+S          ++++  NL+N ++  D+    
Sbjct: 257 ISILKERDKKTGFITYKEMESEVDFLNVSVKYLADNEKSVEQSNKNLYNILREFDEEEVE 316

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322
            I    I       A+ NRL +A + +
Sbjct: 317 EIFILPIEETKENKALLNRLNKAISKK 343


>gi|320170442|gb|EFW47341.1| Sua5/YciO/YrdC/YwlC family protein [Capsaspora owczarzaki ATCC
           30864]
          Length = 331

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 157/324 (48%), Gaps = 37/324 (11%)

Query: 30  ETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSLHLAKLF 87
           +TVYGLA ++ +  A+ +++  K RPA NPLI HV+D S +++     +      L   F
Sbjct: 3   QTVYGLAANAFSDDAVAKIFRAKNRPADNPLIVHVADESQLREVVEGEISQREQQLIAAF 62

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI 146
           WPGPLTL+L       +  L TA L T   R+P     K +I   G PLA PSAN SG+ 
Sbjct: 63  WPGPLTLILP--RKISVSRLVTAGLTTVGVRMPSHPVAKAIIARCGKPLAAPSANISGRP 120

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL---EIETLK 203
           S T   H++   + K +  I+DGG + +G+EST+++   E  + ILRPGG+   EIET+ 
Sbjct: 121 SPTCGAHVIGDMMGK-VAGIVDGGATGVGVESTVIDCSPEIPI-ILRPGGITKEEIETII 178

Query: 204 RAISVELEYCVDE------------TSTPQSPGMLKSHYAPRS------------QVRLR 239
             ++   E   +E               P++PGM  +HYAP++            Q  + 
Sbjct: 179 GPVTYAQELHSNERPESAKDVSALSGHVPRAPGMKYAHYAPKAPVTVVEGSPQFLQSLVD 238

Query: 240 AIH-VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS--S 296
           A H  +P   +        +    A + +       +   A +L++ ++  D +  S   
Sbjct: 239 AHHQQHPTSKIGVLATDESRGQYRADVVVTCGARSDVASIARSLYDALRQFDIATPSVDC 298

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I   S    GLG A+ NRL +AA+
Sbjct: 299 IYSESFSTDGLGAAVMNRLLKAAS 322


>gi|241563383|ref|XP_002401681.1| sua5, putative [Ixodes scapularis]
 gi|215501873|gb|EEC11367.1| sua5, putative [Ixodes scapularis]
          Length = 227

 Score =  125 bits (315), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/214 (37%), Positives = 118/214 (55%), Gaps = 11/214 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E++ +G  + +PTETVYG+  D+ N  A  ++++ K RPA+NPLI HV+ I   K
Sbjct: 16  ISKAVEYIKSGKVVVLPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + L+  +A+ FWPGPL++V+ L    +I P  T  L T   R+P      +LI  
Sbjct: 76  EIGEFNDLATKIAEKFWPGPLSIVVPLKVNANIAPSVTVGLNTIAIRMPSYPLALELIRQ 135

Query: 131 YGHPLAIPSANRSGQISITNVKHIL-----SSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            G P+A PSAN S  IS TNV+H+      ++ I    P I     S+ GLESTI++   
Sbjct: 136 SGVPIAAPSANPSNYISPTNVEHVTKHFSENAEIFILAPEIYQ---SEYGLESTIIDTTT 192

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETST 219
                ILR G +  E L+  + V++     ETST
Sbjct: 193 VTPT-ILREGFITAEILEEVLGVKV-LKASETST 224


>gi|297618444|ref|YP_003703603.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297146281|gb|ADI03038.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 336

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 163/326 (50%), Gaps = 25/326 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +++ + +A   +  G  +A PTETVYGL  D+ N  A+ +++  K R   NPLI H+S++
Sbjct: 17  EASVIAEAAALIRKGEVVAFPTETVYGLGADAFNEEAVCKIFIAKGRQPDNPLIVHISNM 76

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S V     SV   +  L   FWPGPLTLV++ L +  +   + A   T   R+P      
Sbjct: 77  SQVSALIKSVPDEARLLMDRFWPGPLTLVMESLPS--VASAARAGGNTVGVRMPRHPVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G PLA PSAN SG+ S T  +H+  + +   I  I+D G + +G+EST++++  
Sbjct: 135 ALIDEAG-PLAAPSANLSGRPSPTTPEHV-KNDLDGRISAILDAGPTGMGIESTVLDM-T 191

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238
           +K  RILRPGG+ +E L+  +       + ET+  + P     HY  R++V L       
Sbjct: 192 QKPFRILRPGGISLEELEEVLP-----GMVETAEAKGPADRYPHYQTRARVILLSEPADV 246

Query: 239 -RAIHVNPRE----ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
             A+H   ++     L+       ++IE     L        +EA   L+  ++ AD  G
Sbjct: 247 ASALHEYKKQGKKVGLVAHSYEEYRHIEKE-SDLVYWLPPSAEEAGKRLYAVLRDADQRG 305

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
              + F   P  G G A+  RL++++
Sbjct: 306 LDILFFEPYPEEGKGSALMYRLKKSS 331


>gi|294501877|ref|YP_003565577.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium QM B1551]
 gi|294351814|gb|ADE72143.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium QM B1551]
          Length = 346

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 165/330 (50%), Gaps = 31/330 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L     +A PTETVYGL  D+ +  A+ +++  K RP+ NPLI H+ D   + 
Sbjct: 21  IEEAADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQL- 79

Query: 72  KHASVDPLSLHLAKL---FWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            H  V+ +     K+   FWPGPLT++L   D +S        TA L +   R+P     
Sbjct: 80  -HTFVESIPSKAEKVIDAFWPGPLTVILPKKDRVSDK-----VTAGLNSIAVRMPSHPVA 133

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L++    P+A PSAN SG+ S T   H++ + +   I  ++DGG + +G+EST+++  
Sbjct: 134 LALLKKVALPIAAPSANLSGKPSPTLAHHVM-NDLEGRISGVVDGGATGVGVESTVLDCT 192

Query: 185 CEKKVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR-------- 233
            E  + ILRPGG+   E+E +   + V+     D+ + P+SPGM  +HYAP         
Sbjct: 193 EEIPI-ILRPGGITQKELENVIGPVKVDRALLSDKEA-PKSPGMKYTHYAPDAPLVIVDG 250

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG---KLKEAAFNLFNYMKIAD 290
           S    ++I    ++   R G +     E+A  +  +   G    L+  A +L+  ++  +
Sbjct: 251 SSDFFQSIIDGYKDQGKRVGVLTTSEHEDAYKADAVITCGSRSNLETVASHLYESLRSFN 310

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +     I   S    G+G A+ NRL +AA 
Sbjct: 311 ECDVDIIVSESFSEEGVGHAVMNRLMKAAG 340


>gi|291532654|emb|CBL05767.1| translation factor SUA5 [Megamonas hypermegale ART12/1]
          Length = 271

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 12/237 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  AL++A + +  G  +A PTETVYGL  D  N  A + +Y  K RP+ NPLI H++D 
Sbjct: 12  DDEALKRAGQCIKDGGLVAFPTETVYGLGGDGLNEVASKNIYLAKGRPSDNPLILHINDQ 71

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FT 124
            M+ +  S V P++  +   F PGP+T++   L  ++I P + T  L T   R+P     
Sbjct: 72  KMLGRIVSEVTPMAKKIMTAFCPGPITII---LPKSNIVPKAVTGGLDTIAVRMPDNDIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI+    P+A PSAN SG+ S T  + +    +   I +++DGG  + G+ESTIV+  
Sbjct: 129 RALIKYADTPIAAPSANISGRPSPTTAQAVY-KDLQSRIDMVLDGGACQFGVESTIVD-- 185

Query: 185 CEKKVR-ILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           C + V  ILRPG +  E L+    V    +  V     P++PGM   HYAP+  + L
Sbjct: 186 CTEDVPIILRPGAITKEMLEEIFPVVKIDKAIVGANVVPKAPGMKYKHYAPKVDMIL 242


>gi|296813235|ref|XP_002846955.1| translation initiation protein Sua5 [Arthroderma otae CBS 113480]
 gi|238842211|gb|EEQ31873.1| translation initiation protein Sua5 [Arthroderma otae CBS 113480]
          Length = 447

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/252 (34%), Positives = 138/252 (54%), Gaps = 26/252 (10%)

Query: 11  ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           AL +A E +  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS    
Sbjct: 48  ALLEAAEAIRTSDVPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSSREQ 107

Query: 70  VKK---------HASVDPLSLHLAKL-------FWPGPLTLVLDLLSTTDIHPLSTANLK 113
           +++          A  +P +  + K+       FWPG L+++L   S   + P  TA+L 
Sbjct: 108 LERLLQTSQPSNGAIHNPTASPIPKIYEPVIEKFWPGALSIILPNPSHLPLAPEVTASLS 167

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P     + LI     P+A PSAN S + S T  +H+  + +   I +I+DGG  
Sbjct: 168 TFAVRMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVY-TDLQGRIDIILDGGPC 226

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEY---CVDETSTPQSPGML 226
            +G+EST+V+        ILRPGG+ I+ L+      +V++ Y    +   +TP++PGM 
Sbjct: 227 GVGVESTVVD-GLSSPPAILRPGGVGIDELRTCPGWENVQIGYKDGALQGKATPRAPGMK 285

Query: 227 KSHYAPRSQVRL 238
             HY+P+++V L
Sbjct: 286 YKHYSPKARVVL 297


>gi|289423366|ref|ZP_06425174.1| SUA5 protein [Peptostreptococcus anaerobius 653-L]
 gi|289156297|gb|EFD04954.1| SUA5 protein [Peptostreptococcus anaerobius 653-L]
          Length = 349

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 165/346 (47%), Gaps = 45/346 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +  + L  G  +  PTETVYGL  ++ +  A +++YE K RP+ NPL+ HV D 
Sbjct: 15  DQDIIEEFAKMLAEGKTVIFPTETVYGLGANALDEKAAQKIYEAKGRPSDNPLLVHVCDK 74

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V      VD  +  L   FWPGPLT+V        I   ++  L T   R+P     +
Sbjct: 75  EDVYDLVEYVDDKAKILIDKFWPGPLTIVFKKKPI--IPDRTSGGLDTVAIRMPSDEIAR 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++I   G P+A PSAN SG+ S T   HI+   +   +  I+ G     G+ESTIV+V  
Sbjct: 133 RIIRAAGVPIAAPSANISGRPSPTRPDHII-RDMTGRVDGILAGAPCTYGVESTIVDVSG 191

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +  V +LRPG + +E +   +    L+  +   D+    ++PGM  +HY+PR++V +  +
Sbjct: 192 DYPV-VLRPGSVTLEMIAGVLGDARLDPSILNKDDNIKAKAPGMKYTHYSPRAEVYIVDL 250

Query: 242 H----VNPREALI--------------------RFGNVPIKNIENAIISLNLSKTGKLKE 277
                V+  + L+                    RF  V I+     I SL     G+ +E
Sbjct: 251 KGDDFVDKIKELVGQNADMGKKTGLMCMDIDMDRFDGVDIE-----IFSL-----GQTEE 300

Query: 278 -AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            AA  LF+ +   D  G   I   +     +G+AI NRL+++A  R
Sbjct: 301 IAAKRLFDGLIDLDKRGVDVIYSVAFEEKNVGVAIMNRLKKSAGYR 346


>gi|146092262|ref|XP_001470247.1| hypothetical protein [Leishmania infantum]
 gi|134085041|emb|CAM69442.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 386

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 170/366 (46%), Gaps = 57/366 (15%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    LR+A + L  G  +AIPTETVYGL  ++   +A++ +Y +K RP  +PLICHV  
Sbjct: 7   TSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPLICHVYT 66

Query: 67  ISMVKK-------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           +   +K         +V+ L+  +    WPGPLT+V     T  +    T        R+
Sbjct: 67  LDGARKLWDLKWDEGAVE-LACTIGAALWPGPLTIVCKASPT--LPDCVTGGSGYVGARI 123

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLE 177
           P    T KL+E    P+A PSAN  G +S T  +H+      ++   LIIDGG S IG+E
Sbjct: 124 PNNPITLKLLEMADVPVAAPSANTFGHVSPTTAQHVYDDLAARDPELLIIDGGQSAIGIE 183

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-------VEL---EYCVDETSTPQ-SPGML 226
           ST+  V+ +  V +LR G + +  + RAI+       VE+       D T  P  SPG L
Sbjct: 184 STVAKVEAKDLVVVLRRGCITVSMIHRAIADRYPQTRVEIRDTRIMCDPTKAPMVSPGQL 243

Query: 227 KSHYAPRSQVRLRAIHVNPREALIRFGNVPI-----KNI----ENAIISLN--------- 268
            +HY+P     L  +      AL    +VP+     K++    E  ++  N         
Sbjct: 244 LTHYSPHVPSSL--LTPGSLAALTASADVPVYVHRGKDVVPLCETVVLDFNGYLSRFRDT 301

Query: 269 ------LSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIPN----HGLGIAINNR 314
                 +S  G  +E  + +F+ ++  +   GA  + F   S  P+      L  A+ +R
Sbjct: 302 CLFYHDMSPDGNPEEGCYAVFDALRATETIKGAKGLVFPLISEWPHDKAKEDLLTAMEDR 361

Query: 315 LERAAA 320
           L RAA+
Sbjct: 362 LFRAAS 367


>gi|154281557|ref|XP_001541591.1| hypothetical protein HCAG_03689 [Ajellomyces capsulatus NAm1]
 gi|150411770|gb|EDN07158.1| hypothetical protein HCAG_03689 [Ajellomyces capsulatus NAm1]
          Length = 490

 Score =  125 bits (314), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 138/265 (52%), Gaps = 36/265 (13%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKK----HAS----------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100
              +++    H+S                      + P+   L   FWPGPLT++L   +
Sbjct: 117 KEQLQRLLQPHSSSPSRGEYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L+T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---C 213
              I +I+DGG   +G+EST+V+        +LRPGG+ IE ++       V++ Y    
Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLLYPPA-VLRPGGVGIEEIRACPGWEDVQIGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238
           +     P++PGM   HY+P+++V L
Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVL 319


>gi|294339381|emb|CAZ87737.1| putative Translation factor, SUA5 type [Thiomonas sp. 3As]
          Length = 334

 Score =  125 bits (314), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 153/320 (47%), Gaps = 23/320 (7%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L+AG  + +PTETVYGLA D+ N  A+ R+Y  K RPA +P+I H+   + +   
Sbjct: 17  EAVRRLEAGELVGLPTETVYGLAADAENVQAVARIYAAKGRPADHPVIVHIHRAADLGHW 76

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           AS  P +   LA  FWPGPLTL+L       D        +   C   P       I   
Sbjct: 77  ASEVPETARKLAAAFWPGPLTLILPRKPGVADACAGGQNTIGLRCPSHPVAQAVLAIFKG 136

Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           G   LA PSANR G+IS T   H+  + +  ++ L++DGG   +G+ESTIV+   +   R
Sbjct: 137 GQGGLAAPSANRFGRISPTTAAHV-HAELGDDL-LVLDGGACAVGIESTIVDCTAQPP-R 193

Query: 191 ILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRS--------QVRLR-- 239
           ILRPG L+   + + + V E +      S P+  G+L +HYAPR+        Q+  R  
Sbjct: 194 ILRPGQLQAADIAQTLGVAEADLLRPAESAPRVAGVLPAHYAPRTPLQWCSREQINARWE 253

Query: 240 -AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
                  R  ++ F   P+     + ++L        ++    L+  ++  D +G   I 
Sbjct: 254 IGTSAGRRIGVLAFPPQPLAP-HPSWVTLPADPAAYAQQ----LYAVLRRLDAAGLEEIC 308

Query: 299 FSSIPNHGLGIAINNRLERA 318
              +P     +A+ +RL RA
Sbjct: 309 VEVLPPSPAWLALRDRLTRA 328


>gi|301116637|ref|XP_002906047.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262109347|gb|EEY67399.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 363

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 176/358 (49%), Gaps = 39/358 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+     A + L  G  +A PTETVYGL  ++ N  A+  ++E K RP  +PLI HV  +
Sbjct: 8   DAEGFSFAAQQLRLGQLVAFPTETVYGLGANALNSEAVLAIFEAKARPLTDPLIVHVPAL 67

Query: 68  SMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
               K   + P        L + FWPGPLTL+    +  ++  + +AN      R P   
Sbjct: 68  DDAVKLVDMTPTGRQAFECLGRAFWPGPLTLIAK--AVPELPLMLSANTGFVGLRCPKHP 125

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLI--IDGGISKIGLEST 179
             + L++    P+A PSANR G +S T  KH++     C+ + +I   + G  ++G+EST
Sbjct: 126 IAQALLKEAKVPVAAPSANRFGHVSPTTAKHVMDDLGACENLSVIEATEEGCCEVGIEST 185

Query: 180 IVNVQCEK-KVRILRPGGLEIETLK--------------RAISVELEYCVDETSTPQSPG 224
           +V +  E+ K+ + R GG+  + LK                ++++ E  +      Q+PG
Sbjct: 186 VVKIVPEECKLIVFRRGGVSEQALKLVLEDNAELLGGQYEVVTIQKEAKMQTKEAQQAPG 245

Query: 225 MLKSHYAPRSQVRL------RAIHVNPREALIRFGNV----PIKNIENAIIS-LNLSKTG 273
            + +HYAP     L        +  + ++ L R+  +     + ++++ +   L+LS TG
Sbjct: 246 QMITHYAPDVDTYLYQADAAETMDASRKQDLSRWVVIDFHGKLSDLKDRVGGYLDLSPTG 305

Query: 274 KLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAAPRNQSQRI 328
            + EA+  +F+ ++ +++  G   +  + + +  H    A+++R+ RAA+ + ++ ++
Sbjct: 306 DVAEASQRIFDSLRWSENVQGVERVLITGVSSETHEQAAALHDRMYRAASGKQRALQL 363


>gi|323527240|ref|YP_004229393.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001]
 gi|323384242|gb|ADX56333.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001]
          Length = 360

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 160/337 (47%), Gaps = 49/337 (14%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVK 71
           A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   D +   
Sbjct: 34  AAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQGDPNYWV 93

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +H   +  +  L   FWPGPLTL+L       I    +    +   R P     + L+E 
Sbjct: 94  EHLPQE--AQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQALLEA 149

Query: 131 Y-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIV 181
           +     GH  +A PSANR G +S T  +H+     S+I      ++DGG S +G+ESTI+
Sbjct: 150 FSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEFGSAIH-----VLDGGASDVGIESTIL 204

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQVRLR 239
           ++       +LRPG +  + +   +  E     D  + + P++ G LK+HYAPR+ + L 
Sbjct: 205 DL-SRGFPALLRPGRVTPQEIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 262

Query: 240 AI-HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLF 283
               + P  A    G       E   +    S+ G+  +A               A  L+
Sbjct: 263 PFPALEPLLAARAAG-------ERVALVARASRAGQWADAEGVHFIAAPEDPHVYARELY 315

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 316 GLLRALDRANVARILIEKLPDTIEWIAVNDRLGRAAA 352


>gi|149921509|ref|ZP_01909960.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1]
 gi|149817584|gb|EDM77052.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 155/321 (48%), Gaps = 25/321 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83
           +A PTETVYGL  ++ +P A+  +Y  K RP+ NPLI HV D    +   A+  PL+  L
Sbjct: 39  VAFPTETVYGLGANALDPRAVAGIYAAKGRPSTNPLIVHVRDSDHARTLVAAWPPLAQAL 98

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           A+ FWPGPLTLVL       +  L +A L T   R P     + L+     PLA PSANR
Sbjct: 99  AEAFWPGPLTLVLPKRGL--VPDLVSAGLDTVGVRAPAHPVAQALLRAALLPLAAPSANR 156

Query: 143 SGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           S  IS T   H+  S   +  +   I+DGG +++G+EST++++    +  +LR GG+   
Sbjct: 157 SQAISPTTAAHVARSLAHVDADALTILDGGTTRVGIESTVLDL-SRGQPTVLRLGGVSTR 215

Query: 201 TLKRAISVELEYCV----------DETSTPQSPGMLKSHYAPRSQV------RLRAIHVN 244
            L+  ++   E             D      SPGM   HYAP  QV       LRA    
Sbjct: 216 ALEAELARHPELGARLVHATNGSKDTEVARPSPGMDARHYAPAGQVLLAPLDTLRARLER 275

Query: 245 PREALIR-FGNVPIKNIEN-AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
             +AL R  G +   ++E    +  +L       + A  L+  +   D+ G  S+   ++
Sbjct: 276 DGDALPRPLGALTRGDVEALGAVDHHLRMPDDASDYASMLYAALHTLDELGCGSVLIEAV 335

Query: 303 PNHGLGIAINNRLERAAAPRN 323
           P+     A+ +RL RAA PR 
Sbjct: 336 PDAPSWAAVADRLRRAATPRG 356


>gi|308162394|gb|EFO64793.1| SUA5 protein [Giardia lamblia P15]
          Length = 369

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 177/366 (48%), Gaps = 54/366 (14%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T S  L  A   L  G  +AIPTETVYGLA D+ + TA  +++ +K+RPA +PLI
Sbjct: 4   RILGTTQSE-LADAAGALQRGDLVAIPTETVYGLAADALSETACVKIFALKQRPASDPLI 62

Query: 62  CHVSDISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            H+S  S +   A     V P+   LA  FWPGPLT+VL   +   +  + TA  +T   
Sbjct: 63  VHISHSSQLPIIAVISTEVSPIVDALAATFWPGPLTMVLP--AAPCVPSIVTAGSQTVGV 120

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + +IE    PLA PSAN  G IS T  + + +  +  ++ LI+DGG   +G+
Sbjct: 121 RMPRHPVARAIIELAARPLAAPSANMFGSISPTQPEDVAAEFVNSDL-LIVDGGRCDVGI 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQ-----SPGM 225
           EST++ ++ +  + ILR G +  E L  A+S      V +E  V  +S  Q     SPG 
Sbjct: 180 ESTVLLIE-KDCLTILRRGQVTEEMLIAALSMNILNHVRIETRVLSSSDIQSKAVSSPGQ 238

Query: 226 LKSHYAPRSQVRL------------RA------------IHVNPREALIRFGNVPIKNIE 261
              HY+PR+   L            RA            +  NP  A ++  +V +K++ 
Sbjct: 239 FLRHYSPRTVCYLVMKGGPMLPGAVRATLPAHLDGFVVVLDCNPAFAELK-PDVLLKSLA 297

Query: 262 NAIIS-------LNLSKTGKLKEAAFNLFNYMKIADDSGASSI-AFSSIPNHGLGIAINN 313
             + +       L       L+  A  LF  ++ AD  G + I A    P  GL  A+ +
Sbjct: 298 GLLPAGTEPTRLLRAYSAPTLEAVAQGLFEALRRADRLGPACILALPPQPARGLADALLD 357

Query: 314 RLERAA 319
           RL RAA
Sbjct: 358 RLFRAA 363


>gi|325093106|gb|EGC46416.1| translation initiation protein Sua5 [Ajellomyces capsulatus H88]
          Length = 490

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 137/265 (51%), Gaps = 36/265 (13%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKK----HAS----------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100
              +++    H+S                      + P+   L   FWPGPLT++L   +
Sbjct: 117 REQLQRLLQPHSSSPSQGGYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNQT 176

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L+T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---C 213
              I +I+DGG   +G+EST+V+        +LRPGG+ IE ++       V++ Y    
Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEDVQIGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238
           +     P +PGM   HY+P+++V L
Sbjct: 295 LQGKEVPLAPGMKYKHYSPKAKVVL 319


>gi|50290007|ref|XP_447435.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526745|emb|CAG60372.1| unnamed protein product [Candida glabrata]
          Length = 422

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/249 (35%), Positives = 125/249 (50%), Gaps = 24/249 (9%)

Query: 10  NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +AL KA   + D    +A PTETVYGL   S N  ++R +Y+ K RP+ NPLI HVS I 
Sbjct: 51  DALLKAAHIIRDTEETVAFPTETVYGLGGSSLNDNSVRNIYKAKNRPSDNPLITHVSSID 110

Query: 69  MVKKHASVD----------PLSLH-LAKLFWPGPLTLVLDLLSTTDI--HPLSTANLKTA 115
            + +    D          P   H L +  WPGPLT++L +    ++    L+T +  T 
Sbjct: 111 QLNRKIYNDYEDGDILRNIPKIYHPLIEKLWPGPLTILLPIPPERNVSLSKLTTGDQPTF 170

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI     P+A PSAN S + S T   H+    +   IPLIIDGG   +
Sbjct: 171 AVRIPANSIARALIALADTPIAAPSANASTRPSPTLASHVY-HDLKGRIPLIIDGGACNV 229

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVDETSTPQSPGMLK 227
           G+EST+V+  C     +LRPGG   E +        R   VE +  + E    ++PGM  
Sbjct: 230 GVESTVVDGLCLPPA-LLRPGGFTYEDILHLGGESWRNCKVENKKTLSEGEKVRTPGMKY 288

Query: 228 SHYAPRSQV 236
            HYAP ++V
Sbjct: 289 KHYAPSAKV 297


>gi|327541326|gb|EGF27868.1| Translation factor, SUA5 type [Rhodopirellula baltica WH47]
          Length = 372

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 157/338 (46%), Gaps = 32/338 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++R A + L  G  I +PTETVYGLA     P ++ +++  K+RP+ NPLI HV D S V
Sbjct: 29  SIRLAGQALRDGKLIGLPTETVYGLAARGDQPDSVAKIFAAKQRPSTNPLILHVGDASAV 88

Query: 71  KKHASVDPL----SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
                +D          A   WPGPLTLVL    +  +    TA   T   RVP      
Sbjct: 89  HPLVVLDSAITRRRFEAASSLWPGPLTLVLP--KSEAVLDCVTAGGNTVAVRVPAHPVAL 146

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-Q 184
           +L+     P+A PSAN S  +S T  +H+ +  +   I  ++DGG+  +GLEST++++  
Sbjct: 147 QLLREVSLPIAAPSANVSNYVSPTRPEHV-TDGLADCIEWVLDGGVCDVGLESTVLSIAD 205

Query: 185 CEKKVRILRPGGLEIETLK--------RAISVELEYCVDETSTP-QSPGMLKSHYAPRSQ 235
                 ILR G L    L+         A S  +E     +  P  SPG+ + HY+PR+ 
Sbjct: 206 PNAPPTILREGVLSATKLESVFGEPVLSASSSNMELPHPPSDAPAASPGLHRRHYSPRTP 265

Query: 236 VRL--RAIHVNPREALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKIA 289
           +RL     H +P    +R   + ++   N++       +LS  G   E A  L+  ++ A
Sbjct: 266 LRLVRETEHASPANNDLRVLRIRLRGPANSLPGYADVWSLSAVGDPLEIANRLYETLRRA 325

Query: 290 DDSGASSIAFSSI--------PNHGLGIAINNRLERAA 319
           D      I    +         N  L  AI++RL RA+
Sbjct: 326 DSGEFDQIEIDQMNVEDWIESGNANLIAAISDRLHRAS 363


>gi|116620704|ref|YP_822860.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076]
 gi|116223866|gb|ABJ82575.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076]
          Length = 288

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 144/307 (46%), Gaps = 25/307 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E +  G  +A PTETVYGL  ++ +  A+ R++E K RP  +PLI HV  + M +  +
Sbjct: 4   AAELIRGGKLVAFPTETVYGLGANALDADAVARIFEAKGRPRTSPLIVHVDSVEMAQTLS 63

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
              P +   LA+++WPGPLTLV  +     I  + TA L T   R+P      +LI   G
Sbjct: 64  DDWPDTAELLARIYWPGPLTLV--VAKHPGIPDIVTAGLPTVGLRMPAHPMALELIREAG 121

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSANR  ++S T+  HI   S+       +DGG S++G+EST++++       +L
Sbjct: 122 VPIAAPSANRFTELSPTSAAHI-PESLAD---FTLDGGPSQVGIESTVLSLVAGPT--LL 175

Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           RPG + ++ L+  I               +PGM   HY P + + L       +   +R 
Sbjct: 176 RPGVIPVDELESLIGPIARGVAHVQDAHPAPGMHTRHYRPSTPLYLGEFPAEGKGVFLRI 235

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
           G               + +  +   AA  L+  +   D  G   IA    P+      + 
Sbjct: 236 G-------------YEMPEDPRAYAAA--LYETLHHLDTEGLDWIAVEVPPDTPEWAGVL 280

Query: 313 NRLERAA 319
           +RL RAA
Sbjct: 281 DRLRRAA 287


>gi|307730877|ref|YP_003908101.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003]
 gi|307585412|gb|ADN58810.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003]
          Length = 357

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 163/346 (47%), Gaps = 44/346 (12%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++ +T +  +  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I 
Sbjct: 20  VLPVTAAQ-IEHAAALLDAGGLVAFPTETVYGLGGDAQNPDAVARIYAAKGRPANHPVIV 78

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H++            P     L   FWPGPLTL+L       I    +    +   R P 
Sbjct: 79  HLAPQGDPGYWVEQLPQEAQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPS 136

Query: 122 G-FTKKLIETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGI 171
               + L+E +     GH  +A PSANR G +S T  +H+     ++I      ++DGG 
Sbjct: 137 HPVAQALLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEFGAAIH-----VLDGGA 191

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSH 229
           S +G+ESTI+++       +LRPG +  + +   +  E     D  + + P++ G LK+H
Sbjct: 192 SDVGIESTILDL-SRGFPALLRPGRVTPQEIADVLG-EAPRLPDGSDATAPRASGTLKAH 249

Query: 230 YAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA----------- 278
           YAPR+ + L  +  N  E L+          E   +    S+ G+  +A           
Sbjct: 250 YAPRTPLAL--LPFNALEPLL----AGRAAGERVALVARASRAGQWADAEGVHFIAAPED 303

Query: 279 ----AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
               A  L+  ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 304 PHVYARELYGLLRALDRANVARILIEKLPDTIEWIAVNDRLGRAAA 349


>gi|124265490|ref|YP_001019494.1| translation factor SUA5 [Methylibium petroleiphilum PM1]
 gi|124258265|gb|ABM93259.1| translation factor SUA5 [Methylibium petroleiphilum PM1]
          Length = 335

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 160/347 (46%), Gaps = 56/347 (16%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68
            A+ +A   L AG  +A PTETVYGL   + +  A+ +++  K RP  +PLI HV     
Sbjct: 10  EAVAEAARLLAAGHLVAFPTETVYGLGARADDDAAVAKIFAAKGRPTDHPLIVHVADAAG 69

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI---------------HPLSTANLK 113
                A + PL+  L   FWPG LT+++   +                   HP++ A L+
Sbjct: 70  AQAFAAELPPLAQRLIAAFWPGTLTVIVSRRAGVAAAASGGQPSIGLRCPSHPVAQALLR 129

Query: 114 TACFRVPCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           +A                G P +A PSANR G++S T   H+        +  ++DGG  
Sbjct: 130 SAA-------------ALGVPGVAGPSANRYGRVSPTRAAHVEGEFDAALV--VLDGGDC 174

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHY 230
           ++G+ESTIV+      V +LRPG L  E ++ A    L    D    S P++PG L SHY
Sbjct: 175 EVGIESTIVDCTRGHPV-LLRPGVLPRERIEAAAGERLLDAADALAGSAPRAPGTLASHY 233

Query: 231 APRSQVRL-------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL-------- 275
           APR+ +RL        A+ V P +AL + G   +     A+ S ++S   +L        
Sbjct: 234 APRATLRLMPATALRTALEVLPTDALPKRGGSRL-----AVYSRSVSPPSRLTARRMPDD 288

Query: 276 -KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
              AA  LF+ ++  DD G   I     P       + +RL+RAAAP
Sbjct: 289 PAAAAHELFSVLRELDDEGVQLIWVEEPPAGPAWEGVRDRLQRAAAP 335


>gi|296157275|ref|ZP_06840111.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1]
 gi|295892611|gb|EFG72393.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1]
          Length = 346

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 153/336 (45%), Gaps = 47/336 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++      
Sbjct: 19  IEHAAALLDAGELVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQGDPN 78

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P     L   FWPGPLTL+L       I    +    +   R P     + L+E
Sbjct: 79  YWVEYLPAEAQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVAQALLE 136

Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI+++
Sbjct: 137 AFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTIHVLDGGASDVGIESTILDL 194

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQVRLRAI 241
                  +LRPG +  + +   +  E     D  + + P++ G LK+HYAPR+ +     
Sbjct: 195 -SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPRTPL----- 247

Query: 242 HVNPREALIRFGNVPI-----KNIENAIISLNLSKTGKLKEA---------------AFN 281
                 AL+ FG +       +  E   +    S+ G   +A               A  
Sbjct: 248 ------ALLPFGALETLLAARQADERVALVARASRAGHWADAEGVHFIAAPEDPHVYARE 301

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
           L+  +++ D +  S I    +P+    IA+N+RL R
Sbjct: 302 LYGLLRVLDHANVSRILIEKLPDTIEWIAVNDRLGR 337


>gi|300310011|ref|YP_003774103.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1]
 gi|300072796|gb|ADJ62195.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 162/336 (48%), Gaps = 51/336 (15%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L+ G  +A PTETVYGL  D+ NP AI  +Y  K RPA +P+I HVS  + +   A
Sbjct: 19  AARTLERGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEADIGYWA 78

Query: 75  SVDPL-SLHLAKLFWPGPLTLVL-------DLLSTTD--------IHPLSTANLKTACFR 118
           +  P+ +  L   FWPGPLTL+L       D ++            HP++ A L+   FR
Sbjct: 79  ASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGVRCPAHPVAQALLRE--FR 136

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIG 175
              G            +A PSAN+ G +S T  +H+     S     +  ++DGG S++G
Sbjct: 137 GGKGG-----------IAGPSANKFGHVSPTTAEHVREEFGSDAGSLVDYVLDGGQSEVG 185

Query: 176 LESTIVN---VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
           +ESTIV+   +     V +LRPG +  E ++  + V L     + S P++ G L +HYAP
Sbjct: 186 IESTIVDLSRIDTHGPV-LLRPGQISAERIEAVLGVPL--ATPDASAPRASGTLDAHYAP 242

Query: 233 RSQVRLRAIHVNPRE---------ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
            + V    + V P E         AL +   +  +   + ++S+  +        A +L+
Sbjct: 243 HTPV----VQVAPEELATVLEKLAALGKKVALIARLQRSGLVSVTRAMPDTADAYAHDLY 298

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             ++  D +GA  I   ++P  G    +N+RL RAA
Sbjct: 299 AALRDMDHTGADLIVVEALPLSGQWQGVNDRLRRAA 334


>gi|17545296|ref|NP_518698.1| hypothetical protein RSc0577 [Ralstonia solanacearum GMI1000]
 gi|17427588|emb|CAD14107.1| probable translation factor, sua5 type protein [Ralstonia
           solanacearum GMI1000]
          Length = 336

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 161/325 (49%), Gaps = 26/325 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A   P ++L L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 76  YWADDVPGIALQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSVGLRCPSHPVAQALLS 133

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTIV++ + 
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIVDLSRL 191

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           ++ V   +LRPG +  E + R   V     + + + P++ G L++HYAPR+ + L A   
Sbjct: 192 DQGVGPVLLRPGAITPEDIGRVTGVM--PLLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249

Query: 244 NPREALIRFGNVPI-KNIENAIISLNL-------SKTGKLKEAAFNLFNYMKIADDSGAS 295
            P     R   +P  + I      ++L       +        A  L+  ++  D  G  
Sbjct: 250 VP----ARLAALPAGRRIVWVGAPVDLPPGCDQHAAPATPAAYANALYALLRELDRGGYH 305

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
           +I   ++P+     A+N+RL RAAA
Sbjct: 306 AIWVETLPDTSAWAAVNDRLRRAAA 330


>gi|32474396|ref|NP_867390.1| translation factor [Rhodopirellula baltica SH 1]
 gi|32444934|emb|CAD74936.1| putative translation factor [Rhodopirellula baltica SH 1]
          Length = 372

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 158/339 (46%), Gaps = 34/339 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++R A + L  G  I +PTETVYGLA     P ++ +++  K+RP+ NPLI HV D S V
Sbjct: 29  SIRLAGQALRDGRLIGLPTETVYGLAARGDQPDSVAKIFAAKQRPSTNPLILHVGDASAV 88

Query: 71  KKHASVDPL----SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
                +D          A   WPGPLTLVL    +  +    TA   T   RVP      
Sbjct: 89  HPLVVLDSAITRRRFEAASSLWPGPLTLVLP--KSEAVLDCVTAGGNTVAVRVPAHPVAL 146

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-Q 184
           +L+     P+A PSAN S  +S T  +H+ +  + + I  ++DGG+  +GLEST++++  
Sbjct: 147 QLLREVSLPIAAPSANVSNYVSPTRPEHV-TDGLAECIEWVLDGGVCDVGLESTVLSIAD 205

Query: 185 CEKKVRILRPGGLEIETLKRAI----------SVELEYCVDETSTPQSPGMLKSHYAPRS 234
                 ILR G L    L+             ++EL +   +     SPG+ + HY+PR+
Sbjct: 206 PNAPPTILREGVLSATKLESVFGEPVLSGSSSNIELPHPPSDAPA-ASPGLHRRHYSPRT 264

Query: 235 QVRL--RAIHVNPREALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKI 288
            +RL     H +P    +R   + ++   N++       +LS  G   E A  L+  ++ 
Sbjct: 265 PLRLVRETEHASPANNDLRVLRIRLRGPANSLPGYADVWSLSAVGDPLEIANRLYETLRR 324

Query: 289 ADDSGASSIAFSSI--------PNHGLGIAINNRLERAA 319
           AD      I    +         N  L  AI++RL RA+
Sbjct: 325 ADSGEFDQIEIDQMNVEDWIESGNANLIAAISDRLHRAS 363


>gi|300692406|ref|YP_003753401.1| hypothetical protein RPSI07_2776 [Ralstonia solanacearum PSI07]
 gi|299079466|emb|CBJ52141.1| conserved protein of unknown function, translation factor domain,
           SUA5 type [Ralstonia solanacearum PSI07]
          Length = 336

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 160/325 (49%), Gaps = 26/325 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYAMKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A   P ++L L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 76  YWADDVPGIALQLVEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 133

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTIV++ + 
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDTVFVLEGDGVDVGIESTIVDLSRL 191

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIH 242
           ++ +   +LRPG +  E ++R   V     + + + P++ G L++HYAPR+ +  L A  
Sbjct: 192 DEGIGPVLLRPGAITPEDIERVTGV--MPSLPDAAAPRASGTLRAHYAPRTPLYLLDAAD 249

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA-------DDSGAS 295
           V  R A +  G    + I      ++L      + A      Y           D  G  
Sbjct: 250 VPARLAALPAG----QRIAWVGAPVDLPSGCDQRAAPATPAAYANALYALLRDLDRCGYH 305

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
           +I   ++P+     A+N+RL RAAA
Sbjct: 306 AIWVETLPDTSAWAAVNDRLRRAAA 330


>gi|222112449|ref|YP_002554713.1| sua5/ycio/yrdc/ywlc family protein [Acidovorax ebreus TPSY]
 gi|221731893|gb|ACM34713.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax ebreus TPSY]
          Length = 332

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 171/337 (50%), Gaps = 45/337 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A + L  G  + +PTETVYGLA D+ N  A+ +++  K RPA +PLI HV+D + + 
Sbjct: 11  VQAAAQALARGELLGLPTETVYGLAADADNDAAVAQIFAAKGRPASHPLIVHVADAAAIT 70

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDI---------------HPLSTANLKTA 115
           ++A   PL +  L   FWPGPLTL+L  L+   +               HP++ A L+ A
Sbjct: 71  RYAKEVPLFAQQLIDAFWPGPLTLILPRLAHAAVASTGGQDSVGLRCPAHPVAHAVLQ-A 129

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
           C R         +E     +A PSAN  G++S T  +H+ +     ++ L++DGG   +G
Sbjct: 130 CQR---------LEPPVWGVAAPSANHFGRVSPTTAQHV-AEEFGDDL-LVLDGGACTVG 178

Query: 176 LESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAP 232
           +ESTI++  C + V + LRPG +  E ++RA   +     +E    TP++ G L +HYAP
Sbjct: 179 IESTIID--CTRGVPVLLRPGAISREDVQRACG-QRPLSKEELPALTPRASGTLLAHYAP 235

Query: 233 RSQVRL-------RAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
            ++VRL         + V   +A  +  +   P++   + I+   +         A  LF
Sbjct: 236 TARVRLMDAKQLQAGLDVLGADAAHIAVYARAPLRAASSKILVRRMPDDA--AATAQQLF 293

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D++G   I   + P+      + +RL+RAAA
Sbjct: 294 AALRGFDEAGVKLIWIETPPDAPAWEGVRDRLQRAAA 330


>gi|260655498|ref|ZP_05860986.1| Sua5/YciO/YrdC/YwlC protein [Jonquetella anthropi E3_33 E1]
 gi|260629946|gb|EEX48140.1| Sua5/YciO/YrdC/YwlC protein [Jonquetella anthropi E3_33 E1]
          Length = 319

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 120/233 (51%), Gaps = 8/233 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A + L  G  +A PTETVYGL  +  +  A +R+Y  K RP+ NPLI H    
Sbjct: 13  DRAVLNRAVKLLSDGRLVAFPTETVYGLGGNGWDSEAAKRIYAAKGRPSDNPLILHFPSP 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCGFT-K 125
             V+  A V   +  L   FWPGPLTLV   L    I PL+    L T   R+P   T +
Sbjct: 73  EAVELSADVSDRAKKLMARFWPGPLTLV---LPAKPIVPLAVRGGLDTVGCRMPSHPTAR 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+     PLA PSAN SG+ S T+   + +  +   + L+ID G   +GLEST++++  
Sbjct: 130 ALLSACPFPLAAPSANVSGRPSPTDAATV-AQDLNGRVDLVIDSGPCSVGLESTVLDITG 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +  V +LRPGG+ +E L+  +   + +        +SPG    HYAP   V L
Sbjct: 189 DAPV-LLRPGGVSLEELESVLG-PVAFPRGALELRRSPGTRYRHYAPAVAVLL 239


>gi|310790728|gb|EFQ26261.1| yrdC domain-containing protein [Glomerella graminicola M1.001]
          Length = 448

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 136/251 (54%), Gaps = 26/251 (10%)

Query: 12  LRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           LR A E++     P+A PTETVYGL  D+    A++ ++  K RP+ NPLI HV D+ M+
Sbjct: 42  LRDAAEYMRTQDTPVAFPTETVYGLGADATRSGAVKGIFSAKGRPSDNPLISHVCDLDML 101

Query: 71  KK-------------HASVDP---LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           +               A  DP   +   L + FWPGPLT++L     + + P  TA L++
Sbjct: 102 RGLLRPERQTMHGDVAAETDPIPEIYKPLIEKFWPGPLTILLRNPEPSKLAPEVTAGLES 161

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P       LI+    PLA PSAN S + S T  +H+    +   I LI+DGG  +
Sbjct: 162 FGVRMPSSPLALTLIKLAAAPLAAPSANASTKPSPTTAQHVY-HDLEGRIGLILDGGACQ 220

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETST----PQSPGMLK 227
           +G+EST+V+  C+  V +LRPGG+ +E L+     E  ++   D + T    P++PGM  
Sbjct: 221 VGVESTVVDGLCDPPV-VLRPGGVSMEELRSCAGWEGVVKAYKDASETGRSAPRAPGMKY 279

Query: 228 SHYAPRSQVRL 238
            HY+P+++V L
Sbjct: 280 KHYSPKAKVVL 290


>gi|221211360|ref|ZP_03584339.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD1]
 gi|221168721|gb|EEE01189.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD1]
          Length = 342

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 157/335 (46%), Gaps = 44/335 (13%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   LDAG  +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H+         A
Sbjct: 17  AAALLDAGQLVAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWA 76

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLI 128
           +  P     L   FWPGPLTL+L        HP      +    +   R P     + L+
Sbjct: 77  AELPADAQKLIDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALL 130

Query: 129 ETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             +     GH  +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI++
Sbjct: 131 AAFSARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +       +LRPG +  + +   +  +  L    D T+ P++ G LK+HYAPR+ + L  
Sbjct: 189 L-SRGFPALLRPGHVTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL- 245

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNY 285
               P +AL         + E   +    S+ G+  +A               A +L+  
Sbjct: 246 ----PFDALEPLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGM 301

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  D +  + I    +P     IA+N+RL RAAA
Sbjct: 302 LRALDRAQVARILVEKLPETVEWIAVNDRLGRAAA 336


>gi|229823148|ref|ZP_04449217.1| hypothetical protein GCWU000282_00445 [Catonella morbi ATCC 51271]
 gi|229787314|gb|EEP23428.1| hypothetical protein GCWU000282_00445 [Catonella morbi ATCC 51271]
          Length = 340

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 129/235 (54%), Gaps = 12/235 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +A PTETVYGL   +    A+ ++++ K RP+ NPLI HV D   V 
Sbjct: 11  LDEAAALLRRGELVAFPTETVYGLGAIATKEQAVAKVFQAKGRPSDNPLIVHVKDAQQVL 70

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCGFTK-KLI 128
            +A+  P L+  L + FWPGPLT++L +     + P +  N + T  FR+P   +  +LI
Sbjct: 71  DYAAEVPELAKELMERFWPGPLTIILPV--KPGVFPANVNNGQDTVAFRMPNQQSALRLI 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCE 186
           +  G PL  PSAN SG+ S T+V H++       I  ++ G    ++IG+EST+V    +
Sbjct: 129 DLVGTPLVGPSANLSGKPSPTSVDHVM-QDFDGLIAGVVAGDTDQAQIGVESTVVRPMAD 187

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDET-STP--QSPGMLKSHYAPRSQVRL 238
           + V ILRPG +    L +      E+ V E  + P  QSPG+   HY+P+ +V L
Sbjct: 188 RLV-ILRPGAITQSMLAQVCPNVQEFSVAEQLAAPHLQSPGVKYRHYSPKQEVYL 241


>gi|217076581|ref|YP_002334297.1| universally conserved protein [Thermosipho africanus TCF52B]
 gi|217036434|gb|ACJ74956.1| universally conserved protein [Thermosipho africanus TCF52B]
          Length = 337

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 161/329 (48%), Gaps = 35/329 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L + C  + +G  +A PTETVYGL   +    A+  ++++K R   NPLI HV     + 
Sbjct: 18  LIEVCNVIKSGGLVAFPTETVYGLGASAFEEKAVDNIFKVKGRAKDNPLIVHVDRFEKLL 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + A V            PGP+T VL      ++    TA LKT   R+P     +KL + 
Sbjct: 78  EIAEVAEKYFEAINKLTPGPVTFVLK--QKINLPKNVTAGLKTVGVRIPAHPVARKLCKC 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+A PSAN SG+ S T+ + ++     K I  IID G S+ GLESTI+++  E  + 
Sbjct: 136 AG-PIAAPSANLSGKPSPTDSQAVIEDLFGK-IDFIIDAGNSEFGLESTIIDLTSEIPI- 192

Query: 191 ILRPGGLEIETLKRAIS-VEL-EYCVDETST--PQSPGMLKSHYAPRSQV-RLRAIHVNP 245
           +LRPG + IE L+     VE+ ++ +D +S   P++PGM   HYAP   V R   +    
Sbjct: 193 VLRPGPITIEQLESIFGKVEIPQFVIDASSVENPKAPGMKYRHYAPEKPVYRFNKVQ--- 249

Query: 246 REALIRFGNVPIKNI-ENAII-----------SLNLSKTGKLKEA---AFNLFNYMKIAD 290
           RE +I+      K + EN +               +   GKL E    A NLF  ++  D
Sbjct: 250 REKVIK------KALSENGVFICPEEHKKFYPDDRIMILGKLSEPYSIAQNLFKVLREFD 303

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319
            S  +     +    G+ +++ NRL++A+
Sbjct: 304 RSNFNVAFIEAFEEKGILLSVMNRLKKAS 332


>gi|322500549|emb|CBZ35626.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 386

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/366 (30%), Positives = 168/366 (45%), Gaps = 57/366 (15%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    LR+A + L  G  +AIPTETVYGL  ++   +A++ +Y +K RP  +PLICHV  
Sbjct: 7   TSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPLICHVYT 66

Query: 67  ISMVKK-------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           +   +K         +V+ L+  +    WPGPLT+V     T  +    T        R+
Sbjct: 67  LDGARKLWDLKWDEGAVE-LACTIGAALWPGPLTIVCKASPT--LPDCVTGGSGYVGARI 123

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLE 177
           P    T KL+E    P+A PSAN  G +S T  +H+      ++   LIIDGG S IG+E
Sbjct: 124 PNNPITLKLLEMADVPVAAPSANTFGHVSPTTAQHVYDDLAARDPELLIIDGGQSAIGIE 183

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-------VEL---EYCVDETSTPQ-SPGML 226
           ST+  V+    V +LR G + +  + RAI+       VE+       D    P  SPG L
Sbjct: 184 STVAKVEANDLVVVLRRGCITVSMIHRAIADRYPQTRVEIRDTRIMCDPAKAPMVSPGQL 243

Query: 227 KSHYAPRSQVRLRAIHVNPREALIRFGNVPI-----KNI----ENAIISLN--------- 268
            +HY+P     L  +      AL    +VP+     K++    E  ++  N         
Sbjct: 244 LTHYSPHVPSSL--LTPGSLAALTASADVPVYVHRGKDVVPLCETVVLDFNGYLSRFRDT 301

Query: 269 ------LSKTGKLKEAAFNLFNYMKIADD-SGASSIAF---SSIPN----HGLGIAINNR 314
                 +S  G  +E  + +F+ ++  +   GA  + F   S  P+      L  A+ +R
Sbjct: 302 CLFYHDMSPDGNPEEGCYAVFDALRATETIKGAKGLVFPLISEWPHDKAKEDLLTAMEDR 361

Query: 315 LERAAA 320
           L RAA+
Sbjct: 362 LFRAAS 367


>gi|253744903|gb|EET01038.1| SUA5 protein [Giardia intestinalis ATCC 50581]
          Length = 370

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 171/365 (46%), Gaps = 54/365 (14%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  + L +A   +  G  +AIPTETVYGLA D+ + TA  +++ +K+RPA +PLI H+S 
Sbjct: 8   TTQSELIEAAGAIQCGELVAIPTETVYGLAADALSNTACAKIFALKRRPANDPLIVHISS 67

Query: 67  ISMVKKHA--SVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           +S +   A  SVD  P+   LA  FWPGPLT+VL   +   +    TA  +T   R+P  
Sbjct: 68  VSQLSMVAVLSVDLSPIVDILATAFWPGPLTMVLP--AAPCVPSTVTAGSQTIGVRMPRH 125

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + +IE    PLA PSAN  G IS T  + + +  I  ++ LIIDGG   +G+EST++
Sbjct: 126 SVARTIIELAARPLAAPSANMFGSISPTRAEDVATEFIESDL-LIIDGGPCNVGIESTVL 184

Query: 182 NVQCEKKVRILRPGG-----LEIETLKRAIS-VELEYCVDETSTPQ------SPGMLKSH 229
            +  E  + ILR G      LE   ++ A+S V +E      S+ Q      SPG    H
Sbjct: 185 LI-AEBCLTILRRGQVTEQMLEAVLMENALSHVRIEARALSMSSIQANEVVPSPGQFLRH 243

Query: 230 YAPRS--------------------QVRLRAI-----------HVNPREALIRFGNVPIK 258
           Y+P++                      RL               + P     R  ++  +
Sbjct: 244 YSPQTPCYLVMKGGPALPGAVRTTLPARLNGFVMVLDCNPALAELGPDAIFTRLADILPE 303

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA-FSSIPNHGLGIAINNRLER 317
             E A + L +     L+  A  LF  ++  D  G + I      P  GL  A+ +RL R
Sbjct: 304 GTEPAQL-LRVYSAPTLEAVAQGLFGALRQVDRLGPACILILPPEPVRGLAGALLDRLFR 362

Query: 318 AAAPR 322
           AA+ R
Sbjct: 363 AASGR 367


>gi|121596222|ref|YP_988118.1| translation factor SUA5 [Acidovorax sp. JS42]
 gi|120608302|gb|ABM44042.1| translation factor SUA5 [Acidovorax sp. JS42]
          Length = 332

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 170/337 (50%), Gaps = 45/337 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A + L  G  + +PTETVYGLA D+ N  A+ +++  K RPA +PLI HV+D + + 
Sbjct: 11  VQAAAQALARGELLGLPTETVYGLAADADNDAAVAQIFAAKGRPASHPLIVHVADAAAIT 70

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDI---------------HPLSTANLKTA 115
           ++A   PL +  L   FWPGPLTL+L  L    +               HP++ A L+ A
Sbjct: 71  RYAKEVPLFAQQLIDAFWPGPLTLILPRLPHAAVASTGGQDSVGLRCPAHPVAHAVLQ-A 129

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
           C R         +E     +A PSAN  G++S T  +H+ +     ++ L++DGG   +G
Sbjct: 130 CQR---------LEPPVWGVAAPSANHFGRVSPTTAQHV-AEEFGDDL-LVLDGGACTVG 178

Query: 176 LESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAP 232
           +ESTI++  C + V + LRPG +  E ++RA   +     +E    TP++ G L +HYAP
Sbjct: 179 IESTIID--CTRGVPVLLRPGAISREDVQRACG-QRPLSKEELPALTPRASGTLLAHYAP 235

Query: 233 RSQVRL-------RAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
            ++VRL         + V   +A  +  +   P++   + I+   +         A  LF
Sbjct: 236 TARVRLMDAKQLQAGLDVLGADAAHIAVYARAPLRAASSKILVRRMPDDA--AATAQQLF 293

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D++G   I   + P+      + +RL+RAAA
Sbjct: 294 AALRGFDEAGVKLIWIETPPDAPAWEGVRDRLQRAAA 330


>gi|116328292|ref|YP_798012.1| Sua5 family translation factor [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331018|ref|YP_800736.1| Sua5 family translation factor [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121036|gb|ABJ79079.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124707|gb|ABJ75978.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 314

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 164/323 (50%), Gaps = 27/323 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS    +A + L  G  +  PTETVYG+   + +  A +++YE+K RP  NPLI HV 
Sbjct: 10  ITDSPL--EAAKILLEGGNVVFPTETVYGIGASAFDFKACKKIYEVKNRPFDNPLILHVE 67

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           ++S +K + ++   +  + + F PGP+T +     T     L TA L T   R+P   T 
Sbjct: 68  NLSSLKTYGNISEKAGLVFQNFSPGPITGIF----TKKNQDLFTAGLNTVALRIPSNPTT 123

Query: 126 KL-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +L +   G P+A PSAN SG+ S+T +++IL       +  I+ G   KIG+EST+++  
Sbjct: 124 QLFLNLCGVPVAAPSANLSGKPSLTKIEYIL-EEFSGRVDCILKGEEPKIGIESTVIDFS 182

Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV----RL 238
            E  V +LRPG ++   L + +     +E   +    P+SPG+   HYAP  +V     L
Sbjct: 183 SEPPV-LLRPGFVDRNDLLKILPDLKGIESFNELNKIPRSPGLKYRHYAPACKVVLKDSL 241

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
           + I  N  +    F +  +  I   ++S N       +E   +++++    D  G    A
Sbjct: 242 KGISGNFAQIGFHFESESMFQI---LVSSN-------EEYMKSIYSFFVECDRKGIKE-A 290

Query: 299 FSSIPNHGLGI-AINNRLERAAA 320
           +  IP  G G  A+ NR+ +AA+
Sbjct: 291 WCEIPKDGNGKEALINRISKAAS 313


>gi|327348880|gb|EGE77737.1| SUA5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 490

 Score =  122 bits (307), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 36/265 (13%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKK-------------------------HASVDPLSLH-LAKLFWPGPLTLVLDLLS 100
              +++                           ++ PL    L   FWPGPLT++L   +
Sbjct: 117 REQLQRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 177 PSPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVY-TDL 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213
              I +I+DGG S +G+EST+V+        +LRPGG+ IE ++     E       +  
Sbjct: 236 QGRIDMILDGGPSGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEEVRIGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238
           +     P++PGM   HY+P+++V L
Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVL 319


>gi|261195106|ref|XP_002623957.1| SUA5 [Ajellomyces dermatitidis SLH14081]
 gi|239587829|gb|EEQ70472.1| SUA5 [Ajellomyces dermatitidis SLH14081]
          Length = 490

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 36/265 (13%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKK-------------------------HASVDPLSLH-LAKLFWPGPLTLVLDLLS 100
              +++                           ++ PL    L   FWPGPLT++L   +
Sbjct: 117 REQLQRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 177 PSPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVY-TDL 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213
              I +I+DGG S +G+EST+V+        +LRPGG+ IE ++     E       +  
Sbjct: 236 QGRIDMILDGGPSGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEEVRIGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238
           +     P++PGM   HY+P+++V L
Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVL 319


>gi|228474930|ref|ZP_04059659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis SK119]
 gi|228271162|gb|EEK12542.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis SK119]
          Length = 346

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 159/329 (48%), Gaps = 21/329 (6%)

Query: 8   DSNALRKACE----FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           DS    +  E    + + GL IAIPTETVYGL  +++N  A+  +Y+ K RP+ NPLI H
Sbjct: 14  DSQMFSQLAEIKTIYENGGL-IAIPTETVYGLGANAKNEQAVENIYKAKGRPSDNPLIVH 72

Query: 64  VSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   S +    S  P  +  L   FWPGP++ +L L        + T  L +   R+P  
Sbjct: 73  IYKQSQMDAFVSTIPKEVKKLMNAFWPGPISFILPLKQGYLCEKV-TGGLNSIAVRMPSH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + ++E    P+A PSAN SG+ S T  +H+  + +  +I  I++G  S+ GLEST++
Sbjct: 132 PIGRAILEYVDLPIAAPSANISGRTSPTTFQHVY-NDLNGKIDGIVNGDQSEEGLESTVL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +   +   RI RPG +    L   +  SV ++Y  ++   P +PGM   HYAP++ V + 
Sbjct: 191 DC-TQFPFRIARPGSITQTMLNHVVPHSV-IQYDYNQLERPIAPGMKYKHYAPKTPVYML 248

Query: 240 AIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292
                P   L   G   +      K +    I ++L +  + +K A  NL+  +   DD 
Sbjct: 249 TEFTQPISELNESGLAFVLPSSMKKYVPKDCIFISLCENQRDVKGANHNLYKILHDIDDD 308

Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320
                AF  +  N     A+ NR+ +A  
Sbjct: 309 ERIQKAFIYTFDNIEGSEAVMNRMMKATG 337


>gi|89899013|ref|YP_521484.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118]
 gi|89343750|gb|ABD67953.1| translation factor SUA5 [Rhodoferax ferrireducens T118]
          Length = 389

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 127/249 (51%), Gaps = 34/249 (13%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-L 79
           AG  + +PTETVYGLA D+ N TA+ +++  K RPA +PLI HV D   V   A+  P  
Sbjct: 20  AGGLLGLPTETVYGLAADAENDTAVAQIFTAKGRPADHPLIVHVRDAVCVGHFAAQVPDF 79

Query: 80  SLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH--- 133
           +  L + FWPGPLTL+L     +++       T  L+     V     + L++  G    
Sbjct: 80  ADRLMQAFWPGPLTLILPRRPGVASAAAGGQDTIGLRCPSHPVAQMLLQALLQNGGQNPT 139

Query: 134 --------------------PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
                                +A PSAN+ G++S T   H+  S    ++ LI+DGG   
Sbjct: 140 HSESAKPQAKELASQPHGVWGIAAPSANQFGRVSPTTAAHV-QSEFGPDL-LILDGGACT 197

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSH 229
           +G+ESTI++    + V +LRPG +  E ++ A  +++    E   D    P++ G L+SH
Sbjct: 198 VGIESTIIDCTRGQPV-LLRPGAITREQVQAACGLKVLLKDELATDAAPAPKASGTLESH 256

Query: 230 YAPRSQVRL 238
           YAP++ VRL
Sbjct: 257 YAPKATVRL 265


>gi|78189525|ref|YP_379863.1| Sua5/YciO/YrdC/YwlC [Chlorobium chlorochromatii CaD3]
 gi|78171724|gb|ABB28820.1| translation factor SUA5 [Chlorobium chlorochromatii CaD3]
          Length = 324

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 156/323 (48%), Gaps = 21/323 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TDS A  +A   L+ G  +A PTETVYGL     +  A+++++  K RP+ NPLI H++
Sbjct: 13  LTDSPA--EAAALLNGGKIVAFPTETVYGLGATINHSEALKQIFVAKGRPSDNPLILHIA 70

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               + K A+  P  +    + F+PGPLTLVL       +  L TA L++   R P    
Sbjct: 71  HPDNIGKVAATVPRYAERFIEKFFPGPLTLVLP--KQPQVPELVTAGLQSVGVRCPAHPM 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + L+     P+A PSANRSG+ S T+ + +    +   I  ++      IGLESTIV+ 
Sbjct: 129 AQALLALVNSPVAAPSANRSGKPSATSWETVY-DDLNGRIDGLLRSAPCTIGLESTIVDC 187

Query: 184 QCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
                + +LR G + +E L+  + S+ +         P+SPG+   HYAP + + L A+ 
Sbjct: 188 TANTPL-LLRAGAITLEQLQAVVPSLRVNQPTHNNEPPKSPGLKYPHYAPHATIELLAVG 246

Query: 243 -----VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
                + P  A I  G  P  N    ++     +   ++     LF + +  D     +I
Sbjct: 247 AVPLTLPPNSAYI--GIAPPPNGATLVM-----QCASIEAYGNALFQFFRTCDAHAIRTI 299

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                 + GLG AI +RL RAA 
Sbjct: 300 YCELPTSDGLGRAIGDRLLRAAG 322


>gi|260891996|ref|YP_003238093.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4]
 gi|260864137|gb|ACX51243.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4]
          Length = 338

 Score =  122 bits (306), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 5/184 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S AL +A E L  G  +A PTETVYGL   +    A+RR++ +K RPA  PL  H++D 
Sbjct: 14  ESLALEEAGELLRRGELVAFPTETVYGLGAAATQDEALRRVFAVKGRPARKPLTLHLADP 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
             V ++    P  +  L   FWPGPLTL+L   + + + P  TA  +T   RVP     +
Sbjct: 74  EEVFRYVKEVPSTARRLISSFWPGPLTLILP--AASGLPPSLTAGGETVGIRVPDHAVAQ 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G PLA PSAN SG+ + T   H+L + +  +I  ++DGG + +G+EST+V V+ 
Sbjct: 132 ELIRMAGLPLAAPSANLSGRPAPTKAAHVL-AELGGKIAGVLDGGPTPLGIESTVVEVRG 190

Query: 186 EKKV 189
           E+ V
Sbjct: 191 EELV 194


>gi|186475233|ref|YP_001856703.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815]
 gi|184191692|gb|ACC69657.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815]
          Length = 347

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 159/344 (46%), Gaps = 43/344 (12%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            + S   ++ +  A   LDAG  +A PTETVYGL  D+ +P AI R+Y  K RP+ +P+I
Sbjct: 9   DVASSVGADEIAHAAAMLDAGQLVAFPTETVYGLGGDAESPDAIARIYAAKGRPSNHPVI 68

Query: 62  CHVS---DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            H++   D +        D  +  L   FWPGPLTL+L       I    +    +   R
Sbjct: 69  VHLAPNGDPNYWVAQLPSD--AQRLIDAFWPGPLTLILK--RAAHIPAAVSGGQDSVGLR 124

Query: 119 VPCG-FTKKLIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            P     + L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG 
Sbjct: 125 CPSHPVAQSLLTAFSALRNGHGGVAAPSANRFGHVSPTTAQHVREE--FGDAIHVLDGGP 182

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSH 229
           S +G+ESTIV++       +LRPG +  + +   +  E+    D  + S P++ G LK+H
Sbjct: 183 SDVGIESTIVDL-SRGFPALLRPGHVTPQDIADVLG-EMPRLPDGSDASAPRASGTLKAH 240

Query: 230 YAPRSQVRLRAIHV-NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------- 278
           YAPR+ + L    V  P  A    G       E   +    S+ G+  EA          
Sbjct: 241 YAPRTPLALLPFDVLEPLLAARAPG-------ERVALVARASRAGRWAEAQGVHFVAAPE 293

Query: 279 -----AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                A +L+  ++  D +  S I    +P+    IA+N+RL R
Sbjct: 294 DPHLYARDLYGLLRALDRANVSRILIEKLPDTIEWIAVNDRLGR 337


>gi|332525423|ref|ZP_08401583.1| Sua5/YciO/YrdC/YwlC family protein [Rubrivivax benzoatilyticus JA2]
 gi|332108692|gb|EGJ09916.1| Sua5/YciO/YrdC/YwlC family protein [Rubrivivax benzoatilyticus JA2]
          Length = 323

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 122/242 (50%), Gaps = 9/242 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+  T   ++  A E L  G  +A PTETVYGL   +    A   ++ +K RP  +PL
Sbjct: 1   MPILDGTKPASITSAAERLRDGGLVAFPTETVYGLGARADRDVATAAVFAVKGRPDDHPL 60

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTAC 116
           I HV+D + V + A    P++  L   FWPGPLTL+L   +           T  L+   
Sbjct: 61  IVHVADAAAVTEFAEPPGPVAQALMARFWPGPLTLILRRREGRGEAAAGGQDTIGLRLPS 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
             V     ++        +A PSANR G++S T   H++      +  LI+DGG  ++G+
Sbjct: 121 HPVALALLREAARLGVPGVAAPSANRFGRVSPTTAAHVVGE--FGDGLLIVDGGACEVGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ES IV+   E+   +LRPG L+   ++  I   L        +P++ G L+SHYAP +++
Sbjct: 179 ESAIVDCSGERPA-LLRPGALDRREIEAVIGAPLAAA--GADSPRASGTLESHYAPAARI 235

Query: 237 RL 238
           RL
Sbjct: 236 RL 237


>gi|239610683|gb|EEQ87670.1| SUA5 [Ajellomyces dermatitidis ER-3]
          Length = 489

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 133/264 (50%), Gaps = 35/264 (13%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVK------------------------KHASVDPLSLH-LAKLFWPGPLTLVLDLLST 101
              ++                           ++ PL    L   FWPGPLT++L   + 
Sbjct: 117 REQLRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPTP 176

Query: 102 TDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160
           + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+  + + 
Sbjct: 177 SPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVY-TDLQ 235

Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCV 214
             I +I+DGG S +G+EST+V+        +LRPGG+ IE ++     E       +  +
Sbjct: 236 GRIDMILDGGPSGVGVESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEEVRIGYKDGAL 294

Query: 215 DETSTPQSPGMLKSHYAPRSQVRL 238
                P++PGM   HY+P+++V L
Sbjct: 295 QGKEVPRAPGMKYKHYSPKAKVVL 318


>gi|320107104|ref|YP_004182694.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
 gi|319925625|gb|ADV82700.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
          Length = 340

 Score =  122 bits (305), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 163/337 (48%), Gaps = 44/337 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +A PTETVYGL  ++ +  A+ +++  K+RP  +PLI H+S + ++ 
Sbjct: 16  LDRAATILREGGTVAFPTETVYGLGANALDAAAVEKIFAAKQRPHWDPLIVHLSSLEILS 75

Query: 72  K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128
              +S+   +  L + FWPGPLTL   LL+     PL+ TA  +    R+P       LI
Sbjct: 76  AIVSSISARARLLMEAFWPGPLTL---LLARNPALPLAVTAGRELVGVRMPAHPMALDLI 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A PSAN  G +S T+  H+L   +   I  I+DGG + +G+EST+++      
Sbjct: 133 RRAGVPVAAPSANLFGHVSPTSAAHVL-EDLDGAIDAIVDGGSTSVGVESTVLDPNTSPM 191

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDET-------STPQSPGMLKSHYAPRSQVRLRAI 241
           + + RPG + +E +       + Y   +T       S P SPG+   HYAPR++V L   
Sbjct: 192 M-LYRPGAITLEQIVAVAGPTVRYQPVDTLDGAKHESLP-SPGIGIRHYAPRARVVL--- 246

Query: 242 HVNPREALIRF----------------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
            V   + L R                   +P ++IE A+I  + + T  L   A  LF  
Sbjct: 247 -VQDEDELHRIFQQMKTERVGVLLPTEWKIPSQSIE-AVIWGSWNDTTAL---AHTLFEG 301

Query: 286 MKIADDSGASSIAFSSIPNHG---LGIAINNRLERAA 319
           ++  D  G   I    +P  G   L  AI +RL +AA
Sbjct: 302 LRTLDTRGV-EIILCPLPREGSGPLAEAIRDRLMKAA 337


>gi|196232003|ref|ZP_03130859.1| Sua5/YciO/YrdC/YwlC family protein [Chthoniobacter flavus Ellin428]
 gi|196224125|gb|EDY18639.1| Sua5/YciO/YrdC/YwlC family protein [Chthoniobacter flavus Ellin428]
          Length = 203

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 98/168 (58%), Gaps = 10/168 (5%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G P+ +PTETVYGLA D+  P A+  ++E K+RP  +PLI H+     + +  ++   S 
Sbjct: 28  GQPVGLPTETVYGLAADALRPEAVAEVFEAKERPFFDPLIVHLPSRDWLDRVTNIPAESR 87

Query: 82  HLAKL----FWPGPLTLVLD-LLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
            + +     FWPGPLTLVL   L   DI    T+ L T   R+      + ++E YGHPL
Sbjct: 88  AMVEALITKFWPGPLTLVLPRQLVVPDI---VTSGLDTVAVRMSAHPVFRAVVEHYGHPL 144

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           A PSANR G IS T   H+  S +   IPLI+DGG ++ G+ESTIV V
Sbjct: 145 AAPSANRFGHISPTTASHV-RSELHGRIPLIVDGGPTQHGVESTIVKV 191


>gi|319764783|ref|YP_004128720.1| sua5/ycio/yrdc/ywlc family protein [Alicycliphilus denitrificans
           BC]
 gi|317119344|gb|ADV01833.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           BC]
          Length = 332

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 171/339 (50%), Gaps = 31/339 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T  ++++ A   L  G  + +PTETVYGLA D+ N  A+ R++  K RPA +PLI 
Sbjct: 2   ILDGTLPSSVQAAARLLARGELLGLPTETVYGLAADADNDAAVARIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + +  +A   PL +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADSTAITHYAKEVPLFAQQLIDAFWPGPLTLILPRLPAAAR--ASTGGQDSVGLRCPA 119

Query: 122 GFTKKLI---------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 +           +G  +A PSAN  G++S T  +H+ + +   E+ L++DGG  
Sbjct: 120 HPVAHAVLAACQRLDPPVWG--VAAPSANHFGKVSPTTAQHV-ADAFGDEL-LVLDGGAC 175

Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHY 230
            +G+ESTI++  C + V + LRPG +    ++RA  +  L      T TP++ G L +HY
Sbjct: 176 AVGIESTIID--CTRGVPVLLRPGAISRADVQRACGLRPLSKEELPTHTPRASGTLLAHY 233

Query: 231 APRSQVRL-------RAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           AP ++VRL         + V   +A  L  +   P+++  + II   +        AA  
Sbjct: 234 APTARVRLMDARQLQAGLDVLGADAAHLAVYARAPLRSASSRIILRRMPD--DAAAAAQQ 291

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           LF  ++  DD+GA  I   + P+      + +RL+RAAA
Sbjct: 292 LFAALRGFDDAGARLIWIETPPDTPDWEGVRDRLQRAAA 330


>gi|167822943|ref|ZP_02454414.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 9]
          Length = 260

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 11  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 71  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 128

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 186

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 187 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 244

Query: 239 RAI 241
            A 
Sbjct: 245 AAF 247


>gi|167901498|ref|ZP_02488703.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 255

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243

Query: 239 RAI 241
            A 
Sbjct: 244 AAF 246


>gi|113866600|ref|YP_725089.1| putative translation factor (SUA5) [Ralstonia eutropha H16]
 gi|113525376|emb|CAJ91721.1| putative translation factor (SUA5) [Ralstonia eutropha H16]
          Length = 325

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 26/325 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP A+ R++ +K RP+ +P+I HV D + + 
Sbjct: 7   LDEAVRLLEAGQLVAFPTETVYGLGADAENPEAVARIFALKGRPSNHPVIVHVVDGADIG 66

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P  +  L   FWPGPLTL+L       IHP       +   R P     + L+ 
Sbjct: 67  YWTDEVPEAAQQLIDAFWPGPLTLILK--RAAHIHPAVAGGQDSIGVRCPSHPVAQALLA 124

Query: 130 TYGH---PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       +   +++G   ++G+ESTIV++ + 
Sbjct: 125 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVYVLEGDGVEVGIESTIVDLSRL 182

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS-------QV 236
           ++ +   +LRPG +    + + +               + G LK+HYAP +       Q 
Sbjct: 183 DQGIGPVLLRPGAITAAMMAQVLGAAPLPPDAAAPR--ASGTLKAHYAPHTPLLLADAQA 240

Query: 237 RLRAIHVNPREALIRF-GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
               +   P +A + + G  P+ +     +          +E    L+  ++  D  G +
Sbjct: 241 ASAQLASLPDDARVAWVGRAPLVDQRCTWVQAPADAAAYARE----LYRLLRKLDKQGYT 296

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            + F  +P       + +RLERAAA
Sbjct: 297 QLMFEVLPEGQDWAGVRDRLERAAA 321


>gi|167893038|ref|ZP_02480440.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894]
          Length = 257

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243

Query: 239 RAI 241
            A 
Sbjct: 244 AAF 246


>gi|46445827|ref|YP_007192.1| hypothetical protein pc0193 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399468|emb|CAF22917.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 311

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 159/318 (50%), Gaps = 23/318 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-ISMV 70
           + +A E L A   +A+PTETVYGLA     P AI++++EIK R  +NPLI HV++ I + 
Sbjct: 5   VEEAIEKLLANQLVAMPTETVYGLAARLTCPGAIKKIFEIKGRSLVNPLIIHVANPIDVC 64

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLV----LDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
               ++ P    L   FWPGPLTL+    LDL+ +     +  A L TA FR+P    T 
Sbjct: 65  AYAIALPPHFDALTHAFWPGPLTLIVPIQLDLVDS-----IVRAGLPTAAFRMPSHPLTL 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            +I   G PL +PSAN SG+ S T+VKH+       + P ++DGG  + G+ESTI++ + 
Sbjct: 120 HVIRAVG-PLVMPSANLSGKPSSTDVKHV-EMDFGLDFP-VLDGGPCQEGVESTILHYR- 175

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL-RAIHV 243
             +  I R G L     +  +  E  Y  + +     SPG +  HYAP++ + L     +
Sbjct: 176 NSQWEIARLGALSATVFQPILGYEPIYQKIVKNDQIISPGQMFRHYAPQATLFLGDQKQI 235

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI- 302
              + ++ F     K+       L L       E A NL+  ++  D   A  IA+  + 
Sbjct: 236 TEADFIVGFTE---KSYPVEKRVLYLGSLSNPHEVAENLYAVLRQLDFEKA-KIAWVDMD 291

Query: 303 -PNHGLGIAINNRLERAA 319
            P+ GL   I  RL RA 
Sbjct: 292 FPSEGLWKTIAERLSRAG 309


>gi|167909744|ref|ZP_02496835.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112]
          Length = 252

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 11  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 71  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 128

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 186

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 187 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 244

Query: 239 RAI 241
            A 
Sbjct: 245 AAF 247


>gi|73540259|ref|YP_294779.1| translation factor SUA5 [Ralstonia eutropha JMP134]
 gi|72117672|gb|AAZ59935.1| translation factor SUA5 [Ralstonia eutropha JMP134]
          Length = 328

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 158/327 (48%), Gaps = 30/327 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ +P A+ R++ +K RP+ +P+I HV D + + 
Sbjct: 10  LDEAVRLLEAGQLVAFPTETVYGLGADAESPEAVARIFALKGRPSNHPVIVHVVDGADIG 69

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P  +  L + FWPGPLTL+L     + IH        +   R P     + L+ 
Sbjct: 70  YWVDEVPEAATKLIEAFWPGPLTLILK--RASHIHAAVAGGQDSIGLRCPSHPVAQALLS 127

Query: 130 TYGH---PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       +   +++G   ++G+ESTIV++ + 
Sbjct: 128 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVYVLEGDGVEVGIESTIVDLSRL 185

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS--------- 234
           ++ +   +LRPG +    + + +  E     D  +   S G LK+HYAP +         
Sbjct: 186 DQGIGPVLLRPGAITPAMMAKVLG-EAPLPPDAAAPRAS-GTLKAHYAPHTPLVLADAAE 243

Query: 235 -QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
              +L ++  + R A +  G  PI++     +      T   +E    L+  ++  D  G
Sbjct: 244 LAAQLPSLAADARVAWV--GRAPIEDPRCTWVQAPADATAYARE----LYRLLRKLDKQG 297

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
            + + F  +P       + +RL+RAAA
Sbjct: 298 FTQLVFEPLPEGHEWAGVRDRLQRAAA 324


>gi|187477397|ref|YP_785421.1| hypothetical protein BAV0893 [Bordetella avium 197N]
 gi|115421983|emb|CAJ48504.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 341

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 167/344 (48%), Gaps = 47/344 (13%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++D+     A   L+ GL +A PTETVYGL  D+ N  A+  +Y  K RPA +P+I H++
Sbjct: 1   MSDAQIQAAARRLLEGGL-VAFPTETVYGLGADAENAQAVAGIYAAKGRPANHPVIVHIA 59

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVL-------DLLSTTD--------IHPLST 109
                   AS V P +  L + FWPGPLTL+L       + +S            HP++ 
Sbjct: 60  PQGDPGYWASEVPPEASKLIEAFWPGPLTLILKRRPGMGEAVSGGQDSIGIRCPSHPVAQ 119

Query: 110 ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS---SICKEIPLI 166
           A L     + P G            +A PSAN  G +S T   H+ S     +   +P +
Sbjct: 120 ALLAAFAAQKPGGQGG---------VAAPSANTFGHVSPTLAAHVRSEFPREVAAGMP-V 169

Query: 167 IDGGISKIGLESTIVNV----QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
           +DGG S++G+ESTI+++    Q    V +LRPG +  E + + + V +     + + P++
Sbjct: 170 LDGGASEVGIESTILDLSRLDQGMGPV-LLRPGHISAEQIAQVLGVAVRRP--DAAAPRA 226

Query: 223 PGMLKSHYAPRSQVRL--RAIH----VNPREALIRFGNVPIKNIENAIISLNLSKTGKLK 276
            G LK+HYAPR+ + L  RA      ++ R AL+ + + P +  +  I     +   +  
Sbjct: 227 SGTLKAHYAPRTPLELVDRASRPLGKIHGRIALVAY-SWPPQEGDGLIWHRVPADPARYA 285

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +A   L+  ++  D  G   I   + P      A+N+R+ RAAA
Sbjct: 286 QA---LYATLRELDAQGYERIWVEAPPTDAAWDAVNDRIGRAAA 326


>gi|323304969|gb|EGA58723.1| Sua5p [Saccharomyces cerevisiae FostersB]
          Length = 337

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 138/265 (52%), Gaps = 29/265 (10%)

Query: 5   SITD---SNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   + D    +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 33  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92

Query: 61  ICHVSDISMVKK------HASVDPLSLHLAKLF-------WPGPLTLVLDLLST--TDIH 105
           I HVS I  + +      H S   L  ++  ++       WPGPLT++L + S+  + + 
Sbjct: 93  ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIH 242
              ++PGM   HY+P ++V L   H
Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPH 295


>gi|167917766|ref|ZP_02504857.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           BCC215]
          Length = 263

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 16/243 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243

Query: 239 RAI 241
            A 
Sbjct: 244 AAF 246


>gi|167814478|ref|ZP_02446158.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91]
          Length = 245

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 124/242 (51%), Gaps = 16/242 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++       +LRPG +    +   + V   L    D T+ P++ G LK+HYAPR+ + L
Sbjct: 186 LDL-SRGFPALLRPGHVSPRQIADVLGVAPRLPDGSDATA-PRASGTLKAHYAPRTPLAL 243

Query: 239 RA 240
            A
Sbjct: 244 AA 245


>gi|223043990|ref|ZP_03614031.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus capitis SK14]
 gi|222442705|gb|EEE48809.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus capitis SK14]
          Length = 347

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 11/222 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L+ GL +AIPTETVYGL  ++RN  A+R++YE K RP+ NPLI H+     +++   VD
Sbjct: 28  LLNGGL-VAIPTETVYGLGANARNEHAVRKIYEAKGRPSDNPLIVHIHQREQLEEF--VD 84

Query: 78  PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
            +   ++KL   FWPGP++ +L  L T  +    T  L +   R+P     + L++    
Sbjct: 85  GIDERVSKLMDAFWPGPISFILP-LKTGYLCEKVTGGLNSIAVRMPSHKIGRALLQYIDE 143

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSAN SG+ S T   H+    +  ++  I++G  S+ GLEST+++   +   RI R
Sbjct: 144 PIAAPSANLSGRPSPTKFDHVF-QDLNGKVDGIVNGDQSEEGLESTVLDC-TQYPFRIAR 201

Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           PG +    +++ +   ++     E   P +PGM   HY+P +
Sbjct: 202 PGSITTSMIEQVLPGSIQKANYFEKDKPIAPGMKYKHYSPDT 243


>gi|314934185|ref|ZP_07841546.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus caprae C87]
 gi|313653090|gb|EFS16851.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus caprae C87]
          Length = 347

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 11/222 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L+ GL +AIPTETVYGL  ++RN  A+R++YE K RP+ NPLI H+     +++   VD
Sbjct: 28  LLNGGL-VAIPTETVYGLGANARNEHAVRKIYEAKGRPSDNPLIVHIHQREQLEEF--VD 84

Query: 78  PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
            +   ++KL   FWPGP++ +L  L T  +    T  L +   R+P     + L++    
Sbjct: 85  GIDERVSKLMDAFWPGPISFILP-LKTGYLCEKVTGGLNSIAVRMPSHKIGRALLQYIDE 143

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSAN SG+ S T   H+    +  ++  I++G  S+ GLEST+++   +   RI R
Sbjct: 144 PIAAPSANLSGRPSPTKFDHVF-QDLNGKVDGIVNGDQSEEGLESTVLDC-TQYPFRIAR 201

Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           PG +    +++ +   ++     E   P +PGM   HY+P +
Sbjct: 202 PGSITTSMIEQVLPGSIQKANYFEKDKPIAPGMKYKHYSPDT 243


>gi|121606749|ref|YP_984078.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595718|gb|ABM39157.1| translation factor SUA5 [Polaromonas naphthalenivorans CJ2]
          Length = 327

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 158/328 (48%), Gaps = 21/328 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD  A+ +A   + AG  +  PTETVYGL  D+ +  A+  +++ K RPA +PLI HV+D
Sbjct: 6   TDPQAIVEAARRIQAGALVGFPTETVYGLGADASSDAAVAGIFKAKGRPADHPLIVHVAD 65

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            S V  +AS  P  +  L + FWPGPLT++L       +   +    ++   R P     
Sbjct: 66  ASQVSDYASSVPAFAARLMQAFWPGPLTVILPRREGVALA--AAGGQESIGLRCPAHPVA 123

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              ++  G  +A PSANR G++S T   H+ +     E+ L++DGG   +G+ES+IV+  
Sbjct: 124 LAFLKACGTGVAGPSANRFGRVSPTTALHV-AQEFGDEL-LVLDGGPCAVGIESSIVDCT 181

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
             + V +LRPG L    L+ A    +   E      S P++ G L++HYAP ++VRL  +
Sbjct: 182 RGRPV-LLRPGVLTRAQLEAACGEPVLGKEDAQAAGSAPRASGTLEAHYAPNAKVRL--M 238

Query: 242 HVNPREALIRFGNVPIKNIE-NAIISLNLSKTGKLKE--------AAFNLFNYMKIADDS 292
                +A +        +I   A   L +  T  L           A  LF  ++  D  
Sbjct: 239 DAGAMQAALDLLGADAAHIAIYARTLLGIKSTRVLYRRMPDDALATAQQLFAVLRDFDAQ 298

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           GA  I   + P       + +RL RAAA
Sbjct: 299 GARLIWVETPPVACEWDGVRDRLGRAAA 326


>gi|107023558|ref|YP_621885.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054]
 gi|116690642|ref|YP_836265.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia
           HI2424]
 gi|105893747|gb|ABF76912.1| translation factor SUA5 [Burkholderia cenocepacia AU 1054]
 gi|116648731|gb|ABK09372.1| translation factor SUA5 [Burkholderia cenocepacia HI2424]
          Length = 342

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 36/321 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P   H L
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAHAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136
            + FWPGPLTL+L   +   I    +    +   R P     + L+  +     GH  +A
Sbjct: 87  IEAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LRPG 
Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201

Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
           +  + +   +  + +L    D T+ P++ G LK+HYAPR+ + L      P +AL     
Sbjct: 202 VTPQQIADVLGRAPKLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255

Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299
               + E   +    S+ G   +A               A +L+  ++  D +  + I  
Sbjct: 256 AAQTDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILI 315

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             +P     IA+N+RL RAAA
Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336


>gi|293607071|ref|ZP_06689414.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814561|gb|EFF73699.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC
           43553]
          Length = 352

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 157/327 (48%), Gaps = 31/327 (9%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76
            LD  L  A PTETVYGL  D+++P A+ ++Y  K RP+ +P+I H++    V   A+ V
Sbjct: 22  LLDGEL-AAFPTETVYGLGADAQSPEAVAKIYAAKGRPSNHPVIVHIAPTGDVSYWAADV 80

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP- 134
            P +  L   FWPGPLTL+L       D       ++   C   P           G P 
Sbjct: 81  PPEARLLIDAFWPGPLTLILKRAPHIADTVSGGQDSIGIRCPSHPVAQALLAAFAAGKPN 140

Query: 135 ----LAIPSANRSGQISITNVKHILS---SSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
               +A PSAN+ GQ+S T  +H+ S     +   +P +++GG S++G+ESTI+++    
Sbjct: 141 GQGGVAAPSANKFGQVSPTRAEHVRSEFPDEVAAGMP-VLEGGASEVGIESTILDLSRLD 199

Query: 188 KVR---ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR------SQVRL 238
           +     +LRPG +    ++  + V++     + + P++ G LK+HYAPR      S  RL
Sbjct: 200 RGAGPVLLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTPLELASDERL 257

Query: 239 RAIHV-----NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           R I       + +  ++ +G  P     +A +          + A   L+  ++  D  G
Sbjct: 258 RDIAQGRNLPSGKVVVVAYGEPP--EALDARVQWQPVPADPARYAQ-ALYGLLRDLDTQG 314

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
            + I   + P      A+N+R+ RAAA
Sbjct: 315 YARIVVQAPPATDAWHAVNDRIGRAAA 341


>gi|206561172|ref|YP_002231937.1| hypothetical protein BCAL2835 [Burkholderia cenocepacia J2315]
 gi|198037214|emb|CAR53135.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 342

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 36/321 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P   H L
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAHAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136
              FWPGPLTL+L   +   I    +    +   R P     + L+  +     GH  +A
Sbjct: 87  IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LRPG 
Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201

Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
           +  + +   +  + +L    D T+ P++ G LK+HYAPR+ + L      P +AL     
Sbjct: 202 VTPQQIADVLGRAPKLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255

Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299
               + E   +    S+ G+  +A               A +L+  ++  D +  + I  
Sbjct: 256 AAQTDGERIALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILV 315

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             +P     IA+N+RL RAAA
Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336


>gi|156845519|ref|XP_001645650.1| hypothetical protein Kpol_541p35 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116316|gb|EDO17792.1| hypothetical protein Kpol_541p35 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 422

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 128/257 (49%), Gaps = 27/257 (10%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T++  L  A    D    +A PTETVYGL   S N  ++  +Y+ K RP+ NPLI HVS 
Sbjct: 45  TEAALLEAASIIRDTDNVVAFPTETVYGLGGSSLNDKSVLNIYKAKNRPSDNPLISHVSS 104

Query: 67  ISMVKKH---------------ASVDPLSLHLAKLFWPGPLTLVLDL--LSTTDIHPLST 109
           I  + +                +++ P+  +L    WPGPLT++L +      ++  L+T
Sbjct: 105 IDQLNRKIYNNVSETNNPKSLLSNIPPIYHNLISKLWPGPLTILLPVPKEGNGNLSKLTT 164

Query: 110 ANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
            N  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IPLI+D
Sbjct: 165 VNQPTFAVRIPSHPVARALIALSDTPIAAPSANASTRPSPTLASHVF-HDLNTKIPLILD 223

Query: 169 GGISKIGLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVDETSTPQ 221
           GG   +G+EST+++  C     +LRPGG   E +        ++  VE +  V +    +
Sbjct: 224 GGACSVGVESTVIDGLCNPPA-LLRPGGFTYEQIVHLGGESWKSCKVENKKTVLKGEKVR 282

Query: 222 SPGMLKSHYAPRSQVRL 238
           +PGM   HY+P ++V L
Sbjct: 283 TPGMKYRHYSPSAKVVL 299


>gi|149234890|ref|XP_001523324.1| protein SUA5 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453113|gb|EDK47369.1| protein SUA5 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 454

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 173/401 (43%), Gaps = 90/401 (22%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T++N    A E L     I  PTETVYGLA  + +  +++ +Y  K+RPA NPLI HVS 
Sbjct: 50  TEANIKLAAKELLTTNNAIGFPTETVYGLAGSALSDESVKSIYRAKQRPADNPLIIHVSS 109

Query: 67  ISMVKK-----HASVDPLSLHLAKLFWPGPLTLVL------------------------- 96
           +S +++     +  +  +  +L + FWPGPLT++L                         
Sbjct: 110 LSQLQRKLLPANYEIPKIYHNLIEHFWPGPLTILLPNNSSNSNSNSSSNSNSNSNSNSSS 169

Query: 97  ----DLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNV 151
                  + + I    TAN  T   R+P     + LI     PLA PSAN S + S T  
Sbjct: 170 NSSSSSNNKSPISSYVTANQDTFAVRMPAHPVARALIAISDLPLAAPSANSSTKPSPTLA 229

Query: 152 KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
           +H++   +  +IP+++DGG   +G+EST+V+   +  + +LRPGG+ +E LKR    E +
Sbjct: 230 QHVM-HDLGGKIPIVLDGGACDVGVESTVVDGLSDPPM-LLRPGGVSLEELKRVGGEEWK 287

Query: 212 YCVDETSTP------QSPGMLKSHYAPRSQVRLRAIHVNPREALIRF---GNVPIKNIE- 261
                  T       ++PGM   HY+P ++V L     +  +A+ ++     V +  +E 
Sbjct: 288 NVRVAKRTAGADELVKTPGMKYKHYSPDAKVVLFVNCGDGEDAIAKYLKANRVSVDGVEV 347

Query: 262 -------------------NAIISLNLS--KTGKLKEAAF-------------------- 280
                                +IS N    K   LK   F                    
Sbjct: 348 GARGDLRDSKDSKQEGQGQKHLISANADTPKVALLKSRHFRDYKGIDVVRDLGSAGDDIA 407

Query: 281 -NLFNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAA 319
            NLF Y++  D D     I    +     G+AI NRL++AA
Sbjct: 408 RNLFKYLREVDEDEKVDLILIEGVEEVDEGLAIMNRLKKAA 448


>gi|254247338|ref|ZP_04940659.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia PC184]
 gi|124872114|gb|EAY63830.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia PC184]
          Length = 342

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 152/321 (47%), Gaps = 36/321 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P   H L
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAHAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136
              FWPGPLTL+L   +   I    +    +   R P     + L+  +     GH  +A
Sbjct: 87  IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LRPG 
Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201

Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
           +  + +   +  + +L    D T+ P++ G LK+HYAPR+ + L      P +AL     
Sbjct: 202 VTPQQIADVLGRAPKLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255

Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299
               + E   +    S+ G   +A               A +L+  ++  D +  + I  
Sbjct: 256 AAQTDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILV 315

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             +P     IA+N+RL RAAA
Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336


>gi|309780644|ref|ZP_07675386.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA]
 gi|308920567|gb|EFP66222.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA]
          Length = 337

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 159/324 (49%), Gaps = 24/324 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI ++Y  K RP+ +P+I HV D + + 
Sbjct: 17  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIAKIYAAKGRPSNHPVIVHVVDGADIS 76

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P ++L L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 77  YWTDEVPGIALQLIEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 134

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTI+++ + 
Sbjct: 135 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIIDLSRL 192

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240
           ++ +   +LRPG +  + ++R ++ EL    D  +   S G LK+HYAPR+ + L +   
Sbjct: 193 DQGIGPVLLRPGAITPDDIER-VTGELPAAPDAAAPRAS-GTLKAHYAPRTPLYLLSAAD 250

Query: 241 ----IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
               +   P +  I +   P+   +     +  +  G    A + L   +   D  G  +
Sbjct: 251 VPARLAALPADKRIVWLGTPVALRDGCDQRVAPATPGAYANALYALLREL---DRGGYDA 307

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I   ++ +     A+N+RL RAAA
Sbjct: 308 IWVETLADTPAWAAVNDRLRRAAA 331


>gi|317405862|gb|EFV86145.1| translation factor [Achromobacter xylosoxidans C54]
          Length = 348

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 155/324 (47%), Gaps = 30/324 (9%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHASVD 77
           AG  +A PTETVYGL  D+ NP A+  +Y  K RP+ +P+I H++   D+S     A V 
Sbjct: 22  AGELVAFPTETVYGLGADAENPRAVGSIYAAKGRPSNHPVIVHIAPQGDLSYWA--AEVP 79

Query: 78  PLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP-- 134
           P +  L   FWPGPLTL+L       D       ++   C   P           G P  
Sbjct: 80  PEARLLIDAFWPGPLTLILKRAPHIADTVSGGQDSIGIRCPSHPVAQALLAAFAAGKPNG 139

Query: 135 ---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              +A PSAN+ GQ+S T   H+       +   +P +++GG S++G+ESTI+++    +
Sbjct: 140 QGGVAAPSANKFGQVSPTRADHVRGEFPDEVAAGMP-VLEGGASEVGIESTILDLSRLDR 198

Query: 189 VR---ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
                +LRPG +    ++  + V++     + + P++ G LK+HYAPR+ + L A     
Sbjct: 199 GAGPVLLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTALEL-ASDARL 255

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLK---------EAAFNLFNYMKIADDSGASS 296
           + AL   G  P K +  A      +   +++           A  L+  ++  D  G + 
Sbjct: 256 QAALQGRGLPPGKVVVVAYAPPPAACDTRIQWQQVPADPARYAQALYALLRDLDGQGFAR 315

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I   + P+     A+N+R+ RAAA
Sbjct: 316 IIVQAPPDSEAWHAVNDRIGRAAA 339


>gi|260221970|emb|CBA31066.1| hypothetical protein Csp_C26690 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 352

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 159/335 (47%), Gaps = 52/335 (15%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-----SMVKKHASVDPL 79
           + +PTETVYGL  D+ +P A+ +++  K RP+ +PLI HV+        +    A V   
Sbjct: 31  LGLPTETVYGLGADASDPVAVGKIFNAKGRPSDHPLIVHVAAFDGGMGGVAHYCARVPAF 90

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTD---------------IHPLSTANLKTACFRVPCGFT 124
           +  L   FWPGPLTL+L                       HP++ A L T   R P    
Sbjct: 91  AQQLMSAFWPGPLTLILPRKEGVGEAAAGGQNSIGLRCPAHPVAQAVLAT--LRKPSDGG 148

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +   E +G  +A PSAN+ G++S T   H+  S    ++ LI+DGG  ++G+ESTI++  
Sbjct: 149 R---EVWG--IAAPSANKFGRVSPTTAAHV-HSEFGDDL-LILDGGPCEVGIESTIID-- 199

Query: 185 CEKKVRI-LRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQVRL- 238
           C +   + LRPG +  + ++ A   +L    E        P++ G L SHYAP + VRL 
Sbjct: 200 CTRGAPVLLRPGSITAQQVEDACGRKLLSKEELLAQSQQAPRASGTLDSHYAPSATVRLM 259

Query: 239 --RAIHV-----------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
             +A+             + R  +  +   P+ ++ + +++ +   +   + AA  LF+ 
Sbjct: 260 DAKALQSALDLLSGTTPPDKRPTIALYHRSPL-HVRSPLVTAHRMPS-HAQPAAHELFSK 317

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  D  G   I   + P+      + +RL RAAA
Sbjct: 318 LREMDAQGVKLIWVEAPPDSPEWDGVRDRLTRAAA 352


>gi|314935935|ref|ZP_07843285.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655941|gb|EFS19683.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 346

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 157/329 (47%), Gaps = 21/329 (6%)

Query: 8   DSNALRKACE----FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           DS    +  E    + + GL IAIPTETVYGL  +++N  A+  +Y+ K RP+ NPLI H
Sbjct: 14  DSQTFSQLAEIKTIYENGGL-IAIPTETVYGLGANAKNEQAVENIYKAKGRPSDNPLIVH 72

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   S +    S  P     L   FWPGP++ +L L        + T  L +   R+P  
Sbjct: 73  IYKQSQMDAFVSTIPKEAQKLMNAFWPGPISFILPLKQGYLCEKV-TGGLNSIAVRMPSH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + ++E    P+A PSAN SG+ S T  +H+  + +  +I  I++G  S+ GLEST++
Sbjct: 132 PIGRAILEYVDLPIAAPSANISGRPSPTTFQHVY-NDLNGKIDGIVNGDQSEEGLESTVL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +   +   RI RPG +    L   +  SV ++Y  ++   P +PGM   HYAP++ V + 
Sbjct: 191 DC-TQFPFRIARPGSITQTMLNHVVPHSV-IQYDYNQLERPIAPGMKYKHYAPKTPVYML 248

Query: 240 AIHVNPREALIRFGNVPI------KNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292
                P   L   G   +      K +      ++L +  + +K A  NL+  +   DD 
Sbjct: 249 TEFTQPISELNESGLAFVLPSSMKKYVPKDCTFISLCENQRDVKGANHNLYKILHDIDDD 308

Query: 293 GASSIAF-SSIPNHGLGIAINNRLERAAA 320
                AF  +  N     A+ NR+ +A  
Sbjct: 309 ERIQKAFIYTFDNIEGSEAVMNRMMKATG 337


>gi|170733986|ref|YP_001765933.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3]
 gi|169817228|gb|ACA91811.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3]
          Length = 342

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 36/321 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P   H L
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAHAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136
            + FWPGPLTL+L   +   I    +    +   R P     + L+  +     GH  +A
Sbjct: 87  IEAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LRPG 
Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGPSEVGIESTILDL-SRGFPALLRPGH 201

Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
           +  + +   +  + +L    D T+ P++ G LK+HYAPR+ + L      P +AL     
Sbjct: 202 VTPQQIADVLGRAPKLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255

Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299
               + E   +    S+ G   +A               A +L+  ++  D +  + I  
Sbjct: 256 AAQTDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILV 315

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             +P     IA+N+RL RAAA
Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336


>gi|330826999|ref|YP_004390302.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           K601]
 gi|329312371|gb|AEB86786.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           K601]
          Length = 332

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 170/339 (50%), Gaps = 31/339 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T  ++++ A   L  G  + +PTETVYGLA D+ N  A+ R++  K RPA +PLI 
Sbjct: 2   ILDGTLPSSVQAAARLLARGELLGLPTETVYGLAADADNDAAVARIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + +  +A   PL +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADSTAITHYAKEVPLFAQQLIDAFWPGPLTLILPRLPAAAR--ASTGGQDSVGLRCPA 119

Query: 122 GFTKKLI---------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 +           +G  +A PSAN  G++S T  +H+ + +   E+ L++DGG  
Sbjct: 120 HPVAHAVLAACQRLDPPVWG--VAAPSANHFGKVSPTTAQHV-ADAFGDEL-LVLDGGAC 175

Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHY 230
            +G+ESTI++  C + V + LRPG +    ++RA  +  L        TP++ G L +HY
Sbjct: 176 AVGIESTIID--CTRGVPVLLRPGAISRADVQRACGLRPLSKEELPAHTPRASGTLLAHY 233

Query: 231 APRSQVRL-------RAIHVNPREA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           AP ++VRL         + V   +A  L  +   P+++  + II   +        AA  
Sbjct: 234 APTARVRLMDARQLQAGLDVLGADAAHLAVYARAPLRSASSRIILRRMPD--DAAAAAQQ 291

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           LF  ++  DD+GA  I   + P+      + +RL+RAAA
Sbjct: 292 LFAALRGFDDAGARLIWIETPPDTPDWEGVRDRLQRAAA 330


>gi|319778521|ref|YP_004129434.1| Sua5 subfamily-like protein [Taylorella equigenitalis MCE9]
 gi|317108545|gb|ADU91291.1| Sua5 subfamily-like protein [Taylorella equigenitalis MCE9]
          Length = 330

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 157/336 (46%), Gaps = 28/336 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M  +D+   + A   LD GL +A+PTETVYGL  D+ N  A+ R+Y +K RP  +PLI H
Sbjct: 1   MQFSDTTIKQAALYLLDGGL-VALPTETVYGLGADALNKDAVERIYSVKGRPTNHPLIVH 59

Query: 64  V-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120
           V  D  +    + +   +  L K FWPGPLTLVL    + ++    T    T   R P  
Sbjct: 60  VHKDADLNFWCSEIPDDAKKLIKAFWPGPLTLVLP--KSQNVPDYITGGQSTVAIRSPNH 117

Query: 121 -------CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
                    F+ KL    G  +  PSAN  G +S T  +H+        I   IDGG S+
Sbjct: 118 PIAQAVLLEFS-KLKNNAG--IVAPSANLFGHVSPTKNEHVKDEFPSDNI-YFIDGGSSE 173

Query: 174 IGLESTIVNVQCEK-KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
           +G+ESTI+++   K    ILRPG +  + + + + VE +    + S P   G LKSHYAP
Sbjct: 174 VGIESTILDLSRPKIGPVILRPGHITKKDIYKVLGVEPK--DKDISAPVVSGSLKSHYAP 231

Query: 233 RSQV-------RLRAI-HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
           +  +        L  I H+  ++  I + +    +I N I  +         E A  ++ 
Sbjct: 232 KIPIYPLDDISNLDFINHLKHKKVAIIYHSNNHYDILNEIDVIYYKLPSLSTEYASKIYE 291

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  +      I   S+P      A+ +R+ RA A
Sbjct: 292 TLRKIESQNMDLILLESLPLDAEWDAVRDRMNRALA 327


>gi|319796432|ref|YP_004158072.1| sua5/ycio/yrdc/ywlc family protein [Variovorax paradoxus EPS]
 gi|315598895|gb|ADU39961.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus EPS]
          Length = 333

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 14/246 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+      A+ +A   L AG  +A PTETVYGL  D+ +  A+  +++ K RPA +PLI 
Sbjct: 2   ILDGQSPEAIAEAVRMLRAGGLVAFPTETVYGLGADASSDMAVAGIFKAKGRPADHPLIV 61

Query: 63  HVS----DISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKT 114
           HV+        + + A   PL +  L + FWPGPLTL++     + T       T  L+ 
Sbjct: 62  HVAAGMKGTEALSRFAQPLPLFAQKLVQAFWPGPLTLIVTRQPGVGTAAAGGQDTIGLRC 121

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
               V     +   E     +A PSANR G++S T  +H+      + +P ++DGG  ++
Sbjct: 122 PSHPVAQALLEACAEQGVPGVAGPSANRFGRVSPTTAQHVY-EEFGEAVP-VVDGGACEV 179

Query: 175 GLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAP 232
           G+ESTIV+  C +   + LRPG +    ++ A   +L +  V ET  P++ G L++HYAP
Sbjct: 180 GIESTIVD--CSRGAPVLLRPGLITRAQIEAACGEKLSDRDVLETPDPRASGTLEAHYAP 237

Query: 233 RSQVRL 238
            ++VRL
Sbjct: 238 NAKVRL 243


>gi|16081439|ref|NP_393782.1| sua5 related protein [Thermoplasma acidophilum DSM 1728]
 gi|10639445|emb|CAC11447.1| sua5 related protein [Thermoplasma acidophilum]
          Length = 352

 Score =  119 bits (297), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 24/325 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A + L +G  +  PTETVYGL   + NP A ++++  K RP+ NPLI H+S  SM
Sbjct: 15  DQIVDAVDALRSGGTVVFPTETVYGLGALASNPEACKKIFIAKGRPSDNPLIVHIS--SM 72

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +  +  DP   +  +     WPGPLT+V  +     I  + TA L T   R+P      
Sbjct: 73  EQFFSYSDPDDSYPIEGLNKAWPGPLTVV--VRKAQGISDVVTAGLPTVAIRMPDDPIAH 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE  G P+A PSAN S + SIT+ +  +   +   + +IID G ++ G+ESTI+++  
Sbjct: 131 DLIEMAG-PIAAPSANISTRPSITDSRDAI-RFLDGRVDVIIDAGPTRFGIESTIIDI-T 187

Query: 186 EKKVRILRPGGLEIETLKRA----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
           ++   +LRPG   IE L+      +  ++   + E     +PGM   HY+P +++ L   
Sbjct: 188 KRPAELLRPGSYAIEDLEPVFGPIVYGDVARGLGEAKIAITPGMKYRHYSPSTKLILAET 247

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
               R I     E ++      + +     I +   +   L   A NLF+     DD   
Sbjct: 248 REVFRQILDTVDEDMVVLATEEMVDGHKKAIIIGTDR--DLYSVAHNLFSSFIALDDMHV 305

Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319
                      G+G A+ NR+ +A+
Sbjct: 306 DLALIHPFEERGIGFALMNRIRKAS 330


>gi|329908773|ref|ZP_08274951.1| Sua5 YciO YrdC YwlC family protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546606|gb|EGF31576.1| Sua5 YciO YrdC YwlC family protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 333

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 161/335 (48%), Gaps = 32/335 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS+   + + +A   L+ G  +A PTETVYGL  D+ NP AI R+Y  K RP+ +P+I H
Sbjct: 1   MSLPHDDDILRAAGLLEQGRLVAFPTETVYGLGADAENPAAIARIYAAKGRPSNHPVIVH 60

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC-FRVPC 121
           ++  +      S  P     L   FWPGPLTL+L   +     P + A  + +   R P 
Sbjct: 61  LAPEADPGYWVSAIPNEAQALIDAFWPGPLTLILPRAAHI---PAAVAGGQNSIGVRCPS 117

Query: 122 G-FTKKLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
               + L+  +      +A PSAN+ G +S T  +H+        + LI+DGG S++G+E
Sbjct: 118 HPVAQALLRAFKGGKGGIAAPSANKFGHVSPTIAQHVRDEFTDGSVDLILDGGQSEVGIE 177

Query: 178 STIVNVQ--CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           S+I+++         +LRPG   I  L+ A  + +     + + P++ G L++HYAPR+ 
Sbjct: 178 SSIIDLSRLDSHGPVLLRPG--RITALQLAQVLGVAPAAPDAAAPRASGTLEAHYAPRTP 235

Query: 236 VRLRAIHVNP-----------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
           V + A    P           R AL+ + +    +     + L  S  G     A  L+ 
Sbjct: 236 VAMIASADLPQILQQLAAAGRRVALLHWSD----SQHAGALQLPSSPAGY----AHGLYA 287

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            +++ D + A  I   + P      AIN+RL RAA
Sbjct: 288 GLRLLDMADADLILIEAPPGSADWQAINDRLRRAA 322


>gi|11498387|ref|NP_069615.1| hypothetical protein AF0781 [Archaeoglobus fulgidus DSM 4304]
 gi|2649831|gb|AAB90461.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 309

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 21/315 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +RKA   L AG  +A PTETVYG+  D+ N  A+RRLYEIK R    P I  V     
Sbjct: 10  EGIRKAVAVLRAGGIVAFPTETVYGMGCDATNEEALRRLYEIKGRSLNKPFIVGVWSRDY 69

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPCGFTKKL 127
           V K A VD  +  L + F+PGPLTLVL       + + P     ++     VP     +L
Sbjct: 70  VGKIAEVDERAEKLMEAFFPGPLTLVLKSKGVMPSLLSPKGKIAVRMPAHEVPL----QL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+ +PSAN SG+ S+   +H++   +   I  ++ G   K+G+ESTIV++  E 
Sbjct: 126 MEMLRKPIVVPSANLSGRPSLMRWEHVV-EELGSRIDAVVKGE-CKVGVESTIVDL-TET 182

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
             ++LR G + +E++K+ + V +E       T      +      R+  R++   V+  E
Sbjct: 183 PAKVLRVGAVSVESIKKHVEVVVE---PRKETYSLSCQVYVFVGERALQRIKEF-VDEAE 238

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
              R   +  + I +  I +  S     +E + NLF+ ++ A+      I    + N   
Sbjct: 239 KRGRVVVIAREKITDETIVIGKSA----EEYSANLFSAVREAESRRPDIIVIEGVENE-- 292

Query: 308 GIAINNRLERAAAPR 322
             AI +RL R A  R
Sbjct: 293 --AIMDRLRRLAGER 305


>gi|321248724|ref|XP_003191218.1| protein required for respiratory growth [Cryptococcus gattii WM276]
 gi|317457685|gb|ADV19431.1| Protein required for respiratory growth, putative [Cryptococcus
           gattii WM276]
          Length = 488

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/283 (34%), Positives = 143/283 (50%), Gaps = 53/283 (18%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + L +   +A+PTETVYGLA  S +P A + +Y+IK RP+ NPLI HVS ++M++
Sbjct: 64  LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLNMLR 123

Query: 72  K----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +      +  PL L L   FWPGPL+L+    S            +T   R+P    T  
Sbjct: 124 RLLPPAYNFSPLYLALINAFWPGPLSLLFPSPSPP-----PPPAPQTNAIRMPSHPLTLA 178

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQC 185
           LI     PL+ PSAN SG+ S T  +H+L+  +    +  IIDGG  ++G+EST+VN   
Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVLNDLNGADGLGCIIDGGDCEVGVESTVVNGLE 238

Query: 186 EK-----KVRILRPGGLEIETLKRAIS--------VEL---------------------- 210
            K     KV ILRPGGL +E +K+ +          E+                      
Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIVDEVDGGEGKTEIFLLGKPWKRASFKHSSSTDSVK 298

Query: 211 EYCVDETSTPQ------SPGMLKSHYAPRSQVR-LRAIHVNPR 246
           +  V+ ++TP+      +PGM   HY+PR  V  L+  +V PR
Sbjct: 299 QNDVNFSTTPKVNLPPSTPGMKYRHYSPRVPVFLLKPSNVFPR 341


>gi|332285295|ref|YP_004417206.1| hypothetical protein PT7_2042 [Pusillimonas sp. T7-7]
 gi|330429248|gb|AEC20582.1| hypothetical protein PT7_2042 [Pusillimonas sp. T7-7]
          Length = 346

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 160/343 (46%), Gaps = 48/343 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-DISMV 70
           L  A   L  G  +A PTETVYGL  D+ NP A+  +Y  K RPA +P+I HV+ +  + 
Sbjct: 15  LSAAARRLAQGGLVAFPTETVYGLGADAENPQALASIYAAKGRPANHPVIVHVAPEADLG 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLD--------LLSTTD-------IHPLSTANLKTA 115
              ASV   +  L + FWPGPLTL+L         +    D        HP++ A L+  
Sbjct: 75  YWAASVPAEARALIQAFWPGPLTLILPRAPHIPAAVSGGQDSIGLRCPSHPVAQALLREF 134

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISK 173
             + P G            +A PSAN+ GQ+S T+  H+ +    +  +  L+++GG S+
Sbjct: 135 ARQKPNGQGG---------VAAPSANKFGQVSPTHAAHVRTEFPELGTDQLLVLEGGPSE 185

Query: 174 IGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHY 230
           +G+ESTIV+V          +LRPG +    L   +         +   PQ  G LK+HY
Sbjct: 186 VGIESTIVDVSRLGLGVGPVLLRPGHISAAQLAEVLGA--PPARPDQDAPQVSGSLKAHY 243

Query: 231 APRSQVRLRAI-------------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277
           AP + +++  +             +++ R A++ F N  + N  + + +L  +    +  
Sbjct: 244 APHTPLQVLPLDQLLDAARQSLPNNLSGRTAVVVF-NPELLNTMSDVDTLKCNADPAVY- 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            A  L+  ++  D+ G   I     P      A+N+R+ RAAA
Sbjct: 302 -ARELYALLRRLDEQGYDRILMEQPPRTATWQAVNDRIGRAAA 343


>gi|187925244|ref|YP_001896886.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN]
 gi|187716438|gb|ACD17662.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN]
          Length = 346

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 161/342 (47%), Gaps = 47/342 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   LDAG  +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H++   
Sbjct: 16  AEQIEHAAALLDAGELVAFPTETVYGLGGDAESPDAVARIYAAKGRPANHPVIVHLA--P 73

Query: 69  MVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
               +  V+ L     +L   FWPGPLTL+L       I    +    +   R P     
Sbjct: 74  QGDPNYWVERLPAEAQRLIDAFWPGPLTLILK--RAARIPAAVSGGQDSVGLRCPSHPVA 131

Query: 125 KKLIETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIG 175
           + L++ +     GH  +A PSANR G +S T  +H+      +I      ++DGG S +G
Sbjct: 132 QALLDAFNALRGGHGGVAAPSANRFGHVSPTTAQHVRDEFGGAIH-----VLDGGASDVG 186

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPR 233
           +ESTI+++       +LRPG +  + +   +  E     D  + + P++ G LK+HYAPR
Sbjct: 187 IESTILDL-SRGFPALLRPGRVTPQDIADVLG-EAPRLPDGSDATAPRASGTLKAHYAPR 244

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA--------------- 278
           + + L  +     E L+       +  E   +    S+ G+  +A               
Sbjct: 245 TPLAL--LPFVALEPLL----AARQADERVALVARASRAGRWADAEGVHFIAAPEDPHVY 298

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           A  L+  ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 299 ARELYGLLRALDRANVTRILIEKLPDTIEWIAVNDRLGRAAA 340


>gi|242371607|ref|ZP_04817181.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242350674|gb|EES42275.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 347

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 8/214 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83
           +AIPTETVYGL  ++++  A++++YE K RP+ NPLI HV     + K    +D     L
Sbjct: 34  VAIPTETVYGLGANAKDEVAVKKIYEAKGRPSDNPLIVHVHHRKQLDKFVEHIDERVSKL 93

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
            + FWPGP++ +L L S   +    T  L +   R+P     + L++    P+A PSAN 
Sbjct: 94  MEAFWPGPISFILPLKSGY-LCETVTGGLNSIAVRMPSHKIGRALLQVIDEPIAAPSANL 152

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ S T   H+    +  +I  I++G  S+ GLEST+++   +   RI RPG +  E +
Sbjct: 153 SGRPSPTTFDHVF-HDLNHKIDGIVNGDQSEEGLESTVLDC-TQFPFRIARPGSVTKEMI 210

Query: 203 KRAI--SVELEYCVDETSTPQSPGMLKSHYAPRS 234
           ++ +  SV+ +    E   P +PGM   HY+P +
Sbjct: 211 EKVLPESVQ-DIHFTENEKPIAPGMKYKHYSPDT 243


>gi|115352720|ref|YP_774559.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD]
 gi|115282708|gb|ABI88225.1| translation factor SUA5 [Burkholderia ambifaria AMMD]
          Length = 342

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 36/321 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P     L
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAQAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136
              FWPGPLTL+L   +   I    +    +   R P     + L+  +     GH  +A
Sbjct: 87  IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LRPG 
Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201

Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
           +  + +   +  +  L    D T+ P++ G LK+HYAPR+ + L      P +AL     
Sbjct: 202 VTPQQIADVLGRAPRLPDGGDATA-PRASGTLKAHYAPRTPLSLM-----PFDALEPLLA 255

Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299
               + E   +    S+ G+  +A               A +L+  ++  D +  + I  
Sbjct: 256 AAQTDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILV 315

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             +P     IA+N+RL RAAA
Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336


>gi|224477104|ref|YP_002634710.1| hypothetical protein Sca_1619 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421711|emb|CAL28525.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 348

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/243 (31%), Positives = 127/243 (52%), Gaps = 30/243 (12%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +  E    G  +AIPTETVYGL  ++++   ++++YE K RP+ NPLI H+ D + +
Sbjct: 21  AIEEIAEVYREGELVAIPTETVYGLGANAKDDATVKKIYEAKGRPSDNPLIVHIYDEAQM 80

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
               +  P  +  L  +FWPGP++ +L         PL    L   C RV  G +   + 
Sbjct: 81  DDFITEIPEKAQQLMDVFWPGPISFIL---------PLKEGFL---CKRVSGGLSSIAVR 128

Query: 130 TYGH------------PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
              H            P+A PSAN SG+ S T  +H+ +  +  ++  I++G  S+ GLE
Sbjct: 129 MPSHPVGRAILKAVRLPIAAPSANLSGRPSPTTFEHV-NHDLNGKVAGIVNGDQSEEGLE 187

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST+++   +   RI RPG +  E +++ I  S++ +  ++ T  P +PGM   HY+P + 
Sbjct: 188 STVLDC-TQYPFRIARPGAITAEMIEQVIPGSIDTDSVLN-TDKPIAPGMKYKHYSPDTP 245

Query: 236 VRL 238
           V +
Sbjct: 246 VAM 248


>gi|312797153|ref|YP_004030075.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI
           454]
 gi|312168928|emb|CBW75931.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI
           454]
          Length = 347

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 149/326 (45%), Gaps = 33/326 (10%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS----DISMVKKHA 74
           LDAG  +A PTETVYGL  D+RNP A+ R+Y  K RPA +P+I H++        V+   
Sbjct: 25  LDAGELVAFPTETVYGLGADARNPQAVARIYAAKGRPATHPVIVHLAPGDDPGGWVRTLG 84

Query: 75  SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE-T 130
           S    +  L   FWPGPLTL+L   D +         +  L+     V     +   +  
Sbjct: 85  SE---ARRLIDAFWPGPLTLILKRADAIPDAVSGGQDSIGLRCPSHPVAQALLRAFSDLQ 141

Query: 131 YGH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +GH  +A PSAN+ G +S T  +H+      S+      ++DGG   +G+ESTI+++   
Sbjct: 142 HGHGGVAAPSANKFGHVSPTTAQHVRDEFGDSVH-----VLDGGACDVGIESTIIDLS-R 195

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHV-- 243
               +LRPG +  + +   +  E        +T P++ G LK+HYAPR+ + L  +    
Sbjct: 196 GFPALLRPGRITPQQIADVLGAEPRLPDGSDATVPRASGTLKAHYAPRTPLALLPLEAIL 255

Query: 244 ------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGA 294
                  P E L       +   +      NL      ++    A  L+  ++  D +  
Sbjct: 256 CEVAAHAPHERLAVIARADLPQAKALCARPNLQFVAAPEDPHVYARELYRMLRELDGANV 315

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I    +P      A+N+RL RAAA
Sbjct: 316 LRIFIEPLPATAEWAAVNDRLRRAAA 341


>gi|311108227|ref|YP_003981080.1| SUA5 domain-containing protein [Achromobacter xylosoxidans A8]
 gi|310762916|gb|ADP18365.1| SUA5 domain protein [Achromobacter xylosoxidans A8]
          Length = 350

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 150/319 (47%), Gaps = 30/319 (9%)

Query: 26  AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA- 84
           A PTETVYGL  D+ NP A+ ++Y  K RP+ +P+I H++    +   A+  P    L  
Sbjct: 29  AFPTETVYGLGADAENPQAVAKIYAAKGRPSNHPVIVHIAPQGDLSYWAAEVPQEARLLI 88

Query: 85  KLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP-----LAIP 138
             FWPGPLTL+L       D       ++   C   P           G P     +A P
Sbjct: 89  DAFWPGPLTLILKRAPHIVDTVSGGQDSIGIRCPSHPVAQALLAAFAAGKPNGQGGVAAP 148

Query: 139 SANRSGQISITNVKHILS---SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR---IL 192
           SAN+ GQ+S T  +H+ S     +   +P +++GG S++G+ESTI+++    +     +L
Sbjct: 149 SANKFGQVSPTRAEHVRSEFPEEVAAGMP-VLEGGASEVGIESTILDLSRLDRGAGPVLL 207

Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR------SQVRLRAIHVNP- 245
           RPG +    ++  + V++     + + P++ G LK+HYAPR      +  RLR +     
Sbjct: 208 RPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTALELATDARLRDVVQGQG 265

Query: 246 ----REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
               +  ++ +G+ P             +   +  +A   L+  ++  D  G + I   +
Sbjct: 266 LPEGKVVVVAYGDRPAALDARVQWQAVPADPARYAQA---LYGLLRDLDQQGYARIIVQA 322

Query: 302 IPNHGLGIAINNRLERAAA 320
            P      A+N+R+ RAAA
Sbjct: 323 PPATDDWHAVNDRIGRAAA 341


>gi|78067422|ref|YP_370191.1| translation factor SUA5 [Burkholderia sp. 383]
 gi|77968167|gb|ABB09547.1| translation factor SUA5 [Burkholderia sp. 383]
          Length = 342

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 36/321 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P     L
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAQAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136
              FWPGPLTL+L   +   I    +    +   R P     + L+  +     GH  +A
Sbjct: 87  IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LRPG 
Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201

Query: 197 LEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
           +  + +   +  +  L    D T+ P++ G LK+HYAPR+ + L      P +AL     
Sbjct: 202 VTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALEPLLA 255

Query: 255 VPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSIAF 299
               + E   +    S+ G+  +A               A +L+  ++  D +  + I  
Sbjct: 256 AAQTDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILV 315

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             +P     IA+N+RL RAAA
Sbjct: 316 EKLPETVEWIAVNDRLGRAAA 336


>gi|242765157|ref|XP_002340917.1| translation initiation protein Sua5 [Talaromyces stipitatus ATCC
           10500]
 gi|218724113|gb|EED23530.1| translation initiation protein Sua5 [Talaromyces stipitatus ATCC
           10500]
          Length = 423

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 25/232 (10%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---------H 73
           +P+  PTETVYGL  D+    +++ +Y+ K+RP+ NPLI HV  I MV +          
Sbjct: 55  IPVGFPTETVYGLGADATRSGSVQGIYKAKQRPSDNPLIVHVDSIEMVNRLLNPNGGSPT 114

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
             +  +   L   FWPG LT++L     + +    TANL T   R+P   F + LI    
Sbjct: 115 TKIPAIYEPLISRFWPGALTILLPNPKGSLLAKEVTANLPTFGVRMPSSAFARLLIHVTD 174

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PLA PSAN S + S T  +H+           + +GG   +G+EST+V+        +L
Sbjct: 175 RPLAAPSANASTKPSPTTAEHVYHD--------LQNGGPCGVGVESTVVDGLTNPPA-VL 225

Query: 193 RPGGLEIETLKRA---ISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRL 238
           RPGG+ IE ++      +V++ Y    +     P+SPGM   HY+P+++V L
Sbjct: 226 RPGGIGIEEIRTCPGWENVQVGYNDSALQGKEAPRSPGMKYRHYSPKARVVL 277


>gi|240275733|gb|EER39246.1| translation initiation protein Sua5 [Ajellomyces capsulatus H143]
          Length = 473

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 131/249 (52%), Gaps = 21/249 (8%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H   
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHQPK 116

Query: 67  ISMVK----------KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
              ++          K   + P+   L   FWPGP+T +L   + + + P  T+ L+T  
Sbjct: 117 SRGLRLRTEGSQQGGKRNFIPPIYEPLISKFWPGPVT-ILPNQTPSPLAPEVTSTLRTFG 175

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI     PLA PSAN S + S T  +H+  + +   I +I+DGG   +G
Sbjct: 176 VRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADLQGRINMILDGGPCGVG 234

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEY---CVDETSTPQSPGMLKSH 229
           +EST+V+        +LRPGG+ IE ++       V++ Y    +     P +PGM   H
Sbjct: 235 VESTVVDGLLYPPA-VLRPGGIGIEEIRACPGWEDVQIGYKDGALQGKEVPLAPGMKYKH 293

Query: 230 YAPRSQVRL 238
           Y+P+++V L
Sbjct: 294 YSPKAKVVL 302


>gi|27468631|ref|NP_765268.1| hypothetical protein SE1713 [Staphylococcus epidermidis ATCC 12228]
 gi|57867582|ref|YP_189286.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           RP62A]
 gi|251812173|ref|ZP_04826646.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876476|ref|ZP_06285342.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           SK135]
 gi|293366080|ref|ZP_06612768.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316178|gb|AAO05312.1|AE016749_258 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57638240|gb|AAW55028.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           RP62A]
 gi|251804270|gb|EES56927.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281294728|gb|EFA87256.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           SK135]
 gi|291319803|gb|EFE60161.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726158|gb|EGG62630.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           VCU144]
 gi|329734140|gb|EGG70458.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           VCU045]
 gi|329735637|gb|EGG71920.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           VCU028]
          Length = 347

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 158/322 (49%), Gaps = 30/322 (9%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76
           FLD GL +AIPTETVYGL  ++RN  A+  +Y  K RP+ NPLI H+  I  +      +
Sbjct: 28  FLDGGL-VAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLDDFVEYI 86

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
           D     L   FWPGP++ +L L     +    T  L++   R+P     + L++    P+
Sbjct: 87  DDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQIVDEPI 145

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+ S T  +H+ +  +  ++  I++G   + GLEST+++   +   RI RPG
Sbjct: 146 AAPSANISGRPSPTTFEHV-NRDLNGKVNGIVNGDQCEEGLESTVIDC-TQFPFRIARPG 203

Query: 196 GLE---IET-LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAIHVNPR 246
            +    IET L  +I+ ++    +E   P +PGM   HY+P + + +     + I  + +
Sbjct: 204 SITQDMIETKLPHSINRQI---YEENEKPIAPGMKYKHYSPETPLTIVKDLNKKIANDDK 260

Query: 247 EALIRF-------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
            + + F         +P    EN+I        G  K A  NL+  +   D +     A+
Sbjct: 261 WSKVAFVFPESQRSLIP----ENSIFISLCENKGDFKSAGHNLYEILHELDQNEEIEEAY 316

Query: 300 -SSIPNHGLGIAINNRLERAAA 320
                ++    AI NR+ +AA+
Sbjct: 317 IYGFEDNHHTEAIMNRMLKAAS 338


>gi|330818174|ref|YP_004361879.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3]
 gi|327370567|gb|AEA61923.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3]
          Length = 351

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 161/341 (47%), Gaps = 38/341 (11%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDI 67
           A+ +A   L AG  +A PTETVYGL  D+ +P A+ R+Y  K RP+ +P+I H+    D 
Sbjct: 18  AIEEAATKLAAGQLVAFPTETVYGLGADAESPEAVARIYAAKGRPSNHPVIVHLPPGGDP 77

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
               +    D  +  L   FWPGPLTL+L       I    +    +   R P     ++
Sbjct: 78  GYWVESLPAD--AQKLIDAFWPGPLTLILK--RAAHIPDAVSGGQDSVALRCPSHPVAQR 133

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLE 177
           L+  +     GH  +A PSANR G +S T  +H+      S+      ++DGG +++G+E
Sbjct: 134 LLAAFSALRGGHGGVAGPSANRFGHVSPTTAQHVREEFGDSVH-----VLDGGAAEVGIE 188

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           STI+++       +LRPG +  + +   +     L    D T+ P++ G LK+HYAPR+ 
Sbjct: 189 STILDL-SRGFPALLRPGHVTPQQIAAVLGTVPRLPDGSDATA-PRASGTLKAHYAPRTP 246

Query: 236 VRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
           + L            A       AL+   +   ++   AI    ++     +  A  L++
Sbjct: 247 LALLPFDRLELLLDAAAEAGEPVALVARASS-ARDWSTAIGVHFVAAPEDPQAYARELYS 305

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            ++  D +  + I    +P+    +A+N+RL RAAA   Q 
Sbjct: 306 LLRALDRAQVTRILIEQLPDTAEWVAVNDRLGRAAAAFEQG 346


>gi|300175748|emb|CBK21291.2| unnamed protein product [Blastocystis hominis]
          Length = 364

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 174/358 (48%), Gaps = 46/358 (12%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+  T  N L  +    + GL ++ PTETVYGL  ++ N  A+  +++ K RP  +P+I
Sbjct: 7   QILKPTPENFLFCSQVLHNGGL-VSFPTETVYGLGANALNRDAVCDIFKAKNRPFNDPVI 65

Query: 62  CHVSDISMVKKHASV---DPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTA 115
            HV      +++  V   +    H LA  FWPGPLT+V   +   +I P  LS    K  
Sbjct: 66  VHVLSEEDAERYIDVSNEERRIFHSLATSFWPGPLTIV---MKAKEILPKELSAGTGKVG 122

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL-IIDGG--I 171
            FR P     ++L+   G P+A PSAN+ G IS T  +H+ S     + P+ IIDGG  +
Sbjct: 123 -FRCPSQPLARELLRVSGLPIAAPSANKFGHISPTRAEHVYSD--LSDWPVQIIDGGDIV 179

Query: 172 SKIGLESTIVNVQCEK-KVRILRPGG---------LEIETLKRAISVELEYCVDETSTPQ 221
             +G+EST++ + CEK ++ + R GG         L+   +  ++   +++   E    Q
Sbjct: 180 CDVGIESTVIGIDCEKQQIVLFRRGGVSEHAIMSCLQENGMAWSVWEPVKHVAMEMKEAQ 239

Query: 222 -SPGMLKSHYAPRSQVRLRAIHVNPREAL-------------IRFGNVPIKNIENAIISL 267
            +PG L +HYAP     L    V+P+  +             + F  +     E  +  L
Sbjct: 240 VAPGQLITHYAPYCDTFL--AEVDPKAMMPQIVRERIESTVVLDFAGMLEGYRERCLKFL 297

Query: 268 NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAAPR 322
           +LS+ G + EA  N++  ++ A+   G   I  +S+      L +++ +R+ RA + +
Sbjct: 298 SLSEKGDVMEAMKNIYGKLREAERVEGVKLILLASLGQRKEELALSVMDRMVRATSGK 355


>gi|172061583|ref|YP_001809235.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6]
 gi|171994100|gb|ACB65019.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6]
          Length = 342

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 151/323 (46%), Gaps = 40/323 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P     L
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADAQAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY-----GH-PLA 136
              FWPGPLTL+L   +   I    +    +   R P     + L+  +     GH  +A
Sbjct: 87  IDAFWPGPLTLILKRHAR--IPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVA 144

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LRPG 
Sbjct: 145 APSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRPGH 201

Query: 197 LE----IETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           +      + L RA    L    D T+ P++ G LK+HYAPR+ + L      P +AL   
Sbjct: 202 VTPRQIADVLGRA--PRLPDGGDATA-PRASGTLKAHYAPRTPLSLL-----PFDALEPL 253

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGASSI 297
                 + E   +    S+ G+  +A               A +L+  ++  D +  + I
Sbjct: 254 LAAAQTDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARI 313

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
               +P     IA+N+RL RAAA
Sbjct: 314 LVEKLPETVEWIAVNDRLGRAAA 336


>gi|123473197|ref|XP_001319788.1| Sua5/YciO/YrdC/YwlC family protein [Trichomonas vaginalis G3]
 gi|121902579|gb|EAY07565.1| Sua5/YciO/YrdC/YwlC family protein [Trichomonas vaginalis G3]
          Length = 350

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 140/302 (46%), Gaps = 24/302 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    L  A + ++AG  +A PTETVYGL        A+ +++  K RP  +PLI H + 
Sbjct: 7   TSEEDLTIAAKQINAGGLVAFPTETVYGLGAHLEE-KALAQIFAAKHRPYSDPLITHFAT 65

Query: 67  ISMVKKHASV-DPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
               KK+  + D  S +  KL   FWPGP+TLV    +T  + PL  A       RVP  
Sbjct: 66  AEAAKKYLILTDEESANFDKLAAAFWPGPMTLVAP--ATKAVPPLVMAGTGCVGVRVPSH 123

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               + +E  G P+A PSAN  G +S T   H++         L+I GG + IG+EST++
Sbjct: 124 PIAHRFLEICGEPVAAPSANLFGHVSPTTCDHVMYDLGQTPDLLVISGGNATIGIESTVL 183

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL- 238
            +   K + +LRPG +    +++ I  SV  +  V E     SPG    HYAP     L 
Sbjct: 184 RLHG-KNITVLRPGFITAGQVEQVIPGSVTRDAGVQEKLA--SPGHETRHYAPNMPTYLV 240

Query: 239 ----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                     + + + P   LI F           +   +LS  G + +A  N++N ++ 
Sbjct: 241 RKQGSKDAVEQTVSLTPDTVLIDFNRTFSTASSQVLRYFDLSPVGNVADAVRNVYNVLRD 300

Query: 289 AD 290
           A+
Sbjct: 301 AE 302


>gi|239818049|ref|YP_002946959.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110]
 gi|239804626|gb|ACS21693.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110]
          Length = 333

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 163/338 (48%), Gaps = 29/338 (8%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+     +A+ +A   L AG  +A PTETVYGL  D+ +  A+  +++ K RPA +PLI 
Sbjct: 2   ILDGQSPDAIAEAVRVLRAGGLVAFPTETVYGLGADATSDMAVAGIFKAKGRPADHPLIV 61

Query: 63  HVS----DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           HV+        + + A  + P +  L + FWPGPLTL+  +     +   +     T   
Sbjct: 62  HVAAGIKGTEALSRFAQPLPPFAQKLVQAFWPGPLTLI--VTRQPGVAAAAAGGQDTIGL 119

Query: 118 RVPCG-FTKKLIET---YGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           R P     + L+E     G P LA PSANR G++S T  +H+       +   +IDGG  
Sbjct: 120 RCPSHPVAQALLEACAEQGVPGLAGPSANRFGRVSPTTAQHVHDE--FGDALTVIDGGAC 177

Query: 173 KIGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHY 230
           ++G+ESTIV+  C +   + LRPG +    ++ A    L    V ET  P++ G L++HY
Sbjct: 178 EVGIESTIVD--CSRGAPVLLRPGLITRAQIEAAAGERLSNREVLETPDPRASGTLEAHY 235

Query: 231 APRSQVRL---RAIH-----VNPREALIR-FGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           AP +++RL   +AI      + P  A I  +    +++    ++   +        +A  
Sbjct: 236 APNAKLRLMDAKAIQAGLDVLGPGAAHIAVWTRAEVRSHSQRVLQRRMPD--DAAASAHQ 293

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           LF  ++  D  G   I   + P+      + +RL RA+
Sbjct: 294 LFAVLREFDAEGVKLIWVETPPDTPEWEGVRDRLHRAS 331


>gi|188591315|ref|YP_001795915.1| hypothetical protein RALTA_A0528 [Cupriavidus taiwanensis LMG
           19424]
 gi|170938209|emb|CAP63195.1| conserved hypothetical protein, Sua5/YciO/YrdC/YwlC family;
           putative double-stranded RNA binding domain [Cupriavidus
           taiwanensis LMG 19424]
          Length = 329

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 16/320 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP A+ R++ +K RP+ +P+I HV D + + 
Sbjct: 11  LDEAVRLLEAGQLVAFPTETVYGLGADAENPAAVGRIFALKGRPSNHPVIVHVVDGADIG 70

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCGFTKKL 127
                 P +   L   FWPGPLTL+L   +  D        +  L+     V      + 
Sbjct: 71  YWTDDVPAAAQQLIDAFWPGPLTLILKRAAHIDAAVAGGQDSIGLRCPSHPVAQALLSRF 130

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QCE 186
               G  +A PSAN+ GQ+S T  +H+       +   +++G   ++G+ESTIV++ + +
Sbjct: 131 KRGRGG-IAAPSANKFGQVSPTTAQHVREE--FGDAVYVLEGDGVEVGIESTIVDLSRLD 187

Query: 187 KKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
           + +   +LRPG + +  L + +  E     D  +   S G LK+HYAP + + L      
Sbjct: 188 QGIGPVLLRPGAVTVGMLAQVLG-EAPLPPDAAAPRAS-GTLKAHYAPHTPLLLADAQAA 245

Query: 245 PREALIRFGNVPIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
                    +  +  +  A ++      +   G     A  L+  ++  D  G + + F 
Sbjct: 246 AARLEALPADARVAWVGRAPLADQRCTWVQAPGDAAAYAQELYRLLRKLDRQGYTQLVFE 305

Query: 301 SIPNHGLGIAINNRLERAAA 320
            +P       + +RLERAAA
Sbjct: 306 VLPEGQDWAGVRDRLERAAA 325


>gi|157871880|ref|XP_001684489.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127558|emb|CAJ05637.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 386

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 44/335 (13%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    LR+A + L  G  +AIPTETVYGL  ++   +A++ +Y +K RP  +PLICHV  
Sbjct: 7   TSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPLICHVYT 66

Query: 67  ISMV------KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +         K       L+  +    WPGPLT+V     T  +    T        R+P
Sbjct: 67  LDGACRLWDQKWDEGAVELACTIGAALWPGPLTIVCKANPT--LPDCVTGGSGYVGARIP 124

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLES 178
                 KL+E    P+A PSAN  G +S T  +H+      ++   LIIDGG S IG+ES
Sbjct: 125 NNPVALKLLEMVDAPVAAPSANTFGHVSPTTAQHVYDDLAARDPELLIIDGGQSAIGIES 184

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELE----YCVDETSTPQSPGMLK 227
           T+  V+ +  V +LR G + +  + RAI+       VE+      C    +   SPG L 
Sbjct: 185 TVAKVESKDLVVVLRRGCITVSMIHRAIAGRYPQTRVEIRDTRIMCDPAKALMVSPGQLL 244

Query: 228 SHYAPRSQVRL--------------------RAIHVNPR-EALIRFGNVPIKNIENAIIS 266
           +HY+P     L                    R   V P  E ++   N  +   ++A +S
Sbjct: 245 THYSPHVPSSLLTPGSLGALTASADVPVYVHRGKDVVPLCETIVLDFNGYLSRFKDACLS 304

Query: 267 L-NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF 299
             ++S  G  +E  + +F+ ++  +   GA  + F
Sbjct: 305 YHDMSPDGNPEEGCYAVFDALRATETVKGAKGLVF 339


>gi|299136790|ref|ZP_07029973.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8]
 gi|298601305|gb|EFI57460.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8]
          Length = 343

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 167/337 (49%), Gaps = 31/337 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A + L +G  +A  TETVYGL  D+ +  A+ R++E K+RP+ +PLI H++  
Sbjct: 10  DPGDVSRAADLLRSGGTVAFATETVYGLGADALSEAAVARIFEAKQRPSWDPLIVHLASA 69

Query: 68  SMVKKHASVDP-----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC 121
           + +    +V+      ++L LA+ FWPGPLTL   LL    + P S TA       RVP 
Sbjct: 70  TEISSITNVEGELQRRVNL-LAETFWPGPLTL---LLPRKVVVPDSVTAGRPLVGVRVPS 125

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L++  G P+A PSAN  G  S T   H+L + +   I  ++D G + +GLEST+
Sbjct: 126 HPAALALLQAAGLPIAAPSANTFGHTSPTTAAHVL-ADLEGRIDAVLDAGPTSVGLESTV 184

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQ------SPGMLKSHYAPR 233
           ++   +  + + RPG +  E +  A  V +E + V   ST Q      SPG+   HYAPR
Sbjct: 185 LD-PAQTPMVLYRPGAVTAEQIAAATGVPVEIFRVAGMSTAQPKESLPSPGVGIRHYAPR 243

Query: 234 SQVRL-----RAIHVNPREALIRFGN-----VPIKNIENAIISLNLSKTGKLKEAAFNLF 283
           +++ L      A+    RE L + G      +P     +A+  +      + + A     
Sbjct: 244 ARLILVEGSEEALRQTLREVLSQGGERVGVLLPDGWRLDAVALVEPWAAWEDQAALAAAL 303

Query: 284 NYMKIADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319
                A D   ++I    +P + GL  AI +RLE+AA
Sbjct: 304 FAGLRALDDRGATIILCPLPLSGGLKDAIRDRLEKAA 340


>gi|189911316|ref|YP_001962871.1| SUA5 family translation factor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775992|gb|ABZ94293.1| Translation factor, SUA5 family [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 338

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 165/349 (47%), Gaps = 57/349 (16%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ +R   + +  G  +  PTETV+G+   S N  A  R+Y+IK RP+ NPLI H S I 
Sbjct: 6   SSDVRLLADLIRKGGVVVFPTETVFGIGAASDNEDACLRIYQIKGRPSDNPLIAHFSSID 65

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCG-FTK 125
            +KK   V+ ++  L   F PGP TLV   L  TD  I P     L T   R+P     +
Sbjct: 66  AIKKVCYVNEVANQLLCEFSPGPFTLV---LPKTDPKIFP---KQLPTLAVRIPKNPVIR 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIV 181
           + IE  G P++ PSAN SG+ S+T +     + + +    I+DG +      +G+EST++
Sbjct: 120 EWIEACGSPISAPSANLSGRPSLTRM-----TDVVRYFDGIVDGILIAEEPNLGIESTVL 174

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI-------------SVELEYCVDETSTPQSPGMLKS 228
            +  E  V +LRPG +E + L+R +             S   +   +++  P SPGM   
Sbjct: 175 GLTTEVPV-LLRPGSIESQALRRFLPNLVIPNEIKSKDSKSEDSKTNQSFVPLSPGMKYK 233

Query: 229 HYAPRSQVRLRAIHV----------NPREALI--RFGNVPIKNIENA----IISLNLSKT 272
           HYAP ++V L    +          +P+ A I   FG+  +  +        ++ N+   
Sbjct: 234 HYAPNAKVVLLETEIFLSTFSKQGMDPKFAWIGFSFGSKTLPEVLGGNRVLCVANNIDYM 293

Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320
            K       L+ + +  D  G + I +  +P    G   + NRLE+AAA
Sbjct: 294 AK-------LYAFFESCDLEGYNRI-YCEMPREEEGREGLLNRLEKAAA 334


>gi|221200181|ref|ZP_03573224.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2M]
 gi|221206666|ref|ZP_03579678.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2]
 gi|221173321|gb|EEE05756.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2]
 gi|221180420|gb|EEE12824.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2M]
          Length = 342

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 152/325 (46%), Gaps = 44/325 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H+         A+  P     L
Sbjct: 27  VAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWAAELPADAQKL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY-----GH 133
              FWPGPLTL+L        HP      +    +   R P     + L+  +     GH
Sbjct: 87  IDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGH 140

Query: 134 -PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +L
Sbjct: 141 GGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALL 197

Query: 193 RPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           RPG +  + +   +  +  L    D T+ P++ G LK+HYAPR+ + L      P +AL 
Sbjct: 198 RPGHVTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALE 251

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGAS 295
                   + E   +    S+ G+  +A               A +L+  ++  D +  +
Sbjct: 252 PLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVA 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I    +P     IA+N+RL RAAA
Sbjct: 312 RILVEKLPETVEWIAVNDRLGRAAA 336


>gi|161523856|ref|YP_001578868.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC
           17616]
 gi|189351383|ref|YP_001947011.1| putative translation factor [Burkholderia multivorans ATCC 17616]
 gi|160341285|gb|ABX14371.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC
           17616]
 gi|189335405|dbj|BAG44475.1| putative translation factor [Burkholderia multivorans ATCC 17616]
          Length = 342

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 152/325 (46%), Gaps = 44/325 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H+         A+  P     L
Sbjct: 27  VAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWAAELPADAQKL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY-----GH 133
              FWPGPLTL+L        HP      +    +   R P     + L+  +     GH
Sbjct: 87  IDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGH 140

Query: 134 -PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +L
Sbjct: 141 GGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALL 197

Query: 193 RPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           RPG +  + +   +  +  L    D T+ P++ G LK+HYAPR+ + L      P +AL 
Sbjct: 198 RPGHVTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALE 251

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGAS 295
                   + E   +    S+ G+  +A               A +L+  ++  D +  +
Sbjct: 252 PLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVA 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I    +P     IA+N+RL RAAA
Sbjct: 312 RILVEKLPETVEWIAVNDRLGRAAA 336


>gi|242241522|ref|ZP_04795967.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           W23144]
 gi|242235065|gb|EES37376.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           W23144]
          Length = 347

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 13/223 (5%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76
           FLD GL +AIPTETVYGL  ++RN  A+  +Y  K RP+ NPLI H+  I  +      +
Sbjct: 28  FLDGGL-VAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLDDFVEHI 86

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
           D     L   FWPGP++ +L L     +    T  L++   R+P     + L++    P+
Sbjct: 87  DDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQIVDEPI 145

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+ S T  +H+ +  +  ++  I++G   + GLEST+++   +   RI RPG
Sbjct: 146 AAPSANISGRPSPTTFEHV-NRDLNGKVNGIVNGDQCEEGLESTVIDC-TQFPFRIARPG 203

Query: 196 GLE---IET-LKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
            +    IET L  +I+ ++    +E   P +PGM   HY+P +
Sbjct: 204 SITQDMIETKLPHSINRQI---YEENEKPIAPGMKYKHYSPET 243


>gi|319399598|gb|EFV87853.1| SUA5 domain protein [Staphylococcus epidermidis FRI909]
          Length = 347

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 7/220 (3%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76
           FLD GL +AIPTETVYGL  ++RN  A+  +Y  K RP+ NPLI H+  I  +      +
Sbjct: 28  FLDGGL-VAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLDDFVEHI 86

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
           D     L   FWPGP++ +L L     +    T  L++   R+P     + L++    P+
Sbjct: 87  DDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQIVDEPI 145

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+ S T  +H+ +  +  ++  I++G   + GLEST+++   +   RI RPG
Sbjct: 146 AAPSANISGRPSPTTFEHV-NRDLNGKVNGIVNGDQCEEGLESTVIDC-TQFPFRIARPG 203

Query: 196 GLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRS 234
            +  + ++  +   +   + +E   P +PGM   HY+P +
Sbjct: 204 SITQDMIESRLPHSINRQIYEENEKPIAPGMKYKHYSPET 243


>gi|302414222|ref|XP_003004943.1| SUA5 [Verticillium albo-atrum VaMs.102]
 gi|261356012|gb|EEY18440.1| SUA5 [Verticillium albo-atrum VaMs.102]
          Length = 414

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 108/201 (53%), Gaps = 23/201 (11%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS--- 80
           P  +P ETVYGL  D+    A++ +Y  K RP+ NPLI HVSD++M+++  +  P S   
Sbjct: 188 PRRLPDETVYGLGADATRSAAVKGIYAAKGRPSDNPLIIHVSDLTMLRRFLAPPPPSDTP 247

Query: 81  -----------------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
                              L + FWPGPLT++L L S + + P  TA L T   R+P   
Sbjct: 248 DAVVTAAAAADPIPAIYKPLLERFWPGPLTILLPLPSPSPLAPEVTAGLPTFAVRMPASP 307

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               LI     PLA PSAN S + S T  +H+L   +   I LI+D G   +G+EST+V+
Sbjct: 308 LALSLIALADTPLAGPSANASTKPSPTAARHVL-DDLAGRIELILDAGPCDVGVESTVVD 366

Query: 183 VQCEKKVRILRPGGLEIETLK 203
             C+  V ILRPGG+ ++ L+
Sbjct: 367 GLCDPPV-ILRPGGIALDRLR 386


>gi|145589991|ref|YP_001156588.1| Sua5/YciO/YrdC/YwlC family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048397|gb|ABP35024.1| translation factor SUA5 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 362

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 162/357 (45%), Gaps = 56/357 (15%)

Query: 7   TDSNALR------KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +DS AL+      +A + L  G  +A PTETVYGL  D++NP AI++++  K RP+ +PL
Sbjct: 3   SDSTALQSSVVINEAVQSLRDGGLVAFPTETVYGLGADAKNPEAIKKIFSTKGRPSNHPL 62

Query: 61  ICHVS-----DISMVKKHASVDPL-------SLHLAKLFWPGPLTLVLDLLSTTDIHPLS 108
           I H++     D + V     + P        +L L   FWPGPLTLV     +  ++ L 
Sbjct: 63  IVHLAAPDRFDQAQVDWVPVLAPWVRDLSEDALKLINAFWPGPLTLVFKKDKSV-LNEL- 120

Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT---NVKHILSSSICKEIP 164
           T    T   R P     ++L+  +   +  PSANR G++S T   +V+H     +     
Sbjct: 121 TGGQDTVAIRAPAHPIAQELLRKFKGGVVAPSANRFGKVSPTSAADVRHEFEGVLDL--- 177

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTP 220
           +++DGG  ++G+ESTI+++    +  +LRPG +    +     + +    E   +    P
Sbjct: 178 MVLDGGDCEVGIESTIIDLSSGDRAILLRPGVITPSVILAKTGIRVYQPGEVFSETELLP 237

Query: 221 QSPGMLKSHYAPRSQVRLR-------------------AIHVNPREALIRFGNVPIKNIE 261
           +  G LK+HYAP + +RL                    A+ V   E+ +     P+ + E
Sbjct: 238 KVSGSLKAHYAPTTPLRLYASGRVLDALSEFPDTKSRVAVAVWDSESSLSHDGYPLVHFE 297

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
             +I  + +        A  L+  ++  D      I F   P       + +RL+RA
Sbjct: 298 EVVIPSDSATF------ASRLYRSLRDLDQQDWDLILFPEPPVGEEWDGVRDRLQRA 348


>gi|150020136|ref|YP_001305490.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis
           BI429]
 gi|149792657|gb|ABR30105.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis
           BI429]
          Length = 335

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 155/330 (46%), Gaps = 16/330 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           ++I +++D + +   C+ + +G  +A PTETVYGL   + N  A+ +++++K R   NPL
Sbjct: 6   LKIKTLSDID-ISYPCKVIKSGGLVAFPTETVYGLGASASNGEAVDKIFKVKGRAKDNPL 64

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+ +  + +   V+     + +   PGP+T V+   ++   +   TA+L T   R+P
Sbjct: 65  IVHVAFVDTLYEIGEVNEKYRKVIEQITPGPITFVIRKKASFPKN--VTASLNTVGVRIP 122

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                + +  Y  P+A PSAN SG+ S T+   ++     K I  IID G +  G+ESTI
Sbjct: 123 AHPVARKLCEYAGPIAAPSANLSGKPSPTDASAVIEDLFGK-IECIIDAGNTPFGIESTI 181

Query: 181 VNVQCEKKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           +++  +  + ILRPG + IE L       I  +         TP++PGM   HYAP   V
Sbjct: 182 IDLSGDIPI-ILRPGPITIEKLHELFGEVIIPDFVKNAKTVETPKAPGMKYRHYAPEKPV 240

Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                  R + I +  +E  +       K      + + L         A NLF  ++  
Sbjct: 241 YIFERKNRKKIIEIAHKEKGVILCPKEHKRFYPGDMVVVLGSLENPYTIAQNLFRLLRQI 300

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           D           +   G+  ++ NRL++A 
Sbjct: 301 DKMDFQIAYVEKLEERGILFSVMNRLKKAG 330


>gi|295397093|ref|ZP_06807205.1| Sua5/YciO/YrdC/YwlC family protein [Aerococcus viridans ATCC 11563]
 gi|294974685|gb|EFG50400.1| Sua5/YciO/YrdC/YwlC family protein [Aerococcus viridans ATCC 11563]
          Length = 341

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 122/245 (49%), Gaps = 19/245 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++ + +    L  G  +A PTETV+GL   + N  A++ +Y +K RP+ NPLI H++
Sbjct: 4   IIQASEIDEGAALLQDGQLVAFPTETVFGLGAIANNADAVKSVYTVKGRPSDNPLIVHIA 63

Query: 66  DIS-----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119
           D       M+        L   L   FWPGPLTLV+ +    D  P + T  + T   R+
Sbjct: 64  DPEDIFDYMIDNDPERHDLIEKLTTQFWPGPLTLVVPV--KPDTFPSVVTGGMDTVGIRL 121

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+ LI   G P+  PSAN SG+ S T V H++       I  +++   ++IG+ES
Sbjct: 122 PDHETTRDLIRATGFPIVGPSANISGKPSPTQVAHVM-HDFDGVIGGVVNAEPTRIGVES 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC-------VDETSTPQSPGMLKSHYA 231
           T++++   + + ILRPG +    L   ++    Y         DE   P++PGM   HY+
Sbjct: 181 TVLDLTDSRGLIILRPGYITKTMLAEVVTGMPIYIGGTIANNADE--APKAPGMKYVHYS 238

Query: 232 PRSQV 236
           P   V
Sbjct: 239 PNQPV 243


>gi|241662102|ref|YP_002980462.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D]
 gi|240864129|gb|ACS61790.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D]
          Length = 337

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 14/235 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI ++Y  K RP+ +P+I HV D + + 
Sbjct: 17  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIAKIYAAKGRPSNHPVIVHVVDGADIS 76

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A   P ++L L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 77  YWADDVPGIALQLIEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 134

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTI+++ + 
Sbjct: 135 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIIDLSRL 192

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           ++ +   +LRPG +  E ++R ++ EL    D  +   S G LK+HYAPR+ + L
Sbjct: 193 DQGIGPVLLRPGAITPEDIER-VTGELPAAPDAAAPRAS-GTLKAHYAPRTPLYL 245


>gi|145478343|ref|XP_001425194.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392263|emb|CAK57796.1| unnamed protein product [Paramecium tetraurelia]
          Length = 425

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 159/337 (47%), Gaps = 60/337 (17%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L  A + L  G  +A PTETVYGL  +++N  AI  +++ KKRP  +PLI HV D + 
Sbjct: 54  DELHIAAQLLHQGELVAFPTETVYGLGANAKNAQAILNIFKAKKRPLSDPLIVHVHDKNN 113

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLD--LLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
           +  +          A+LFWPGP T+VL    L TT+I    T ++     R+P      +
Sbjct: 114 I--YTDKPDFLDSFAELFWPGPFTIVLKSTQLETTEILSAGTGSI---GIRIPNHKVALE 168

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    P+A PSAN    IS T+  H+ +    + +  IID G S  G+EST++     
Sbjct: 169 LLEKANLPVAAPSANLFTHISPTSAAHVFNDFYDQRVH-IIDAGRSDNGIESTVIK-PLG 226

Query: 187 KKVRILRPGGLEIETLKR-----------AISVELEY------------------CVDET 217
            ++ ILR G L  ET+ +           AI  E +Y                   ++  
Sbjct: 227 NELHILRLGSLAKETIMKKIGQSDKLKHFAIKYENKYMQIEETEEDIEKELEELNVLERK 286

Query: 218 STPQSPGMLKSHYAPR---------SQVRLRAIHVNPREA-LIRFGNVPIKNIENAIISL 267
           ++ ++PG    HY+ R         S    + I ++ +E+ +I FG+     ++N I  L
Sbjct: 287 NSMEAPGQFLKHYSARINSFIVTFQSNTIGQQIDLDLKESVIIDFGS----ELKNRIADL 342

Query: 268 N------LSKTGKLKEAAFNLFNYMKIAD-DSGASSI 297
           +      LS+    KEA FNL++ ++ A+   GA  I
Sbjct: 343 DEIKYKSLSENYDAKEAMFNLYDSLRWAELQQGAKQI 379


>gi|73662077|ref|YP_300858.1| translation factor [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494592|dbj|BAE17913.1| putative translation factor [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 347

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 15/228 (6%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           F + GL IAIPTETVYGL  D+RN  AI+ +Y  K RP+ NPLI H+  +  ++  A  D
Sbjct: 28  FENGGL-IAIPTETVYGLGADARNEAAIKHIYSAKGRPSDNPLIVHIYKVEQIQ--AFTD 84

Query: 78  PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            LS  +  L   FWPGP++ ++ L        +S   L +   R+P     +++++    
Sbjct: 85  KLSKEVEMLMNEFWPGPISFIVPLKKGYLCESVS-GGLDSIAVRMPSHPIGRQILKYVDM 143

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK-KVRIL 192
           P+A PSAN SG+ S T  +H+    +   I  I++G  S+ GLEST+++  C +   +I 
Sbjct: 144 PIAAPSANLSGRPSPTTFEHVY-RDLDGRIDGIVNGDQSEEGLESTVLD--CTRFPFKIA 200

Query: 193 RPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           RPG +    ++  I  SV     +D +  P +PGM   HY+P + V++
Sbjct: 201 RPGSITKSMIEAVIPDSVTTIGTLD-SEKPIAPGMKYKHYSPDTPVKI 247


>gi|222152013|ref|YP_002561173.1| hypothetical protein MCCL_1770 [Macrococcus caseolyticus JCSC5402]
 gi|222121142|dbj|BAH18477.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 334

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 151/314 (48%), Gaps = 25/314 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
             AG  IAIPTETVYGLA D+ N  A+  +++ K RP  NPLI H+  +S ++     + 
Sbjct: 28  FKAGETIAIPTETVYGLAADATNREAVAAIFKAKGRPQDNPLIVHIHHLSQLEWFTHDIH 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
             +  L   FWPGP++ ++ +        + TA L T   R+P      +LIE     LA
Sbjct: 88  AAAYKLMDYFWPGPISFIVPVKQGILAESV-TAGLNTVAVRMPAHKVAHQLIEMTDLLLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T  +H++     K I  I+     ++G+EST+V+   +   RI RPG 
Sbjct: 147 APSANTSGKPSPTKAEHVIHDMEGK-IFGIVQSEQVEVGIESTVVDC-SQYPFRIARPGA 204

Query: 197 LEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRL----RAIHVNPREA 248
           +    L+  +      C+ +       P +PGM   HYAP S + L     ++ +   EA
Sbjct: 205 ITHNDLEMVVPG----CISDERIMGDKPIAPGMKYRHYAPDSPLELVEHFESLELAANEA 260

Query: 249 LIRFGNVPI--KNIENAIISLNLSKTGKLKEAA-FNLFNYMKIADD-SGASSIAFSSIPN 304
           +I     P+  K+  N      L  T +    A ++L++ ++ AD   G   I  +   +
Sbjct: 261 VI----APLSEKHKVNGGWFFKLGTTYEDSGGAMYDLYDALRSADSIEGIEKIYITDFTS 316

Query: 305 HGLGIAINNRLERA 318
           +    A+ NR+ +A
Sbjct: 317 YNGSDALMNRINKA 330


>gi|134296828|ref|YP_001120563.1| translation factor SUA5 [Burkholderia vietnamiensis G4]
 gi|134139985|gb|ABO55728.1| translation factor SUA5 [Burkholderia vietnamiensis G4]
          Length = 345

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 149/322 (46%), Gaps = 44/322 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A+  P     L
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWAADVPADARAL 86

Query: 84  AKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY-----GH 133
              FWPGPLTL+L        HP      +    +   R P     + L+  +     GH
Sbjct: 87  IDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGH 140

Query: 134 -PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             +A PSANR G +S T  +H+       +   ++DGG S++G+ESTIV++       +L
Sbjct: 141 GGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTIVDL-SRGFPALL 197

Query: 193 RPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           RPG +  + +   +  +  L    D T+ P++ G LK+HYAPR+ + L      P +AL 
Sbjct: 198 RPGHVTPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDALE 251

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGAS 295
                   + E   +    S+ G+  +A               A +L+  ++  D +  +
Sbjct: 252 PLLAAAQADGERVALVARASRAGRWAQADGVHFIAAPEDPHAYARDLYGMLRALDRAQVA 311

Query: 296 SIAFSSIPNHGLGIAINNRLER 317
            I    +P     IA+N+RL R
Sbjct: 312 RILVEKLPETVEWIAVNDRLGR 333


>gi|183221225|ref|YP_001839221.1| putative translation factor SUA5 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167779647|gb|ABZ97945.1| Putative translation factor SUA5 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 318

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 158/333 (47%), Gaps = 57/333 (17%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PTETV+G+   S N  A  R+Y+IK RP+ NPLI H S I  +KK   V+ ++  L 
Sbjct: 2   VVFPTETVFGIGAASDNEDACLRIYQIKGRPSDNPLIAHFSSIDAIKKVCYVNEVANQLL 61

Query: 85  KLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
             F PGP TLV   L  TD  I P     L T   R+P     ++ IE  G P++ PSAN
Sbjct: 62  CEFSPGPFTLV---LPKTDPKIFP---KQLPTLAVRIPKNPVIREWIEACGSPISAPSAN 115

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVRILRPGGL 197
            SG+ S+T +     + + +    I+DG +      +G+EST++ +  E  V +LRPG +
Sbjct: 116 LSGRPSLTRM-----TDVVRYFDGIVDGILIAEEPNLGIESTVLGLTTEVPV-LLRPGSI 169

Query: 198 EIETLKRAI-------------SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV- 243
           E + L+R +             S   +   +++  P SPGM   HYAP ++V L    + 
Sbjct: 170 ESQALRRFLPNLVIPNEIKSKDSKSEDSKTNQSFVPLSPGMKYKHYAPNAKVVLLETEIF 229

Query: 244 ---------NPREALI--RFGNVPIKNIENA----IISLNLSKTGKLKEAAFNLFNYMKI 288
                    +P+ A I   FG+  +  +        ++ N+    K       L+ + + 
Sbjct: 230 LSTFSKQGMDPKFAWIGFSFGSKTLPEVLGGNRVLCVANNIDYMAK-------LYAFFES 282

Query: 289 ADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320
            D  G + I +  +P    G   + NRLE+AAA
Sbjct: 283 CDLEGYNRI-YCEMPREEEGREGLLNRLEKAAA 314


>gi|282917465|ref|ZP_06325218.1| translation factor [Staphylococcus aureus subsp. aureus D139]
 gi|283771284|ref|ZP_06344173.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus H19]
 gi|282318667|gb|EFB49024.1| translation factor [Staphylococcus aureus subsp. aureus D139]
 gi|283459489|gb|EFC06582.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus H19]
          Length = 357

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 38  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 97  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S TN  H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 156 APSANLSGRPSPTNFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252


>gi|329729335|gb|EGG65743.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 348

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + Y   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITEILPNSIAYADYNDTEQPIAPGMKYKHYSPNT 243


>gi|325192804|emb|CCA27207.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 370

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 175/364 (48%), Gaps = 42/364 (11%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M +++  D+ ALR A   L +G  +A PTETVYGL  ++ +  A+  +++ K RP  +PL
Sbjct: 1   MAVLARFDAVALRDAAIQLKSGHLVAFPTETVYGLGANALDAEAVSLIFQAKGRPLTDPL 60

Query: 61  ICHVSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I HV+     + +++  A    L   L++ FWPGPLT++    ++  I PL TAN     
Sbjct: 61  IVHVAKAEDALPLIQLTAKGHKLFSILSEKFWPGPLTIIAP--ASDRIPPLVTANTGFVG 118

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGG--IS 172
            R P      +L++    P+A PSANR G +S T  +H+++    C  + ++ D     S
Sbjct: 119 VRCPAHPVALELLQAAKIPIAAPSANRFGHVSPTCAQHVMNDLGHCANLTVLDDSNEETS 178

Query: 173 KIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAI-----SVELEYCV-------DETST 219
           ++G+EST++  V    +V I R GG   + L   +      +E  Y V        E+S 
Sbjct: 179 RVGIESTVIRIVPSMDQVWIYRRGGTSEDALSSVLQENQKQLEATYTVIVKANTTSESSA 238

Query: 220 --PQSPGMLKSHYAPRSQVRLRAI-------------HVNPREALIRFGNVPIKNIE-NA 263
              ++PG L  HYAP  +  L  I               +  E +I   N  +   E  +
Sbjct: 239 KNQEAPGQLLKHYAPDVETHLIQICSDSNQNCALLTAEFDLAECVILDVNRQLAPFEAKS 298

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAA 320
           +   +LSK G + +A+  +F  ++ ++    A  +  + I +  H    A+ +R+ RAA+
Sbjct: 299 LAYRDLSKDGDITKASQLIFEALRWSESVPKAKKVLMADIEHISHQHTAALRDRMFRAAS 358

Query: 321 PRNQ 324
            + Q
Sbjct: 359 GKVQ 362


>gi|187927597|ref|YP_001898084.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J]
 gi|187724487|gb|ACD25652.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J]
          Length = 337

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 163/325 (50%), Gaps = 26/325 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ +P+AI ++Y  K RP+ +P+I HV D + + 
Sbjct: 17  LDEAARRLEAGELVAFPTETVYGLGADAESPSAIAKIYAAKGRPSNHPVIVHVVDGADIS 76

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A   P ++L L + FWPGPLTL+L       I         +   R P     + L+ 
Sbjct: 77  YWADDVPGIALQLIEAFWPGPLTLILK--RAPHIPAAVAGGQDSIGLRCPSHPVAQALLS 134

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV-QC 185
            +      +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTI+++ + 
Sbjct: 135 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDE--FGDAVFVLEGDGVDVGIESTIIDLSRL 192

Query: 186 EKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           ++ +   +LRPG +  E ++R ++ EL    D  +   S G LK+HYAPR+ + L    +
Sbjct: 193 DQGIGPVLLRPGAITPEDIER-VTGELPAAPDAAAPRAS-GTLKAHYAPRTPLYL----L 246

Query: 244 NPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEA-----AFNLFNYMKIADDSGAS 295
           +  +   R   +P         A ++L      ++  A     A  L+  ++  D  G  
Sbjct: 247 SAADVSARLAALPADKRIVWLGAPVALRDGCDQRVAPATPAAYANALYALLRELDRGGYD 306

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
           +I   ++ +     A+N+RL RAAA
Sbjct: 307 AIWVETLADTPAWAAVNDRLRRAAA 331


>gi|94500117|ref|ZP_01306651.1| hypothetical protein RED65_13317 [Oceanobacter sp. RED65]
 gi|94427690|gb|EAT12666.1| hypothetical protein RED65_13317 [Oceanobacter sp. RED65]
          Length = 352

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 160/333 (48%), Gaps = 35/333 (10%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A   L  G  +A+PTETVYGLA D+RN  A+  ++E K RP  +PLI H+++ + ++K
Sbjct: 15  QQAGAILKQGGLVAVPTETVYGLAADARNDIALASIFEAKGRPVDHPLILHIANSTELEK 74

Query: 73  HASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            A   P ++  L + FWPG LTLVL       +  + T  L T   R+P       ++ T
Sbjct: 75  WARDVPHIAQSLVEAFWPGALTLVLK--KAEGVSDILTGGLDTVAIRMPNQPALLDILRT 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV- 189
           +   +A PSAN   ++S T   H++ + + + I  ++DGG  + G+ESTI+++    +  
Sbjct: 133 HELIVAAPSANPYEKLSPTQAHHVM-NGMGELIDAVVDGGACEQGIESTILDISDYPRTS 191

Query: 190 -RILRPGGLEIETLKRAISVELEYCVDET------STPQSPGMLKSHYAPRSQVRLRAIH 242
            R+LRPG +         + ++E  +D+T         +  G  K HY P++ + L    
Sbjct: 192 PRVLRPGPIS--------ASQIEAVLDQTVLQPDNHNEKVSGNKKVHYRPKATLVL--CE 241

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKT------------GKLKEAAFNLFNYMKIAD 290
               +ALIR G   +    + II   L+ +               +  A + ++ +   D
Sbjct: 242 TEQLDALIRNGVAGVFLYHSEIIETALNDSQLHGDQIALRLPADHQGYAQSWYSTLHEVD 301

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
                ++    +PN+     I NR+ RAA   N
Sbjct: 302 CLMPDTVYTECVPNNTEWSGIANRIARAAIELN 334


>gi|82751717|ref|YP_417458.1| hypothetical protein SAB2000c [Staphylococcus aureus RF122]
 gi|82657248|emb|CAI81689.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 348

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L K FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PSVEKLMKAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|160896437|ref|YP_001562019.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1]
 gi|160362021|gb|ABX33634.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1]
          Length = 332

 Score =  112 bits (280), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 31/317 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           + +PTETVYGLA D+ N  A+ +++  K RP  +PLI HV+D   + ++A   PL +  L
Sbjct: 24  LGLPTETVYGLAADADNDAAVAQIFTAKGRPPNHPLIVHVADSGAITRYAREVPLFAQQL 83

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI---------ETYGHP 134
              FWPGPLTL+L  L        ST    +   R P       +           +G  
Sbjct: 84  IDAFWPGPLTLILPRLPQA--ARASTGGQDSVGLRCPSHPVAHAVLAACRQLQPPVWG-- 139

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI-LR 193
           ++ PSAN+ G++S T   H+       +  L++DGG  ++G+ESTIV+  C + V + LR
Sbjct: 140 VSAPSANKFGRVSPTTAAHVADE--FGDTLLVLDGGACEVGIESTIVD--CTRGVPVLLR 195

Query: 194 PGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL-------RAIHVNP 245
           PG +  + ++RA     L     + +TP++ G L +HYAP +QVRL         + V  
Sbjct: 196 PGAITRDDIERACGQRPLSKEELQENTPRASGTLLAHYAPNAQVRLMDARQLQAGLDVLG 255

Query: 246 REA--LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            +A  L  +   P++    A ++L           A  LF  ++  D+ GA  I   + P
Sbjct: 256 ADARNLAVYHRTPLRTASRA-VTLRAMPA-DAAATARELFGALRDFDEVGARLIWIETPP 313

Query: 304 NHGLGIAINNRLERAAA 320
           +      + +RL RAAA
Sbjct: 314 DTPDWEGVRDRLLRAAA 330


>gi|45657585|ref|YP_001671.1| hypothetical protein LIC11719 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600824|gb|AAS70308.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 315

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 164/321 (51%), Gaps = 22/321 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS +  +A + L  G  +  PTETVYG+   + +  A +R+Y++K RP+ NPLI HV+
Sbjct: 10  ITDSTS--EAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVA 67

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           + S +K    +D  +  + +   PGP+T +    +      L TA L +   R+P   T 
Sbjct: 68  NFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQN----LFTAGLDSVAIRIPSNPTA 123

Query: 126 -KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              ++    P+A PSAN SG+ S+T +++IL   I K +  I+ G   +IG+EST+V+  
Sbjct: 124 LGFLKFCKIPVAAPSANFSGKPSLTKIEYILEEFIGK-VDCILKGEEPQIGIESTVVDFI 182

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLR-A 240
            +  + +LRPG ++   L   +  ++    +D+ S  TP SPG+   HY+P  +V  + +
Sbjct: 183 SKPPI-LLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYKHYSPNCKVIFKNS 241

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           +   P+E    F  +      N++  + +S     KE    ++++    D  G +  A+ 
Sbjct: 242 LKGIPKE----FAQIGFHFESNSVYQVLVSSN---KEYMKEIYSFFVECDRRGITE-AWC 293

Query: 301 SIP-NHGLGIAINNRLERAAA 320
            IP        + NR+ +AA+
Sbjct: 294 EIPKEEKWKEVLINRISKAAS 314


>gi|24214909|ref|NP_712390.1| putative translation factor Sua5 [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24195936|gb|AAN49408.1| putative translation factor Sua5 [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 315

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 164/321 (51%), Gaps = 22/321 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS +  +A + L  G  +  PTETVYG+   + +  A +R+Y++K RP+ NPLI HV+
Sbjct: 10  ITDSTS--EAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVA 67

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           + S +K    +D  +  + +   PGP+T +    +      L TA L +   R+P   T 
Sbjct: 68  NFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQN----LFTAGLDSVAIRIPSNPTA 123

Query: 126 -KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              ++    P+A PSAN SG+ S+T +++IL   I K +  I+ G   +IG+EST+V+  
Sbjct: 124 LGFLKFCKIPVAAPSANFSGKPSLTKIEYILEEFIGK-VDCILKGEEPQIGIESTVVDFI 182

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLR-A 240
            +  + +LRPG ++   L   +  ++    +D+ S  TP SPG+   HY+P  +V  + +
Sbjct: 183 SKPPI-LLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYRHYSPNCKVIFKNS 241

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           +   P+E    F  +      N++  + +S     KE    ++++    D  G +  A+ 
Sbjct: 242 LKGIPKE----FAQIGFHFESNSVYQVLVSSN---KEYMKEIYSFFVECDRRGITE-AWC 293

Query: 301 SIP-NHGLGIAINNRLERAAA 320
            IP        + NR+ +AA+
Sbjct: 294 EIPKEEKWKEVLINRISKAAS 314


>gi|49484340|ref|YP_041564.1| hypothetical protein SAR2204 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49242469|emb|CAG41185.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|315193281|gb|EFU23679.1| hypothetical protein CGSSa00_02191 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 348

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|297210063|ref|ZP_06926456.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300910426|ref|ZP_07127878.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|296885263|gb|EFH24203.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300888268|gb|EFK83459.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 357

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 38  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 97  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252


>gi|253731046|ref|ZP_04865211.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257426255|ref|ZP_05602670.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428913|ref|ZP_05605307.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431522|ref|ZP_05607895.1| translation factor [Staphylococcus aureus subsp. aureus 68-397]
 gi|257434231|ref|ZP_05610581.1| translation factor [Staphylococcus aureus subsp. aureus E1410]
 gi|257437144|ref|ZP_05613184.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M876]
 gi|282904785|ref|ZP_06312659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906460|ref|ZP_06314311.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909429|ref|ZP_06317244.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911681|ref|ZP_06319480.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914965|ref|ZP_06322745.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282920294|ref|ZP_06328018.1| translation factor [Staphylococcus aureus subsp. aureus C427]
 gi|282925505|ref|ZP_06333159.1| translation factor [Staphylococcus aureus subsp. aureus C101]
 gi|283958896|ref|ZP_06376341.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293509033|ref|ZP_06667820.1| translation factor [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510948|ref|ZP_06669647.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M809]
 gi|293547550|ref|ZP_06672225.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297589817|ref|ZP_06948457.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|253725234|gb|EES93963.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257270960|gb|EEV03133.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274255|gb|EEV05772.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277763|gb|EEV08433.1| translation factor [Staphylococcus aureus subsp. aureus 68-397]
 gi|257280870|gb|EEV11015.1| translation factor [Staphylococcus aureus subsp. aureus E1410]
 gi|257283537|gb|EEV13664.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M876]
 gi|282312906|gb|EFB43307.1| translation factor [Staphylococcus aureus subsp. aureus C101]
 gi|282316154|gb|EFB46535.1| translation factor [Staphylococcus aureus subsp. aureus C427]
 gi|282321168|gb|EFB51499.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324446|gb|EFB54759.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326699|gb|EFB56997.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330410|gb|EFB59928.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282594818|gb|EFB99795.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|283789614|gb|EFC28437.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919670|gb|EFD96743.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094737|gb|EFE25009.1| translation factor [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466233|gb|EFF08760.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M809]
 gi|297576945|gb|EFH95659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437466|gb|ADQ76537.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 357

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 38  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 97  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252


>gi|134107902|ref|XP_777333.1| hypothetical protein CNBB1350 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260023|gb|EAL22686.1| hypothetical protein CNBB1350 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 488

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 113/206 (54%), Gaps = 16/206 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + L +   +A+PTETVYGLA  S +P A + +Y+IK RP+ NPLI HVS + M++
Sbjct: 64  LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLDMLR 123

Query: 72  K----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +      S   L L L   FWPGPL+L+    S        +   +T   R+P       
Sbjct: 124 RLLPPDYSFSSLYLALINAFWPGPLSLLFPSPSPP-----PSPAPQTNAIRMPSHPLALA 178

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQC 185
           LI     PL+ PSAN SG+ S T  +H+ +  +    +  IIDGG   +G+EST+VN   
Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVWNDLNGSDGLGCIIDGGDCGVGVESTVVNGLE 238

Query: 186 EK-----KVRILRPGGLEIETLKRAI 206
            K     KV ILRPGGL +E +K+ +
Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIV 264


>gi|253733050|ref|ZP_04867215.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728958|gb|EES97687.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 357

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 38  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 97  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252


>gi|21283769|ref|NP_646857.1| hypothetical protein MW2040 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486909|ref|YP_044130.1| hypothetical protein SAS2019 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|21205211|dbj|BAB95905.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245352|emb|CAG43827.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 348

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|58263054|ref|XP_568937.1| cell growth and/or maintenance-related protein [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|57223587|gb|AAW41630.1| cell growth and/or maintenance-related protein, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 488

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 113/206 (54%), Gaps = 16/206 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + L +   +A+PTETVYGLA  S +P A + +Y+IK RP+ NPLI HVS + M++
Sbjct: 64  LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLDMLR 123

Query: 72  K----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +      S   L L L   FWPGPL+L+    S        +   +T   R+P       
Sbjct: 124 RLLPPDYSFSSLYLALINAFWPGPLSLLFPSPSPP-----PSPAPQTNAIRMPSHPLALA 178

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQC 185
           LI     PL+ PSAN SG+ S T  +H+ +  +    +  IIDGG   +G+EST+VN   
Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVWNDLNGSDGLGCIIDGGDCGVGVESTVVNGLE 238

Query: 186 EK-----KVRILRPGGLEIETLKRAI 206
            K     KV ILRPGGL +E +K+ +
Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIV 264


>gi|289550269|ref|YP_003471173.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179801|gb|ADC87046.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus lugdunensis
           HKU09-01]
          Length = 344

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 27/333 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +     + G  IA+PTETVYGL  ++++  A+ ++YE K RP+ NPLI H+ D 
Sbjct: 17  DYPYLDEIKHVYEQGGLIALPTETVYGLGANAKDQEAVTKIYEAKGRPSDNPLIVHIYDQ 76

Query: 68  SMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
             +        D + + L   FWPGP++ +L L        + T  L +   R+P     
Sbjct: 77  QQLTPFIETITDKVQI-LMNYFWPGPISFILPLKRGYLCEKV-TGGLDSIAVRMPSHPIG 134

Query: 126 KLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + I  Y   P+A PSAN SG+ S T   H+    +  +I  II+G  S+ GLEST+++  
Sbjct: 135 RAILKYVDLPIAAPSANTSGKPSPTTFDHVY-HDLNGKIDGIINGDQSEEGLESTVLDCT 193

Query: 185 CEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQ---VRLR 239
                +I RPG +  +++  AI     ++   ++   P +PGM   HYAP +    V+++
Sbjct: 194 T-YPFKIARPGAI-TQSMINAILPDAVVDSNYNDMVRPIAPGMKYKHYAPDTPVTIVKMK 251

Query: 240 AIHV----NPREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGA 294
             H+    +   A   F  V  + I +  + + L K  + +K A  NL+  +   D+   
Sbjct: 252 GKHIPEIMDKEHAAFIFPEVYRQQIPSESLFIPLCKDDQDIKTANHNLYKILHDLDNMDH 311

Query: 295 SSIAFSSIPNHGLGI-----AINNRLERAAAPR 322
              A+     +G  I     AI NR+ +AAA R
Sbjct: 312 VHKAYI----YGFDINDGTQAIMNRMLKAAANR 340


>gi|15925106|ref|NP_372640.1| hypothetical protein SAV2116 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927690|ref|NP_375223.1| hypothetical protein SA1918 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156980431|ref|YP_001442690.1| hypothetical protein SAHV_2100 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315785|ref|ZP_04838998.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006904|ref|ZP_05145505.2| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258407042|ref|ZP_05680192.1| translation factor SUA5 [Staphylococcus aureus A9763]
 gi|269203752|ref|YP_003283021.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|296275405|ref|ZP_06857912.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|13701910|dbj|BAB43202.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247889|dbj|BAB58278.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722566|dbj|BAF78983.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257841375|gb|EEV65819.1| translation factor SUA5 [Staphylococcus aureus A9763]
 gi|262076042|gb|ACY12015.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|285817780|gb|ADC38267.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus 04-02981]
 gi|312830468|emb|CBX35310.1| SUA5 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128787|gb|EFT84787.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329726329|gb|EGG62797.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 348

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+ S + +     ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNARIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|315660271|ref|ZP_07913126.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus lugdunensis
           M23590]
 gi|315494698|gb|EFU83038.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus lugdunensis
           M23590]
          Length = 344

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 27/333 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +     + G  IA+PTETVYGL  ++++  A+ ++YE K RP+ NPLI H+ D 
Sbjct: 17  DYPYLDEIKHVYEQGGLIALPTETVYGLGANAKDQEAVTKIYEAKGRPSDNPLIVHIYDQ 76

Query: 68  SMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
             +        D + + L   FWPGP++ +L L        + T  L +   R+P     
Sbjct: 77  QQLTPFIETITDKVQI-LMNYFWPGPISFILPLKRGYLCEKV-TGGLDSIAVRMPSHPIG 134

Query: 126 KLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + I  Y   P+A PSAN SG+ S T   H+    +  +I  II+G  S+ GLEST+++  
Sbjct: 135 RAILKYVDLPIAAPSANTSGKPSPTTFDHVY-HDLNGKIDGIINGDQSEEGLESTVLDCT 193

Query: 185 CEKKVRILRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQ---VRLR 239
                +I RPG +  +++  AI     ++   ++   P +PGM   HYAP +    V+++
Sbjct: 194 T-YPFKIARPGAI-TQSMINAILPDAVVDSNYNDMVRPIAPGMKYKHYAPDTPVTIVKMK 251

Query: 240 AIHV----NPREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGA 294
             H+    +   A   F  V  + I +  + + L K  + +K A  NL+  +   D+   
Sbjct: 252 GKHIPEIMDKEHAAFIFPEVYRQQIPSESLFIPLCKDDQDIKTANHNLYKILHDLDNMDH 311

Query: 295 SSIAFSSIPNHGLGI-----AINNRLERAAAPR 322
              A+     +G  I     AI NR+ +AAA R
Sbjct: 312 VHKAYI----YGFDINDDTQAIMNRMLKAAANR 340


>gi|295428703|ref|ZP_06821329.1| translation factor [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295127373|gb|EFG57013.1| translation factor [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 365

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 46  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 104

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 105 PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 163

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 164 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 221

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 222 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 260


>gi|323439335|gb|EGA97059.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O11]
 gi|323442456|gb|EGB00085.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O46]
          Length = 357

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+ S + +     ++D
Sbjct: 38  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLKDFTYTLD 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 97  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAKQSEEGLESTVLDC-TSFPYKIARPGS 213

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252


>gi|302333762|gb|ADL23955.1| yrdC/SUA5 multi-domain translation factor protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 348

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|148268567|ref|YP_001247510.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394631|ref|YP_001317306.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257793874|ref|ZP_05642853.1| translation factor SUA5 [Staphylococcus aureus A9781]
 gi|258422064|ref|ZP_05684981.1| translation factor SUA5 [Staphylococcus aureus A9719]
 gi|258433567|ref|ZP_05688640.1| translation factor [Staphylococcus aureus A9299]
 gi|258440462|ref|ZP_05690632.1| translation factor [Staphylococcus aureus A8115]
 gi|258445670|ref|ZP_05693848.1| translation factor SUA5 [Staphylococcus aureus A6300]
 gi|258450124|ref|ZP_05698219.1| translation factor SUA5 [Staphylococcus aureus A6224]
 gi|258453421|ref|ZP_05701403.1| translation factor SUA5 [Staphylococcus aureus A5937]
 gi|282894760|ref|ZP_06302986.1| translation factor [Staphylococcus aureus A8117]
 gi|282929040|ref|ZP_06336625.1| translation factor [Staphylococcus aureus A10102]
 gi|295407046|ref|ZP_06816848.1| translation factor [Staphylococcus aureus A8819]
 gi|297246045|ref|ZP_06929902.1| translation factor [Staphylococcus aureus A8796]
 gi|147741636|gb|ABQ49934.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus JH9]
 gi|149947083|gb|ABR53019.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257787846|gb|EEV26186.1| translation factor SUA5 [Staphylococcus aureus A9781]
 gi|257841964|gb|EEV66396.1| translation factor SUA5 [Staphylococcus aureus A9719]
 gi|257849298|gb|EEV73277.1| translation factor [Staphylococcus aureus A9299]
 gi|257852531|gb|EEV76449.1| translation factor [Staphylococcus aureus A8115]
 gi|257855509|gb|EEV78446.1| translation factor SUA5 [Staphylococcus aureus A6300]
 gi|257856598|gb|EEV79504.1| translation factor SUA5 [Staphylococcus aureus A6224]
 gi|257864402|gb|EEV87148.1| translation factor SUA5 [Staphylococcus aureus A5937]
 gi|282589346|gb|EFB94438.1| translation factor [Staphylococcus aureus A10102]
 gi|282762848|gb|EFC02982.1| translation factor [Staphylococcus aureus A8117]
 gi|294968071|gb|EFG44098.1| translation factor [Staphylococcus aureus A8819]
 gi|297177044|gb|EFH36299.1| translation factor [Staphylococcus aureus A8796]
          Length = 357

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+ S + +     ++D
Sbjct: 38  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLKDFTYTLD 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 97  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNARIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252


>gi|319893067|ref|YP_004149942.1| YrdC/Sua5 family protein [Staphylococcus pseudintermedius HKU10-03]
 gi|317162763|gb|ADV06306.1| YrdC/Sua5 family protein [Staphylococcus pseudintermedius HKU10-03]
 gi|323463878|gb|ADX76031.1| translation factor, putative [Staphylococcus pseudintermedius ED99]
          Length = 350

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 9/223 (4%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDP 78
           D GL + +PTETVYGL  ++++ TAIR++YE K RP+ NPLI H+ D   +    A +  
Sbjct: 31  DGGL-VVLPTETVYGLGGNAKDDTAIRKIYEAKGRPSDNPLIVHIHDTDQLDDFVADISE 89

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +  L + FWPGP+T +L L     +    T  L +   R+P       L++    P+A 
Sbjct: 90  STRKLMEAFWPGPITFILPLKQGF-LCDRVTGGLNSVAVRMPSHPVALALLKAVDLPIAA 148

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSAN SG+ S T  +H     +   +  I+    S  GLEST+V+       RI RPG +
Sbjct: 149 PSANLSGRPSPTTFEHAF-HDLNHRVEGIMRSTQSDAGLESTVVDC-TSFPFRIARPGTI 206

Query: 198 EIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
               L   +  SVE+   +  T  P +PGM   HYAP + +++
Sbjct: 207 TRNMLNDILPQSVEVHSPL-ATEKPIAPGMKYRHYAPSTPLKM 248


>gi|87162029|ref|YP_494716.1| hypothetical protein SAUSA300_2070 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|151222232|ref|YP_001333054.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|221141635|ref|ZP_03566128.1| hypothetical protein SauraJ_08375 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|262049283|ref|ZP_06022158.1| hypothetical protein SAD30_0494 [Staphylococcus aureus D30]
 gi|262052618|ref|ZP_06024812.1| hypothetical protein SA930_2015 [Staphylococcus aureus 930918-3]
 gi|87128003|gb|ABD22517.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|150375032|dbj|BAF68292.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|259159488|gb|EEW44538.1| hypothetical protein SA930_2015 [Staphylococcus aureus 930918-3]
 gi|259162648|gb|EEW47215.1| hypothetical protein SAD30_0494 [Staphylococcus aureus D30]
 gi|269941715|emb|CBI50122.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|315196950|gb|EFU27292.1| hypothetical protein CGSSa01_03341 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329314801|gb|AEB89214.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724053|gb|EGG60577.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 348

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|33592619|ref|NP_880263.1| hypothetical protein BP1528 [Bordetella pertussis Tohama I]
 gi|33572265|emb|CAE41817.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382036|gb|AEE66883.1| hypothetical protein BPTD_1510 [Bordetella pertussis CS]
          Length = 350

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 153/322 (47%), Gaps = 27/322 (8%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG   A PTETVYGL  D+ NP A+ R+Y  K RP+ +P+I H++    V   AS  P +
Sbjct: 22  AGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPAA 81

Query: 81  L-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GHP-- 134
              L + FWPGPLTL+L       I    +    +   R P     + L+  +  G P  
Sbjct: 82  ARQLIQAFWPGPLTLILK--RAPHIGAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNG 139

Query: 135 ---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNV-QCEK 187
              +A PSAN  G +S T  +H+       +   +P ++DGG +++G+ESTI+++ + ++
Sbjct: 140 QGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMP-VLDGGDAEVGIESTIIDLSRLDQ 198

Query: 188 KVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            V   +LRPG   I   + A  + +     + + P++ G LK+HYAPR+ + L      P
Sbjct: 199 GVGPVLLRPG--HISAAQVAAVLGMPVARPDAAAPRASGTLKAHYAPRTPLELLDAAQLP 256

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEA-------AFNLFNYMKIADDSGASSIA 298
           R        V    +  A     LS     + A       A  L+  ++  D  G + I 
Sbjct: 257 RALAAAPAGVRQAVVALAPAPAGLSADVHWRMAPAGPARYAQALYALLRELDRQGYARIL 316

Query: 299 FSSIPNHGLGIAINNRLERAAA 320
               P  G   A+N+R+ RAAA
Sbjct: 317 VEQPPRSGDWDAVNDRIGRAAA 338


>gi|258453174|ref|ZP_05701165.1| translation factor SUA5 [Staphylococcus aureus A5948]
 gi|282923104|ref|ZP_06330789.1| translation factor [Staphylococcus aureus A9765]
 gi|294850086|ref|ZP_06790823.1| translation factor [Staphylococcus aureus A9754]
 gi|304379297|ref|ZP_07362036.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|257859120|gb|EEV81977.1| translation factor SUA5 [Staphylococcus aureus A5948]
 gi|282593295|gb|EFB98292.1| translation factor [Staphylococcus aureus A9765]
 gi|294823034|gb|EFG39466.1| translation factor [Staphylococcus aureus A9754]
 gi|302751997|gb|ADL66174.1| yrdC/SUA5 multi-domain translation factor protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304342156|gb|EFM08056.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|320140712|gb|EFW32564.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143688|gb|EFW35465.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 357

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 38  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 97  PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 214 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 252


>gi|57652138|ref|YP_186923.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|57286324|gb|AAW38418.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus COL]
          Length = 351

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 32  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 90

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 91  PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 149

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 150 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 207

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 208 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 246


>gi|88196020|ref|YP_500833.1| hypothetical protein SAOUHSC_02357 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87203578|gb|ABD31388.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
          Length = 365

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 46  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 104

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 105 PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 163

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 164 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 221

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 222 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 260


>gi|284025150|ref|ZP_06379548.1| hypothetical protein Saura13_11208 [Staphylococcus aureus subsp.
           aureus 132]
          Length = 348

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    + D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTFD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PRVEKLMQAFWPGPISFILPLKLGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|326319262|ref|YP_004236934.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323376098|gb|ADX48367.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 336

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 167/339 (49%), Gaps = 40/339 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +++  A   L AG  + +PTETVYGLA D+ +  A+ +++E K RP+ +PLI HV+    
Sbjct: 9   SSIDAAARALRAGQLLGLPTETVYGLAADAASDAAVAQIFEAKGRPSDHPLIVHVAGSEG 68

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLST---------------TDIHPLSTANLK 113
           +    AS+   +  L + FWPGPLTL+L  L                    HP++ A LK
Sbjct: 69  IPHFAASIPAFAEALVRAFWPGPLTLILPRLPDRAAAAAGGQDSVGLRCPAHPVAQAVLK 128

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
                 P    + +     H +A PSANR G++S T  +H+       +  L++DGG   
Sbjct: 129 ACASDDPALGGQPV-----HGVAAPSANRFGRVSPTTAQHVQGE--FGDGLLVLDGGPCT 181

Query: 174 IGLESTIVNVQCEKKVRI-LRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYA 231
           +G+ESTI++  C + V + LRPG +    +  A   V L      + TP++ G L++HYA
Sbjct: 182 VGIESTIID--CTRGVPVLLRPGAITRAEIAAACGLVPLSKEELPSHTPRASGTLEAHYA 239

Query: 232 PRSQVR------LRA----IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
           P ++VR      LRA    +  + R  L  +   P+++  + ++   + +      AA  
Sbjct: 240 PSAKVRLMDAKALRAGLELLGADARH-LAVYARAPLRSPSSGVVLRRMPEA--AAAAAQE 296

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           LF  ++  DD+G   I   + P       + +RL+RAAA
Sbjct: 297 LFAALRDFDDAGVKLIWVETPPETPDWEGVRDRLQRAAA 335


>gi|298695390|gb|ADI98612.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 348

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+ S + +     ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|258422884|ref|ZP_05685784.1| translation factor SUA5 [Staphylococcus aureus A9635]
 gi|257846908|gb|EEV70922.1| translation factor SUA5 [Staphylococcus aureus A9635]
          Length = 357

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 38  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLKDFTYTLD 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
           P    L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 97  PRVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 156 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 213

Query: 197 LE----IETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +      + L  +I V  +Y  ++T  P +PGM   HY+P + + + A
Sbjct: 214 ITAAMITDILPNSI-VHADY--NDTEQPIAPGMKYKHYSPNTPLTIIA 258


>gi|209881512|ref|XP_002142194.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209557800|gb|EEA07845.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 393

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 128/262 (48%), Gaps = 33/262 (12%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  I D   + +  ++L  G  +AIPTETVYGL  ++ N  +I  +Y+IK RP  NPL
Sbjct: 1   MKISDIGDDICVEEYVKYLLDGDLVAIPTETVYGLGGNAFNQKSILDIYKIKGRPKNNPL 60

Query: 61  ICHV-----SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           ICHV     +++ + +    V+ +   LA  FWPGPL+L+      ++I      + K A
Sbjct: 61  ICHVYSFEQAELQVFELTHKVNVVYKQLAFKFWPGPLSLIGK--KKSEIIEDVALSGKVA 118

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-------SICKEIPLII 167
             R P  G T K I+    P+A PSANRSG IS TN +HI+          I   I ++ 
Sbjct: 119 V-RCPNNGLTLKFIKMANVPIAAPSANRSGHISPTNPQHIIKEFTEQYMREIGVNIWILY 177

Query: 168 DGGISKIGLESTIVN-VQCEKKVRILRPGGLE--------------IETLKRAISVELEY 212
           D     IG+EST++  V+   ++ I RPG +               I++      + + Y
Sbjct: 178 DRDCCNIGVESTVIEYVEDTNEIIIYRPGAISKCDILNCLTKDNQFIKSQSWIKDINIRY 237

Query: 213 CVDETSTPQ--SPGMLKSHYAP 232
              E       SPGM   HY+P
Sbjct: 238 FSRENRDLDLPSPGMDIKHYSP 259


>gi|237748715|ref|ZP_04579195.1| translation factor SUA5 [Oxalobacter formigenes OXCC13]
 gi|229380077|gb|EEO30168.1| translation factor SUA5 [Oxalobacter formigenes OXCC13]
          Length = 342

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 31/333 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ +R A   L++G  +A PTETVYGL  D+ N  A   ++ +K RPA +PLI HV+  +
Sbjct: 6   SDDVRAAARMLESGQLVAFPTETVYGLGADAENAVATAAIFALKNRPANHPLIVHVAPDA 65

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +   +S  P  +  L   FWPGPLTL+L       I         +   R P     + 
Sbjct: 66  DIGYWSSYIPDEAKKLIDAFWPGPLTLILK--KAAHIPAAVAGGQDSIGLRCPSHPVAQA 123

Query: 127 LIETYGHP---LAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVN 182
           L+  +      +A PSANR G +S T  +H+         +  I++GG S++G+ESTI++
Sbjct: 124 LLRAFKGGKGGIAGPSANRFGHVSPTRAEHVREEFGDDPRLAAILEGGQSEVGIESTILD 183

Query: 183 ---VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
              ++    V +LRPG  +I +L+ A  +     + + + P++ G L SHYAP + V   
Sbjct: 184 LSRIETAGPV-LLRPG--KIHSLQIAEVIGRMPEMPDAAAPRASGTLASHYAPLTPV--- 237

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISL-NLSKTGK---LKEAAF---------NLFNYM 286
            + V  ++       +  KNI  A++   +LS   K   +K+             L+  +
Sbjct: 238 -VIVPEKDLTSVLKQLEKKNIRVALLHYSSLSSDRKQPLVKQTGLFCSPDVYSHQLYASL 296

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +  D   A  I   + P+      +N+RL RAA
Sbjct: 297 RELDRHRADVILVEATPDTEAWKGVNDRLRRAA 329


>gi|94309452|ref|YP_582662.1| translation factor SUA5 [Cupriavidus metallidurans CH34]
 gi|93353304|gb|ABF07393.1| putative translation factor (SUA5) [Cupriavidus metallidurans CH34]
          Length = 330

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 144/329 (43%), Gaps = 34/329 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP A+ R++  K RP+ +P+I HV D + V 
Sbjct: 11  LDEAVRLLEAGELVAFPTETVYGLGADAENPEAVARIFAAKGRPSNHPVIVHVVDGADVG 70

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTAN------LKTACFRVPCGFT 124
             +   P +   L   FWPGPLT++L   +     P + A       L+     V     
Sbjct: 71  YWSDDVPEAAQKLIDAFWPGPLTIILKRAAHI---PAAVAGGQDSIGLRCPSHPVAQALL 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIV 181
            +     G  +A PSAN+ GQ+S T  +H+      S+      +++G    +G+ES+IV
Sbjct: 128 SRFRRGRGG-IAAPSANKFGQVSPTTAEHVRDEFGGSV-----YVLEGDGVDVGIESSIV 181

Query: 182 NVQCEKKVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           ++         +LRPG +    +   +         + + P++ G LK+HYAPR+ + L 
Sbjct: 182 DLSRLDTAGPVLLRPGAITAAMMADVLGTMP--LPPDAAAPRASGTLKAHYAPRTTLTLA 239

Query: 240 AIHVNPR--------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                P+          L   G  P  +         +         A  L+  ++  D 
Sbjct: 240 QADALPQYLHGLSADGRLAWVGRAPATSDPRCTF---VEAPATPDAYAQELYRLLRRLDK 296

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   + F  +P       + +RL RAAA
Sbjct: 297 EGFQRLVFEPLPESLEWDGVRDRLGRAAA 325


>gi|291001607|ref|XP_002683370.1| predicted protein [Naegleria gruberi]
 gi|284096999|gb|EFC50626.1| predicted protein [Naegleria gruberi]
          Length = 380

 Score =  108 bits (271), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 133/274 (48%), Gaps = 59/274 (21%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L  G  ++ PTETVYGL  ++ +  A+  +++ KKRP  +P+I HV D+   KK
Sbjct: 1   EECSEHLRNGGLVSFPTETVYGLGANALDEKAVYSIFKAKKRPLTDPVIVHVLDVDQAKK 60

Query: 73  HASVDPLSL------HLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FT 124
           + +++  SL      HLA  FWPGPLTLV    S   + P   TA+      RVP     
Sbjct: 61  YITIEENSLHMRLYEHLAATFWPGPLTLVSK--SNEQVIPDCVTASTGFVGIRVPAHPII 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILS-------SSICKEIPLII------DGGI 171
           +KL+E    P++ PSANR G IS T   H++          I  E    I      +   
Sbjct: 119 RKLLEHCKLPISAPSANRFGHISPTRASHVMEDLGLYGKDEIDNENVFRILVLEEENNSE 178

Query: 172 SK----IGLESTIVNV-QCEK---KVRILRPGGLEIETLKRAISVELEYCVDETST---- 219
           SK    +G+EST+  + + E    K+ +LR GG+ +E LK+++    E+ ++E++T    
Sbjct: 179 SKTECSVGIESTVAKISELEDKSLKIEVLRRGGISLEQLKKSVQ---EFILEESNTRGTI 235

Query: 220 PQ---------------------SPGMLKSHYAP 232
           P+                     +PG L +HYAP
Sbjct: 236 PEVKVEARHQTYSVKMNDNTAQIAPGQLITHYAP 269


>gi|33600403|ref|NP_887963.1| hypothetical protein BB1417 [Bordetella bronchiseptica RB50]
 gi|33568002|emb|CAE31915.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 345

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 20/233 (8%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG   A PTETVYGL  D+ NP A+ R+Y  K RP+ +P+I H++    V   AS  P +
Sbjct: 17  AGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPAA 76

Query: 81  L-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GHP-- 134
              L + FWPGPLTL+L       I    +    +   R P     + L+  +  G P  
Sbjct: 77  ARQLIQAFWPGPLTLILK--RAPHIGAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNG 134

Query: 135 ---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNV-QCEK 187
              +A PSAN  G +S T  +H+       +   +P ++DGG +++G+ESTI+++ + ++
Sbjct: 135 QGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMP-VLDGGDAEVGIESTIIDLSRLDQ 193

Query: 188 KVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
            V   +LRPG   I   + A  + +     + + P++ G LK+HYAPR+ + L
Sbjct: 194 GVGPVLLRPG--HISAAQVAAVLGMPVARPDAAAPRASGTLKAHYAPRTPLEL 244


>gi|33595873|ref|NP_883516.1| hypothetical protein BPP1200 [Bordetella parapertussis 12822]
 gi|33565952|emb|CAE36502.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 350

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 20/233 (8%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG   A PTETVYGL  D+ NP A+ R+Y  K RP+ +P+I H++    V   AS  P +
Sbjct: 22  AGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPAA 81

Query: 81  L-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GHP-- 134
              L + FWPGPLTL+L       I    +    +   R P     + L+  +  G P  
Sbjct: 82  ARQLIQAFWPGPLTLILK--RAPHIGAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNG 139

Query: 135 ---LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNV-QCEK 187
              +A PSAN  G +S T  +H+       +   +P ++DGG +++G+ESTI+++ + ++
Sbjct: 140 QGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMP-VLDGGDAEVGIESTIIDLSRLDQ 198

Query: 188 KVR--ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
            V   +LRPG   I   + A  + +     + + P++ G LK+HYAPR+ + L
Sbjct: 199 GVGPVLLRPG--HISAAQVAAVLGMPVARPDAAAPRASGTLKAHYAPRTPLEL 249


>gi|283471333|emb|CAQ50544.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 348

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 7/219 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L+ GL I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K    ++D
Sbjct: 29  LNGGL-IGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKDQLKDFTYTLD 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
                L + FWPGP++ +L L        +S   L +   R+P     ++L++    PLA
Sbjct: 88  ARVEKLMQAFWPGPISFILPLKPGYLCRKVS-GGLSSVAVRMPSHSVGRQLLQIINEPLA 146

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       +I RPG 
Sbjct: 147 APSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDC-TSFPYKIARPGS 204

Query: 197 LEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRS 234
           +    +   +   + +   ++T  P +PGM   HY+P +
Sbjct: 205 ITAAMITDILPNSITHADYNDTEQPIAPGMKYKHYSPNT 243


>gi|120613197|ref|YP_972875.1| translation factor SUA5 [Acidovorax citrulli AAC00-1]
 gi|120591661|gb|ABM35101.1| translation factor SUA5 [Acidovorax citrulli AAC00-1]
          Length = 336

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 27/229 (11%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKL 86
           PTETVYGLA D+ +  A+ +++E K RP+ +PLI HV+    +    ASV P +  L + 
Sbjct: 27  PTETVYGLAADAASDAAVAQIFEAKGRPSDHPLIVHVAGPEGIPHFAASVPPFAEALVRA 86

Query: 87  FWPGPLTLVLDLLST---------------TDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           FWPGPLTL+L  L                    HP++ A LK      P    + +    
Sbjct: 87  FWPGPLTLILPRLPDRAAAAAGGQNSVGLRCPAHPVAQAVLKACASDDPALGGQPV---- 142

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
            H +A PSANR G++S T  +H+       E  +++DGG   +G+ESTI++  C + V +
Sbjct: 143 -HGVAAPSANRFGRVSPTTAQHVQDE--FGEGLVVLDGGPCAVGIESTIID--CTRGVPV 197

Query: 192 -LRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
            LRPG +    +  A  +  L      + TP++ G L++HYAP ++VRL
Sbjct: 198 LLRPGAITRAEIAAACGLSPLSKEELPSHTPRASGTLEAHYAPSAKVRL 246


>gi|160872705|ref|ZP_02062837.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli]
 gi|159121504|gb|EDP46842.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli]
          Length = 307

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 25/311 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDI 67
           +N L  A   L AG  I +PTETVY LA D+ N  AI +++ +K+RP   PL +    + 
Sbjct: 4   NNELASAVSCLKAGKLIVLPTETVYALAGDATNLNAILQIFSLKRRPLNQPLSVLLAKEH 63

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            M +    +  ++  LA+ FWPGPLTL+L    T  + P  T        RVP     + 
Sbjct: 64  PMTRWARDIPEVAEKLAERFWPGPLTLILKKEKT--VLPELTGGQHKIGLRVPDHPIAQA 121

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++ ++   +A PSANRS  +S T++KH+  +   + +  +IDGG  +IG+ESTI++V   
Sbjct: 122 VLSSFARGVAAPSANRSTALSPTHIKHV-RAEFDQPLEWMIDGGPCRIGIESTIIDVTFT 180

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI--HVN 244
              RILR G L +  +      E+E     +   + P + +    P+ QV    I  H+N
Sbjct: 181 IP-RILRLGALPLAKIASITPYEIEKSTSPSCFSKKPLITQ---VPK-QVLDEVIDTHLN 235

Query: 245 PREALIRFGNVPIKNIENAIISLNL----SKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             + L  F   P K     +  + +    S+ G+       L++Y+     +    I   
Sbjct: 236 HYQPLTVFAFSPAKKKHKNVTWIQMPSEASRYGQ------QLYHYLH-QSKAMHHRILVE 288

Query: 301 SIP--NHGLGI 309
           ++P  NH  GI
Sbjct: 289 AVPKRNHWAGI 299


>gi|323448739|gb|EGB04634.1| hypothetical protein AURANDRAFT_12057 [Aureococcus anophagefferens]
          Length = 357

 Score =  105 bits (263), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 31/243 (12%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-------ISMVK 71
           L +G   A PTETVYGL  ++ +  A+RR++E+K+RP  +PLI HV++       + +  
Sbjct: 8   LASGGLCAFPTETVYGLGANALDEAAVRRIFEVKRRPLSDPLIVHVAEPEDALGLVDLGG 67

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
             A+   + + L + FWPGPLTLV    +   +     A   T   R P  G  + LI  
Sbjct: 68  ARAAAHKVFVTLTRAFWPGPLTLVCP--ARNHLPACLGAGTGTVGVRCPSHGLARALIGA 125

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS---------KIGLESTIV 181
            G P+A PSAN  G +S T  +H++      E+  ++DG  +           G+EST+ 
Sbjct: 126 AGVPVAAPSANLFGHVSPTRAQHVVDDLGASEL-HVLDGSAAGEFGGDPPCAHGIESTVC 184

Query: 182 NVQCEKK------VRILRPGGLEIETLKRAIS----VELEYCVDETSTPQ-SPGMLKSHY 230
            +           + + R G +    L+RA++     EL   V +   P+ +PG L +HY
Sbjct: 185 AIAPAPGRDDAVVLTVYRRGAVAATALERAVADEPDAELRAAVAKLVVPECAPGQLLTHY 244

Query: 231 APR 233
           AP+
Sbjct: 245 APK 247


>gi|269925890|ref|YP_003322513.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789550|gb|ACZ41691.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 205

 Score =  105 bits (263), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 114/199 (57%), Gaps = 17/199 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA--VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           I D  A+R+A +F   G  IA PT+TVYG+   VD   P A+ ++Y  K+RP   P+   
Sbjct: 7   IEDKEAVRQAIDFALKGELIAFPTDTVYGVGSIVD---PQAVSKIYRAKERPLDKPIPIL 63

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           +SD S ++K+A  +D +++ LA+ FWPG LTLV  + +  D+     +   T  FR+P  
Sbjct: 64  LSDDSYLEKYAKDIDAIAMELARTFWPGALTLV--VRAREDVAEAVGSKDGTVGFRIPDY 121

Query: 122 GFTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
              +++I   G  +A+ SAN SG+   ++  +V+H L   +     +I+DGG  +IG  S
Sbjct: 122 EPAREIIRQCGGAMAVTSANISGERNPLTADDVEHDLGDRVA----IILDGGPCRIGKPS 177

Query: 179 TIVNVQCEKKVRILRPGGL 197
           T+V++  EK + I+R G L
Sbjct: 178 TVVDLSKEKPL-IVRKGAL 195


>gi|238028508|ref|YP_002912739.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1]
 gi|237877702|gb|ACR30035.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1]
          Length = 359

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 20/237 (8%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDISMV 70
           +A   L AG  +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H+    D    
Sbjct: 29  EAAARLAAGELVAFPTETVYGLGGDAESPQAVARIYAAKGRPANHPVIVHLPPGGDPGYW 88

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 D  +  L + FWPGPLTL+L       I    +    +   R P     + L+ 
Sbjct: 89  VPALPAD--ARRLIEAFWPGPLTLILK--RAAHIPDAVSGGQDSVGLRCPSHPVAQALLA 144

Query: 130 TY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +     GH  +A PSANR G +S T  +H+       +   ++DGG +++G+ESTI+++
Sbjct: 145 AFSARRAGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGAAEVGIESTILDL 202

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQVRL 238
                  +LRPG +  + +   +   L    D  +   P++ G LK+HYAPR+ + L
Sbjct: 203 -SRGFPALLRPGHVTPQQIAEVLGT-LPRLPDGGDPGAPRASGTLKAHYAPRTPLVL 257


>gi|219115932|ref|XP_002178761.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|219115936|ref|XP_002178763.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409528|gb|EEC49459.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409530|gb|EEC49461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 357

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 163/337 (48%), Gaps = 40/337 (11%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPL 79
           G  ++ PTETVYGL   + +  A R+++  K+RP  +PLI HV++ +  ++   A+ D L
Sbjct: 15  GDLVSFPTETVYGLGCHALDELACRKVFAAKERPLTDPLIVHVNEEAKAQELWQATADSL 74

Query: 80  SLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHP 134
                  L   FWPGPLTLV    +T+ +  +  A       R P   T + LI + G P
Sbjct: 75  EGRILACLIHEFWPGPLTLVAK--ATSSVPSVLMAGTGFVACRSPSHPTARALIASAGVP 132

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR---- 190
           +A PSAN+ G +S T   H+      +++ ++ +    ++G+ES++  ++ + K R    
Sbjct: 133 IAAPSANKFGHVSPTCADHVFDDLRYEDVWIVEEDEPLQVGVESSVAKLEMQDKARGVLT 192

Query: 191 ILRPGGLEIETLKRAI------SVELEYCVDETSTPQ----SPGMLKSHYAPR------S 234
           +LR G + +  L+R +      SV++      +++ +    +PG    HY+P       S
Sbjct: 193 VLRQGAISVLDLQRCLRKANIDSVQVRANTSRSTSDEEANVAPGQTVRHYSPNIPSFLVS 252

Query: 235 QVRLRAIHVNPREA------LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           +  + +   +  ++      ++ +G   +   E      +LS      +AA  +F+ ++ 
Sbjct: 253 KYCVESYMNDGNQSKLADTVIVDYGETMLSWKEYCAAYRDLSSVADSTKAAQAVFDTLRW 312

Query: 289 ADD-SGASSIAFSSI----PNHGLGIAINNRLERAAA 320
           A+   GAS + F  +     +  L +A+ ++L RAA+
Sbjct: 313 AEQVEGASRVLFPDLEVDDESDALILAVKDKLTRAAS 349


>gi|167844511|ref|ZP_02470019.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           B7210]
          Length = 227

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 100/195 (51%), Gaps = 13/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPG 195
           +++       +LRPG
Sbjct: 186 LDL-SRGFPALLRPG 199


>gi|167737355|ref|ZP_02410129.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 14]
          Length = 228

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 100/195 (51%), Gaps = 13/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P     L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILK--RATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPG 195
           +++       +LRPG
Sbjct: 186 LDL-SRGFPALLRPG 199


>gi|153004279|ref|YP_001378604.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027852|gb|ABS25620.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 205

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 95/182 (52%), Gaps = 5/182 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTET YGL   +R+P A+ RL   K RP   PL    +D   V++ A +D L+  LA
Sbjct: 24  VAYPTETFYGLGALARDPAALERLARAKLRPEGKPLPLLAADADQVREVARLDGLASRLA 83

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPGPLTLVL  L   D     TA  +T   RVP     + L    G  +   SAN S
Sbjct: 84  ERFWPGPLTLVLPALPGLDAA--VTAGSRTVAVRVPGSELARALARQAGGAIVSTSANLS 141

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G    ++    LS S+   I  ++DGG +  G  STIV V  E +VR++R G +  E ++
Sbjct: 142 GDPPPSSAAQ-LSPSLVARIDHVLDGGSTPGGRPSTIVEVVGE-RVRLVRDGVIPFEEVQ 199

Query: 204 RA 205
            A
Sbjct: 200 AA 201


>gi|66828913|ref|XP_647810.1| hypothetical protein DDB_G0278955 [Dictyostelium discoideum AX4]
 gi|60470098|gb|EAL68079.1| hypothetical protein DDB_G0278955 [Dictyostelium discoideum AX4]
          Length = 403

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 174/390 (44%), Gaps = 77/390 (19%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++ T  N +    +  + GL +A PTETVYGL  ++ +  A+  +++ K RP  +P+I
Sbjct: 9   KIVNPTLENLIEAGNKIKNGGL-VAFPTETVYGLGANALDKDAVLSIFKAKGRPLTDPVI 67

Query: 62  CHVSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            H+ +    + ++K       +   L+  FWPGPLT+V    S+  I  + TA       
Sbjct: 68  VHIIESEYALKLLKLTEKQKEIFQVLSDNFWPGPLTIVAK--SSELIPMIVTAETGYVGV 125

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS---- 172
           R P     ++LI+  G P+A PSANR G +S T   H+L      + P+ I   I+    
Sbjct: 126 RFPNHPLAQQLIKHSGKPIAAPSANRFGHVSPTTANHVLDD--LADSPITILNSINNNSS 183

Query: 173 --------------------KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212
                               KIG+EST++ +  + ++ ILR GG+  ++LK  I+ + + 
Sbjct: 184 CDNKDIDDNNNNTKEEEEACKIGIESTVLKIVSDSELVILRRGGVSEKSLKCVINNKFKD 243

Query: 213 CVD--------ETSTPQ---SPGMLKSHYAPRSQVRLRAIHVNPRE-------------- 247
            +         E +T Q   +PG L +HYAP  Q  +    +N                 
Sbjct: 244 TIQITSINKTVENTTSQGQEAPGQLLTHYAPDIQTFILDNILNSENDNNNNNNKNNDNSL 303

Query: 248 -----ALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIADDSGASSIA--- 298
                  I FGN      +N  ++  +LS+   + EAA  LF  ++ +++   + I    
Sbjct: 304 DLKECVYIDFGNQLPNEFKNQCLAYRDLSENKNILEAANQLFAVLRWSENQEGAKIILLP 363

Query: 299 ------FSSIPNHGLGIAINNRLERAAAPR 322
                 F S+ N     A+ +R+ RAA+ +
Sbjct: 364 DLRKEPFKSLDNSE---AVFDRIFRAASGK 390


>gi|114567901|ref|YP_755055.1| hypothetical protein Swol_2395 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338836|gb|ABI69684.1| translation factor SUA5 [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 318

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 7/199 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   + A   +A PTETVYGL   +    A+ +++  K R   NPL+ H+S +  V+  
Sbjct: 2   QAASLIKAQELVAFPTETVYGLGAAAFQSQAVEKIFLAKGRAETNPLLLHLSCMEQVESV 61

Query: 74  A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           A  + P ++ L + FWPGPL+++L    T  +  +      T   R+P       LI+  
Sbjct: 62  AKEIPPAAIMLMERFWPGPLSIILPARET--VPAIVRGGKTTVGLRMPAHPVALALIDQA 119

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PLA PSAN SG+ S    +H+  + +  +I  I+D G + +GLESTI+++      RI
Sbjct: 120 G-PLAAPSANLSGRPSPVTAEHV-KADLDGKIAAILDAGPTGLGLESTIIDL-SNPGYRI 176

Query: 192 LRPGGLEIETLKRAISVEL 210
           LR GG+ +E L++A+ + +
Sbjct: 177 LRQGGITVEELEKAMGMSI 195


>gi|167835602|ref|ZP_02462485.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           MSMB43]
          Length = 231

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 103/200 (51%), Gaps = 17/200 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  +  + +A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++
Sbjct: 7   IPTAEQIDEAAGLLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHLA 66

Query: 66  DISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
             S       VD L     KL   FWPGPLTL+L       I    +    +   R P  
Sbjct: 67  PGS--DPGYWVDSLPADAQKLIDAFWPGPLTLILK--RAAHIPDAVSGGQDSVGLRCPSH 122

Query: 123 -FTKKLIETY-----GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
              + L+  +     GH  +A PSANR G +S T  +H+       +   ++DGG S +G
Sbjct: 123 PVAQALLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDE--FGDAVHVLDGGPSDVG 180

Query: 176 LESTIVNVQCEKKVRILRPG 195
           +ESTI+++       +LRPG
Sbjct: 181 IESTILDL-SRGFPALLRPG 199


>gi|328463675|gb|EGF35267.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus MTCC
           5462]
          Length = 272

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 98/172 (56%), Gaps = 14/172 (8%)

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS---TANLKTACFRVPC-GFTKKL 127
           ++A++ P +  L   FWPGPLT++L++L       LS   T  L+TA FR P    T+KL
Sbjct: 2   QYATITPDAAKLMDTFWPGPLTIILNILPGR----LSMKVTGGLQTAAFRNPDDALTRKL 57

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I T G P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ESTI+++    
Sbjct: 58  IATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTP 116

Query: 188 KVRILRPGGL---EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
              ILRPG +   E+E L   +     + V +   P++PGM   HYAP +QV
Sbjct: 117 PA-ILRPGAIGPHELEPLLGPVD-SAAHHVGKNEAPKAPGMKYKHYAPAAQV 166


>gi|94969639|ref|YP_591687.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
 gi|94551689|gb|ABF41613.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
          Length = 215

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 6/187 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG+ + +PT+T YGLA D  N  A+ R+YEIK R    PL   +  +   ++ A   P
Sbjct: 25  LKAGMVLGMPTDTFYGLAADPFNLRAVERIYEIKSRSRHKPLSLMIESVDQAEELAQDLP 84

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
            S + LA+ FWPGPLT+++   +   +   +TAN      R+P       +++  G P+ 
Sbjct: 85  SSFYLLARRFWPGPLTMIIRAHARLPLK--ATANSGNIAVRIPSAPIPLAVLKAAGLPIT 142

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPG 195
             SAN SGQ   T  +  L   + + +PLIIDGG S   + STIV++   + + RI+R G
Sbjct: 143 ATSANLSGQAECTTARA-LKQQMEERLPLIIDGGNSPRDVHSTIVDLSSGDGQWRIIREG 201

Query: 196 GLEIETL 202
            +  E +
Sbjct: 202 AVSQEQI 208


>gi|284161228|ref|YP_003399851.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM
           5631]
 gi|284011225|gb|ADB57178.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM
           5631]
          Length = 289

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 6/201 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + LR+    +  G  +A PTETVYGL  ++ +  A++RL+E+K RP   P+   VSD+
Sbjct: 13  DESVLREVAHMIKEGKLVAYPTETVYGLGTNALDENAVKRLFEVKGRPK-KPVSVVVSDL 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
             V++ A  +  +L L + F+PGP+T+++       I P+ TA       R+P      K
Sbjct: 72  DHVERIAEPNETALKLMEKFFPGPITIIVKKKKV--IPPIVTAGTDKIGIRLPDYKIPLK 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L E  G P+   SAN SG+ S T  +HI+   + K I  I+D G + + +EST+++   E
Sbjct: 130 LAEFSGVPVTSTSANVSGKPSPTKPEHIMVDFMGK-IDAILDAGETPLKIESTVIDTTTE 188

Query: 187 KKVRILRPGGLEIETLKRAIS 207
              R+LR G L +  +++ + 
Sbjct: 189 PP-RVLRVGALPLNEIEKVVG 208


>gi|255578866|ref|XP_002530287.1| Protein SUA5, putative [Ricinus communis]
 gi|223530185|gb|EEF32094.1| Protein SUA5, putative [Ricinus communis]
          Length = 233

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 4/193 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A E L AG  IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   + D+S +K 
Sbjct: 29  EEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICIGDVSDIKH 88

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A  D L   L     PG +T+VL+   ++ +       L T   RVP C F +++    
Sbjct: 89  FAVTDHLPNGLLDSLLPGAVTVVLNRGESSALEKSLNPGLDTIGVRVPDCNFIREIAHGL 148

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           G  +A+ SAN SG+ S   +K     ++ +    + DGG+   G E ST+V++    K +
Sbjct: 149 GRAVALTSANLSGKPSSVCIKDF--ENLWEHCAYVYDGGVLPSGREGSTVVDLSRLGKYK 206

Query: 191 ILRPGGLEIETLK 203
           ILRPG  + ET++
Sbjct: 207 ILRPGSAKEETVE 219


>gi|296537237|ref|ZP_06899140.1| Sua5/YciO/YrdC family protein [Roseomonas cervicalis ATCC 49957]
 gi|296262436|gb|EFH09158.1| Sua5/YciO/YrdC family protein [Roseomonas cervicalis ATCC 49957]
          Length = 185

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 8/173 (4%)

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + L+   G P+  PSANRSG +S T   H+L   +   I  ++DGG   +G+EST+++
Sbjct: 6   LAQALLRAAGVPVVAPSANRSGAVSPTTAAHVLEG-LSGRIAAVLDGGPCAVGVESTVLD 64

Query: 183 VQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +     + +LRPGG+  + L+  +      +  + E +   +PGML SHYAP   VRL A
Sbjct: 65  LTGATPL-LLRPGGVPEDALRALLGPIGRPDPALAEDAARPAPGMLASHYAPALPVRLEA 123

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
             V+P+EAL+ FG      +  A     LS++G   EAA  LF  ++  D  G
Sbjct: 124 ESVSPQEALLAFG----PALPGAGAVWQLSESGDTMEAAARLFAGLRWLDAEG 172


>gi|118389926|ref|XP_001028008.1| Sua5/YciO/YrdC/YwlC family protein [Tetrahymena thermophila]
 gi|89309778|gb|EAS07766.1| Sua5/YciO/YrdC/YwlC family protein [Tetrahymena thermophila SB210]
          Length = 434

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 161/354 (45%), Gaps = 52/354 (14%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+   +   +++A E L  G  ++ PTETVYGL  ++ +  A++ ++  K RP  +P+I
Sbjct: 31  QILDDKNEEDMKQAGELLRNGKLVSFPTETVYGLGANALDEEAVKSIFLAKNRPLTDPVI 90

Query: 62  CHVSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTAC 116
            H+      ++ V+    +  +   LA  FWPGPLT++L   +  +I P + TA      
Sbjct: 91  VHIDKKEDGLNFVEITPGIKEVYDFLADNFWPGPLTMILK--ANFNIIPRVVTAQTDFVG 148

Query: 117 FRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--- 172
            R P     ++LI     P+A PSAN    +S T+  H+ +    + I +I D       
Sbjct: 149 IRCPQHEVARRLIRIAQRPIAAPSANLFAHVSPTSAVHVFNDFYDQNISIINDPVQELPS 208

Query: 173 -KIGLESTIV--------NVQCEKKVR--ILRPGGLEIETLKRAISVELEY--------- 212
            + G+EST+V        N Q   K    ILR G L  E + +AIS   ++         
Sbjct: 209 CEFGIESTVVKIEEIASSNQQENSKFNLVILRFGSLSGEQIAQAISKSDQFKDRITIVKK 268

Query: 213 ----CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII--- 265
                V E    ++PG L  HY+P     L  +  +  +  +++  +   NI+ +II   
Sbjct: 269 KKENKVAEHIHSEAPGQLLKHYSPYINCYLFHLRSSDDKQDLKYPLLNDINIKESIIFDY 328

Query: 266 -------------SLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNH 305
                         ++LS+ G ++E    L++ ++ A++   A +I   +I +H
Sbjct: 329 KNQTEHLKDKCMKYISLSEKGDMREIMTKLYDSLRWAENVDAAKNILIYNIDHH 382


>gi|299117058|emb|CBN73829.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 453

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 165/399 (41%), Gaps = 91/399 (22%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS--- 68
           L +A   L +G  +A PTETVYGL  ++ +  A+ ++++ K+RP  +PLI HV D +   
Sbjct: 55  LTEAGARLRSGKLVAFPTETVYGLGANALSEDAVLKIFQAKQRPLTDPLIVHVPDTAGAL 114

Query: 69  -----MVKKHASVDPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
                 V+         L   L +  WPGPLTL+    +   + P  TA       R P 
Sbjct: 115 AVVDFEVEGGGGQKARRLLDLLGEKLWPGPLTLIAK--ADKKVPPCITAGTGFVGVRCPA 172

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLE 177
              T++L+   G P+A PSANR G +S T   H++      +I L++DG   G   +G+E
Sbjct: 173 HPVTRQLLSIAGVPVAAPSANRFGHVSPTQAMHVMEDLGGSDI-LVLDGDTSGACGVGIE 231

Query: 178 STIVNVQ-CEKKVRILRPGGLEIETLKRAI------------------------------ 206
           ST+  +     ++ ILR GG+  + ++ A+                              
Sbjct: 232 STVAKIDAANDRILILRMGGVTQDRIRDALKEGGEEFSGISVYAGSVAGGKTEAKGEEER 291

Query: 207 ------SVELEYCVDETSTP-----------QSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
                 S++ E   DE   P            + G L  HY+P  +V  R +   P    
Sbjct: 292 EREARGSLKDEPAKDEGQAPGLMRQLCAISDATTGQLLRHYSPDLEV-FRVLGATPGSTS 350

Query: 250 IRF-GNVPIKNI--------------------ENAIISLNLSKTGKLKEAAFNLFNYMKI 288
            R  G   + ++                     +A+   +LS  G   EAA  LF  ++ 
Sbjct: 351 GRMVGGGELADLASMARTSVVVDFAGQLKGLQASAVAYSDLSIEGSADEAAKGLFRALRW 410

Query: 289 ADDS-GASSIAFSSIP---NHGLGIAINNRLERAAAPRN 323
           A+    A  +  + +P   N  +  A+N+R+ R+A+ + 
Sbjct: 411 AETQPSAQRLLIAGLPSKSNGDMAAAVNDRIYRSASGKT 449


>gi|218512322|ref|ZP_03509162.1| probable translation factor protein [Rhizobium etli 8C-3]
          Length = 91

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 64/90 (71%)

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           + VRL A  V P EALI FG   ++   +A I L+LS  G L EAA NLF+YMK AD SG
Sbjct: 2   ASVRLNASAVEPGEALIAFGGAAVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASG 61

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            SSIAFS IP+ GLG AIN+RL+RAAAPR+
Sbjct: 62  VSSIAFSPIPDDGLGEAINDRLQRAAAPRD 91


>gi|91202678|emb|CAJ72317.1| similar to YrdC protein [Candidatus Kuenenia stuttgartiensis]
          Length = 210

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 100/194 (51%), Gaps = 21/194 (10%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI+ + + +    ++  A + L  G  +A PTETVYGL V   NP AI RLYE KKRPA 
Sbjct: 10  QILDVRNQDLYWTSIEIAAKALRNGGIVAFPTETVYGLGVHKDNPEAIERLYEAKKRPAE 69

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             L   ++DI  V+ +A +V  ++  L + FWPGPL ++  L   +DI           C
Sbjct: 70  KRLTLMIADIGEVELYAGAVSDVAKRLMESFWPGPLAIIFPLKDGSDI-----------C 118

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI T   P+A  SAN SG    T+   + ++    EI  I+DGG +   
Sbjct: 119 VRLPDNAIARDLIRTANIPVATTSANTSGHPPSTDASQV-TAYFKDEIDFILDGGPTPSH 177

Query: 176 LESTIVNVQ---CE 186
             ST+V ++   CE
Sbjct: 178 EPSTVVKIKDGVCE 191


>gi|167561724|ref|ZP_02354640.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           EO147]
          Length = 198

 Score = 99.0 bits (245), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 22/185 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   LDAG  +A PTETVYGL  D+++P A+ R+Y  K RPA +P+I H++  S   
Sbjct: 13  IDEAAALLDAGELVAFPTETVYGLGGDAQSPAAVARIYAAKGRPANHPVIVHLAPGS--D 70

Query: 72  KHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               VD L     KL   FWPGPLTL+L       I    +    +   R P     + L
Sbjct: 71  PGYWVDELPADAKKLIDAFWPGPLTLILK--RAAHIPDAVSGGQDSVGLRCPSHPVAQAL 128

Query: 128 IETY-----GH-PLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLES 178
           +  +     GH  +A PSANR G +S T  +H+      S+      ++DGG S +G+ES
Sbjct: 129 LRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEFGDSVH-----VLDGGASDVGIES 183

Query: 179 TIVNV 183
           TI+++
Sbjct: 184 TILDL 188


>gi|328870458|gb|EGG18832.1| hypothetical protein DFA_02571 [Dictyostelium fasciculatum]
          Length = 560

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 18/249 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I ++TD N +R A + +  G  +A PTETVYGL  ++ +  A+  ++E K RP  +P+I
Sbjct: 108 KIDTLTDDN-MRDAADKIRRGGLVAFPTETVYGLGANALDEKAVLSIFEAKGRPLTDPVI 166

Query: 62  CHV----SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HV        +++   +   L   L   FWPGPLT+V    ++  I P+ TA       
Sbjct: 167 VHVICKDEAAKLLELTDAQKRLFTTLTDAFWPGPLTIV--GRASALIPPIVTAQTGYVGV 224

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KI 174
           R P     ++LI+    P+A PSANR G +S T   H+        I ++  G  +    
Sbjct: 225 RYPKHPVAQRLIKESQCPIAAPSANRFGHVSPTLPIHVFDDLGHSPITILEPGQDAPCAF 284

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI--------SVELEYCVDETSTPQSPGML 226
           G+EST++ +  +  + ILR GG+  + +K+          +V  +     T   ++PG L
Sbjct: 285 GIESTVLKIVDDHTLCILRKGGVCEKDIKQLFQHQTISITAVNKQVSNKTTEGQEAPGQL 344

Query: 227 KSHYAPRSQ 235
            +HYAP  Q
Sbjct: 345 LTHYAPDIQ 353


>gi|330799541|ref|XP_003287802.1| hypothetical protein DICPUDRAFT_151977 [Dictyostelium purpureum]
 gi|325082178|gb|EGC35669.1| hypothetical protein DICPUDRAFT_151977 [Dictyostelium purpureum]
          Length = 382

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 164/367 (44%), Gaps = 54/367 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N +    +  D GL ++ PTETVYGL  ++ +  A+  +++ K RP  +P+I HV D   
Sbjct: 17  NIIEAGKKIKDGGL-VSFPTETVYGLGANALDEKAVLSIFQSKGRPLTDPVIVHVIDSEY 75

Query: 70  VKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
            K    +      + K+     WPGPLT+V    S+  I  + TA       R P     
Sbjct: 76  AKTLLQLTDKQKMIFKVLTDNLWPGPLTIVAK--SSELIPMIVTAQTGYVGVRYPKHDLA 133

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLEST 179
           + LI+  G P+A PSANR G +S T   H+       +I  I+D         KIG+EST
Sbjct: 134 QLLIKHSGKPIAAPSANRFGHVSPTRAMHVFDDLGHSDIT-ILDCNEKYQSPCKIGIEST 192

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL----------EYCVDETSTPQ-SPGMLKS 228
           ++ +  +  + ILR GG   ++++  I              +   ++TS  Q +PG L +
Sbjct: 193 VLKIVSDDHLVILRKGGHSEKSIREIIDKHFGNEIRIEAINKTVSNQTSEGQEAPGQLLT 252

Query: 229 HYAPRSQVRLRAIHVNPRE----------------ALIRFGN-VPIKNIENAIISLNLSK 271
           HYAP  Q  +    +                      I FGN +P++     +   +LS+
Sbjct: 253 HYAPDIQTFILENTLTNNIDNNSNNSSSNIDFSECVYIDFGNQLPMEFKNKCLAYKDLSE 312

Query: 272 TGKLKEAAFNLFNYMKIADDSGASSI---------AFSSIPNHGLGIAINNRLERAAAPR 322
           +  ++EA+  LF+ ++ +++   + I          F  + N     A+ +R+ RA++ +
Sbjct: 313 SCNIEEASGELFSVLRWSENVKNAKIILLPDLRKEQFKQLDNSE---AVFDRIFRASSGK 369

Query: 323 NQSQRIV 329
             S  ++
Sbjct: 370 YASLSLI 376


>gi|328952765|ref|YP_004370099.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453089|gb|AEB08918.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 214

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L  A   L  G  IA PTET Y LAVD+   +A+ RL ++KKRP    L+  ++D
Sbjct: 11  VDDRILDPALPTLQEGGVIACPTETYYALAVDAFQESALHRLLQLKKRPRSKGLLVLLAD 70

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           + M+   A+  P L+  L   FWPGPLTL+L   +  D+    T    T   RV      
Sbjct: 71  LQMLDLVAAEVPSLAQRLMAQFWPGPLTLILK--ARPDLPKALTGGDNTIGVRVSSHPLA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L + YG P+   SAN SGQ  + +   I    +  +I LI+       GL STI+N+ 
Sbjct: 129 QHLPQMYGRPVTGTSANLSGQAPMISASQI-EQELGAQIDLILKNSPCGGGLPSTILNIT 187

Query: 185 CEKKVRILRPGGLEIETLKRAISV 208
           C+  + ++R G + +E L+  I V
Sbjct: 188 CKPPL-LVRAGAVSLEHLEECIGV 210


>gi|224104509|ref|XP_002313460.1| predicted protein [Populus trichocarpa]
 gi|222849868|gb|EEE87415.1| predicted protein [Populus trichocarpa]
          Length = 232

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 8/194 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E L AG  IA+PT+T+YG A D+ +  A+ R+YE+K R   +PL   V D+S ++ 
Sbjct: 28  QEAIEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEMKGRKHTSPLAICVGDVSQIQH 87

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A  + L   L     PGP+T++L    ++ +       L +   RVP C F + +    
Sbjct: 88  FAVTEYLPHGLLDSLLPGPVTVILRRGESSALEKSLNPGLDSVGVRVPDCNFIRVVARGL 147

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIGLESTIVNVQCEKK 188
           G  +A+ SAN SGQ S   +K     ++      + DGG+   ++ G  STIV++    K
Sbjct: 148 GKAVALTSANLSGQPSSLCIKDF--ENLWNRCAYVYDGGVLPSNRAG--STIVDLTRPGK 203

Query: 189 VRILRPGGLEIETL 202
            +ILRPG  + ETL
Sbjct: 204 YKILRPGSAKEETL 217


>gi|258592148|emb|CBE68453.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 195

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L +G  +A PT+T+Y L  D+ NP A+ R++E K R  + P+   V+D++M  
Sbjct: 1   MAQAASVLRSGGLVAFPTDTLYALGADASNPLAVERVFEAKGRSLIKPIPLLVADLTMAI 60

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
           +     P  ++ LA+ +WPGPLTLV+    T  +  L TA       RVP       LI 
Sbjct: 61  QLVGELPEAAVRLAERWWPGPLTLVVTAPRT--VCALLTAETGRIGLRVPDSAVALALIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+   SANRSGQ    N   +L   +  ++ L++DGG    G  ST+++V  +  +
Sbjct: 119 QFGGPVTGTSANRSGQKDPMNAYEVL-HQLGDQVDLVLDGGPVVGGSPSTVIDVTTDPPI 177

Query: 190 RILRPG 195
            I+R G
Sbjct: 178 -IMREG 182


>gi|320353909|ref|YP_004195248.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
 gi|320122411|gb|ADW17957.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
          Length = 211

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 107/209 (51%), Gaps = 13/209 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +++T  N  R A   L  G+ +A PTET YGLAVD  N  A+ RL++IK+R    P++  
Sbjct: 5   LAVTPENLDRAAAVLLSGGV-VAFPTETYYGLAVDPFNQKALERLFQIKRRARELPILVL 63

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPC 121
           VS    V++     P   + L + FWPGPLTLV    S+  +    T N  T   R  P 
Sbjct: 64  VSSHEQVRRLVEEIPAIYNCLIEAFWPGPLTLVYPARSS--VPNRLTGNTGTVGIRHSPN 121

Query: 122 GFTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
               +LI+ +G P+   SANRSG    ++   V+ I  +    E+ LI+DGG +  G  S
Sbjct: 122 ETANRLIDVFGGPITATSANRSGSPAAVTADEVERIFDT----EVDLILDGGHTPGGSGS 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           T+V +     +  LR G L   T++  ++
Sbjct: 178 TLVGLHG-ATLTCLREGKLAFATVRSRVA 205


>gi|171057058|ref|YP_001789407.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6]
 gi|170774503|gb|ACB32642.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6]
          Length = 346

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 150/320 (46%), Gaps = 28/320 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVDPLSLHL 83
           +A PTETVYGL   + +  A+ +++  K RP+ +PLI HV    S +   A + P++  L
Sbjct: 30  VAFPTETVYGLGARADDADAVVKIFAAKGRPSDHPLIVHVADAASALAFAAELPPVARRL 89

Query: 84  AKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
              FWPGPL+LV+     ++       S+  L+     V     +         +A PSA
Sbjct: 90  MDAFWPGPLSLVVPRRADVAAAAAGGQSSVGLRCPAHPVAQALLRAAAAAGVPGVAAPSA 149

Query: 141 NRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           NR G++S T   H++   +   ++P ++DGG  ++G+ES IV+      V +LRPG L  
Sbjct: 150 NRFGRVSPTRAAHVIDEFADLADLP-VLDGGDCELGIESAIVDCTRGYPV-LLRPGCLGA 207

Query: 200 ETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
             ++ A    L    DE + P++ G L++HYAPR++VRL           +  G++P   
Sbjct: 208 AQIEAAAGEPLR-SRDEQA-PRASGTLEAHYAPRAKVRLMDRQQIQTALQVLHGSLPAGK 265

Query: 260 IEN--------AIISLN---LSKTGKLKE--------AAFNLFNYMKIADDSGASSIAFS 300
                      A+ S      S+ G L          AA  LF  ++  DD+    I   
Sbjct: 266 AARAAAPGLTLAVYSRGPRPASQPGVLWRTMPADAGAAAHELFGVLRELDDALVQLIWVE 325

Query: 301 SIPNHGLGIAINNRLERAAA 320
             P+      + +RL+RA+A
Sbjct: 326 QPPSEPAWDGVRDRLQRASA 345


>gi|321463246|gb|EFX74263.1| hypothetical protein DAPPUDRAFT_215182 [Daphnia pulex]
          Length = 226

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 20/219 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+ A E L +G  IA+PT+T+YG+A  S++P A+++LY+IK R    P+   VS +S + 
Sbjct: 17  LKNAVELLKSGSVIALPTDTLYGIACLSQSPEALKKLYQIKSRDKNKPVAICVSQVSEIA 76

Query: 72  K--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           K  H +VD   LH      PGP+TLV +   +  ++P      K    R+P   F ++L 
Sbjct: 77  KWGHVTVDERLLH---DLLPGPVTLVFE--RSPALNPELNPGTKLVGIRIPDSWFIRQLS 131

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LESTIVNVQ 184
            +   PLA+ SAN SG  S  +V+  L   I + +  + +GG    G    L ST+V++ 
Sbjct: 132 NSCAEPLALTSANISGSQSTLSVEEFL--GIWEHLGAVFNGGPIPDGSTARLGSTVVDLS 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQS 222
                RI+RPG  +  T+++     LE Y + E S P S
Sbjct: 190 SPGTYRIIRPGCAQTITVEK-----LEKYGLVEASEPAS 223


>gi|225435305|ref|XP_002285123.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297746251|emb|CBI16307.3| unnamed protein product [Vitis vinifera]
          Length = 272

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 5/198 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD++A  +A E + AG  IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D
Sbjct: 63  TDAHA-EEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 121

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +  +++ A  D L   L     PGP+T+VL     + I       L +   RVP C F +
Sbjct: 122 VLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRVPDCDFIR 181

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQ 184
            +       LA+ SAN SGQ S   +K     ++ +    + DGG+   G   ST+V++ 
Sbjct: 182 VIAHGSETALALTSANLSGQPSSVCIKDF--ENLWEHCAYVYDGGVLPSGRAGSTVVDLS 239

Query: 185 CEKKVRILRPGGLEIETL 202
              K +ILRPG    ET+
Sbjct: 240 RLGKYKILRPGSAMEETV 257


>gi|157118653|ref|XP_001659198.1| hypothetical protein AaeL_AAEL001412 [Aedes aegypti]
 gi|108883260|gb|EAT47485.1| conserved hypothetical protein [Aedes aegypti]
          Length = 251

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 12/200 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++  +D+ A+R+A   L++G  IA+PT+TVYGLA  + +P AI+RLY IK R    P+  
Sbjct: 38  VIKSSDNKAIRQAANLLESGKVIALPTDTVYGLACSANDPKAIQRLYAIKGREEKKPVAI 97

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V+D + ++     + L   L +   PGP+T+V+      D +P     ++    R+P  
Sbjct: 98  CVADFNDLRHWGQANHLPNELLEQLLPGPVTIVVRKSVHLD-NPFLNPGVEKIGIRIPDF 156

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177
            F + +   +  P+A+ SANRS + S  NV       +   +  + DGG  ++GL     
Sbjct: 157 DFIRDVSRAFRFPVALTSANRSSEQSTLNVGEF--EKLWPALGAVFDGG--QLGLREEQR 212

Query: 178 --STIVNVQCEKKVRILRPG 195
             ST++++    + +I+R G
Sbjct: 213 AASTVIDLSQVGQYKIIRKG 232


>gi|110669557|ref|YP_659368.1| DNA binding protein; translation factor [Haloquadratum walsbyi DSM
           16790]
 gi|109627304|emb|CAJ53794.1| probable DNA binding protein; probable translation factor
           [Haloquadratum walsbyi DSM 16790]
          Length = 235

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 6/177 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS+ L  A   + +G  +  PTETVYGL VD+ NP AI+R+++ K R   NPL   V  +
Sbjct: 31  DSDVLSAAVRAIKSGELVVYPTETVYGLGVDALNPDAIKRVFDTKGRTYDNPLSLAVESV 90

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126
           S V +H +    ++   K F PGP+T++++   +T +  + TA       R+P       
Sbjct: 91  SAVARHTNPSERAMQFIKAFLPGPVTVIVEC--STAVPDILTAGRDRVGIRIPDHHVALS 148

Query: 127 LIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           L+E     P+   SAN+SG  SI +  ++L+ SI + + ++++ G    G EST+V+
Sbjct: 149 LLERAAPTPITATSANQSGTGSIVDT-NMLAQSIQQNVAVVLEAG-ETTGTESTVVD 203


>gi|77919164|ref|YP_356979.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter carbinolicus DSM
           2380]
 gi|77545247|gb|ABA88809.1| translation factor SUA5 [Pelobacter carbinolicus DSM 2380]
          Length = 204

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E +  G  +A PT+T+YGL  D  N   I+R+Y+IK+R    P     +D+S V 
Sbjct: 15  ISRVVECIKQGGIVAYPTDTIYGLGCDIFNRKGIKRIYQIKERVHRKPFSFICADLSDVA 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V   +  + K + PGP T VL+  +T  +  L     KT   R+P    +  ++  
Sbjct: 75  NYAQVSNFAFKIMKRYLPGPYTFVLE--ATRVVPDLLVTKQKTVGIRIPSNPISLAIVRE 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            GHPL   SAN SG+    +   ++   + K+I +++DGGI K G  ST++++  +  + 
Sbjct: 133 LGHPLVTTSANLSGEEPCCD-PSLIEEELGKQINMVVDGGIIK-GEASTVISL-IDDNIE 189

Query: 191 ILRPGGLEIETLKR 204
           +LR G  +I  + +
Sbjct: 190 VLRQGAGDISWIHQ 203


>gi|312375719|gb|EFR23031.1| hypothetical protein AND_13789 [Anopheles darlingi]
          Length = 247

 Score = 92.4 bits (228), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 12/200 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +++ITD +A+R+A   L++G  IA+PT+TVYGLA  + NP AI++LY IK R    P+  
Sbjct: 26  LIAITDGSAIRQAANLLESGQVIALPTDTVYGLACSANNPAAIQKLYAIKGRHEQKPVAI 85

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V+D   ++     D L   L +   PG +T+V+      D +P     ++    R+P  
Sbjct: 86  CVADFDDLRYWGQADHLPDALLRQLLPGAVTIVVRKSLHLD-NPFLNPGIEKIGIRIPDF 144

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177
            F + +   + +P+A+ SAN+S   S  NV       +   +  + DGG  ++G      
Sbjct: 145 KFIRDVSRAFRYPIALTSANKSACQSTLNVHEF--QCLWSSLGAVFDGG--QLGQSDEQR 200

Query: 178 --STIVNVQCEKKVRILRPG 195
             ST++++  +   +++R G
Sbjct: 201 AASTVIDLSEDGSYQLIRAG 220


>gi|189485673|ref|YP_001956614.1| Sua5-related translation factor [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287632|dbj|BAG14153.1| Sua5-related translation factor [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 202

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 7/200 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A +K  E +  G    +PT+TVYG AVD+ N  A + +Y+IK R      I  V DI
Sbjct: 9   DKMAYKKVAEVIRNGGIAIVPTDTVYGFAVDAFNIEAQKVVYKIKGRSHKKSFILMVPDI 68

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
             ++    +   +L +AK FWPG LTL+   L TT++  + +   K    R+P   F  K
Sbjct: 69  ESIRILVEIPEKALKIAKRFWPGQLTLI---LPTTEMGKILSGGKKDLGVRIPDSKFMLK 125

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G P+   S N S + S  N+   L     + + + +DGG  +   EST++++  +
Sbjct: 126 LLKEMGSPVFTTSVNMSNKKSAKNIDETLRFD--EMVDIAVDGGQCRFSFESTVIDM-VK 182

Query: 187 KKVRILRPGGLEIETLKRAI 206
               ++R G L+ + + + I
Sbjct: 183 FPYMVVRRGCLDTDKILKCI 202


>gi|313899365|ref|ZP_07832876.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2]
 gi|312955818|gb|EFR37475.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2]
          Length = 214

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 6/200 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++  E L  G  +A PT+TV+GL V   N  A+R+L E K RP   P+   V+D+
Sbjct: 17  DKKDVKEVAELLKNGQVVAFPTDTVFGLGVIYENEEALRKLKESKGRPENKPIPTMVADV 76

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +K  A +   ++ LA  F PG  T++L    T  +    T    T   R+P   F  +
Sbjct: 77  EQMKCIAQMPAEAVALADAFMPGAFTMILKKQET--LPDYVTNGFPTVGIRMPDDPFVLR 134

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G PL + SANRSG+ +    + +L     +   +++  G +K  L STIV++  E
Sbjct: 135 LIKECGKPLLVTSANRSGEETGVRDEQVLEQLDGRIDAIVL--GEAKGKLASTIVDM-SE 191

Query: 187 KKVRILRPGGLEIETLKRAI 206
           ++ RI+R G +  + +K+ +
Sbjct: 192 EEPRIVREGPISADDIKKVL 211


>gi|325528913|gb|EGD05947.1| putative translation factor [Burkholderia sp. TJI49]
          Length = 195

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 24/173 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+           VD L     
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGG--DPGYWVDALPADAQ 84

Query: 85  KL---FWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY----- 131
           KL   FWPGPLTL+L        HP      +    +   R P     + L+  +     
Sbjct: 85  KLIDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRG 138

Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           GH  +A PSANR G +S T  +H+       +   ++DGG S++G+ESTIV++
Sbjct: 139 GHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTIVDL 189


>gi|224000475|ref|XP_002289910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975118|gb|EED93447.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 410

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 15/234 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L  A E L +G  ++ PTETVYGL   + +P A++R+++ K+RP  +PLI HV+   + 
Sbjct: 51  SLTTAGERLRSGHLVSFPTETVYGLGCHALDPVAVQRVFDAKERPLSDPLIVHVTSQQIQ 110

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +           L   F+PGPLT+V    +   I  +  AN      R P     + LI+
Sbjct: 111 QMQQLEKQALQTLTASFFPGPLTIVAK--AKPSIPQILMANTGYVACRSPSHPIARALIK 168

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV-NVQCEKK 188
               P+A PSAN+ G +S T  +H++   + +E   I D  + ++G+EST+  +      
Sbjct: 169 CAKCPIAAPSANKFGHVSPTLARHVM-DDLGREDVWISDSAVCQVGVESTVAKDNGFVGS 227

Query: 189 VRILRPGGLEIETLKRAI---SVELEYCVDET--STPQ-----SPGMLKSHYAP 232
           + +LR G +    ++ A+   +++  + V +    TP+     +PG    HY+P
Sbjct: 228 ITVLRHGAISSAAIRVALKQSNLDQYFDVKDAVQYTPENVNNVAPGQTVKHYSP 281


>gi|325694522|gb|EGD36431.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK150]
          Length = 196

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 98/179 (54%), Gaps = 8/179 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L HL + F PGPLT++L   +   +     + ++T  FR+P    T  LI+ YG PL 
Sbjct: 68  SYLDHLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIQKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  E K  ILR G
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDA-ALTGQDSTILDLSGE-KAHILRQG 180


>gi|94265014|ref|ZP_01288783.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
 gi|93454503|gb|EAT04788.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
          Length = 208

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 7/178 (3%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           + GL +A PTET YGLAVD  NP A++RL+  K+RPA  P++  V+   M+    S  P 
Sbjct: 25  EGGL-VAFPTETYYGLAVDPFNPVALKRLFTAKQRPAQKPILNLVATQQMLPTLVSRVPE 83

Query: 80  SL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137
           +   L   FWPGPLTL+    +  ++    TAN  T   R+      + L    G P+  
Sbjct: 84  AYRELMAAFWPGPLTLIFP--ARPELPAALTANSGTVGVRISSHPLAQALAAACGGPITA 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            SAN SG+ +  +   +  +     I LI+DGGI+  G  ST+V +  ++++R++R G
Sbjct: 142 TSANLSGRAAAVSAAEV-EAQFGSGIDLILDGGITPGGTGSTLVGL-VDEELRLIREG 197


>gi|94269403|ref|ZP_01291453.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
 gi|93451234|gb|EAT02135.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
          Length = 212

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 7/178 (3%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           + GL +A PTET YGLAVD  NP A++RL+  K+RPA  P++  V+   M+    S  P 
Sbjct: 29  EGGL-VAFPTETYYGLAVDPFNPVALKRLFTAKQRPAQKPILNLVATQQMLPTLVSRVPE 87

Query: 80  SL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137
           +   L   FWPGPLTL+    +  ++    TAN  T   R+      + L    G P+  
Sbjct: 88  AYRELMAAFWPGPLTLIFP--ARPELPAALTANSGTVGVRISSHPLAQALAAACGGPITA 145

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            SAN SG+ +  +   +  +     I LI+DGGI+  G  ST+V +  ++++R++R G
Sbjct: 146 TSANLSGRAAAVSAAEV-EAQFGSGIDLILDGGITPGGTGSTLVGL-VDEELRLIREG 201


>gi|312865283|ref|ZP_07725511.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus downei F0415]
 gi|311099394|gb|EFQ57610.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus downei F0415]
          Length = 199

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 12/209 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D  AL+     L  G  + +PTETVYGL   + + +A++++Y +K RPA   +  +V+
Sbjct: 1   MADLEALKAT---LAEGGAVVLPTETVYGLFAKALDESAVKKVYALKGRPADKAMNLNVA 57

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               +  ++   P  L  L + F+PGPLT++L   +   +     A L +  FR+P    
Sbjct: 58  SYQDILDYSQDQPSYLEKLYQAFFPGPLTIILK--ANDKVPGWVNAGLDSVGFRLPQHPV 115

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T++LI  +G PL  PSAN SGQ S     +I++    K   L  DG I   GL+STI+++
Sbjct: 116 TQELIAQFG-PLVGPSANISGQASGKVFANIMADFDQKVTGLADDGAIQ--GLDSTILDL 172

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEY 212
              K  +ILR G +  E L   +  EL+Y
Sbjct: 173 SGTKP-KILRQGAISKEDLLEVVP-ELKY 199


>gi|226500320|ref|NP_001148954.1| ischemia/reperfusion inducible protein [Zea mays]
 gi|195623606|gb|ACG33633.1| ischemia/reperfusion inducible protein [Zea mays]
          Length = 275

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 94/190 (49%), Gaps = 4/190 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL   V D+S + + 
Sbjct: 75  KATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVSDISRF 134

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A VD L   L     PGP+T+VL     + +       L +   RVP   F + ++   G
Sbjct: 135 ALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIVRGTG 194

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191
             LA+ SAN SGQ S   VK      +      + DGG+   G   STIV++      +I
Sbjct: 195 SALALTSANLSGQPSSVCVKDF--EGLWPHCSYVFDGGVLPSGRAGSTIVDLITPGVYKI 252

Query: 192 LRPGGLEIET 201
           LR G    ET
Sbjct: 253 LRDGSSRKET 262


>gi|302037883|ref|YP_003798205.1| putative dsRNA-binding protein [Candidatus Nitrospira defluvii]
 gi|300605947|emb|CBK42280.1| putative dsRNA-binding protein, predicted ribosome maturation
           factor [Candidatus Nitrospira defluvii]
          Length = 215

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 9/209 (4%)

Query: 3   IMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           ++  TD+     L    + LDA   +A+PTET YGLAV   +  A++ L E+K RPA  P
Sbjct: 4   VLPFTDTTCDLVLSDVRQVLDAHGVVALPTETYYGLAVRPTDTAALQHLMELKGRPADKP 63

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           ++  +     + +   S+ P +  L +LFWPGPLT+V    +  D+  L TA   T   R
Sbjct: 64  ILVLIGSPDQLPQLVRSIPPAAALLMELFWPGPLTIVFP--AAPDLPALLTAGTGTIGVR 121

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +      + +     PL   SANRS + S+     +   ++   + LI+DGG +  GL S
Sbjct: 122 LSPLLQLQHLLQRTGPLTGTSANRSSEPSLDTAAAV-QGALGAGVDLILDGGPTPGGLPS 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           T+V+ +   +  +LR G L  + ++ A++
Sbjct: 181 TMVDAR--DRPHLLRAGALPTDLIRAALA 207


>gi|242036585|ref|XP_002465687.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor]
 gi|241919541|gb|EER92685.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor]
          Length = 275

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 4/190 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL   V+D+S + + 
Sbjct: 75  KATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVADVSDISRF 134

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A VD L   L     PGP+T+VL     + +       L +   RVP   F + +    G
Sbjct: 135 ALVDHLPHGLLDSLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIARGAG 194

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191
             LA+ SAN SGQ S  +VK      +      + DGG+   G   STIV++      +I
Sbjct: 195 SALALTSANLSGQPSSVSVKDF--EGLWPHCSCVFDGGVLPSGRAGSTIVDLITPGVYKI 252

Query: 192 LRPGGLEIET 201
           LR G    ET
Sbjct: 253 LRDGSSRKET 262


>gi|125542795|gb|EAY88934.1| hypothetical protein OsI_10418 [Oryza sativa Indica Group]
          Length = 274

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 102/202 (50%), Gaps = 5/202 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            I+  T+ + + KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL 
Sbjct: 63  HILPATNDHVM-KAIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLA 121

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             V+D+  + + A VD L   L     PGP+T+VL   + + +       L++   RVP 
Sbjct: 122 ICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPD 181

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LEST 179
             F + +    G  LA+ SAN SG+ S  NVK      +      + DGGI   G   ST
Sbjct: 182 FDFIRAISRGAGSALALTSANLSGRPSSVNVKDF--EDLWPHCSYVFDGGILPSGRAGST 239

Query: 180 IVNVQCEKKVRILRPGGLEIET 201
           IV++      +ILR G    ET
Sbjct: 240 IVDLITPGVYKILRDGSSRQET 261


>gi|125717979|ref|YP_001035112.1| hypothetical protein SSA_1154 [Streptococcus sanguinis SK36]
 gi|125497896|gb|ABN44562.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 196

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ I  +   +   P
Sbjct: 8   LVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  SYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +EI  + D   S  G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEISGVEDDA-SLTGQDSTILDLSGEKAL-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREYI 187


>gi|324991174|gb|EGC23108.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK353]
          Length = 196

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ I  +   +   P
Sbjct: 8   LVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  SYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +EI  + D   S  G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEISGVEDDA-SLTGQDSTILDLSGEKAL-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|108706710|gb|ABF94505.1| yrdC protein, putative, expressed [Oryza sativa Japonica Group]
 gi|125585293|gb|EAZ25957.1| hypothetical protein OsJ_09812 [Oryza sativa Japonica Group]
 gi|215695443|dbj|BAG90626.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 274

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 5/202 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            I+  T+ + + KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL 
Sbjct: 63  HILPATNDHVM-KAIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLA 121

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             V+D+  + + A VD L   L     PGP+T+VL   + + +       L++   RVP 
Sbjct: 122 ICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPD 181

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LEST 179
             F + +    G  LA+ SAN SG  S  NVK      +      + DGGI   G   ST
Sbjct: 182 FDFIRAISRGAGSALALTSANLSGHPSSVNVKDF--EDLWPHCSYVFDGGILPSGRAGST 239

Query: 180 IVNVQCEKKVRILRPGGLEIET 201
           IV++      +ILR G    ET
Sbjct: 240 IVDLITPGVYKILRDGSSRQET 261


>gi|85000901|ref|XP_955169.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303315|emb|CAI75693.1| hypothetical protein, conserved [Theileria annulata]
          Length = 703

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 90/176 (51%), Gaps = 9/176 (5%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASV 76
            ++ G  IAIPTETVYGLA +     ++ R++ IK RP  +PLI HV       +H   V
Sbjct: 84  LMEPGGLIAIPTETVYGLAGNIHLENSLLRIFSIKDRPFNDPLIVHVHSFLYALRHLYDV 143

Query: 77  DP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           +     L L LA+ F PGPLT+V        I PL T        R P    T KL+E  
Sbjct: 144 NDVEAFLILFLAEKFAPGPLTIV--ARKAQSISPLLTNQTDFIAVRCPNNKVTLKLLEFI 201

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             PLA PSAN+ G IS T  +H+  +    E   I+D G   IG+ESTI+ +   K
Sbjct: 202 QVPLAAPSANKFGHISPTCPEHV-KNEFPNEDLYILDDGNCTIGIESTIIKLTSNK 256


>gi|226325557|ref|ZP_03801075.1| hypothetical protein COPCOM_03362 [Coprococcus comes ATCC 27758]
 gi|225206040|gb|EEG88394.1| hypothetical protein COPCOM_03362 [Coprococcus comes ATCC 27758]
          Length = 412

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 34/239 (14%)

Query: 108 STANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
           +T  L+T   R+P     ++LI   G  ++ PSAN SG+ S T  +H+ +  +  +I +I
Sbjct: 13  TTGGLETVAVRMPDDEIARELILAGGGYVSAPSANTSGRPSPTTAQHV-AEDLSGKIEMI 71

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-------ST 219
           +DGG   IG+ESTI+++     + ILRPG +  E L   I    E  VDET         
Sbjct: 72  LDGGSVDIGVESTILDMTVTPPM-ILRPGAITKEMLSEVIG---EVAVDETLISENSTKA 127

Query: 220 PQSPGMLKSHYAPRSQVRLRAIHVNPREAL----------IRFG--------NVPIKNIE 261
           P++PGM   HYAP++++ +  +   P EA+          +R G        N  +    
Sbjct: 128 PKAPGMKYRHYAPKAEMII--VDGEPEEAVRAIKQIAYEQVRLGYKVGIIASNESVDQYT 185

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++    S+  + K  A NL+  ++  D+     I   + P  G+G AI NRL +AA 
Sbjct: 186 TGVVKCIGSRVNE-KTVARNLYKVLREFDEEEVDYIYSEAFPEAGIGTAIMNRLGKAAG 243


>gi|221059790|ref|XP_002260540.1| dsRNA binding protein [Plasmodium knowlesi strain H]
 gi|193810614|emb|CAQ42512.1| dsRNA binding protein, putative [Plasmodium knowlesi strain H]
          Length = 545

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 19/228 (8%)

Query: 5   SITDSNALRKACE-FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + ++  LRK  +  ++A   + +PTETVYGL  +S +  ++R ++E+K RP  +P+I H
Sbjct: 9   DLLENEQLRKRLKAHIEADCLVGMPTETVYGLGGNSLSEKSLRNIFEMKNRPVSDPIISH 68

Query: 64  VSDISMVKK---HASV-DPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           V DI        H +V +  +++ L+K FWPGPL+++    +  ++  + TA+      R
Sbjct: 69  VYDIKQAFDQLYHVNVFEMFTIYTLSKYFWPGPLSIIAK--AKKELPLILTAHTGFCAVR 126

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      ++I+    P+A PSAN+   IS T   H+      KE  +I D G   IG+E
Sbjct: 127 MPRNNIAIEIIKVSQVPIAAPSANKFQHISPTTSAHVF-QEFEKEKIIIFDDGQCDIGIE 185

Query: 178 STIVNVQCEKKVRILRP-----GGLEIETLK-RAISVELEY---CVDE 216
           ST++ +   KK    +P      G   E ++   ++ + EY   C DE
Sbjct: 186 STVLKLVKFKKTGDRKPNRLSGAGETCEAIQEEEVTTDDEYEKECTDE 233


>gi|167585582|ref|ZP_02377970.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ubonensis Bu]
          Length = 214

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 94/185 (50%), Gaps = 25/185 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV---SDISMVKKHASVDPLSL 81
           +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+    D     +    D  + 
Sbjct: 27  VAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWVEALPDD--AR 84

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPCG-FTKKLIETY----- 131
            L   FWPGPLTL+L        HP      +    +   R P     + L++ +     
Sbjct: 85  KLIDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHPVAQALLDAFSARRG 138

Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           GH  +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       
Sbjct: 139 GHGGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGPSEVGIESTILDL-SRGFPA 195

Query: 191 ILRPG 195
           +LRPG
Sbjct: 196 LLRPG 200


>gi|158285728|ref|XP_308435.3| AGAP007397-PA [Anopheles gambiae str. PEST]
 gi|157020133|gb|EAA04653.3| AGAP007397-PA [Anopheles gambiae str. PEST]
          Length = 272

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 10/200 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++S    +A   A   L AG  IAIPT+TVYGL   + NP AI RLY IK R  + P+ 
Sbjct: 58  KVISTNRKDAKAIAVAKLQAGEVIAIPTDTVYGLTCSANNPEAIHRLYNIKGRHELKPVA 117

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             V+ I  V++    D L+  L    +PG +TLV+   S  +   L+             
Sbjct: 118 ICVASIEDVRQWGETDHLNDELLGELFPGAVTLVVRRSSKLNNPALNPGVANIGIRITEN 177

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177
            F + + E +  P+A+ SAN+S   S  NV+      +  E+  + DGG  ++GL     
Sbjct: 178 KFIQHVCEAFQQPIALTSANKSSSKSTLNVEEF--KELWGELGAVFDGG--QLGLSEEQR 233

Query: 178 --STIVNVQCEKKVRILRPG 195
             ST++++   ++ +I+R G
Sbjct: 234 AASTVIDLSEPERYKIIRWG 253


>gi|322435977|ref|YP_004218189.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163704|gb|ADW69409.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9]
          Length = 214

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           +++GL +A+PT+T YGLAVD  N  A+ R+Y +K R    PL   ++D++     A   D
Sbjct: 25  IESGLLVALPTDTFYGLAVDPVNLRAVERIYHLKNRARHKPLSLLIADVAQAYGLARECD 84

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
                LA+ FWPGPLT+++   S   +    TAN      RVP     + ++   G P+ 
Sbjct: 85  TAFDRLAERFWPGPLTIIVKAGSKLPLR--VTANTGNVALRVPEAPIARAVVAKLGLPIT 142

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ-CEKKVRILRPG 195
             SAN  G    T+   +    +  +IPLI+DGG +   + +TIV++        ILR G
Sbjct: 143 ATSANLEGHAECTSASGV-REQLGDKIPLIVDGGPTARTVATTIVDLSGGGNSWTILREG 201

Query: 196 GL 197
            +
Sbjct: 202 AI 203


>gi|156101636|ref|XP_001616511.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805385|gb|EDL46784.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 560

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 14/201 (6%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-SMVK 71
           R+    ++A   + +PTETVYGL  +S +  ++R ++++K RP  +P+I HV D+     
Sbjct: 23  RRLRAHIEADCLVGMPTETVYGLGGNSLSERSLRNIFQMKNRPVSDPIISHVYDVRQAFD 82

Query: 72  KHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
           +   V+P  +     L K FWPGPL+++    +  ++  + TA+      R+P      +
Sbjct: 83  QLYHVNPFEMFVIYSLGKSFWPGPLSIIAK--AKKEVPLILTAHTGFCAVRMPRNNIALE 140

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+    P+A PSAN+   IS T   H+      + + LI D G   IG+EST++ +   
Sbjct: 141 IIKVSQVPIAAPSANKFQHISPTTAAHVYKEFESENV-LIFDDGQCDIGIESTVLKLLKF 199

Query: 187 KKV-----RILRPGGLEIETL 202
           +KV       LR GG  +E +
Sbjct: 200 RKVGGAQSNELRGGGQILEEI 220


>gi|297569316|ref|YP_003690660.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925231|gb|ADH86041.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 221

 Score = 89.4 bits (220), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 101/201 (50%), Gaps = 8/201 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   +  G  +A PTET YGLAVD  N  A+ RL+ +K+R    P++C V D   + 
Sbjct: 16  LEQAAAIIRRGGIVAFPTETYYGLAVDPFNREALSRLFALKRRAPDKPILCLVPDREHLF 75

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128
             A S+ P    L + FWPGPLTL+    +  +  P+S T    T   R+       +L 
Sbjct: 76  SLADSIPPSYEPLMEAFWPGPLTLI---FTAREEVPVSLTGYSGTVGVRLSSHPVAARLA 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           + YG  +   SAN SG  +  N   +  + +  ++  I+DGG +  G  ST+V V+ E+ 
Sbjct: 133 QIYGGAITATSANFSGHPAAVNAAEV-GAQLGPDVDYILDGGETPGGAGSTLVGVENEQL 191

Query: 189 VRILRPGGLEIETLKRAISVE 209
           V + RPG +  + L   +  E
Sbjct: 192 V-LRRPGVITRQELNDVLGPE 211


>gi|332360427|gb|EGJ38238.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK355]
          Length = 196

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  SYLEQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +E+  + D   S  G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQRIM-MDFQEEVSGVEDDA-SLTGQDSTILDLSGEKAL-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|332361223|gb|EGJ39027.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1056]
          Length = 196

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L HL + F PGPLT++L   +   +     +  +T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLDHLYQAFLPGPLTIILQ--ANDRVPAWINSGKETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   S  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDD-SLTGQDSTILDLSGEKAL 175

Query: 190 RILRPG 195
            ILR G
Sbjct: 176 -ILRQG 180


>gi|157150566|ref|YP_001450439.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075360|gb|ABV10043.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 206

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 11  MDKIENILAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 70

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + + T  FR+P    T  LI 
Sbjct: 71  AFSKNQPTYLDQLYQAFLPGPLTIILQ--ANDQVPTWINSGMDTVGFRIPKHPVTLDLIR 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG++S T+ + I+     +E    ++   +  G +STI+++  E K 
Sbjct: 129 KYG-PLIGPSANLSGKVSGTSFQQIVMD--FQEQVSGVEDDAALTGQDSTILDLSGE-KA 184

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 185 HILRQGAIAREDI 197


>gi|322385291|ref|ZP_08058936.1| Sua5/YciO/YrdC family protein [Streptococcus cristatus ATCC 51100]
 gi|321270550|gb|EFX53465.1| Sua5/YciO/YrdC family protein [Streptococcus cristatus ATCC 51100]
          Length = 196

 Score = 89.0 bits (219), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEDIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  + + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  SYLEQVYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  E K RILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVED-DTALTGQDSTILDLSGE-KARILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|223946371|gb|ACN27269.1| unknown [Zea mays]
          Length = 275

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL   V D+S + + 
Sbjct: 75  KATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVSDISRF 134

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A VD L   L     PGP+T+VL     + +       L +   RVP   F + +    G
Sbjct: 135 ALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSIARGTG 194

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191
             LA+ SAN SGQ S   VK      +      + DGG+   G   STIV++      +I
Sbjct: 195 SALALTSANLSGQPSSVCVKDF--EGLWPHCSYVFDGGVLPSGRAGSTIVDLITPGVYKI 252

Query: 192 LRPGGLEIET 201
           LR G    ET
Sbjct: 253 LRDGSSRKET 262


>gi|326431169|gb|EGD76739.1| yrdC domain-containing protein [Salpingoeca sp. ATCC 50818]
          Length = 388

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 10/193 (5%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L AG  I +PT+T+YGLA  +++   +RR+Y IK R  + P+   V D++ +  +A
Sbjct: 104 AVETLRAGGVIGVPTDTIYGLACLAQSTQGVRRIYSIKGRSELKPIAICVHDVAAIGAYA 163

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
            +  +   L +   PGP+T+VL       ++P    +      RVP   F +KL++  G 
Sbjct: 164 ELS-VPERLLRALLPGPVTVVLPRKPA--LNPELNPHTSLIGVRVPDFPFVRKLVQALGE 220

Query: 134 PLAIPSANRSGQ---ISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           PLA+ SANRSG+   IS +   H+    +   +   I   G S++G  ST+V++   K  
Sbjct: 221 PLALTSANRSGEQSCISSSEFSHLWGELNAVYDAGTIETSGASRLG--STVVDLSRGKAY 278

Query: 190 RILRPGGLEIETL 202
           +++R G  E  TL
Sbjct: 279 QVIRGGSAEEATL 291


>gi|270308141|ref|YP_003330199.1| translation factor SUA5 [Dehalococcoides sp. VS]
 gi|270154033|gb|ACZ61871.1| translation factor SUA5 [Dehalococcoides sp. VS]
          Length = 213

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 100/199 (50%), Gaps = 7/199 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N +  A   L  G  +  PT+TVY +   +RN  A+ R+++IK R     L   + D+S 
Sbjct: 12  NQITNAVRILKEGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDVSQ 71

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A V P L+  LA  +WPG LTLVL    T +I    T   +T   R+P      ++
Sbjct: 72  INQVAKVFPELARKLAAEYWPGGLTLVLP--KTNNIPLELTGGNETVAIRIPNQPAVIEM 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   SAN SG  S  N      S +   +  I+DGG    G+ESTIV V    
Sbjct: 130 LKRIGEPITGTSANLSGCKSSLNAAE-ARSQLGDRVDFILDGGQVSGGVESTIVAVN-NN 187

Query: 188 KVRILRPGGL-EIETLKRA 205
           +++I+R G + E + LK A
Sbjct: 188 ELKIIRQGAIKEADILKTA 206


>gi|325689726|gb|EGD31730.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK115]
          Length = 196

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP+   L  +V+ +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPSDKALNLNVASLEEIYNFSKNRP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  CYLDQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPNHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +E+  + D      G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDDF-LTGQDSTILDLSGEKAL-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|195336176|ref|XP_002034718.1| GM19771 [Drosophila sechellia]
 gi|194126688|gb|EDW48731.1| GM19771 [Drosophila sechellia]
          Length = 325

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 106/204 (51%), Gaps = 19/204 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++ D  AL+ A + L  G  IA+PT+TVYGLA D+ N TAI+RLYEIK R    P+  
Sbjct: 109 VCAVGDKAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 168

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRV 119
            V +IS +++      LS  L     PGPLT+V++    LS   ++P ST+ +     R+
Sbjct: 169 CVHNISALRRFGQAAHLSDELLTRLLPGPLTIVIERTVQLSNRFLNP-STSKIG---IRI 224

Query: 120 P-CGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-- 175
           P   F + L   +   PLA+ SANRS   S   V      S+  ++  + D G  +IG  
Sbjct: 225 PDFNFMRDLCGVWQEQPLALTSANRSSAPSSLQVSEF--RSLWPQLGAVFDAG--RIGLT 280

Query: 176 ----LESTIVNVQCEKKVRILRPG 195
               L ST++++       I+R G
Sbjct: 281 EERRLASTVIDLATPGYFEIVRAG 304


>gi|224368045|ref|YP_002602208.1| hypothetical protein HRM2_09310 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690761|gb|ACN14044.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 224

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 6/189 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +AC+ L AG  +  P + +YG+AVD+ NP AI R++ IK+RP  NP++  ++D S
Sbjct: 19  GDFISRACDILRAGGIVIFPAKCLYGIAVDAFNPEAISRVFGIKQRPRKNPILVLINDRS 78

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++      P +   L   FWPG +T+V + L    +  + TA+      R+P     K 
Sbjct: 79  DLEGLVKKVPKTARILMDRFWPGDITIVFEALDR--LPGILTAHTGKIGIRMPQHPVAKA 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L    G P+   SAN SG   I+ ++  L   +   + LI+D G  K G  ST+V+V  +
Sbjct: 137 LTRGLGKPITGTSANLSGAEGISRIQD-LPPVLVDRVDLILDAGRLKGGKGSTVVDVTGQ 195

Query: 187 KKVRILRPG 195
            +V +LR G
Sbjct: 196 -QVLVLREG 203


>gi|195585167|ref|XP_002082361.1| GD25261 [Drosophila simulans]
 gi|194194370|gb|EDX07946.1| GD25261 [Drosophila simulans]
          Length = 248

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 13/201 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++ D  AL+ A + L  G  IA+PT+TVYGLA D+ N TAI+RLYEIK R    P+  
Sbjct: 32  VCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 91

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V +I  +++      LS  L     PGPLT+V++  +      L+ +  K    R+P  
Sbjct: 92  CVHNIEALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSKIG-IRIPDF 150

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----- 175
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G  +IG     
Sbjct: 151 NFMRDLCAVWQEQPLALTSANRSSAPSSLQVSEF--RSLWPQLGAVFDAG--RIGLTEER 206

Query: 176 -LESTIVNVQCEKKVRILRPG 195
            L ST++++       I+R G
Sbjct: 207 RLASTVIDLATPGYFEIVRAG 227


>gi|117926737|ref|YP_867354.1| translation factor SUA5 [Magnetococcus sp. MC-1]
 gi|117610493|gb|ABK45948.1| translation factor SUA5 [Magnetococcus sp. MC-1]
          Length = 211

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 13/207 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-I 67
           S  LR A + L+ G  +A PTET+YGL VD  NP A+RRL ++K R A   LI  V + +
Sbjct: 10  SEQLRHAVQLLEGGGILAYPTETLYGLGVDPFNPQAVRRLLDLKGREAKKGLILLVPNSV 69

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +++     ++ ++  L + FWP PLTLVL   +   +  L T        R     + + 
Sbjct: 70  ALLPLVQPLEAVAQRLIEHFWPAPLTLVLP--AQAGLSSLLTGGTGLVAVRHSSSPYVQA 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKE----IPLIIDGGISKIGLESTIVN 182
           L+  +  PL   SAN SG    + V+H     I  E    + +I+ G      L ST+V 
Sbjct: 128 LMAHWQRPLVSTSANPSG----SQVQHWSPERIAAEWGGQVDMILAGPYDDGALASTVVK 183

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE 209
           V   + V +LR G +    L++ I +E
Sbjct: 184 VIAGRGV-VLREGAITCAQLQQIIPIE 209


>gi|194881657|ref|XP_001974938.1| GG20842 [Drosophila erecta]
 gi|190658125|gb|EDV55338.1| GG20842 [Drosophila erecta]
          Length = 251

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 100/198 (50%), Gaps = 13/198 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D  ALR A + L +G  IA+PT+TVYGLA D+ N TAI+RLYEIK R    P+   V 
Sbjct: 38  VGDEAALRLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAICVH 97

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           +I  +++      LS  L     PGPLT+V++  +      L+ +  K    R+P   F 
Sbjct: 98  NIEALRRFGQAVHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSKIG-IRIPDFNFM 156

Query: 125 KKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LE 177
           + L   +   PLA+ SANRS   S   V      S+  ++  + D G  +IG      L 
Sbjct: 157 RDLCAVWHEQPLALTSANRSSAPSSLQVSEF--RSLWPQLGAVFDAG--QIGLTEERRLA 212

Query: 178 STIVNVQCEKKVRILRPG 195
           ST++++       I+R G
Sbjct: 213 STVIDLATPGYFEIVRAG 230


>gi|327470057|gb|EGF15521.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK330]
          Length = 196

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  SYLKQLYQTFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLNLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDA-ALTGQDSTILDLSGEKAL-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|57234410|ref|YP_181562.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes
           195]
 gi|57224858|gb|AAW39915.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes
           195]
          Length = 213

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 8/190 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L  G  +  PT+TVY +   + N  A+RR+++IK R     L   + DIS + 
Sbjct: 14  IDQAVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDISQIN 73

Query: 72  KHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128
           + A V  PL+  LAK +WPG LTLV   L  TD  PL  T   +T   R+P      +++
Sbjct: 74  QVAKVFPPLASKLAKEYWPGGLTLV---LPKTDNIPLELTGGNETVAIRIPNQPAVIEML 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+   SAN SG  S  N        +   +  I+DGG    G+ESTI+ V  +  
Sbjct: 131 KRVGEPVTGTSANLSGCKSSLNAAE-AEKQLGDRVDFILDGGQVSGGVESTIIAVNPD-G 188

Query: 189 VRILRPGGLE 198
           ++I+R G ++
Sbjct: 189 LKIIRQGAIK 198


>gi|262282283|ref|ZP_06060051.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. 2_1_36FAA]
 gi|262261574|gb|EEY80272.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. 2_1_36FAA]
          Length = 196

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + + T  FR+P    T  LI 
Sbjct: 61  AFSKNHPTYLDQLYQAFLPGPLTIILQ--ANDQVPTWINSGMDTVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG++S T+ + I+     +E    ++   +  G +STI+++  E K 
Sbjct: 119 KYG-PLIGPSANLSGKVSGTSFQQIVMD--FQEQVSGVEDDAALTGQDSTILDLSGE-KA 174

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 175 HILRQGAITREDI 187


>gi|139949035|ref|NP_001077336.1| yrdC domain-containing protein, mitochondrial [Danio rerio]
 gi|134025291|gb|AAI34956.1| Zgc:162301 protein [Danio rerio]
          Length = 235

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 12/182 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  +A+PT+T+YGLA  ++N  AIRR+Y+IK R    PL   V +I  + K+  V  
Sbjct: 38  LKAGQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCKVS- 96

Query: 79  LSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           +   L +   PGP+TLVL+  +T   D++P +    K    R+P   F ++L +    PL
Sbjct: 97  VKDRLLRDLLPGPVTLVLERSATLNGDLNPFT----KLIGVRIPDHPFMRRLCQMCDTPL 152

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGG--ISKIGLESTIVNVQCEKKVRILR 193
           A+ SAN S Q S           +   + +++DGG    K  L ST+V++    + RI+R
Sbjct: 153 ALTSANVSTQSSTVAANEF--EDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRIIR 210

Query: 194 PG 195
           PG
Sbjct: 211 PG 212


>gi|85858566|ref|YP_460768.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB]
 gi|85721657|gb|ABC76600.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB]
          Length = 217

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 7/195 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+   E L  G  +A PTET YGL  D+ N  AI +++ IK R   NP+   + D   + 
Sbjct: 19  LQHVAENLRKGRVVAYPTETFYGLGADAGNERAIEKIFSIKGRQFNNPIPLIIGDRDELD 78

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              +  P +   L  +FWPGPLTLV    ++ ++ P  TAN      R+      + L  
Sbjct: 79  SLVTAIPEAAQRLIHVFWPGPLTLVFR--ASKNVSPRLTANTGLIGIRISSHPIARSLAR 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           + G PL   SAN SGQ   T   H ++ ++   I  I+DGG ++    ST+VN+  +  +
Sbjct: 137 SLGAPLTATSANFSGQKESTTA-HEVARTLGSLIDGIVDGGQTRGNKGSTVVNIAVDPPL 195

Query: 190 RILRPGGL-EIETLK 203
            ILR G + EIE  K
Sbjct: 196 -ILRVGVITEIEIRK 209


>gi|78707274|ref|NP_001027444.1| CG33786 [Drosophila melanogaster]
 gi|17946164|gb|AAL49123.1| RE55868p [Drosophila melanogaster]
 gi|71911685|gb|AAF57437.2| CG33786 [Drosophila melanogaster]
 gi|220948934|gb|ACL87010.1| CG33786-PA [synthetic construct]
 gi|220957748|gb|ACL91417.1| CG33786-PA [synthetic construct]
 gi|228480314|gb|ACQ41870.1| MIP03842p [Drosophila melanogaster]
          Length = 248

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 17/222 (7%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++ D  AL+ A + L  G  IA+PT+TVYGLA D+ N TAI++LYEIK R    P+  
Sbjct: 32  VCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAI 91

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V +I  +++      LS  L     PGPLT+V++  S      L+ +  K    R+P  
Sbjct: 92  CVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSKIG-IRIPDF 150

Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----- 175
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G  +IG     
Sbjct: 151 NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEF--RSLWPQLGAVFDAG--RIGLTEER 206

Query: 176 -LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
            L ST++++       I+R G      LK  +S+  E+ + E
Sbjct: 207 RLASTVIDLATPGYYEIVRAG----VALKPTLSLMEEFGIRE 244


>gi|71027715|ref|XP_763501.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350454|gb|EAN31218.1| hypothetical protein, conserved [Theileria parva]
          Length = 454

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 94/185 (50%), Gaps = 9/185 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-----SMVKKHASVDPL 79
           IAIPTETVYGLA +     +I R+++IK+RP  +PLI HV        ++   +     +
Sbjct: 85  IAIPTETVYGLAGNIHLDESILRIFKIKERPLDDPLIVHVHSFLYALRNLYNTNIVESFI 144

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
            L+LA+ F PGPLT+V     +  +  L T        R P    T KL+E    PLA P
Sbjct: 145 VLYLARKFAPGPLTIVAR--RSQAVSALLTNGSDFIAVRCPNNQITLKLLEFSEIPLAAP 202

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN+ G IS T  +H+  +    E   I+D G   IG+ESTI+ V  +       PG  E
Sbjct: 203 SANKFGHISPTCPEHV-KNEFPNENLHILDDGNCSIGIESTIIKVYSDDNHYYYHPGHTE 261

Query: 199 IETLK 203
           +  + 
Sbjct: 262 LSNVN 266


>gi|324994442|gb|EGC26355.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK678]
          Length = 196

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ I  +   +   P
Sbjct: 8   LVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  SYLKQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +E+  + D      G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDAYL-TGQDSTILDLSGEKAL-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|195429998|ref|XP_002063044.1| GK21591 [Drosophila willistoni]
 gi|194159129|gb|EDW74030.1| GK21591 [Drosophila willistoni]
          Length = 222

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 9/207 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + S+ +  AL  A + L AG  IA+PT+TVYGLA D+ N  AI+RLYEIK R    P+  
Sbjct: 6   VCSVDEERALDLARQCLLAGQIIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 65

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V +I  ++++   D L   L     PGPLT+V++       +PL   +      R+P  
Sbjct: 66  CVHNIKALRRYGQADHLGDELLTRLLPGPLTIVIERAPALS-NPLLNPSTSKIGIRIPDF 124

Query: 122 GFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGL 176
            F +KL   +   PLA+ SANRS + S   V+      +  ++  I D G      +  L
Sbjct: 125 QFIRKLCGVWHEQPLALTSANRSSEPSSLQVEEF--RCLWPQLGGIFDAGPIGLTEERRL 182

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            ST++++       I+R G    ET K
Sbjct: 183 ASTVIDLAKPGSYTIVRAGVALKETRK 209


>gi|146318504|ref|YP_001198216.1| translation factor (SUA5) [Streptococcus suis 05ZYH33]
 gi|146320695|ref|YP_001200406.1| translation factor (SUA5) [Streptococcus suis 98HAH33]
 gi|145689310|gb|ABP89816.1| Putative translation factor (SUA5) [Streptococcus suis 05ZYH33]
 gi|145691501|gb|ABP92006.1| Putative translation factor (SUA5) [Streptococcus suis 98HAH33]
 gi|292558285|gb|ADE31286.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis GZ1]
 gi|319758068|gb|ADV70010.1| putative translation factor (SUA5) [Streptococcus suis JS14]
          Length = 202

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 15/208 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68
           + K    L+ G  + +PTETVYGL   + N  A+ R+Y++K+RP   AMN  + +++DI 
Sbjct: 3   MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 62

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
              ++    P  L  L   F PGPLT++L   +  ++     + L T  FR+P    T +
Sbjct: 63  FFSQNT---PFFLEKLYNRFMPGPLTIILK--ANDNVPFWVNSGLDTVGFRLPNHEQTLR 117

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PL  PSAN SG  S      I  +    ++P I D   +  G++STI+++  +
Sbjct: 118 LISETG-PLIGPSANISGNESGKKFSDI-QAQFSVDLPGIEDDQ-ALTGIDSTILDLSGQ 174

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV 214
            K RILR G +  E +++AI  E+E+ V
Sbjct: 175 -KARILRQGAISREEIQKAIP-EIEFEV 200


>gi|237737623|ref|ZP_04568104.1| SUA5 protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419503|gb|EEO34550.1| SUA5 protein [Fusobacterium mortiferum ATCC 9817]
          Length = 212

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 10/194 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  I  PT+TVYG+     +   I+ +Y+ K+R   +PLI  VSD+  +++ A V+ 
Sbjct: 22  LKAGELIIYPTDTVYGIGGVISSEETIKNIYKAKERSFKSPLIVLVSDVKKIEEVAYVEE 81

Query: 79  LSLH-LAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
            +   + KL   FWPG LT++L       I  + TA+  T   R+P     +K+I+  G 
Sbjct: 82  KNREAIEKLIAKFWPGGLTIILK--KKEWIPNIMTADGDTVGVRMPALNIAQKIIKAAGG 139

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            L   SAN SG+         LS +  + + +I+DGG S +G ESTI+++    K +ILR
Sbjct: 140 LLPTTSANISGE-KTPRAYDELSDTFKERVDIIVDGGKSPLGTESTIIDMT--DKPKILR 196

Query: 194 PGGLEIETLKRAIS 207
            G + IE +++ I 
Sbjct: 197 LGAISIEDIEKVIG 210


>gi|253751630|ref|YP_003024771.1| hypothetical protein SSUSC84_0755 [Streptococcus suis SC84]
 gi|253753532|ref|YP_003026673.1| hypothetical protein SSU0792 [Streptococcus suis P1/7]
 gi|253755643|ref|YP_003028783.1| hypothetical protein SSUBM407_1043 [Streptococcus suis BM407]
 gi|251815919|emb|CAZ51533.1| conserved hypothetical protein [Streptococcus suis SC84]
 gi|251818107|emb|CAZ55901.1| conserved hypothetical protein [Streptococcus suis BM407]
 gi|251819778|emb|CAR45685.1| conserved hypothetical protein [Streptococcus suis P1/7]
          Length = 200

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 15/201 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + N  A+ R+Y++K+RP   AMN  + +++DI    ++  
Sbjct: 8   LENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIYFFSQNT- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
             P  L  L   F PGPLT++L   +  ++     + L T  FR+P    T +LI   G 
Sbjct: 67  --PFFLEKLYNRFMPGPLTIILK--ANDNVPFWVNSGLDTVGFRLPNHEQTLRLISETG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SG  S      I  +    ++P I D   +  G++STI+++  + K RILR
Sbjct: 122 PLIGPSANISGNESGKKFSDI-QAQFSVDLPGIEDDQ-ALTGIDSTILDLSGQ-KARILR 178

Query: 194 PGGLEIETLKRAISVELEYCV 214
            G +  E +++AI  E+E+ V
Sbjct: 179 QGAISREEIQKAIP-EIEFEV 198


>gi|159901360|ref|YP_001547607.1| Sua5/YciO/YrdC/YwlC family protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894399|gb|ABX07479.1| Sua5/YciO/YrdC/YwlC family protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 207

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 6/173 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           +  PT+TVYG+   + +  AI ++++ K RPA   L   ++D+  + K A   P L+  L
Sbjct: 26  LCFPTDTVYGIGGSALDEAAIAQVFQAKARPATVALPMLLADLDDLSKVARDIPDLAWRL 85

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
           A+ +WPG LTLVL   +   +  L TA   T   RVP  G  + LI  +G P+A  SAN 
Sbjct: 86  AEAWWPGGLTLVLP--AVAQLPQLLTAGKATIAVRVPNHGQLRNLIRQFGTPIAGTSANL 143

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            G+ +  N    ++  +   +PL++DGG +     STIV++  E+   ILR G
Sbjct: 144 HGK-ATPNTAQAVAEQLAGRVPLVLDGGFAMGEQPSTIVDLSGEQPT-ILRQG 194


>gi|332360648|gb|EGJ38457.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK49]
          Length = 196

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ I  +   +   P
Sbjct: 8   LVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  SYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +E    ++   +  G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIMMD--FQEQVSGVEDDTALTGQDSTILDLSGEKAL-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|253581898|ref|ZP_04859122.1| SUA5 protein [Fusobacterium varium ATCC 27725]
 gi|251836247|gb|EES64784.1| SUA5 protein [Fusobacterium varium ATCC 27725]
          Length = 216

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 11/213 (5%)

Query: 1   MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M  +  T  NA   K  + L  G  I  PT+TVYG+     +  +I ++Y+ K+R   +P
Sbjct: 1   MDRIKYTSLNADYNKIGKLLKEGNLIIYPTDTVYGVGGIIESDESIAKIYKAKERSFKSP 60

Query: 60  LICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           LI  VSD+S ++K A ++  +      L K FWPG LT++L+     ++  +  +  KT 
Sbjct: 61  LIVLVSDVSKIEKIAYIEEKNREKIEKLIKEFWPGGLTIILN--KKDNVPDIMVSGGKTV 118

Query: 116 CFRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P   T  K+IE  G  L   SAN SG+ +  +    LS    + + +++DGG   I
Sbjct: 119 GVRMPNLDTALKIIEAAGGLLPTTSANISGETTPRSYDE-LSEEFKERVEILVDGGRCPI 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           G  STI+++    K +ILR G + IE +++ I 
Sbjct: 178 GNASTIIDMS--DKPKILRTGAISIEDIEKIIG 208


>gi|325696483|gb|EGD38373.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK160]
          Length = 196

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 98/186 (52%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V  +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVGSLEEIYDFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  CYLDQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPNHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+     +E    ++   +  G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIMMD--FQEQVSGVEDDAALTGQDSTILDLSGEKAL-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|297793617|ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310528|gb|EFH40952.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 284

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 105/201 (52%), Gaps = 9/201 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 77  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVLDIKR 136

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A+ + L   L     PGP+T+VL    ++ +       + T   RVP C F +++    
Sbjct: 137 VATTNHLPHGLLDSLLPGPVTIVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVR 190
           G  LA+ SAN SG  S   VK     ++ +    + DGG+   G   STIV++    K +
Sbjct: 197 GSVLALTSANLSGDRSSVCVKDF--ENLWQHCAYVYDGGLLPSGRAGSTIVDLTKAGKYK 254

Query: 191 ILRPGGLEIETLKRAISVELE 211
           I+RPG     + K+A  V LE
Sbjct: 255 IIRPG-----SAKQATVVILE 270


>gi|302802275|ref|XP_002982893.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii]
 gi|300149483|gb|EFJ16138.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii]
          Length = 201

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 5/196 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I + T  N +R A   L  G  I++PT+T+YGLA D+ +  A+ R+YEIK R A +PL 
Sbjct: 8   KIWAATQEN-VRHAIAALRHGDVISVPTDTLYGLAADACSRVALERIYEIKGRNAGSPLA 66

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             V+D+  +K++A +D L   L     PGP+TLVL+    +++       L +   R+P 
Sbjct: 67  VCVADVPDLKRYARIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPD 126

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLEST 179
             F + +   +   LA+ SAN S + S   V+      +  +   + D G +S     ST
Sbjct: 127 SDFIRSVARAFDGALALTSANTSSKPSSICVEEF--EHLWPQCAAVFDAGELSAGRAGST 184

Query: 180 IVNVQCEKKVRILRPG 195
           IV++  E   ++LR G
Sbjct: 185 IVDLTAEASFKVLRAG 200


>gi|324992931|gb|EGC24851.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK405]
 gi|325687439|gb|EGD29460.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK72]
 gi|327462227|gb|EGF08554.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1]
 gi|327489582|gb|EGF21374.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1058]
          Length = 196

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 10/194 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLI 128
             +   P  L  L + F PGPLT++   L   D  P+   + ++T  FR+P    T  LI
Sbjct: 61  AFSKNPPSYLDQLYQAFLPGPLTII---LQANDQVPVWINSGMETVGFRIPKHPVTLDLI 117

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             YG PL  PSAN SG+ S T+ + I+     +E    ++   +  G +STI+++  E K
Sbjct: 118 RKYG-PLIGPSANLSGKASGTSFQQIMMD--FQEQVSGVEDDPALTGQDSTILDLSGE-K 173

Query: 189 VRILRPGGLEIETL 202
            RILR G +  E +
Sbjct: 174 ARILRQGAITREDI 187


>gi|302023745|ref|ZP_07248956.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 05HAS68]
 gi|330832778|ref|YP_004401603.1| putative translation factor (SUA5) [Streptococcus suis ST3]
 gi|329307001|gb|AEB81417.1| putative translation factor (SUA5) [Streptococcus suis ST3]
          Length = 202

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 15/201 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + N  A+ R+Y++K+RP   AMN  + +++DI    ++  
Sbjct: 10  LENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIYFFSQNT- 68

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
             P  L  L   F PGPLT++L   +  ++     + L T  FR+P    T +LI   G 
Sbjct: 69  --PFFLEKLYNRFMPGPLTIILK--ANENVPFWVNSGLDTVGFRLPNHEQTLRLISETG- 123

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SG  S      I  +    ++P I D   +  G++STI+++  + K RILR
Sbjct: 124 PLIGPSANISGNESGKKFSDI-QAQFSVDLPGIEDDQ-ALTGIDSTILDLSGQ-KARILR 180

Query: 194 PGGLEIETLKRAISVELEYCV 214
            G +  E +++AI  E+E+ V
Sbjct: 181 QGAISREEIQKAIP-EIEFEV 200


>gi|114050899|ref|NP_001040163.1| ischemia/reperfusion inducible protein [Bombyx mori]
 gi|87248253|gb|ABD36179.1| ischemia/reperfusion inducible protein [Bombyx mori]
          Length = 274

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 100/199 (50%), Gaps = 9/199 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++S  D  A  +A E L  G  IA+PT+T+YGLA  +  P AI++LY IK R A+ P+  
Sbjct: 46  VISCVDFTASLRAAECLAKGQVIAVPTDTIYGLACSANCPLAIKKLYSIKGREAVKPVAI 105

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V+ ++ ++K      +S  L     PGP+T+VL      D +P    +      R+P  
Sbjct: 106 CVTSVADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLD-NPFLNPSTTKIGIRIPKH 164

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177
            F   + + +  P+A+ SAN S + S  ++K      +   +  I DGG+   GLE    
Sbjct: 165 DFMNTVTKIFDMPVALTSANFSNEPSTLSIKEF--EHLYPHLAAIFDGGLLSQGLEQNRT 222

Query: 178 -STIVNVQCEKKVRILRPG 195
            ST++++      +I+R G
Sbjct: 223 GSTVIDLSKNGLYKIIRKG 241


>gi|223932124|ref|ZP_03624128.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 89/1591]
 gi|223899105|gb|EEF65462.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 89/1591]
          Length = 200

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 15/201 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + N  A+ R+Y++K+RP   AMN  + +++DI    ++  
Sbjct: 8   LENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIYFFSQNT- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
             P  L  L   F PGPLT++L   +  ++     + L T  FR+P    T +LI   G 
Sbjct: 67  --PFFLEKLYNRFMPGPLTIILK--ANENVPFWVNSGLDTVGFRLPNHEQTLRLISETG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SG  S      I  +    ++P I D   +  G++STI+++  + K RILR
Sbjct: 122 PLIGPSANISGNESGKKFSDI-QAQFSVDLPGIEDDQ-ALTGIDSTILDLSGQ-KARILR 178

Query: 194 PGGLEIETLKRAISVELEYCV 214
            G +  E +++AI  E+E+ V
Sbjct: 179 QGAISREEIQKAIP-EIEFEV 198


>gi|299137093|ref|ZP_07030276.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8]
 gi|298601608|gb|EFI57763.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8]
          Length = 243

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 6/203 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S  + +  + L++G  +A+PT+T YGLAVD  N  A+ R+Y++K R    PL   ++D+
Sbjct: 43  ESAHIDRVVQHLNSGEVVALPTDTFYGLAVDPVNLRAVDRIYDLKSRARHKPLSLLIADV 102

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +   + A  +D     LA+ FWPGPLT+++   S   +    TAN      RVP     +
Sbjct: 103 AQAYELARGIDTAFDRLAERFWPGPLTIIVKAGSKLPLR--VTANTGNVALRVPEAPICR 160

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ- 184
            ++   G P+   SAN  G +   +    +      +IPLI+DGG +   + +TIV++  
Sbjct: 161 AVVAKLGLPITATSANLRG-LPECSYAGCVRDQFGDKIPLIVDGGPTSRSMATTIVDLSG 219

Query: 185 CEKKVRILRPGGLEIETLKRAIS 207
                 ILR G +    +  A+ 
Sbjct: 220 GGNSWMILREGAIPTHEIALALQ 242


>gi|195486789|ref|XP_002091655.1| GE13782 [Drosophila yakuba]
 gi|194177756|gb|EDW91367.1| GE13782 [Drosophila yakuba]
          Length = 251

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 23/222 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D  AL+ A + L +G  IA+PT+TVYGLA D+ N TAI+RLYEIK R    P+   V 
Sbjct: 38  VGDEAALQLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAICVH 97

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVP-C 121
           +I+ +++      LS  L     PGPLT+V++    LS   ++P ST+ +     R+P  
Sbjct: 98  NIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLNP-STSKIG---IRIPDF 153

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----- 175
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G  +IG     
Sbjct: 154 NFIRDLCAVWHEQPLALTSANRSSAPSSLQVVEF--RSLWPQLGAVFDAG--QIGLTEER 209

Query: 176 -LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
            L ST++++       I+R G      LK  +S+  E+ + E
Sbjct: 210 RLASTVIDLATPSYFEIVRAG----VALKPTLSLMEEFGIRE 247


>gi|320106655|ref|YP_004182245.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
 gi|319925176|gb|ADV82251.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
          Length = 214

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 6/192 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           L++G+  AIPT+T YGLAVD  N  A+ ++YE+K R    PL   ++D +   + A  VD
Sbjct: 25  LESGMVAAIPTDTFYGLAVDPVNLRAVEQIYELKGRAKHKPLSLLIADTAHAYELARDVD 84

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
                LA+ FWPGPLT+++   S   +    TA+      RVP     + +++  G P+ 
Sbjct: 85  TAFDKLAEKFWPGPLTIIVKAGSRLPLR--VTAHTGNVALRVPEAAIPRAIVKKLGLPIT 142

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ-CEKKVRILRPG 195
             SAN  G +   N    +   +  +IPLI+DGG +   + +TIV++        ILR G
Sbjct: 143 ATSANLRG-LPECNYAACVRDQLGGQIPLIVDGGPTARSIATTIVDLSGGGNSWMILREG 201

Query: 196 GLEIETLKRAIS 207
            +    +  A+ 
Sbjct: 202 AIPTHEIALALQ 213


>gi|195029409|ref|XP_001987565.1| GH19895 [Drosophila grimshawi]
 gi|193903565|gb|EDW02432.1| GH19895 [Drosophila grimshawi]
          Length = 250

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 23/221 (10%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++   NAL+ A + L  G  IA+PT+TVYGLA D+ N  AI+RLYEIK R A  P+  
Sbjct: 31  VYAVDALNALKLAEQCLQLGKVIALPTDTVYGLACDANNEEAIQRLYEIKGRDAHKPVAI 90

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRV 119
            V+ I  ++++     LS  L     PGPLT+V++    LS   ++P +T        R+
Sbjct: 91  CVNTIGALRRYGQASHLSDELLTRLLPGPLTIVIERTPQLSNRFLNPSTT----RIGIRI 146

Query: 120 P-CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           P   F + L  T+   PLA+ SANRS   S  ++      ++  ++  + D G  +IGL 
Sbjct: 147 PDFKFMRDLCGTWHEQPLALTSANRSSAPSSLHISEF--QALWPQLGAVFDAG--RIGLS 202

Query: 178 ------STIVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212
                 ST++++       I+R G      LK+ ++V  E+
Sbjct: 203 EERRLASTVIDLVTPGCYDIVRSG----VALKQTLAVLHEF 239


>gi|302818656|ref|XP_002991001.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii]
 gi|300141332|gb|EFJ08045.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii]
          Length = 201

 Score = 87.4 bits (215), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 5/196 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++++ T  N +R A   L  G  I++PT+T+YGLA D+ +  A+ R+Y+IK R A +PL 
Sbjct: 8   KVLAATQEN-VRHAIAALRRGDVISVPTDTLYGLAADACSRVAVERIYDIKGRNAGSPLA 66

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             V+D+  +K++A +D L   L     PGP+TLVL+    +++       L +   R+P 
Sbjct: 67  VCVADVPDLKRYARIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPD 126

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLEST 179
             F + +   +   LA+ SAN S + S   V+      +  +   + D G +S     ST
Sbjct: 127 SDFIRSVARAFDGALALTSANTSSRPSSICVEEF--EHLWPQCAAVFDAGELSAGRAGST 184

Query: 180 IVNVQCEKKVRILRPG 195
           IV++  E   ++LR G
Sbjct: 185 IVDLTAEASFKVLRAG 200


>gi|327460376|gb|EGF06713.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1057]
          Length = 196

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +++ +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNMASLEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  TYLKQLYQAFLPGPLTIILH--ANDRVPTWINSGMETVGFRIPNHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T+ + I+      EI  + D   +  G +STI+++  EK + ILR G 
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQGEISGVEDDA-TLTGQDSTILDLSGEKAI-ILRQGA 181

Query: 197 LEIETL 202
           +  E +
Sbjct: 182 ITREDI 187


>gi|332366921|gb|EGJ44662.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1059]
          Length = 196

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 10/187 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNPP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPL 135
             L  L + F PGPLT++   L   D  P+   + ++T  FR+P    T  LI  YG PL
Sbjct: 68  SYLDQLYQAFLPGPLTII---LQANDQVPVWINSGMETVGFRIPKHPVTLDLIRKYG-PL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  EK + ILR G
Sbjct: 124 IGPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDA-ALTGQDSTILDLSGEKAL-ILRQG 180

Query: 196 GLEIETL 202
            +  E +
Sbjct: 181 AITREDI 187


>gi|195119554|ref|XP_002004296.1| GI19851 [Drosophila mojavensis]
 gi|193909364|gb|EDW08231.1| GI19851 [Drosophila mojavensis]
          Length = 228

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 23/221 (10%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I S    NAL+ A + L  G  IA+PT+TVYGLA D+ N  AI+RLYEIK R    P+  
Sbjct: 11  ICSAESLNALKLAEQCLQLGKVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 70

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRV 119
            V++I+ ++++     LS  L     PGPLT++++    LS   ++P ST+ +     R+
Sbjct: 71  CVNNITALRRYGQASHLSDELLTRLLPGPLTIIVEHTPHLSNRYLNP-STSKIG---IRI 126

Query: 120 P-CGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-- 175
           P   F + L   +   PLA+ SANRS + S  +++ I   ++  ++  I D G  +IG  
Sbjct: 127 PDFQFIRDLCARWHEQPLALTSANRSSEPS--SLEIIEFQALWPQLGAIFDAG--RIGQT 182

Query: 176 ----LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212
               L ST++++       I+R G      LK+ +SV  E+
Sbjct: 183 EERRLASTVIDLANPGCYEIVRAG----VALKQTLSVLHEF 219


>gi|124805452|ref|XP_001350444.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23496566|gb|AAN36124.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 556

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 14/188 (7%)

Query: 5   SITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            I ++  LRK   E ++    I IPTETVYGL  +S +  +++ ++ +K RP  +P+I H
Sbjct: 9   EIFENEDLRKKLKEHIEGDKLIGIPTETVYGLGGNSLSQRSLQNIFRMKNRPVSDPIISH 68

Query: 64  VSDISMVKKHASVDPLSLH-------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           V +I   + +  +  ++++       L+K FWPGPL+++    +  +   + TA  +   
Sbjct: 69  VYNI--YQAYDQLYHINIYEKYIIYILSKYFWPGPLSIIAK--AKKEAPLILTAYTQFCA 124

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P    T+++I+    P+A PSAN+   IS TN  H+       E  LI D G   +G
Sbjct: 125 VRIPDNKITREIIKICNTPIAAPSANKFQHISPTNSLHVY-DEFKNEDLLIFDDGQCDVG 183

Query: 176 LESTIVNV 183
           +EST++ +
Sbjct: 184 IESTVLKI 191


>gi|69249629|ref|ZP_00605027.1| SUA5 [Enterococcus faecium DO]
 gi|68194108|gb|EAN08648.1| SUA5 [Enterococcus faecium DO]
          Length = 235

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 114/230 (49%), Gaps = 20/230 (8%)

Query: 109 TANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           T  L TA FR+P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  II
Sbjct: 2   TGGLSTAAFRIPDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGII 60

Query: 168 DGGISKIGLESTIVNVQCEKKV-RILRPGGLEIETLKRAISVEL---EYCVDETSTPQSP 223
           D G ++IG+EST++++     +  ILRPG +  E ++  I   +   ++ V E  TP++P
Sbjct: 61  DDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAP 120

Query: 224 GMLKSHYAPRSQVRL-------RAIHVNPREALIRFGNVPIKNIENAI----ISLNLSKT 272
           GM   HY+P ++V +        A+    +   IR G +    I + +     ++ +   
Sbjct: 121 GMKYKHYSPDTRVLMVRDGDWSTAVQW-AKNKKIRAGVIASPEIADQVRTDTAAVYMYND 179

Query: 273 GKLKEAAFNLFNYMKIADDS--GASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++ AA  LF  ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 180 NSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 229


>gi|300709454|ref|YP_003735268.1| Sua5/YciO/YrdC/YwlC family protein [Halalkalicoccus jeotgali B3]
 gi|299123137|gb|ADJ13476.1| Sua5/YciO/YrdC/YwlC family protein [Halalkalicoccus jeotgali B3]
          Length = 192

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 11/192 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   + AG  +  PTETVYGL  D+ +P A+ R+YE K R    PL   V D+    
Sbjct: 3   LDRAVRAIRAGELVVYPTETVYGLGADALDPAAVERVYEAKGRARSKPLSMAVPDVEAAA 62

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           +H S+        + F PGP+T+V  + +  ++    TA       R+P       L+E 
Sbjct: 63  RHTSLTDHERAFMREFLPGPVTVV--VAAGPEVPEALTAGRDRVGIRIPDQDLALSLLEE 120

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SGQ S   V   L + + +    ++DGG +  G EST+V+V+   + R
Sbjct: 121 VA-PITATSANASGQSSARRVAD-LDAGVRRAAACVLDGGETG-GTESTVVDVE---RGR 174

Query: 191 ILRPGGL--EIE 200
           + R G L  EIE
Sbjct: 175 LHRRGALAEEIE 186


>gi|42573748|ref|NP_974970.1| yrdC protein-related [Arabidopsis thaliana]
 gi|332009969|gb|AED97352.1| DHBP synthase RibB-like alpha/beta domain-containing protein
           [Arabidopsis thaliana]
          Length = 288

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 4/192 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 77  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A+   L   L     PGP+TLVL    ++ +       + T   RVP C F +++    
Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVR 190
           G  LA+ SAN SG  S   VK     ++ +    + DGG+   G   STIV++    K +
Sbjct: 197 GSVLALTSANLSGDRSSVCVKDF--ENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYK 254

Query: 191 ILRPGGLEIETL 202
           I+RPG  +  T+
Sbjct: 255 IIRPGSAKQATV 266


>gi|288869983|ref|ZP_06112469.2| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM
           13479]
 gi|288868885|gb|EFD01184.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM
           13479]
          Length = 162

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA   L  G  +A PTETVYGL  ++ +  A +++Y  K RP+ NPLI H++D 
Sbjct: 28  DLKKLEKAAAILREGGLVAFPTETVYGLGANALDEEAAKKIYAAKGRPSDNPLIAHIADF 87

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FT 124
           S +K   A +   +  L + FWPGPLT++      +D  P  +T  L T   R+P     
Sbjct: 88  SDLKPLVAEIPETAKKLMEAFWPGPLTMI---FPKSDAVPYGTTGGLDTVAVRMPSDPVA 144

Query: 125 KKLIETYGHPLAIPSAN 141
             LI   G P+A PSAN
Sbjct: 145 MTLIRLSGVPVAAPSAN 161


>gi|326487440|dbj|BAJ89704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 274

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL   V+D+  + + 
Sbjct: 74  KAIDAINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIHTRPLAICVADVPEISRF 133

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A VD L   L     PGP+T+VL     + +       L +   RVP   F + +    G
Sbjct: 134 AMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPKLDFIRSIARGAG 193

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191
             LA+ SAN SG+ S   VK      +      + DGG+   G   STIV++      +I
Sbjct: 194 SALALTSANLSGRPSSVGVKDF--GDLWPHCSYVFDGGMLPSGRAGSTIVDLITPGVYKI 251

Query: 192 LRPGGLEIET 201
           LR G    ET
Sbjct: 252 LRDGSSREET 261


>gi|67623713|ref|XP_668139.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54659320|gb|EAL37902.1| hypothetical protein Chro.10272 [Cryptosporidium hominis]
          Length = 389

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 123/268 (45%), Gaps = 56/268 (20%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    +++  G  +AIPTETVYGL  ++ + ++I ++++IK RP  NPLICHV     
Sbjct: 2   NNLSDYAKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKF 61

Query: 70  VKKHASVDPLSLH-------LAKLFWPGPLTL-------VLDLLSTTDIHPLSTANLKTA 115
            + +  V  LS         L   FWPGPLT+       ++D +S +    +   N +  
Sbjct: 62  AEDN--VFELSERTRVIYKILTDKFWPGPLTVISKKRRNIVDEVSVSGKVGVRCPNNQ-- 117

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPL---IIDG 169
                   T  L++    P+A PSANRSG IS T+  H+      S   E+ +   I+DG
Sbjct: 118 -------LTLDLLKLSSVPIAAPSANRSGHISPTSPLHVSKEFDQSYMNEVGIKVWILDG 170

Query: 170 G-ISKIGLESTIVNVQCEKK-VRILRPGGLE----IETL-------KRAISVELEYCVDE 216
           G    +G+EST++    +   + I R G +      ETL       +    +++ Y    
Sbjct: 171 GECCSVGVESTVLEYYEDGNFISIFRCGKVTKNQIWETLIDNCRNNEWIKDIKISYFGSN 230

Query: 217 TSTPQ------------SPGMLKSHYAP 232
            S+P             SPGM   HY+P
Sbjct: 231 NSSPNRNYLSLHDTVAISPGMDIKHYSP 258


>gi|9759323|dbj|BAB09832.1| unnamed protein product [Arabidopsis thaliana]
          Length = 239

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 97/185 (52%), Gaps = 4/185 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 28  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 87

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A+   L   L     PGP+TLVL    ++ +       + T   RVP C F +++    
Sbjct: 88  VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 147

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVR 190
           G  LA+ SAN SG  S   VK     ++ +    + DGG+   G   STIV++    K +
Sbjct: 148 GSVLALTSANLSGDRSSVCVKDF--ENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYK 205

Query: 191 ILRPG 195
           I+RPG
Sbjct: 206 IIRPG 210


>gi|170061182|ref|XP_001866124.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus]
 gi|167879525|gb|EDS42908.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus]
          Length = 242

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 12/220 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            ++ I   +A+ +A   L++G  I +PT+TVYGLA  + +P AI++LY+IK R    P+ 
Sbjct: 25  HVIDIKSPDAILQAANLLESGKVIGLPTDTVYGLACSANDPAAIKKLYDIKGRICTKPIA 84

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             V ++  V      D L + L +   PG +T+V+      D +P     ++    RVP 
Sbjct: 85  ICVPEVKDVLYWGKADHLPMGLLQELLPGAVTIVVKKSHYLD-NPFLNPGVEKIGIRVPK 143

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--- 177
             F + + + +  P+A+ SAN S Q S   +      ++  E+  + DGG      E   
Sbjct: 144 FNFIRNVTKQFKAPMALTSANFSSQKSTLEITEF--KALWPELGAVFDGGQLGQSEEQRA 201

Query: 178 -STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
            ST++++   +K  I+R G      +KR I +   Y  +E
Sbjct: 202 ASTVIDLSEPRKFEIIRTG----VAIKRTIELLKRYRFEE 237


>gi|326521554|dbj|BAK00353.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 214

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 4/190 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL   V+D+  + + 
Sbjct: 14  KAIDAINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIHTRPLAICVADVPEISRF 73

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A VD L   L     PGP+T+VL     + +       L +   RVP   F + +    G
Sbjct: 74  AMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPKLDFIRSIARGAG 133

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRI 191
             LA+ SAN SG+ S   VK      +      + DGG+   G   STIV++      +I
Sbjct: 134 SALALTSANLSGRPSSVGVKDF--GDLWPHCSYVFDGGMLPSGRAGSTIVDLITPGVYKI 191

Query: 192 LRPGGLEIET 201
           LR G    ET
Sbjct: 192 LRDGSSREET 201


>gi|327474247|gb|EGF19654.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK408]
          Length = 196

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 100/187 (53%), Gaps = 10/187 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  +   +   P
Sbjct: 8   LAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPL 135
             L  L + F PGPLT++   L   D  P+   + ++T  FR+P    T  LI  YG PL
Sbjct: 68  SYLEQLYQAFLPGPLTII---LQANDRVPVWINSGMETVGFRIPKHPVTLDLIRKYG-PL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SG+ S T+ + I+     +E    ++   +  G +STI+++  EK + ILR G
Sbjct: 124 IGPSANLSGKASGTSFQQIMMD--FQEEVSGVEEDAALTGKDSTILDLSGEKAL-ILRQG 180

Query: 196 GLEIETL 202
            +  E +
Sbjct: 181 AITREDI 187


>gi|308799281|ref|XP_003074421.1| yrdC protein-related (ISS) [Ostreococcus tauri]
 gi|116000592|emb|CAL50272.1| yrdC protein-related (ISS) [Ostreococcus tauri]
          Length = 239

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 98/192 (51%), Gaps = 9/192 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A   L  G  IA+PT+T+YG A  + +  A+RRLYEIK R A   +   V D+  
Sbjct: 31  DAVALAVGALRRGGVIAVPTDTIYGFAARAEDGAAVRRLYEIKGRKATVAVAIAVGDVGD 90

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKK 126
           + ++     L   L     PGP+T++L   ++ +    S  N  +     RVP   F ++
Sbjct: 91  IGRYGECSHLREGLLGRILPGPVTVLLRRRASEEGGASSELNPGVDLIGIRVPASDFVRE 150

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILS-SSICKEIPLIIDGGISKIG-LESTIVNV- 183
           +   +G  +A+ SANRSG+ S T+V+        C E   + DGG+ +   L STIV++ 
Sbjct: 151 VCRAHGSAIALTSANRSGETSTTSVEEFAELWDACAE---VFDGGVIETKRLGSTIVDLS 207

Query: 184 QCEKKVRILRPG 195
             + +  ++R G
Sbjct: 208 STDGRYGVVREG 219


>gi|328946332|gb|EGG40476.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1087]
          Length = 196

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 96/179 (53%), Gaps = 8/179 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG    +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  +   +   P
Sbjct: 8   LAAGGAAVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIYAFSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI  YG PL 
Sbjct: 68  CYLEQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIRKYG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            PSAN SG+ S T+ + I+     +E+  I D   +  G +STI+++  EK + ILR G
Sbjct: 125 GPSANLSGKASGTSFQQIM-MDFQEEVSGIEDDA-ALTGQDSTILDLSGEKAL-ILRQG 180


>gi|323351593|ref|ZP_08087247.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis VMC66]
 gi|322122079|gb|EFX93805.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis VMC66]
          Length = 196

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L A   + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKILAASGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKKQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIM-MDFQEEVSGVEDDA-TLTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|225708092|gb|ACO09892.1| Hypothetical protein ywlC [Osmerus mordax]
          Length = 268

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 16/191 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    + L  G  +A+PT+T+YGLA  ++N  AI+R+YEIK R    PL   V +I  + 
Sbjct: 64  LDATVQSLKEGQVVALPTDTIYGLACLAQNSDAIKRVYEIKGRNGQKPLAICVGEIQDIY 123

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD--LLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           K+  V  +   L K   PGP+TLVL    +  TD++P +         R+P   F ++L 
Sbjct: 124 KYCKVS-VKEELLKELLPGPVTLVLQRSTVLNTDLNPFT----PLVGVRIPNHPFMRRLC 178

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LESTIVNVQ 184
           +    PLA+ SAN S   S   V       +   + +++DGG   IG    L ST++++ 
Sbjct: 179 QLCAEPLALTSANISTHSSTVAVHEF--QDLWPRLAVVVDGG--PIGDHSRLGSTVIDLS 234

Query: 185 CEKKVRILRPG 195
              K RI+RPG
Sbjct: 235 VFGKYRIIRPG 245


>gi|66362214|ref|XP_628071.1| SUA5 like RNA binding domain containing protein [Cryptosporidium
           parvum Iowa II]
 gi|46227629|gb|EAK88564.1| SUA5 like RNA binding domain containing protein [Cryptosporidium
           parvum Iowa II]
          Length = 390

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 118/262 (45%), Gaps = 48/262 (18%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    +++  G  +AIPTETVYGL  ++ + ++I ++++IK RP  NPLICHV      +
Sbjct: 5   LSDYAKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAE 64

Query: 72  KHASVDPLSLH-------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC--- 121
              +V  LS         L   FWPGPLT++     +   H +      +    V C   
Sbjct: 65  D--NVFELSERTRVIYKILTDKFWPGPLTVI-----SKKRHNIVDEVSVSGKVGVRCPNN 117

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPL---IIDGG-ISKI 174
             T  L++    P+A PSANRSG IS T   H+      S   E+ +   I+DGG    +
Sbjct: 118 QLTLDLLKLSSVPIAAPSANRSGHISPTTPLHVSKEFDQSYMNEVGIKVWILDGGECCSV 177

Query: 175 GLESTIVNVQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTPQ- 221
           G+EST++    +   + I R G +  + +   +            +++ Y     S+P  
Sbjct: 178 GVESTVLEYYEDGNFISIFRCGKVTKKQIWETLIDNCRNNEWIKEIKISYFGSNNSSPNR 237

Query: 222 -----------SPGMLKSHYAP 232
                      SPGM   HY+P
Sbjct: 238 NYLSLHDTVAISPGMDIKHYSP 259


>gi|323508601|dbj|BAJ77194.1| cgd1_2420 [Cryptosporidium parvum]
 gi|323510581|dbj|BAJ78184.1| cgd1_2420 [Cryptosporidium parvum]
          Length = 389

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 118/262 (45%), Gaps = 48/262 (18%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    +++  G  +AIPTETVYGL  ++ + ++I ++++IK RP  NPLICHV      +
Sbjct: 4   LSDYAKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAE 63

Query: 72  KHASVDPLSLH-------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC--- 121
              +V  LS         L   FWPGPLT++     +   H +      +    V C   
Sbjct: 64  D--NVFELSERTRVIYKILTDKFWPGPLTVI-----SKKRHNIVDEVSVSGKVGVRCPNN 116

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPL---IIDGG-ISKI 174
             T  L++    P+A PSANRSG IS T   H+      S   E+ +   I+DGG    +
Sbjct: 117 QLTLDLLKLSSVPIAAPSANRSGHISPTTPLHVSKEFDQSYMNEVGIKVWILDGGECCSV 176

Query: 175 GLESTIVNVQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTPQ- 221
           G+EST++    +   + I R G +  + +   +            +++ Y     S+P  
Sbjct: 177 GVESTVLEYYEDGNFISIFRCGKVTKKQIWETLIDNCRNNEWIKEIKISYFGSNNSSPNR 236

Query: 222 -----------SPGMLKSHYAP 232
                      SPGM   HY+P
Sbjct: 237 NYLSLHDTVAISPGMDIKHYSP 258


>gi|195401705|ref|XP_002059453.1| GJ18829 [Drosophila virilis]
 gi|194142459|gb|EDW58865.1| GJ18829 [Drosophila virilis]
          Length = 259

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 21/228 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++   +AL+ A + L  G  I +PT+TVYGLA D+ N  AI+RLYEIK R    P+  
Sbjct: 41  VCAVASLDALKLAEQCLHLGQVIGLPTDTVYGLACDANNEEAIQRLYEIKGRDEHKPVAI 100

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRV 119
            V++I+ ++++     LS  L     PGPLT++++    LS   ++P +T        R+
Sbjct: 101 CVNNIAALRRYGQASHLSDELLTRLLPGPLTIIVERSPQLSNRFLNPSTTK----IGIRI 156

Query: 120 P-CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-- 175
           P   F + L  T+   PLA+ SANRS   S   V      S+  ++  + D G  +IG  
Sbjct: 157 PDYKFMRDLCATWHEQPLALTSANRSSAPSSLQVSEF--QSLWPQLGAVFDAG--RIGQT 212

Query: 176 ----LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219
               L ST++++       I+R G    +TL  A+  E  Y   +  T
Sbjct: 213 EERRLASTVIDLAKPGSYSIVRAGVALKQTL--AVLHEFGYVKQDLDT 258


>gi|255071095|ref|XP_002507629.1| predicted protein [Micromonas sp. RCC299]
 gi|226522904|gb|ACO68887.1| predicted protein [Micromonas sp. RCC299]
          Length = 289

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 4/181 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA+PT+T+YGLA  + +  +IRRLY  K+R    P+   VSD   V+++A    L+  L 
Sbjct: 99  IAVPTDTLYGLAAGAHSDKSIRRLYAAKRRSETVPIAICVSDAKDVERYADTKHLAEGLL 158

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
               PGP+T++L   S+ D+      N +    R+P   F + +   YGH LA+ SAN+S
Sbjct: 159 DELLPGPVTVLLSQKSSADLPSSLNPNSRLMGIRIPKSDFIRAVARQYGHALALTSANQS 218

Query: 144 GQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           G  S  ++     + +  +   + DGG I    + S+IV++       + R G    +T 
Sbjct: 219 GSASTLDLNEF--TELWDDCAFVFDGGRIVSGRVGSSIVDLSLPGTFSVQRRGDKYEDTR 276

Query: 203 K 203
           K
Sbjct: 277 K 277


>gi|158521439|ref|YP_001529309.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3]
 gi|158510265|gb|ABW67232.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3]
          Length = 225

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 6/200 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  + +AC  L+AG  +  PT T+YGLA D+ N +A+ ++ +IK RP   P++  + D 
Sbjct: 25  DSALIDRACGLLNAGGVLVFPTVTLYGLAADAWNRSAVEKVRQIKGRPDDKPILILIPDA 84

Query: 68  SMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +      +  P     L   FWPG +TLV +  +    H +S +   T   RVP      
Sbjct: 85  AAAAGLVTTVPAGAEQLMDRFWPGNVTLVFEASARVPSHLISPSG--TIGLRVPSHPVAH 142

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+   G P+   SANRSG  +   V   L   I +   +++D G+   G+ ST+V+V  
Sbjct: 143 ALVVRLGRPVTGTSANRSGSPACGRVAD-LDVDIVRLADMVLDAGVLGGGVGSTVVDVTM 201

Query: 186 EKKVRILRPGGLEIETLKRA 205
               ++LR G +    + +A
Sbjct: 202 NPP-KVLREGTVRAADILKA 220


>gi|253574245|ref|ZP_04851587.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846722|gb|EES74728.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 174

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPL 79
           +G  +A PTETVYGL  D+RN  A+  ++  K RP+ NPLI H++D+S +    + V+  
Sbjct: 65  SGGTVAFPTETVYGLGADARNTAAVEAIFAAKGRPSDNPLIVHIADVSQLDGLVTEVNET 124

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           +  L + FWPGPLTLVL  +S   + P  TA L T   R+P 
Sbjct: 125 ARRLMEAFWPGPLTLVLP-VSEGAVSPRVTAGLSTVGVRMPA 165


>gi|147669398|ref|YP_001214216.1| translation factor SUA5 [Dehalococcoides sp. BAV1]
 gi|146270346|gb|ABQ17338.1| translation factor SUA5 [Dehalococcoides sp. BAV1]
          Length = 213

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 9/198 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  +  PT+TVY +   +RN  A+ R+++IK R     L   + DIS + 
Sbjct: 14  INRAVQVLKNGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDISQIH 73

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVP-CGFTKKLI 128
           + A + P L+  LA  +WPG LTLV   L  TD  PL  T   +T   R+P      +++
Sbjct: 74  QVAKIFPLLARKLAAEYWPGGLTLV---LPKTDNIPLELTGGNETVAIRIPNQAAVIEML 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+   SAN SG  S  N        +   +  I+DGG    G+ESTIV V  + +
Sbjct: 131 KRVAEPVTGTSANLSGCKSSLNASE-AKIQLGDRVDFILDGGQVSGGVESTIVAVNND-E 188

Query: 189 VRILRPGGL-EIETLKRA 205
           ++I+R G + E + LK A
Sbjct: 189 LKIIRQGAIKESDILKTA 206


>gi|291408762|ref|XP_002720685.1| PREDICTED: ischemia/reperfusion inducible protein [Oryctolagus
           cuniculus]
          Length = 280

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 16/196 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 68  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVA 127

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 128 DVYRYCHVR-VPEQLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGVRIPAHAFMQ 182

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LEST 179
            L + +G PLA+ SAN S Q S  NV+      +   + L+IDGG    G      L ST
Sbjct: 183 DLAQMFGGPLALTSANLSSQASSLNVQEF--QDLWPHLSLVIDGGPIGEGQSPECRLGST 240

Query: 180 IVNVQCEKKVRILRPG 195
           +V++    K  I+RPG
Sbjct: 241 VVDLSVPGKFGIIRPG 256


>gi|124486054|ref|YP_001030670.1| translation factor SUA5 [Methanocorpusculum labreanum Z]
 gi|124363595|gb|ABN07403.1| translation factor SUA5 [Methanocorpusculum labreanum Z]
          Length = 198

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 20/196 (10%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+ + + KA   L     +  PTETVYGL  D+ + TA+ ++YE K+RP   P+   VSD
Sbjct: 5   TEESRIEKAVRVLSRDGLVVYPTETVYGLGADALSDTAVIKVYEAKQRPLGKPISVAVSD 64

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPC-GF 123
           I M+   A V P +      F PGP+T+VL + +    D+    +    T   R P    
Sbjct: 65  IEMIYGIADVSPFAERFISKFLPGPVTIVLPVKNCLPGDL----SGGTGTIGIRYPDHTL 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIV 181
             +LI  +  P+   SAN SG+IS  +V  +        +P   ++DGG+   G+ ST+V
Sbjct: 121 ALELISMFDCPITATSANISGEISPVSVDQV-------NVPHDYLLDGGVLP-GIPSTVV 172

Query: 182 NVQCEKKVRILRPGGL 197
           N++      I RPG +
Sbjct: 173 NLETRN---IERPGAM 185


>gi|29840271|ref|NP_829377.1| Sua5/YciO/YrdC family protein [Chlamydophila caviae GPIC]
 gi|29834619|gb|AAP05255.1| Sua5/YciO/YrdC family protein [Chlamydophila caviae GPIC]
          Length = 285

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 26/218 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+A ++L  G  IA PT+TVYGLAV   +P A  ++Y +K R    PL+ +V+ +  ++
Sbjct: 10  LRQAADYLHQGKVIAFPTDTVYGLAVALNSPNAQEKIYSLKHRERGKPLVIYVNTLEDIE 69

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           K +   PLS   + LA+ F PGPLTL++D       H  S  + +   FR+P     ++L
Sbjct: 70  KFSGC-PLSSQAMKLAQEFLPGPLTLLVD-------HRNSRFSQEKLGFRIPSLPVVERL 121

Query: 128 IETYGHPLAIPSANRSGQISITNV-KHILSSSICKEIP---LIIDGGISKIGLESTIVNV 183
           I+  G PL   SAN      I+N    ++S  + ++ P   + I  G    GLEST+++ 
Sbjct: 122 IDLSG-PLLGTSAN------ISNFPPAVVSEEVVEDFPNEDIFIIPGQCSFGLESTVIST 174

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221
                ++I R G +  + ++  +   +E CV + +  Q
Sbjct: 175 ---DPLKIYREGIISRQAIEEIMGETIEPCVTQHAFSQ 209


>gi|156937167|ref|YP_001434963.1| translation factor SUA5 [Ignicoccus hospitalis KIN4/I]
 gi|156566151|gb|ABU81556.1| translation factor SUA5 [Ignicoccus hospitalis KIN4/I]
          Length = 202

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 107/199 (53%), Gaps = 15/199 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL +A E L++G  + IPTETVYG+A  S+   A  ++YE K+RP   PL    + +  
Sbjct: 14  RALIEAKEVLESGGLVIIPTETVYGIA--SKLEFA-EKIYEAKRRPRDKPLPVQ-TPLGR 69

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
            ++    D  +  LAK FWPGPLT+V+   +   +    TA       RVP   F  KL+
Sbjct: 70  HREVGEFDEAAEALAKAFWPGPLTIVVK--AKPWLPEAVTAGTGKVGVRVPAHPFALKLL 127

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G PLA+ SAN SG  S  +     +  +  E  L+ID G  + G  ST+V V+  KK
Sbjct: 128 ELVG-PLAVTSANLSGGKSPKS-----AEEVTVEADLLIDMGPVE-GTPSTVVEVEG-KK 179

Query: 189 VRILRPGGLEIETLKRAIS 207
           V++LR G +  E +++ +S
Sbjct: 180 VKVLRRGPISEEEIQKVLS 198


>gi|156083739|ref|XP_001609353.1| translation factor Sua5 [Babesia bovis T2Bo]
 gi|154796604|gb|EDO05785.1| translation factor Sua5, putative [Babesia bovis]
          Length = 453

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 11/167 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI-----SMVKKHASVDPL 79
           IA+PTETVYGLA +     ++ R++E+K RP  +P+I HV        S+         +
Sbjct: 39  IALPTETVYGLAANGLCEKSVLRIFEVKGRPLTDPVILHVPSFEDALSSIFDADLYTACV 98

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
            L+L+  F PGPLT++      + I  + +AN      R P     + +++  G PLA P
Sbjct: 99  VLYLSLHFSPGPLTIITR--GRSGIPRVVSANSGYPAVRCPNHPDAQAILKHIGFPLAAP 156

Query: 139 SANRSGQISITNVKHILSSSICKEIPL-IIDGGISKIGLESTIVNVQ 184
           SAN+ G IS T   H++S    K++ + ++DGG   +GLEST+  ++
Sbjct: 157 SANKFGHISPTTADHVISE--FKDVHMYVVDGGSCSLGLESTVAKLE 201


>gi|222478840|ref|YP_002565077.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451742|gb|ACM56007.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 199

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 8/177 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ LR+A E +  G  +  PTETVYGL  D+ +PTA+ R++++K R   NPL   V  +
Sbjct: 4   DTDTLRRAAEAVADGDLVVYPTETVYGLGGDALDPTAVERVFDLKGRERSNPLSLGVPSV 63

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTK 125
               ++      ++  A+ F PGP+T+V++     D  P + TA       RVP     +
Sbjct: 64  DAALRYTKPTEFAVAFARAFLPGPVTVVVE---RGDPVPDALTAGSDRVGVRVPDHPIAR 120

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            L+   G PL   SAN SG+ S+T+    L   I + + ++ID G +  G EST+V+
Sbjct: 121 DLLRETG-PLTATSANVSGRGSVTHPDD-LDDRIREGVAVVIDDGETP-GTESTVVD 174


>gi|292654433|ref|YP_003534330.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2]
 gi|291371068|gb|ADE03295.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2]
          Length = 199

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 5/175 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ +++A   +  G  +  PTETVYG+  D+ N  A+ R+++IK R   NPL     D+ 
Sbjct: 2   SDDVQRAAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVD 61

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
              +   VD       + F PGP+T+V++   +  +     A       R+P       L
Sbjct: 62  AALELVEVDDREEAFMRRFLPGPVTVVVERRDS--LPDALVAGKDRIGVRIPDHELALAL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               G P+   SANRSG  SIT+    LS  I + + +++DGG +  G EST+V+
Sbjct: 120 FRASGTPVTATSANRSGTGSITHPSQ-LSDEIREAVAVVLDGGTTP-GTESTVVD 172


>gi|87306381|ref|ZP_01088528.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Blastopirellula marina DSM 3645]
 gi|87290560|gb|EAQ82447.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Blastopirellula marina DSM 3645]
          Length = 380

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 111/247 (44%), Gaps = 21/247 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A + L  G  +A PTETVYG+AV + N  AI RL E K RP   P    +     
Sbjct: 16  DVIHRAVQALAEGQVVAFPTETVYGVAVSALNSGAIDRLMEAKGRPKNQPFALAIRSKDE 75

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLST----ANLKTACFRVPC 121
           +  +     PL   LA   WPGP+TLVL   D  S     P S     A       R+P 
Sbjct: 76  LADYVPQATPLMKRLATRCWPGPVTLVLPCDDPRSVVQSLPASVIPAIAPSGFVGLRIPS 135

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               ++ +     PLA+ SANRSGQ        + + ++   + L++D G  +    ST+
Sbjct: 136 HDLIQEAMRLLPGPLALTSANRSGQPDAVRGSEV-TEALGDALGLVLDCGKCRYSQPSTV 194

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCV------DETSTPQSPGMLKSHYAPRS 234
           V V     V ILR G +  + LKR  S    YCV      +   +P +  +++ H A R 
Sbjct: 195 VRV-VGNHVEILRSGVVSEKILKRLSS----YCVVFVCTGNTCRSPMAEVLMQKHAAERF 249

Query: 235 QVRLRAI 241
             +L  +
Sbjct: 250 GCKLEEL 256


>gi|171741085|ref|ZP_02916892.1| hypothetical protein BIFDEN_00151 [Bifidobacterium dentium ATCC
           27678]
 gi|283455537|ref|YP_003360101.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium Bd1]
 gi|171276699|gb|EDT44360.1| hypothetical protein BIFDEN_00151 [Bifidobacterium dentium ATCC
           27678]
 gi|283102171|gb|ADB09277.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium Bd1]
          Length = 220

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 10/214 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ +ITD + L +A E +  G  I IPT+TVYG+A D RN  AIR++Y +K+RP   PL 
Sbjct: 3   EVRTITDES-LAQAVEIIRDGGLIVIPTDTVYGVACDPRNVEAIRKIYMVKQRPKYKPLQ 61

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117
             ++ I  +       P+ L+ LA +F PG   P+    D  S   I         T   
Sbjct: 62  VLLASIDGLDALRLDLPVPLNRLAAMFMPGAFSPIAEARDNCSLATIRRDPATGKTTQGV 121

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P    T +++   G PLA  SANRSG+ S   V   +  ++   + L +DGG +   +
Sbjct: 122 RIPNSAATLRILRAVG-PLAATSANRSGEESAQTVDEAV-EALGDAVGLYLDGGATPGHV 179

Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208
            ST+V      +  + ILR G +    +++A+++
Sbjct: 180 SSTVVAADPHGRDGISILREGVIREAVIRKALTL 213


>gi|222153025|ref|YP_002562202.1| hypothetical protein SUB0873 [Streptococcus uberis 0140J]
 gi|222113838|emb|CAR41937.1| conserved hypothetical protein [Streptococcus uberis 0140J]
          Length = 199

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 8/192 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L+ G  + +PTETVYG+   + + TA+  +Y++KKRP    +  +V+D   + + +  
Sbjct: 7   EILNNGGALVLPTETVYGIFAKALDETAVNHVYQLKKRPRDKAMNLNVADYQTILEFSKE 66

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
            P  L  L + F PGPLT++L   +   +     +   T  FR+P    T  LI+  G P
Sbjct: 67  QPSYLKDLFEAFLPGPLTIILK--ANNKVPVWINSGKSTVGFRLPNHSLTADLIKKTG-P 123

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG  S      IL++   +      D  I+  G +STIV++  E K +ILR 
Sbjct: 124 LIGPSANISGNESGKEFASILAAFDHEVAGYEDDQAIT--GQDSTIVDLSGE-KAKILRQ 180

Query: 195 GGLEIETLKRAI 206
           G L ++ LK+ +
Sbjct: 181 GALTVDELKKVV 192


>gi|297559306|ref|YP_003678280.1| Sua5/YciO/YrdC/YwlC family protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843754|gb|ADH65774.1| Sua5/YciO/YrdC/YwlC family protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 261

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 10/183 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82
           + +PT+TVYG+  D+ +PTA+ RL   K R    P    V   SM   +A VD L  H  
Sbjct: 30  VVLPTDTVYGIGTDAFSPTAVARLLATKGRGREMPPPVLVG--SMRAANALVDDLGNHGR 87

Query: 83  -LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L + FWPGPLTLV     +       T    T   R+P       L++  G P+A+ SA
Sbjct: 88  DLMEEFWPGPLTLVCTATPSLSWDLGDTKG--TVGVRMPMDPVALDLLKEVG-PMAVSSA 144

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N+SGQ S T V+  +     +++ + +DGG ++  + STIV++      R+LR G + IE
Sbjct: 145 NKSGQPSATRVEEAIEQLGDEDVAVYLDGGETESRVSSTIVDLTYAVP-RVLRAGAISIE 203

Query: 201 TLK 203
            L+
Sbjct: 204 QLR 206


>gi|306823415|ref|ZP_07456790.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium ATCC
           27679]
 gi|309802724|ref|ZP_07696828.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553122|gb|EFM41034.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium ATCC
           27679]
 gi|308220788|gb|EFO77096.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 220

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 10/214 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ +ITD + L +A E +  G  I IPT+TVYG+A D RN  AIR++Y +K+RP   PL 
Sbjct: 3   EVRTITDES-LAQAVEIIRDGGLIVIPTDTVYGVACDPRNVEAIRKIYMVKQRPKYKPLQ 61

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117
             ++ I  +       P+ L+ LA +F PG   P+    D  S   +         T   
Sbjct: 62  VLLASIDGLDALRLDLPVPLNRLAAMFMPGAFSPIAEARDNCSLATVRRDPATGKTTQGV 121

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P    T +++   G PLA  SANRSG+ S   V   +  ++   + L +DGG +   +
Sbjct: 122 RIPNSAATLRILRAVG-PLAATSANRSGEESAQTVDEAV-EALGDAVDLYLDGGATPGHV 179

Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208
            ST+V      +  + ILR G +    +++A+++
Sbjct: 180 SSTVVAADPHGRDGISILREGVIREAVIRKALTL 213


>gi|223983284|ref|ZP_03633477.1| hypothetical protein HOLDEFILI_00757 [Holdemania filiformis DSM
           12042]
 gi|223964777|gb|EEF69096.1| hypothetical protein HOLDEFILI_00757 [Holdemania filiformis DSM
           12042]
          Length = 201

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 12/195 (6%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            E L+ G  +A PT+TVYGLAV      AI ++ E K+RP   P    VS  + +++ A 
Sbjct: 15  VEILNRGGVVAFPTDTVYGLAVRYDLKEAILKMKEAKQRPETKPFPMMVSSKAQIERVAV 74

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134
            D  S  L   + PG LTLV       +I  L T    T   R+P   F  ++I   G P
Sbjct: 75  TDARSQKLIDQWMPGALTLVFK--KRPEIDELVTNGFPTIGIRMPDDDFVLEIINRVGVP 132

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKKVRI 191
           L +PSAN SGQ S T  + +L     K++   ID    G S     ST+ +   + +++I
Sbjct: 133 LLVPSANLSGQPSCTTSEEVL-----KQLDGRIDAVVLGESGASTASTVCDTTGD-ELKI 186

Query: 192 LRPGGLEIETLKRAI 206
           LR G +++E L+ +I
Sbjct: 187 LRQGPIKLEDLEASI 201


>gi|300087769|ref|YP_003758291.1| Sua5/YciO/YrdC/YwlC family protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527502|gb|ADJ25970.1| Sua5/YciO/YrdC/YwlC family protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 205

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 102/198 (51%), Gaps = 7/198 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+ A + L  G  +A PT+TVY LA    + +AI R+++IK R     L   V+D   ++
Sbjct: 10  LKTATQILVDGGIVAFPTDTVYCLAAAICHESAIERIFQIKGRQTTKALPVLVADSIQMR 69

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK--LIE 129
           + A V  ++  L + F PG LTL+L       +  L T    T   R+P G T    LI+
Sbjct: 70  QVAEVSSVAEMLVRRFMPGALTLILP--KKPLVPDLVTGGKPTVAVRIP-GHTLALYLIK 126

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   SAN SG+ S+T    +  S I   I  I+DGG+   G+ESTIV++      
Sbjct: 127 AVGSPLTGTSANLSGRGSVTTAMEV-ESQIGGRIDSIVDGGLCPGGIESTIVDLTGLTP- 184

Query: 190 RILRPGGLEIETLKRAIS 207
           R++R G +  E +++ I 
Sbjct: 185 RLVRSGAVPKEEIEKIIG 202


>gi|221632454|ref|YP_002521675.1| Sua5/YciO/YrdC/YwlC family protein [Thermomicrobium roseum DSM
           5159]
 gi|221156754|gb|ACM05881.1| Sua5/YciO/YrdC/YwlC family protein [Thermomicrobium roseum DSM
           5159]
          Length = 209

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 10/210 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+++   +  ++  A + L  G  +  PT+TVYG+      P A+ RLY  K RP   P+
Sbjct: 1   MKVLRADEPGSVEIAAQVLREGGLVVFPTDTVYGVGAVVDRPDAVARLYVAKGRPLDKPI 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTAC 116
              ++D+  ++K A  V P    LA+ FWPG LT+V+     L    +       L+   
Sbjct: 61  PVLIADLDQLEKLAREVTPEVQLLAQHFWPGALTIVVPAQPWLPREIVRETGAVGLRMPD 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
             V  G    +I   G  +A  SANRSG+     V+  +  ++   + L IDGG +  G+
Sbjct: 121 HPVALG----IISGAGGAVATTSANRSGEREACTVEEAI-GALGDAVDLYIDGGRTPGGI 175

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            ST+V  +  + V +LR G L +E ++  +
Sbjct: 176 PSTVVAFEGSRLV-VLRRGALPVEVIEEVL 204


>gi|329942862|ref|ZP_08291641.1| yrdC domain protein [Chlamydophila psittaci Cal10]
 gi|332287455|ref|YP_004422356.1| putative Sua5/YciO/yrdC family protein [Chlamydophila psittaci 6BC]
 gi|325507262|gb|ADZ18900.1| putative Sua5/YciO/yrdC family protein [Chlamydophila psittaci 6BC]
 gi|328815122|gb|EGF85111.1| yrdC domain protein [Chlamydophila psittaci Cal10]
 gi|328914703|gb|AEB55536.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydophila psittaci 6BC]
          Length = 288

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 19/216 (8%)

Query: 4   MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           MS+TD +  LR+A ++LD G  IA PT+TVYGL V    P A  ++Y++K R     L+ 
Sbjct: 1   MSVTDPDFFLRQAADYLDQGKVIAFPTDTVYGLGVALNYPNAEEKIYDLKHRDQGKSLVV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           +V+ I  ++K +    LS H  KL   F PGPLTL++D       H     + +   FR+
Sbjct: 61  YVNTIEDIEKFSGCT-LSTHALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRI 112

Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                  KLI+  G PL   SAN S        K +L    C+E   +I G  S  GLES
Sbjct: 113 LSIPIVNKLIDLAG-PLLGTSANISNFPPAITSKEVL-EDFCQEDICVIPGCCS-YGLES 169

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
           T+++      ++I R G +  + ++  +  +++ C+
Sbjct: 170 TVISAD---PLKIYREGMIPHQVIEDVVGEKIDACL 202


>gi|218281197|ref|ZP_03487721.1| hypothetical protein EUBIFOR_00284 [Eubacterium biforme DSM 3989]
 gi|218217585|gb|EEC91123.1| hypothetical protein EUBIFOR_00284 [Eubacterium biforme DSM 3989]
          Length = 208

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 15/183 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA+PT+TVYG+ V   N   + RL   K RP   P+   VS++  +K+ A VD     +A
Sbjct: 32  IALPTDTVYGVGVKYGNLDDLERLKRAKHRPETKPIPMMVSNVEQMKQVALVDERIEKIA 91

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
             F PG LTLV+++  + D  P  T  L T   R+P   F   +I+    P+ + SAN+S
Sbjct: 92  AKFLPGALTLVVNVKESVD--PAYTNGLSTIAIRIPDEKFILDVIDELNCPILVTSANQS 149

Query: 144 GQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEK-KVRILRPGGLEI 199
           G+ +      + S  + +++P  IDG   G  K    STIV+  C K K+ ILRPG + +
Sbjct: 150 GEKT-----ALTSDDVYEQLPK-IDGIVLGTCKALQASTIVD--CTKDKLVILRPGPISL 201

Query: 200 ETL 202
           E L
Sbjct: 202 EEL 204


>gi|309775205|ref|ZP_07670216.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917024|gb|EFP62753.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 234

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 20/207 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++  ++L  G  +A PT+TVYGL V   N  A++ L E K RP   P+   V+++
Sbjct: 36  DKKDVKEVAQYLKEGKVVAFPTDTVYGLGVIYENEEALQALKESKGRPENKPIPTMVANV 95

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A ++  +  LAK F PG  T++L    T  +    T    T   R+P   F  +
Sbjct: 96  EQMQQIAVMNEAACKLAKAFMPGAFTMILKKKET--LPAYVTNGFPTVGIRMPNDPFVLQ 153

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLEST 179
           LI   G PL + SANRSG+ +    + +L           +DG I  I        L ST
Sbjct: 154 LIAECGKPLLVTSANRSGEETGVRDEQVLKQ---------LDGRIDAIVLGEADGKLAST 204

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           IV++  ++ V ++R G +  E +++ +
Sbjct: 205 IVDMSTQEAV-LVREGPVTAEDIQKVL 230


>gi|325114035|emb|CBZ49593.1| sua5/YciO/YrdC/YwlC family protein, related [Neospora caninum
           Liverpool]
          Length = 791

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 79/178 (44%), Gaps = 41/178 (23%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV------- 70
           F   GL +A PTETVYGL   +  P A  R++  KKRPA +PLICHV  +          
Sbjct: 149 FRRGGL-VAFPTETVYGLGAAATVPAACNRVFFCKKRPASDPLICHVVSVQQAFEQVFDL 207

Query: 71  ----KKHASVDPLSLH----------------------LAKLFWPGPLTLVL------DL 98
                + ++ D L+ +                      LA  FWPGPL++V       D 
Sbjct: 208 DEEDSEQSARDRLTENPTAFPRKFTPQERRDLRLLIETLADAFWPGPLSIVAKGKILEDR 267

Query: 99  LSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
              T +    TA  +    R P   +   LI   G P+A PSANR G+IS T  KH+L
Sbjct: 268 KDGTGVALAVTAGTRLVAVRCPNHPYALSLIAAAGVPIAAPSANRFGRISPTRAKHVL 325


>gi|195154030|ref|XP_002017926.1| GL17434 [Drosophila persimilis]
 gi|194113722|gb|EDW35765.1| GL17434 [Drosophila persimilis]
          Length = 335

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 13/209 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  + D  AL+ A + L  G  IA+PT+TVYGLA D+ N  AI+R+YEIK R    P+  
Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V++I  ++++     LS  L     PGPLT+V++         L+    K    R+P  
Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTHELSNRFLNPTTSKIG-IRIPDF 233

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--- 177
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G  +IGL    
Sbjct: 234 QFIRALCSVWHEQPLALTSANRSSAPSSLQVTEF--HSLWPQLGAVFDAG--QIGLTEER 289

Query: 178 ---STIVNVQCEKKVRILRPGGLEIETLK 203
              ST++++       I+R G    +TL+
Sbjct: 290 RLASTVIDLATPGYYEIVRAGVALKQTLR 318


>gi|198458321|ref|XP_001360991.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
 gi|198136301|gb|EAL25567.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
          Length = 335

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 109/212 (51%), Gaps = 19/212 (8%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  + D  AL+ A + L  G  IA+PT+TVYGLA D+ N  AI+R+YEIK R    P+  
Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRV 119
            V++I  ++++     LS  L     PGPLT+V++    LS   ++P +T+ +     R+
Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTPELSNRFLNP-TTSKIG---IRI 230

Query: 120 P-CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           P   F + L   +   PLA+ SANRS   S   V      S+  ++  + D G  +IGL 
Sbjct: 231 PDFQFIRALCSVWHEQPLALTSANRSSAPSSLQVTEF--RSLWPQLGAVFDAG--QIGLT 286

Query: 178 ------STIVNVQCEKKVRILRPGGLEIETLK 203
                 ST++++       I+R G    +TL+
Sbjct: 287 EERRLASTVIDLATPGYYEIVRAGVALKQTLR 318


>gi|225872631|ref|YP_002754088.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793984|gb|ACO34074.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 210

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79
           +G  + +PT+T YGLAVD  N  A+  +YE+K R    PL   +++     + A  VD  
Sbjct: 23  SGKVVGMPTDTFYGLAVDPVNLRAVESIYELKSRQKHKPLSLLIANPGQAYELAREVDNH 82

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138
              LA+ FWPGPLT+++   S   +   STAN      RVP     + ++E  G P+   
Sbjct: 83  FDRLAERFWPGPLTVIVKAGSRLPLR--STANTGNVALRVPDAEIPRAVVEALGLPITAT 140

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGL 197
           SAN       T    +    + + IPLI+DGG +   L +TIV++     + +ILR G +
Sbjct: 141 SANLQNAAECTYASCV-RDQLGERIPLIVDGGPTPRSLPTTIVDLSAGGGQWQILREGAI 199


>gi|296876520|ref|ZP_06900571.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432513|gb|EFH18309.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parasanguinis
           ATCC 15912]
          Length = 203

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 9/200 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+AG  + +PTETVYG+   + +  A+  +YE+K+RP    L  +V+D   ++ ++   P
Sbjct: 8   LEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPRDKALNLNVADEKTIRIYSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L   F PGPLT++L   +   +     + L T  FR+P    T +LI  YG PL 
Sbjct: 68  SYLTKLIHSFLPGPLTIILQ--ANDKVPDWIHSGLDTVGFRIPAHPKTLELIRKYG-PLV 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG  S T  + I+ S   + +P I D      G +STI+++    K RILR G 
Sbjct: 125 GPSANLSGHASGTKYEAIV-SEFDQVVPGIEDDDFL-TGQDSTILDISG-SKARILRQGS 181

Query: 197 LEIETLKRAISVELEYCVDE 216
           +    L   +  EL +  DE
Sbjct: 182 ITKTDLLAQVP-ELSFEEDE 200


>gi|148263967|ref|YP_001230673.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter uraniireducens Rf4]
 gi|146397467|gb|ABQ26100.1| translation factor SUA5 [Geobacter uraniireducens Rf4]
          Length = 202

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 4/168 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  E L+ G  +A PT+T YG+     N   I R+Y IK+R    P     +D+S + ++
Sbjct: 17  QVVEVLNKGGVVAYPTDTTYGIGCSIFNKRGIERIYSIKQREKKKPFSFICADLSDIARY 76

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           A V   +  L K   PGP T VLD  +T+ +  L     KT   R+P       +++  G
Sbjct: 77  AKVSNYAFKLMKRLLPGPYTFVLD--ATSVVPDLLMTKQKTVGIRIPANKICLAVVKQLG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           HP+   SAN SG+  I +   +  S + K I L IDGGI    + S +
Sbjct: 135 HPIVTTSANLSGEEPIGDPFQV-ESYLGKLIDLTIDGGILSADVSSVV 181


>gi|322387786|ref|ZP_08061395.1| Sua5/YciO/YrdC family protein [Streptococcus infantis ATCC 700779]
 gi|321141653|gb|EFX37149.1| Sua5/YciO/YrdC family protein [Streptococcus infantis ATCC 700779]
          Length = 200

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 104/196 (53%), Gaps = 14/196 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68
           + K  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  + H+ DI 
Sbjct: 2   MEKIKQELEKGGAVVLPTETVYGLFAKALDKKAVDHVYQLKRRPRDKALNLNVAHLDDIL 61

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
              K+    P    L   F PGPLT++L+  +   +     ++L T  FR+P    T +L
Sbjct: 62  NFSKNQP--PYLQKLVDSFLPGPLTIILE--ANDKVPYWVNSDLMTVGFRMPSHPITLEL 117

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ-CE 186
           I  +G PL  PSAN SGQ S  + + IL     +E+ L I+      G +STI+++  C 
Sbjct: 118 IREFG-PLIGPSANISGQASGASFEEIL-KDFGQEV-LGIEDDAFLTGQDSTILDLTAC- 173

Query: 187 KKVRILRPGGLEIETL 202
            K RILR G +  E +
Sbjct: 174 -KARILRQGSITREDI 188


>gi|222055790|ref|YP_002538152.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. FRC-32]
 gi|221565079|gb|ACM21051.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. FRC-32]
          Length = 202

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 10/173 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A E L+ G  +A PT+T YG+     N   I R+Y IK+R    P     +D+S + 
Sbjct: 15  LAQAVEILEKGGVVAYPTDTTYGIGCSIFNKKGIERIYAIKQRDRKKPFSFICADLSDIA 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----CGFTKKL 127
            +A V   +  + K F PGP T +LD  +T+ +  L     KT   R+P    C    KL
Sbjct: 75  HYARVSNYAFKVMKRFLPGPYTFILD--ATSVVPDLCMTKQKTVGIRIPANKICLAITKL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           +   GHP+   SAN SG+  I +   +  +++ K I L +DGG+    + S +
Sbjct: 133 L---GHPIITTSANLSGEDPIGDPFQV-ENTLGKLIDLTVDGGVLTADVSSVV 181


>gi|220916607|ref|YP_002491911.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954461|gb|ACL64845.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 212

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  +  PTET YGL   + +  A+ RL   K RP   PL    +D   V + AS++  +
Sbjct: 18  AGGIVVYPTETFYGLGALASDDAALVRLAAAKLRPEGKPLPLVAADREQVDRVASLEGAA 77

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             LA   WPGPLTLVL   +   +    TA   T   R+P     + L    G  L   S
Sbjct: 78  ARLAGRLWPGPLTLVLP--ARPGLSEAITAGSGTVGVRIPGSEVARALARMAGGALVSTS 135

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG      V+  L +++  ++  ++D G +  GL ST+V +  E  +R++RPG + I
Sbjct: 136 ANLSGGPPPDRVEA-LDAALRGQVDHVLDAGPTPGGLPSTVVAIAGE-TLRVVRPGAVSI 193

Query: 200 ETLKRAIS 207
           E +  A+ 
Sbjct: 194 EQVTAALG 201


>gi|281491066|ref|YP_003353046.1| Sua5/YciO/YrdC/YwlC family RNA-binding protein [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374824|gb|ADA64344.1| RNA-binding protein, Sua5/YciO/YrdC/YwlC family [Lactococcus lactis
           subsp. lactis KF147]
 gi|326406101|gb|ADZ63172.1| Sua5/YciO/YrdC/YwlC family RNA-binding protein [Lactococcus lactis
           subsp. lactis CV56]
          Length = 306

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 8/195 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L +G    +PTETVYGL  D+ N  A+++LY +K RP    L  ++S    + K+
Sbjct: 111 RAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTEKALNMNISSFEDILKY 170

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           +   P+ L  + + F PGPLT++L+  ++ D+         T  FR+P    T+K+I+  
Sbjct: 171 SINQPVYLQKIVEAFLPGPLTIILE--ASKDVPEWIHIGKSTVGFRMPNIAVTQKIIKEV 228

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G  L  PSAN SG  S +     LS  I +   + +    S  GL++TI+++  EK  ++
Sbjct: 229 G-VLVGPSANLSGSKSPSFFAD-LSPEILENAAVAVQDD-SIYGLDTTIIDLTQEKP-KL 284

Query: 192 LRPGGLEIETLKRAI 206
           LR G +  E L + +
Sbjct: 285 LRQGAVTKEELLKKV 299


>gi|314927456|gb|EFS91287.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL044PA1]
 gi|328907542|gb|EGG27308.1| SUA5 related protein [Propionibacterium sp. P08]
          Length = 295

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 10/211 (4%)

Query: 3   IMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           I+ + D +A    L +A + +  G  I +PT+TVYG+  D+ NP A++RL   K+R    
Sbjct: 53  ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112

Query: 59  PLICHVSD-ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P    VSD +++      +   +  LA+ +WPG LTL+L    +  +  L   N  T   
Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMD-LGETN-GTLAV 170

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T++L+   G P+A+ SAN+SG  +    +   +  +  E+ + +D G S++G 
Sbjct: 171 RVPDQDQTRELLRMTG-PMAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGE 228

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            STI++       +++R G L +E +    S
Sbjct: 229 SSTIIDFVSTADGKVVRQGALSLEAIHEVAS 259


>gi|313837663|gb|EFS75377.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA2]
 gi|314972603|gb|EFT16700.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA3]
          Length = 295

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 10/211 (4%)

Query: 3   IMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           I+ + D +A    L +A + +  G  I +PT+TVYG+  D+ NP A++RL   K+R    
Sbjct: 53  ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112

Query: 59  PLICHVSD-ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P    VSD +++      +   +  LA+ +WPG LTL+L    +  +  L   N  T   
Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMD-LGETN-GTLAV 170

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T++L+   G P+A+ SAN+SG  +    +   +  +  E+ + +D G S++G 
Sbjct: 171 RVPDQDQTRELLRMTG-PMAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGE 228

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            STI++       +++R G L +E +    S
Sbjct: 229 SSTIIDFVSTADGKVVRQGALSLEAIHEVAS 259


>gi|95929617|ref|ZP_01312359.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684]
 gi|95134314|gb|EAT15971.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684]
          Length = 204

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 92/172 (53%), Gaps = 6/172 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PT+T+YG+  D  N   I+++Y++K+R    P     SD+S + ++A V  ++  + 
Sbjct: 28  IAYPTDTIYGVGCDIFNKKGIKKIYQLKRRDVKKPFSFICSDLSEISRYAHVSNMAFKIM 87

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
           K   PGP T VLD  ++  +  L     +T   R+P    T +++   GHPL   SAN S
Sbjct: 88  KRHLPGPYTFVLD--ASRVVPDLVMTKQRTVGIRMPDNAITLEIVRQLGHPLVTTSANIS 145

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           G  +  +   ++     K + +++DGG    G  ST+++++ + ++ +LR G
Sbjct: 146 GDETYQD-PSLIHDDWGKHLDMVVDGG-RLYGDPSTVISLRND-QIEVLRQG 194


>gi|69249628|ref|ZP_00605026.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO]
 gi|68194107|gb|EAN08647.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO]
          Length = 120

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 8  DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
          D   L++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPLI HV+  
Sbjct: 7  DETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASF 66

Query: 68 SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDL 98
            VK++  +  P +  + K FWPGPLTL+  +
Sbjct: 67 EQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKI 98


>gi|15672582|ref|NP_266756.1| hypothetical protein L189883 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723495|gb|AAK04698.1|AE006293_4 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 270

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 8/195 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L +G    +PTETVYGL  D+ N  A+++LY +K RP    L  ++S    + K+
Sbjct: 75  RAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERALNMNISSFEDILKY 134

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           +   P+ L  + + F PGPLT++L+  ++ D+         T  FR+P    T+K+I+  
Sbjct: 135 SINQPVYLQKIVEAFLPGPLTIILE--ASKDVPEWIHIGKSTVGFRMPNIAVTQKIIKEV 192

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G  L  PSAN SG  S +     LS  I +   + +    S  GL++TI+++  EK  ++
Sbjct: 193 GV-LVGPSANLSGSKSPSFFAD-LSPEILENAAVAVQDD-SIYGLDTTIIDLTQEKP-KL 248

Query: 192 LRPGGLEIETLKRAI 206
           LR G +  E L + +
Sbjct: 249 LRQGAVTKEELLKKV 263


>gi|50842729|ref|YP_055956.1| SUA5 related protein [Propionibacterium acnes KPA171202]
 gi|50840331|gb|AAT82998.1| SUA5 related protein [Propionibacterium acnes KPA171202]
          Length = 307

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 76  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 135

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 136 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 193

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 194 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 251

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 252 DGKVVRQGALSLEAI 266


>gi|189233999|ref|XP_001811736.1| PREDICTED: similar to CG33786 CG33786-PA, partial [Tribolium
           castaneum]
          Length = 210

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 26/203 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I D +A   A + L +G  IA+PT+TVYGLA D+ N T+I +LY IK R    P+   + 
Sbjct: 7   IRDPHAEALAVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAICLG 66

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG--- 122
           D+  VK  A +  L   L +   PGP+T++L   ST D         K+  F    G   
Sbjct: 67  DVPQVKAWAKIGHLPQGLLESLLPGPVTVILTSASTLD---------KSLSFNAKVGIRI 117

Query: 123 ----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE- 177
               F + L    G PLA+ SAN S + S   +       +  ++  + DGG   +GL+ 
Sbjct: 118 PDYHFIRALARGLGRPLALTSANLSNEPSSLTINEF--QDLWAQVGAVFDGG--NLGLDD 173

Query: 178 -----STIVNVQCEKKVRILRPG 195
                ST++++       I+R G
Sbjct: 174 SRRRASTVIDLSECGLFTIVRHG 196


>gi|11497366|ref|NP_051465.1| hypothetical protein BBU11 [Borrelia burgdorferi B31]
 gi|11497448|ref|NP_051542.1| hypothetical protein BB_T06 [Borrelia burgdorferi B31]
 gi|216264952|ref|ZP_03436942.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           156a]
 gi|6382387|gb|AAF07698.1|AE001582_6 conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|6435847|gb|AAF08548.1|AE001583_3 conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|34734011|gb|AAQ81893.1| conserved hypothetical protein [Borrelia burgdorferi]
 gi|215980592|gb|EEC21401.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           156a]
          Length = 330

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 149/333 (44%), Gaps = 30/333 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   +  + A + +  G  I  PT+TVY +  +  +  A+R +  +KK+    PL+ +V 
Sbjct: 6   IISEDQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPLMLYVD 65

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            I  +K+ +S  P S   L + F PGPLT VL    +  I      NL T   R+P   T
Sbjct: 66  TIEKIKELSSHVPKSAKILMEKFSPGPLTYVLK--KSIKIPKFINNNLDTVAIRIPKNKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIGL 176
              LI    +PL + SAN S + S T+      S   KE+  ++ G I       S IG+
Sbjct: 124 ALNLIRKLKNPLVVSSANLSKRPSSTSF-----SMALKELNGLVGGIIMPKKNKDSNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ESTI+    +  V ILRPG +  + +++ +     Y V+     ++   LK  ++ R ++
Sbjct: 179 ESTIIEFDSKDNVIILRPGAITKKMIEKVLGS--RYKVN--YAKETKIDLKKMFSYRLRI 234

Query: 237 RLRAIHV--NPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYMK 287
            +       N R+ L     V I     +    S      N+     L E A NL+  + 
Sbjct: 235 PVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKELV 294

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            A++     I    + N  LG AINNR+ +A++
Sbjct: 295 NAEEKYDQVIV-EIVENEELGYAINNRIVKASS 326


>gi|73748639|ref|YP_307878.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1]
 gi|289432664|ref|YP_003462537.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT]
 gi|73660355|emb|CAI82962.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1]
 gi|288946384|gb|ADC74081.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT]
          Length = 213

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 9/198 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  +  PT+TVY +   + N  A+ R+++IK R     L   + DIS + 
Sbjct: 14  INRAVQVLKNGGVVIFPTDTVYAVGALASNTHAVNRVFDIKGRTNTKGLPALIGDISQIH 73

Query: 72  KHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GFTKKLI 128
           + A +  PL+  LA  +WPG LTLV   L  TD  PL  T   +T   R+P      +++
Sbjct: 74  QVAKIFPPLARKLAAEYWPGGLTLV---LPKTDNIPLELTGGNETVAIRIPNQAAVIEML 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+   SAN SG  S  N        +   +  I+DGG    G+ESTIV V  + +
Sbjct: 131 KRVAEPVTGTSANLSGCKSSLNASE-AKIQLGDRVDFILDGGQVSGGVESTIVTVNND-E 188

Query: 189 VRILRPGGL-EIETLKRA 205
           ++I+R G + E + +K A
Sbjct: 189 LKIIRQGAIKESDIMKTA 206


>gi|282853792|ref|ZP_06263129.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139]
 gi|282583245|gb|EFB88625.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139]
          Length = 287

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 56  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 115

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 116 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 173

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 174 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 231

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 232 DGKVVRQGALSLEAI 246


>gi|314981453|gb|EFT25547.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA3]
 gi|315092117|gb|EFT64093.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA4]
          Length = 290

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 59  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 235 DGKVVRQGALSLEAI 249


>gi|314923484|gb|EFS87315.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL001PA1]
 gi|315103527|gb|EFT75503.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA2]
          Length = 290

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 59  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 235 DGKVVRQGALSLEAI 249


>gi|237735225|ref|ZP_04565706.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229380970|gb|EEO31061.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 201

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 9/201 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + NA+ +  + +     +A PTETV+GL V   +  A+  LYE+K R     +   +S  
Sbjct: 7   EKNAIEEVAKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAISMMISKA 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             ++K+A VD  +  L   F PG +T++L       I    TA+L T   R+P   F   
Sbjct: 67  EDIEKYAYVDETAKKLIAAFMPGMITIILK--KRPHIDDYFTASLDTIGIRIPDDPFVLS 124

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQC 185
           L++  G P+ + SAN SG+ S+ + K ++     K IPLI+ G  ISK    STIV++  
Sbjct: 125 LLDKTG-PMLVTSANLSGENSLVDDKAVMKVFHGK-IPLIVKGESISKKA--STIVDL-S 179

Query: 186 EKKVRILRPGGLEIETLKRAI 206
           + KV ILR G +  E +   I
Sbjct: 180 KGKVEILRLGDISKEQIAEVI 200


>gi|314966528|gb|EFT10627.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL082PA2]
 gi|315092952|gb|EFT64928.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL060PA1]
 gi|327327352|gb|EGE69128.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL103PA1]
          Length = 290

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 59  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGKTN-GTLAVRVPDQDQTREL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 235 DGKVVRQGALSLEAI 249


>gi|313772060|gb|EFS38026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL074PA1]
 gi|313791910|gb|EFS40011.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA1]
 gi|313801608|gb|EFS42848.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA2]
 gi|313810260|gb|EFS47981.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL083PA1]
 gi|313818788|gb|EFS56502.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL046PA2]
 gi|313820560|gb|EFS58274.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA1]
 gi|313822635|gb|EFS60349.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA2]
 gi|313825432|gb|EFS63146.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL063PA1]
 gi|313830590|gb|EFS68304.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL007PA1]
 gi|313833626|gb|EFS71340.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL056PA1]
 gi|313838321|gb|EFS76035.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL086PA1]
 gi|314924925|gb|EFS88756.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA3]
 gi|314960550|gb|EFT04652.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA2]
 gi|314962566|gb|EFT06666.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL082PA1]
 gi|314973591|gb|EFT17687.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL053PA1]
 gi|314975813|gb|EFT19908.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL045PA1]
 gi|314978721|gb|EFT22815.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL072PA2]
 gi|314983708|gb|EFT27800.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA1]
 gi|314987889|gb|EFT31980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA2]
 gi|314989700|gb|EFT33791.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA3]
 gi|315080407|gb|EFT52383.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL078PA1]
 gi|315084736|gb|EFT56712.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL027PA2]
 gi|315085420|gb|EFT57396.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA3]
 gi|315088522|gb|EFT60498.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL072PA1]
 gi|315095864|gb|EFT67840.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL038PA1]
 gi|315105834|gb|EFT77810.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL030PA1]
 gi|327326416|gb|EGE68206.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL096PA2]
 gi|327443485|gb|EGE90139.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL013PA2]
 gi|327445688|gb|EGE92342.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL043PA2]
 gi|327448328|gb|EGE94982.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL043PA1]
 gi|327453371|gb|EGF00026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL092PA1]
 gi|328754697|gb|EGF68313.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL020PA1]
 gi|328760893|gb|EGF74458.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL099PA1]
          Length = 290

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 59  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 235 DGKVVRQGALSLEAI 249


>gi|313764218|gb|EFS35582.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL013PA1]
 gi|313812713|gb|EFS50427.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL025PA1]
 gi|313816311|gb|EFS54025.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL059PA1]
 gi|313827395|gb|EFS65109.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL063PA2]
 gi|314915696|gb|EFS79527.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA4]
 gi|314917935|gb|EFS81766.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA1]
 gi|314920318|gb|EFS84149.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA3]
 gi|314931538|gb|EFS95369.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL067PA1]
 gi|314955549|gb|EFS99952.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL027PA1]
 gi|314957923|gb|EFT02026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA1]
 gi|314967571|gb|EFT11670.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA1]
 gi|315098769|gb|EFT70745.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL059PA2]
 gi|315101461|gb|EFT73437.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL046PA1]
 gi|315108753|gb|EFT80729.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL030PA2]
 gi|327450547|gb|EGE97201.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA3]
 gi|327454114|gb|EGF00769.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL083PA2]
 gi|328753197|gb|EGF66813.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL025PA2]
 gi|328753964|gb|EGF67580.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA1]
          Length = 290

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 59  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 235 DGKVVRQGALSLEAI 249


>gi|167755050|ref|ZP_02427177.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402]
 gi|167705100|gb|EDS19679.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402]
          Length = 201

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 9/201 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + NA+ +  + +     +A PTETV+GL V   +  A+  LYE+K R     +   +S  
Sbjct: 7   EKNAIEEVAKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAISMMISKA 66

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             ++K+A VD  +  L   F PG +T++L       I    TA+L T   R+P   F   
Sbjct: 67  EDIEKYAYVDETAKKLIAAFMPGMITIILK--KRPHIDDYFTASLDTIGIRIPDDPFVLS 124

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQC 185
           L++  G P+ + SAN SG+ S+ + K ++     K IPLI+ G  ISK    STIV++  
Sbjct: 125 LLDKTG-PMLVTSANLSGENSLVDDKAVMKVFHGK-IPLIVKGESISKEA--STIVDL-S 179

Query: 186 EKKVRILRPGGLEIETLKRAI 206
           + KV ILR G +  E +   I
Sbjct: 180 KGKVEILRLGDISKEQIAEVI 200


>gi|289425314|ref|ZP_06427091.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187]
 gi|289428531|ref|ZP_06430215.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165]
 gi|295130810|ref|YP_003581473.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137]
 gi|289154292|gb|EFD02980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187]
 gi|289158225|gb|EFD06444.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165]
 gi|291376823|gb|ADE00678.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137]
 gi|315077780|gb|EFT49831.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL053PA2]
          Length = 287

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 56  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 115

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 116 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 173

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 174 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 231

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 232 DGKVVRQGALSLEAI 246


>gi|310779285|ref|YP_003967618.1| translation factor SUA5 [Ilyobacter polytropus DSM 2926]
 gi|309748608|gb|ADO83270.1| translation factor SUA5 [Ilyobacter polytropus DSM 2926]
          Length = 209

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 9/193 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           + +G  I  PT+TVYG+        A++++Y  K+R   +PLI  VSD ++V+K A +D 
Sbjct: 20  VKSGELIIYPTDTVYGVGGIIEKEEALKKIYVAKERTFSSPLIALVSDENIVEKIAYIDK 79

Query: 79  LSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
               + KL   FWPG LT++L      ++  +  +  ++   R+P       +I   G  
Sbjct: 80  NKEKIEKLMKSFWPGALTIILR--KKKNVPSVMVSGGESIGVRMPNHPLALDIIRACGGI 137

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           LA  SAN SG+ S      + S    K + +++DGG   +G+ESTI++++  +K  ILR 
Sbjct: 138 LATTSANISGEPSPKRFSDV-SEEFKKRVDILVDGGACNLGIESTIIDMR--EKPFILRH 194

Query: 195 GGLEIETLKRAIS 207
           GG+  E +++ I 
Sbjct: 195 GGISKEEIEKIIG 207


>gi|332675654|gb|AEE72470.1| SUA5 related protein [Propionibacterium acnes 266]
          Length = 280

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 49  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 108

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 109 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 166

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 167 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 224

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 225 DGKVVRQGALSLEAI 239


>gi|312148920|gb|ADQ31566.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi JD1]
          Length = 330

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 149/333 (44%), Gaps = 30/333 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   +  + A + +  G  I  PT+TVY +  +  +  A+R +  +KK+    PL+ +V 
Sbjct: 6   IISEDQFKIALKLIKMGEIIVFPTDTVYSIGANIYDEYAVRMINLVKKKSINEPLMLYVD 65

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            I  +K+ +S  P S   L + F PGPLT VL    +  I      NL T   R+P   T
Sbjct: 66  TIEKIKELSSHVPKSAKILMEKFSPGPLTYVLK--KSIKIPKFINNNLDTVAIRIPKNKT 123

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIGL 176
              LI    +PL + SAN S + S T+      S   KE+  ++ G I       S IG+
Sbjct: 124 ALNLIRKLKNPLVVSSANLSKRPSSTSF-----SMALKELNGLVGGIIMPKKNKDSNIGI 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ESTI+    +  V ILRPG +  + +++ +     Y V+     ++   LK  ++ R ++
Sbjct: 179 ESTIIEFDSKDNVIILRPGAITKKMIEKVLGS--RYKVN--YAKETKIDLKKMFSYRLRI 234

Query: 237 RLRAIHV--NPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYMK 287
            +       N R+ L     V I     +    S      N+     L E A NL+  + 
Sbjct: 235 PVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKELV 294

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            A++     I    + N  LG AINNR+ +A++
Sbjct: 295 NAEEKYDQVIV-EIVENEELGYAINNRIVKASS 326


>gi|327331709|gb|EGE73446.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL096PA3]
          Length = 290

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 59  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 235 DGKVVRQGALSLEAI 249


>gi|313807751|gb|EFS46238.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA2]
          Length = 290

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 59  DALEQAADAIADGECIVLPTDTVYGIGADALNTLAVQRLLNAKERGRDMPPPVLVSDSVA 118

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 235 DGKVVRQGALSLEAI 249


>gi|327329872|gb|EGE71626.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL097PA1]
          Length = 300

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD ++
Sbjct: 59  DALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSVA 118

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +      +   +  LA+ +WPG LTLVL    +  +  L   N  T   RVP    T++L
Sbjct: 119 LPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMD-LGETN-GTLAVRVPDQDQTREL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 177 LRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETL 202
             +++R G L +E +
Sbjct: 235 DGKVVRQGALSLEAI 249


>gi|224543569|ref|ZP_03684108.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523496|gb|EEF92601.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM
           15897]
          Length = 206

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 7/175 (4%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A PTETVYG+A    +   + R+ EIKKR     +   +S    VKK+  VD  + 
Sbjct: 20  GKIVAFPTETVYGVACLFDDLKGLDRIMEIKKRNPNKAVTLMLSKKDDVKKYGLVDEGTQ 79

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSA 140
            +   F PG +T+VL  L + D   +S  +  T   R+P   F   LI+  G PL++ SA
Sbjct: 80  RVIDKFMPGRMTIVLKRLDSVDSRHVSGKD--TIGIRIPDSSFVLSLIDQTG-PLSVTSA 136

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           N SGQ + TN K +L + +  +I +++ G  +     ST+V++  +  VRILR G
Sbjct: 137 NLSGQGNTTNEKEVL-AQLDGQIDMVVRGQTAS-ATASTVVDL-SQGDVRILREG 188


>gi|323356868|ref|YP_004223264.1| translation factor (SUA5) [Microbacterium testaceum StLB037]
 gi|323273239|dbj|BAJ73384.1| putative translation factor (SUA5) [Microbacterium testaceum
           StLB037]
          Length = 253

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 27/217 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +R A + +  G  + +PT+TVYG+A D+ N  A+  L E K R    P    V+ +  
Sbjct: 15  SGMRHARQAIGRGELVVLPTDTVYGIAADAFNARAVAGLLEAKGRGRQQPPPVLVAGVGT 74

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDL-----LSTTDIHPLSTANLKTACFRVPC-G 122
           ++   +  P ++  L + FWPG LT+VL           D H        T   R+P   
Sbjct: 75  LRALVAEIPAAVDDLVREFWPGGLTIVLPAQPSLSWDLGDTH-------GTVAVRMPAHH 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            T +L+E  G PLA+ SAN +G    + I + + +L  S+       +D G S+ G+ ST
Sbjct: 128 LTLELLEETG-PLAVSSANLTGMAAAVDIDSARDMLGDSVSA----YLDSGPSETGIAST 182

Query: 180 IVNVQ-----CEKKVRILRPGGLEIETLKRAISVELE 211
           IV+        E +VR+LR G +  E L+  +   LE
Sbjct: 183 IVDATTLVGGAEPRVRVLREGAVSRERLREVLGDLLE 219


>gi|256830242|ref|YP_003158970.1| Sua5/YciO/YrdC/YwlC family protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579418|gb|ACU90554.1| Sua5/YciO/YrdC/YwlC family protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 204

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 7/200 (3%)

Query: 10  NALRKA--CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +A+R+A   EF    L +  PTET Y L   +   +A+ R++ +K RP   PL   +SD 
Sbjct: 2   SAVREAEVLEFARGRL-VIYPTETFYALGCLATMHSAVERIFSVKGRPEGKPLPLIISDW 60

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKK 126
            M ++   +      LA+ FWPGPL++V+++     + PL+      +  R+ P     +
Sbjct: 61  QMAERFLRLTSAQEKLARKFWPGPLSIVVEV--DQRVSPLAQDRGGRSAVRMSPHPIAAR 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSI-CKEIPLIIDGGISKIGLESTIVNVQC 185
           L    G PL   SANRSG+     ++ +    +   E  +I D      GL ST+V +  
Sbjct: 119 LCREAGAPLVSSSANRSGRPPACRLEELDPELVRLSEALVITDSPWPGGGLPSTLVEIVG 178

Query: 186 EKKVRILRPGGLEIETLKRA 205
              VRILR G + +E +  A
Sbjct: 179 ANSVRILRAGAIPMEEISAA 198


>gi|95007168|emb|CAJ20389.1| hypothetical protein, conserved [Toxoplasma gondii RH]
          Length = 663

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 31/168 (18%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-------- 69
           F   GL +A PTETVYGL   +  P A  R++  KKRPA +PLICHV  +          
Sbjct: 55  FRRGGL-VAFPTETVYGLGAAATLPHACSRVFRCKKRPASDPLICHVVSVQQAFEQVYDL 113

Query: 70  ----VKKHASVDPLSLH-----------LAKLFWPGPLTLVL------DLLSTTDIHPLS 108
                ++ A  + LSL            LA  FWPGPL++V       D      +    
Sbjct: 114 DEGETEEAARGESLSLQEKRDLRVLIATLADAFWPGPLSIVAKGKILEDRRDGKGVALAV 173

Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
           TA  +    R P   +   LI   G P+  PSANR G+IS T   H++
Sbjct: 174 TAGTRFVAARCPNHPYALSLIAAAGVPIVAPSANRFGRISPTRASHVI 221


>gi|237841787|ref|XP_002370191.1| yrdC domain protein [Toxoplasma gondii ME49]
 gi|211967855|gb|EEB03051.1| yrdC domain protein [Toxoplasma gondii ME49]
 gi|221482657|gb|EEE20995.1| yrdC domain protein, putative [Toxoplasma gondii GT1]
 gi|221503150|gb|EEE28856.1| yrdC domain protein, putative [Toxoplasma gondii VEG]
          Length = 762

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 76/168 (45%), Gaps = 31/168 (18%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-------- 69
           F   GL +A PTETVYGL   +  P A  R++  KKRPA +PLICHV  +          
Sbjct: 155 FRRGGL-VAFPTETVYGLGAAATLPHACSRVFRCKKRPASDPLICHVVSVQQAFEQVYDL 213

Query: 70  ----VKKHASVDPLSLH-----------LAKLFWPGPLTLVL------DLLSTTDIHPLS 108
                ++ A  + LSL            LA  FWPGPL++V       D      +    
Sbjct: 214 DEGETEEAARGESLSLQEKRDLRVLIATLADAFWPGPLSIVAKGKILEDRRDGKGVALAV 273

Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
           TA  +    R P   +   LI   G P+  PSANR G+IS T   H++
Sbjct: 274 TAGTRFVAARCPNHPYALSLIAAAGVPIVAPSANRFGRISPTRASHVI 321


>gi|51246039|ref|YP_065923.1| hypothetical protein DP2187 [Desulfotalea psychrophila LSv54]
 gi|50877076|emb|CAG36916.1| hypothetical protein DP2187 [Desulfotalea psychrophila LSv54]
          Length = 218

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 103/204 (50%), Gaps = 12/204 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-IS 68
           +++ +A + +  G  +A PTET YGLAVD  N  AI RLY +K R    PL+  V++   
Sbjct: 20  SSILQAVDVIRRGGIVAFPTETSYGLAVDPYNVEAIERLYSLKGRHRSKPLLLLVANHAQ 79

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFRVPCGFTKKL 127
           ++    ++ PL   L   FWPGPLTL+     T  I  + T   KT A  R P    +  
Sbjct: 80  LLDCVCAIPPLYKPLIARFWPGPLTLIFQAKET--IPAILTGGSKTIAIRRSPHPVAQFF 137

Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +E+ G PL   SAN S +   ++  +  H+        +  IID G   +   STI+ V+
Sbjct: 138 VESAGIPLTATSANFSQKKPALTAQDCLHMFGDL----VDYIIDDGQRGLNGFSTILAVK 193

Query: 185 CEKKVRILRPGGLEIETLKRAISV 208
            E  + ++R G L ++T+ R + +
Sbjct: 194 KEGLI-VIREGELSLKTIARELDI 216


>gi|224796796|ref|YP_002642475.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23]
 gi|224554416|gb|ACN55801.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23]
          Length = 330

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 146/324 (45%), Gaps = 30/324 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + +  G  I  PT+TVY +  +  +  A+R +  +KK+    PL+ +V  I  +K+ +
Sbjct: 15  ALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPLMLYVDTIEKIKELS 74

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYG 132
           S  P S   L + F PGPLT VL    +  I      NL T   R+P   T   LI    
Sbjct: 75  SHVPKSAKILMEKFSPGPLTYVLK--KSIKIPKFINNNLDTVAIRIPKNKTALNLIRKLK 132

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIGLESTIVNVQC 185
           +PL + SAN S + S T+      S   KE+  ++ G I       S IG+ESTI+    
Sbjct: 133 NPLVVSSANLSKRPSSTSF-----SMALKELNGLVGGIIMPKKNKDSNIGIESTIIEFDS 187

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV-- 243
           +  V ILRPG +  + +++ +     Y V+     ++   LK  ++ R ++ +       
Sbjct: 188 KDNVIILRPGAITKKMIEKVLGS--RYKVN--YAKETKIDLKKMFSYRLRIPVHTFKRGD 243

Query: 244 NPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           N R+ L     V I     +    S      N+     L E A NL+  +  A++     
Sbjct: 244 NIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKELVNAEEKYDQV 303

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I    + N  LG AINNR+ +A++
Sbjct: 304 IV-EIVENEELGYAINNRIVKASS 326


>gi|269119268|ref|YP_003307445.1| Sua5/YciO/YrdC/YwlC family protein [Sebaldella termitidis ATCC
           33386]
 gi|268613146|gb|ACZ07514.1| Sua5/YciO/YrdC/YwlC family protein [Sebaldella termitidis ATCC
           33386]
          Length = 209

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 14/180 (7%)

Query: 25  IAI-PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-- 81
           IAI PT+TVYG+     NP  I R+YE K+R    P+I  +SDIS + K  S +   L  
Sbjct: 23  IAIFPTDTVYGIGAVYNNPEGIDRIYEAKQRDRSKPIIALISDISHLHKLISFEEEDLGN 82

Query: 82  --HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
              + K +WPG LT+V D          + A   T   R+P      ++IE+ G  +   
Sbjct: 83  ISEIMKKYWPGELTIVFDN------SKYNVAEDNTIGVRIPGDEILLRIIESCGGIVFTT 136

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ S    + I S  I ++   I+DGG    G+ ST++      K+ +LR G ++
Sbjct: 137 SANISGEKSPVKTQDI-SYDILEKTDFILDGGTILNGVPSTVIKYSA-GKISVLREGNIK 194


>gi|307127429|ref|YP_003879460.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           670-6B]
 gi|306484491|gb|ADM91360.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           670-6B]
          Length = 200

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  +   +   P
Sbjct: 9   LEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 68

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G PL 
Sbjct: 69  AYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG-PLI 125

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR G 
Sbjct: 126 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILRQGA 182

Query: 197 LEIETL 202
           ++ E +
Sbjct: 183 IKREDI 188


>gi|167044297|gb|ABZ08976.1| putative yrdC domain protein [uncultured marine crenarchaeote
           HF4000_APKG6B14]
          Length = 199

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 6/202 (2%)

Query: 4   MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           M I+ S+A ++ A + ++ G  +  PT+TVYGL  +  N  A+  LYEIKKR    P   
Sbjct: 1   MKISCSDADIQIAAKAINDGATVVFPTDTVYGLGCNPYNHEAVLSLYEIKKRKKTKPFPV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
                  ++K A  +PL   +A+ FWPGP+TL+L  +   +I      + K A  RVP  
Sbjct: 61  IGYAKKELEKIAEFNPLEEKIAEKFWPGPITLILK-VKDKEIQKSLGLDGKIA-VRVPNN 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +      L   SAN SG     + K    S       L++DGGI     ESTIV 
Sbjct: 119 QCVLALLKECKLLVATSANISGTAPFNDPKE--CSENLSGYDLLMDGGIISSQGESTIVE 176

Query: 183 VQCEKKVRILRPGGLEIETLKR 204
           ++    VRILR G +  E +K+
Sbjct: 177 IE-NNDVRILRKGNVSEEEIKK 197


>gi|148272340|ref|YP_001221901.1| hypothetical protein CMM_1160 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830270|emb|CAN01204.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 309

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 11/231 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R A + +  G  + IPT+TVYG+A D+ NP A++RL + K R    P    +   S 
Sbjct: 15  TGMRLARQAVGRGEVVVIPTDTVYGIAADAFNPDAVQRLLDAKGRGRDAPPPVLIPGQST 74

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +   A   P +   L   FWPG LT++L +   + +  L      T   R+P   F  +L
Sbjct: 75  LDALADFVPDVVRRLVDEFWPGGLTVIL-VAQPSLVWDLGETR-GTVALRMPANSFALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN----V 183
           +   G PLA+ SANR+GQ +    +  +   +   + + +D G +  G  STIV+     
Sbjct: 133 LAETG-PLAVSSANRTGQPAAATAQEAV-DQLGGSVDVFLD-GGAAGGAASTIVDASRVT 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
           Q   +VRI+R G +    +++ I  ELE  V   + P+ P +  +  APR 
Sbjct: 190 QAGGRVRIVREGAITRAQIQQLIGDELEPVVTAPTEPEEPAVPDAPEAPRG 240


>gi|322389537|ref|ZP_08063088.1| Sua5/YciO/YrdC family protein [Streptococcus parasanguinis ATCC
           903]
 gi|321143812|gb|EFX39239.1| Sua5/YciO/YrdC family protein [Streptococcus parasanguinis ATCC
           903]
          Length = 203

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 11/205 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+AG  + +PTETVYG+   + +  A+  +YE+K+RP    L  +V+    V+ ++   P
Sbjct: 8   LEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPREKALNLNVAGEEDVRIYSKDQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L   F PGPLT++L   +   +     + L T  FR+P    T +LI  YG PL 
Sbjct: 68  SYLTKLIDSFLPGPLTIILQ--ANEKVPGWIHSGLDTVGFRIPAHPKTLELIRKYG-PLV 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG  S T  + I+ S   + +P I D      G +STI+++    K RILR G 
Sbjct: 125 GPSANLSGHASGTKYQAIV-SEFDQVVPGIEDDDFL-TGQDSTILDISG-SKARILRQGS 181

Query: 197 LEIETLKRAISVELEYCVDETSTPQ 221
           +    L   +    E   +E   PQ
Sbjct: 182 ITKADLLAQVP---ELSFEEDELPQ 203


>gi|27364487|ref|NP_760015.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
 gi|81448837|sp|Q8DDD6|RIMN_VIBVU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288261|sp|Q7MGL3|RIMN_VIBVY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|27360606|gb|AAO09542.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
          Length = 186

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++  + L  G  +A PTE V+GL  D  N  AI RL  IK+RP+   LI   +D   ++
Sbjct: 5   LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 64

Query: 72  KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  LS   L ++F  WPGP T V+   ++     L T   +T   RV      +KL
Sbjct: 65  PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              YG PL   SAN SGQ     V+ +    +  +I +I+ G I +    S I + + E+
Sbjct: 123 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 181

Query: 188 KVR 190
            +R
Sbjct: 182 LLR 184


>gi|320154891|ref|YP_004187270.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
 gi|319930203|gb|ADV85067.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
          Length = 185

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++  + L  G  +A PTE V+GL  D  N  AI RL  IK+RP+   LI   +D   ++
Sbjct: 4   LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 63

Query: 72  KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  LS   L ++F  WPGP T V+   ++     L T   +T   RV      +KL
Sbjct: 64  PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              YG PL   SAN SGQ     V+ +    +  +I +I+ G I +    S I + + E+
Sbjct: 122 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 180

Query: 188 KVR 190
            +R
Sbjct: 181 LLR 183


>gi|149006294|ref|ZP_01830006.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|147762071|gb|EDK69033.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP18-BS74]
          Length = 199

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  +   +   P
Sbjct: 8   LEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 67

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G PL 
Sbjct: 68  AYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR G 
Sbjct: 125 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILRQGA 181

Query: 197 LEIETL 202
           ++ E +
Sbjct: 182 IKREDI 187


>gi|270292699|ref|ZP_06198910.1| Sua5/YciO/YrdC family protein [Streptococcus sp. M143]
 gi|270278678|gb|EFA24524.1| Sua5/YciO/YrdC family protein [Streptococcus sp. M143]
          Length = 200

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  + ++ DI    K+  
Sbjct: 9   LEKGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVAYLEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI+  G 
Sbjct: 68  --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIQETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|322376708|ref|ZP_08051201.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. M334]
 gi|321282515|gb|EFX59522.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. M334]
          Length = 200

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K RP   A+N  I  + DI    K+  
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKHRPRDKALNLNIASLEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L ++F PGPLT++L+  +   +     + L T  FR+P   FT  LI   G 
Sbjct: 68  --PAYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPFTLNLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + +  D  ++  G +STI+++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILEDFDQEVLGMEDDAFLT--GQDSTILDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGTIKREDI 188


>gi|315222984|ref|ZP_07864863.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus F0211]
 gi|315187934|gb|EFU21670.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus F0211]
          Length = 196

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L +G  + +PTETVYGL   + +  A+  +Y++K RP    L  +VS +  + 
Sbjct: 1   MDKIEEMLSSGGAVVLPTETVYGLFCKALDEQAVSHVYDLKGRPREKALNLNVSSLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           + +   P  L  L + F PGPLT++L   +   +     + +KT  FRVP    T  LI 
Sbjct: 61  QFSKHQPQYLKKLYQAFLPGPLTIILQ--ANEQVPVWVNSGMKTIGFRVPSHPKTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G PL  PSAN SG+ S  N + I++    + + +  D  ++  G +STI+++  E   
Sbjct: 119 KFG-PLIGPSANLSGKSSGVNFQQIMTDFNYEVLGIEDDAFLT--GQDSTILDLSGE-TA 174

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 175 YILRQGAVTCEEI 187


>gi|270015172|gb|EFA11620.1| hypothetical protein TcasGA2_TC030645 [Tribolium castaneum]
          Length = 203

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 26/194 (13%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + L +G  IA+PT+TVYGLA D+ N T+I +LY IK R    P+   + D+  VK  A
Sbjct: 3   AVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAICLGDVPQVKAWA 62

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-------FTKKL 127
            +  L   L +   PGP+T++L   ST D         K+  F    G       F + L
Sbjct: 63  KIGHLPQGLLESLLPGPVTVILTSASTLD---------KSLSFNAKVGIRIPDYHFIRAL 113

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
               G PLA+ SAN S + S   +       +  ++  + DGG   +GL+      ST++
Sbjct: 114 ARGLGRPLALTSANLSNEPSSLTINEF--QDLWAQVGAVFDGG--NLGLDDSRRRASTVI 169

Query: 182 NVQCEKKVRILRPG 195
           ++       I+R G
Sbjct: 170 DLSECGLFTIVRHG 183


>gi|183603846|ref|ZP_02722143.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           MLV-016]
 gi|225856677|ref|YP_002738188.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae P1031]
 gi|183577918|gb|EDT98446.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           MLV-016]
 gi|225724879|gb|ACO20731.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae P1031]
 gi|301799988|emb|CBW32578.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
 gi|332200607|gb|EGJ14679.1| yrdC domain protein [Streptococcus pneumoniae GA41317]
          Length = 200

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  +   +   P
Sbjct: 9   LENGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 68

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G PL 
Sbjct: 69  AYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG-PLI 125

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR G 
Sbjct: 126 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILRQGA 182

Query: 197 LEIETL 202
           ++ E +
Sbjct: 183 IKREDI 188


>gi|322391880|ref|ZP_08065345.1| Sua5/YciO/YrdC family protein [Streptococcus peroris ATCC 700780]
 gi|321145360|gb|EFX40756.1| Sua5/YciO/YrdC family protein [Streptococcus peroris ATCC 700780]
          Length = 200

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++ +  ++  +   P
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVEHVYQLKRRPKDKALNLNIASLEAIEFFSKNQP 68

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + LKT  FR+P    T  LI   G PL 
Sbjct: 69  TYLKRLVEAFLPGPLTIILE--ANDRVPYWVNSGLKTVGFRMPSHPITLDLIRETG-PLI 125

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG +S    K IL     + + L  D  ++  G +STI+++  + KV+ILR G 
Sbjct: 126 GPSANISGHVSGIVFKDILKDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 182

Query: 197 LEIETL 202
           +  E +
Sbjct: 183 ITREDI 188


>gi|148984976|ref|ZP_01818219.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922674|gb|EDK73791.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP3-BS71]
          Length = 199

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  +   +   P
Sbjct: 8   LENGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 67

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G PL 
Sbjct: 68  AYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR G 
Sbjct: 125 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILRQGA 181

Query: 197 LEIETL 202
           ++ E +
Sbjct: 182 IKREDI 187


>gi|196019468|ref|XP_002118987.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens]
 gi|190577439|gb|EDV18528.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens]
          Length = 185

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 5/175 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I IPT+T+Y L+ D+ N  AI+++Y+IK+R     L   +S+I M + +A+     L+LA
Sbjct: 1   ICIPTDTIYALSCDATNIEAIQKIYKIKQRALDKTLPMFMSNIKMARLYANFYKKELNLA 60

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
             FWPG LTLV  + +T    P    N +    RVP     + + ++   P+   SAN S
Sbjct: 61  DKFWPGALTLVSRIKNTHKNLPNLLKNNQKVAIRVPKNKLIQSVCQSINKPIIATSANIS 120

Query: 144 GQISITNVKHILSSSICKEIPLIIDGG--ISKIGLE-STIVNVQCEKKVRILRPG 195
            Q +I ++  I+      ++ LII     +S   L  STI+     +K RILR G
Sbjct: 121 NQKNINSLDEII-KEFENKVNLIIKDNRELSDNCLTASTIIEFTNNEKYRILRKG 174


>gi|194397422|ref|YP_002037657.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae G54]
 gi|194357089|gb|ACF55537.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae G54]
          Length = 200

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I  + DI    K+  
Sbjct: 9   LEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 68  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|296532236|ref|ZP_06894982.1| Sua5/YciO/YrdC/YwlC family protein [Roseomonas cervicalis ATCC
           49957]
 gi|296267433|gb|EFH13312.1| Sua5/YciO/YrdC/YwlC family protein [Roseomonas cervicalis ATCC
           49957]
          Length = 127

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 63/126 (50%), Gaps = 11/126 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +A   L AG  +A PTETVYGL  D+RN  A+  +Y  K RP  NPLI H S+    
Sbjct: 13  AVEQAAALLRAGRLVAFPTETVYGLGADARNDAAVAAIYAAKGRPRFNPLISHFSESGAA 72

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 D  +  LA  FWPGPLTLVL     + I  L+ A L +   RVP          
Sbjct: 73  FAEVVEDDRARALAARFWPGPLTLVLPRSPGSRISELAAAGLPSLAVRVPA--------- 123

Query: 131 YGHPLA 136
             HPLA
Sbjct: 124 --HPLA 127


>gi|169833958|ref|YP_001694466.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183603195|ref|ZP_02713042.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP195]
 gi|183603653|ref|ZP_02718594.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|221231775|ref|YP_002510927.1| hypothetical protein SPN23F_09450 [Streptococcus pneumoniae ATCC
           700669]
 gi|225854523|ref|YP_002736035.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae JJA]
 gi|225861005|ref|YP_002742514.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230458|ref|ZP_06964139.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255328|ref|ZP_06978914.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502958|ref|YP_003724898.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307067801|ref|YP_003876767.1| putative translation factor [Streptococcus pneumoniae AP200]
 gi|168996460|gb|ACA37072.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183572442|gb|EDT92970.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP195]
 gi|183575597|gb|EDT96125.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|220674235|emb|CAR68770.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722954|gb|ACO18807.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae JJA]
 gi|225728267|gb|ACO24118.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238553|gb|ADI69684.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794158|emb|CBW36568.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
 gi|306409338|gb|ADM84765.1| Putative translation factor (SUA5) [Streptococcus pneumoniae AP200]
 gi|327389394|gb|EGE87739.1| yrdC domain protein [Streptococcus pneumoniae GA04375]
 gi|332073354|gb|EGI83833.1| yrdC domain protein [Streptococcus pneumoniae GA17570]
 gi|332075370|gb|EGI85839.1| yrdC domain protein [Streptococcus pneumoniae GA41301]
 gi|332201493|gb|EGJ15563.1| yrdC domain protein [Streptococcus pneumoniae GA47368]
 gi|332202884|gb|EGJ16952.1| yrdC domain protein [Streptococcus pneumoniae GA47901]
          Length = 200

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 68  --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|172079499|ref|ZP_02708045.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043340|gb|EDT51386.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC1873-00]
          Length = 200

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 68  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|149012961|ref|ZP_01833850.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|303255578|ref|ZP_07341629.1| hypothetical protein CGSSpBS455_08777 [Streptococcus pneumoniae
           BS455]
 gi|147763114|gb|EDK70055.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|301801856|emb|CBW34574.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
 gi|302597434|gb|EFL64529.1| hypothetical protein CGSSpBS455_08777 [Streptococcus pneumoniae
           BS455]
          Length = 200

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 68  --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|317063168|ref|ZP_07927653.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688844|gb|EFS25679.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185]
          Length = 219

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 10/183 (5%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  I  PT+TVYG+     +  AI ++Y+ K+R   +PLI  VSD+S +++ A ++
Sbjct: 22  LLKDGNLIIYPTDTVYGVGGIIESDEAITKVYKAKERSFKSPLIVLVSDVSKIEEIAYIE 81

Query: 78  PLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYG 132
             +      L K FWPG LT++L+     ++  +  +  KT   R+P   T  K+IE  G
Sbjct: 82  EKNREKIEKLIKKFWPGGLTIILN--KKENVPDIMVSGGKTVGVRMPDLDTALKIIEAAG 139

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             L   SAN SG+ +  + +  LS +  + + +++DGG   IG  STI+++    K +IL
Sbjct: 140 GLLPTTSANISGEATPKSYEE-LSEAFKERVEILVDGGKCPIGNASTIIDMS--DKPKIL 196

Query: 193 RPG 195
           R G
Sbjct: 197 RTG 199


>gi|37681401|ref|NP_936010.1| putative translation factor [Vibrio vulnificus YJ016]
 gi|37200153|dbj|BAC95981.1| putative translation factor [Vibrio vulnificus YJ016]
          Length = 237

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++  + L  G  +A PTE V+GL  D  N  AI RL  IK+RP+   LI   +D   ++
Sbjct: 56  LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 115

Query: 72  KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  LS   L ++F  WPGP T V+   ++     L T   +T   RV      +KL
Sbjct: 116 PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 173

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              YG PL   SAN SGQ     V+ +    +  +I +I+ G I +    S I + + E+
Sbjct: 174 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 232

Query: 188 KVR 190
            +R
Sbjct: 233 LLR 235


>gi|257468920|ref|ZP_05633014.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185]
          Length = 216

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 10/183 (5%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  I  PT+TVYG+     +  AI ++Y+ K+R   +PLI  VSD+S +++ A ++
Sbjct: 19  LLKDGNLIIYPTDTVYGVGGIIESDEAITKVYKAKERSFKSPLIVLVSDVSKIEEIAYIE 78

Query: 78  PLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYG 132
             +      L K FWPG LT++L+     ++  +  +  KT   R+P   T  K+IE  G
Sbjct: 79  EKNREKIEKLIKKFWPGGLTIILN--KKENVPDIMVSGGKTVGVRMPDLDTALKIIEAAG 136

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             L   SAN SG+ +  + +  LS +  + + +++DGG   IG  STI+++    K +IL
Sbjct: 137 GLLPTTSANISGEATPKSYEE-LSEAFKERVEILVDGGKCPIGNASTIIDMS--DKPKIL 193

Query: 193 RPG 195
           R G
Sbjct: 194 RTG 196


>gi|148994241|ref|ZP_01823534.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|148998844|ref|ZP_01826280.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755271|gb|EDK62322.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147927382|gb|EDK78413.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP9-BS68]
          Length = 199

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 8   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 67  --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 122 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 178

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 179 QGAIKREDI 187


>gi|306829486|ref|ZP_07462676.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus mitis ATCC 6249]
 gi|304428572|gb|EFM31662.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus mitis ATCC 6249]
          Length = 200

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL  ++ +  A+  +Y++K+RP    L  +V+ +  +   +   P
Sbjct: 9   LEKGGAVVLPTETVYGLFANALDEKAVDHVYQLKRRPRDKALNLNVASLEDILHFSKNQP 68

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G PL 
Sbjct: 69  TYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 125

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S      IL     + + L  D  ++  G +STI+++  + KV+ILR G 
Sbjct: 126 GPSANISGQASGVTFAQILKDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 182

Query: 197 LEIETL 202
           ++ E +
Sbjct: 183 IKREDI 188


>gi|237650079|ref|ZP_04524331.1| hypothetical protein SpneC1_05027 [Streptococcus pneumoniae CCRI
           1974]
 gi|237822152|ref|ZP_04597997.1| hypothetical protein SpneC19_07568 [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 200

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 9   LEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 68  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|182683970|ref|YP_001835717.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae CGSP14]
 gi|182629304|gb|ACB90252.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae CGSP14]
          Length = 209

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 14/196 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68
           + K  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI 
Sbjct: 11  MDKIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 70

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              K+    P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  
Sbjct: 71  HFSKNQ---PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLD 125

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +
Sbjct: 126 LIRETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD 182

Query: 187 KKVRILRPGGLEIETL 202
            KV+ILR G ++ E +
Sbjct: 183 -KVKILRQGAIKREDI 197


>gi|116516461|ref|YP_816386.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae D39]
 gi|225858813|ref|YP_002740323.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 70585]
 gi|116077037|gb|ABJ54757.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae D39]
 gi|225721912|gb|ACO17766.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 70585]
          Length = 200

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 9   LEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 68  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|149003882|ref|ZP_01828705.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758112|gb|EDK65116.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP14-BS69]
          Length = 199

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 8   LEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 67  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 122 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 178

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 179 QGAIKREDI 187


>gi|330506808|ref|YP_004383236.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP-6]
 gi|328927616|gb|AEB67418.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP-6]
          Length = 190

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 9/186 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A  F+  G  +  PTETVYGL  ++ +  A+ R++ IKKRP   P+   VS + M+++ A
Sbjct: 5   AARFIIGGGVVVYPTETVYGLGANALDEQAVMRVFLIKKRPLSMPISLAVSSLEMLREVA 64

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIETYGH 133
            V    + + +   PGP+++   LL    I P + TA       R P   +   I     
Sbjct: 65  EVRDDDMDILEDLLPGPVSI---LLRKKSIVPDILTAGSSLVGIRFPDHESALRIIDKAG 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+   SANR+GQ +  + K + S  I   + L++DGG  K    ST+++++  K   I+R
Sbjct: 122 PITSTSANRTGQPAPVSAKEV-SKEIEDRVELVVDGGRCKYCQPSTLLDLENRK---IIR 177

Query: 194 PG-GLE 198
           PG GL+
Sbjct: 178 PGAGLD 183


>gi|303260466|ref|ZP_07346434.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262823|ref|ZP_07348760.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303265293|ref|ZP_07351203.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS397]
 gi|303266500|ref|ZP_07352387.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS457]
 gi|303268381|ref|ZP_07354177.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS458]
 gi|302636021|gb|EFL66519.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638378|gb|EFL68845.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP-BS293]
 gi|302642102|gb|EFL72453.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS458]
 gi|302643951|gb|EFL74211.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS457]
 gi|302645158|gb|EFL75395.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS397]
          Length = 209

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 18  LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 76

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 77  --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 131

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 132 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 188

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 189 QGAIKREDI 197


>gi|119025466|ref|YP_909311.1| Sua5/YciO/YrdC family protein [Bifidobacterium adolescentis ATCC
           15703]
 gi|154486893|ref|ZP_02028300.1| hypothetical protein BIFADO_00726 [Bifidobacterium adolescentis
           L2-32]
 gi|118765050|dbj|BAF39229.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084756|gb|EDN83801.1| hypothetical protein BIFADO_00726 [Bifidobacterium adolescentis
           L2-32]
          Length = 220

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 109/214 (50%), Gaps = 10/214 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I ++ D + L +A E +  G  + IPT+TVYG+A D RN  AIR+++  K+RP    L 
Sbjct: 3   EICTVNDES-LARAVEIIHDGGLVVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSLQ 61

Query: 62  CHVSDI-SMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116
             +  I SM K H ++ P+ L+ LA +F PG   P+    D  S   +    T    T  
Sbjct: 62  VLLPSIESMEKLHLTL-PVPLNRLAAMFMPGAFSPIAEAEDDCSLATLRHDPTTGKATQG 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       I     PLA  SANRSG+ S   V+   + ++   + L +DGG +   +
Sbjct: 121 VRIPNSAVALRILRATGPLAATSANRSGEESAQTVQEA-ADALGDAVDLYLDGGATPGHV 179

Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208
            ST+V     ++  + ILR G +    +++A+++
Sbjct: 180 SSTVVAADPHERDGIAILREGVIRELVIRKALTL 213


>gi|15902970|ref|NP_358520.1| hypothetical protein spr0926 [Streptococcus pneumoniae R6]
 gi|15458534|gb|AAK99730.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
          Length = 203

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 12  LEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 70

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 71  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 125

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 126 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 182

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 183 QGAIKREDI 191


>gi|34763117|ref|ZP_00144087.1| SUA5 protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887215|gb|EAA24316.1| SUA5 protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 217

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 9/190 (4%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78
           G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V     
Sbjct: 28  GSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSDKNK 87

Query: 79  -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
            L   LAK FWPG LT++L       I  +  +   T   R+P      K+IE  G  LA
Sbjct: 88  NLLEKLAKAFWPGALTVILK--RKEHIPSIMVSGGDTIGVRIPNLDLAIKIIELAGGILA 145

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
             SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR G 
Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKGA 203

Query: 197 LEIETLKRAI 206
           + I  +++ I
Sbjct: 204 ISIGEIEKII 213


>gi|242011385|ref|XP_002426431.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510536|gb|EEB13693.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 244

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 14/219 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+SI + +A   A   L  G  IAIPT+T+YG+A  ++N   +++LYEIKKR    PL  
Sbjct: 18  IISILEVSAASTAANLLFEGKVIAIPTDTIYGIAASTQNNYGLKKLYEIKKRDLNKPLSI 77

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVP 120
            VSD S +K       L+  L +   PGP+T+VL    L  + ++P    N      R+P
Sbjct: 78  CVSDTSEIKLWGETSHLNERLLEDLLPGPVTIVLKRKGLLNSFVNP----NTDLIGIRIP 133

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLE- 177
              F + L      P+A+ SAN S + S   +   +   +  ++  I DGG IS   L+ 
Sbjct: 134 NTNFVQALSRLCTVPIALTSANISFEQSPIEINDFI--HLWPKLDAIFDGGVISNSPLQR 191

Query: 178 --STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
             ST+V++       I+R G   I         +L YCV
Sbjct: 192 AGSTVVDLSEPGHYNIIREGNRNILNFLLLTDAKL-YCV 229


>gi|306825265|ref|ZP_07458607.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432701|gb|EFM35675.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 200

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  +   +   P
Sbjct: 9   LEKGRAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPREKALNLNVASLEDILHFSKNQP 68

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G PL 
Sbjct: 69  TYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLSTVGFRMPSHPITLDLIRETG-PLI 125

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S      IL     + + L  D  ++  G +STI+++  + KV+ILR G 
Sbjct: 126 GPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 182

Query: 197 LEIETL 202
           ++ E +
Sbjct: 183 IKREDI 188


>gi|319939132|ref|ZP_08013496.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus
           1_2_62CV]
 gi|319812182|gb|EFW08448.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus
           1_2_62CV]
          Length = 196

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L +G  + +PTETVYGL   + +  A+  +Y++K RP    L  +VS +  + 
Sbjct: 1   MDKIEEVLSSGGAVVLPTETVYGLFCKALDEQAVSHVYDLKGRPREKALNLNVSSLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           + +   P  L  L + F PGPLT++L   +   +     + +KT  FRVP    T  LI 
Sbjct: 61  QFSKHQPQYLKKLYQAFLPGPLTIILQ--ANEQVPIWVNSGMKTIGFRVPSHPKTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G PL  PSAN SG+ S  N + I+ +    E+ L I+      G +STI+++  E   
Sbjct: 119 KFG-PLIGPSANLSGKSSGVNFQQIM-TDFNHEV-LGIEDDAFLTGQDSTILDLSGE-TA 174

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 175 YILRQGAVTCEEI 187


>gi|148988474|ref|ZP_01819921.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|149019618|ref|ZP_01834937.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|147926155|gb|EDK77229.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147930993|gb|EDK81973.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP23-BS72]
          Length = 199

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 8   LENGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 67  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 122 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 178

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 179 QGAIKREDI 187


>gi|256833002|ref|YP_003161729.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM
           20603]
 gi|256686533|gb|ACV09426.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM
           20603]
          Length = 246

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 34/218 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            NAL +A   L  G  + +PT+TVYG+  D+ NP+A+  L   K R        H+    
Sbjct: 15  GNALDEAINQLHRGAVVVLPTDTVYGIGADAFNPSAVNALLRAKGRGR------HMPPPV 68

Query: 69  MVKKHASVDPLSLH-------LAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLK 113
           +V   A++D L+ H       LA+ FWPG LTL+         DL  T            
Sbjct: 69  LVASPATIDALATHVPEGARALAERFWPGGLTLICHAQPSLAWDLGETQ----------G 118

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           T   RVP   T   +     PLA+ SANR+G  +    +      +   + + +D G   
Sbjct: 119 TVALRVPDHPTALALLQRTGPLAVSSANRTGGEAALTAQQA-RDQLGDSVAVYLDAGEVP 177

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
            G+ STIV+   E  +R++R G + +E L RA++  L+
Sbjct: 178 GGVASTIVDATTE-NLRLIRAGAVSLEEL-RAVTFVLD 213


>gi|254251532|ref|ZP_04944850.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158]
 gi|124894141|gb|EAY68021.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158]
          Length = 281

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 120/266 (45%), Gaps = 43/266 (16%)

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHP----LSTANLKTACFRVPC-GFTKKLIETY-----G 132
           L   FWPGPLTL+L        HP      +    +   R P     + L+  +     G
Sbjct: 25  LIDAFWPGPLTLILKR------HPRIPDAVSGGQDSVGLRCPSHAVAQALLAAFSARRGG 78

Query: 133 HP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           H  +A PSANR G +S T  +H+       +   ++DGG S++G+ESTIV++       +
Sbjct: 79  HGGVAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGPSEVGIESTIVDL-SRGFPAL 135

Query: 192 LRPGGLEIETLKRAI--SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           LRPG +  + +   +  +  L    D T+ P++ G LK+HYAPR+ + L      P +AL
Sbjct: 136 LRPGHVSPQQIADVLGRAPRLPDGSDATA-PRASGTLKAHYAPRTPLALL-----PFDAL 189

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGA 294
                    + E   +    S+ G+  +A               A +L+  ++  D +  
Sbjct: 190 EPLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPHAYARDLYGMLRALDRAQV 249

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
           + I    +P     IA+N+RL RAAA
Sbjct: 250 ARILVEKLPETIDWIAVNDRLGRAAA 275


>gi|332708156|ref|ZP_08428149.1| Sua5/YciO/YrdC/YwlC family protein [Lyngbya majuscula 3L]
 gi|332353058|gb|EGJ32605.1| Sua5/YciO/YrdC/YwlC family protein [Lyngbya majuscula 3L]
          Length = 214

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 8/208 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+   D  A  KA + L  G  +   T+T+YG+       + I++++E+K R    PLI
Sbjct: 3   EILPADDQAARNKAVDLLKKGDVVVFSTDTIYGIGASIAKESGIKKIFEVKSRSPDKPLI 62

Query: 62  CHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRV 119
            +V+    +++     P S +   +  WPG ++    +   TDI  P  T+   T   R+
Sbjct: 63  IYVASFEQLQQVTQEIPESTIESLRKIWPGAMS---GIFPKTDIVPPFVTSGKDTVAVRI 119

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +L+   G PLA+ SAN SG  +      + ++ + + +PL++DGG +     S
Sbjct: 120 PNHPLCLELVRQVGAPLAVTSANVSGMETQKTAPEV-AAQLGERVPLVLDGGPNPEQQPS 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206
           T+V+       ++LR G      L++AI
Sbjct: 179 TLVDF-TGSPAQLLREGAWSFSKLRQAI 205


>gi|268325206|emb|CBH38794.1| conserved hypothetical protein, containing yrdC domain [uncultured
           archaeon]
          Length = 216

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 13/193 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +R A   +  G  I  PTETVYGL  D+ + TA+R +Y+IK+R    P+   VS   M
Sbjct: 7   SQIRAAIAIIKRGGTIVYPTETVYGLGADALSETAVREVYKIKRRDVTQPISVAVSSFEM 66

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKL 127
           + K A +DP    +     PGP+T+   LL   +I P L TA       R P      ++
Sbjct: 67  LHKVAYIDPGISEIISALLPGPVTV---LLKKKEIVPALLTAESDVLGVRFPDNEIATRI 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV---- 183
           IE  G P+   SAN SG+   T V+ +    I   + +II G   K  + ST+V++    
Sbjct: 124 IEETG-PITATSANVSGRTPPTCVEEV---EIEFLVDIIIHGTKCKYSMPSTVVDMTTAN 179

Query: 184 QCEKKVRILRPGG 196
           + + K++I R G 
Sbjct: 180 EGKAKIKIKRRGA 192


>gi|24379520|ref|NP_721475.1| hypothetical protein SMU.1083c [Streptococcus mutans UA159]
 gi|24377461|gb|AAN58781.1|AE014946_6 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 196

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 97/197 (49%), Gaps = 14/197 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68
           + K  E L  G  + +PTETVYGL   + +  A+  +Y++KKRP   AMN  +  + DI 
Sbjct: 1   MDKIEEALREGQAVVLPTETVYGLFAQALSKRAVDNVYDLKKRPREKAMNLNVASLEDIL 60

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              K A   P  L  L K F PGPLT+VL   +   +       L T  FRVP    T  
Sbjct: 61  AFSKEA---PAYLAELYKAFLPGPLTIVLK--ANEKVPAWINGGLSTVGFRVPAHPQTLA 115

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            I+  G PL  PSAN SGQ S    + I  +   + + +  D  I   G +STI+++   
Sbjct: 116 YIKQTG-PLIGPSANLSGQASGLVYREIQEAFANRLLGIQDDKAIK--GRDSTILDI-SS 171

Query: 187 KKVRILRPGGLEIETLK 203
            + +ILR G L  + ++
Sbjct: 172 SRAKILRQGALTQDAIQ 188


>gi|307706538|ref|ZP_07643345.1| yrdC domain protein [Streptococcus mitis SK321]
 gi|307617993|gb|EFN97153.1| yrdC domain protein [Streptococcus mitis SK321]
          Length = 199

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y+IK+RP   A+N  I  + DI    K+  
Sbjct: 8   LENGGAVVLPTETVYGLFAKALDEKAVNHVYQIKRRPRDKALNLNIASLEDILYFSKNQ- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G 
Sbjct: 67  --PTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPTTLDLIRETG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  + KV+ILR
Sbjct: 122 PLIGPSANISGQESGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILR 178

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 179 QGAIKREDI 187


>gi|262066500|ref|ZP_06026112.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379804|gb|EFE87322.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum
           ATCC 33693]
          Length = 217

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            I  I+D      A E L  G  I  PT+TVYGLA    N  +I  +Y  K R   +PLI
Sbjct: 9   NISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLI 67

Query: 62  CHVSDISMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             +S +  V++ A++      +   LA  FWPG LT++L       I  +  +   T   
Sbjct: 68  ALLSSVDKVEEVATISDENREILEKLAHTFWPGALTVILK--RKQHIPSIMVSGGDTIGV 125

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      K+I+  G  LA  SAN SG+ +  +    LS +I   + +++DGG  K+G 
Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGE 184

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            STI+++  +   +ILR G +  + + + I
Sbjct: 185 ASTIIDLTSDVP-KILRNGAISTDEITKII 213


>gi|15791118|ref|NP_280942.1| hypothetical protein VNG2312C [Halobacterium sp. NRC-1]
 gi|169236871|ref|YP_001690071.1| hypothetical protein OE4244F [Halobacterium salinarum R1]
 gi|10581723|gb|AAG20422.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727937|emb|CAP14725.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 198

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 6/173 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PTETVYGLA D+ +P AI   +E K+RP   PL     D+    +H +V        
Sbjct: 20  VVFPTETVYGLAADALDPDAIEAAFEAKRRPREKPLSFAFPDVEAAVEHVAVGETERAFM 79

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
             F PGP+T+V +   +  +  + T        RVP       +     PL   SAN SG
Sbjct: 80  AEFLPGPVTVVCEKRDS--VPDVLTGGRDRVGVRVPDSEVAVALLERVAPLTATSANVSG 137

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           + S+TN    L  +    +  ++D G S  G  ST+V+V    +  ILR G +
Sbjct: 138 EPSVTN-PAALDPAFRARVDAVVDAGESPGGTGSTVVDV---ARGEILRAGAV 186


>gi|194753758|ref|XP_001959177.1| GF12752 [Drosophila ananassae]
 gi|190620475|gb|EDV35999.1| GF12752 [Drosophila ananassae]
          Length = 342

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  + D  A+  A + L  G  IA+PT+TVYGLA D+ N  AI+RLYEIK R    P+  
Sbjct: 126 VCPVGDETAIPLARQCLLNGEVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 185

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V +I+ +++      LS  L     PGPLT+V++  S      L+    K    R+P  
Sbjct: 186 CVHNIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTSYLSNRFLNPTTSKIG-IRIPDF 244

Query: 122 GFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--- 177
            F   L   +   PLA+ SANRS   S   V      S+   +  + D G  +IGL    
Sbjct: 245 QFMSDLCAVWQDQPLALTSANRSSAPSSLQVSEF--QSLWPHLGAVFDAG--RIGLTEER 300

Query: 178 ---STIVNVQCEKKVRILRPG 195
              ST++++       I+R G
Sbjct: 301 RLASTVIDLATPGYYEIVRAG 321


>gi|196005123|ref|XP_002112428.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens]
 gi|190584469|gb|EDV24538.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens]
          Length = 219

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 17/206 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+  A E L AG  IA+PT+T+YG+A  ++ P A+ +LY  K R   NP+   V D++ +
Sbjct: 1   AVSAAKESLQAGNIIALPTDTIYGIAALAQLPNAVDKLYNTKGRRRDNPISICVGDVADL 60

Query: 71  KKHASVDP-----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           K+   + P     +   L     PGP+TLV        ++P    N      R+P   F 
Sbjct: 61  KRQVHLRPWCSVCVCDALLYDLLPGPVTLVFQRHPV--LNPKLNPNTNLVGIRIPDFPFI 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG------LE 177
           +++      PLA+ SAN+S  +S   +      S+  ++ +I DGG IS+ G      L 
Sbjct: 119 REVARACDQPLALTSANKSLALSSLAIDEF--QSLWDQLDVIFDGGRISQSGDDQSSRLG 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203
           ST++N+  E   +I+R G     T+K
Sbjct: 177 STVINLSVEGYFKIIRKGSAFENTVK 202


>gi|119715988|ref|YP_922953.1| translation factor SUA5 [Nocardioides sp. JS614]
 gi|119536649|gb|ABL81266.1| translation factor SUA5 [Nocardioides sp. JS614]
          Length = 219

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D+ +P A+R L   K R    P    VS  + +   A  V   +  L
Sbjct: 30  VVLPTDTVYGVGADAFDPAAVRGLLAAKGRGRDLPPPVLVSAATTLDALAVRVPGYARAL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
            + FWPGPLTLV    S+       T    T   R+P     ++++E  G PLA+ SAN+
Sbjct: 90  VEAFWPGPLTLVCHQQSSLQWDLGDTRG--TVAVRMPDHDVAREILERTG-PLAVSSANK 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           +G  + T+        +  ++ +I+DGG +  G  STIV+V   +  R+LR G L +E L
Sbjct: 147 TGMPAATDADQA-EDMLGDDVAVIVDGGPAPGGEASTIVDVTGAQG-RVLRRGALSLERL 204

Query: 203 KRAI 206
              +
Sbjct: 205 NEVL 208


>gi|294783757|ref|ZP_06749081.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480635|gb|EFG28412.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 217

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            I  I+D      A E L  G  I  PT+TVYGLA    N  +I  +Y  K R   +PLI
Sbjct: 9   NISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLI 67

Query: 62  CHVSDISMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             +S +  V++ A++      +   LA  FWPG LT++L       I  +  +   T   
Sbjct: 68  ALLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILK--RKEHIPSIMVSGGDTIGV 125

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      K+I+  G  LA  SAN SG+ +  +    LS +I   + +++DGG  K+G 
Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGE 184

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            STI+++  +   +ILR G +  + + + I
Sbjct: 185 ASTIIDLTSDVP-KILRNGAISTDEITKII 213


>gi|72163602|ref|XP_793502.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115954038|ref|XP_001190640.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 222

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 102/194 (52%), Gaps = 10/194 (5%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L +G  I++PT+T+YGLA  +++  A+ +LYE+K R    P+   ++ I  + +  
Sbjct: 21  AANSLMSGNVISVPTDTIYGLAALAQSAEAVEKLYEVKGRNGNKPIAICINCIEDIHRWG 80

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
            V  +S  + +   PGP+T++    S  +++P    + +    R+P   F ++L    G 
Sbjct: 81  YV-TVSDDILRDLLPGPVTVLFRRRS--ELNPEFNPSSELIGLRIPEYPFIQQLAAAVGE 137

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----STIVNVQCEKKV 189
           P+A+ SAN S Q S  +VK      +  +I L+ DGG+     E    ST+V++    + 
Sbjct: 138 PIALTSANPSAQRSTLSVKEF--EDLWSKIDLVFDGGVLSDSEESRQGSTVVDLSVMGRF 195

Query: 190 RILRPGGLEIETLK 203
            I+RPG  + +T+K
Sbjct: 196 SIIRPGSAQEKTVK 209


>gi|183603629|ref|ZP_02716060.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573819|gb|EDT94347.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC0288-04]
          Length = 200

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 9   LENGGAVILPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 68  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|313848034|emb|CBY17032.1| hypothetical protein Cpsi_5031 [Chlamydophila psittaci RD1]
          Length = 292

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 18/207 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+A ++LD G  IA PT+TVYGL V    P A  ++Y++K R     L+ +V+ I  ++
Sbjct: 14  LRQAADYLDQGKVIAFPTDTVYGLGVALNYPNAEEKIYDLKHRDQGKSLVVYVNTIEDIE 73

Query: 72  KHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
           K +    LS H  KL   F PGPLTL++D       H     + +   FR+       KL
Sbjct: 74  KFSGCT-LSTHALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRILSIPIVNKL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G PL   SAN S        K +L    C+E   +I G  S  GLEST+++     
Sbjct: 126 IDLAG-PLLGTSANISNFPPAITSKEVL-EDFCQEDICVIPGCCS-YGLESTVISAD--- 179

Query: 188 KVRILRPGGLEIETLKRAISVELEYCV 214
            ++I R G +  + ++  +  +++ C+
Sbjct: 180 PLKIYREGMIPHQVIEDVVGEKIDACL 206


>gi|170291088|ref|YP_001737904.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175168|gb|ACB08221.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 209

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 14/137 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +ALRK       G  I  PT+TVYGL  D+ N  A+RR+YE+K RP    L   VSDI M
Sbjct: 19  DALRK-------GKLIIYPTDTVYGLGADAENIDAVRRVYEVKGRPEEKRLTIAVSDIDM 71

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT-DIHPLSTANLKTACFRVP-CGFTKKL 127
            +++A VD +S  L + F PG +T +L   S   DI      N +    R+P      ++
Sbjct: 72  AERYAVVDEISRRLMEKFLPGKVTFILKKTSRVPDI-----VNPEAIGIRIPNIPIILRI 126

Query: 128 IETYGHPLAIPSANRSG 144
           I  +G  +   SAN+SG
Sbjct: 127 IREFGGAITATSANKSG 143


>gi|320528641|ref|ZP_08029794.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204]
 gi|320131007|gb|EFW23584.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204]
          Length = 199

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 99/180 (55%), Gaps = 10/180 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I++PT+TVYG+     +  A   L  +K+RP         +D++ +++ A V+  +  + 
Sbjct: 22  ISVPTDTVYGVCSQVFSHQAEENLRNVKRRPLTKAFPVMCADLAQIQEIAEVNERAKKVI 81

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRS 143
           + F PGP+T++   L   D   LS  NL T   R+    T  K+I+  G P+ + SAN+S
Sbjct: 82  EGFMPGPITVI---LKRKDGVNLSQENLDTIAIRMATSNTLAKIIKGLGRPIFMTSANQS 138

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETL 202
           G+ + T++  I  S  C ++  +++G +S  G  STIV+  C KK + ILRPG + ++ +
Sbjct: 139 GEPTCTSLDEIEKS--CPDLDGMVEGDVS-FGEASTIVD--CTKKELAILRPGPITMQDI 193


>gi|268326242|emb|CBH39830.1| conserved hypothetical protein, containing yrdC domain [uncultured
           archaeon]
          Length = 234

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 13/193 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +R A   +  G  I  PTETVYGL  D+ + TA+R++Y+IK+R    P+   VS   M
Sbjct: 25  SQIRAAIAIIKRGGTIVYPTETVYGLGADALSETAVRKVYKIKRRDVSQPISVAVSSFEM 84

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKL 127
           + K A  DP    +     PGP+T+   LL   +I P L TA       R P      ++
Sbjct: 85  LHKVAYTDPGISEILFALLPGPVTV---LLKKKEIVPALLTAESDVLGVRFPDNEIATRI 141

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV---- 183
           IE  G P+   SAN SG+   T V+ +    I   + +II G   K  + ST+V++    
Sbjct: 142 IEETG-PITATSANVSGRTPPTCVEEV---EIKFLVDIIIHGSKCKYSMPSTVVDMTTAN 197

Query: 184 QCEKKVRILRPGG 196
           + + K++I R G 
Sbjct: 198 EGKAKIKIKRRGA 210


>gi|332075636|gb|EGI86104.1| yrdC domain protein [Streptococcus pneumoniae GA17545]
          Length = 199

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 14/185 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I  + DI    K+  
Sbjct: 8   LENGRAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDILHFSKNQ- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G 
Sbjct: 67  --PAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRVTG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  + KV+ILR
Sbjct: 122 PLIGPSANISGQASGVTFNQILKDFDQEVLGLEDDAFLT--GQDSTIIDLSGD-KVKILR 178

Query: 194 PGGLE 198
            G ++
Sbjct: 179 QGAIK 183


>gi|111658251|ref|ZP_01408943.1| hypothetical protein SpneT_02000565 [Streptococcus pneumoniae
           TIGR4]
          Length = 200

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR---PAMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+R    A+N  +  + DI    K+  
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRRRDKALNLNVASLEDILYFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L ++F PGPLT++L+  +   +     + L T  FR+P    T  LI   G 
Sbjct: 68  --PTYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+N+  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILNLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|126330406|ref|XP_001380961.1| PREDICTED: similar to Ischemia/reperfusion inducible protein
           [Monodelphis domestica]
          Length = 394

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S AL  A   L AG  +A+PT+T+YG+A  +    A+  +Y +K R    PL   +  ++
Sbjct: 182 SEALTAAVTALRAGGLVAVPTDTLYGVACSACCSAALGAVYSLKGRSQTKPLAVCLGGVA 241

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            + K+  V  +   L +   PGP+TLV++       D++P +         R+P   F +
Sbjct: 242 DIYKYCQVR-VPRELLEDLLPGPVTLVMERSRELNKDLNPFT----PLVGIRIPDHAFMR 296

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NVK      +  ++ L+IDGG   IG        L 
Sbjct: 297 DLAQAFSGPLALTSANISSQPSSLNVKEF--QDLWPQLSLVIDGG--PIGDVKSPECRLG 352

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K RI+RPG
Sbjct: 353 STVVDLSVPGKYRIIRPG 370


>gi|145340914|ref|XP_001415562.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575785|gb|ABO93854.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 195

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 93/201 (46%), Gaps = 30/201 (14%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  IA+PT+T+YG A  + N  A+RRLYEIK R A  PL   V D+  V  + 
Sbjct: 1   AAAALRRGGVIAVPTDTIYGFAASAANGDAVRRLYEIKGRRAGVPLAIAVGDVRDVGTYG 60

Query: 75  SVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
               L         PGP T++L         +T +++P     +     RVP   F +++
Sbjct: 61  DDGHLREGALARLLPGPTTVLLRRRRGDAGRATPELNP----GVDLIGIRVPAHDFVREV 116

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILS-SSICKEIPLIIDGG-ISKIGLESTIVNV-- 183
              +G  +A+ SANRSG+ S T  +        C E   + DGG I    L STIV++  
Sbjct: 117 CRAHGGAIALTSANRSGETSATAAEEFAELWDACDE---VFDGGAIPAKRLGSTIVDLSS 173

Query: 184 ------------QCEKKVRIL 192
                       +C++ VR+L
Sbjct: 174 RANDFAIVRAGERCDELVRVL 194


>gi|15900893|ref|NP_345497.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae TIGR4]
 gi|14972495|gb|AAK75137.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae TIGR4]
          Length = 199

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR---PAMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+R    A+N  +  + DI    K+  
Sbjct: 8   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRRRDKALNLNVASLEDILYFSKNQ- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L ++F PGPLT++L+  +   +     + L T  FR+P    T  LI   G 
Sbjct: 67  --PTYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+N+  + KV+ILR
Sbjct: 122 PLIGPSANISGQASGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILNLSGD-KVKILR 178

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 179 QGAIKREDI 187


>gi|58696928|ref|ZP_00372427.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225630533|ref|YP_002727324.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi]
 gi|58536842|gb|EAL60054.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592514|gb|ACN95533.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi]
          Length = 195

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 29/199 (14%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
            L +  PTETVY LA ++ +  +I ++Y+IKKR    PL   VSDI  + K A V    +
Sbjct: 12  NLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYI 71

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTKKLIETYGHPLAIP-- 138
            L   F PGP+T +L         PL   N L    F+   G     I    HP+AI   
Sbjct: 72  DLINHFSPGPITYIL---------PLKNNNILPNEFFKDSIG-----IRIPEHPIAISIL 117

Query: 139 ----------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                     S N SG+ S+     I   SI + + ++I+      G+ESTI+++  E K
Sbjct: 118 NKLKVPIVATSTNISGKESVCKANDI-PQSIKQHLSVVIEDDELVSGIESTIIDL-TEDK 175

Query: 189 VRILRPGGLEIETLKRAIS 207
           +++LR G + ++T+  A S
Sbjct: 176 IKVLREGAISLQTVNNAFS 194


>gi|307704779|ref|ZP_07641675.1| yrdC domain protein [Streptococcus mitis SK597]
 gi|307621688|gb|EFO00729.1| yrdC domain protein [Streptococcus mitis SK597]
          Length = 199

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  ++  +  +   +   P
Sbjct: 8   LENGGAVVLPTETVYGLFAKALDEKAVNHVYQLKRRPRDKALNLNIDSLEDILHFSKNQP 67

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G PL 
Sbjct: 68  TYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S    + IL     + + L  D  ++  G +STI+++  + KV+ILR G 
Sbjct: 125 GPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGS 181

Query: 197 LEIETL 202
           ++ E +
Sbjct: 182 IKREDI 187


>gi|42520658|ref|NP_966573.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410398|gb|AAS14507.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 195

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 29/199 (14%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
            L +  PTETVY LA ++ +  +I ++Y+IKKR    PL   VSDI  + K A V    +
Sbjct: 12  NLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYI 71

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTKKLIETYGHPLAIP-- 138
            L   F PGP+T +L         PL   N L    F+   G     I    HP+AI   
Sbjct: 72  DLINHFSPGPITYIL---------PLKNNNMLPNEFFKDSIG-----IRIPEHPIAISIL 117

Query: 139 ----------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                     S N SG+ S+     I   SI + + ++I+      G+ESTI+++  E K
Sbjct: 118 NKLKVPIVATSTNISGKESVCKANDI-PQSIKQHLSVVIEDDELVSGIESTIIDL-TEDK 175

Query: 189 VRILRPGGLEIETLKRAIS 207
           +++LR G + ++T+  A S
Sbjct: 176 IKVLREGAISLQTVNNAFS 194


>gi|315613127|ref|ZP_07888037.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sanguinis ATCC
           49296]
 gi|315314689|gb|EFU62731.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sanguinis ATCC
           49296]
          Length = 200

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  +   +   P
Sbjct: 9   LEKGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPREKALNLNVASLEDILHFSKNQP 68

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + + T  FR+P    T  LI   G PL 
Sbjct: 69  TYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGIATVGFRMPSHPITLDLIRETG-PLI 125

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S      IL     + + L  D  ++  G +STI+++  + KV+ILR G 
Sbjct: 126 GPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 182

Query: 197 LEIETL 202
           ++ E +
Sbjct: 183 IKREDI 188


>gi|268532948|ref|XP_002631602.1| Hypothetical protein CBG20783 [Caenorhabditis briggsae]
 gi|187023055|emb|CAP37734.1| hypothetical protein CBG_20783 [Caenorhabditis briggsae AF16]
          Length = 216

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 104/192 (54%), Gaps = 18/192 (9%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHASV 76
           FL  G+ +A+PT+T+YG++  +  P +  RLY +K+RP   PL I   S  SM  K  S 
Sbjct: 26  FLRGGI-VALPTDTLYGIS--TLLPFS-DRLYALKQRPFEKPLGIFLPSPTSM--KLVSK 79

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
             +S  LA    PGP+TL+ + L T   + +P   AN+  AC RVP C     +    G 
Sbjct: 80  QTISDELANCLLPGPVTLMFERLPTLPAEFNP-GVANV--AC-RVPDCPIVSMICRKLGQ 135

Query: 134 PLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRI 191
           PLA  SAN SG  ++ T++ H     +   I LI+D G I   G  STIV++  E K RI
Sbjct: 136 PLAQTSANVSGSPLNPTSIDHF--KDLQPYIDLILDNGQIVSTGEGSTIVDLTVESKFRI 193

Query: 192 LRPGGLEIETLK 203
           +R G  E ET+K
Sbjct: 194 VRSGCAEKETMK 205


>gi|237739267|ref|ZP_04569748.1| SUA5 protein [Fusobacterium sp. 2_1_31]
 gi|229422875|gb|EEO37922.1| SUA5 protein [Fusobacterium sp. 2_1_31]
          Length = 217

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            I  I+D      A E  +  L I  PT+TVYGLA    N  +I  +Y  K R   +PLI
Sbjct: 9   NISDISDDKWTELADELKEGSL-IIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLI 67

Query: 62  CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             +S +  V++ A++   +      LA  FWPG LT++L       I  +  +   T   
Sbjct: 68  ALLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILK--RKEHIPNIMVSGGDTIGV 125

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      K+I+  G  LA  SAN SG+ +  +    LS +I   + +++DGG  K+G 
Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGE 184

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            STI+++  +   +ILR G +  + + + I
Sbjct: 185 ASTIIDLTSDVP-KILRNGAISTDEITKII 213


>gi|262038853|ref|ZP_06012200.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia goodfellowii
           F0264]
 gi|261747104|gb|EEY34596.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia goodfellowii
           F0264]
          Length = 201

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 10/203 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +N ++K  E L  G     PT+TVYG+    R  + I ++YEIKKR     +I  + DIS
Sbjct: 2   NNEIKKVTEILLEGGVAVFPTDTVYGIGALPREKSVI-KIYEIKKRDFSKKIIALIEDIS 60

Query: 69  MVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           M+ +  +  P ++     + K FWPG LT++    + T+        L+T   R+P   T
Sbjct: 61  MLNRIINETPENIEKISPVLKKFWPGELTVIFK--ANTEFTGKFDRELETIGVRIPKNET 118

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              +I+  G  L   SAN SG+ ++T +   LS  I ++   +I       G  STI+  
Sbjct: 119 ALSIIKNTGGILLTTSANISGEEAVTELDK-LSKEIREKADYVIGDDSKLTGKPSTIIKY 177

Query: 184 QCEKKVRILRPGGLEIETLKRAI 206
           +    + +LR G +  E +K+A+
Sbjct: 178 EN-GNIELLRKGNISSEDIKKAM 199


>gi|28493400|ref|NP_787561.1| hypothetical protein TWT433 [Tropheryma whipplei str. Twist]
 gi|28572489|ref|NP_789269.1| hypothetical protein TW335 [Tropheryma whipplei TW08/27]
 gi|28410621|emb|CAD67007.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
 gi|28476441|gb|AAO44530.1| unknown [Tropheryma whipplei str. Twist]
          Length = 225

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 47/229 (20%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A R A   + +G  I +PT+TVYGLA D+  P A+ RL EIK R A  P++      S+
Sbjct: 13  SAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAAPPVLVG----SI 68

Query: 70  VKKHASVDPL---SLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC- 121
               A VD L   +L LAK FWPGPLTLVL     LL              T   R+P  
Sbjct: 69  ETFQAIVDVLPEPALALAKRFWPGPLTLVLRTRPGLLWG-----------DTVAVRIPRH 117

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LE 177
            F  +L++  G PLA+ SAN SG+    +V+     S+  +  + IDG   +I     + 
Sbjct: 118 SFLLQLLDEIG-PLAVSSANISGRRPALSVRSA-RGSLRDKPAMYIDG--DRIDNPDRVP 173

Query: 178 STIVNVQ--CEKKV--------------RILRPGGLEIETLKRAISVEL 210
           S+IV++   CE                 R+LR G +  ++L++A+ ++L
Sbjct: 174 SSIVDLTDFCEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKL 222


>gi|156399845|ref|XP_001638711.1| predicted protein [Nematostella vectensis]
 gi|156225834|gb|EDO46648.1| predicted protein [Nematostella vectensis]
          Length = 224

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 10/196 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L  G  IA+PT+T+YG+A  +++  A+++LYEIK R    P+   V +I  VK
Sbjct: 20  IHAAVASLKLGHVIALPTDTIYGIAALTQSCNAVQKLYEIKGRHQEKPVAIAVGNIEDVK 79

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +   V      L  L  PGP+TLV +   T +++P           R+P   F +KL + 
Sbjct: 80  RWGKVTVSDDILTDLL-PGPVTLVFE--RTPELNPSLNPGTTLIGIRIPNHHFVRKLAKA 136

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----STIVNVQCE 186
              P+A+ SAN+S  +S   V+     S+   + L++DGG      E    ST++N+   
Sbjct: 137 CAEPIALTSANQSSAMSSLKVEEF--KSLWPHLDLVVDGGPVGDSPECRQGSTVINLSVP 194

Query: 187 KKVRILRPGGLEIETL 202
            +  I+R G    +TL
Sbjct: 195 GQFSIIREGSAYQQTL 210


>gi|169351563|ref|ZP_02868501.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552]
 gi|169291785|gb|EDS73918.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552]
          Length = 200

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + + NA+ +  + +     +A PTETV+GL +   +  A+  LYE+K R     +   ++
Sbjct: 5   LVEKNAIEEVAKLVSDNQVVAFPTETVFGLGIKFGSYEALNSLYELKHRDRHKAISMMIN 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +   ++K+A V+  +  + K F PG +T++L      D +   TA+L T   R+P   F 
Sbjct: 65  NPKDIEKYAYVNDQARKIIKSFMPGMVTIILKKREFIDDY--FTASLDTIGIRIPDDKFV 122

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNV 183
             L+E  G P+ + SAN SG+ ++ + K ++      +IPLI+ G  +SK    STI+++
Sbjct: 123 LSLLEKTG-PMLVTSANLSGEDTLVDDKAVM-KVFSGKIPLIVKGESVSKKA--STIIDL 178

Query: 184 QCEKKVRILRPGGL 197
             + KV ILR G +
Sbjct: 179 -SKGKVEILRVGDI 191


>gi|312863566|ref|ZP_07723804.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis
           F0396]
 gi|322517015|ref|ZP_08069904.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis ATCC
           49124]
 gi|311101102|gb|EFQ59307.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis
           F0396]
 gi|322124432|gb|EFX95929.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis ATCC
           49124]
          Length = 201

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E LD G  I +PTETVYGL   + + +A+  +YE+K RP    +  +V+    +  
Sbjct: 6   KQLRESLDNGEAIVLPTETVYGLFAKAMDESAVNHVYELKNRPIDKAMNLNVASYEDILS 65

Query: 73  HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++   P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++LI+ 
Sbjct: 66  YSKEQPKYLKQLYDAFLPGPLTIILK--ANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL  PSAN+SG+ S  +   I +    +      D  +  +G++STI+++      R
Sbjct: 124 EG-PLIGPSANKSGKESGRHFDDIRAQFDFQVTGYRDDNAL--LGVDSTILDLSV-SPAR 179

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G +  + L  A+
Sbjct: 180 ILRQGKITKDDLLAAL 195


>gi|68074035|ref|XP_678932.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56499550|emb|CAH97465.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 522

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 8/180 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + N  +   E +     I  PTETVYGL  +S +  +++ ++++K RP  +P+I HV 
Sbjct: 11  IKNDNVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPISDPIISHVY 70

Query: 66  DISMVKK---HASVDPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           DI+       H ++    +++  + F PGPL+++    +   +  + TA+ +    R+P 
Sbjct: 71  DIAQAFDQLYHINMYEKYIYILNMKFSPGPLSIIAK--AKEHLPLILTAHTQFCAVRIPN 128

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               K++I+    P+A PSAN+   IS TN  H+      + I LI D G   IG+EST+
Sbjct: 129 NKIAKEIIKICDTPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIESTV 187


>gi|82596901|ref|XP_726453.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481870|gb|EAA18018.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 519

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 96/181 (53%), Gaps = 9/181 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + N  +   E ++    I  PTETVYGL  +S +  ++R ++++K RP  +P+I HV 
Sbjct: 11  IKNDNVKKMLKEHIEKNNLIGFPTETVYGLGGNSLSEISLRNIFKMKNRPISDPIISHVY 70

Query: 66  DISMVKK---HASV-DPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           DI+       H ++ +   +++  + F PGPL+++    +   +  + TA+ +    R+P
Sbjct: 71  DIAQAFDQLYHINIYEKYIIYILTMNFSPGPLSIIAK--AKKHLPLILTAHTQFCAVRIP 128

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                +K+I+    P+A PSAN+   IS TN  H+      + I LI D G   IG+EST
Sbjct: 129 NNKIARKIIKICNTPIAAPSANKFQHISPTNSLHVYDEFKDENI-LIFDDGQCDIGIEST 187

Query: 180 I 180
           +
Sbjct: 188 V 188


>gi|30909242|gb|AAP37053.1| ischemia/reperfusion inducible protein transcript variant 1 [Homo
           sapiens]
 gi|30909244|gb|AAP37054.1| ischemia/reperfusion inducible protein transcript variant 2 [Homo
           sapiens]
 gi|114325461|gb|AAH68057.1| YRDC protein [Homo sapiens]
          Length = 270

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 58  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 117

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 118 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 172

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG        L 
Sbjct: 173 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 228

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229
           ST+V++    K  I+RPG                 C  E++T    Q  G+L SH
Sbjct: 229 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 266


>gi|116511390|ref|YP_808606.1| translation factor SUA5 [Lactococcus lactis subsp. cremoris SK11]
 gi|116107044|gb|ABJ72184.1| translation factor SUA5 [Lactococcus lactis subsp. cremoris SK11]
          Length = 306

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 109/197 (55%), Gaps = 15/197 (7%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L  G  + +PTETVYGL  D+ N  A+++LY +K RP    L  +VS    + K+
Sbjct: 111 RAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILKY 170

Query: 74  ASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            S++P   +L K+   F PGPLT++L+  +++++         T  FR+P    T+K+I+
Sbjct: 171 -SINPPD-YLGKIVDAFLPGPLTIILE--ASSEVPEWIHIGKSTVGFRMPNIAVTQKVIK 226

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNVQCEKK 188
             G  L  PSAN +G  S +     LS  I +   + + D  I   GL++TI+++  EK 
Sbjct: 227 EVG-VLVGPSANLTGSKSPSFFAD-LSQEILENAAVAVQDDNI--YGLDTTIIDLTQEKP 282

Query: 189 VRILRPGGL-EIETLKR 204
            ++LR G + + E LK+
Sbjct: 283 -KLLRQGAVTKAELLKK 298


>gi|290580479|ref|YP_003484871.1| hypothetical protein SmuNN2025_0953 [Streptococcus mutans NN2025]
 gi|254997378|dbj|BAH87979.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 196

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68
           + K  E L  G  + +PTETVYGL   + +  A+  +Y +KKRP   AMN  +  + DI 
Sbjct: 1   MDKIEEALREGQAVVLPTETVYGLFAQALSKRAVDNVYALKKRPREKAMNLNVASLEDIL 60

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              K A   P  L  L K F PGPLT+VL   +   +       L T  FRVP    T  
Sbjct: 61  AFSKEA---PAYLAELYKAFLPGPLTIVLK--ANEKVPAWINGGLSTVGFRVPAHPQTLA 115

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            I+  G PL  PSAN SGQ S    + I  +   + + +  D  I   G +STI+++   
Sbjct: 116 YIKQTG-PLIGPSANLSGQASGLVYREIQEAFANRLLGIQDDKAIK--GRDSTILDI-SS 171

Query: 187 KKVRILRPGGLEIETLK 203
            + +ILR G L  + ++
Sbjct: 172 SRAKILRQGALTQDAIQ 188


>gi|303232598|ref|ZP_07319284.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Atopobium vaginae PB189-T1-4]
 gi|302481385|gb|EFL44459.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Atopobium vaginae PB189-T1-4]
          Length = 546

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 98/207 (47%), Gaps = 8/207 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           D   +++AC+ L     I +PT++VYG+  A    NP  +RR ++IK R     L   V+
Sbjct: 344 DPAVVKRACDCLANQGVIIVPTDSVYGIGCAATKDNP-GLRRTFDIKHRDYAQTLPWLVA 402

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D S +  +   V   +  LA  FWPG LTLV+       +     A   T   R+P    
Sbjct: 403 DASALDTYGIDVPTWAYALAHEFWPGALTLVVKANDKVGVE-YQHAATHTIALRLPNSEV 461

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + L    G PLAI SAN  G  +  +   I    +  E+ L +D G + IG  STIV+ 
Sbjct: 462 VRALARGCGCPLAITSANTHGSSAAVSGDTI-EPRLLDEVDLALDAGSAPIGTASTIVDC 520

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL 210
             E+  ++LR G +  E + R +S  L
Sbjct: 521 THEEP-KLLRVGAISPEDIYRVVSSAL 546


>gi|307703896|ref|ZP_07640837.1| yrdC domain protein [Streptococcus oralis ATCC 35037]
 gi|307622731|gb|EFO01727.1| yrdC domain protein [Streptococcus oralis ATCC 35037]
          Length = 199

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  +  + DI    K+  
Sbjct: 8   LEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVAFLEDILHFSKNQ- 66

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G 
Sbjct: 67  --PTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG- 121

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  + KV+ILR
Sbjct: 122 PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILR 178

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 179 QGAIKREDI 187


>gi|293365354|ref|ZP_06612071.1| Sua5/YciO/YrdC family protein [Streptococcus oralis ATCC 35037]
 gi|322374349|ref|ZP_08048863.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C300]
 gi|291316804|gb|EFE57240.1| Sua5/YciO/YrdC family protein [Streptococcus oralis ATCC 35037]
 gi|321279849|gb|EFX56888.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C300]
          Length = 200

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  +  + DI    K+  
Sbjct: 9   LEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVAFLEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G 
Sbjct: 68  --PTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|73909159|gb|AAH67857.2| YRDC protein [Homo sapiens]
          Length = 278

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 66  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 125

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 126 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 180

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG        L 
Sbjct: 181 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 236

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229
           ST+V++    K  I+RPG                 C  E++T    Q  G+L SH
Sbjct: 237 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 274


>gi|55586836|ref|XP_513328.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Pan
           troglodytes]
          Length = 279

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 67  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 126

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 127 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 181

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG        L 
Sbjct: 182 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 237

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229
           ST+V++    K  I+RPG                 C  E++T    Q  G+L SH
Sbjct: 238 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 275


>gi|218461290|ref|ZP_03501381.1| translation factor sua5 protein [Rhizobium etli Kim 5]
          Length = 91

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/76 (63%), Positives = 55/76 (72%)

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EALI FG   +    +A I L+LS  G L EAA NLF+YMK AD SG SSIAFS IP+ G
Sbjct: 2   EALIAFGGAAVAGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIPDDG 61

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL+RAAAPR
Sbjct: 62  LGEAINDRLQRAAAPR 77


>gi|332248384|ref|XP_003273344.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
           [Nomascus leucogenys]
          Length = 270

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 58  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 117

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 118 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 172

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG        L 
Sbjct: 173 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 228

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229
           ST+V++    K  I+RPG                 C  E++T    Q  G+L SH
Sbjct: 229 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 266


>gi|58761510|ref|NP_078916.3| yrdC domain-containing protein, mitochondrial precursor [Homo
           sapiens]
 gi|74750410|sp|Q86U90|YRDC_HUMAN RecName: Full=YrdC domain-containing protein, mitochondrial;
           AltName: Full=Dopamine receptor-interacting protein 3;
           AltName: Full=Ischemia/reperfusion-inducible protein
           homolog; Short=hIRIP; Flags: Precursor
 gi|30691316|gb|AAO41711.1| YRDC protein [Homo sapiens]
 gi|55666462|emb|CAH70083.1| yrdC domain containing (E. coli) [Homo sapiens]
 gi|66840171|gb|AAH80186.2| YrdC domain containing (E. coli) [Homo sapiens]
 gi|119627722|gb|EAX07317.1| yrdC domain containing (E. coli), isoform CRA_a [Homo sapiens]
          Length = 279

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 40/235 (17%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 67  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 126

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 127 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 181

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG        L 
Sbjct: 182 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 237

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229
           ST+V++    K  I+RPG                 C  E++T    Q  G+L SH
Sbjct: 238 STVVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 275


>gi|114325403|gb|AAH08984.3| YRDC protein [Homo sapiens]
          Length = 292

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 80  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 139

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 140 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 194

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG        L 
Sbjct: 195 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 250

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+RPG
Sbjct: 251 STVVDLSVPGKFGIIRPG 268


>gi|307709437|ref|ZP_07645894.1| yrdC domain protein [Streptococcus mitis SK564]
 gi|307619751|gb|EFN98870.1| yrdC domain protein [Streptococcus mitis SK564]
          Length = 199

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  ++  +  +   +   P
Sbjct: 8   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIDSLEDILHFSKNQP 67

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G PL 
Sbjct: 68  TYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRVTG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SGQ S    + IL       + L  D  ++  G +STI+++  + KV+ILR G 
Sbjct: 125 GPSANISGQSSGVTFEQILKDFDQDVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 181

Query: 197 LEIETL 202
           ++ E +
Sbjct: 182 IKREDI 187


>gi|125623427|ref|YP_001031910.1| putative translation factor [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492235|emb|CAL97164.1| putative translation factor [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070174|gb|ADJ59574.1| putative translation factor [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 306

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 104/194 (53%), Gaps = 9/194 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L  G  + +PTETVYGL  D+ N  A+++LY +K RP    L  +VS    + K+
Sbjct: 111 RAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILKY 170

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           +   P  L  +   F PGPLT++L+  +++++         T  FR+P    T+K+I+  
Sbjct: 171 SINTPDYLRKIVDAFLPGPLTIILE--ASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKEV 228

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G  L  PSAN +G  S +     LS  I +   + +    S  GL++TI+++  EK  ++
Sbjct: 229 G-VLVGPSANLTGSKSPSFFAD-LSPEILENAAVAVQDD-SIYGLDTTIIDLTQEKP-KL 284

Query: 192 LRPGGL-EIETLKR 204
           LR G + + E LK+
Sbjct: 285 LRQGAVTKAELLKK 298


>gi|183603392|ref|ZP_02711993.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569699|gb|EDT90227.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC1087-00]
          Length = 200

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 99/189 (52%), Gaps = 14/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHAS 75
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP   A+N  I    DI    K+  
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHFSKNQ- 67

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             P  L  L + F PG LT++L+  +   +     ++L T  FR+P    T  LI   G 
Sbjct: 68  --PTYLQKLVETFLPGSLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRETG- 122

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  + KV+ILR
Sbjct: 123 PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGD-KVKILR 179

Query: 194 PGGLEIETL 202
            G ++ E +
Sbjct: 180 QGAIKREDI 188


>gi|124027648|ref|YP_001012968.1| hypothetical protein Hbut_0770 [Hyperthermus butylicus DSM 5456]
 gi|123978342|gb|ABM80623.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
          Length = 214

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 100/201 (49%), Gaps = 5/201 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   +  G  +  PT+TVYGL  +  +  A+ R++  K+RP+  P+   VS +   +
Sbjct: 17  IRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERPSNRPIPVLVSSLRAAE 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           K A +D  +  LA+ FWPGPLT+V+   +   +  L  A       RVP      K IE 
Sbjct: 77  KIAELDDRARRLAERFWPGPLTIVVP--AKPGLPSLLHAGTGRIGVRVPNHPIALKFIEA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  +   SAN   + S   V+  +    C+ + + +DGG +  G  ST+V++   K  R
Sbjct: 135 VGGAITGTSANLHRKPSPCTVQEAMKQLGCR-VDIYLDGGPTPGGTPSTVVDLTTPKP-R 192

Query: 191 ILRPGGLEIETLKRAISVELE 211
           ++R G +  E ++  ++  +E
Sbjct: 193 LVRRGPIPPEEIEAVLATPIE 213


>gi|33339163|gb|AAQ14263.1|AF250397_1 dopamine receptor interacting protein 3 [Homo sapiens]
          Length = 223

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 11  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 71  DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG        L 
Sbjct: 126 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 181

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+RPG
Sbjct: 182 STVVDLSVPGKFGIIRPG 199


>gi|306831309|ref|ZP_07464469.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426545|gb|EFM29657.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 199

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 22/188 (11%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  + +PTETVYGL   + N  A+  +Y++K+RP    +  +V+D   +   +   P
Sbjct: 8   LQNGGAVILPTETVYGLFAQAMNENAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
             L  L   F PGPLT++L   +   +     + L T  FR+P    T KLI+  G PL 
Sbjct: 68  SYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHSQTLKLIKKAG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKV 189
            PSAN SGQ          S  + KEI     G ++         G++STI+++   K  
Sbjct: 125 GPSANISGQ---------ESGKVFKEIQKQFGGTVTGFADDAALTGVDSTILDL-SGKTA 174

Query: 190 RILRPGGL 197
           RILR G +
Sbjct: 175 RILRQGAI 182


>gi|297570958|ref|YP_003696732.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931305|gb|ADH92113.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 215

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 5/211 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++S TD+ A     + + AG  + +PT+TVYG+  D  +  A+  L   K R    P 
Sbjct: 1   MVVVSSTDTQARTAVQKAVRAGKVVCLPTDTVYGVGADPFSYDAVTALLAAKSRTRAMPP 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
              V+ I   +  A   P S   L + FWPG LT++L    T       T    T   R+
Sbjct: 61  PVLVASIEQAESLAETVPASARALMEEFWPGALTIILPARETLGWDLGET--FGTVALRM 118

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P     +    +  PLA+ SAN++GQ   T +     + + + + + +DGG S  G+ S+
Sbjct: 119 PDDSATRDFLAHIGPLAVTSANKTGQPPATTIADA-ETQLGESVAVYVDGGTSPGGVPSS 177

Query: 180 IVNVQ-CEKKVRILRPGGLEIETLKRAISVE 209
           IV          ++R G L I  L R + +E
Sbjct: 178 IVRWHPATDTYDVVRLGALSIADLSRIVRIE 208


>gi|325958344|ref|YP_004289810.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21]
 gi|325329776|gb|ADZ08838.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21]
          Length = 204

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 11/200 (5%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+I+ I + N     + +A E+L  G  +  PT+TVYG+A ++ N +A+ ++++ KKR  
Sbjct: 1   MKILKINNKNPDPDTITQAKEYLKQGKIVVYPTDTVYGIAANAYNESAVSKVFDTKKRLK 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
              +   +++I  +   A +D  +  L +  +PGP T++  +     I PL T       
Sbjct: 61  TKAVSLCLAEIEAINDVAFMDNKTEILVEQLFPGPFTVI--MRKKEQISPLLTGGTNKIG 118

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P    ++ L   +  P+   SAN SG +++      +   +   + L++D G+ K G
Sbjct: 119 IRIPDNKLSRDLASEF--PITSTSANISG-LNVPETPKEVVEQLGDSVDLVLDAGVCKYG 175

Query: 176 LESTIVNVQCEKKVRILRPG 195
             ST+V++  +K + ILR G
Sbjct: 176 YHSTVVDMTGDKPI-ILRMG 194


>gi|19705289|ref|NP_602784.1| SUA5 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19713254|gb|AAL94083.1| SUA5 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 217

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 9/185 (4%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            E +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A 
Sbjct: 22  SEEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFSSPLIALLSSVDKVEEVAY 81

Query: 76  VD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           V      L   L+K+FWPG LT++L   S   I  +  +   T   R+P      K+I+ 
Sbjct: 82  VSDKNRELLKKLSKVFWPGALTVILK--SKEHIPSIMVSGGDTIGVRIPNLDLAIKIIDL 139

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +
Sbjct: 140 AGGILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGEASTIIDLTSDVP-K 197

Query: 191 ILRPG 195
           ILR G
Sbjct: 198 ILRKG 202


>gi|307354113|ref|YP_003895164.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM
           11571]
 gi|307157346|gb|ADN36726.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM
           11571]
          Length = 192

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 13/184 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PTETVYGL  D+ +  A+ RLYE K RP   P+   VSD+ M+   A +D       
Sbjct: 18  IVYPTETVYGLGCDALSDEAVSRLYEAKCRPLSKPVSIAVSDMEMLHAVAIIDEAEEKFI 77

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           K F PGP+T+++   +   I P+ T        R+P      ++IE +G P+   SAN S
Sbjct: 78  KRFLPGPVTVIVR--AKKCIPPVLTGGTGLIGIRMPDNDIAIEIIEKFGSPITSTSANLS 135

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G IS   V  +  + I      IID G +  G  ST+V++   K VR     G +IE + 
Sbjct: 136 GDISPVTVSQV--NVIYDH---IIDSG-TLPGNPSTVVDLVNRKIVR----AGAQIEEVA 185

Query: 204 RAIS 207
             I+
Sbjct: 186 SFIA 189


>gi|187250922|ref|YP_001875404.1| putative translation factor [Elusimicrobium minutum Pei191]
 gi|186971082|gb|ACC98067.1| Putative translation factor [Elusimicrobium minutum Pei191]
          Length = 210

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 9/188 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L  G  I  PT+TVYG+  D+ NP A++R+ EIK++P+  PL    SDI   K
Sbjct: 16  MLQAVNDLKNGAVIIAPTDTVYGIMADALNPQAVKRMCEIKQKPSDVPLQYLASDIKYAK 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + A   P +  LA+ +WPGPLT+++        +        T   RVP   F   L+  
Sbjct: 76  RIALFSPKATLLAEKYWPGPLTIIVPPSKEGKKY---LRGFDTLGIRVPKNDFIANLLNA 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G   A  SAN   +  + N +  L      ++  I  GG  +   ES+   V   +  +
Sbjct: 133 FGGVAAASSANLHSK-PVINSQEELIKEFNGKVDYIFTGG--QFSSESS--TVLSLEPFK 187

Query: 191 ILRPGGLE 198
           I R GG++
Sbjct: 188 IFREGGIK 195


>gi|78222805|ref|YP_384552.1| translation factor SUA5 [Geobacter metallireducens GS-15]
 gi|78194060|gb|ABB31827.1| translation factor SUA5 [Geobacter metallireducens GS-15]
          Length = 203

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 5/162 (3%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D G+ IA PT+T YG+     +   I R+Y +K+R    P     SD+S V ++A V   
Sbjct: 24  DGGI-IAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSDLSEVARYAKVSNY 82

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
           +  + K   PGP T VLD  +T+ +  L     KT   R+P       L++  GHP+   
Sbjct: 83  AYKMLKRHLPGPYTFVLD--ATSIVPDLLVTKQKTVGIRIPDNRICLSLVKELGHPIITT 140

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           SAN SG+  I +  +++  ++ K++ +++DGGI    + S +
Sbjct: 141 SANLSGEEPIGD-PYLVDLNMGKQLDVVVDGGILSADVSSVV 181


>gi|225631196|ref|ZP_03787894.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591104|gb|EEH12288.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 195

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 29/199 (14%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
            L +  PTETVY LA ++ +  +I ++Y+IKKR    PL   VSDI  + K A V    +
Sbjct: 12  NLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYI 71

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTKKLIETYGHPLAIP-- 138
            L   F PGP+  +L         PL   N L    F+   G     I    HP+AI   
Sbjct: 72  DLINHFSPGPIAYIL---------PLKNNNILPNEFFKDSIG-----IRIPEHPIAISIL 117

Query: 139 ----------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                     S N SG+ S+     I   SI + + ++I+      G+ESTI+++  E K
Sbjct: 118 NKLKVPIVATSTNISGKESVCKANDI-PQSIKQHLSVVIEDDELVSGIESTIIDL-TEDK 175

Query: 189 VRILRPGGLEIETLKRAIS 207
           +++LR G + ++T+  A S
Sbjct: 176 IKVLREGAISLQTVNNAFS 194


>gi|56972134|gb|AAH88428.1| Yrdc protein [Rattus norvegicus]
          Length = 272

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 60  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 119

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V      L  LF PGP+TLV++       D++P +         R+P   F  
Sbjct: 120 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFML 174

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +G PLA+ SAN S Q S  +V+      +   + L+IDGG   IG        L 
Sbjct: 175 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSESPECRLG 230

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+R G
Sbjct: 231 STVVDLSVPGKFGIIRSG 248


>gi|15675120|ref|NP_269294.1| hypothetical protein SPy_1143 [Streptococcus pyogenes M1 GAS]
 gi|19746090|ref|NP_607226.1| hypothetical protein spyM18_1103 [Streptococcus pyogenes MGAS8232]
 gi|71910678|ref|YP_282228.1| SUA5 protein [Streptococcus pyogenes MGAS5005]
 gi|306827353|ref|ZP_07460640.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes ATCC
           10782]
 gi|13622279|gb|AAK34015.1| hypothetical protein SPy_1143 [Streptococcus pyogenes M1 GAS]
 gi|19748262|gb|AAL97725.1| hypothetical protein spyM18_1103 [Streptococcus pyogenes MGAS8232]
 gi|71853460|gb|AAZ51483.1| SUA5 protein [Streptococcus pyogenes MGAS5005]
 gi|304430500|gb|EFM33522.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes ATCC
           10782]
          Length = 196

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 8   IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 68  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR G 
Sbjct: 125 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 181

Query: 197 LEIETL 202
           +  E L
Sbjct: 182 ITKEEL 187


>gi|319936647|ref|ZP_08011060.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1]
 gi|319808204|gb|EFW04769.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1]
          Length = 200

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 101/198 (51%), Gaps = 7/198 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + + C  ++    +A PTETVYG+ V   +  A+ +L E K R     +   V+D   
Sbjct: 8   DEIEEVCNIIECNGVVAFPTETVYGVGVKFGSKIALDKLMEAKNRDYSKAITLMVADEKD 67

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           ++K+A V   +  + + F PG +TLV     T D  P+ T   +T   R+P   +   L+
Sbjct: 68  IEKYAFVSDDAKKIVQAFMPGMITLVFKKKDTVD--PIMTNGKETIGIRIPDDQYVLTLL 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+ + SAN S   + T+ K +L + +   I L++DG  +   + ST+V+V    +
Sbjct: 126 KKAG-PMLVTSANLSNHPNTTSTKEVL-NQLDGRIDLVVDGQTTD-NVASTVVDV-SRNE 181

Query: 189 VRILRPGGLEIETLKRAI 206
           ++ILR G +  E ++  +
Sbjct: 182 MKILREGKITKEDIQEVL 199


>gi|225870519|ref|YP_002746466.1| hypothetical protein SEQ_1163 [Streptococcus equi subsp. equi 4047]
 gi|225699923|emb|CAW93855.1| conserved hypothetical protein [Streptococcus equi subsp. equi
           4047]
          Length = 197

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 8/188 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E + AG  + +PTETVYGL   + N  A+  +Y +KKRP    +  +V+D   +   +  
Sbjct: 7   ETIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPRDKAMNLNVADFESILAFSKQ 66

Query: 77  DPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            P  L+ L + F PGPLT++L   + T       + LKT  FR+P    T K+I   G P
Sbjct: 67  QPAYLNKLYEAFLPGPLTIILKANAQTPYW--INSGLKTVGFRLPSHPLTAKIIRATG-P 123

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG  S      I+ +   K      D  ++  G +STI+++    KV ILR 
Sbjct: 124 LIGPSANLSGSKSGKCFNDIVKAFDGKVDGYADDAYLT--GKDSTILDLSSP-KVSILRQ 180

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 181 GAITKEQL 188


>gi|139473766|ref|YP_001128482.1| hypothetical protein SpyM50925 [Streptococcus pyogenes str.
           Manfredo]
 gi|134272013|emb|CAM30252.1| conserved hypothetical protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 196

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 8   IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 68  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR G 
Sbjct: 125 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 181

Query: 197 LEIETL 202
           +  E L
Sbjct: 182 ITKEEL 187


>gi|52548507|gb|AAU82356.1| putative translation factor [uncultured archaeon GZfos17A3]
          Length = 241

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 7/178 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + +R A   +  G  +  PTETVYGL  D+ +  A+R +Y+IK+R A  P+   VS   
Sbjct: 24  EDQIRTATAIIKHGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAATQPISIAVSSFE 83

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKK 126
           M+ + A +D   + +     PGP+T+   L    DI P + TA  +    R P      +
Sbjct: 84  MLHEVADIDSEYVEIIAELLPGPVTI---LFKKKDIVPAILTAASEVIGVRFPDNEIATR 140

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +I+  G P+   SAN SG+   T ++ + +   +  E+ +II+GG  K  + ST+V++
Sbjct: 141 IIKETG-PITATSANVSGRNPPTCIEEVEVELKLKVELGIIINGGKCKYSMPSTVVDM 197


>gi|269836450|ref|YP_003318678.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785713|gb|ACZ37856.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 216

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 95/205 (46%), Gaps = 28/205 (13%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-H 73
           A + L  G  I  PT+TVYG+A    +P A+ RLY +K RP   P+   VSD+  V +  
Sbjct: 21  AADVLARGGLIVFPTDTVYGVAAAVDHPEAVARLYHVKGRPLDRPIPVLVSDLDQVPRLT 80

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
             VDPL L L + FWPG LT+ +         P     +     RV        +    H
Sbjct: 81  GEVDPLVLDLLQRFWPGALTVAV------PAAPWLPREIVRDTGRV-------GLRMPDH 127

Query: 134 P------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           P            LA  SANRSG+   T       +++   + LIIDGG +  G+ ST++
Sbjct: 128 PLALAIIAAAGGALATTSANRSGEPE-TRTAAEADAALGDRVDLIIDGGPAPGGVPSTVL 186

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206
            V   +++ + R G L+ E + RA 
Sbjct: 187 VVDG-RRLTVTRRGALDPEEIVRAF 210


>gi|257386952|ref|YP_003176725.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM
           12286]
 gi|257169259|gb|ACV47018.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM
           12286]
          Length = 193

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 6/180 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + +D G  +  PTETVYGLA D+ +P A++R++++K R    P+   V  +    
Sbjct: 4   LDRAADAIDDGELVIYPTETVYGLAGDALDPDAVQRVFDVKGRDRSKPVSLAVPSVDAAT 63

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
            +       L   + F PGP+T++     +  +  + TA       RVP       L+E 
Sbjct: 64  DYTEPSERELAFMRAFLPGPVTVLARRRPS--VPDVLTAGRDRVGIRVPDHELALALLER 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SG+ S   V  I   S+ +   +++DGG +  G EST+V+V  ++ VR
Sbjct: 122 VA-PITSTSANVSGEQSARTVDEI-GESVREGTAVVLDGGRTP-GTESTVVDVAADEIVR 178


>gi|58617022|ref|YP_196221.1| hypothetical protein ERGA_CDS_02950 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416634|emb|CAI27747.1| Conserved hypothetical protein (putative translation factor SUA5
           family) [Ehrlichia ruminantium str. Gardel]
          Length = 199

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 10/203 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E L     I  PTETVY LA D+ +   I+++Y+IK RP   P+   +S+I  +K
Sbjct: 2   ISKAVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + +++   + ++ +   PGP+T +L + +   +      N      R+P       ++  
Sbjct: 62  QFSNLTEHTAYIIQELSPGPITFILPIHNYGKLPKQFFYN--KIGIRIPNHPIALAILNN 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           + HP+   S N SGQ   T+V  I S +I K I  IID      G  ST++++   K   
Sbjct: 120 FDHPITATSVNISGQQDATSVDQI-SDNIKKNISFIIDNNRLVHGTASTVIDLTSYK--- 175

Query: 191 ILRPGGL---EIETLKRAISVEL 210
           ILR G +   +I+ + + I++ L
Sbjct: 176 ILRKGAVTKQKIQEILKKINIIL 198


>gi|56808654|ref|ZP_00366379.1| COG0009: Putative translation factor (SUA5) [Streptococcus pyogenes
           M49 591]
 gi|209559425|ref|YP_002285897.1| Sua5/YciO/YrdC family protein [Streptococcus pyogenes NZ131]
 gi|209540626|gb|ACI61202.1| Sua5/YciO/YrdC family protein [Streptococcus pyogenes NZ131]
          Length = 196

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 8   IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 68  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR G 
Sbjct: 125 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 181

Query: 197 LEIETL 202
           +  E L
Sbjct: 182 ITKEEL 187


>gi|294784249|ref|ZP_06749544.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 3_1_27]
 gi|294488115|gb|EFG35466.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 3_1_27]
          Length = 217

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78
           G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V     
Sbjct: 28  GSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSDKNK 87

Query: 79  -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
            L   LAK FWPG LT++L       I  +  +   T   R+P      K+IE  G  LA
Sbjct: 88  NLLEKLAKAFWPGALTVILK--RKEHIPSIMVSGGDTIGVRIPNLDLAIKIIELAGGILA 145

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR G
Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKG 202


>gi|254709555|ref|ZP_05171366.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
 gi|261317083|ref|ZP_05956280.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
 gi|261296306|gb|EEX99802.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
          Length = 80

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 54/80 (67%)

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
           + P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   I
Sbjct: 1   MKPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPI 60

Query: 303 PNHGLGIAINNRLERAAAPR 322
           P  GLG AIN+RL+RAAAPR
Sbjct: 61  PLDGLGEAINDRLKRAAAPR 80


>gi|306833421|ref|ZP_07466548.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus bovis ATCC
           700338]
 gi|304424191|gb|EFM27330.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus bovis ATCC
           700338]
          Length = 199

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 22/188 (11%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  + +PTETVYGL   + N  A+  +Y++K+RP    +  +V+D   +   +   P
Sbjct: 8   LQNGGAVILPTETVYGLFAQAMNENAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L   F PGPLT++L   +   +     + L T  FR+P    T KLI+  G PL 
Sbjct: 68  SYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKV 189
            PSAN SGQ          S  + KEI     G ++         G++STI+++   K  
Sbjct: 125 GPSANISGQ---------ESGKVFKEIQKQFGGTVTGFADDAALTGVDSTILDL-SGKTA 174

Query: 190 RILRPGGL 197
           RILR G +
Sbjct: 175 RILRQGAI 182


>gi|229818488|ref|ZP_04448769.1| hypothetical protein BIFANG_03796 [Bifidobacterium angulatum DSM
           20098]
 gi|229784358|gb|EEP20472.1| hypothetical protein BIFANG_03796 [Bifidobacterium angulatum DSM
           20098]
          Length = 225

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 13/202 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMN 58
           ++ +ITD + L +A   +  G  I IPT+TVYG+A D RN  AI+R+Y+ K RP   A+ 
Sbjct: 9   EVRAITDES-LAQAAAIVRGGGVIVIPTDTVYGIACDPRNAEAIQRIYQAKHRPQFKALQ 67

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTA 115
            L+  + DI  +       PL+  LA  F PG   P+ L     +   +    T  + T 
Sbjct: 68  VLLASIDDIDSLGLDLPA-PLN-RLAAAFMPGAFSPIALARPDCTLATVRKTPTGTM-TQ 124

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       I     PLA  SANRSG  S   V+  +  ++   + L +DGG +   
Sbjct: 125 GVRIPNSTASLRILRATGPLAASSANRSGGESAQTVQEAV-QALGDSVDLYLDGGATPGH 183

Query: 176 LESTIVNV--QCEKKVRILRPG 195
           + ST+V         + ILR G
Sbjct: 184 VSSTVVEADPHSRDGIAILREG 205


>gi|50914207|ref|YP_060179.1| hypothetical protein M6_Spy0861 [Streptococcus pyogenes MGAS10394]
 gi|50903281|gb|AAT86996.1| Sua5 [Streptococcus pyogenes MGAS10394]
          Length = 206

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 18  IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 77

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 78  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTG-PLI 134

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR G 
Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 191

Query: 197 LEIETL 202
           +  E L
Sbjct: 192 ITKEEL 197


>gi|149023911|gb|EDL80408.1| ischemia/reperfusion inducible protein [Rattus norvegicus]
          Length = 263

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V      L  LF PGP+TLV++       D++P +         R+P   F  
Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFML 165

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +G PLA+ SAN S Q S  +V+      +   + L+IDGG   IG        L 
Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSESPECRLG 221

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+R G
Sbjct: 222 STVVDLSVPGKFGIIRSG 239


>gi|325978214|ref|YP_004287930.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178142|emb|CBZ48186.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 199

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 22/188 (11%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  + +PTETVYGL   + N  A+  +Y++K+RP    +  +V+D   +   +   P
Sbjct: 8   LQNGGAVILPTETVYGLFAQAMNEKAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L   F PGPLT++L   +   +     + L T  FR+P    T KLI+  G PL 
Sbjct: 68  SYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKV 189
            PSAN SGQ          S  + KEI     G ++         G++STI+++   K  
Sbjct: 125 GPSANISGQ---------ESGKVFKEIQKQFGGTVTGFADDAALTGVDSTILDL-SGKTA 174

Query: 190 RILRPGGL 197
           RILR G +
Sbjct: 175 RILRQGAI 182


>gi|296328533|ref|ZP_06871052.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154342|gb|EFG95141.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 217

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 93/185 (50%), Gaps = 9/185 (4%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            E +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A 
Sbjct: 22  SEEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFSSPLIALLSSVDKVEEVAY 81

Query: 76  VD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           V      L   L+K FWPG LT++L   S   I  +  +   T   R+P      K+I+ 
Sbjct: 82  VSDKNRELLKKLSKAFWPGALTVILK--SKEHIPSIMVSGGDTIGVRIPNLDLAIKIIDL 139

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +
Sbjct: 140 AGGILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGEASTIIDLTSDVP-K 197

Query: 191 ILRPG 195
           ILR G
Sbjct: 198 ILRKG 202


>gi|71903504|ref|YP_280307.1| SUA5 protein [Streptococcus pyogenes MGAS6180]
 gi|71802599|gb|AAX71952.1| SUA5 protein [Streptococcus pyogenes MGAS6180]
          Length = 206

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 18  IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 77

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 78  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTG-PLI 134

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR G 
Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 191

Query: 197 LEIETL 202
           +  E L
Sbjct: 192 ITKEEL 197


>gi|76781474|ref|NP_783194.2| yrdC domain-containing protein, mitochondrial precursor [Rattus
           norvegicus]
 gi|123781639|sp|Q499R4|YRDC_RAT RecName: Full=YrdC domain-containing protein, mitochondrial;
           AltName: Full=Ischemia/reperfusion-inducible protein
           homolog; Flags: Precursor
 gi|71681008|gb|AAH99797.1| YrdC domain containing (E.coli) [Rattus norvegicus]
          Length = 280

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 68  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 127

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V      L  LF PGP+TLV++       D++P +         R+P   F  
Sbjct: 128 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFML 182

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +G PLA+ SAN S Q S  +V+      +   + L+IDGG   IG        L 
Sbjct: 183 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSESPECRLG 238

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+R G
Sbjct: 239 STVVDLSVPGKFGIIRSG 256


>gi|94990488|ref|YP_598588.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS10270]
 gi|94543996|gb|ABF34044.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS10270]
          Length = 206

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 18  IESGDALVLPTETVYGLFAKALDEKAVNTVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 77

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 78  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTG-PLI 134

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR G 
Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 191

Query: 197 LEIETL 202
           +  E L
Sbjct: 192 ITKEEL 197


>gi|311743974|ref|ZP_07717780.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM
           15272]
 gi|311313104|gb|EFQ83015.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM
           15272]
          Length = 216

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 21/187 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           + +PT+TVYG+A +S +P+A+ RL   K R    P    V   + ++  A+  P  L HL
Sbjct: 29  VVVPTDTVYGIAANSFSPSAVARLLAAKGRGRDMPPPVLVGAPTTIEALATDIPSWLRHL 88

Query: 84  AKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
               WPGPLT+V         DL  T D          T   R+P       +     PL
Sbjct: 89  IGRHWPGPLTVVCRQQPSLTWDLGDTHD----------TVAVRMPDDPVALAVLRDSGPL 138

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A+ SAN +G  + T V+      +   + + +DGG S+ G  STI++V      RILR G
Sbjct: 139 AVSSANTTGAPAATTVEQA-EEMLGDSVAVYLDGGPSRGGTPSTILDVTAHTP-RILRAG 196

Query: 196 GLEIETL 202
            +++ETL
Sbjct: 197 AIDLETL 203


>gi|212703472|ref|ZP_03311600.1| hypothetical protein DESPIG_01516 [Desulfovibrio piger ATCC 29098]
 gi|212673086|gb|EEB33569.1| hypothetical protein DESPIG_01516 [Desulfovibrio piger ATCC 29098]
          Length = 222

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 11/207 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S A   A    D G+ +A PTET YGL   +    A+ R+Y+ K+RP   PL      + 
Sbjct: 10  STAEDAARRLRDGGV-LAFPTETFYGLGCCADQAVAVARVYQAKRRPVHMPLPLLAGSLE 68

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLD--LLSTTDIHPLSTANL----KTACFRVPCG 122
           +++ + +++     L   FWPGPLT+VL   L       PL+   +    K A    P  
Sbjct: 69  LLRPYVTLEQAPEALLTAFWPGPLTVVLTARLTPLEGRRPLAPQLVNPRGKAAVRLTPHP 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNV----KHILSSSICKEIPLIIDGGISKIGLES 178
              +L    G PL   SAN SGQ +        + +L++    +  +++ G     G+ S
Sbjct: 129 LAARLSCLAGEPLTASSANISGQAAARVPDELDERLLAALTGPDDGVVVSGPAPAGGVPS 188

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRA 205
           TIV       +R+LR G + +E L+ A
Sbjct: 189 TIVEPLAGTDLRVLRLGAVSLEALRAA 215


>gi|39996696|ref|NP_952647.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sulfurreducens PCA]
 gi|39983577|gb|AAR34970.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sulfurreducens PCA]
 gi|298505707|gb|ADI84430.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter
           sulfurreducens KN400]
          Length = 203

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 4/155 (2%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  IA PT+T YG+     +   I R+Y +K+R    P     S++S V ++A V
Sbjct: 20  EVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKV 79

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
              +  + K + PGP T V+D  +T+ +  L     KT   R+P       L++  GHP+
Sbjct: 80  SNYAYKILKRYLPGPYTFVID--ATSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPI 137

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
              SAN SG+  I +   +   ++ K++ L++DGG
Sbjct: 138 VTTSANLSGEEPIGDPLEV-ERTLGKQLDLVVDGG 171


>gi|167718307|ref|ZP_02401543.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
          DM98]
          Length = 141

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 11 AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70

Query: 69 MVKKHASVDPLSL-HLAKLFWPGPLTLVL 96
                   P     L   FWPGPLTL+L
Sbjct: 71 DPGYWVEALPADAKKLIDAFWPGPLTLIL 99


>gi|21910337|ref|NP_664605.1| hypothetical protein SpyM3_0801 [Streptococcus pyogenes MGAS315]
 gi|28895912|ref|NP_802262.1| hypothetical protein SPs1000 [Streptococcus pyogenes SSI-1]
 gi|21904533|gb|AAM79408.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28811162|dbj|BAC64095.1| hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 196

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 8   IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 68  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPNHPITAALIQKTG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR G 
Sbjct: 125 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 181

Query: 197 LEIETL 202
           +  E L
Sbjct: 182 ITKEEL 187


>gi|156548558|ref|XP_001605728.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 266

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G  +A+PT+T+YGLA  ++N  ++ RLYEIKKR    PL   + D+  ++  A
Sbjct: 35  AAELLRNGKIVAMPTDTIYGLAGLAQNDASVARLYEIKKRDESKPLAICLWDVDDIENWA 94

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
            V+ L   L +   PGP TLVL   S+  ++P     ++    R+P   F + +++    
Sbjct: 95  HVEDLPDGLLQALLPGPTTLVLKRKSS--LNPHLNPGVENVGIRIPKYDFIRSVVKMLNQ 152

Query: 134 PLAIPSANRS 143
           P+A+ SAN S
Sbjct: 153 PIALTSANES 162


>gi|308272719|emb|CBX29323.1| hypothetical protein N47_J03040 [uncultured Desulfobacterium sp.]
          Length = 253

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 26/216 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---------- 61
           ++KA   + +G  +  P   +YGLA D+ N TA+++++EIK R    PL+          
Sbjct: 45  IKKAASVIRSGGVVVFPARCLYGLAADAFNETAVQKVFEIKGRTEKKPLLVLADSHLMIS 104

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           C V DI+         P++  + K FWPG +T++L+  + +    L+    K    +   
Sbjct: 105 CIVKDIT---------PMAQKIMKSFWPGLVTIILE-ANDSLCDNLTAGTGKIGVRKPGH 154

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L++  G P+   SAN SG     ++  I    I +++ LI+D G  K G  ST+V
Sbjct: 155 PVALALVKAVGGPVTGTSANPSGASGCYDITDI-DPEIAEKVDLILDAGTLKGGTGSTVV 213

Query: 182 NVQCEKKVRILRPG---GLEIETLKRAISV-ELEYC 213
           +V  E  V I+R G   G EI     A +V E  +C
Sbjct: 214 DVTGEVPV-IIREGEVSGNEILAASGASAVYETSFC 248


>gi|108757718|ref|YP_632028.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
 gi|108461598|gb|ABF86783.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
          Length = 203

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+ G  +A PT+T +GL  D  +   I RLY++K R    PL     D+S V 
Sbjct: 18  IQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLSDVA 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           ++A V   +    K   PG  T +L+  +T  +  L  +  K    RVP     ++L   
Sbjct: 78  RYAHVSNFAYRTMKSLTPGAFTFILE--ATRLVPDLMMSKQKQVGIRVPDSALVRELTRA 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   SA  +    +T+ K I  + +   + LI+DGG++ +   ST++++  +  + 
Sbjct: 136 LGRPLVTTSATNTEGEPLTDAKDI-KADLGHGLDLILDGGVT-LNEPSTVISLIGD-SLE 192

Query: 191 ILRPGGLEIE 200
           ILR G   +E
Sbjct: 193 ILRQGKGRLE 202


>gi|152965228|ref|YP_001361012.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359745|gb|ABS02748.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans
           SRS30216]
          Length = 241

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 18/207 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           + +PT+TVYG+  D+ NP A++RL E K R    P    V +   +   AS  P ++  L
Sbjct: 30  VVLPTDTVYGIGADAFNPAAVKRLLEAKGRGRDMPPPVLVPETRTIDGLASSIPFAVREL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIETYGHPLAIP 138
              FWPG LT+V          P  T +L     T   R+P      +L+   G P+A+ 
Sbjct: 90  IDAFWPGALTIV------CRAQPSLTWDLGETNGTVALRMPLHPVALELLRRTG-PMAVS 142

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ + T V   +   + + + + +DGG S  G  STIV+   +  +R+LR G + 
Sbjct: 143 SANLSGRPAATVVGEAV-EQLGESVRVYLDGGPSTKGAPSTIVDAS-DGPLRVLRVGAIS 200

Query: 199 IETLKRAIS---VELEYCVDETSTPQS 222
              L+ A+    VELE    E  T ++
Sbjct: 201 EAELRAAVPAGWVELEEPAVEEPTAEA 227


>gi|256846908|ref|ZP_05552362.1| SUA5 family protein [Fusobacterium sp. 3_1_36A2]
 gi|256717706|gb|EEU31265.1| SUA5 family protein [Fusobacterium sp. 3_1_36A2]
          Length = 217

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78
           G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V     
Sbjct: 28  GSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSDKNK 87

Query: 79  -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
            L   LAK FWPG LT++L       I  +  +   T   R+P      K+IE  G  LA
Sbjct: 88  NLLEKLAKAFWPGALTVILK--RKEHIPSIIVSGGDTIGVRIPNLDLAIKIIELAGGILA 145

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR G
Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKG 202


>gi|308480641|ref|XP_003102527.1| hypothetical protein CRE_04025 [Caenorhabditis remanei]
 gi|308261259|gb|EFP05212.1| hypothetical protein CRE_04025 [Caenorhabditis remanei]
          Length = 215

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 105/199 (52%), Gaps = 18/199 (9%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHASV 76
           FL  G+ +A+PT+T+YG++  +  P +  RLY +K+RP   PL I   S  SM  K  S 
Sbjct: 25  FLRGGI-VALPTDTLYGIS--TLLPFS-DRLYALKQRPFEKPLGIFLPSPTSM--KLVSK 78

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
             +S  LA    PGP+TL+ + L     + +P     +  AC RVP C    ++    G 
Sbjct: 79  QTISDELANCLLPGPVTLMFERLPNLPDEFNP---GVVNVAC-RVPDCAIVSRICRKLGQ 134

Query: 134 PLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRI 191
           PLA  SAN SG  ++ T++ H    ++   I LI+D G I   G  STIV++  E   RI
Sbjct: 135 PLAQTSANVSGSPLNPTSIDHF--KNLHSNIDLILDNGQIVSSGEGSTIVDLTVESCFRI 192

Query: 192 LRPGGLEIETLKRAISVEL 210
           +R G  E ET+K+  S  L
Sbjct: 193 VRSGCAESETIKKLKSFGL 211


>gi|297822817|ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325130|gb|EFH55550.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 263

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 10/193 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 77  QEAIEAIKSDKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVFDIKR 136

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A+ + L   L     PGP+TLVL    ++ +       + T   RVP C F ++++   
Sbjct: 137 VATTNHLPHGLLDSLLPGPVTLVLHRGESSILEKSLNPGIGTIGIRVPDCEFIREVLRGS 196

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G  LA+ SAN SG  S   V       + +++ L++D     +  ES  + V  +++ + 
Sbjct: 197 GSVLALTSANLSGDRSSVCVNDF--EKLWQDLQLLMD-----LKFES--LWVLSKQQWQS 247

Query: 192 LRPGGLEIETLKR 204
           LR    + +TLKR
Sbjct: 248 LRSICWKKKTLKR 260


>gi|194246572|ref|YP_002004211.1| Translation factor [Candidatus Phytoplasma mali]
 gi|193806929|emb|CAP18361.1| Translation factor [Candidatus Phytoplasma mali]
          Length = 187

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 14/193 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+T+YG+     +   I ++Y++KKR    PL    +D+S V+    ++ 
Sbjct: 1   MKKGSLIIFPTDTIYGIGAKINDNEGINKIYKLKKRDFSKPLSVLFADLSQVRHLVKINS 60

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA--NLKTACFRVPCGFTKKLIETYGHPLA 136
            S  L   FWPGPLTL+   L TT  +       NL     + P     KL++ +G PL 
Sbjct: 61  TSRKLINYFWPGPLTLI---LKTTSFYKKKNKENNLGIRQPKHPLAL--KLLKKHG-PLK 114

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIGLESTIVNVQCEKKVRILR 193
             S N SG   + N K ++     K++  I    +  +SK  L ST++++Q     +ILR
Sbjct: 115 TTSVNISGFPPLNNYK-VIRQIYEKKVDYIFYSSNQNLSK--LSSTVLDLQLNNNFKILR 171

Query: 194 PGGLEIETLKRAI 206
            G +  E + + I
Sbjct: 172 EGSITKEMIYKVI 184


>gi|328951772|ref|YP_004369106.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452096|gb|AEB07925.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 202

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+  + L AG  IA PT+T YG+  D  N  AI ++Y+ KKRP   P     +D+  + 
Sbjct: 15  LRRVVQVLTAGGIIAYPTDTCYGIGCDLFNKKAIEKIYQFKKRPLTKPFSFICADLKHIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           ++A V   +    +   PGP T +L+   +  +  +     KTA  RVP       L++ 
Sbjct: 75  EYAKVSNFAYKTMRRLLPGPYTFILE--GSRLVPKIMLTRRKTAGLRVPDNAICLGLVKL 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            GHP+   SA+R    S+ +  + ++      + L+IDGG+
Sbjct: 133 LGHPIISTSASREDG-SVMSDPYDIAEYYKPPLDLVIDGGV 172


>gi|297626234|ref|YP_003687997.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921999|emb|CBL56561.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 292

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 5/193 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           I +PT+TVYG+  D+ +  A++ L   K R    P    +++ +M+    S  PL    +
Sbjct: 60  IVLPTDTVYGIGADAFSADAVQGLLNAKHRGRDMPPPVLIAEPAMLPALVSSIPLGAERM 119

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
            K  WPG LTL+L+  + T +H        T   RVP     + +  +  PLA+ SAN S
Sbjct: 120 IKECWPGALTLILN--AATALHMDLGETAGTIAVRVPDNDDARALLLHTGPLAVSSANIS 177

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           GQ S T+V   + + +   + + +DGG +   + STIV+       RILR G +  + L+
Sbjct: 178 GQPSATDVGAAI-AMLGDSVAVYLDGGRTPGPVASTIVDFTVSPAGRILRQGVIGFDQLE 236

Query: 204 RAISVELEYCVDE 216
             +S  LE  V E
Sbjct: 237 -GLSPGLEDLVTE 248


>gi|257464356|ref|ZP_05628733.1| SUA5 protein [Fusobacterium sp. D12]
 gi|317061861|ref|ZP_07926346.1| SUA5 protein [Fusobacterium sp. D12]
 gi|313687537|gb|EFS24372.1| SUA5 protein [Fusobacterium sp. D12]
          Length = 202

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 8/199 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E +  G  I  PT+TVYG+A   ++  A+  LY+ K R   +PLI  V  +  + +
Sbjct: 6   KEIGEQVKKGALIIYPTDTVYGIAASMQSEEALIHLYQAKSRNFSSPLIALVDSVERISE 65

Query: 73  HASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
            A +D        L+K FWPG LT++L          +S  N  T   R+P      ++I
Sbjct: 66  IAYIDNKKEELETLSKAFWPGGLTVILPAKDCVPKIMISGGN--TVGVRIPNHKMALEII 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G  L   SAN SG+ + ++ +  LS +I ++  ++IDGG+  +G  STI++   +  
Sbjct: 124 RAAGGILPTTSANISGEATPSSYQE-LSEAIKQKADIVIDGGVCPVGEASTILDF-TKDS 181

Query: 189 VRILRPGGLEIETLKRAIS 207
           ++ILR G +  E ++  I 
Sbjct: 182 LQILRLGAITKEEIEAVIG 200


>gi|218779903|ref|YP_002431221.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761287|gb|ACL03753.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 214

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 93/201 (46%), Gaps = 10/201 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+ +A   L  G  +  PT  +YGLA  + +P A+  ++ IK RP   PL+  V  I  
Sbjct: 15  EAINQAVRILKEGGVVVFPTTGLYGLAAKASDPQAVAEVFRIKGRPDDKPLLILVDSIDQ 74

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           VK      P S   L +  WPG +TLV    DLL  + +       ++ A   V     +
Sbjct: 75  VKPLVREVPESGRLLMEKLWPGGITLVFCASDLLPPSLLGGKKKIGIRMAAHPV----AR 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L++  G P+   SAN SG+    + +  LS ++ +  PL +D G    G  ST+V+V  
Sbjct: 131 ALVKGLGEPITGTSANLSGEPGAGDFRQ-LSLAVLERTPLALDAGKLAGGAGSTVVDV-T 188

Query: 186 EKKVRILRPGGLEIETLKRAI 206
           E    ILR G    E +  A+
Sbjct: 189 EDPPLILRQGAAPKEKIFNAL 209


>gi|312278144|gb|ADQ62801.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus thermophilus
           ND03]
          Length = 201

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 14/199 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISM 69
           ++  E L+ G  + +PTETVYGL   + +  A+  +YE+K RP   AMN  +    DI  
Sbjct: 6   KQLREILNNGEAVVLPTETVYGLFAKALDEKAVNYVYELKNRPRDKAMNLNVASYEDILF 65

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             K     P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++L
Sbjct: 66  YSKEQ---PKYLKQLYDAFLPGPLTIILK--ANDQVPRWINSGLATVGFRLPNHPVTREL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G PL  PSAN+SG+ S  +   I +    +      D  +  +G++STI+++    
Sbjct: 121 IQAEG-PLIGPSANKSGKESGRHFDDIRAQFDFQVTGYQDDNAL--LGVDSTILDLSV-S 176

Query: 188 KVRILRPGGLEIETLKRAI 206
             RILR G +  + L  A+
Sbjct: 177 PARILRQGKITKDDLLAAL 195


>gi|298530069|ref|ZP_07017471.1| SUA5/yciO/yrdC domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509443|gb|EFI33347.1| SUA5/yciO/yrdC domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 212

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 11/205 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M    S ++ +A + + +   +  PTET++G+     +   ++++ E+KKRP   P    
Sbjct: 1   MEFNMSGSIFQAVQIIKSEKILIYPTETLWGMGGTGTSKAVVQKIRELKKRPVHKPFPLI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLV---LDLLSTTDIHPLSTANLKTACFRV- 119
              +   +   ++DP SL LA  FWPGP++++   LD+L+     P           RV 
Sbjct: 61  AGTLEQARSFVAMDPESLELAGQFWPGPVSILCRALDMLA-----PGVRDEQGMVSIRVT 115

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLES 178
           P     +L    G PL   SAN SG+ S   V   L S + +++ ++ + G +   GL S
Sbjct: 116 PHQDAARLCLDAGTPLIATSANISGEKSCA-VFEELDSELLRKVDMVFEHGHAPAGGLPS 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           T+V V    K+ ILR G +  + L+
Sbjct: 175 TLVRVFGGGKIEILREGRISRQDLE 199


>gi|310287869|ref|YP_003939127.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum S17]
 gi|313141023|ref|ZP_07803216.1| conserved protein in the Sua5/YciO/YrdC family protein
           [Bifidobacterium bifidum NCIMB 41171]
 gi|309251805|gb|ADO53553.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum S17]
 gi|313133533|gb|EFR51150.1| conserved protein in the Sua5/YciO/YrdC family protein
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 219

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 14/215 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L +A   +  G  + IPT+TVYG+A D RN  AI R+Y++K RP    L
Sbjct: 1   MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLD--LLSTTDIHPLSTANLKT 114
              ++ +  +       P  L+ LA  F PG   P+ +  +   L+T    P      +T
Sbjct: 61  QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATPQGR---RT 117

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              RVP    T +++   G PLA  SANRSG  S   V+  +  +   ++ L +DGG ++
Sbjct: 118 QGIRVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAV-QAFGDDVQLYLDGGPTQ 175

Query: 174 IGLESTIVNVQCEKK--VRILRPGGLEIETLKRAI 206
             + ST+V     ++  + ILR G +    +++A+
Sbjct: 176 GHVASTVVAADPHERDGIVILREGVIPQPVVRKAV 210


>gi|331266422|ref|YP_004326052.1| translation factor (SUA5), putative [Streptococcus oralis Uo5]
 gi|326683094|emb|CBZ00712.1| translation factor (SUA5), putative [Streptococcus oralis Uo5]
          Length = 199

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  +   +   P
Sbjct: 8   LEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVASLEDILHFSKNQP 67

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G PL 
Sbjct: 68  TYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S      IL     + + L  D  ++  G +STI+++  + KV+ILR G 
Sbjct: 125 GPSANISGRASGVAFARILEDFDQEVLGLEDDAFLT--GQDSTILDLSGD-KVKILRQGA 181

Query: 197 LEIETL 202
           ++ E +
Sbjct: 182 IKREDI 187


>gi|94988612|ref|YP_596713.1| sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS9429]
 gi|94992436|ref|YP_600535.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS2096]
 gi|94542120|gb|ABF32169.1| sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS9429]
 gi|94545944|gb|ABF35991.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS2096]
          Length = 206

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 18  IESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILVFSKEQP 77

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 78  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTG-PLI 134

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR G 
Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQGA 191

Query: 197 LEIETL 202
           +  E L
Sbjct: 192 ITKEEL 197


>gi|322373124|ref|ZP_08047660.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C150]
 gi|321278166|gb|EFX55235.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C150]
          Length = 201

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 12/189 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHASVDP 78
           G  + +PTETVYGL   + +  A+  +YE+K RP   AMN  +    DI    K    D 
Sbjct: 15  GGAVVLPTETVYGLFARALDEKAVNHVYELKNRPRDKAMNLNVASYEDILTYSKEQP-DY 73

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
           L   L   F PGPLT++L   +   +     + L T  FR+P    T++LI+  G PL  
Sbjct: 74  LK-KLYDAFLPGPLTIILK--ANGQVPKWINSGLATVGFRLPNHPVTRELIQAEG-PLIG 129

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSAN+SG  S     HI +    +      D  +  +GL+STI+++  +   RILR G +
Sbjct: 130 PSANKSGMASGRYFDHIRAQFDFQVTGYQDDDAL--LGLDSTILDL-SDTPARILRQGKI 186

Query: 198 EIETLKRAI 206
             + L  A+
Sbjct: 187 TKDDLLAAL 195


>gi|320546678|ref|ZP_08040990.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equinus ATCC
           9812]
 gi|320448733|gb|EFW89464.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equinus ATCC
           9812]
          Length = 198

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 14/191 (7%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L +G  + +PTETVYGL   + N  A+  +Y++K+RP    +  +V+D   +   +  
Sbjct: 6   EILQSGGAVILPTETVYGLFAQAMNEDAVEHVYQLKRRPKEKAMNLNVADYETILAFSKN 65

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            P  L  +   F PGPLT++L   +   +     + L T  FR+P    T +LI+  G P
Sbjct: 66  QPSYLKKIYDTFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPKHPQTLELIKKTG-P 122

Query: 135 LAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           L  PSAN SG+ S     ++K    +++     L  D  ++  G++STI+++  E   RI
Sbjct: 123 LIGPSANISGKESGKIFADIKKQFGNNVTG---LSDDAALT--GVDSTILDLSGE-SARI 176

Query: 192 LRPGGLEIETL 202
           LR G +  E L
Sbjct: 177 LRQGAITKEEL 187


>gi|297665439|ref|XP_002811084.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
           [Pongo abelii]
          Length = 350

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 101/198 (51%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 138 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 197

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 198 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 252

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG        L 
Sbjct: 253 DLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLG 308

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+RPG
Sbjct: 309 STVVDLSVPGKFGIIRPG 326


>gi|197117703|ref|YP_002138130.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter
           bemidjiensis Bem]
 gi|197087063|gb|ACH38334.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter
           bemidjiensis Bem]
          Length = 202

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           K  E L  G  +A PT+T YG+     +   I R+Y++K+R    P     SDIS + ++
Sbjct: 17  KVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDISEISRY 76

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A V   +    +   PGP T VL+  S   +  L T   +T   R+P       +++  G
Sbjct: 77  ARVSNYAFKQLRRLLPGPYTFVLEANSV--VPDLVTTKQRTVGIRMPDNNICLAIVKELG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           HP+   SAN SG+  I N   +    + K + L++DGG
Sbjct: 135 HPIVTTSANLSGEDPIGNPWQV-EHELGKLLDLVVDGG 171


>gi|55820818|ref|YP_139260.1| Sua5/YciO/YrdC family protein [Streptococcus thermophilus LMG
           18311]
 gi|55736803|gb|AAV60445.1| hypothetical protein, Sua5/YciO/YrdC family protein [Streptococcus
           thermophilus LMG 18311]
          Length = 201

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 14/199 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISM 69
           ++  E L+ G  + +PTETVYGL   + +  A+  +YE+K RP   AMN  +    DI  
Sbjct: 6   KQLREILNNGEAVVLPTETVYGLFAKALDEKAVDYVYELKNRPRDKAMNLNVASYEDILF 65

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             K     P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++L
Sbjct: 66  YSKEQ---PKYLKQLYDAFLPGPLTIILK--ANDQVPRWINSGLATVGFRLPNHPVTREL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G PL  PSAN+SG+ S  +   I +    +      D  +  +G++STI+++    
Sbjct: 121 IQAEG-PLIGPSANKSGKESGRHFDDIRAQFDFQVTGYQDDNAL--LGVDSTILDLSV-S 176

Query: 188 KVRILRPGGLEIETLKRAI 206
             RILR G +  + L  A+
Sbjct: 177 PARILRQGKITKDDLLAAL 195


>gi|257052622|ref|YP_003130455.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM
           12940]
 gi|256691385|gb|ACV11722.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM
           12940]
          Length = 198

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T  + L  A E + +G  +  PTETVYGL  D+ +  AI  ++E K+R   NPL   V+
Sbjct: 1   MTRDSDLTAAAEVVKSGGLVVYPTETVYGLGADALDTAAIEAVFETKRRDRDNPLSLGVA 60

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GF 123
            +     + S         + F PGP+T+V++     D  P + T        R+P    
Sbjct: 61  SVEAALDYVSPSVTEQRFMQEFLPGPVTVVVE---GRDPVPDALTGGRDRVGVRIPDHDL 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L+E  G PL   SAN SGQ S+T+    L + I     +I+DGG +  G  ST+V+V
Sbjct: 118 ARELLERSG-PLTATSANVSGQPSVTDPAD-LDAEIRTAAGVILDGGETP-GTASTVVDV 174


>gi|212716443|ref|ZP_03324571.1| hypothetical protein BIFCAT_01367 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660696|gb|EEB21271.1| hypothetical protein BIFCAT_01367 [Bifidobacterium catenulatum DSM
           16992]
          Length = 220

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 10/214 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I +I+D + L +A E +  G  I IPT+TVYG+A D RN  AIR+++  K+RP    L 
Sbjct: 3   EIRAISDES-LAQAVEIVRDGGLIVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSLQ 61

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117
             +  I  ++K     P+ L+ L+ +F PG   P+ +  D  +   +         T   
Sbjct: 62  VLLPSIESLEKLHLDLPVPLNRLSAMFMPGAFSPIAVAGDNCTLATVRTDPATGKATQGV 121

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      +++ T G PLA  SANRSG  S   V   +  +    + L +DGG +   +
Sbjct: 122 RIPNSAAALRVLRTTG-PLAATSANRSGDESAQTVDEAV-QAFGDAVDLYLDGGATPGHV 179

Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208
            ST+V      +  + ILR G +    +++A+++
Sbjct: 180 ASTVVAADPHGRDGIAILREGVIREPVIRKALTL 213


>gi|228477561|ref|ZP_04062194.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus salivarius SK126]
 gi|228250705|gb|EEK09903.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus salivarius SK126]
          Length = 201

 Score = 76.3 bits (186), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 8/192 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  + +PTETVYGL   + + +A+  +YE+K RP    +  +V+    +  ++  
Sbjct: 10  EILADGGAVVLPTETVYGLFAKAMDESAVNHVYELKNRPRDKAMNLNVASYEDILSYSKE 69

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++LI+  G P
Sbjct: 70  QPKYLKQLYDAFLPGPLTIILK--ANDKVPRWINSGLATVGFRLPNHPVTRELIQAEG-P 126

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN+SG+ S      I +    +      D  +  +G++STI+++      +ILR 
Sbjct: 127 LIGPSANKSGEASGRYFDQIRAQFDFQVTGYQDDAAL--LGVDSTILDLSVS-PAKILRQ 183

Query: 195 GGLEIETLKRAI 206
           G +  E L  A+
Sbjct: 184 GKITKEDLLAAL 195


>gi|319947035|ref|ZP_08021269.1| Sua5/YciO/YrdC family protein [Streptococcus australis ATCC 700641]
 gi|319747083|gb|EFV99342.1| Sua5/YciO/YrdC family protein [Streptococcus australis ATCC 700641]
          Length = 203

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 13/204 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+AG  + +PTETVYGL   + +  A+ ++Y +K+RP    +  ++S    ++ ++   P
Sbjct: 8   LEAGYAVVLPTETVYGLFAKALDKAAVDQVYALKQRPREKAMNLNISSEEGIRFYSKNQP 67

Query: 79  LSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
              +L+KL   F PGPLT++L+  +   +     + + T  FR+P    T +LI   G P
Sbjct: 68  --PYLSKLIASFLPGPLTIILE--ANEKVPAWINSGMATVGFRMPAHPKTLELIHKTG-P 122

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S T  + IL       + L  D  ++  G +STI+++    K RILR 
Sbjct: 123 LIGPSANLSGKASGTQCQQILKELGHGVLGLEDDSFLT--GQDSTILDLTG-PKARILRQ 179

Query: 195 GGL-EIETLKRAISVELEYCVDET 217
           G +   E  +R   +  E   D T
Sbjct: 180 GAITRSEIFQRVPEIPFEEEEDVT 203


>gi|253701566|ref|YP_003022755.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21]
 gi|251776416|gb|ACT18997.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21]
          Length = 202

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           K  E L  G  +A PT+T YG+     +   I R+Y++K+R    P     SDIS + ++
Sbjct: 17  KVVEVLKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDISEISRY 76

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A V   +    +   PGP T VL+  S   +  L T   +T   R+P       +++  G
Sbjct: 77  ARVSNYAFKQLRRLLPGPYTFVLEANSV--VPDLVTTKQRTVGIRMPDNNICLAIVKELG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           HP+   SAN SG+  I N   +    + K + L++DGG
Sbjct: 135 HPIVTTSANLSGEDPIGNPWQV-EHELGKLLDLVVDGG 171


>gi|68063631|ref|XP_673811.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491931|emb|CAI02427.1| hypothetical protein PB300739.00.0 [Plasmodium berghei]
          Length = 496

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 9/181 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + N  +   E +     I  PTETVYGL  +S +  +++ ++++K RP  +P+I HV 
Sbjct: 11  IKNDNVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPISDPIISHVY 70

Query: 66  DISMVKK---HASV-DPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           DI+       H ++ +   +++  + F PGPL+++    +   +  + TA+ +    R+P
Sbjct: 71  DIAQAFDQLYHINMYEKYIIYILNMKFSPGPLSIIAK--AKEHLPLILTAHTQFCAVRIP 128

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K++I+    P+A PSAN+   IS TN  H+      + I LI D G   IG+EST
Sbjct: 129 NNKIAKEIIKICDTPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIEST 187

Query: 180 I 180
           +
Sbjct: 188 V 188


>gi|284032940|ref|YP_003382871.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836]
 gi|283812233|gb|ADB34072.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836]
          Length = 295

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 17/203 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A R A + ++AG  + +PT+TVYGLA D+    A++RL + K R    P    +S +  +
Sbjct: 26  AYRAAVDAIEAGDLVVLPTDTVYGLAADAFKADAVQRLLDAKGRGRDMPPPVLISVVESL 85

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLD-----LLSTTDIHPLSTANLKTACFRVPC-GF 123
              A+  P     L + FWPG LT++       +    D H        T   RVP    
Sbjct: 86  DALATDVPEAGRKLCEEFWPGALTVICHAQGSLMWDLGDTH-------GTVALRVPDHEN 138

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T++L+   G PLA+ SANRSGQ +  +V +     +   + + +DGG    G  STIV++
Sbjct: 139 TRELLSRTG-PLAVSSANRSGQPAALDV-YDAEEQLADSVAVYLDGGAVSGGEPSTIVDL 196

Query: 184 QCEKKVRILRPGGLEIETLKRAI 206
             +    ++R G L +  +++ +
Sbjct: 197 TGDVP-HVVRIGALSMAQIRKVV 218


>gi|225350880|ref|ZP_03741903.1| hypothetical protein BIFPSEUDO_02454 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158336|gb|EEG71578.1| hypothetical protein BIFPSEUDO_02454 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 238

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 10/214 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I +I+D  +L +A E +  G  I IPT+TVYG+A D RN  AIR+++  K+RP    L 
Sbjct: 21  EIRTISD-ESLAQAVEIVRDGGLIVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSLQ 79

Query: 62  CHVSDI-SMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116
             +  I SM K H  + P+ L+ L+ +F PG   P+ +  D  +   +         T  
Sbjct: 80  VLLPSIESMEKLHLDL-PVPLNRLSAMFMPGAFSPIAVADDDCTLATVRTDPATGKVTQG 138

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     PLA  SANRSG  S   V   +  ++   + L +DGG +   +
Sbjct: 139 VRIPNSTAALRVLRATGPLAATSANRSGDESAQTVDEAV-QALGDAVDLYLDGGATPGHV 197

Query: 177 ESTIVNVQCEKK--VRILRPGGLEIETLKRAISV 208
            ST+V      +  + ILR G +    +++A+++
Sbjct: 198 ASTVVAADPHGRDGIAILREGVIHEPVIRKALTL 231


>gi|311064749|ref|YP_003971474.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum
           PRL2010]
 gi|310867068|gb|ADP36437.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum
           PRL2010]
          Length = 233

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 14/215 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L +A   +  G  + IPT+TVYG+A D RN  AI R+Y++K RP    L
Sbjct: 15  MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 74

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLD--LLSTTDIHPLSTANLKT 114
              ++ +  +       P  L+ LA  F PG   P+ +  +   L+T    P      +T
Sbjct: 75  QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATP---QGRRT 131

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              RVP    T +++   G PLA  SANRSG  S   V+  +  +   ++ L +DGG ++
Sbjct: 132 QGIRVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAV-QAFGDDVQLYLDGGPTQ 189

Query: 174 IGLESTIVNVQCEKK--VRILRPGGLEIETLKRAI 206
             + ST+V     ++  + ILR G +    +++A+
Sbjct: 190 GHVASTVVAADPHERDGIVILREGVIPQPVVRKAV 224


>gi|288905238|ref|YP_003430460.1| translation factor (SUA5) [Streptococcus gallolyticus UCN34]
 gi|288731964|emb|CBI13529.1| Putative translation factor (SUA5) [Streptococcus gallolyticus
           UCN34]
          Length = 199

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 22/188 (11%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  + +PTETVYGL     N  A+  +Y++K+RP    +  +V+D   +   +   P
Sbjct: 8   LQNGGAVILPTETVYGLFAQVMNEKAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L   F PGPLT++L   +   +     + L T  FR+P    T KLI+  G PL 
Sbjct: 68  SYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKV 189
            PSAN SGQ          S  + KEI     G ++         G++STI+++   K  
Sbjct: 125 GPSANISGQ---------ESGKVFKEIQKQFGGTVTGFADDAALTGVDSTILDL-SGKTA 174

Query: 190 RILRPGGL 197
           RILR G +
Sbjct: 175 RILRQGAI 182


>gi|284992526|ref|YP_003411080.1| Sua5/YciO/YrdC/YwlC family protein [Geodermatophilus obscurus DSM
           43160]
 gi|284065771|gb|ADB76709.1| Sua5/YciO/YrdC/YwlC family protein [Geodermatophilus obscurus DSM
           43160]
          Length = 224

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 5/183 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS-MVKKHASVDPLSLHL 83
           + +PT+TVYG+A D+  P+A+  L   K R    P+   + + S +V     V P++  L
Sbjct: 41  VLMPTDTVYGVAADAFTPSAVAALLAAKNRGRTMPVPVLIGEASTLVGLVTVVPPVATAL 100

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A+ FWPG LTLVL+  S+     L  A   T   R+P     + +     PLA+ SANRS
Sbjct: 101 AEAFWPGGLTLVLEHASSLAWD-LGDAE-GTVAVRLPDDEVARDLLRRTGPLAVSSANRS 158

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+ + T     + + +     +++DGG       STIV+       R+LR G + ++ L+
Sbjct: 159 GRPAATTADEAV-AQLGVHAAVVLDGGPRAGSAASTIVDCTVPAP-RVLRVGAIPVDRLR 216

Query: 204 RAI 206
             +
Sbjct: 217 EVV 219


>gi|224283868|ref|ZP_03647190.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 229

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 14/215 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L +A   +  G  + IPT+TVYG+A D RN  AI R+Y++K RP    L
Sbjct: 11  MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 70

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLD--LLSTTDIHPLSTANLKT 114
              ++ +  +       P  L+ LA  F PG   P+ +  +   L+T    P      +T
Sbjct: 71  QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATP---QGRRT 127

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              RVP    T +++   G PLA  SANRSG  S   V+  +  +   ++ L +DGG ++
Sbjct: 128 QGIRVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAV-QAFGDDVQLYLDGGPTQ 185

Query: 174 IGLESTIVNVQCEKK--VRILRPGGLEIETLKRAI 206
             + ST+V     ++  + ILR G +    +++A+
Sbjct: 186 GHVASTVVAADPHERDGIVILREGVIPQPVVRKAV 220


>gi|30908964|gb|AAP37032.1| ischemia/reperfusion inducible protein [Mus musculus]
          Length = 263

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V      L  LF PGP+TLV++       D++P +    +    R+P   F  
Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 165

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +G PLA+ SAN S Q S  +V+      +   + L+IDGG   IG        L 
Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 221

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+RPG
Sbjct: 222 STVVDLSVPGKFGIIRPG 239


>gi|298252615|ref|ZP_06976409.1| putative translation factor SUA5 [Gardnerella vaginalis 5-1]
 gi|297532979|gb|EFH71863.1| putative translation factor SUA5 [Gardnerella vaginalis 5-1]
          Length = 210

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 19/210 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + ++ G  I +PT+TVYG+A D  N  A+ ++YE+K+RP    L   +S++  ++K  
Sbjct: 2   AAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKALQILMSEVGDLEKLG 61

Query: 75  SVDPLSLH-LAKLFWPGPLTLV------------LDLLSTTDIHPLSTANLK-TACFRVP 120
              P  L  L K F PG  + +              L  T +    + A  + T   RVP
Sbjct: 62  LYLPSPLDILGKKFLPGGYSPIARAKKDSVASNLATLCKTNETDAQNDAKTQATQGVRVP 121

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C    +++   G PLA  SANRSG  S  +V+    ++   EIPL ++ G ++  + ST
Sbjct: 122 DCPELMQILRVTG-PLAASSANRSGNESADSVEEAF-AAFGNEIPLYLNAGPTRSHVAST 179

Query: 180 IVNVQCEKK--VRILRPGGLEIETLKRAIS 207
           +V      K  + ILR G +    ++ A+S
Sbjct: 180 VVGADSSDKDGIVILREGVISESEIRNALS 209


>gi|161528935|ref|YP_001582761.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosopumilus maritimus SCM1]
 gi|160340236|gb|ABX13323.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosopumilus maritimus SCM1]
          Length = 198

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 11/198 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + KA + ++ G  +  PT+TVYG+  +  +  + +++YEIK R    P    V   
Sbjct: 6   DKEGIEKASKVIEDGGIVIFPTDTVYGIGCNPYSKESAKKVYEIKSRDFSKPFPVLVYSK 65

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---CGFT 124
            +  + A  D +S  L + FWPG LT++L L        L+ ++      RVP   C  T
Sbjct: 66  EIASQIAEFDEISEKLVEKFWPGQLTILLKLKDEKLKESLNLSD--KIALRVPNHKC--T 121

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L+E   H L   SAN SGQ S  + +  + S   +   + +DGG      ESTI+ ++
Sbjct: 122 LSLLEKC-HYLIGTSANVSGQPSFFDPQECIKS--VENYDVFVDGGTITSKGESTIIAIE 178

Query: 185 CEKKVRILRPGGLEIETL 202
            + K++I+R G L  E +
Sbjct: 179 -DGKIKIIREGSLSKEEI 195


>gi|150399931|ref|YP_001323698.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB]
 gi|150012634|gb|ABR55086.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB]
          Length = 205

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 8/179 (4%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+T+YGL+ ++ +  AI ++Y+IKKR    P+   + +   V+K+  VD  +  L   F 
Sbjct: 35  TDTLYGLSTNALDENAIEKIYKIKKRDPNKPISISLGEKYQVEKYVYVDDTARKLIDKFM 94

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PGP+T++   L   DI P           R+P     + I     PL   SAN SG++S 
Sbjct: 95  PGPITII---LKKKDILP-DILGKNDVGVRIPDNDVIRKISVV--PLTTTSANISGEVSP 148

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
             ++ +    + +++ LIID G  K  ++STI+ V  + K+ ++R G +  E + +A+ 
Sbjct: 149 IALEEV-DPKVKEKVDLIIDSGTCKHRMQSTIIKV-IDGKIELIREGKIPFEDILKALE 205


>gi|57239024|ref|YP_180160.1| hypothetical protein Erum2950 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578965|ref|YP_197177.1| hypothetical protein ERWE_CDS_03010 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161103|emb|CAH58012.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417591|emb|CAI26795.1| Conserved hypothetical protein (putative translation factor SUA5
           family) [Ehrlichia ruminantium str. Welgevonden]
          Length = 199

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 10/203 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E L     I  PTETVY LA D+ +   I+++Y+IK RP   P+   +S+I  +K
Sbjct: 2   ISKAVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + +++   + ++ +   PGP+T +L + +   +      N      R+P       ++  
Sbjct: 62  QFSNLTEHTAYIIQQLSPGPITFILPIHNYGKLPKQFFYN--KIGIRIPNHPIALAILNN 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           + HP+   S N SGQ    +V  I S +I K I  IID      G  ST++++   K   
Sbjct: 120 FDHPITATSVNISGQQDAISVDQI-SDNIKKNISFIIDNNRLVHGTASTVIDLTSYK--- 175

Query: 191 ILRPGGL---EIETLKRAISVEL 210
           ILR G +   +I+ + + I++ L
Sbjct: 176 ILRKGAVTKQKIQEILKKINIIL 198


>gi|55822721|ref|YP_141162.1| Sua5/YciO/YrdC family protein [Streptococcus thermophilus CNRZ1066]
 gi|55738706|gb|AAV62347.1| hypothetical protein, Sua5/YciO/YrdC family protein [Streptococcus
           thermophilus CNRZ1066]
          Length = 201

 Score = 75.5 bits (184), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 14/199 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISM 69
           ++  E L+ G  + +PTETVYGL   + +  A+  +YE+K RP   AMN  +    DI  
Sbjct: 6   KQLRETLNNGEAVVLPTETVYGLFAKALDEKAVDYVYELKNRPRDKAMNLNVASYEDILF 65

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             K     P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++L
Sbjct: 66  YSKEQ---PKYLKQLYDAFLPGPLTIILK--ANDQVPRWINSGLATVGFRLPNHPVTREL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G PL  PSAN+SG+ S  +   I +    +      D  +  +G++STI+++    
Sbjct: 121 IQAEG-PLIGPSANKSGKESGRHFDDIRAQFDFQVTGYQDDNAL--LGVDSTILDLSV-S 176

Query: 188 KVRILRPGGLEIETLKRAI 206
             RILR G +  + L  A+
Sbjct: 177 PARILRQGKITKDDLLAAL 195


>gi|308235422|ref|ZP_07666159.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC
           14018]
 gi|311114829|ref|YP_003986050.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC
           14019]
 gi|310946323|gb|ADP39027.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC
           14019]
          Length = 220

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 19/218 (8%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AM 57
           M  +   +  +L+ A + ++AG  I +PT+TVYG+A D  N  A+ ++Y++K+RP   A+
Sbjct: 1   MSKICTINEESLQLAAQIINAGGVIVVPTDTVYGVACDPFNEDAVAKIYQLKRRPRTKAL 60

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLK- 113
             L+  VSD+  +  +   +PL + LA+ F PG   P+         T +  L  A+   
Sbjct: 61  QILMSSVSDLEKLGLYLP-NPLDV-LAEKFLPGGYSPIARAKKDSVATRLATLCKADESS 118

Query: 114 -----TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                T   RVP C    +++   G PLA  SANRSG  S  + +  + ++   EIPL +
Sbjct: 119 EKCEATQGVRVPDCPELMQILRVTG-PLAASSANRSGNESADSAEEAV-AAFGYEIPLYL 176

Query: 168 DGGISKIGLESTIVNVQCEKK--VRILRPGGLEIETLK 203
           + G ++  + ST+V      K  + ILR G +  E ++
Sbjct: 177 NAGPTRSHVASTVVGADASDKDGIVILREGVISEEQIR 214


>gi|254302246|ref|ZP_04969604.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322438|gb|EDK87688.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 217

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD---- 77
           G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V     
Sbjct: 28  GSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFTSPLIALLSSVDKVEEVAYVSDKNK 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
            L   LAK FWPG LT++L       I  +  +   T   R+P      K+I+  G  LA
Sbjct: 88  ELLDKLAKAFWPGALTVILK--RKEHIPSIMVSGGDTIGVRIPNLDLAIKIIDLAGGILA 145

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR G
Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKG 202


>gi|289167968|ref|YP_003446237.1| hypothetical protein smi_1125 [Streptococcus mitis B6]
 gi|288907535|emb|CBJ22372.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 209

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +   +  +Y++K+RP    L  +++ +  +   +   P
Sbjct: 18  LENGGAVVLPTETVYGLFAKALDEKVVNHVYQLKRRPRDKALNLNIASLEDILNFSKNQP 77

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G PL 
Sbjct: 78  TYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 134

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S      IL     + + L  D  ++  G +STI+++  + KV+ILR G 
Sbjct: 135 GPSANISGRASGVTFAQILEDFDQEVLGLEDDSFLT--GQDSTILDLSGD-KVKILRQGA 191

Query: 197 LEIETL 202
           ++ E +
Sbjct: 192 IKREDI 197


>gi|213691485|ref|YP_002322071.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522946|gb|ACJ51693.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 233

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 20/215 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + +TD +  + A    D GL + IPT+TVYG+A D RN  AI R+Y +K+RP    L   
Sbjct: 18  LKVTDESLAQAARVIRDGGL-VVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQVL 76

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPG---------PLTLVLDLLSTTDIHPLSTANLK 113
           ++    + + +   P  L+ L+  F PG         P   +  L  T D  P       
Sbjct: 77  LASTDQLDELSLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRP------G 130

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           T   R+P       I     PLA  SANRSG  S   V+  +  +   E+ L +DGG ++
Sbjct: 131 TQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQ 189

Query: 174 IGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
             + ST+V         + ILR G +    +++A+
Sbjct: 190 GHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 224


>gi|195978151|ref|YP_002123395.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974856|gb|ACG62382.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 197

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 8/188 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E + AG  + +PTETVYGL   + N  A+  +Y +KKRP    +  +V+D   +   +  
Sbjct: 7   ETIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPCDKAMNLNVADFESILAFSKQ 66

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            P  L  L + F PGPLT++L   + T       + LKT  FR+P    T ++I   G P
Sbjct: 67  QPAYLSKLYEAFLPGPLTIILKANAKTPYW--INSGLKTVGFRLPSHPLTAEIIRATG-P 123

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG  S      I+ +   K      D  ++  G +STI+++    KV ILR 
Sbjct: 124 LIGPSANLSGSKSGKCFNDIVKAFDGKVDGYADDAYLT--GKDSTILDLSSP-KVSILRQ 180

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 181 GAITKEQL 188


>gi|239621650|ref|ZP_04664681.1| conserved protein in the Sua5/YciO/YrdC family protein
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296454708|ref|YP_003661851.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|317482071|ref|ZP_07941095.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|239515525|gb|EEQ55392.1| conserved protein in the Sua5/YciO/YrdC family protein
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296184139|gb|ADH01021.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|316916430|gb|EFV37828.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 233

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 20/215 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + +TD +  + A    D GL + IPT+TVYG+A D RN  AI R+Y +K+RP    L   
Sbjct: 18  LKVTDESLAQAARVIRDGGL-VVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQVL 76

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPG---------PLTLVLDLLSTTDIHPLSTANLK 113
           ++    + +     P  L+ L+  F PG         P   +  L  T D  P       
Sbjct: 77  LASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRP------G 130

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           T   R+P       I     PLA  SANRSG  S   V+  +  +   E+ L +DGG ++
Sbjct: 131 TQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQ 189

Query: 174 IGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
             + ST+V         + ILR G +    +++A+
Sbjct: 190 GHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 224


>gi|261338131|ref|ZP_05966015.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270276759|gb|EFA22613.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 211

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +QI+ I +  +L    + +  G  + +PT+TVYG+A +  +  AI R++ +K+RPA   L
Sbjct: 2   VQILPINE-ESLTLVADVVSRGGIVVVPTDTVYGVACNPHDEQAIARIFAVKQRPATKSL 60

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPL--STANLKTACF 117
              ++D+  + +     P  L  L + F PG  + +  ++    +  L  ++  + T   
Sbjct: 61  QILMADVQALDELGLALPTPLDRLGERFLPGAFSPIAVMVHDRGLKTLKQTSDGVLTQGV 120

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           RVP     + I     PLA  SAN+SGQ S  +V+  + ++   E+ L +DGG +   + 
Sbjct: 121 RVPDSDACRAILRVTGPLACSSANKSGQQSAHSVQEAV-AAFGDEVDLYVDGGPTVSHVA 179

Query: 178 STIVNVQCEKK--VRILRPGGLEIETLKRAI 206
           ST+V         +RI+R G L+  +++ A+
Sbjct: 180 STVVEADPNDADGIRIIREGRLDEASVRAAL 210


>gi|320457559|dbj|BAJ68180.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 224

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 20/215 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + +TD +  + A    D GL + IPT+TVYG+A D RN  AI R+Y +K+RP    L   
Sbjct: 9   LKVTDESLAQAARVIRDGGL-VVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQVL 67

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPG---------PLTLVLDLLSTTDIHPLSTANLK 113
           ++    + + +   P  L+ L+  F PG         P   +  L  T D  P       
Sbjct: 68  LASTDQLDELSLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRP------G 121

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           T   R+P       I     PLA  SANRSG  S   V+  +  +   E+ L +DGG ++
Sbjct: 122 TQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQ 180

Query: 174 IGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
             + ST+V         + ILR G +    +++A+
Sbjct: 181 GHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 215


>gi|218654185|emb|CAB55118.2| C. elegans protein Y48C3A.18a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 216

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 14/199 (7%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHA 74
           C FL  G+ +A+PT+T+YG++   +      RLY +K+RP   PL I   S  +M  K  
Sbjct: 24  CVFLRGGI-VALPTDTLYGISTLLQYSD---RLYALKQRPYEKPLGIFLPSPTAM--KLV 77

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
           S   +S  LA    PGP+TL+ + L        +   +  AC RVP C     + +  G 
Sbjct: 78  SRQTISDELANCLLPGPVTLMFERLPCLPAE-FNPGVVNVAC-RVPDCPIVSTICKKLGQ 135

Query: 134 PLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRI 191
           PLA  SAN SG  ++ T++ H     +   I LI+D G I   G  STIV++  E   RI
Sbjct: 136 PLAQTSANVSGSSLNPTSIDHF--RDLHPNIDLILDAGSIISSGEGSTIVDLTVESGFRI 193

Query: 192 LRPGGLEIETLKRAISVEL 210
           +R G  E ET+++  S  L
Sbjct: 194 VRSGCAEKETMQKLKSFGL 212


>gi|148698400|gb|EDL30347.1| yrdC domain containing (E.coli) [Mus musculus]
          Length = 263

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V      L  LF PGP+TLV++       D++P +    +    R+P   F  
Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 165

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +G PLA+ SAN S Q S  +V+      +   + L+IDGG   IG        L 
Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 221

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+RPG
Sbjct: 222 STVVDLSVPGKFGIIRPG 239


>gi|23466265|ref|NP_696868.1| Sua5/YciO/YrdC family protein [Bifidobacterium longum NCC2705]
 gi|189440759|ref|YP_001955840.1| putative translation factor [Bifidobacterium longum DJO10A]
 gi|227546618|ref|ZP_03976667.1| translation factor Sua5 [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|312134012|ref|YP_004001351.1| translation factor [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689784|ref|YP_004209518.1| hypothetical protein BLIF_1602 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691730|ref|YP_004221300.1| hypothetical protein BLLJ_1541 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23327014|gb|AAN25504.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium
           longum NCC2705]
 gi|189429194|gb|ACD99342.1| Putative translation factor [Bifidobacterium longum DJO10A]
 gi|227212935|gb|EEI80814.1| translation factor Sua5 [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|311773317|gb|ADQ02805.1| Putative translation factor [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|320456586|dbj|BAJ67208.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461120|dbj|BAJ71740.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 224

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 20/215 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + +TD +  + A    D GL + IPT+TVYG+A D RN  AI R+Y +K+RP    L   
Sbjct: 9   LKVTDESLAQAARVIRDGGL-VVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQVL 67

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPG---------PLTLVLDLLSTTDIHPLSTANLK 113
           ++    + +     P  L+ L+  F PG         P   +  L  T D  P       
Sbjct: 68  LASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRP------G 121

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           T   R+P       I     PLA  SANRSG  S   V+  +  +   E+ L +DGG ++
Sbjct: 122 TQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQ 180

Query: 174 IGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
             + ST+V         + ILR G +    +++A+
Sbjct: 181 GHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 215


>gi|315426641|dbj|BAJ48267.1| translation factor [Candidatus Caldiarchaeum subterraneum]
          Length = 194

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 6/198 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A E +  G  I  PT+TVYG+  D     A+ R+   K+R    P    VSD   + 
Sbjct: 1   MNSAAEAVKRGGVIVYPTDTVYGIGCDPFKIEAVERVIHAKRR-EKKPAPVLVSDFDQLH 59

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           + A      L  A   WPG +T+V  +    ++  L TA  KT   R+P      LI   
Sbjct: 60  EVAVPTEEELEAAIRLWPGAVTIV--MAKKPELPELVTAGEKTVGVRMPAHVVPLLIMQK 117

Query: 132 GH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            H PL   SAN S + S T +  I  SS+ +++ +++D G +   L ST+V +Q + +V 
Sbjct: 118 AHRPLVGTSANISDEPSATTIDQI-PSSVLEKVDVVVDAGRTHHLLPSTVVKIQ-DGQVV 175

Query: 191 ILRPGGLEIETLKRAISV 208
           +LR G L  E +++ I +
Sbjct: 176 VLREGVLSREEIEKRIGL 193


>gi|70945247|ref|XP_742464.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521462|emb|CAH84674.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 543

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-VKKHASVDPLSLHL 83
           I  PTETVYGL  +S +  +++ ++++K RP  +P+I HV DI+    +   ++    ++
Sbjct: 30  IGFPTETVYGLGGNSLSEISLKNIFKMKNRPVSDPIISHVYDIAQAFDQLYHINMYEKYI 89

Query: 84  AKL----FWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLIETYGHPLAI 137
             +    F PGPL+++       +  PL  TA+ +    R+P     +++I+    P+A 
Sbjct: 90  IYILNSNFSPGPLSVI---AKAKEYLPLILTAHTQFCAVRIPNNKIAREIIKICNIPIAA 146

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           PSAN+   IS TN  H+      + I LI D G   IG+EST+
Sbjct: 147 PSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIESTV 188


>gi|237743716|ref|ZP_04574197.1| SUA5 protein [Fusobacterium sp. 7_1]
 gi|256028220|ref|ZP_05442054.1| SUA5 protein [Fusobacterium sp. D11]
 gi|289766152|ref|ZP_06525530.1| SUA5 protein [Fusobacterium sp. D11]
 gi|229432747|gb|EEO42959.1| SUA5 protein [Fusobacterium sp. 7_1]
 gi|289717707|gb|EFD81719.1| SUA5 protein [Fusobacterium sp. D11]
          Length = 217

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78
           G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V     
Sbjct: 28  GSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVSDKNK 87

Query: 79  -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
            L   LAK FWPG LT++L       I  +  +   T   R+P      K+I+  G  LA
Sbjct: 88  NLLKKLAKAFWPGALTVILK--RKEHIPSIMVSGGDTIGVRIPNLDLAIKIIDLAGGILA 145

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR G
Sbjct: 146 TTSANISGEATPKSYDE-LSETIKSKVDILIDSGKCKLGEASTIIDLTSDVP-KILRKG 202


>gi|247494089|ref|NP_705794.2| yrdC domain-containing protein, mitochondrial precursor [Mus
           musculus]
 gi|123794224|sp|Q3U5F4|YRDC_MOUSE RecName: Full=YrdC domain-containing protein, mitochondrial;
           AltName: Full=Ischemia/reperfusion-inducible protein;
           Short=mIRIP; Flags: Precursor
 gi|74146564|dbj|BAE32125.1| unnamed protein product [Mus musculus]
          Length = 280

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 68  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 127

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V      L  LF PGP+TLV++       D++P +    +    R+P   F  
Sbjct: 128 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 182

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +G PLA+ SAN S Q S  +V+      +   + L+IDGG   IG        L 
Sbjct: 183 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 238

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+RPG
Sbjct: 239 STVVDLSVPGKFGIIRPG 256


>gi|23274116|gb|AAH23823.1| YrdC domain containing (E.coli) [Mus musculus]
          Length = 263

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V      L  LF PGP+TLV++       D++P +    +    R+P   F  
Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 165

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +G PLA+ SAN S Q S  +V+      +   + L+IDGG   IG        L 
Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 221

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+RPG
Sbjct: 222 STVVDLSVPGKFGIIRPG 239


>gi|123243915|emb|CAM16101.1| yrdC domain containing (E.coli) [Mus musculus]
          Length = 263

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V      L  LF PGP+TLV++       D++P +    +    R+P   F  
Sbjct: 111 DVYRYCQVRVPRELLEDLF-PGPVTLVMERSEELNKDLNPFT----RLVGIRIPDHAFML 165

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LE 177
            L + +G PLA+ SAN S Q S  +V+      +   + L+IDGG   IG        L 
Sbjct: 166 DLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWPHLSLVIDGG--PIGDSQSPECRLG 221

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++    K  I+RPG
Sbjct: 222 STVVDLSVPGKFGIIRPG 239


>gi|326933011|ref|XP_003212603.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
           [Meleagris gallopavo]
          Length = 243

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 20/188 (10%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A+PT+TVYG+A  +++  A+R +Y +K R    PL   + D+  + ++  V+ 
Sbjct: 44  LQQGGLVAVPTDTVYGVACLAQDSRAVRSIYSLKGRNGTKPLAICLGDVENIYRYCHVNV 103

Query: 79  LSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
               L  L  PGP+TLVL        D++P ++        R+P   F ++L      PL
Sbjct: 104 PDELLQDLL-PGPVTLVLKRSEELNKDLNPFTS----LVGVRIPNHPFIRELARACPGPL 158

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LESTIVNVQCEK 187
           A+ SAN S Q S   V       +  ++ L++DGG   IG        L ST+V++    
Sbjct: 159 ALTSANVSSQASTLTVSEF--QDLWPQLSLVVDGG--PIGDVQSPECRLGSTVVDLSVSG 214

Query: 188 KVRILRPG 195
           K  I+RPG
Sbjct: 215 KFTIIRPG 222


>gi|225868515|ref|YP_002744463.1| hypothetical protein SZO_09360 [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701791|emb|CAW99204.1| conserved hypothetical protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 197

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           + AG  + +PTETVYGL   + N  A+  +Y +KKRP    +  +V+D   +   +   P
Sbjct: 9   IKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPRDKAMNLNVADFESILAFSKQQP 68

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L+ L + F PGPLT++L   + T       + LKT  FR+P    T ++I   G PL 
Sbjct: 69  AYLNKLYEAFLPGPLTIILKANAQTPYW--INSGLKTVGFRLPSHPLTAEIIRATG-PLI 125

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG  S      I+ +   K      D  ++  G +STI+++    KV ILR G 
Sbjct: 126 GPSANLSGSKSGKCFNDIVKAFDGKVDGYADDAYLT--GKDSTILDLSSP-KVSILRQGA 182

Query: 197 LEIETL 202
           +  E L
Sbjct: 183 ITKEQL 188


>gi|17537239|ref|NP_496826.1| hypothetical protein Y48C3A.18 [Caenorhabditis elegans]
          Length = 244

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 18/201 (8%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHA 74
           C FL  G+ +A+PT+T+YG++   +      RLY +K+RP   PL I   S  +M  K  
Sbjct: 24  CVFLRGGI-VALPTDTLYGISTLLQYS---DRLYALKQRPYEKPLGIFLPSPTAM--KLV 77

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           S   +S  LA    PGP+TL+ + L     + +P     +  AC RVP C     + +  
Sbjct: 78  SRQTISDELANCLLPGPVTLMFERLPCLPAEFNP---GVVNVAC-RVPDCPIVSTICKKL 133

Query: 132 GHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKV 189
           G PLA  SAN SG  ++ T++ H     +   I LI+D G I   G  STIV++  E   
Sbjct: 134 GQPLAQTSANVSGSSLNPTSIDHF--RDLHPNIDLILDAGSIISSGEGSTIVDLTVESGF 191

Query: 190 RILRPGGLEIETLKRAISVEL 210
           RI+R G  E ET+++  S  L
Sbjct: 192 RIVRSGCAEKETMQKLKSFGL 212


>gi|260495584|ref|ZP_05815709.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260196926|gb|EEW94448.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 217

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--- 78
           G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V     
Sbjct: 28  GSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVSDKNK 87

Query: 79  -LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
            L   LAK FWPG LT++L       I  +  +   T   R+P      K+I+  G  LA
Sbjct: 88  NLLKKLAKAFWPGALTVILK--RKEYIPSIMVSGGDTIGVRIPNLDLAIKIIDLAGGILA 145

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR G
Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGEASTIIDLTSDVP-KILRKG 202


>gi|237742936|ref|ZP_04573417.1| SUA5 protein [Fusobacterium sp. 4_1_13]
 gi|229430584|gb|EEO40796.1| SUA5 protein [Fusobacterium sp. 4_1_13]
          Length = 217

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV----D 77
           G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V     
Sbjct: 28  GSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVPDKNR 87

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
            L   LAK FWPG LT++L       I  +  +   T   R+P      K+I+  G  LA
Sbjct: 88  ELLKKLAKAFWPGALTVILK--KKKHIPSIMVSGGDTIGVRIPNFDLAIKIIDLAGGILA 145

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR G
Sbjct: 146 TTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILRKG 202


>gi|169600167|ref|XP_001793506.1| hypothetical protein SNOG_02913 [Phaeosphaeria nodorum SN15]
 gi|160705395|gb|EAT89644.2| hypothetical protein SNOG_02913 [Phaeosphaeria nodorum SN15]
          Length = 354

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 20/136 (14%)

Query: 11  ALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +L+KA  E +   +P+A PTETVYGL  D+   +A++ ++  K RPA NPLI H+  +S 
Sbjct: 41  SLKKAADELVKTDVPVAFPTETVYGLGADATRSSAVKSIFAAKGRPADNPLIVHIHSLSQ 100

Query: 70  VKK----------------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           ++                   S+  +   L + FWPGPLT++L   +++ + P  TA L 
Sbjct: 101 LRALLSGQLEEATGGTETGSDSIPTIYKPLIERFWPGPLTIILPTPTSSILAPEVTAGLP 160

Query: 114 TACFR---VPCGFTKK 126
           T   R   V  G+  K
Sbjct: 161 TFGARWENVTIGYKDK 176


>gi|76787929|ref|YP_329782.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae A909]
 gi|77405491|ref|ZP_00782583.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae H36B]
 gi|77408673|ref|ZP_00785406.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae COH1]
 gi|76562986|gb|ABA45570.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae A909]
 gi|77172721|gb|EAO75857.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae COH1]
 gi|77175888|gb|EAO78665.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae H36B]
          Length = 198

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 20/190 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHASVDPLSL 81
           + +PTETVYG+   + +  A+  +YE+KKRP   AMN  IC   D   + K++   P  L
Sbjct: 14  VIMPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNIC---DFETILKYSKNQPTYL 70

Query: 82  -HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             L   F PGPLT++L+  ++ ++     + L +  FR+P    T  +I  +G PL  PS
Sbjct: 71  KQLYDAFLPGPLTIILE--ASQEVPDWINSGLSSVGFRMPKHPVTLDMIANHG-PLIGPS 127

Query: 140 ANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           AN SG  S    + ++   +  +     L I+   +  G++STI+++  + +V+ILR G 
Sbjct: 128 ANISGCDSGRVFSEIQKQFNHQV-----LGIEDDKALTGVDSTIIDLSGD-RVKILRQGA 181

Query: 197 LEIETLKRAI 206
           +  E L   I
Sbjct: 182 ITQEVLTATI 191


>gi|289581382|ref|YP_003479848.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099]
 gi|289530935|gb|ADD05286.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099]
          Length = 196

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 10/193 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + +  G  +  PTETVYGL  D+ +P A+ R++E+K R    P+   V  +    
Sbjct: 6   LDRAADAICDGDLVVYPTETVYGLGADALDPDAVERVFEVKGRDRSKPISLAVPSVPAAF 65

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130
            +             F PGP+T++   L   ++  + TA       RVP   T   L E 
Sbjct: 66  DYVRTTERERRFMATFLPGPVTVLCQRLE--NVPDVLTAGEDRVGIRVPDQPTALALCER 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   SAN SG  S+  ++  L   + + +  ++DGG +  G EST+V+   E    
Sbjct: 124 AGTPITATSANVSGAGSVRRLEE-LDDGLRESVAAVLDGGETP-GTESTVVDPSSET--- 178

Query: 191 ILRPGGL--EIET 201
           I R G L  EIET
Sbjct: 179 IHRRGALADEIET 191


>gi|302334926|ref|YP_003800133.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Olsenella uli DSM 7084]
 gi|301318766|gb|ADK67253.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Olsenella uli DSM 7084]
          Length = 524

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 19/189 (10%)

Query: 18  FLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            LD G+ I +PT++VYG+  A    NP    R ++IK+R     L   ++D+  +++   
Sbjct: 331 LLDGGV-IVVPTDSVYGIGCAATPGNPGHA-RTFQIKRRALSQTLPWLIADVQDLERFGH 388

Query: 76  VDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-----TACFRVP-CGFTKKLI 128
             P  +  LA+ FWPG LTLV+         PL  A  +     T   R+P     +++ 
Sbjct: 389 RVPKWAYALAREFWPGALTLVV------RASPLVPAEYRRSDDGTIALRLPDSNLVREIA 442

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G PLAI SAN  G  S T+ + I    I  E+ L++DGG S +   STIV+      
Sbjct: 443 REVGAPLAITSANTHGASSATSGEGI-EGRIAGEVDLVLDGGPSPLAAASTIVDCTGADP 501

Query: 189 VRILRPGGL 197
            R+LR G +
Sbjct: 502 -RVLREGAI 509


>gi|322418699|ref|YP_004197922.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18]
 gi|320125086|gb|ADW12646.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18]
          Length = 202

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 10/161 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           K  E L  G  +A PT+T YG+     +   I R+Y+IK+R    P     SD+S + ++
Sbjct: 17  KVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQIKQRDRKKPFSFICSDMSEISRY 76

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           A V   +    +   PGP T VL+  S   +  L T   +T   RVP       +++  G
Sbjct: 77  ARVSNYAFKQLRRLLPGPYTFVLEANSV--VPDLVTTKQRTVGIRVPDNKICLAIVKELG 134

Query: 133 HPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGG 170
            P+   SAN SG+  I N   V+H L     +++ L++DGG
Sbjct: 135 APIVTTSANLSGEDPIGNPWAVEHELG----RQLDLVVDGG 171


>gi|320532875|ref|ZP_08033646.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134905|gb|EFW27082.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 256

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 26/232 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L+ ACE L AG  + +PT+TVYG+  ++ +  A+ RL   K R    P    V+D + 
Sbjct: 20  DPLQPACEHLRAGGLVILPTDTVYGIGCNAADAGAVERLLAAKGRGRQMPPPVLVADPAD 79

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +    +  P + H L + FWPG LTLVLD   T       T    T   R+P  G    L
Sbjct: 80  LTGIVAQVPEAAHTLMEAFWPGALTLVLDADETLTWDLGETGG--TLAVRMPAHGLALNL 137

Query: 128 IETYGHPLAIPSANRSGQIS--------------ITNVKHILSSS-----ICKEIPLIID 168
           +   G PLA+ SAN +G                 + +++ +   +     + +E  L++D
Sbjct: 138 LRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRDIEELTPGTGDVGAVGREDILLLD 196

Query: 169 GGISKIGLESTIVNVQC--EKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
           GG +   + STIV +     +  RILR G L    L+R + V L     E +
Sbjct: 197 GGATPGPVPSTIVTLAGAHARAPRILRQGVLARGDLERVVGVALSERTAEAA 248


>gi|38233637|ref|NP_939404.1| hypothetical protein DIP1043 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199897|emb|CAE49563.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 216

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 9/208 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMN-PLICHV 64
           T    L++A   +  G  + IPT+T+YG+  D+ + TA+ +L E K R P M  P++   
Sbjct: 12  TREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRGPDMPVPVLVGS 71

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            D +    H+  D L   L + FWPG L++V++   +   +   T    T   R+P    
Sbjct: 72  WDTARGLVHSYSDQLRT-LIEAFWPGGLSIVVEQAPSLQWNLGDTRG--TVMLRMPLHPV 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L+   G P+A+ SAN SGQ   T  +      +   + + +D G + +G  STI+++
Sbjct: 129 AIELLRETG-PMAVSSANISGQTPATTAQEA-QRQLGDNVSVYLDAGETPVGTASTIIDL 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELE 211
             +   RILR G +  E +   + V++E
Sbjct: 187 SGDHP-RILREGAISAERVAEVLEVDVE 213


>gi|256825640|ref|YP_003149600.1| Sua5/YciO/YrdC/YwlC family protein [Kytococcus sedentarius DSM
           20547]
 gi|256689033|gb|ACV06835.1| Sua5/YciO/YrdC/YwlC family protein [Kytococcus sedentarius DSM
           20547]
          Length = 440

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 5/203 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A   A E L  G  I +PT+TVYG+A D  +P  +  +   K+R A  P    V  + 
Sbjct: 16  DEAFGAATEALGEGRVIVMPTDTVYGVAADPFHPDGVPNVLAAKQRSAAMPPPVLVPSVR 75

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            V   A S+ P    L +  WPGPLT+V+    +     L   N  T   R+P       
Sbjct: 76  TVDGLATSLQPYVKTLIRELWPGPLTVVVQAQPSLQWD-LGETN-GTVALRMPDHDLALR 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + T   PLA+ SAN +GQ + T+V    ++ +   + + +DGG +     STIV+     
Sbjct: 134 LLTRTGPLAVTSANVTGQPAATSVLEA-ATQLGSAVEVYLDGGPTAGNRPSTIVDCTRPS 192

Query: 188 KVRILRPGGLEIETLKRAISVEL 210
            V ILR G L +E L+  I  ++
Sbjct: 193 PV-ILRLGALSVERLEEVIGPDV 214


>gi|257785106|ref|YP_003180323.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium parvulum DSM 20469]
 gi|257473613|gb|ACV51732.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium parvulum DSM 20469]
          Length = 216

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 8/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           D++ +  A E    G  + +PT++VYG+  A   +NP   +R++EIK+RP    L   V 
Sbjct: 13  DASVVSLAVEVARRGGVLIMPTDSVYGIGAAATPQNP-GHKRIFEIKQRPVEQTLPWLVG 71

Query: 66  DISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             S ++K+A +    +  L + +WPG LTLV++         +   N +T   R+P    
Sbjct: 72  SKSDLQKYAHITHDWANKLVEAYWPGALTLVVNASENVPEEYVLPDN-RTIALRMPNSPL 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             ++ +  G PLA  SAN  G  S  +    L + + +E  L++DGG + + + STIV+ 
Sbjct: 131 VCRIAQQLGCPLATTSANTHGTPSAVD-GCGLEAELVEEADLVLDGGPAPLAIASTIVDC 189

Query: 184 QCEKKVRILRPGGLEIETL 202
               ++RILR G L  E +
Sbjct: 190 TG-NELRILREGALPTEDI 207


>gi|251782313|ref|YP_002996615.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390942|dbj|BAH81401.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 208

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 8/196 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ + +    +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D  
Sbjct: 10  SSIMERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFD 69

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +   +   P  L  L + F PGPLT++L   +   +     + L T  FR+P    T  
Sbjct: 70  SILAFSKEQPTYLEKLYQAFLPGPLTVILK--ANDHVPHWINSGLATVGFRLPSHPITAA 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G PL  PSAN SG+ S      I+     + I    D  ++  G +STI+++  E
Sbjct: 128 LIQKTG-PLIGPSANLSGKPSGKVFDQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGE 184

Query: 187 KKVRILRPGGLEIETL 202
             V ILR G +  E L
Sbjct: 185 SPV-ILRQGAITKEEL 199


>gi|62185126|ref|YP_219911.1| hypothetical protein CAB498 [Chlamydophila abortus S26/3]
 gi|62148193|emb|CAH63950.1| hypothetical protein CAB498 [Chlamydophila abortus S26/3]
          Length = 295

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 23/219 (10%)

Query: 3   IMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            MS TD +  L++A ++LD G  +A PT+TVYGL V    P A  ++Y +K R     L+
Sbjct: 7   FMSDTDPDVFLQQAADYLDQGKIVAFPTDTVYGLGVALNYPNAEEKIYALKHRDRGKSLV 66

Query: 62  CHVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +V+ I  ++K +  ++   +L L++ F PGPLTL++D       H     + +   FR+
Sbjct: 67  VYVNTIEDMEKFSGCTLSTRALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRI 119

Query: 120 -PCGFTKKLIETYGHPLAIPSANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIG 175
                  KLI+  G PL   SAN S     I+   V    S      IP     G    G
Sbjct: 120 LSIPIVNKLIDLAG-PLLGTSANISNFPPAITSNEVTEDFSQEDICVIP-----GCCSYG 173

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
           LEST+V+      +++ R G +  + ++  +  ++E C+
Sbjct: 174 LESTVVSAD---PLKVYREGMVPRQVIEDVVGEKVETCL 209


>gi|328777852|ref|XP_001120082.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Apis
           mellifera]
          Length = 270

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 2/137 (1%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L  A   L     IAIPT+T+YGLA    + ++I +LYEIKKR    PL   V++I+ +
Sbjct: 63  SLAVAITLLQQNEIIAIPTDTIYGLAGIVSSTSSIEKLYEIKKRDKDKPLSISVNNINDI 122

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           KK   VD L   L  L  PGP+T+++    T  ++P    N  T   R+P       I  
Sbjct: 123 KKWGIVDHLPQDLLSLILPGPITIIVK--RTPALNPALNPNHDTVGIRIPSFKFISYISA 180

Query: 131 YGHPLAIPSANRSGQIS 147
              PLA+ SAN S + S
Sbjct: 181 ITGPLALTSANLSNEKS 197


>gi|291457346|ref|ZP_06596736.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium breve DSM
           20213]
 gi|291381181|gb|EFE88699.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium breve DSM
           20213]
          Length = 228

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 10/208 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD +  + A    D GL I IPT+TVYG+A D RN  AI R+YE+K+RP    L   + 
Sbjct: 15  VTDESLAQAARIIHDGGL-IVIPTDTVYGVACDPRNAAAIARIYELKRRPRYKALQVLLD 73

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
               + +     P  L+ L+  F PG   P+ +     +   +   +     T   R+P 
Sbjct: 74  STDQLDELGLELPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTAEGRPGTQGIRIPN 133

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +++   G PLA  SANRSG  S   V   +  +   +I L +DGG ++  + ST+
Sbjct: 134 SALCLEILRATG-PLAASSANRSGDESAQTVDEAV-EAFGNQIDLYLDGGPTQGHISSTV 191

Query: 181 VNVQ--CEKKVRILRPGGLEIETLKRAI 206
           V         + ILR G +    +++A+
Sbjct: 192 VKADPYARDGIEILREGVIPQSMIRKAL 219


>gi|20094073|ref|NP_613920.1| translation factor (SUA5) [Methanopyrus kandleri AV19]
 gi|19887062|gb|AAM01850.1| Translation factor (SUA5) [Methanopyrus kandleri AV19]
          Length = 212

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 12/214 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           + ++   D +A++     L AG  +AIP +TVY L+ D+ N  A+RRLY  K+RP   P+
Sbjct: 2   VTVLEEEDPHAVKHVVRALRAGKLVAIPCDTVYSLSCDATNSEAVRRLYAAKERPKDKPV 61

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
              V   S  K    ++P+    A L    PGP+T+V        + P   A  +T   R
Sbjct: 62  SVAVH--SPEKALELLEPVPRLEAALETLTPGPVTIVAPRRPGV-VAPEVAAGRRTLGVR 118

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P   F  +++  +G P+   SAN SG+ + T+   +    +   + ++++G   + G  
Sbjct: 119 IPDHPFFLRVVRRFGKPIVTTSANVSGRPAPTDPDEVF-EQLGDRLDILVEGE-CRFGEP 176

Query: 178 STIVNVQCEKKVRILRPGGLE----IETLKRAIS 207
           ST++ +  E  + ILR G +     +ETL+   S
Sbjct: 177 STVIELTPEGNIDILREGAMPKEEILETLRGTTS 210


>gi|317485885|ref|ZP_07944745.1| Sua5/YciO/YrdC/YwlC family protein [Bilophila wadsworthia 3_1_6]
 gi|316922859|gb|EFV44085.1| Sua5/YciO/YrdC/YwlC family protein [Bilophila wadsworthia 3_1_6]
          Length = 217

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 3/187 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            ++A E +  G P+  PTET + L   + +  A  R+Y  K R  + PL   + D   + 
Sbjct: 17  FKRAVELMLDGHPVIFPTETFFALGSRALDADATARVYRAKHRSTVRPLPLILGDWEQLD 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             A V    + L K FWPGPL+++    L   DI    T  +       P    + L + 
Sbjct: 77  MIAKVHDELMPLLKRFWPGPLSVIFPARLRVPDILTGGTGRVAVRLSSHPV--ARALAQA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   SAN SG  ++ +V  +    I   + ++ +  +   GL ST+V    + ++R
Sbjct: 135 VGEPITSSSANISGNPAVVSVNQLDEELIASVMGILDEPPVPAGGLPSTLVERMEDGRLR 194

Query: 191 ILRPGGL 197
           +LR G +
Sbjct: 195 LLRAGAV 201


>gi|261403807|ref|YP_003248031.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius
           M7]
 gi|261370800|gb|ACX73549.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius
           M7]
          Length = 211

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 19/192 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L+K  E LD  + I   T+T+YG++ ++ N  A++++Y+IKKR    PL   + DI+ 
Sbjct: 21  NFLKK--EILDGKIIIC-GTDTLYGISANALNENAVKKIYQIKKRDYNKPLSICLKDINE 77

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF---RVPCGFTKK 126
           +KK+A V+ L+  + K F PGP+T++L   S       +  NL +  +   R+P    ++
Sbjct: 78  IKKYAYVNELAEKIIKHFLPGPITIILKKKS-------NIPNLVSKEYIGIRIP---DEE 127

Query: 127 LI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +I E    PL   SAN SG    T V+ I    I K +  +ID G  K    STI+ ++ 
Sbjct: 128 IIRELAIVPLTTTSANISGGKDPTCVEEI-DGEIIKNVDYVIDIGKCKYSKPSTIIKIK- 185

Query: 186 EKKVRILRPGGL 197
           +  + ++R G +
Sbjct: 186 DSSITLIREGAV 197


>gi|257466268|ref|ZP_05630579.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917425|ref|ZP_07913665.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691300|gb|EFS28135.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 202

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 8/195 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E +  G  I  PT+TVYG+    ++  A+  LY+ K R   +PLI  V  +  + + A V
Sbjct: 10  EQIKKGALIIYPTDTVYGIGASIQSEEALIHLYQAKSRNFSSPLIALVDSVERISEIAYV 69

Query: 77  DPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
           +     L KL   FWPG LT++L          +S  N  T   R+P       +I   G
Sbjct: 70  ERKKELLEKLSQKFWPGGLTIILPAKDCVPKIMISGGN--TVGVRIPNHEMALSIIRAAG 127

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             L   SAN SG+ + ++ +  LS +I +   ++IDGG+  +G  STI++   +  ++IL
Sbjct: 128 GILPTTSANISGEATPSSYQE-LSEAIKRNADIVIDGGVCPVGEASTILDF-TKDSIQIL 185

Query: 193 RPGGLEIETLKRAIS 207
           R G +  E ++  I 
Sbjct: 186 RLGAITKEEIEAVIG 200


>gi|257452399|ref|ZP_05617698.1| SUA5 protein [Fusobacterium sp. 3_1_5R]
 gi|317058942|ref|ZP_07923427.1| SUA5 protein [Fusobacterium sp. 3_1_5R]
 gi|313684618|gb|EFS21453.1| SUA5 protein [Fusobacterium sp. 3_1_5R]
          Length = 202

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 8/195 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E +  G  I  PT+TVYG+    ++  A+  LY+ K R   +PLI  V  +  + + A V
Sbjct: 10  EQIKKGALIIYPTDTVYGIGASIQSEEALIHLYQAKSRNFSSPLIALVDSVERISEIAYV 69

Query: 77  DPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
           +     L KL   FWPG LT++L          +S  N  T   R+P       +I   G
Sbjct: 70  ERKKELLEKLSQKFWPGGLTIILPAKDCVPKIMISGGN--TVGVRIPNHEMALSIIRASG 127

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             L   SAN SG+ + ++ +  LS +I +   ++IDGG+  +G  STI++   +  ++IL
Sbjct: 128 GILPTTSANISGEATPSSYQE-LSEAIKRNADIVIDGGVCPVGEASTILDF-TKDSIQIL 185

Query: 193 RPGGLEIETLKRAIS 207
           R G +  E ++  I 
Sbjct: 186 RLGAITKEEIEAVIG 200


>gi|50759736|ref|XP_417757.1| PREDICTED: similar to MGC97806 protein [Gallus gallus]
          Length = 255

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 20/197 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A   L  G  +A+PT+TVYG+A  +++  A++ +Y +K R    PL   + D+  
Sbjct: 47  EAVAAAVGALQEGGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPLAICLGDVEH 106

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCG-FTKK 126
           + ++  V+ +   L +   PGP+TLVL        D++P ++        R+P   F ++
Sbjct: 107 IYRYCHVN-VPDELLQDLLPGPVTLVLKRSEELNKDLNPFTS----LVGVRIPNHPFIRE 161

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LES 178
           L      PLA+ SAN S Q S   V       +  ++ L++DGG   IG        L S
Sbjct: 162 LARACPGPLALTSANVSSQASTLTVSEF--QDLWPQLSLVVDGG--PIGDVQSPECRLGS 217

Query: 179 TIVNVQCEKKVRILRPG 195
           T+V++    K  I+RPG
Sbjct: 218 TVVDLSVSGKFTIIRPG 234


>gi|257056937|ref|YP_003134769.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017]
 gi|256586809|gb|ACU97942.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017]
          Length = 216

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 17/209 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L+ A   + +G  + +PT+TVYG+  D+ + TA+R L + K R    P+        
Sbjct: 14  ADGLKAAISAVRSGRLVVLPTDTVYGIGADAFDATAVRALLQAKNRGPDMPVGV------ 67

Query: 69  MVKKHASVDPLSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           +V   ++VD L L L++        FWPG L++V+       +H        T   R+P 
Sbjct: 68  LVGSWSTVDGLVLGLSQEARTLIEAFWPGDLSIVVS--HAPSLHWNLGTTRGTVMLRMPL 125

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                 +     P+A+ SAN SGQ   + ++      + + + + +DGG S   + STIV
Sbjct: 126 HPVALEVLREVGPMAVSSANVSGQPPASTMQEA-KEQLGESVAVYLDGGPSGDPVPSTIV 184

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL 210
           ++  EK   +LR G +  E +  A+ +E+
Sbjct: 185 DLTGEKP-SLLREGAVSAEAVSEALGMEI 212


>gi|322411680|gb|EFY02588.1| Sua5/YciO/YrdC family protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 196

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D   + 
Sbjct: 1   MERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFDSIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+
Sbjct: 61  AFSKEQPTYLEKLYQAFLPGPLTVILK--ANDRVPHWINSGLATVGFRLPSHPITAALIQ 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG+ S      I+     + I    D  ++  G +STI+++  E  V
Sbjct: 119 KTG-PLIGPSANLSGKPSGKVFNQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGESPV 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E L
Sbjct: 176 -ILRQGAITKEEL 187


>gi|323127210|gb|ADX24507.1| Sua5/YciO/YrdC family protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 196

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D   + 
Sbjct: 1   MERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFDSIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+
Sbjct: 61  AFSKEQPTYLEKLYQAFLPGPLTVILK--ANNHVPHWINSGLATVGFRLPSHPITAALIQ 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG+ S      I+     + I    D  ++  G +STI+++  E  V
Sbjct: 119 KTG-PLIGPSANLSGKPSGKVFDQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGESPV 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E L
Sbjct: 176 -ILRQGAITKEEL 187


>gi|78357332|ref|YP_388781.1| translation factor SUA5 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219737|gb|ABB39086.1| translation factor SUA5 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 210

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 15/210 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL- 60
           Q + +TD N   +A   L  G  +  PTET + +   + +  A+  +Y IK+RP+  PL 
Sbjct: 4   QTIPVTDVN---EAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLP 60

Query: 61  --ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTAC 116
             I     + +V   +S  PL   LA+LFWPGPL++   L++ +D  P  L+    + A 
Sbjct: 61  VIIGSAGQLGLVTAVSS--PLVTRLAELFWPGPLSV---LVTASDRIPAILTGETGRVAV 115

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
              P      L    G  L   SAN SG+ ++T     L   +  ++  ++D   +  G 
Sbjct: 116 RVTPHPAAAALCTACGGALVSTSANISGRQAVTAASG-LDPELVGQVAAVVDMPPAPAGG 174

Query: 177 E-STIVNVQCEKKVRILRPGGLEIETLKRA 205
           + ST+V V     VRI+RPG +  + L+ A
Sbjct: 175 KPSTLVEVAGPAHVRIVRPGAVTEDALQTA 204


>gi|269219855|ref|ZP_06163709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269210760|gb|EEZ77100.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 205

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 20/191 (10%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LS 80
           GL + +PT+TVYGL  D R+P A+ RL   K R    P    V+ ++  ++ A   P ++
Sbjct: 22  GLLVVLPTDTVYGLGADPRSPRAVDRLLTAKGRGRDKPSPVLVASVAQAEELAREAPDVA 81

Query: 81  LHLAKLFWPGPLTLVL-------DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
             L   FWPG LTLVL       DL  T     L   N   A          +L++  G 
Sbjct: 82  KALMAEFWPGALTLVLPSERLGWDLGETNGTIALRMPNHPAAL---------ELLKEAG- 131

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PLA+ SAN SG+     V   +   +  ++ + +DGG    G  STIV+      +R+LR
Sbjct: 132 PLAVSSANLSGRPPAATVGEAV-EQLGGKVAVYLDGGPCPGGAPSTIVSFDG-GLMRVLR 189

Query: 194 PGGLEIETLKR 204
            GG+    L R
Sbjct: 190 EGGVGRGELAR 200


>gi|94994410|ref|YP_602508.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS10750]
 gi|94547918|gb|ABF37964.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS10750]
          Length = 206

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 8/186 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           ++ G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   +   P
Sbjct: 18  IELGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSKEQP 77

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L   +   +     + L T  FR+P    T  LI+  G PL 
Sbjct: 78  RYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTG-PLI 134

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S     HI+     +      D  ++  G +STI+++  E  V ILR G 
Sbjct: 135 GPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGECAV-ILRQGA 191

Query: 197 LEIETL 202
           +  E L
Sbjct: 192 ITKEEL 197


>gi|25011158|ref|NP_735553.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           NEM316]
 gi|76798420|ref|ZP_00780660.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           18RS21]
 gi|77410541|ref|ZP_00786902.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           CJB111]
 gi|77413279|ref|ZP_00789475.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 515]
 gi|23095557|emb|CAD46766.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586215|gb|EAO62733.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           18RS21]
 gi|77160666|gb|EAO71781.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 515]
 gi|77163489|gb|EAO74439.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           CJB111]
 gi|319745081|gb|EFV97407.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae ATCC
           13813]
          Length = 198

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 20/190 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHASVDPLSL 81
           + +PTETVYG+   + +  A+  +YE+KKRP   AMN  IC   D   + K++   P  L
Sbjct: 14  VIMPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNIC---DFETILKYSKNQPTYL 70

Query: 82  -HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             L   F PGPLT++L+  ++ ++     + L +  FR+P    T  +I  +G PL  PS
Sbjct: 71  KQLYDAFLPGPLTIILE--ASQEVPHWINSGLLSVGFRMPKHPVTLDMIANHG-PLIGPS 127

Query: 140 ANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           AN SG  S    + ++   +  +     L I+   +  G++STI+++  + +V+ILR G 
Sbjct: 128 ANISGCDSGRVFSEIQKQFNHQV-----LGIEDDKALTGVDSTIIDLSGD-RVKILRQGA 181

Query: 197 LEIETLKRAI 206
           +  E L   I
Sbjct: 182 ITQEVLTATI 191


>gi|260804901|ref|XP_002597326.1| hypothetical protein BRAFLDRAFT_203486 [Branchiostoma floridae]
 gi|229282589|gb|EEN53338.1| hypothetical protein BRAFLDRAFT_203486 [Branchiostoma floridae]
          Length = 826

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 13/187 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ LR   + LDAG    IPT+TVY LA   ++P AI+R+Y IK RPA  P+   +S + 
Sbjct: 618 TSGLRTIADLLDAGGVCGIPTDTVYALAASCKHPEAIKRIYHIKSRPAEKPICVCISHLG 677

Query: 69  MVK-KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA---CFRVP- 120
            ++       PL     +  +PG ++ V+   D L+   +   + + + T+   C RVP 
Sbjct: 678 QLEAAQPGFSPLLWDFMRRCYPGGISCVVPKGDWLANLGLGD-AVSYIGTSDSICIRVPD 736

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
              T  L+   G PL I SAN SG+   T+   +LSS   K   ++ DG  +++ + ST+
Sbjct: 737 STATAHLVSMTG-PLGITSANPSGEPDSTHHDMVLSSLGDKIDGMLCDGPSNEL-VASTV 794

Query: 181 VNVQCEK 187
           VN  C K
Sbjct: 795 VN--CMK 799


>gi|320538321|ref|ZP_08038202.1| Sua5/YciO/YrdC/YwlC family protein [Treponema phagedenis F0421]
 gi|320144820|gb|EFW36555.1| Sua5/YciO/YrdC/YwlC family protein [Treponema phagedenis F0421]
          Length = 181

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 21/197 (10%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+S  D N+     E L     + IPT+T+YG +     P    ++  IK R A    I 
Sbjct: 2   IVSKIDGNSADITAELLREKKIVIIPTDTIYGFS--GIMPETADKIAAIKGRNASKQFIA 59

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            ++     KK+  +      L+   WPGPLTL++ L            N  T  FR P  
Sbjct: 60  LIAKPEDYKKYTDISIPQKFLS--LWPGPLTLIMRL-----------KNGNTQAFRCPND 106

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTI 180
            + ++++E  G P+   SANRSG   +T+++ I      +++ LI+D G  KI GL STI
Sbjct: 107 NWLREVVEKTGKPIYSTSANRSGFPPLTDIEEI-KQEFQQDVSLIVDAG--KITGLASTI 163

Query: 181 VNVQCEKKVRILRPGGL 197
           V++   +  ++LR G +
Sbjct: 164 VDISGSEP-KLLRQGAI 179


>gi|206889211|ref|YP_002248839.1| Sua5/YciO/YrdC/YwlC family protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741149|gb|ACI20206.1| Sua5/YciO/YrdC/YwlC family protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 199

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 10/179 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKHASVDPLSLH 82
           I  PTET+YG+ V   +   +R+L+EIKKRP     PLI ++  + ++ +   +  ++  
Sbjct: 24  IIYPTETLYGIGVKYDSKKLLRKLFEIKKRPEEKSFPLIVNLQHLDLITEF--IPSIAKK 81

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSAN 141
             + +WPGPLTL+L   +  ++    T + K A  R+P   F  KLI+    P+   SAN
Sbjct: 82  FIEKYWPGPLTLLLP--AKKNLPKRITKDNKIAV-RMPGESFALKLIQLSQFPITATSAN 138

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
            SG  +   ++ ++       I L+IDGG    G+ STIV+   +   +++R G +E++
Sbjct: 139 ISGYPAADCIETVMKYFKDSFIDLLIDGG-KLPGIPSTIVDATVDPP-QLIRKGAIEVD 195


>gi|108804486|ref|YP_644423.1| translation factor SUA5 [Rubrobacter xylanophilus DSM 9941]
 gi|108765729|gb|ABG04611.1| translation factor SUA5 [Rubrobacter xylanophilus DSM 9941]
          Length = 191

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 17/121 (14%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP--LICHVSDISMVKKHASVDPLSLHLA 84
           +PTETV GL         + R+YEIK R    P  L+C  ++ +     A V PL+  LA
Sbjct: 21  VPTETVVGLVASE---AGLERIYEIKVRERGKPIALLCRSAEEAF-SLAAKVPPLARTLA 76

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
            L+WPGPLTLVLD                T   RVP G  + +++ YG PL   SAN SG
Sbjct: 77  DLYWPGPLTLVLD-----------RPGGGTIGLRVPRGRVRDVLDAYGGPLYATSANISG 125

Query: 145 Q 145
           +
Sbjct: 126 E 126


>gi|73976934|ref|XP_539586.2| PREDICTED: similar to ischemia/reperfusion inducible protein [Canis
           familiaris]
          Length = 274

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 16/196 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L +G  + +PT+T+YG A  +    A+  +Y +K R    PL   +  ++
Sbjct: 60  TEALRAAVSELRSGAVVTVPTDTLYGQACAASCSAALDAVYRLKGRSHAKPLAVCLGRVA 119

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L +   PGP+TLVL+       D++P +         R+P   F +
Sbjct: 120 DVYRYCRVS-VPEGLLRDLLPGPVTLVLERSQELNRDLNPCT----PLVGVRIPDHAFIQ 174

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LEST 179
            L + +G PLA+ SAN S Q S   V+      +  ++ L+IDGG    G      L ST
Sbjct: 175 DLAQVFGEPLALTSANLSSQASSLTVEEF--QDLWPQLSLVIDGGPIGDGQSPEYRLGST 232

Query: 180 IVNVQCEKKVRILRPG 195
           +V++    K  I+RPG
Sbjct: 233 VVDLSVPGKFGIIRPG 248


>gi|170781880|ref|YP_001710212.1| hypothetical protein CMS_1485 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156448|emb|CAQ01596.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 320

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 9/229 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +R A + +  G  + IPT+TVYG+A D+ NP A++RL + K R    P    +   S +
Sbjct: 20  GMRLARQAVGRGEVVVIPTDTVYGIAADAFNPEAVQRLLDAKGRGRDAPPPVLIPGQSTL 79

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
              A   P +   +   FWPG LT++L +   + +  L      T   R+P      ++ 
Sbjct: 80  DALADFVPDVVRRMVDEFWPGGLTVIL-VAQPSLVWDLGETR-GTVALRMPANSYALVLL 137

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN----VQC 185
               PLA+ SAN++GQ +    +  +   + + + + +D G +  G  STIV+     Q 
Sbjct: 138 AETGPLAVSSANKTGQPAAATAQEAV-DQLGESVDIFLD-GGAAGGAASTIVDASRVTQA 195

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
             +VRI+R G +    +++ I  ELE  V     P+   +     APR 
Sbjct: 196 GGRVRIVREGAITRAQIQQLIGDELEPVVTAPVEPEQAPVPDEPEAPRG 244


>gi|190570595|ref|YP_001974953.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019153|ref|ZP_03334960.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356867|emb|CAQ54241.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995262|gb|EEB55903.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 195

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 7/182 (3%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PTETVY LA ++    +I ++Y IKKR    PL   VSD+  +   A V    ++L   F
Sbjct: 18  PTETVYALACNALGKESIEKIYRIKKRSQNKPLSIFVSDVDSLTNIAKVKEEYINLINYF 77

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTAC-FRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145
            PGP+T +L L    D   L     K +   R+P       ++     P+   S N SG+
Sbjct: 78  SPGPMTYILPL---QDNSILPNEFFKDSIGIRIPDHPIAISILNELKTPVVATSINISGE 134

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205
            SI   + I   SI + +  +I+      G+ESTI+++  + K+++LR G + ++T+   
Sbjct: 135 KSICKARDI-PQSIKQHLSAVIEDDELVSGIESTIIDLTGD-KIKVLRKGKISLQTINNE 192

Query: 206 IS 207
            S
Sbjct: 193 FS 194


>gi|45357749|ref|NP_987306.1| hypothetical protein MMP0186 [Methanococcus maripaludis S2]
 gi|45047309|emb|CAF29742.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 206

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 109/221 (49%), Gaps = 30/221 (13%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+   I++SN       +  A + +  G  I   T+T+YGL+ ++ +  AI ++Y IK+R
Sbjct: 1   MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKER 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVL-------DLLSTTDIHPL 107
               P+   + +   ++ +  VD  +  + + F PGP+T++L       D+L   D+   
Sbjct: 61  DPNKPISISLGEKKQIENYVYVDETAKKIIEKFMPGPITVILKKKDIIPDILGKDDVG-- 118

Query: 108 STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLI 166
                     R+P     + I     PL   SAN SG+ + T+++ +    I KE + LI
Sbjct: 119 ---------VRIPDNDVIRKIAVV--PLTTTSANISGKTAPTSLEEV--DQIIKEKVDLI 165

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           +D G  K  ++STIV V  + K+ ++R G +  E + +A++
Sbjct: 166 VDTGPCKYKVQSTIVKV-IDGKIELIREGKIPFEEILKAVN 205


>gi|329929001|ref|ZP_08282803.1| SUA5 domain protein [Paenibacillus sp. HGF5]
 gi|328936990|gb|EGG33419.1| SUA5 domain protein [Paenibacillus sp. HGF5]
          Length = 221

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 23/181 (12%)

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-AISVELEYCVD------ 215
           I  ++DGG + +G+EST+V V  +  V +LRPGG+  E L   A SV  +  +       
Sbjct: 30  IDGVLDGGPAGVGVESTVVQVGEDGAVTVLRPGGVTAEQLAAVAASVRQDPALQRAAGEA 89

Query: 216 ETSTPQSPGMLKSHYAPRSQVRL----RAIHVNPREALIRFGNVPIKNIEN--------- 262
           E+  P+SPGM  +HYAP+  + +    RA  V+ R A           +           
Sbjct: 90  ESPAPRSPGMKYTHYAPKGAMCVVQGPRADTVSARIAAELEAAARRGEVTGVLSFDEHIG 149

Query: 263 ---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
              A ++++L      +EAA  L+  ++  D+ GA+ I   + P+ GLG A+ NRL +AA
Sbjct: 150 HYAADVAVSLGSLAAPEEAARRLYAGLRRFDEEGATFILAEACPDQGLGAAVMNRLLKAA 209

Query: 320 A 320
            
Sbjct: 210 G 210


>gi|325002822|ref|ZP_08123934.1| translation factor SUA5 [Pseudonocardia sp. P1]
          Length = 220

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 7/203 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   + +G  + +PT+TVYG+  D+ + TA+R L   K+R    P+   V   + +
Sbjct: 21  GLTAAARAVRSGELVVLPTDTVYGIGCDAFSGTAVRNLLSAKRRGPDMPVGVLVGSWTTI 80

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
                SV P +  L + FWPG ++LVL+   +      ST    T   R+P      +L+
Sbjct: 81  DGLVTSVPPSARALIEAFWPGEVSLVLEHAPSLAWDLGSTRG--TVMLRMPLHPVALELL 138

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A+ SAN SG    + V   + + +   + + +DGG S   + STIV++   + 
Sbjct: 139 REVG-PMAVSSANTSGNPPASTVTEAI-TQLASSVQVYLDGGPSGDPVASTIVDLTGVRP 196

Query: 189 VRILRPGGLEIETLKRAISVELE 211
            R+LR GG+  E +   +  E++
Sbjct: 197 -RLLREGGVSAEQVAEVVGQEVD 218


>gi|300933614|ref|ZP_07148870.1| hypothetical protein CresD4_06047 [Corynebacterium resistens DSM
           45100]
          Length = 219

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 13/214 (6%)

Query: 2   QIMSITDSNALRKACEF----LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q +  TD N   +A E     +D G  + +PT+TVYG+  D+ +  A+  L   K R   
Sbjct: 3   QRVDATDPNDRERAIEIAASAVDGGRLVVLPTDTVYGIGCDAFDNQAVEALLRAKGRGPD 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TA 115
            P+   V     ++        ++  L + FWPG L++V+    +    P +  + + T 
Sbjct: 63  MPVPVLVGSWDTIQGLVRDYTYNMRLLVEAFWPGGLSMVVHQAPSL---PWNLGDTRGTV 119

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      +L+   G P+A+ SAN SGQ   TNV+ +    +  ++ + I+GG +  
Sbjct: 120 MLRMPEHPIAIELLNQTG-PMAVSSANISGQPPATNVQ-MAEDQLGADVAVYINGGNATH 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208
           G+ STIV++   +  RILR G +  E + R + +
Sbjct: 178 GVASTIVDLSSGRP-RILREGAITAEQIGRVLGM 210


>gi|283783533|ref|YP_003374287.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis 409-05]
 gi|283442164|gb|ADB14630.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis 409-05]
          Length = 228

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 24/229 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L+ A + ++ G  I +PT+TVYG+A D  N  A+ ++YE+K+RP    L
Sbjct: 1   MSKICTINEESLQMAAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKAL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLT--------LVLDLLST------TDIH 105
              +S +  ++K     P  L  L K F PG  +         V   L+T      TD  
Sbjct: 61  QILMSGVEDLEKLGLYLPSPLDILGKKFLPGGYSPIARAKKDSVASKLATLCKTNETDEK 120

Query: 106 PLSTANLK----TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160
              T   +    T   RVP C    +++   G PLA  SANRSG  S  +V+    ++  
Sbjct: 121 TQETETTQAIESTQGVRVPDCPELMQILRVTG-PLAASSANRSGNESADSVEEAF-AAFG 178

Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKK--VRILRPGGLEIETLKRAIS 207
            EIPL ++ G ++  + ST+V      K  + ILR G +    ++ A+S
Sbjct: 179 NEIPLYLNAGPTRSHVASTVVGADSNDKDGIVILREGVISECEIRNALS 227


>gi|22537233|ref|NP_688084.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           2603V/R]
 gi|22534100|gb|AAM99956.1|AE014241_7 Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           2603V/R]
          Length = 183

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 20/188 (10%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMVKKHASVDPLSL-H 82
           +PTETVYG+   + +  A+  +YE+KKRP   AMN  IC   D   + K++   P  L  
Sbjct: 1   MPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNIC---DFETILKYSKNQPTYLKQ 57

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
           L   F PGPLT++L+  ++ ++     + L +  FR+P    T  +I  +G PL  PSAN
Sbjct: 58  LYDAFLPGPLTIILE--ASQEVPHWINSGLLSVGFRMPKHPVTLDMIANHG-PLIGPSAN 114

Query: 142 RSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
            SG  S    + ++   +  +     L I+   +  G++STI+++  + +V+ILR G + 
Sbjct: 115 ISGCDSGRVFSEIQKQFNHQV-----LGIEDDKALTGVDSTIIDLSGD-RVKILRQGAIT 168

Query: 199 IETLKRAI 206
            E L   I
Sbjct: 169 QEVLTATI 176


>gi|73666905|ref|YP_302921.1| translation factor SUA5 [Ehrlichia canis str. Jake]
 gi|72394046|gb|AAZ68323.1| translation factor SUA5 [Ehrlichia canis str. Jake]
          Length = 198

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 7/185 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA + L+    IA PTETVY LA D+ +  AI+++Y+IK R    PL   V +I+ +K+ 
Sbjct: 4   KAIQALNNKHLIAFPTETVYALAGDAYSIEAIQKIYQIKGRSYNKPLSLLVGNINKIKQF 63

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           +++   ++ + +   PGP+T VL + +   + P    N  T   R+P      +++    
Sbjct: 64  SNLTDHAIKIIQKLSPGPITFVLPIHNYHKL-PRQFFN-NTIGIRIPNHPIALEIVNKIE 121

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
           +P+   S N SGQ S+T   H +  +I K I + I+      G EST++++   K   IL
Sbjct: 122 NPVVGTSINISGQPSVT-AAHQIHETIKKHISVTIEDDSLVNGTESTVIDLTSYK---IL 177

Query: 193 RPGGL 197
           R G +
Sbjct: 178 RAGAV 182


>gi|54310611|ref|YP_131631.1| putative Sua5/YciO/YrdC family protein [Photobacterium profundum
           SS9]
 gi|46915054|emb|CAG21829.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum
           SS9]
          Length = 192

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 6/141 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + L++    L +G  IA PTE V+G+  D  NP A+ +L  +K+RP    LI   ++ 
Sbjct: 7   DMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGLILIAANY 66

Query: 68  SMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             ++ +     LS L   K+F  WPGP+T V+ +    DI PL T    +   RV     
Sbjct: 67  QQLQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPV--KKDISPLLTGKFTSIAVRVSDHPL 124

Query: 124 TKKLIETYGHPLAIPSANRSG 144
            +KL   +G P+   SAN +G
Sbjct: 125 VQKLCHQFGKPITSTSANLTG 145


>gi|115380236|ref|ZP_01467257.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821629|ref|YP_003953987.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362760|gb|EAU61974.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394701|gb|ADO72160.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 203

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E L  G  +A PT+T YGL  D  +  AI RLY++K R    PL     D+S V K+
Sbjct: 20  RAVEVLSRGGLVAYPTDTYYGLGCDLASKKAIERLYQLKGRDKKKPLSFLCPDLSDVAKY 79

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           A V   +    K   PG  T +L+  +T  +  +  +  K    RVP     + L    G
Sbjct: 80  AHVSNFAYRTMKGLTPGAFTFILE--ATRIVPDMMMSRQKQVGIRVPDAPLARALAAGLG 137

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PL   SA+      + + + I    +   + LI+DGG++ I   ST+V++  +  + IL
Sbjct: 138 RPLVTTSASDEEGEPLIDARDI-KERLGHGLDLILDGGVTLIE-PSTVVSLIGD-SIEIL 194

Query: 193 RPGGLEIE 200
           R G  +++
Sbjct: 195 RQGKGQLD 202


>gi|297243818|ref|ZP_06927748.1| Sua5/YciO/YrdC family translation factor [Gardnerella vaginalis
           AMD]
 gi|296888239|gb|EFH26981.1| Sua5/YciO/YrdC family translation factor [Gardnerella vaginalis
           AMD]
          Length = 228

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 24/222 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  +L+ A + ++ G  I +PT+TVYG+A D  N  A+ ++YE+K+RP    L   +S +
Sbjct: 8   NEESLQMAAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKALQILMSGV 67

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLT--------LVLDLLST------TDIHPLSTANL 112
             ++K     P  L  L K F PG  +         V   L+T      TD     T   
Sbjct: 68  EDLEKLGLYLPSPLDILGKKFLPGGYSPIARAKKDSVASKLATLCKTNETDEKTQETETT 127

Query: 113 K----TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           +    T   RVP C    +++   G PLA  SANRSG  S  +V+     +   EIPL +
Sbjct: 128 QAIESTQGVRVPDCPELMQILRVTG-PLAASSANRSGNESADSVEEAF-EAFGNEIPLYL 185

Query: 168 DGGISKIGLESTIVNVQCEKK--VRILRPGGLEIETLKRAIS 207
           + G ++  + ST+V      K  + ILR G +    ++ A+S
Sbjct: 186 NAGPTRSHVASTVVGADSSDKDGIVILREGVISECEIRNALS 227


>gi|81300673|ref|YP_400881.1| hypothetical protein Synpcc7942_1864 [Synechococcus elongatus PCC
           7942]
 gi|81169554|gb|ABB57894.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 195

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 25/189 (13%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  I+ PT+T+  LAV    P    ++Y +K+RP+  PLI   +  + +   A   P  
Sbjct: 15  AGQVISFPTDTLPALAV---QPDQAAQIYRLKQRPSEKPLILMAATAAELWPFAQGSPED 71

Query: 81  LH----LAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
                 +A  +WPG LTLVL   D L    ++PL  +++     R+P C   ++++   G
Sbjct: 72  QAQWNAIANQYWPGALTLVLPASDRLPAA-VNPLDRSSIG---LRIPACALARQILAETG 127

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIP----LIIDGGISKIGLESTIVNVQCEKK 188
            PLA  SANRSG+ ++ +       +I  E P    L  D      GL ST+V  Q + +
Sbjct: 128 -PLATTSANRSGEPALLD-----PDAIAAEFPEVTVLAEDPWPDPSGLASTVVRWQADGQ 181

Query: 189 VRILRPGGL 197
            ++LR G +
Sbjct: 182 WQVLRQGSI 190


>gi|295394651|ref|ZP_06804870.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972544|gb|EFG48400.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 220

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 7/185 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLHL 83
           + IPT+TVYG+A D+ +P  + +L + K R   M P +      +++    +VD   + L
Sbjct: 32  LVIPTDTVYGIAADAFSPQGVAKLLQAKGRGRDMPPPVLVPRAETVMGLAEAVDSSVMEL 91

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
              FWPGPLT++ +  +   +H        T   R+P    T  L+   G PLA+ SAN 
Sbjct: 92  TARFWPGPLTIICN--AQPSLHWDLGDTHGTVGLRMPDHEDTLALLSKVG-PLAVSSANL 148

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ +  NV+    S +   + + +DGG +  G  STI+++      R+LR G +  + L
Sbjct: 149 SGEPAAVNVEQA-QSMLGDRVDIFLDGGEAPGGQSSTIIDMSGSVP-RMLREGPISFDEL 206

Query: 203 KRAIS 207
              + 
Sbjct: 207 AEVVD 211


>gi|116753773|ref|YP_842891.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta thermophila PT]
 gi|116665224|gb|ABK14251.1| translation factor SUA5 [Methanosaeta thermophila PT]
          Length = 198

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 15/205 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++  TD  A    C  L  G+ +  PTETVYG+  ++ + ++I R+Y IK+RP   P+
Sbjct: 3   MAVVGGTDEAA---RC-ILSGGI-VVYPTETVYGIGANALDESSIVRVYAIKRRPLDKPI 57

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119
              VS   M+   A V P  L + +   PGP+T    L+    I P + TA       R 
Sbjct: 58  SIAVSSFEMLCDVAHVRPEDLDMMRKLLPGPVTF---LVRKRSIVPDMLTAGSPLVGVRY 114

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +LIE  G P+   SAN +G    ++ K I    I   + ++IDGG  +  + S
Sbjct: 115 PDHEMALRLIEMTG-PITSTSANITGAPPPSDPKEI-DPEILSRVDMLIDGGRCRYAVPS 172

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           T+V++      RILR G +    L+
Sbjct: 173 TLVDLSTR---RILRMGAMADRVLE 194


>gi|262198093|ref|YP_003269302.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365]
 gi|262081440|gb|ACY17409.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365]
          Length = 205

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 16/204 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS ++ + + +A + L  G  + +PTET YGLAVD  NP A+R L ++K+RPA  P    
Sbjct: 1   MSASERD-VDRAVDILRTGGIVCMPTETTYGLAVDIDNPAALRALAQLKQRPADAPFGLV 59

Query: 64  VSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRV 119
           + +   + +  ++  PL+  +A+  WPG LTLV+     L    I P     ++ +  RV
Sbjct: 60  LGERGHIHQLTALWPPLAEDMARACWPGALTLVVPARPELPGELIGPGGGVGVRLSSHRV 119

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P      L    G  +   SAN SG  +  ++    + +   +    +DGG +     ST
Sbjct: 120 PTALAAAL----GRAITATSANPSGAPAACDIAR--ARAYFGDAVHYLDGGPATPA-AST 172

Query: 180 IVNVQ----CEKKVRILRPGGLEI 199
           +V ++     + + R+LR G +++
Sbjct: 173 VVAIEDQGDGQARARLLRAGPVDV 196


>gi|15606072|ref|NP_213449.1| hypothetical protein aq_651 [Aquifex aeolicus VF5]
 gi|2983259|gb|AAC06854.1| hypothetical protein aq_651 [Aquifex aeolicus VF5]
          Length = 198

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 12/203 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL++A E L  G  I  PT+T+YG+  D+ N  A++RLY+I +RP+  P +  + D S
Sbjct: 7   KEALKEAVEILKKGGIIVAPTDTLYGILADATNEEAVKRLYKI-RRPSGKPFLVLLPDES 65

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            ++K   +D    H  KL     LTLV     T D   L   +  T   R+P  GF + L
Sbjct: 66  WLEK-LCLDVKEEH-KKLLKVEGLTLVFR--KTCD--KLDYVSKGTLAVRLPQKGFIRDL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+  PS N  G+    +V+    +    ++ L ID G+ K G  STI+++   +
Sbjct: 120 LSELKKPVVAPSVNPEGKKPAESVEEAY-NYFGNKVDLYIDAGVIK-GEPSTILDLT--E 175

Query: 188 KVRILRPGGLEIETLKRAISVEL 210
            V+ILR G ++ E +++ ++ +L
Sbjct: 176 GVKILREGKVKKEEIEKILNRKL 198


>gi|288818672|ref|YP_003433020.1| translation factor SUA5 protein [Hydrogenobacter thermophilus TK-6]
 gi|288788072|dbj|BAI69819.1| translation factor SUA5 protein [Hydrogenobacter thermophilus TK-6]
 gi|308752261|gb|ADO45744.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 203

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 22/210 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+++      AL  A + L+ G  +  PT+T+YGL  D+  P A+ RLY I +RP+  P 
Sbjct: 1   MKVVKAHQKRALPLAAKVLEKGGIVFAPTDTIYGLLADATKPKAVERLYSI-RRPSGRPF 59

Query: 61  ICHVSD------ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           I  + D        +  K    D L  H+  +F+           +T  +H   T   K+
Sbjct: 60  ILLLPDKYWLEVFDIYAKPTYWDLLDAHITVIFYKR---------TTIPMH--LTRGKKS 108

Query: 115 ACFRVP--CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
             FRVP    F + L+     PL  PSAN  G     +VK  +      ++ L +D G  
Sbjct: 109 LAFRVPKRGTFIRDLLLYLDAPLVAPSANPEGMEPAKDVKMAM-DYFGDKVDLYVDAGRI 167

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           + G  STIV +  + ++R++R G +  + +
Sbjct: 168 E-GKPSTIVRLIGKNRIRLVREGSVSFKEI 196


>gi|90406707|ref|ZP_01214900.1| Sua5/YciO/YrdC family protein [Psychromonas sp. CNPT3]
 gi|90312160|gb|EAS40252.1| Sua5/YciO/YrdC family protein [Psychromonas sp. CNPT3]
          Length = 187

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 11/187 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L  A + L+    IA PTE+V+GL  D  +P A++++ +IK+RPA   LI   ++   +
Sbjct: 5   SLTNALKVLNNQGVIAYPTESVFGLGCDPDSPDALQKILKIKQRPAHKGLILIAANTKQL 64

Query: 71  KKHASVDPLS-LHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           + +A    LS   +A++   WPGP+T ++   +  ++ PL   + ++   RV       +
Sbjct: 65  QDYADFSQLSPAQIARMQATWPGPVTWIVP--AKKNLQPLIKGDFESVAVRVTAHPIVSE 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL---IIDGGISKIGLESTIVNV 183
           L   +  P+   SAN SGQ +  N   +    +  + PL   I+   +S  G  S I + 
Sbjct: 123 LCTLFNKPIISTSANISGQDACQNAAQV--QKMFVDTPLLETIVQASVSAFGSPSQIYDA 180

Query: 184 QCEKKVR 190
              K++R
Sbjct: 181 LTGKRLR 187


>gi|168009850|ref|XP_001757618.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691312|gb|EDQ77675.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 154

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA+PT+T+YGLA D+ +  AIRR+YEIK+R   +PL   VSD+ +V  +     L   L 
Sbjct: 20  IAVPTDTLYGLACDASSAEAIRRVYEIKERKLSSPLAVCVSDVDVVAAYGETAQLPAGLL 79

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
               PG +TL+L       +       + +   R+P   F + +  ++G  +A+ SAN S
Sbjct: 80  NALLPGAVTLLLPRREPGFLSASLNPGIGSIGIRIPDSDFIRGVARSFGGAVALTSANTS 139

Query: 144 GQISITNVKHI 154
              S   ++  
Sbjct: 140 SHASTVRIEEF 150


>gi|76801361|ref|YP_326369.1| hypothetical protein NP1420A [Natronomonas pharaonis DSM 2160]
 gi|76557226|emb|CAI48801.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 194

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  +  PTETVYGLA D+ +P A++R++E K R    P+   +  ++   
Sbjct: 6   LTDAVAALRRGDLVVYPTETVYGLAADALDPEAVKRVFEAKGRDRDKPVSMALPSVAAAA 65

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++ +         + F PGP+T+   LL   D  P +  A       RVP     + +  
Sbjct: 66  EYVTFSDRERAFCEAFLPGPVTV---LLERGDRVPDVLVAGRDRVGLRVPAHDIARDLAR 122

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SG  S    + +   +  +E  +++DGG +  G EST+V++  +  VR
Sbjct: 123 RVGPITATSANVSGNPSARRPEAV--DATIRERAVVVDGGETP-GTESTVVDIAADDIVR 179


>gi|301063995|ref|ZP_07204460.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
 gi|300441906|gb|EFK06206.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
          Length = 215

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+ A   L +G  +A PTE+ YGLA D+ N  AIRRL++IK+R    P++  + D+  +K
Sbjct: 19  LKDAAAILKSGGLVAYPTESYYGLAADAANEAAIRRLFQIKRRKPGEPILLLIPDVGSLK 78

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  A V   +  L   FWPG LT+V +  +  D+  L TA       R+        L++
Sbjct: 79  RCVAHVPEAAKRLMDAFWPGGLTIVFE--AQKDLSMLLTAGTSKIGIRLSSHPLATALVK 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   SAN SG+      + +  +++ K +  I+DGG +     ST+++V     +
Sbjct: 137 AMGSPITGTSANVSGEPPCRTPRGVF-NALGKGVDKILDGGETPGEKPSTVLDVT-SYPL 194

Query: 190 RILRPG 195
            ILR G
Sbjct: 195 TILREG 200


>gi|62751448|ref|NP_001015837.1| yrdC domain containing [Xenopus (Silurana) tropicalis]
 gi|58476879|gb|AAH90125.1| yrdC domain containing [Xenopus (Silurana) tropicalis]
          Length = 238

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 16/193 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  +   L  G  IA+PT+T+YG+A  ++N  +I  +Y +K R    PL   V ++  + 
Sbjct: 33  LNTSLGILQQGGVIAVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVDDIY 92

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLI 128
           ++  V  +   L +   PGP+TLV++       +++P ++        R+P   F ++L 
Sbjct: 93  RYCQVR-VPDQLLRDLLPGPVTLVMERSDRLNKELNPFTSL----VGVRIPDHAFIRQLA 147

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG-----LESTIVN 182
           E    PLA+ SAN S Q S   V+      +  ++ L++DGG I ++      L ST+V+
Sbjct: 148 EVCSEPLALTSANISSQDSTLTVEEF--RDLWPKLSLVVDGGPIGELSSPECRLGSTVVD 205

Query: 183 VQCEKKVRILRPG 195
           +    K  ++R G
Sbjct: 206 LSVPGKFTVIRDG 218


>gi|171779354|ref|ZP_02920318.1| hypothetical protein STRINF_01199 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281971|gb|EDT47402.1| hypothetical protein STRINF_01199 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 199

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  + +PTETVYGL   + N  A+  +Y +K RP    +  +V+D   +   +  
Sbjct: 6   EILQTGGAVILPTETVYGLFAQAMNEEAVEHVYRLKCRPKDKAMNLNVADYETILAFSKN 65

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            P  L  L   F PGPLT++L   +   +     + L T  FR+P    T  LI+  G P
Sbjct: 66  QPTYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPKHPQTLALIKETG-P 122

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKKVRI 191
           L  PSAN SGQ S       + + I K+    ++G     S  G++STI+++  +   RI
Sbjct: 123 LIGPSANISGQES-----GKVFAQIQKQFDNSVEGFADDSSITGVDSTILDLSGD-FARI 176

Query: 192 LRPGGLEIETL 202
           LR G +  E L
Sbjct: 177 LRQGAITKEDL 187


>gi|86158876|ref|YP_465661.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775387|gb|ABC82224.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 212

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 5/184 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PTET YGL   + +  A+ RL   K RP   PL    +D   V + AS++  +  LA
Sbjct: 22  VVYPTETFYGLGALASDGAALARLAAAKLRPEGKPLPLVAADREQVDRVASLEGAAARLA 81

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
              WPGPLTLVL   +   +    TA   T   R+P     + L    G  L   SAN S
Sbjct: 82  GRLWPGPLTLVLP--ARPGLSEAITAGSGTVGVRIPGSEVARALARMAGGALVSTSANLS 139

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G      V+  L +++   +  ++D G +  GL ST+V V  E ++R++RPG + IE + 
Sbjct: 140 GGPPPDRVE-ALDAALRAAVDHVLDAGPTPGGLPSTVVAVAGE-ELRVVRPGAVSIEQVT 197

Query: 204 RAIS 207
            A++
Sbjct: 198 AALA 201


>gi|213964492|ref|ZP_03392692.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium amycolatum
           SK46]
 gi|213952685|gb|EEB64067.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium amycolatum
           SK46]
          Length = 218

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 92/196 (46%), Gaps = 14/196 (7%)

Query: 7   TDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           TD N   A+  A + + AG  + +PT+TVYGL  D+ +  A+  L   K R    P+   
Sbjct: 9   TDENRERAIAAAVDAVKAGRLVVMPTDTVYGLGCDAFDNQAVASLLRAKHRGPDMPVPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V   + ++       P +  L + FWPG L+LV++   +   +   TA   T   R+P  
Sbjct: 69  VGSWNTIEGLVREYSPAARTLVEAFWPGGLSLVVNQAPSLPWNLGDTAG--TVMLRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLEST 179
                I     P+A+ SAN SGQ   TN    K +L      E  + +DGG + IG  ST
Sbjct: 127 PIAIEILRRTGPMAVSSANISGQAPATNAVRAKQMLGG----EAAVYVDGGEATIGTPST 182

Query: 180 IVNVQCEKKVRILRPG 195
           IV++      RILR G
Sbjct: 183 IVDISTPVP-RILREG 197


>gi|197121814|ref|YP_002133765.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K]
 gi|196171663|gb|ACG72636.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K]
          Length = 212

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  +  PTET YGL   + +  A+ RL   K RP   PL    +D   V + AS++  +
Sbjct: 18  AGGIVVYPTETFYGLGALASDDAALARLAAAKLRPEGKPLPLVAADREQVDRVASLEGAA 77

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             LA   WPGPLTLVL   +   +    TA   T   R+P     + L    G  L   S
Sbjct: 78  ARLAGRLWPGPLTLVLP--ARPGLSEAVTAGSGTVGVRIPGSEVARALARMAGGALVSTS 135

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG      V+  L +++  ++  ++D G +  GL ST+V V  E  +R++RPG + I
Sbjct: 136 ANLSGGPPPDRVEA-LDAALRAQVDHVLDAGPTPGGLPSTVVAVAGE-ALRVVRPGAVSI 193

Query: 200 ETLKRAIS 207
           E +  A+ 
Sbjct: 194 EQVTAALG 201


>gi|282857413|ref|ZP_06266646.1| Sua5/YciO/YrdC/YwlC family protein [Pyramidobacter piscolens W5455]
 gi|282584698|gb|EFB90033.1| Sua5/YciO/YrdC/YwlC family protein [Pyramidobacter piscolens W5455]
          Length = 140

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 46/72 (63%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  ++ +  A++++Y  K RP+ NPLI H      V++ A VD  +  L 
Sbjct: 33  VAFPTETVYGLGGNALDGEAVKKIYAAKGRPSDNPLILHFPSPEAVERAAFVDDRARRLM 92

Query: 85  KLFWPGPLTLVL 96
             FWPGPLTLVL
Sbjct: 93  ARFWPGPLTLVL 104


>gi|288559761|ref|YP_003423247.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter
           ruminantium M1]
 gi|288542471|gb|ADC46355.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter
           ruminantium M1]
          Length = 221

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 103/202 (50%), Gaps = 10/202 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A + +  G  I  PT+TVYGL  +  N  A++R+Y+IK R    PL   VSDI
Sbjct: 12  DMDLIDEAIDIMAQGGVILYPTDTVYGLGANIFNNQAVQRIYKIKHRERSKPLSVLVSDI 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             ++  A +D  S  +   + PGP T +L+   T  + P  +++ K    R+P     ++
Sbjct: 72  ESLELIAHLDDHSREVVNKWLPGPFTFILNKQKT--VSPYVSSSTKVGV-RIPDNKIARE 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +  P+   SAN + + +++N   IL   I   I L ID G    G  ST++++   
Sbjct: 129 LASIF--PITTTSANIANEETLSNPHDIL-KQIGDCIDLAIDVGDLTGGKPSTVIDLTSA 185

Query: 187 KKVRILRPGGL--EIETLKRAI 206
           K   ++R G +  ++E++K  I
Sbjct: 186 KP-SLVRKGLISNDLESIKEDI 206


>gi|313127651|ref|YP_004037921.1| translation factor sua5 [Halogeometricum borinquense DSM 11551]
 gi|312294016|gb|ADQ68476.1| translation factor SUA5 [Halogeometricum borinquense DSM 11551]
          Length = 208

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 4/156 (2%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PTETVYGL  D  +  A+ R++E+K R    PL   V D+   +++  +          F
Sbjct: 24  PTETVYGLGADGTDADAVERVFELKGRSRDKPLSIGVPDVDAAREYTRLTSFDADFMAEF 83

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQI 146
            PGP+T+V++  S   +  + TA       RVP              P+   SANRSG  
Sbjct: 84  LPGPVTVVVERGSQ--LPDVLTAGGDRVGVRVPDHEVALDFFRRADCPVTATSANRSGAP 141

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           S+T+    L +++   +  +ID G +  G  ST+V+
Sbjct: 142 SVTHPDQ-LDATLKDSVGAVIDAGEAPGGTGSTVVD 176


>gi|326332909|ref|ZP_08199166.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325949267|gb|EGD41350.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 242

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 7/180 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           + +PT+TVYG+A D+ +  A+  L   K R    P    +S+++ +   A+  P  +  L
Sbjct: 30  VIVPTDTVYGVAADAFDKGAVAGLLAAKGRGRAMPPPVLISNVATLDALATRIPDWARTL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANR 142
            + FWPG LT+V     +     L  A  +T   R+P     +++I+  G PLA  SANR
Sbjct: 90  VEEFWPGALTVVFHQQPSLQWD-LGEAR-QTVAVRIPDSDILRRIIDRVG-PLATSSANR 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           +   + TN        + K +  IIDGG S +G  STIV+   ++  ++LR G + I+ +
Sbjct: 147 TTMPAATNADQ-ADEMLGKMVRAIIDGGESPVGEASTIVSATGDEP-KVLREGAISIDRI 204


>gi|315125143|ref|YP_004067146.1| double-stranded RNA-binding protein [Pseudoalteromonas sp. SM9913]
 gi|315013656|gb|ADT66994.1| double-stranded RNA-binding protein [Pseudoalteromonas sp. SM9913]
          Length = 187

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 11/169 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++D ++L  A   L+ G  I  PTE VYGL  D  N  A+ RL  IK+RP    LI    
Sbjct: 1   MSDLSSLSAAITSLEQGDVILYPTEAVYGLGCDPDNQQAVERLLSIKQRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDPLSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +   + K+  VD   L +   A +F  WPG LT V+    +T      T    T   RV 
Sbjct: 61  NYGQLLKY--VDDAKLPMDKRADIFSSWPGALTWVMPAAKST--PKWLTGQFDTIAVRVT 116

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              T K+L + +G PL   SAN +GQ ++T++         +++   +D
Sbjct: 117 NHPTVKRLCQQFGKPLVSTSANLTGQATVTSIVEA-QQQFAEQVSFYVD 164


>gi|317131938|ref|YP_004091252.1| SUA5/yciO/yrdC domain [Ethanoligenens harbinense YUAN-3]
 gi|315469917|gb|ADU26521.1| SUA5/yciO/yrdC domain [Ethanoligenens harbinense YUAN-3]
          Length = 216

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 11/200 (5%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E +  G PI IPT+T Y LA  + +  AI ++++ KKRP    L     D S   K+   
Sbjct: 16  EHMQKGNPIIIPTDTNYNLACLANSAEAIDKIFKYKKRPKNKALSLFFLDPSDWNKYGIC 75

Query: 77  DPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPL---STANLKTACFRVPCGFTKKLIETY 131
           D   +   LA+ FWPGPL ++++  ++   + L   ST  L +        F   L    
Sbjct: 76  DNERIIERLAETFWPGPLNIIINKRNSDYDYMLNNKSTIALGSVSNPTWREFMSHL---N 132

Query: 132 GHPLAIPSANRSGQISITNV-KHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKV 189
           G P+AI SAN SG +  T V K I  S +   +   I+   +      STIV+V  +  V
Sbjct: 133 GEPIAITSANISGTVDNTLVTKEIAISQMKNCVDFFIESSNAISTSKSSTIVSV-IDNTV 191

Query: 190 RILRPGGLEIETLKRAISVE 209
           +++R G ++ + L  A+ VE
Sbjct: 192 KLIREGDIDKKALDNALHVE 211


>gi|288800032|ref|ZP_06405491.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333280|gb|EFC71759.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 189

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 13/166 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T S  ++ A E L  G  I  PT+TV+G+  D+ N +A+ R+YE+KKR     +IC V 
Sbjct: 1   MTQSEDIKNAVEVLKRGGLILYPTDTVWGIGCDATNESAVARVYELKKRADSKAMICLVD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
             S V+++    P ++  L +L    P T++LD     ++ P   A   +   R+    F
Sbjct: 61  SDSRVQRYVKNVPNVAWDLMELA-DKPTTIILD--DAVNLAPNLIAEDGSIAIRITREAF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +K+L   +  PL   SAN SG+ + +N + I+          IIDG
Sbjct: 118 SKELCYRFQKPLVSTSANISGEPTASNYRDIVQE--------IIDG 155


>gi|114561217|ref|YP_748730.1| SUA5/yciO/yrdC domain-containing protein [Shewanella frigidimarina
           NCIMB 400]
 gi|122301201|sp|Q08A23|RIMN_SHEFN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|114332510|gb|ABI69892.1| translation factor SUA5 [Shewanella frigidimarina NCIMB 400]
          Length = 188

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 10/181 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  IA PTE V+GL  D  N +AI +L  +K+RP    LI   S    +  +  +  
Sbjct: 13  IQQGGVIAYPTEAVFGLGCDPDNDSAIEKLLVVKQRPWQKGLILVASSFEQLLPYLDITQ 72

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           L+   L  A+  WPGP T V+ + S   +  L      +   RV      ++L +T   P
Sbjct: 73  LTEQQLQFAQSKWPGPFTFVMPIQS--HVSKLLCGEFDSIAVRVSAHPVVRELCDTLNKP 130

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L   SAN +G+  + + +HI+ +    +I  +I G + +    STI++    +  +ILR 
Sbjct: 131 LVSTSANLAGEQPVVDAQHII-TDFSDKIDALILGKLGEQRQPSTIIDA---RSGQILRN 186

Query: 195 G 195
           G
Sbjct: 187 G 187


>gi|159905153|ref|YP_001548815.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C6]
 gi|159886646|gb|ABX01583.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C6]
          Length = 206

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 28/219 (12%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+   I++SN       +  A + +  G  I   T+T+YGL+ ++ +  AI ++Y IK+R
Sbjct: 1   MKTFEISESNLKNCEKEIETAKKMILNGKVILCGTDTLYGLSTNALDKNAIEKIYSIKER 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVL-------DLLSTTDIHPL 107
               P+   + +   ++ +  VD ++  + + F PGP+T++L       D+L   D+   
Sbjct: 61  DPNKPISISLGEKKQIENYVYVDSIAKKIIEKFMPGPITVILKKKDIIPDILGKDDVG-- 118

Query: 108 STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                     R+P     + I     PL   SAN SG+ + ++++ +  + I +++ LII
Sbjct: 119 ---------VRIPDNDVIRKIAIV--PLTTTSANISGKTAPSSLEEV-DTVIKEKVDLII 166

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           + G SK  ++STIV V    K+ ++R G +  E + +A+
Sbjct: 167 NTGPSKYKVQSTIVKV-IGGKIELIREGKIPFEEILKAV 204


>gi|320096084|ref|ZP_08027684.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976964|gb|EFW08707.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 228

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 5/193 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + IPT+TVYG+  D+ NP A+ RL  +K R    P    V+D   V +    V   +  L
Sbjct: 35  LVIPTDTVYGIGADAANPGAVARLLAVKGRGRQMPPPVLVADADAVDRLCEDVPEAARRL 94

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A+  WPGPLTLVL            T    T   RVP       +     P+A+ SAN +
Sbjct: 95  ARAHWPGPLTLVLRARDGLGWDLGDTGG--TIALRVPDHPGALALLRATGPMAVTSANTT 152

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+   T +   + +     + L  D G +     ST+V        R+LR G L ++ + 
Sbjct: 153 GRPPATTIDQAV-AYFGGAVDLYADAGPTASSTPSTVVAF-AGGAARVLRHGALGVDDIA 210

Query: 204 RAISVELEYCVDE 216
               +E E    E
Sbjct: 211 ALAPLEAEGRAGE 223


>gi|284163341|ref|YP_003401620.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM
           5511]
 gi|284012996|gb|ADB58947.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM
           5511]
          Length = 202

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-- 65
           D + L +A E + AG  +  PTETVYGL  D  +  A+ R++E K R    P+   V   
Sbjct: 2   DDDDLERAAEAIRAGELVVYPTETVYGLGADGLDADAVERVFEAKGRDRSKPVSVAVPTF 61

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           + ++ + +          A  F PGP+TL+ +   T  +  + TA       RVP C   
Sbjct: 62  ETALEEGYVRASERERAFADEFLPGPVTLLCE--RTEALPDVLTAGRDRVGIRVPDCEPA 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVN 182
            + +E    P+   SAN SG+ S   V+ I    + + + L  D     I   + ST+V+
Sbjct: 120 LRFLEAAERPVTATSANVSGEPSARRVEDIGQQVLDEAVVLEADDLYESIEETVPSTVVD 179

Query: 183 VQCEKKVRILRPGGL--EIETLKRA 205
           ++ E    I R G L  EIE    A
Sbjct: 180 LEAET---IHRRGALADEIEAWLEA 201


>gi|282851604|ref|ZP_06260969.1| SUA5 domain protein [Lactobacillus gasseri 224-1]
 gi|282557572|gb|EFB63169.1| SUA5 domain protein [Lactobacillus gasseri 224-1]
          Length = 204

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 17/205 (8%)

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I   G P+  PSAN S + S T   H+    +  +I  IID G ++IGLESTIV++  E
Sbjct: 1   MISELGKPIVGPSANTSTKPSPTTAGHVYHD-LKGKIAGIIDNGPTEIGLESTIVDLSVE 59

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHV 243
               +LRPG +  E + + +  E+      T T   P++PGM   HYAP + V +    V
Sbjct: 60  TPT-VLRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAPVFI----V 114

Query: 244 NPREALIRF------GNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASS 296
           +  E   +       G   +  + + I S N    G  + +AA NLF  ++  D      
Sbjct: 115 DKEEDFSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDSENNIK 174

Query: 297 IAFSSIPNHG-LGIAINNRLERAAA 320
             +    +HG +  A  NRL +AAA
Sbjct: 175 RIYVQGFDHGTISPAYMNRLNKAAA 199


>gi|219850818|ref|YP_002465250.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris
           E1-9c]
 gi|219545077|gb|ACL15527.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris
           E1-9c]
          Length = 193

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 20/191 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +++A + L     +  PT+T+YGL  D+ +  A+  +YE K RP   P+   VSD  M
Sbjct: 2   DRIKEAVKVLHRDGLVVYPTDTIYGLGADALSDEAVAAVYEAKHRPLAKPISIAVSDRDM 61

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKL 127
           +   A V P++    + F PGP T+V   L    + P + T        R+P      +L
Sbjct: 62  LAALAVVTPVAEQFIEAFLPGPFTVV---LKAKKVLPETLTGGTGMIGLRIPDHPIALEL 118

Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           I  +  P+   SAN SG    ++I +V H+          L+ID G    GL ST+V++ 
Sbjct: 119 IREFDGPITATSANLSGGKDPVTINDV-HV-------RYDLLIDAG-RLTGLPSTVVDLV 169

Query: 185 CEKKVRILRPG 195
               +R++RPG
Sbjct: 170 ---DMRMIRPG 177


>gi|117925136|ref|YP_865753.1| translation factor SUA5 [Magnetococcus sp. MC-1]
 gi|117608892|gb|ABK44347.1| translation factor SUA5 [Magnetococcus sp. MC-1]
          Length = 206

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 3/161 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+A + L  G  I  PT+T YGL     N   + R+  IK+    + L    +D+S + 
Sbjct: 17  LRQAAQILQEGGVIVYPTDTTYGLGCVMSNRKGVERVVRIKQLSDTHQLTLLCADLSDIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A VD     L K F PGP T VL+  ++ ++        KT   RVP       L+E 
Sbjct: 77  NYARVDNSCYRLLKRFLPGPYTFVLE--ASREVPKKILPRRKTIGLRVPNHQICHALLEL 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            G PL   S    G   I     ++   +  ++ LIIDGGI
Sbjct: 135 VGEPLLSTSVRLPGHEEIFTDPSLIRDQLEHQVDLIIDGGI 175


>gi|227080291|ref|YP_002808842.1| Sua5/YciO/YrdC family protein [Vibrio cholerae M66-2]
 gi|298501236|ref|ZP_07011035.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757]
 gi|227008179|gb|ACP04391.1| Sua5/YciO/YrdC family protein [Vibrio cholerae M66-2]
 gi|297540108|gb|EFH76170.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757]
          Length = 188

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA++RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMQRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTK 125
            +     L+   LA++   WP PLT V+   ++ D          T   RV   P    +
Sbjct: 67  PYVDETQLTADQLAQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHP--VVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRCGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|149370609|ref|ZP_01890298.1| hypothetical protein SCB49_14135 [unidentified eubacterium SCB49]
 gi|149356160|gb|EDM44717.1| hypothetical protein SCB49_14135 [unidentified eubacterium SCB49]
          Length = 186

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 5/182 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA E L  G  I  PT+TV+G+  D+ NP AI ++Y +KKR     LIC V D  M+ + 
Sbjct: 7   KALEVLKKGGLILYPTDTVWGIGCDATNPEAIAKVYALKKRVETKSLICLVHDFKMLNQF 66

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETYG 132
               P   +    +   P T+V D      I     A   T  FRV    F+K L+  + 
Sbjct: 67  VEDIPEVAYDILKYAEKPTTIVYD--DPIRIAENIVAPDNTLGFRVTDDAFSKNLVRKFR 124

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCEKKVRI 191
            P+   SAN SGQ +  + K I S  I   +  +++   +K  G  S I+ +  +  V+I
Sbjct: 125 WPVVATSANVSGQKTPKSFKDI-SQEILDGVDYVVNLNRNKPSGKPSAIIKLSKDGGVKI 183

Query: 192 LR 193
           +R
Sbjct: 184 IR 185


>gi|289178307|gb|ADC85553.1| SUA5 protein [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 231

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 14/221 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   D   L  A   +  G  + IPT+TVYG+A D  N  AI R+Y  K RPA   L
Sbjct: 10  MADVRSADEQTLADARRIIADGGLVVIPTDTVYGIACDPCNAAAIARIYAAKHRPADKAL 69

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KT 114
              + D+S++ K     P  L  LA+ F PG  + +       D  PL T  +     +T
Sbjct: 70  QVIMPDLSVLPKLGLALPTPLDALARRFLPGAFSPI---AVADDDSPLLTVRVDDSGART 126

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              RVP    T +++   G P+A  SANRSG  S   V   + +++   + L IDGG + 
Sbjct: 127 QGIRVPDSEVTLRVLRAIG-PVAASSANRSGNESAQTVDEAV-AALGDSVDLYIDGGPTV 184

Query: 174 IGLESTIVNVQCE--KKVRILRPGGLEIETLKRAISVELEY 212
               ST+V    +    + ILR G LE + ++RA+  E  +
Sbjct: 185 SHTASTVVAADPDAPDGIVILREGRLEADAVRRAVREEARH 225


>gi|307107023|gb|EFN55267.1| hypothetical protein CHLNCDRAFT_35508 [Chlorella variabilis]
          Length = 284

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 4/183 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L     IA+PT+T+YGLA  +R+   +  +Y  K+R    PL   V+DI+ V + A
Sbjct: 83  AAEALGRAEVIAVPTDTLYGLAACARSSQGVAHIYATKRRGDHKPLAIAVADIADVPRFA 142

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
            V  L   L +   PGP+TL+L       +       +     R+P   F + +   +  
Sbjct: 143 DVQHLPEGLLEDLLPGPVTLLLQRRPDAPLAAQFNPGVGAIGIRIPDSAFIRAVCRQHRA 202

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRIL 192
            LA+ SAN SG +S  +V       +     L+ DGG    G   ST++++    +  + 
Sbjct: 203 ALALTSANISGSMSSVDVGEF--QELWPSCSLVFDGGQLDAGRSGSTVIDLTQPGQFSVA 260

Query: 193 RPG 195
           R G
Sbjct: 261 RRG 263


>gi|303244474|ref|ZP_07330809.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis
           IH1]
 gi|302485172|gb|EFL48101.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis
           IH1]
          Length = 212

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 8/176 (4%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+T+YGL  +  +  A++++Y++KKR    P+   + D   ++K+A V+ +S  +   F 
Sbjct: 43  TDTLYGLCANVLDENAVKKVYKLKKRDLNKPISIFLKDKEDIEKYAYVNEISKKIIDKFL 102

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PG LT++   L   D  P +  +      R+P   ++ + E    PL   SAN SG+   
Sbjct: 103 PGALTII---LKKKDTIP-NIVSKDYIGIRIPD--SEIIRELSIVPLTATSANLSGEKPP 156

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204
           T+VK I S  + K + LIID G+ K    STI+ +     + ++R G +  + +K+
Sbjct: 157 TSVKEI-SDELRKNVDLIIDTGVCKYKTPSTIIKI-LNDNIELIREGAIPFDKIKK 210


>gi|57032998|gb|AAH88928.1| LOC496333 protein [Xenopus laevis]
          Length = 204

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 16/186 (8%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I +PT+T+YG+A  ++N  +I  +Y +K R    PL   V ++  + ++  V+ 
Sbjct: 6   LQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCQVN- 64

Query: 79  LSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
           +   L +   PGP+TLV++       +++P ++        R+P   F ++L E    PL
Sbjct: 65  VPDQLLRDLLPGPVTLVMERSGRLNKELNPFTSL----VGVRIPDHAFIRQLAEVCSEPL 120

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG-----LESTIVNVQCEKKV 189
           A+ SAN S Q S   V+      +  ++ L++DGG I ++      L ST+V++    K 
Sbjct: 121 ALTSANISSQESTLTVEEF--RDLWPKLSLVVDGGPIGEVSSPECRLGSTVVDLSVPGKF 178

Query: 190 RILRPG 195
            ++R G
Sbjct: 179 IVIRDG 184


>gi|329945874|ref|ZP_08293561.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328528322|gb|EGF55300.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 246

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 24/218 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSD 66
           +AL+ ACE L AG  + +PT+TVYG+  ++ +  A+ RL   K R    P   L+   +D
Sbjct: 20  DALQPACEHLRAGGLVILPTDTVYGIGCNAADAGAVERLLASKGRGRQMPPPVLVAGPAD 79

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGF 123
           ++ V   A V   +  L + FWPGPLTL+LD  +  T D+   S     T   R+P    
Sbjct: 80  LTGVV--AQVPEAARILMEAFWPGPLTLILDADAALTWDLGETS----GTIAIRMPDHEL 133

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILS---------SSICKEIPLIIDGGISKI 174
              L+   G PLA+ SAN +G    T+     +          ++  E  L++DGG +  
Sbjct: 134 ALDLLRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRGVDAVGTEDILLLDGGATSG 192

Query: 175 GLESTIVNVQCEKKV--RILRPGGLEIETLKRAISVEL 210
            + STIV +        RILR G L    L+R   V +
Sbjct: 193 PVPSTIVTLAGAHACSPRILRKGVLSPADLERVAGVNV 230


>gi|329116378|ref|ZP_08245095.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parauberis NCFD
           2020]
 gi|326906783|gb|EGE53697.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parauberis NCFD
           2020]
          Length = 196

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 21/209 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68
           +++  E +  G  + +PTETVYG+   + +  A+  +Y++K+RP   AMN  I    DI 
Sbjct: 1   MKELIEQIKNGQAVVLPTETVYGIFAKAMDENAVDNVYQLKQRPRDKAMNLNIASYQDIL 60

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
               ++   P  L  L   F PGPLT++L   +   +     +   T  FR+P    T +
Sbjct: 61  ---DYSQGQPAYLEKLVNAFLPGPLTIILK--ANQKVPAWINSGKTTVGFRMPNHPVTCQ 115

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNV 183
           +I+  G PL  PSAN SG  S    K I+     K     +DG     +  G +STI++V
Sbjct: 116 IIKETG-PLIGPSANISGDDSGKTFKAIM-----KAFNYQVDGYSDDAALTGQDSTIIDV 169

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEY 212
               K +ILR G +  E L   +  ELE+
Sbjct: 170 SG-LKAKILRQGSITKEELLDVVP-ELEF 196


>gi|257790786|ref|YP_003181392.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella lenta DSM 2243]
 gi|257474683|gb|ACV55003.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella lenta DSM 2243]
          Length = 202

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 22/200 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVS 65
           S++ R+A   L  G  +  PTETVYGL V      +   LY++K+R    P   L+  V 
Sbjct: 5   SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC----FRVPC 121
           D+     H  V  L+  LA+ +WPGPLTL+++    +D  P   A  ++A      R+P 
Sbjct: 65  DLDRYGAH--VPDLARRLARAYWPGPLTLIVE---ASDAVP---AAFRSAAGSIGLRMPD 116

Query: 122 GFTK-KLIETYGHPLAIPSANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
             T  +LIE  G PLA  SAN SG     +   +  +L++  C  + +  D    K G+ 
Sbjct: 117 NDTALELIEAVGCPLATTSANISGLQAPGAFDALDPVLAA--CVGVVVPDDTDDDKSGVA 174

Query: 178 STIVNVQCEKKVRILRPGGL 197
           ST+++       RILR G +
Sbjct: 175 STVLDCTVNPP-RILREGAV 193


>gi|183602495|ref|ZP_02963860.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683538|ref|YP_002469921.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190569|ref|YP_002967963.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195975|ref|YP_002969530.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218136|gb|EDT88782.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621188|gb|ACL29345.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248961|gb|ACS45901.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250529|gb|ACS47468.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793556|gb|ADG33091.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 222

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 104/221 (47%), Gaps = 14/221 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   D   L  A   +  G  + IPT+TVYG+A D  N  AI R+Y  K RPA   L
Sbjct: 1   MADVRSADEQTLADARRIIADGGLVVIPTDTVYGIACDPCNAAAIARIYAAKHRPADKAL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KT 114
              + D+S++ K     P  L  LA+ F PG  + +       D  PL T  +     +T
Sbjct: 61  QVIMPDLSVLPKLGLALPTPLDALARRFLPGAFSPI---AVADDDSPLLTVRVDDSGART 117

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              RVP    T +++   G P+A  SANRSG  S   V   + +++   + L IDGG + 
Sbjct: 118 QGIRVPDSEVTLRVLRAIG-PVAASSANRSGNESAQTVDEAV-AALGDSVDLYIDGGPTV 175

Query: 174 IGLESTIVNVQCE--KKVRILRPGGLEIETLKRAISVELEY 212
               ST+V    +    + ILR G LE + ++RA+  E  +
Sbjct: 176 SHTASTVVAADPDAPDGIVILREGRLEADAVRRAVREEARH 216


>gi|147903663|ref|NP_001082498.1| yrdC domain containing [Xenopus laevis]
 gi|49118602|gb|AAH73618.1| LOC398509 protein [Xenopus laevis]
          Length = 236

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 20/195 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  +   L  G  I +PT+T+YG+A  ++N  +I  +Y +K R    PL   V ++  + 
Sbjct: 31  LNTSLGILQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIY 90

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLI 128
           ++  V+ +   L +   PGP+TLV++       +++P ++        R+P   F ++L 
Sbjct: 91  RYCRVN-VPDQLLRDLLPGPVTLVMERSDRLNKELNPFTSL----VGVRIPDHAFIRQLA 145

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--------LESTI 180
           E    PLA+ SAN S Q S   V+      +  ++ L++DGG   IG        L ST+
Sbjct: 146 EVCSEPLALTSANISSQESTLTVEEF--RDLWPKLSLVVDGG--PIGEHSSPECRLGSTV 201

Query: 181 VNVQCEKKVRILRPG 195
           V++    K  ++R G
Sbjct: 202 VDLSVPGKFTVIRDG 216


>gi|302341611|ref|YP_003806140.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
 gi|301638224|gb|ADK83546.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
          Length = 208

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVDPLSLHL 83
           +A PTET+YGLAVD+ N  A+ RL  +K+RP   P    + ++  +    A++ PL+  L
Sbjct: 32  VAFPTETLYGLAVDAANHRALARLAALKERPDDKPFPLIIGAEGQIAPLAATLTPLARRL 91

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLST----ANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
               WPGPLT+VL   +   + P  T      L+ +   V  G    L    G  +   S
Sbjct: 92  MAAHWPGPLTIVLA--AAPGLPPELTHQGGVALRLSSHPVAAGLALAL----GRAVTATS 145

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN +G+ +       L  ++   I L++DGG    G  STIV +   ++ ++LR G + +
Sbjct: 146 ANLAGRPAQAR-PEALDPALLARIDLLLDGGPCPGGAPSTIV-LASGRRAKVLRQGAVAL 203

Query: 200 ETLKR 204
              +R
Sbjct: 204 AEEER 208


>gi|119961897|ref|YP_948325.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1]
 gi|119948756|gb|ABM07667.1| putative Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens
           TC1]
          Length = 304

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 13/189 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDISMVKKHASVDPLSL 81
           I +PT+TVYG+A D+ +P A+  L   K R    P   LI  V+ +  +      D  + 
Sbjct: 30  IVLPTDTVYGIAADAFSPLAVTMLLASKGRSRQMPPPVLIPRVNALDGLATDVPAD--AR 87

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA+ FWPG LTL+L    + D     T    T   R+P       +     PLA+ SAN
Sbjct: 88  ALAQAFWPGGLTLILHAQPSLDWDLGDTKG--TVALRMPDDQIALELLGLTGPLAVSSAN 145

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKI----GLESTIVNVQCEKKVRILRPGGL 197
           R+GQ +           + + + + ++GG   I     L STIV+       R++R G +
Sbjct: 146 RTGQEAAQTASEA-RLQLAESVEVYLEGGFRPIKGTAALPSTIVDA-TSTPFRVVRQGAI 203

Query: 198 EIETLKRAI 206
           E+E L+  +
Sbjct: 204 ELERLREIV 212


>gi|326774096|ref|ZP_08233378.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505]
 gi|326636235|gb|EGE37139.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505]
          Length = 253

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 26/224 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L+ AC+ L AG  + +PT+TVYG+  ++ +  A+ RL   K R    P    V+D + 
Sbjct: 17  DPLQPACDHLRAGGLVILPTDTVYGIGCNAADAAAVERLLAAKGRGRQMPPPVLVADPAD 76

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +    +  P + H L + FWPG LTL+L+   T       T    T   R+P    T  L
Sbjct: 77  LIGLVAQVPEAAHALMEAFWPGALTLILEADETLTWDLGETGG--TLAVRMPAHELTLNL 134

Query: 128 IETYGHPLAIPSANRSG-------------------QISITNVKHILSSSICKEIPLIID 168
           +   G PLA+ SAN +G                    +         + +  +E  L++D
Sbjct: 135 LRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRSVDELTADGEAAGADWREDILLLD 193

Query: 169 GGISKIGLESTIVNVQCE--KKVRILRPGGLEIETLKRAISVEL 210
           GG +   + STIV +  E  +  RILR G L +  L+R   V L
Sbjct: 194 GGATPGPVPSTIVTLAGEHARAPRILRQGVLALADLERVAGVAL 237


>gi|116671163|ref|YP_832096.1| translation factor SUA5 [Arthrobacter sp. FB24]
 gi|116611272|gb|ABK03996.1| translation factor SUA5 [Arthrobacter sp. FB24]
          Length = 245

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +  PT+TVYG+  D+ +P A+  L   K R    P    +  ++ +   A+  P     L
Sbjct: 30  VVFPTDTVYGIGADAFSPQAVTLLLASKGRSRKMPPPVLIPRLNALDGLATDVPAEARKL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A+ FWPG LT++     + D     T    T   R+P     + + T   PLA+ SANR+
Sbjct: 90  AEAFWPGGLTMIFHAQPSLDWDLGETKG--TVALRMPADDVAQDLLTLTGPLAVSSANRT 147

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIG------LESTIVNVQCEKKVRILRPGGL 197
           GQ +       + + + + + + ++GG+   G      L STIV+      +R++R G +
Sbjct: 148 GQPAARTAAEAM-TQLAESVEVYLEGGLRPDGDADADALPSTIVDATA-LPLRVVRQGAI 205

Query: 198 EIETLKRAI 206
            +E L+  +
Sbjct: 206 SVERLREVV 214


>gi|212288267|sp|Q6LLJ9|RIMN_PHOPR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 185

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L++    L +G  IA PTE V+G+  D  NP A+ +L  +K+RP    LI   ++   
Sbjct: 2   DNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGLILIAANYQQ 61

Query: 70  VKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     LS L   K+F  WPGP+T V+ +    DI PL T    +   RV      +
Sbjct: 62  LQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPV--KKDISPLLTGKFTSIAVRVSDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSG 144
           KL   +G P+   SAN +G
Sbjct: 120 KLCHQFGKPITSTSANLTG 138


>gi|163752812|ref|ZP_02159936.1| hypothetical protein KAOT1_11667 [Kordia algicida OT-1]
 gi|161326544|gb|EDP97869.1| hypothetical protein KAOT1_11667 [Kordia algicida OT-1]
          Length = 186

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 15/192 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++K  + L  G  I  PT+TV+GL  D+ N  A+ ++Y++K R     LIC VSDI 
Sbjct: 2   TEEIQKTFDELQLGNTILYPTDTVWGLGCDATNSEAVAKIYQLKNREESKALICLVSDIR 61

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NL----KTACFRVPCG- 122
           M++++    P   +        P T++ D       +P+  A NL     T   R+P   
Sbjct: 62  MLERYVENIPDVTYDLLEAANRPTTIIYD-------NPVGIAKNLVAADNTLAIRIPDDK 114

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIV 181
           F +KLI  +  P+   SAN SGQ +  +   I S+ I   +  I++    K  ++ STI+
Sbjct: 115 FCQKLIRKFKRPIVSTSANISGQPTPKSFDEI-SNEIKTNVDYIVNLKDDKKAVKPSTII 173

Query: 182 NVQCEKKVRILR 193
            ++   +++I+R
Sbjct: 174 QLRSNGEIKIIR 185


>gi|189424902|ref|YP_001952079.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ]
 gi|189421161|gb|ACD95559.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ]
          Length = 203

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 6/190 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  + L  G  +A PT+T YGL     N   + R+Y++K+R    P     SD+S V ++
Sbjct: 17  QVVDCLKNGGIVAYPTDTTYGLGCSIFNKKGLERIYQVKQRDKRKPFSFICSDLSEVSRY 76

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A +   +  + K + PGP T VL+  ++ ++  L     KT   R+P       +++  G
Sbjct: 77  ARLTNHAFKIMKRYLPGPYTFVLE--ASREVPDLLITKQKTVGIRMPDNAICLSIVQGLG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+   SAN SG+  + +   I +      + L++DGG+    + S +  V   K+  +L
Sbjct: 135 VPIVTTSANLSGEDPVGDPLEI-NRLFGHALDLVVDGGLLTTDVSSVVSLVG--KEPELL 191

Query: 193 RPGGLEIETL 202
           R G  ++  L
Sbjct: 192 REGAGDLSWL 201


>gi|68171141|ref|ZP_00544550.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658214|ref|YP_507600.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999466|gb|EAM86106.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599671|gb|ABD45140.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 194

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 7/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L     I  PTETVY LA  + +  A++++Y+IK R    PL   +S+I  +K
Sbjct: 2   ISEAVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + +++   +  + +   PGP+T VL + +   + P    N  T   R+P      +++  
Sbjct: 62  QFSTLTEHTFKIIQKLSPGPVTFVLPIHNYNKL-PRQFFN-DTIGIRIPDHPIALEILSN 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           + +P+   S N SGQ S+T   H +  +I + I +II+      G+EST++++   K   
Sbjct: 120 FDNPVVGTSVNISGQPSVT-ASHQVQETIKQHISVIIEDDSLVNGIESTVIDLTSYK--- 175

Query: 191 ILRPGGL 197
           ILR G +
Sbjct: 176 ILRTGAV 182


>gi|115495697|ref|NP_001069018.1| yrdC domain-containing protein, mitochondrial precursor [Bos
           taurus]
 gi|122145558|sp|Q0VC80|YRDC_BOVIN RecName: Full=YrdC domain-containing protein, mitochondrial; Flags:
           Precursor
 gi|111307172|gb|AAI20308.1| YrdC domain containing (E. coli) [Bos taurus]
 gi|296488877|gb|DAA30990.1| yrdC domain-containing protein, mitochondrial precursor [Bos
           taurus]
          Length = 276

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 16/196 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 65  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVA 124

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 125 DVYRYCHVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 179

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LEST 179
            L + +G PLA+ SAN S Q S  NV+      +   + LIIDGG    G      L ST
Sbjct: 180 DLAQMFGGPLALTSANLSSQSSSLNVEEF--QDLWPHLSLIIDGGPIGDGQSPECRLGST 237

Query: 180 IVNVQCEKKVRILRPG 195
           +V++    K  I+RPG
Sbjct: 238 VVDLSVPGKFGIIRPG 253


>gi|52550560|gb|AAU84409.1| putative translation factor [uncultured archaeon GZfos9E5]
          Length = 222

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 8/179 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++ A   +  G  +  PTETVYGL  D+ +  A+R +Y+IK+R    P+   VS   
Sbjct: 6   EDQIKTATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAVTQPISIAVSSFE 65

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKK 126
           M+ + A +D     +     PGP+T+   L    DI P + TA  +    R P      +
Sbjct: 66  MLHEVADIDFECFEIIAELLPGPVTI---LFKKKDIVPAILTAASEVVGVRFPDNEIVTR 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLESTIVNV 183
           +I+  G P+   SAN SG+   T ++ +      K   + +II+GG  K  + ST+V++
Sbjct: 123 IIKETG-PITATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMPSTVVDM 180


>gi|58584895|ref|YP_198468.1| putative translation factor, SUA5 [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419211|gb|AAW71226.1| Putative translation factor, SUA5 [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 208

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 29/202 (14%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
            L +  PTETVY LA ++ +  AI ++Y++KKR    PL   VSD+  + K A ++   +
Sbjct: 12  NLLVCFPTETVYALACNALDDGAIEKIYQVKKRSQDKPLSIFVSDVCSLVKIARLEEKYI 71

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCGFTKKLIETYGHPLAIPSA 140
            L   F PGP+T +L         PL   N L    F+   G     I    HP+AI   
Sbjct: 72  DLINHFSPGPITYIL---------PLKNNNMLPNRFFKGSIG-----IRIPDHPIAISIL 117

Query: 141 NR------------SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           NR            SG+ S+     I   SI + +  +I+G     G+ESTI ++    +
Sbjct: 118 NRLKIPIVATSINVSGEKSVCKASDI-PQSIKQHLSAVIEGDELVSGIESTITDL-TGNR 175

Query: 189 VRILRPGGLEIETLKRAISVEL 210
           ++ LR G + ++ +   +  E+
Sbjct: 176 IKFLREGIISLQVVNNMLLTEI 197


>gi|325963838|ref|YP_004241744.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469925|gb|ADX73610.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3]
          Length = 281

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 13/189 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDISMVKKHASVDPLSL 81
           +  PT+TVYG+A D+ +P A+  L   K R    P   LI  ++ +  +    S D  + 
Sbjct: 30  VVFPTDTVYGIAADAFSPQAVTMLLVSKGRSRTMPPPVLIPRINALDGLATDVSAD--AR 87

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA+ FWPG LTL+L    + D     T    T   R+P     + + T   PLA+ SAN
Sbjct: 88  KLAEAFWPGGLTLILHAQPSLDWDLGETKG--TVALRMPDDEIAQELLTLTGPLAVSSAN 145

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVRILRPGGL 197
           R+GQ +           +   + + ++GG      ++ + STIV+     ++R++R G +
Sbjct: 146 RTGQ-APGQTAAAAREQLADSVEVYLEGGFRPREGELAVPSTIVDA-TGPRLRVVRNGAV 203

Query: 198 EIETLKRAI 206
            ++ L+  +
Sbjct: 204 SLDQLREHV 212


>gi|332017466|gb|EGI58189.1| YrdC domain-containing protein, mitochondrial [Acromyrmex
           echinatior]
          Length = 263

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G  IA+PT+TVYGLA  + +  AI+RLYEIK+R    PL   +S++  V    
Sbjct: 60  AVELLQQGKVIAVPTDTVYGLACLAADSHAIQRLYEIKQRDERKPLAICLSNVKEVGIWG 119

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            +D +   + K   PGP T+ L    T  ++      + T   RVP   F + + +  G 
Sbjct: 120 IIDNIPAGMLKDLLPGPYTICLR--RTPALNKNLNPGIDTVGIRVPNDKFIRSVAQIVG- 176

Query: 134 PLAIPSANRSGQIS 147
           PLA+ SAN S ++S
Sbjct: 177 PLALTSANVSNELS 190


>gi|241557718|ref|XP_002400036.1| YrdC domain-containing protein [Ixodes scapularis]
 gi|215499737|gb|EEC09231.1| YrdC domain-containing protein [Ixodes scapularis]
          Length = 208

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 10/188 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L  G  +A+PT+T+YG+A  ++N  ++ +LY +K+R A  P+   V +   + +
Sbjct: 1   QAAADILRNGGIVALPTDTIYGVAALAQNSESVEKLYRLKRRDAGKPIAICVHNADEISR 60

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A V      L  LF PG +T V     T +++P           RVP   F +++    
Sbjct: 61  WAQVSIPEKLLHHLF-PGAVTAVFQ--RTRELNPKLNPLTPLVGVRVPNSDFIRQVTRCC 117

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLE---STIVNVQCEK 187
           G PLA+ SAN S ++S  +++     ++   +  + DGG +   GL    ST++N     
Sbjct: 118 GEPLALTSANVSSEMSTLSIQEF--QALWPHLDAVFDGGNLGYNGLNREGSTVINFSIPG 175

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 176 HFEIIRKG 183


>gi|226355747|ref|YP_002785487.1| translation factor (SUA5) [Deinococcus deserti VCD115]
 gi|226317737|gb|ACO45733.1| putative translation factor (SUA5) [Deinococcus deserti VCD115]
          Length = 214

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 16/206 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A   L  G  +A P+ETV+GLA   ++P A+ RLY +K R A  P+    + +  
Sbjct: 18  TAVHNAAAALLRGAVVAYPSETVWGLAAHPQHPQAVERLYALKGRAADKPVQVSCAGVDE 77

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK---TACFRVP-CGFTK 125
              +A   P    LA L WPGPLTLV      T   P   A L        RVP      
Sbjct: 78  ALHYAVPSPALSALAPL-WPGPLTLV------TAARPECPAYLAPHGQVGLRVPDHPVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L++  G  LA  S NRSG  +    +  ++S +   +  + DGG    G+ ST+V +  
Sbjct: 131 ALLQLSGGALATTSCNRSGLPAARTWEEAVTSGLGDLV--LPDGGHPAAGIASTVVLLPA 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELE 211
            +   ++R G +   TL++ + +  E
Sbjct: 189 GE---VVREGAVSAVTLRQLLVLHEE 211


>gi|256811084|ref|YP_003128453.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens
           AG86]
 gi|256794284|gb|ACV24953.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens
           AG86]
          Length = 207

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 12/201 (5%)

Query: 8   DSNALRKACEFLDA----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           D N  +K   FL      G  I   T+T+YG++ ++ +  A++++Y+IKKR    PL   
Sbjct: 13  DENERKKILNFLKEELLNGKIIICGTDTLYGISANALDENAVKKVYKIKKRDFNKPLSIC 72

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V +   ++K+A V+ L+  +   F PGPLT++L       I P   A       R+P   
Sbjct: 73  VKNKEEIEKYAYVNDLAKKIIDEFLPGPLTIIL---KKKPIIPDIVAK-DYIGIRIPDEA 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              + E    PL   SAN SG+ S T V+ I +  I K++  ++D G  K    STI+ +
Sbjct: 129 I--IRELSIVPLTTTSANISGEKSPTAVEEI-NPEILKKVDYVVDIGKCKYSKPSTIIKI 185

Query: 184 QCEKKVRILRPGGLEIETLKR 204
           + + K+  +R G + I  +K 
Sbjct: 186 E-DNKIIPIREGAIPISKIKE 205


>gi|297569512|ref|YP_003690856.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925427|gb|ADH86237.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 205

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L  G  I  PT+TVYG+  D  N  A++R+Y++K+RP   P     +D+  V 
Sbjct: 15  IKQVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKQRPLARPFSFICADLKDVS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V      + +   PGP T VL   +T  +  +     KT   R+P      +L+  
Sbjct: 75  TYAHVSNTGYRVLRKSLPGPYTFVLP--ATKLVPKIMMTKQKTVGIRMPDHRICMELVTG 132

Query: 131 YGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            G+P+   SA      +   +  + +     K++ LIID G       ST+V+++ +  +
Sbjct: 133 LGNPILTTSAAPDDPDARQLIHAYEVEERYGKQVDLIIDSGPLAHSSPSTVVSLE-DDDL 191

Query: 190 RILRPGGLEIETL 202
           ++LRPG   +E L
Sbjct: 192 QVLRPGKGSLEGL 204


>gi|52548883|gb|AAU82732.1| conserved hypothetical protein [uncultured archaeon GZfos19C7]
          Length = 224

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 8/178 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++ A   +  G  +  PTETVYGL  D+ +  A+R +Y+IK+R    P+   VS   M
Sbjct: 7   DQIKTATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRDLSRPISIAVSSFEM 66

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKL 127
           + + A +D     +     PGP+T+   LL   D+ P + TA  +    R P      ++
Sbjct: 67  LHEVADIDSECFEIIAELLPGPVTI---LLRKKDVVPAILTAASEVVGVRFPDNEIATRI 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLESTIVNV 183
           I+  G P+   SAN SG+   T ++ +      K   + +II+GG  K  + ST+V++
Sbjct: 124 IKETG-PITATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMPSTVVDM 180


>gi|150403108|ref|YP_001330402.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C7]
 gi|150034138|gb|ABR66251.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C7]
          Length = 206

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 16/213 (7%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+   I++SN       +  A + +  G  I   T+T+YGL+ ++ +  AI ++Y IK+R
Sbjct: 1   MKTFEISESNLKNCNDEIESARKMILDGKIILCGTDTLYGLSTNALDKKAIEKIYSIKER 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
               P+   + +   ++ +  VD  +  + + F PGP+T++   L   DI P        
Sbjct: 61  DPNKPISISLGEKDQIENYVYVDKPAKKIIEKFMPGPITVI---LKKKDIIP-DILGKND 116

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISK 173
              R+P     + I     PL   SAN SG+ +  +++ +   SI KE + LIID G  K
Sbjct: 117 VGVRIPDNDVIRKIAIV--PLTTTSANISGKTAPASLEEV--DSIIKEKVDLIIDTGPCK 172

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
             ++STIV V  + K+ ++R G +  E + R +
Sbjct: 173 YKVQSTIVKV-IDGKIELIREGKIPFEDILRTV 204


>gi|222825112|dbj|BAH22269.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Cadra
           cautella]
          Length = 195

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 7/182 (3%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PTETVY LA ++    +I ++Y IKKR    PL   VS+I  +   A V    + L   F
Sbjct: 18  PTETVYALACNALGKESIEKIYRIKKRSQNKPLSVFVSNIDSLINIAKVKEEYIDLINYF 77

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTAC-FRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145
            PGP+T +L L    D   L     K +   R+P       ++     P+   S N SG+
Sbjct: 78  SPGPMTYILPL---QDNSILPNEFFKDSIGIRIPDHPIAISILNELKTPVVATSINISGE 134

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205
            SI   + I   SI + +  +I+      G+ESTI+++  + K+++LR G + ++T+   
Sbjct: 135 KSICKARDI-PQSIKQHLSAVIEDDELVSGIESTIIDLTGD-KIKVLRKGKISLQTINNE 192

Query: 206 IS 207
            S
Sbjct: 193 FS 194


>gi|301614718|ref|XP_002936824.1| PREDICTED: uncharacterized protein ywlC-like [Xenopus (Silurana)
           tropicalis]
          Length = 243

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 9/195 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++LR     LD G    IPT+TVY LA   ++P AI R+Y IK+RP+  P+   +S++ 
Sbjct: 29  TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 88

Query: 69  MVKK-HASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122
            ++       PL      L +PG ++ ++   + L    + P         +   RVP  
Sbjct: 89  QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 148

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLAI SAN SG+   T+   ++ + +  ++  ++  G S   + ST+VN
Sbjct: 149 TVTAHLTDMTGPLAITSANPSGESDSTHHDMVI-TRLSDKLDAVLCDGFSNELVGSTVVN 207

Query: 183 VQ--CEKKVRILRPG 195
                E  ++ILR G
Sbjct: 208 CTKIDEGTIKILREG 222


>gi|315226266|ref|ZP_07868054.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens DSM
           10105]
 gi|315120398|gb|EFT83530.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens DSM
           10105]
          Length = 308

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L AG  + IPT+TVYG+  D R+   + R++E K RP    +    +D    +K   + 
Sbjct: 49  LLSAGHVVVIPTDTVYGIIADPRSQVGVGRIFEAKSRPRTKSVQILCADAPQAQKLGLIF 108

Query: 78  P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST---ANLKTACFRVPCGFTKKLIETYGH 133
           P +   L   F  G + LV  +    D   ++T      ++   R P G   + I  +  
Sbjct: 109 PQIYQDLLAEFPKGAVCLVCPV--KDDCQLVTTRQEKGYRSQAVRFPAGRQARAIIDFVG 166

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           P+A  SANRSG  S T V+  + + +   +PL +DGG +   + ST++++
Sbjct: 167 PVAASSANRSGDKSATTVQEAI-AELGGSVPLYLDGGATSGPVASTVISL 215


>gi|296126570|ref|YP_003633822.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira murdochii DSM
           12563]
 gi|296018386|gb|ADG71623.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira murdochii DSM
           12563]
          Length = 198

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 10/190 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A  +A + ++ G  +  PT+TVYG+  D+ N  A+ R+Y+IK+R    P +  + +    
Sbjct: 16  AADEASKVINEGGIVVSPTDTVYGMLADAFNKEAVERIYQIKEREKNKPFLILIKNAEYS 75

Query: 71  KKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           K  + ++ P    + K   PG LT ++ L  +   + L   N  T   RVP     +LI 
Sbjct: 76  KYFSQMEIP---DIVKKNIPGELTFIMPLSDSLKENFLYLKN--TVALRVPKDKYMQLIL 130

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG   I +  + L+     +  LII+ GI +  + ST+ N  C +  
Sbjct: 131 NNTKPLAAPSANPSGAGEILD-GNKLAELYEDKADLIINAGIIENKMPSTLYN--CIEN- 186

Query: 190 RILRPGGLEI 199
           +ILR G + +
Sbjct: 187 KILRQGSVHL 196


>gi|309800293|ref|ZP_07694466.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus infantis SK1302]
 gi|308116077|gb|EFO53580.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus infantis SK1302]
          Length = 159

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K RP    L  +V+ +  +   +   P
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDKKAVDHVYQLKCRPRDKALNLNVASLDDILNFSRNQP 68

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     +NL T  FR+P    T +LI  +G PL 
Sbjct: 69  TYLQQLVESFLPGPLTIILE--ANDKVPYWVNSNLTTVGFRMPSHPVTLELIREFG-PLI 125

Query: 137 IPSANRSGQISITNVKHIL 155
            PSAN SGQ S    + IL
Sbjct: 126 GPSANISGQSSGVTFRKIL 144


>gi|301614720|ref|XP_002936825.1| PREDICTED: uncharacterized protein ywlC-like [Xenopus (Silurana)
           tropicalis]
          Length = 243

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 9/195 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++LR     LD G    IPT+TVY LA   ++P AI R+Y IK+RP+  P+   +S++ 
Sbjct: 29  TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 88

Query: 69  MVKK-HASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122
            ++       PL      L +PG ++ ++   + L    + P         +   RVP  
Sbjct: 89  QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 148

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLAI SAN SG+   T+   ++ + +  ++  ++  G S   + ST+VN
Sbjct: 149 TVTAHLTDMTGPLAITSANPSGESDSTHHDMVI-TRLSDKLDAVLCDGFSNELVGSTVVN 207

Query: 183 VQ--CEKKVRILRPG 195
                E  ++ILR G
Sbjct: 208 CTKIDEGTIKILREG 222


>gi|294786662|ref|ZP_06751916.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens
           F0305]
 gi|294485495|gb|EFG33129.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens
           F0305]
          Length = 291

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 7/170 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L AG  + IPT+TVYG+  D R+   + R++E K RP    +    +D    +K   + 
Sbjct: 32  LLSAGHVVVIPTDTVYGIIADPRSQVGVGRIFEAKSRPRTKSVQILCADAPQAQKLGLIF 91

Query: 78  P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST---ANLKTACFRVPCGFTKKLIETYGH 133
           P +   L   F  G + LV  +    D   ++T      ++   R P G   + I  +  
Sbjct: 92  PQIYQDLLAEFPKGAVCLVCPV--KDDCQLVTTRQEKGYRSQAVRFPAGRQARAIIDFVG 149

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           P+A  SANRSG  S T V+  + + +   +PL +DGG +   + ST++++
Sbjct: 150 PVAASSANRSGDKSATTVQEAI-AELGGSVPLYLDGGATSGPVASTVISL 198


>gi|89898303|ref|YP_515413.1| translation factor SUA5 family protein [Chlamydophila felis
           Fe/C-56]
 gi|89331675|dbj|BAE81268.1| translation factor SUA5 family protein [Chlamydophila felis
           Fe/C-56]
          Length = 289

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 16/206 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A ++L  G  IA PT+TVYGL V    P A  ++Y +K+R      + +V+ I  ++
Sbjct: 16  LQQAEDYLHKGKVIAFPTDTVYGLGVALNYPNAEEQIYALKRRDRGKSFVVYVNTIEDIE 75

Query: 72  KHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128
           K +  ++   +L L++ F PGPLTL++D       H       +   FR+      +KLI
Sbjct: 76  KISGHNLSLSALKLSQKFLPGPLTLLVD-------HKNPRFTQEKLGFRILSLPIIEKLI 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G PL   SAN S        + ++     KE   +I G  +  GLESTIV+V     
Sbjct: 129 HITG-PLLGTSANISSFPPAITSEEVI-EDFSKEDLFVIPGKCT-YGLESTIVSVN---P 182

Query: 189 VRILRPGGLEIETLKRAISVELEYCV 214
           ++I R G + ++ ++  +  ++E C+
Sbjct: 183 LKIYREGIIPLQHIEEVLGEKIESCL 208


>gi|311113382|ref|YP_003984604.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa ATCC 17931]
 gi|310944876|gb|ADP41170.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa ATCC 17931]
          Length = 349

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 24/213 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A E L+A   I IPT+TVYG+A D+ +   + +L   K R    P    + D++
Sbjct: 15  TEAVEAAREALNAHETIVIPTDTVYGIACDAFSHQGVSKLLADKGRSRTMPPPVLIFDLA 74

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG- 122
            +   A   P  ++ L   FWPG LT++L        +P  T +L     T   RVP   
Sbjct: 75  ALAGVADEIPNDVYDLGNKFWPGALTIIL------YSYPSLTWDLGETQGTVAVRVPDDK 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----- 177
           F  KL+  +G PLA+ SAN++GQ +    +  L + + +++ L++D G      E     
Sbjct: 129 FALKLLTEHG-PLAVSSANKTGQPAAAKAEEAL-NQLGEDVTLVVDDGPRPAPQEDGSVG 186

Query: 178 ----STIVNVQCEKKVRILRPGGLEIETLKRAI 206
               STI++      V ++R G + +E L+  +
Sbjct: 187 DSKPSTILDCTSTPYV-VVREGAITVEELREVV 218


>gi|154509271|ref|ZP_02044913.1| hypothetical protein ACTODO_01796 [Actinomyces odontolyticus ATCC
           17982]
 gi|293189725|ref|ZP_06608441.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus
           F0309]
 gi|153798905|gb|EDN81325.1| hypothetical protein ACTODO_01796 [Actinomyces odontolyticus ATCC
           17982]
 gi|292821315|gb|EFF80258.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus
           F0309]
          Length = 224

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 12/208 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LI 61
           S+++++  R   E  D  L + +PT+TVYG+  D+ NP A+  +   K R    P   L+
Sbjct: 15  SLSEADLARAQRELRDGHL-LVVPTDTVYGIGADAANPEAVAAVLAAKGRGRQMPPPVLV 73

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             V  I ++     +   +  LA+ FWPG LTL+L   +  D+         T   R+P 
Sbjct: 74  ASVDAIDLL--CVDIPEAARALARAFWPGGLTLILR--ARPDLGWDLGETGGTIGVRMPN 129

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +L+  +G P+A+ SAN +GQ   T+V+  +       +   +DGG ++    S+I
Sbjct: 130 QAALLRLLHDFG-PMAVTSANLTGQPPATSVEQAV-GYFGTRVSAYLDGGPTQGSTASSI 187

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV 208
           V+   E   R+LR G + ++ L  A  V
Sbjct: 188 VDFAHETP-RVLRFGTISLDDLSAAAGV 214


>gi|134046516|ref|YP_001098001.1| translation factor SUA5 [Methanococcus maripaludis C5]
 gi|132664141|gb|ABO35787.1| translation factor SUA5 [Methanococcus maripaludis C5]
          Length = 205

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 14/212 (6%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+   I++SN       +  A + +  G  I   T+T+YGL+ ++ +  AI R+Y IK+R
Sbjct: 1   MKTFEISESNLKNCNEEIETAKKMILGGKIILCGTDTLYGLSTNALDKKAIERIYSIKER 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
               P+   + +   ++ +  V   +  + + F PGP+T++   L   DI P        
Sbjct: 61  DPNKPISISLGEKKQIENYVYVGETAKKIIEKFMPGPITVI---LKKKDIIP-DILGKDD 116

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              R+P     + I     PL   SAN SG+ +  +++ +  S I +++ LIID G SK 
Sbjct: 117 VGVRIPDNDVIRKIAIV--PLTTTSANISGKTAPISLEEV-DSVIKEKVDLIIDTGPSKY 173

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            ++STIV V    K+ ++R G +  E + +++
Sbjct: 174 KVQSTIVKV-IGGKIELIREGKIPFEEILKSV 204


>gi|221194923|ref|ZP_03567979.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium rimae ATCC 49626]
 gi|221184826|gb|EEE17217.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium rimae ATCC 49626]
          Length = 217

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 94/200 (47%), Gaps = 12/200 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           S  + +A E   AG  + +PT++VYG+  A  S NP    R++ IK R     L   V  
Sbjct: 14  SAVIAQAVEVARAGGVLIVPTDSVYGIGAAAFSNNP-GHERIFTIKHRDRTQTLPWLVGK 72

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            S   ++A   P  +  L K +WPG LTLV+    T     +   N  T   R+P     
Sbjct: 73  KSDFDRYAKDAPAWAYRLVKAYWPGALTLVVKAADTVPDEYVLPQN-HTIALRMPASKLV 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSI-CKEIPLIIDGGISKIGLESTIVNV 183
            ++I   G PLA  SAN  G  S  + K +    I C +  LI+DGG + + + STIV+ 
Sbjct: 132 CEIINGLGVPLATTSANIHGNPSAVSEKDVEQELIDCSD--LILDGGPAPLAVASTIVD- 188

Query: 184 QCEKKVR-ILRPGGLEIETL 202
            C  K   ILR G +  E L
Sbjct: 189 -CTSKTPCILREGAIPTEAL 207


>gi|153802780|ref|ZP_01957366.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-3]
 gi|124121693|gb|EAY40436.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-3]
          Length = 188

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +      + D L+  LA   WP PLT V+   ++ D          T   RV      +
Sbjct: 67  PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTSSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|46198747|ref|YP_004414.1| sua5 protein [Thermus thermophilus HB27]
 gi|55980762|ref|YP_144059.1| hypothetical protein TTHA0793 [Thermus thermophilus HB8]
 gi|46196370|gb|AAS80787.1| sua5 protein [Thermus thermophilus HB27]
 gi|55772175|dbj|BAD70616.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 195

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 17/203 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M      AL KA E L  G  +A PT+TV+G+     +  A +R+YE+K RP   PL   
Sbjct: 1   MERVYQEALAKAAETLKGGGLVAFPTDTVWGVLALMEDEAACKRIYEVKGRPEDKPLQVL 60

Query: 64  VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           V+D+    +   + PL    L LA+ FWPG LT+V   +    I P  + +  +   R+P
Sbjct: 61  VADLESALELVDLGPLEGKFLRLAEAFWPGGLTVV---VPGKAIPPWISKD-GSVGLRMP 116

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++L+   G   A  S N+SG+  +       + ++    P          GL S+
Sbjct: 117 DHALLRELLRRVGGHAAATSLNKSGEPPVRTEAEARTFAVDFVFP------GEAGGLASS 170

Query: 180 IVNVQCEKKVRILRPGGLEIETL 202
           +V+++  +   +LR G +  E L
Sbjct: 171 VVDLRTGE---VLREGAIPKEAL 190


>gi|281349712|gb|EFB25296.1| hypothetical protein PANDA_013165 [Ailuropoda melanoleuca]
          Length = 187

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 16/174 (9%)

Query: 31  TVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPG 90
           T+YGLA  +    A+  +Y +K R    PL   +  ++ V ++  V  +   L K   PG
Sbjct: 1   TLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVADVYRYCHVR-VPEGLLKDLLPG 59

Query: 91  PLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147
           P+TLVL+       D++P +         R+P   F + L++ +G PLA+ SAN S Q S
Sbjct: 60  PVTLVLERSEELNKDLNPFT----PLVGIRIPDHAFIQDLVQVFGGPLALTSANLSSQAS 115

Query: 148 ITNVKHILSSSICKEIPLIIDGGISKIG------LESTIVNVQCEKKVRILRPG 195
             NV+      +  ++ L+IDGG    G      L ST+V++    K  I+RPG
Sbjct: 116 SLNVEEF--QDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGKFGIIRPG 167


>gi|327284453|ref|XP_003226952.1| PREDICTED: hypothetical protein LOC100555097 [Anolis carolinensis]
          Length = 499

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 20/189 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PT+TVYG+A  + +  A+  LY +K R    PL   + D+ ++ +   V      L 
Sbjct: 96  VALPTDTVYGVACLAEDSRALEALYRLKGRDPGKPLAVCLPDLDVLHRFCKVQVPEGLLQ 155

Query: 85  KLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSAN 141
            L  PGP+TLVL+       D++P +         R+P   F ++L      PLA+ SAN
Sbjct: 156 DLL-PGPVTLVLERSEALNPDLNPFT----PLVGVRIPNHWFARELARICAAPLALTSAN 210

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGG--------ISKIGLESTIVNVQCEKKVRILR 193
            S + S  +V       +   + L++DGG         S++G  ST+V++    K R++R
Sbjct: 211 PSHKGSTLDVTEF--QELWPHLSLVVDGGPLGDTHSPESRLG--STVVDLSVPGKFRVIR 266

Query: 194 PGGLEIETL 202
           PG    +TL
Sbjct: 267 PGCALSQTL 275


>gi|332522804|ref|ZP_08399056.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314068|gb|EGJ27053.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 197

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 10/199 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    ++ G  + +PTETVYGL   + +  A+  +Y +K+RP    +  +V+D   + 
Sbjct: 1   MDKLKSIIENGGALVLPTETVYGLFAKAMDEQAVNMVYTLKQRPREKAMNLNVADYQAIL 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLI 128
            ++   P  L  L   F PGPLT++   L   D  P    + K T  FR+P    T++LI
Sbjct: 61  DYSKDQPTYLKELYDAFLPGPLTII---LKANDRVPFWINSGKDTVGFRLPKHPVTEQLI 117

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G PL  PSAN SG+ S      I+ +   +      D  ++  G +STI+++    K
Sbjct: 118 RIAG-PLIGPSANLSGRQSGCQYAEIIKAFHNRVEGYEDDQSLT--GQDSTIIDLSG-PK 173

Query: 189 VRILRPGGLEIETLKRAIS 207
            +ILR G +    ++  IS
Sbjct: 174 AKILRQGSISAADIQTKIS 192


>gi|39938501|ref|NP_950267.1| translation factor [Onion yellows phytoplasma OY-M]
 gi|39721610|dbj|BAD04100.1| translation factor [Onion yellows phytoplasma OY-M]
          Length = 185

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+TVYG+     +   +  +Y+IKKRP    ++   + +   KK     P SL LA
Sbjct: 7   IIFPTDTVYGMGAKLYDKKGLNCIYQIKKRPLNKSIVVLCASLQQAKKLVQFSPQSLKLA 66

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
             FWPGPLTL+L     T +   S    KT   R+P       I     PL   S N+S 
Sbjct: 67  LHFWPGPLTLILP----TTLKYFSKTKAKTLGIRIPNHPLALEILKKNGPLKTTSVNQSN 122

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
              + + + I +    K + LI       + + STIV++   + V ILR G +  E
Sbjct: 123 HPPLNDYQTIFNIYYNK-VALIYQNYHPILKISSTIVDLTTFQPV-ILRQGTITQE 176


>gi|296160300|ref|ZP_06843118.1| SUA5/yciO/yrdC domain protein [Burkholderia sp. Ch1-1]
 gi|295889511|gb|EFG69311.1| SUA5/yciO/yrdC domain protein [Burkholderia sp. Ch1-1]
          Length = 203

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 87/197 (44%), Gaps = 17/197 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L  G  + +PT+T Y  A D  N  A  RLYEIKKR    PL   VS    + 
Sbjct: 4   IEHAATILKNGGVLMVPTDTNYAFAADPWNVEACARLYEIKKRDVKKPLTLFVSRPEDLW 63

Query: 72  KHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKK 126
            +A V          L    WPGPL  VL        HP L   ++   C R P      
Sbjct: 64  VYAEVPDAQTEAVNSLMARHWPGPLNFVLKKSPAAPNHPYLKEDSISVVCNRNPV--LNG 121

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID------GGISKIGLESTI 180
           LI  +G PLA+ SAN SG    + + + L+S   +  P  +D      G + +    STI
Sbjct: 122 LINLFGRPLAMTSANVSGVEHDSLIDYELAS---RTFPDAVDYIVPPGGMVPQTTRSSTI 178

Query: 181 VNVQCEKKVRILRPGGL 197
           +++  +  +++LR G +
Sbjct: 179 ISL-LDGTLKVLRQGDV 194


>gi|118580209|ref|YP_901459.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter propionicus DSM
           2379]
 gi|118502919|gb|ABK99401.1| translation factor SUA5 [Pelobacter propionicus DSM 2379]
          Length = 202

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  + L  G  IA PT+T YG+     N   I R+Y +K+R    P      ++S V + 
Sbjct: 17  RVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHKKPFSFICPNLSEVARF 76

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           A V   +  + K + PGP T VL+  +T D+  L     KT   R+P      ++++  G
Sbjct: 77  ARVSNTAFKILKRYLPGPYTFVLE--ATRDVPDLLLTRQKTVGIRIPDNRICLEIVQMLG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            P+   SAN SG     N   I       ++ +++DGGI
Sbjct: 135 SPIVTTSANLSGDEPTGNPGFI-DEIFGHQLDIVVDGGI 172


>gi|183600716|ref|ZP_02962209.1| hypothetical protein PROSTU_04312 [Providencia stuartii ATCC 25827]
 gi|188019696|gb|EDU57736.1| hypothetical protein PROSTU_04312 [Providencia stuartii ATCC 25827]
          Length = 189

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  IA PTE V+GL  D  +  A+ +L E+K+RP    LI    +   +K +     
Sbjct: 16  LNKGEVIAYPTEAVFGLGCDPDSEQAVNKLLELKQRPWEKGLILIADNYEQLKDYVDDSQ 75

Query: 79  LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           L+    +     WPGP+T V+   S+T      T    T   RV   G  K+L   YG P
Sbjct: 76  LTDEQKQTMFASWPGPVTWVIPAKSST--PKWLTGRFDTLAVRVTDHGLVKELCREYGKP 133

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           L   SAN SGQ        +L       IP ++DG
Sbjct: 134 LVSTSANLSGQEPCRTTNEVL-EQFKGSIP-VLDG 166


>gi|325831973|ref|ZP_08165070.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. HGA1]
 gi|325486294|gb|EGC88746.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. HGA1]
          Length = 202

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVS 65
           S++ R+A   L  G  +  PTETVYGL V      +   LY++K+R    P   L+  V 
Sbjct: 5   SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+     H  V  L+  LA+ +WPGPLTL+++          S A   +   R+P   T 
Sbjct: 65  DLDRYGAH--VPDLARRLARAYWPGPLTLIVEAGDAVPAAFRSAAG--SIGLRMPDNDTA 120

Query: 126 -KLIETYGHPLAIPSANRSG 144
            +LIE  G PLA  SAN SG
Sbjct: 121 LELIEAVGCPLATTSANISG 140


>gi|302338452|ref|YP_003803658.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635637|gb|ADK81064.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 191

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 19/201 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  D N L    E L  G P+ +P +T+YG+      P + +++  +K R   NP +  
Sbjct: 5   ISKDDPNLLDVLTEVLFRGEPVIMPCDTMYGIV--GIVPASEKKIRALKDRLETNPFL-Q 61

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           + + S++ +      +   L + +WPG LTL+LD +              T   R+P   
Sbjct: 62  LINFSLLPRVVR-GKVPARLMR-YWPGALTLILDAVEG-----------GTVGVRIPDDE 108

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++ IE  G PL   S N+SGQ +I  ++ I+ +     + LI+D GI   G  STI+N
Sbjct: 109 LLQRCIERVGMPLYSTSVNKSGQPNINAIEEIV-ALFGSRVELIVDAGIMGQGQASTIIN 167

Query: 183 VQCEKKVRILRPGGLEIETLK 203
            + E  V +LR G + ++ +K
Sbjct: 168 ARSEPYV-LLRQGAVCVDGIK 187


>gi|308233417|ref|ZP_07664154.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Atopobium vaginae DSM 15829]
 gi|328944391|ref|ZP_08241853.1| protein-(glutamine-N5) methyltransferase [Atopobium vaginae DSM
           15829]
 gi|327490975|gb|EGF22752.1| protein-(glutamine-N5) methyltransferase [Atopobium vaginae DSM
           15829]
          Length = 526

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 16/210 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           D   + KA + L     I  PT++VYG+  V   +  A +R +EIK R     L   + D
Sbjct: 324 DPQIIDKAVDVLAHEGVIITPTDSVYGIGCVALPHNAAHKRTFEIKHRDLRQTLPWLIGD 383

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVP-C 121
            S + ++A  V   +  LA  FWPG LTLV+   D +    +H    A+ KT   R+P  
Sbjct: 384 ESDLMRYAVDVPAWAQKLAHTFWPGALTLVVKACDDVPQEYVH----ADNKTIALRLPDS 439

Query: 122 GFTKKLIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
              + L      PLAI SAN  G   +I+     L   +  E+ L++D G + + + STI
Sbjct: 440 NVVRALARKLSCPLAITSANTHGADAAISGAT--LEDRLIDEVDLVLDAGSAPLAVASTI 497

Query: 181 VNVQCEKKV-RILRPGGLEIETLKRAISVE 209
           V+  C +   +ILR G ++   +  A+S +
Sbjct: 498 VD--CTQSTPKILRIGAIDPHDIMEALSAQ 525


>gi|317488503|ref|ZP_07947054.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. 1_3_56FAA]
 gi|316912435|gb|EFV33993.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. 1_3_56FAA]
          Length = 202

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVS 65
           S++ R+A   L  G  +  PTETVYGL V      +   LY++K+R    P   L+  V 
Sbjct: 5   SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+     H  V  L+  LA+ +WPGPLTL+++          S A   +   R+P   T 
Sbjct: 65  DLDRYGAH--VPDLARRLARAYWPGPLTLIVEAGDAVPAAFRSAAG--SIGLRMPDNDTG 120

Query: 126 -KLIETYGHPLAIPSANRSG 144
            +LIE  G PLA  SAN SG
Sbjct: 121 LELIEAVGCPLATTSANISG 140


>gi|307186184|gb|EFN71890.1| YrdC domain-containing protein, mitochondrial [Camponotus
           floridanus]
          Length = 248

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + L  G  IAIPT+T+YGLA  + NP A++RLYEIK+R    PL   +S++  +    
Sbjct: 41  AAQLLQQGKIIAIPTDTIYGLAGVAVNPLAVQRLYEIKRRDGSKPLAICLSNVKEIGTWG 100

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            +D +   + +   PGP T+ L    T+ +        +T   RVP   F + + +  G 
Sbjct: 101 VLDDVPSGMLECLLPGPCTICLR--RTSALPKSFNPGQETVGIRVPDNKFVRSVAKIVG- 157

Query: 134 PLAIPSANRSGQIS 147
           PLA+ SAN S + S
Sbjct: 158 PLALTSANISSEPS 171


>gi|294138840|ref|YP_003554818.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12]
 gi|293325309|dbj|BAJ00040.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12]
          Length = 185

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 83/182 (45%), Gaps = 15/182 (8%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E ++ G  IA PTE VYGL  D  N  AI +L  +K+RP    LI   SD S +  +   
Sbjct: 11  EVIENGGVIAYPTEAVYGLGCDPDNDVAIEKLLALKQRPWQKGLILVASDYSQIAPYLDD 70

Query: 77  DPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
             L+   L  A   WPGP T ++ + S  DI  L   N  +   RV      + +    G
Sbjct: 71  TQLTEKQLAFAFSKWPGPFTFIMPIRS--DISKLLCGNFNSLAVRVSAHPGIQAICNKLG 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLE---STIVNVQCEKK 188
            PL   SAN +GQ    +V       +  +   +I G ++ K+G E   STI++    K 
Sbjct: 129 KPLVSTSANITGQQPAMSVDE-----VTMQFEGVIAGVVTGKLGCEANPSTIIDALSGKV 183

Query: 189 VR 190
           +R
Sbjct: 184 LR 185


>gi|322799894|gb|EFZ21035.1| hypothetical protein SINV_05462 [Solenopsis invicta]
          Length = 239

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G  IA+PT+TVYGLA  + +  AI+RLYEIK+R    PL   +S++  V    
Sbjct: 36  AAEMLRQGKVIALPTDTVYGLACLATDTCAIQRLYEIKRRDEGKPLAICLSNVKEVGTWG 95

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
            +D +  ++ +   PGP T+ L    T  ++      + T   RVP     + +     P
Sbjct: 96  ILDDIPANMLEQLLPGPYTICLR--RTPALNRALNPGVDTVGIRVPDNKFIRSVAQIAGP 153

Query: 135 LAIPSANRSGQISITN 150
           LA+ SAN S + S  N
Sbjct: 154 LALTSANVSSEPSSLN 169


>gi|262191286|ref|ZP_06049480.1| YrdC family protein [Vibrio cholerae CT 5369-93]
 gi|262032824|gb|EEY51368.1| YrdC family protein [Vibrio cholerae CT 5369-93]
          Length = 188

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +      + D L+  LA   WP PLT V+   ++ D          T   RV      +
Sbjct: 67  PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQRACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|323342352|ref|ZP_08082584.1| hypothetical protein HMPREF0357_10765 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463464|gb|EFY08658.1| hypothetical protein HMPREF0357_10765 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 215

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 21/201 (10%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            + +  G  +AI T+TVYGLA  S + +  ++L + K+RP   P    V  +  ++  A 
Sbjct: 28  AQMIQEGGLVAIMTDTVYGLAASSADGSLYQKLKDAKERPENKPFPLMVGSLDQIESVAE 87

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           +     HL K F PG +T + ++     + P    + +T   R+    + + +I   G+P
Sbjct: 88  LTDRDRHLMKTFMPGAVTFIFNIKDG--VFPF-LGDQRTIGIRMADDIWVQDIINKVGYP 144

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEK 187
           + +PSANRSG  +  +   ++           +DG I  +       G+ S++ ++  + 
Sbjct: 145 IWLPSANRSGFDTAISSDMVIDQ---------LDGRIEGVVLGECVGGVSSSVFDITGD- 194

Query: 188 KVRILRPGGLEIETLKRAISV 208
           +++ LR G + +E + + + +
Sbjct: 195 EIKCLRQGVITLEEINKEVGL 215


>gi|327482964|gb|AEA77371.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3894-4]
          Length = 185

 Score = 68.9 bits (167), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 4   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 63

Query: 72  KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +      + D L+  LA   WP PLT V+   ++ D          T   RV      +
Sbjct: 64  PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 120 KLCLAFGKPLTSTSANLSGQRACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 176

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 177 -RSLQVLRQG 185


>gi|147919401|ref|YP_686860.1| YrdC family translation factor [uncultured methanogenic archaeon
           RC-I]
 gi|110622256|emb|CAJ37534.1| putative translation factor (YrdC family) [uncultured methanogenic
           archaeon RC-I]
          Length = 192

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 28/199 (14%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + +  G  IA PTETVYG+   + +  AI R++++K+RP   PL   VS I M+++ A
Sbjct: 10  AADIILKGGVIAYPTETVYGIGALATDVKAISRVFKVKRRPESMPLSIAVSSIEMLQEVA 69

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCGFTKKLIETYGH 133
            +  +     + F PGP+T++   L    + P S TA       R P            H
Sbjct: 70  EI--VHPDFIEKFLPGPVTVI---LRKKPVLPDSLTAGSDYVGIRFP-----------DH 113

Query: 134 PLAIPSANRSGQISITNV------KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           P+A+    R+G I  T+         + +  +  E+  +++GG +K    STIV++   +
Sbjct: 114 PVALDLIRRTGPIVSTSANLHGEPDPVTADEVTVEVDYLLEGGRAKYAGSSTIVDL---R 170

Query: 188 KVRILRPGGL--EIETLKR 204
           + ++LR G +  E+E   R
Sbjct: 171 EYKVLRKGAMYDEVEEYMR 189


>gi|85057289|ref|YP_456205.1| translation factor SUA5 protein [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789394|gb|ABC65126.1| translation factor SUA5 protein [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 196

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 8/183 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+TVYG+     +   +  +Y+IKKRP    ++   S +   KK     P +L LA
Sbjct: 7   IIFPTDTVYGMGAKLYDKKGLNYIYQIKKRPLNKSIVVLCSSLQQAKKLVQFSPQNLKLA 66

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
             FWPGPLT VL   S       S    KT   R+P    T ++++  G PL   S N+S
Sbjct: 67  LHFWPGPLTFVLPTTSKY----FSKTKEKTLGVRIPNHPLTLEILKKNG-PLKTTSVNQS 121

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
               + + + I +    K + LI       + + STIV++   + V ILR G +  E + 
Sbjct: 122 NHPPLNDYQTIFNIYHNK-VALIYKNYHPILKISSTIVDLTTFQPV-ILRQGTITQEEIS 179

Query: 204 RAI 206
             I
Sbjct: 180 SQI 182


>gi|153826414|ref|ZP_01979081.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-2]
 gi|149739800|gb|EDM53995.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-2]
          Length = 188

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA++RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMQRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +  VD   L   +L      WP PLT V+   ++ D          T   RV      +
Sbjct: 67  PY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|84494536|ref|ZP_00993655.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649]
 gi|84384029|gb|EAP99909.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649]
          Length = 260

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 7/209 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + KA   +  G  + +PT+T+YG+  D+ +P A++RL + K R    P    V ++  
Sbjct: 15  DGIAKATAGVRQGDLVVLPTDTLYGIGADAFSPDAVQRLLDAKGRGREMPPPVLVPEVRT 74

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
           V   A+  P  +  L + +WPGPLTLV     +       T    T   R+P      +L
Sbjct: 75  VDGLATDVPAYARALIERYWPGPLTLVFKAQPSLMWDLGDTGG--TVAVRMPDNEVALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+A+ SANR+GQ +   +    ++ +   +   +DGG    GL STIV+     
Sbjct: 133 LKEVG-PMAVSSANRTGQPASRTIIDA-ATQLGASVEFYLDGGPVTGGLASTIVDC-THP 189

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDE 216
           +  ILR G ++ + +    +  LE   +E
Sbjct: 190 EPTILRRGAIDADEIMALANQHLELPPEE 218


>gi|332671311|ref|YP_004454319.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484]
 gi|332340349|gb|AEE46932.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484]
          Length = 222

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 5/193 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +A   +  G  + +PT+TVYG+  D+  P A++ L + K R    P    + D+  +
Sbjct: 17  AIDEAVAAVSRGALVVLPTDTVYGIGADAFTPPAVQALLDAKGRGRQMPPPVLIPDVRTL 76

Query: 71  KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
              A+  P +   LA+ FWPG LTL++    +     L   N  T   RVP   T   + 
Sbjct: 77  DGLATDVPDAARALAEAFWPGGLTLIVHAQPSLAWD-LGETN-GTVALRVPDHPTALALL 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A+ SANR+G  +    +    + +   + + +D G +   + STIV+   +  +
Sbjct: 135 RRTGPMAVSSANRTGSPAAVTAQDA-HAQLGDSVAVYLDAGDAPGQVASTIVDATGD-VL 192

Query: 190 RILRPGGLEIETL 202
           R++R G L +E L
Sbjct: 193 RLVRAGALTLEQL 205


>gi|255326263|ref|ZP_05367349.1| translation factor SUA5 [Rothia mucilaginosa ATCC 25296]
 gi|255296717|gb|EET76048.1| translation factor SUA5 [Rothia mucilaginosa ATCC 25296]
          Length = 395

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A E L A   I +PT+TVYG+A D+ +   + +L   K R    P    + D++ 
Sbjct: 16  EAIEAAREALKAHDTIVMPTDTVYGIAADAFSHQGVAKLLADKGRDRTMPPPVLIFDLAA 75

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-F 123
           +       P  ++ L   FWPG LT++L        +P  + +L     T   RVP   F
Sbjct: 76  LAGVVDDVPDDIYDLGGRFWPGALTMIL------HAYPSLSWDLGETRGTVAVRVPDDEF 129

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
             KL+  +G PLA+ SAN++GQ +  + +  +  S+ +++ ++IDGG     LES
Sbjct: 130 ALKLLTEHG-PLAVSSANKTGQEAALDAQTAM-DSLGEDVAVVIDGGARPKPLES 182


>gi|240169513|ref|ZP_04748172.1| hypothetical protein MkanA1_09381 [Mycobacterium kansasii ATCC
           12478]
          Length = 219

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ +  A   L AG  + +PT+TVYG+A D+ + +A+  L   K R    P+   V    
Sbjct: 16  SSGITAAVAALKAGRLVVMPTDTVYGVAADAFDRSAVDALLAAKGRGRDMPVGVLVGSWH 75

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++    SV P +  L + FWPG L+LV+ + + +    L  A   T   R+P      +
Sbjct: 76  TIEGLVYSVPPGARELIRAFWPGALSLVV-VQAPSLQWDLGDAR-GTVMLRMPLHPVAIE 133

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PLA+ SAN SGQ +  +        +   + + +DGG +     STIV++   
Sbjct: 134 LLREVG-PLAVSSANVSGQPAAVDAGEA-RRQLGDRVDVYLDGGPAAQQAASTIVDLTGA 191

Query: 187 KKVRILRPGGLEIETLKRAISVEL 210
              RILRPG +  E +   + V++
Sbjct: 192 TP-RILRPGPVSAERIAEVLGVDV 214


>gi|296128917|ref|YP_003636167.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM
           20109]
 gi|296020732|gb|ADG73968.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM
           20109]
          Length = 236

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 17/210 (8%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I  +TD      A+ +A   +  G  + +PT+TVYG+  D+ +  A++ L + K R   
Sbjct: 5   RIKDVTDPATWGPAVDEAVHAVGRGELVVLPTDTVYGIGADAFDARAVQALLDAKGRGRQ 64

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL---- 112
            P    + D+  +   A+  P ++  LA+ FWPG LT++L         P    +L    
Sbjct: 65  MPPPVLIPDVRTLDGLATDVPDAVRALAETFWPGGLTVIL------RAQPSLAWDLGETH 118

Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
            T   R+P       +     PLA+ SANR+G+             +   + + +DGG +
Sbjct: 119 GTVALRMPDHPAALALLRRTGPLAVSSANRTGR-PAATTAAEAHEQLGDAVAVYLDGGTA 177

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETL 202
             G+ STIV+   +  +R++R G L++ TL
Sbjct: 178 PGGVASTIVDATGD-ALRVVRLGALDLATL 206


>gi|295099926|emb|CBK89015.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cylindroides T2-87]
          Length = 203

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 95/183 (51%), Gaps = 15/183 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IAIPT+TVYG+ V   +  A+  L   K RP   P+   VS +  ++  A +D  +  +A
Sbjct: 22  IAIPTDTVYGVGVMYGDLDALHNLKHAKHRPETKPIPMMVSKLEQLEGIAIIDERTKVIA 81

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           K F PG LTLVL +    D        L+T   R+P   F   LI+    PL + SAN+S
Sbjct: 82  KHFLPGALTLVLPVDPRLDKS--YNNGLETIAIRIPDEEFVLSLIDELDTPLLVTSANQS 139

Query: 144 GQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKK-VRILRPGGLEI 199
           G  + T +K+     + +++P  IDG   G  +    STIV+  C K+ ++ILR G + +
Sbjct: 140 G--APTALKY---EDVLEQLP-NIDGIVLGKCRALQASTIVD--CTKEDLKILREGPISL 191

Query: 200 ETL 202
           E L
Sbjct: 192 EEL 194


>gi|256827626|ref|YP_003151585.1| Sua5/YciO/YrdC/YwlC family protein [Cryptobacterium curtum DSM
           15641]
 gi|256583769|gb|ACU94903.1| Sua5/YciO/YrdC/YwlC family protein [Cryptobacterium curtum DSM
           15641]
          Length = 220

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 5/194 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +    L AG P+  PT+TVYG+ V      + + +Y+ K+R    P+   V  I  + 
Sbjct: 26  LERTVAALRAGYPVIFPTDTVYGIGVSVDAAESPKAIYQAKERDLSKPVAWLVDSIEALD 85

Query: 72  KHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
            +    P + H      WPGPLTLV+   ++  +    T+   T   R+P     ++LI 
Sbjct: 86  VYGDAVPAAAHALAHAQWPGPLTLVVK--ASERVPAAFTSTAGTIGLRMPNHAIARELIR 143

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A  SAN S   S    + I  +   K + ++ D      G+ ST+V+      +
Sbjct: 144 RLGCPIATSSANISAHPSTAYAQGIDPALSDKVVAVLADDSQGASGISSTVVDC-TSSPL 202

Query: 190 RILRPGGLEIETLK 203
           RILR G +    ++
Sbjct: 203 RILREGSISAADVR 216


>gi|153830131|ref|ZP_01982798.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 623-39]
 gi|148874395|gb|EDL72530.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 623-39]
          Length = 188

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +      + D L+  LA   WP PLT V+   ++ D          T   RV      +
Sbjct: 67  PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|226227089|ref|YP_002761195.1| hypothetical protein GAU_1683 [Gemmatimonas aurantiaca T-27]
 gi|226090280|dbj|BAH38725.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 224

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 89/209 (42%), Gaps = 22/209 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGL--AVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +LR     L AG  +A PTETVYG   AVD     ++  L  +K RP   P +  + D  
Sbjct: 20  SLRDTILHLGAGRVLAYPTETVYGFGTAVDH---DSVEALVRMKGRPPGKPFLLLIGDPG 76

Query: 69  MVKKHASVDPLSLHL-------AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V +      L LHL       A  FWPGPLTLVL                  A    P 
Sbjct: 77  QVAR------LDLHLPTYAAQLAARFWPGPLTLVLRGGDQRVPARARGPEGGVAVRWTPH 130

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS---SSICKEIPLIIDGGISKIGLES 178
              ++L+  YG P+   SANR           I++   + I +    ++DGG       S
Sbjct: 131 PGLQRLLTAYGEPITSTSANRPRVPPAMTASEIVTQWPAEIHRGTLRVLDGGRLAPSDSS 190

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           T+V+    ++ R++RPG L    L+  ++
Sbjct: 191 TVVDC-TGRRARVIRPGALPAPLLRTCVA 218


>gi|170697613|ref|ZP_02888702.1| SUA5 domain protein [Burkholderia ambifaria IOP40-10]
 gi|170137500|gb|EDT05739.1| SUA5 domain protein [Burkholderia ambifaria IOP40-10]
          Length = 241

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 30/205 (14%)

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LRP
Sbjct: 42  VAAPSANRFGHVSPTTAQHVRDE--FGDTVHVLDGGASEVGIESTILDL-SRGFPALLRP 98

Query: 195 GGLE----IETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           G +      + L RA    L    D T+ P++ G LK+HYAPR+ + L      P +AL 
Sbjct: 99  GHVTPRQIADVLGRA--PRLPDGGDATA-PRASGTLKAHYAPRTPLAL-----MPFDALE 150

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLFNYMKIADDSGAS 295
                   + E   +    S+ G+  +A               A +L+  ++  D +  +
Sbjct: 151 PLLAAAQTDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVA 210

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I    +P     IA+N+RL RAAA
Sbjct: 211 RILVEKLPETVEWIAVNDRLGRAAA 235


>gi|68536429|ref|YP_251134.1| hypothetical protein jk1344 [Corynebacterium jeikeium K411]
 gi|68264028|emb|CAI37516.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 219

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 13/203 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL  A   +  G  + +PT+TVYG+  D+ +  A+  L   K R    P+   V   + +
Sbjct: 16  ALDTAANAVKGGRLVVLPTDTVYGIGCDAFDNEAVAALLRAKGRGPDMPVPVLVPSWTTI 75

Query: 71  KKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTK 125
           +    V   + ++ KL   FWPG L++V+    +    P +  + + T   R+P      
Sbjct: 76  Q--GLVREYTYNMRKLVEAFWPGGLSMVVHQAPSL---PWNLGDTRGTVMLRMPNQPIAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L+E  G P+A+ SAN SGQ   TNV+ +    +  ++   IDGG +  G+ STIV++  
Sbjct: 131 ELLERTG-PMAVSSANISGQPPATNVQ-MAEDQLGADVTTYIDGGEAHHGVASTIVDLSS 188

Query: 186 EKKVRILRPGGLEIETLKRAISV 208
            +  RILR G    E +   + +
Sbjct: 189 GRP-RILREGAATTERVAEVLGM 210


>gi|94984865|ref|YP_604229.1| Sua5/YciO/YrdC/YwlC [Deinococcus geothermalis DSM 11300]
 gi|94555146|gb|ABF45060.1| Sua5/YciO/YrdC/YwlC [Deinococcus geothermalis DSM 11300]
          Length = 208

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 15/198 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+ +A E + AG  +  PTETV+GLA       A  RLY +K R    P+     D  
Sbjct: 12  AQAVARAAERVTAGGVVGYPTETVWGLAARLE---ASERLYALKGREPDKPVQVSCLDEE 68

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVPCGFTKK 126
             ++          LA L WPGPLTLVL   S    D+ P     L+     V       
Sbjct: 69  TARRLTEAGAAFDALAGL-WPGPLTLVLPASSACPPDLAPGGWVGLRVPDHPV----ALA 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNVQC 185
           L+   G  LA  S N SGQ +    +   +  +    PL++ DGG    GL ST+V V  
Sbjct: 124 LLRACGGLLATTSLNPSGQPAARTFEEAQAYGLA---PLLLPDGGFPAQGLASTVVRVVG 180

Query: 186 EKKVRILRPGGLEIETLK 203
           + ++ +LR G L ++ L+
Sbjct: 181 D-ELEVLREGALPVQLLR 197


>gi|261213222|ref|ZP_05927504.1| YrdC family protein [Vibrio sp. RC341]
 gi|260837496|gb|EEX64199.1| YrdC family protein [Vibrio sp. RC341]
          Length = 185

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   ++   ++
Sbjct: 4   LQQAVDVLQRGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63

Query: 72  KHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   D L+   L ++   WP PLT V+   ++ D          T   RV      ++L
Sbjct: 64  PYIDEDQLTEQQLLQVLASWPAPLTWVMP--ASVDTPSWVRGQFDTVAVRVSNHPLVQQL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN SGQ + T  + ++ + +  +I  +++G  S     S I +    +
Sbjct: 122 CLAFGKPLTSTSANLSGQPACTTRQEVV-AQLGNQIETVLEGETSGRCGPSEIRDA---R 177

Query: 188 KVRILRPG 195
            +++LR G
Sbjct: 178 SLQVLRQG 185


>gi|262402041|ref|ZP_06078605.1| YrdC family protein [Vibrio sp. RC586]
 gi|262351687|gb|EEZ00819.1| YrdC family protein [Vibrio sp. RC586]
          Length = 185

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L +G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   ++   ++
Sbjct: 4   LQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63

Query: 72  KHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   D L+   L ++   WP PLT V+   ++ D          T   RV      ++L
Sbjct: 64  PYIDEDQLTEQQLLQVLASWPAPLTWVMP--ASVDTPSWVRGQFDTVAVRVSNHPLVQQL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN SGQ + T  + ++ + +  +I  +++G  S     S I +    +
Sbjct: 122 CLAFGKPLTSTSANLSGQPACTTRQEVV-AQLGNQIETVLEGETSGRCGPSEIRDA---R 177

Query: 188 KVRILRPG 195
            +++LR G
Sbjct: 178 SLQVLRQG 185


>gi|325836782|ref|ZP_08166249.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sp. HGF1]
 gi|325491160|gb|EGC93449.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sp. HGF1]
          Length = 197

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 12/184 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+TVYG+  +  +P A+ +++E+K RP    LI   +++  ++    V PL   + 
Sbjct: 21  IVFPTDTVYGIGANIHSPIALNKIFEVKNRPTDKSLIILCANV--MQMEEIVGPLDQQVK 78

Query: 85  KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L   F PG LTL+L+  +  ++    T    T   R+P      +L+E  G PLA  SA
Sbjct: 79  VLVDNFLPGGLTLILN--TKLELADEITRGKSTIGLRIPNHPVALELLEKIG-PLATTSA 135

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG+ S T ++   S+ +   +  +ID G +   + STI++   + ++ ILR G +  E
Sbjct: 136 NISGEPSPTMIET--SNPVISRVKFVIDDGETMEKVPSTILDC-TQSEIVILRQGAISEE 192

Query: 201 TLKR 204
            +K+
Sbjct: 193 EIKK 196


>gi|225681026|gb|EEH19310.1| Sua5/YciO/YrdC/YwlC family protein [Paracoccidioides brasiliensis
           Pb03]
          Length = 412

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 59/238 (24%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ AL ++ E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RPA NPLI HVS 
Sbjct: 57  EAKALLESAEALRMSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPADNPLIVHVSS 116

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
              +++                      +L   S++  H  S +       R        
Sbjct: 117 REQLQR----------------------ILRSHSSSPDHGSSDSRKTGNQEREETNLIPP 154

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           + E    PL        G+I I     IL    C             +G+EST+V+    
Sbjct: 155 IYE----PL--------GRIDI-----ILDGGPC------------GVGVESTVVDGLLH 185

Query: 187 KKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
               ILRPGG+ IE ++     E       +  +     P++PGM   HY+P+++V L
Sbjct: 186 PPA-ILRPGGIGIEEIRACPGWEDVRVGYKDGALQGKEAPRAPGMKYKHYSPKAKVVL 242


>gi|293375560|ref|ZP_06621834.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sanguinis PC909]
 gi|292645777|gb|EFF63813.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sanguinis PC909]
          Length = 223

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 97/186 (52%), Gaps = 12/186 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+TVYG+  +  +P A+ +++E+K RP    LI   +++  ++    V PL   + 
Sbjct: 21  IVFPTDTVYGIGANIHSPIALNKIFEVKNRPTDKSLIILCANV--MQMEEIVGPLDQQVK 78

Query: 85  KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L   F PG LTL+L+  +  ++    T    T   R+P      +L+E  G PLA  SA
Sbjct: 79  VLVDNFLPGGLTLILN--TKLELADEITRGKSTIGLRIPNHPVALELLEKVG-PLATTSA 135

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG+ S T ++   S+ +   +  +ID G +   + STI++   + ++ ILR G +  E
Sbjct: 136 NISGEPSPTMIET--SNPVISRVKFVIDDGETMEKVPSTILDC-TQSEIVILRQGAISEE 192

Query: 201 TLKRAI 206
            +K+ +
Sbjct: 193 EIKKVL 198


>gi|255746765|ref|ZP_05420711.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262166889|ref|ZP_06034610.1| YrdC family protein [Vibrio cholerae RC27]
 gi|255735522|gb|EET90921.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262024660|gb|EEY43340.1| YrdC family protein [Vibrio cholerae RC27]
          Length = 185

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 4   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 63

Query: 72  KHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +  VD   L   +L      WP PLT V+   ++ D          T   RV      +
Sbjct: 64  PY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 120 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 176

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 177 -RSLQVLRQG 185


>gi|54023023|ref|YP_117265.1| hypothetical protein nfa10560 [Nocardia farcinica IFM 10152]
 gi|54014531|dbj|BAD55901.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 234

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 9/194 (4%)

Query: 8   DSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           DS A  L  A   L +G  + +PT+T+YGLA D+ + TA+  L   K+R    P+   V 
Sbjct: 24  DSRAAGLTAATSALKSGRLVVMPTDTLYGLAADAFDSTAVAELLAAKRRGRDMPVPVLVG 83

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             + +     SV P +  L + FWPG L+LV+    +       T    T   R+P    
Sbjct: 84  SWNTIDGLVFSVRPQARDLIRAFWPGGLSLVVQQAPSLAWDLGDTRG--TVMLRMPLHPV 141

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L+   G PLA+ SAN SGQ   T         +   + + +DGG +   + STIV++
Sbjct: 142 ALDLLRDVG-PLAVSSANVSGQPPATTAAEA-REQLGSLVSVYLDGGPAAHAVASTIVDL 199

Query: 184 QCEKKVRILRPGGL 197
             ++  RILR G +
Sbjct: 200 TADRP-RILREGAV 212


>gi|229524955|ref|ZP_04414360.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229338536|gb|EEO03553.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 188

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +      + D L+  LA   WP PLT V+   ++ D          T   RV      +
Sbjct: 67  PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|153217569|ref|ZP_01951250.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 1587]
 gi|229515908|ref|ZP_04405365.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
 gi|124113481|gb|EAY32301.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 1587]
 gi|229347008|gb|EEO11970.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
          Length = 188

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 21/192 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           NALRK C        IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 12  NALRKGCV-------IAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           ++ +  VD   L   +L      WP PLT V+   ++ D          T   RV     
Sbjct: 65  LRPY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPV 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + 
Sbjct: 121 VQKLCLAFGKPLTSTSANLSGQPACVTRQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA 179

Query: 184 QCEKKVRILRPG 195
              + +++LR G
Sbjct: 180 ---RSLQVLRQG 188


>gi|15835032|ref|NP_296791.1| hypothetical protein TC0414 [Chlamydia muridarum Nigg]
 gi|270285197|ref|ZP_06194591.1| hypothetical protein CmurN_02078 [Chlamydia muridarum Nigg]
 gi|270289216|ref|ZP_06195518.1| hypothetical protein CmurW_02138 [Chlamydia muridarum Weiss]
 gi|301336593|ref|ZP_07224795.1| hypothetical protein CmurM_02130 [Chlamydia muridarum MopnTet14]
 gi|7190456|gb|AAF39270.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 280

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 19/200 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  E + +G   A PT+TVYGL V    P A ++L+ +K+R     L  +VS +  ++
Sbjct: 2   LSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELE 61

Query: 72  KHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
             A   +   S+ +A+ F PGPLTL+         H     + KT  FR V     K++I
Sbjct: 62  YVAQRRLGEASIKIAQKFLPGPLTLITK-------HNNPRFSQKTLGFRIVEHPIVKQII 114

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G PL   SAN SG  S  +   +      K+I L+I G  S IGLEST+V+   E++
Sbjct: 115 QEVG-PLLATSANVSGFPSAVSSDEVKQDFPEKDI-LVISGTCS-IGLESTVVD--AEER 169

Query: 189 VRILRPG---GLEIETLKRA 205
           + I R G     EIE + +A
Sbjct: 170 I-IYREGVVSAAEIEDVLQA 188


>gi|15640086|ref|NP_229713.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587255|ref|ZP_01677028.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 2740-80]
 gi|121727865|ref|ZP_01680924.1| Sua5/YciO/YrdC family protein [Vibrio cholerae V52]
 gi|147673407|ref|YP_001218359.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395]
 gi|153817585|ref|ZP_01970252.1| Sua5/YciO/YrdC family protein [Vibrio cholerae NCTC 8457]
 gi|153821951|ref|ZP_01974618.1| Sua5/YciO/YrdC family protein [Vibrio cholerae B33]
 gi|229508338|ref|ZP_04397842.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
 gi|229508823|ref|ZP_04398314.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
 gi|229517094|ref|ZP_04406540.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
 gi|229520239|ref|ZP_04409666.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
 gi|229530161|ref|ZP_04419550.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 12129(1)]
 gi|229606613|ref|YP_002877261.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
 gi|254851618|ref|ZP_05240968.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MO10]
 gi|262155846|ref|ZP_06028968.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
 gi|81545625|sp|Q9KVT5|RIMN_VIBCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288233|sp|A5F4C5|RIMN_VIBC3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|9654448|gb|AAF93232.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|18254364|gb|AAL66733.1| Sua5/YciO/YrdC family protein [Vibrio cholerae]
 gi|121548501|gb|EAX58557.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 2740-80]
 gi|121629809|gb|EAX62224.1| Sua5/YciO/YrdC family protein [Vibrio cholerae V52]
 gi|126511853|gb|EAZ74447.1| Sua5/YciO/YrdC family protein [Vibrio cholerae NCTC 8457]
 gi|126520571|gb|EAZ77794.1| Sua5/YciO/YrdC family protein [Vibrio cholerae B33]
 gi|146315290|gb|ABQ19829.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395]
 gi|227011943|gb|ACP08153.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395]
 gi|229332294|gb|EEN97781.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 12129(1)]
 gi|229342833|gb|EEO07824.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
 gi|229346157|gb|EEO11129.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
 gi|229354098|gb|EEO19030.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
 gi|229354611|gb|EEO19533.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
 gi|229369268|gb|ACQ59691.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
 gi|254847323|gb|EET25737.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MO10]
 gi|262030298|gb|EEY48940.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
          Length = 188

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +  VD   L   +L      WP PLT V+   ++ D          T   RV      +
Sbjct: 67  PY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|296268875|ref|YP_003651507.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM
           43833]
 gi|296091662|gb|ADG87614.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM
           43833]
          Length = 215

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 19/205 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   +  G  + IPT+TVYG+  D+ N  A+  L E K R    P    V  +S  
Sbjct: 16  GLTDAASAVRRGELVVIPTDTVYGIGCDAFNTRAVAALLEAKGRGRDMPAPVLVGTVSAA 75

Query: 71  KKHASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-G 122
              A V  L  H   L   FWPGPLTL+         +P    +L     T   R+P   
Sbjct: 76  T--ALVQSLGTHGQDLIDAFWPGPLTLIF------RANPSLAWDLGDTKGTVAVRMPMHQ 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               L+   G P+A+ SANRSGQ   T V+      +   + + +DGG     + STIV+
Sbjct: 128 VALDLLRETG-PMAVSSANRSGQPPATTVEEA-QEQLGDAVSVYLDGGPCTDNVPSTIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS 207
           +      R+LR G + ++ ++  + 
Sbjct: 186 LTTAVP-RLLRKGAIPVDKIRGVVG 209


>gi|84488926|ref|YP_447158.1| hypothetical protein Msp_0096 [Methanosphaera stadtmanae DSM 3091]
 gi|84372245|gb|ABC56515.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091]
          Length = 208

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 10/197 (5%)

Query: 1   MQIMSITDS---NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           M+++ I D+   N L K    L  G  +  PT+T+YG+ VD  N  A++++Y  KKR   
Sbjct: 1   MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYD 60

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            P+   + DI+ VK+ A V     H+     PGP TL+  L   ++I  + TAN      
Sbjct: 61  KPISICLHDITQVKEVAIVTDEIEHIINELLPGPYTLL--LRKKSNIPDILTANTNIIGI 118

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P    T  L + +  P+   SAN S   +  N+  I    +   I + ID G      
Sbjct: 119 RIPDNKITHSLTKDF--PITSTSANLSNIQTPDNITDI-KKQLGDNIDIYIDCGKKIKNQ 175

Query: 177 ESTIVNVQCEKKVRILR 193
            STI+++  ++  +I+R
Sbjct: 176 PSTIIDL-TQQNPKIIR 191


>gi|94266543|ref|ZP_01290229.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
 gi|93452818|gb|EAT03344.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
          Length = 204

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 4/192 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L  G  I  PT+TVYG+  D  N  A++R+Y++K RP   P     +D+  + 
Sbjct: 13  IKRVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKCRPLGQPFSFICADLKEIS 72

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V      + +   PGP T VL   +T  +  +  +  KT   RVP      +L+  
Sbjct: 73  NYAHVSNTGYRVMRKSLPGPYTFVLP--ATKLVPKIMMSKQKTVGIRVPDNRICLELVAG 130

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G+P+   SA      S   +   +       +   ID G   +   ST+V++  + ++ 
Sbjct: 131 LGNPILTTSAAPDDPDSRQLLAFEVDERYGHLVDYTIDSGPLTVAQPSTVVSM-VDDELT 189

Query: 191 ILRPGGLEIETL 202
           +LRPG   +E L
Sbjct: 190 VLRPGKGRLEDL 201


>gi|302344113|ref|YP_003808642.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
 gi|301640726|gb|ADK86048.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
          Length = 203

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 6/186 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A PT+T YGL  D  +  A+RRL++IK +P   P      D+  +  +A+V  
Sbjct: 22  LREGGVVAYPTDTSYGLGCDIFSQKALRRLHQIKAQPESKPFSFICPDLKDLSTYANVTN 81

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +    +   PGP T VL+   +     +     KT   RVP       +++  GHP+A 
Sbjct: 82  YAYKTLRRLLPGPYTFVLE--GSRHAPKMVLTKRKTVGIRVPDHPVCLAIVQELGHPIAS 139

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            +A   GQ    N    + S +   + L++DGG +  GL S+++ +  ++  +I+R G  
Sbjct: 140 TTA-MDGQGRALNTPWEIESELGHALDLVVDGGPAP-GLLSSVIGLIGDEP-QIIREGAG 196

Query: 198 EIETLK 203
           ++E  +
Sbjct: 197 DVEEFR 202


>gi|227487984|ref|ZP_03918300.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092075|gb|EEI27387.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 212

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 15/198 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A + ++AG  + IPT+TVYG+  ++ NP A+ +L + K R    P+   V     V
Sbjct: 16  GLNSAADAVEAGRLVVIPTDTVYGIGCNAFNPEAVNKLLQAKHRGPDMPVPVLVGSWDTV 75

Query: 71  KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-FT 124
           +  +      ++ L + FWPG L++V+         P  T NL     +   R+P     
Sbjct: 76  RGLSRDYTRQMNVLIEAFWPGGLSIVVPQ------APSLTWNLGDTNGSVMLRMPLQKLA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +L++  G P+A+ SAN SGQ    N +      +   + + ++GG ++IG  STI+++ 
Sbjct: 130 IELLQKTG-PMAVSSANISGQPPALNAREA-EEQLGNSVSVYLEGGQAEIGTPSTIIDL- 186

Query: 185 CEKKVRILRPGGLEIETL 202
            +    ILR G +  E +
Sbjct: 187 TQATPTILREGAIPSEKI 204


>gi|94266276|ref|ZP_01289981.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
 gi|93453127|gb|EAT03598.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
          Length = 206

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 4/192 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L  G  I  PT+TVYG+  D  N  A++R+Y++K RP   P     +D+  + 
Sbjct: 15  IKRVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKCRPLGQPFSFICADLKEIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V      + +   PGP T VL   +T  +  +  +  KT   RVP      +L+  
Sbjct: 75  NYAHVSNTGYRVMRKSLPGPYTFVLP--ATKLVPKIMMSKQKTVGIRVPDNRICLELVAG 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G+P+   SA      S   +   +       +   ID G   +   ST+V++  + ++ 
Sbjct: 133 LGNPILTTSAAPDDPDSRQLLAFEVDERYGHLVDYTIDSGPLTVAQPSTVVSM-VDDELT 191

Query: 191 ILRPGGLEIETL 202
           +LRPG   +E L
Sbjct: 192 VLRPGKGRLEDL 203


>gi|254291086|ref|ZP_04961883.1| Sua5/YciO/YrdC family protein [Vibrio cholerae AM-19226]
 gi|150422931|gb|EDN14881.1| Sua5/YciO/YrdC family protein [Vibrio cholerae AM-19226]
          Length = 188

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAMDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +  VD   L   +L      WP PLT V+   ++ D          T   RV      +
Sbjct: 67  PY--VDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|297581913|ref|ZP_06943833.1| Sua5/YciO/YrdC family protein [Vibrio cholerae RC385]
 gi|297533780|gb|EFH72621.1| Sua5/YciO/YrdC family protein [Vibrio cholerae RC385]
          Length = 188

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + ++
Sbjct: 7   LQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLR 66

Query: 72  KHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +      + D L+  LA   WP PLT V+   ++ D          T   RV      +
Sbjct: 67  PYVDETQLTADQLTQVLAS--WPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I +   
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVM-VQLGNQIAVVVEGKTSGRHGPSEIRDA-- 179

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 180 -RSLQVLRQG 188


>gi|256072137|ref|XP_002572393.1| hypothetical protein [Schistosoma mansoni]
 gi|238657551|emb|CAZ28624.1| expressed protein [Schistosoma mansoni]
          Length = 287

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 93/220 (42%), Gaps = 53/220 (24%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PT+T+YGLA    N  AI R+  IK R    P+   +  +S +        +   L 
Sbjct: 45  VALPTDTIYGLACSVFNTEAIERIRRIKGRSETKPMAICLDQVSHISHWCDTKNIPTGLL 104

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVP-CGFTKKLIE---------- 129
               PGP+T++L   S     PLST  L    K    R+P  GF +KLI           
Sbjct: 105 SDLLPGPVTVLLPRFSDRLQDPLSTRLLNLGDKRVGIRIPDSGFIRKLISALNEQTRSSS 164

Query: 130 --------------------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
                               + GHPL + SAN SGQ S   ++    S I   I LII+G
Sbjct: 165 IIGNNVEHSSGCDERDSISISGGHPLVLTSANLSGQPSAIQIEEF--SEIWSSIDLIING 222

Query: 170 G------------ISKIGLESTIVNV-QCEKKV-RILRPG 195
           G             S+ G  STI+++  C+K V  ++R G
Sbjct: 223 GPIQSDIFSGNSDCSRAG--STIIDLCNCDKSVYSVVRNG 260


>gi|324523357|gb|ADY48235.1| YrdC domain-containing protein [Ascaris suum]
          Length = 226

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 30/235 (12%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +TDS    AL +A   L++G  IA+PT+T+YGL+    N     +L+++K R  M 
Sbjct: 3   KIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNAD---KLFKLKFRSRMK 59

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P    +SD++ + K A +  + +H  +   PGP+TLV +   ++ +        +T   R
Sbjct: 60  PFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFN--RSSRLPAEFNEGHRTIGIR 116

Query: 119 VPC-GFTKKLIETYGH-PLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGG-- 170
           +P   F   L +  G  PLA  SAN SG     +S+ + + +        + LIIDG   
Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVEDFEDLWPG-----VDLIIDGDVL 171

Query: 171 ------ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219
                 +S+ G  ST+VN+       I+R G     T +R     L    D  S+
Sbjct: 172 KDPTGKVSRRG--STVVNLCIPGTYSIIRDGCARSSTEERLRDCGLTAITDGESS 224


>gi|305681802|ref|ZP_07404606.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658275|gb|EFM47778.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium matruchotii
           ATCC 14266]
          Length = 227

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 22/233 (9%)

Query: 2   QIMSITDSNALRK-----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-P 55
           +I S TD+  +R      A   + +G  + +PT+T+YGL  D+ +  A+ RL   K R P
Sbjct: 3   RIYSCTDTGEIRSLGIKAAVGAVKSGRLVVLPTDTLYGLGCDAFDNDAVARLLAAKDRGP 62

Query: 56  AMN-PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-- 112
            M  P++    D +    H+  D L   L + FWPG L++V+         P    NL  
Sbjct: 63  DMPVPVLVGSWDTARGLVHSYNDQLR-TLIEAFWPGGLSIVVPQ------APSLMWNLGD 115

Query: 113 --KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
              T   R+P      +L+   G P+A+ SAN SGQ   T    +    +  ++ + +DG
Sbjct: 116 TRGTVMLRMPLHPVAIELLRETG-PMAVSSANISGQPPATTAA-MAEEQLGDKVNVYLDG 173

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
           G + +G+ S+I++V  ++  R+LR G +    +   + V  E       TP++
Sbjct: 174 GETSVGVASSIIDVSGDQP-RLLREGAIPATRIADVLGVAPETLTPAARTPEN 225


>gi|325294265|ref|YP_004280779.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064713|gb|ADY72720.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 203

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 22/214 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ++S  D   + K  + L AG  I  PT+T++G+  ++ +   +++LY +KKR    PL
Sbjct: 1   MQVLSKED---IEKISQILRAGELICSPTDTLFGILGNALDKEVVKKLYSVKKRDVNKPL 57

Query: 61  ICHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   S I  +     + PL  L+  K  +P P+T++L L   +    +   +      R+
Sbjct: 58  IVLFSSIEQLVNFGVLVPLKYLNGLKKLYPAPVTVILPLSKESPFRKVFQRD--NLAVRI 115

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-----IPLIIDGGISK 173
           P   F +KLI+    PL  PSAN  G++   N K       CK      I   I+G +S+
Sbjct: 116 PKDDFLQKLIKK-TFPLFAPSANPQGELPAKNCKE------CKNYFDGVINFCIEGKVSE 168

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
               STIV++  E  V ++R G ++ E +   +S
Sbjct: 169 A--PSTIVDLTGETPV-LIRKGIVKFEKVLEVLS 199


>gi|282163670|ref|YP_003356055.1| hypothetical protein MCP_1000 [Methanocella paludicola SANAE]
 gi|282155984|dbj|BAI61072.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 197

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 17/198 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N + +A   +  G  IA PTETVYG+   + +  A++R+Y+IK RP   PL   VS + 
Sbjct: 4   GNDIARAAGIVKTGGVIAYPTETVYGIGALATDVGALQRVYQIKNRPLNQPLSIAVSSME 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKK 126
           M+K  A V+     L   F PGP+T++   L    I P + TA  K    R P       
Sbjct: 64  MLKSVAKVECEDFILK--FLPGPVTVI---LKKNKILPDILTARSKYIGIRWPDNKMALD 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+   SAN  G+      + +  +     +  ++DGG  + G  STIV++   
Sbjct: 119 LINQTG-PIVSTSANLHGEKDPVRAEEVKIA-----VDYVLDGGPCRYGAPSTIVDLHEY 172

Query: 187 KKVRILRPGGLEIETLKR 204
             VR     G+  E ++R
Sbjct: 173 TVVR----KGIMYEEVRR 186


>gi|254491166|ref|ZP_05104347.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxidans
           DMS010]
 gi|224463679|gb|EEF79947.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxydans
           DMS010]
          Length = 188

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+A + L+ G  IA PTE VYG+  D  +  A+  L EIK+RP    LI   +D + ++
Sbjct: 12  LRQAVKTLNLGGTIAYPTEAVYGVGCDPWDEEAVLTLLEIKQRPWTKGLILIAADFNQLQ 71

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               ++P+S   L   +  WPGP+T +L   + +D+    T    T   RV     T++L
Sbjct: 72  DF--IEPVSAAMLEQLQQTWPGPVTWLLP--ARSDVPGYLTGMHDTIAVRVTAHPLTRQL 127

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154
            E +G  +   SAN +G     NV  +
Sbjct: 128 CEAFGGAIVSTSANITGLKPAMNVHQV 154


>gi|197122573|ref|YP_002134524.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K]
 gi|220917357|ref|YP_002492661.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172422|gb|ACG73395.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K]
 gi|219955211|gb|ACL65595.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 207

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 96/193 (49%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L +G  IA PT+T YG+  D  +  AI R+Y++K+ P  + L     D++ + 
Sbjct: 19  VERAVSALSSGGVIAYPTDTFYGIGCDLFDKRAIERIYQLKQLPRTHELAFICQDLAEIS 78

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           ++A VD  +  + +   PGP T +L   +T  +  L     KT   R+P      +L+  
Sbjct: 79  RYAIVDNAAYRVLRRKVPGPFTFILP--ATRLVPELVLRRQKTVGIRIPDSPIALELVRR 136

Query: 131 YGHPLAIPSANR-SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            GHPL   SA +  G+I I    H +   +   + LI+DGG  +    S+++++   + V
Sbjct: 137 LGHPLISTSAAKPEGEILID--AHDIKDELGHGLDLILDGGF-RPAEPSSVIDLSGPEPV 193

Query: 190 RILRPGGLEIETL 202
            ++R G  ++  L
Sbjct: 194 -VVRAGKGDVSDL 205


>gi|225010663|ref|ZP_03701133.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005216|gb|EEG43168.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-3C]
          Length = 188

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 23/195 (11%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL+K+ E L  G  I  PT+TV+G+  D++N  A+ +++ +KKR     ++C V++++M+
Sbjct: 6   ALKKSAEILKQGGVILYPTDTVWGIGCDAKNEAAVEKVFALKKRADTKSMLCLVANVAML 65

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           ++H +  P + +        P T++ D    ++   I P ++  ++ A  +    F   L
Sbjct: 66  ERHIAQVPEAAYDIIDLSEKPTTIIFDQPIGVAKNLIGPDNSLGIRVAKDK----FCSYL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--------ST 179
            +    PL   SAN +GQ +  N + I S  I K +  I+        LE        ST
Sbjct: 122 SQNIKGPLVSTSANLAGQPTPKNFQEI-SQEILKGVDYIVP-------LEPEIHNNTPST 173

Query: 180 IVNVQCEKKVRILRP 194
           I+ +     V+++RP
Sbjct: 174 IIKLSNSGLVKVIRP 188


>gi|225022788|ref|ZP_03711980.1| hypothetical protein CORMATOL_02833 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944395|gb|EEG25604.1| hypothetical protein CORMATOL_02833 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 227

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 22/233 (9%)

Query: 2   QIMSITDSNALRK-----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-P 55
           +I S TD+  +R      A   + +G  + +PT+T+YGL  D+ +  A+ RL   K R P
Sbjct: 3   RIYSCTDTGEVRSLGIKAAVGAVKSGRLVVLPTDTLYGLGCDAFDNDAVARLLAAKDRGP 62

Query: 56  AMN-PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-- 112
            M  P++    D +    H+  D L   L + FWPG L++V+         P    NL  
Sbjct: 63  DMPVPVLVGSWDTARGLVHSYNDQLR-TLIEAFWPGGLSIVVPQ------APSLMWNLGD 115

Query: 113 --KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
              T   R+P      +L+   G P+A+ SAN SGQ   T    +    +  ++ + +DG
Sbjct: 116 TRGTVMLRMPLHPVAIELLRETG-PMAVSSANISGQPPATTAA-MAEEQLGDKVNVYLDG 173

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
           G + +G+ S+I++V  ++  R+LR G +    +   + V  E       TP++
Sbjct: 174 GETSVGVASSIIDVSGDQP-RLLREGAIPATRIADVLGVAPETLTPAARTPEN 225


>gi|85859579|ref|YP_461781.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB]
 gi|85722670|gb|ABC77613.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB]
          Length = 202

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 8/186 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++K  E L  G  +  PT+TVYGL  +  N   I ++YEIKKR    PL    +D+  + 
Sbjct: 15  IKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKKQPLSFICADLKDIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           K+A V      + K   PGP T +L   ++  +  +     +T   RVP       L+  
Sbjct: 75  KYAQVTDFGYRIMKRHLPGPYTFILQ--ASRLVPKIILPKRQTTGIRVPDNRICMALVAE 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKV 189
            G P+ I ++ ++      N    + S     + +II+GGI  I  E STIV++  +  V
Sbjct: 133 LGQPI-ISTSVKAADDRYLNDPEEIESIFKHHVDVIINGGI--IAAEPSTIVSL-IDDTV 188

Query: 190 RILRPG 195
            +LR G
Sbjct: 189 EVLRIG 194


>gi|172040387|ref|YP_001800101.1| hypothetical protein cur_0707 [Corynebacterium urealyticum DSM
           7109]
 gi|171851691|emb|CAQ04667.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 219

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 13/204 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A   +  G  I +PT+T+YG+  D+ +  A+  L + K R    P+   +     
Sbjct: 15  GAIVTAENAVKGGRLIVMPTDTLYGIGCDAFDNAAVEALLQAKHRGPDMPVPVLIGSWET 74

Query: 70  VKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FT 124
           V+    V   S HL +L   FWPG L+LV+    +    P +  + + T   R+P     
Sbjct: 75  VE--GLVAEFSAHLRRLVEAFWPGGLSLVVPQAPSL---PWNLGDTRGTVMLRMPNHPIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L++  G P+A+ SAN SGQ   T V  +    +   + + +DGG + IG  STIV++ 
Sbjct: 130 IDLLQRTG-PMAVSSANVSGQPPATTVA-MAEDQLGDSVAVYLDGGEATIGEPSTIVDLA 187

Query: 185 CEKKVRILRPGGLEIETLKRAISV 208
             +  RILR G +  E +   + +
Sbjct: 188 GHRP-RILREGAISAEQIGEVLQM 210


>gi|242237896|ref|YP_002986077.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech703]
 gi|242129953|gb|ACS84255.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech703]
          Length = 189

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+ RL ++K+RP    LI   +D + V+ +  V  LS +  
Sbjct: 22  IAYPTEAVFGLGCDPDSEVAVNRLLQLKQRPWEKGLILIAADFAQVEPYIDVSALSYIQQ 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            ++F  WPGP+T V+   + T      T    +   RV      K+L   +G PL   SA
Sbjct: 82  QRMFSTWPGPVTWVIPAKAQTP--KWLTGQFSSLAVRVSDHPLVKQLCLAFGKPLVSTSA 139

Query: 141 NRSGQISITNVKHILSSSICKEIPLI 166
           N SG+      + +L S   K  P++
Sbjct: 140 NLSGEAPCRTAEDVL-SQFGKNFPVL 164


>gi|284036531|ref|YP_003386461.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
 gi|283815824|gb|ADB37662.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
          Length = 206

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 11/182 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNP--LICHVSDISMVKKHAS 75
           L  G  I  PT+T+YG+  D  N  A+ R+  IK  +PA N    IC+  D+S +  +A 
Sbjct: 25  LRDGAVIIYPTDTIYGMGCDIHNTRAVERVARIKGIKPAKNDFSFICY--DLSHIADYAR 82

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           V   +  L K   PGP T +L+  +T  +  +  +N KT   RVP     ++++   G+P
Sbjct: 83  VGNQAFKLMKKVLPGPFTFILE--ATGSVPKILNSNKKTVGIRVPDNDIPRQIVHELGNP 140

Query: 135 LAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           +   S     + I  +    ++      ++ ++IDGG     + STIV+   +    I+R
Sbjct: 141 IITTSIRDEDEIIEYSTDPELIFEKFQNQVDMVIDGGYGG-NVASTIVDA-TDDNFSIIR 198

Query: 194 PG 195
            G
Sbjct: 199 QG 200


>gi|319948466|ref|ZP_08022602.1| hypothetical protein ES5_03818 [Dietzia cinnamea P4]
 gi|319437886|gb|EFV92870.1| hypothetical protein ES5_03818 [Dietzia cinnamea P4]
          Length = 217

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 19/207 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   L AG  +  PT+T+YG+A D+ +P A+  L   K R    P+   V     +
Sbjct: 16  GLSSAAGALRAGRLVVTPTDTLYGIAADAFDPDAVNLLLSAKHRGPDMPVPVLVGSWETI 75

Query: 71  KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK------TACFRVPCG- 122
                  P  +  L + FWPG L+L+        +H   + N        T   R+P   
Sbjct: 76  DGLVVSTPAPARDLIRAFWPGGLSLI--------VHQAPSLNWNLGHTRGTVMLRMPLHP 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              +L+   G PLA+ SAN SGQ   T V       +   + + +DGG   IG  STIV+
Sbjct: 128 VAIELLREVG-PLAVSSANVSGQPPATTVAQA-REQLGDSVAVYLDGGPCAIGAPSTIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE 209
           +      RI+R G +  E +   + ++
Sbjct: 186 ITGAAP-RIVREGAVTAERVGEVLGID 211


>gi|301614722|ref|XP_002936826.1| PREDICTED: hypothetical protein LOC100498107 [Xenopus (Silurana)
           tropicalis]
          Length = 866

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 11/196 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++LR     LD G    IPT+TVY LA   ++P AI R+Y IK+RP+  P+   +S++ 
Sbjct: 652 TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 711

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLS--TANLKTACFRVP-C 121
            ++  +    PL      L +PG ++ ++   + L    + P         +   RVP  
Sbjct: 712 QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 771

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  L +  G PLAI SAN SG+   T+   ++ + +  ++  ++  G S   + ST+V
Sbjct: 772 SVTAHLTDMTG-PLAITSANPSGESDSTHHDMVI-TRLSDKLDAVLCDGFSNELVGSTVV 829

Query: 182 NVQ--CEKKVRILRPG 195
           N     E  ++ILR G
Sbjct: 830 NCTKIDEGTIKILREG 845


>gi|258626121|ref|ZP_05720972.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM603]
 gi|262172819|ref|ZP_06040497.1| YrdC family protein [Vibrio mimicus MB-451]
 gi|258581647|gb|EEW06545.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM603]
 gi|261893895|gb|EEY39881.1| YrdC family protein [Vibrio mimicus MB-451]
          Length = 185

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L +G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   ++   ++
Sbjct: 4   LQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63

Query: 72  KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLST--ANLKTACFRVPCG-FTK 125
            +   + L+   LA++   WP PLT V+       IH  S       T   RV      +
Sbjct: 64  PYIDENQLTADQLAQVLASWPAPLTWVM----PASIHTPSWVRGQFDTVAVRVSNHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G PL   SAN SGQ + T  + ++ + +  +I  +++G  S     S I +   
Sbjct: 120 QLCLAFGKPLTSTSANLSGQSACTTQQEVV-AQLGSQIEAVLEGKTSGRCGPSEIRDA-- 176

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 177 -RSLQVLRQG 185


>gi|237712469|ref|ZP_04542950.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726660|ref|ZP_04557141.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752175|ref|ZP_06087968.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA]
 gi|229435186|gb|EEO45263.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453790|gb|EEO59511.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263236967|gb|EEZ22437.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA]
          Length = 191

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 6/185 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+KACE +  G  I  PT+T++G+  D+ NP A++R+Y+IKKR     ++  V     V 
Sbjct: 9   LKKACEVMQKGGVILYPTDTIWGIGCDATNPKAVKRVYDIKKRADSKAMLVLVDSTVKVN 68

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
            + S  P        F   PLT++ D     ++     A   +   RV    F+K+L   
Sbjct: 69  FYVSDVPAVAWDLIEFATKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQLCFR 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKK 188
           +   +   SAN SGQ S  N   I S  + + +  I++    ++G    S+I+ +    +
Sbjct: 127 FRKAIVSTSANISGQPSPANFSEI-SEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGKGGE 185

Query: 189 VRILR 193
           V+I+R
Sbjct: 186 VKIIR 190


>gi|320449794|ref|YP_004201890.1| Sua5/YciO/YrdC/YwlC family protein [Thermus scotoductus SA-01]
 gi|320149964|gb|ADW21342.1| Sua5/YciO/YrdC/YwlC family protein [Thermus scotoductus SA-01]
          Length = 197

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 17/203 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+      L++A E L  G  +A PT+TV+G+     +  A RR+Y +K R    PL   
Sbjct: 1   MAEVYQKELQEAAETLRRGGLVAFPTDTVWGILARLEDEAACRRIYALKGRGEEKPLQVL 60

Query: 64  VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           V+D+    K   +  L    L LA+ FWPG LT+V   +   +I P  + +  +   R+P
Sbjct: 61  VTDLESALKLVDLGKLRDKFLRLAEAFWPGGLTVV---VPGQNIPPWISRD-GSVGLRMP 116

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++L+   G   A  S NRSG+  +   K      +    P         +GL S+
Sbjct: 117 DHALLRELLRRVGGYAAATSLNRSGEPPVRTEKEAREFGVDYVFP------GEALGLASS 170

Query: 180 IVNVQCEKKVRILRPGGLEIETL 202
           +V+++  +   +LR G +  E L
Sbjct: 171 VVDLRTGE---VLREGAIPKEAL 190


>gi|212691027|ref|ZP_03299155.1| hypothetical protein BACDOR_00517 [Bacteroides dorei DSM 17855]
 gi|212666259|gb|EEB26831.1| hypothetical protein BACDOR_00517 [Bacteroides dorei DSM 17855]
          Length = 191

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 6/185 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+KACE +  G  I  PT+T++G+  D+ NP A++R+Y+IKKR     ++  V     V 
Sbjct: 9   LKKACEVMQKGGVILYPTDTIWGIGCDATNPKAVKRVYDIKKRADSKAMLVLVDSTVKVN 68

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
            + S  P        F   PLT++ D     ++     A   +   RV    F+K+L   
Sbjct: 69  FYVSDVPAVAWNLIEFATKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQLCFR 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKK 188
           +   +   SAN SGQ S  N   I S  + + +  I++    ++G    S+I+ +    +
Sbjct: 127 FRKAIVSTSANISGQPSPANFSEI-SEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGKGGE 185

Query: 189 VRILR 193
           V+I+R
Sbjct: 186 VKIIR 190


>gi|324522067|gb|ADY47983.1| YrdC domain-containing protein [Ascaris suum]
          Length = 208

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 30/211 (14%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +TDS    AL +A   L++G  IA+PT+T+YGL+    N     +L+++K R  M 
Sbjct: 3   KIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNAD---KLFKLKFRSRMK 59

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P    +SD++ + K A +  + +H  +   PGP+TLV +   ++ +        +T   R
Sbjct: 60  PFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFN--RSSRLPAEFNEGHRTIGIR 116

Query: 119 VPC-GFTKKLIETYGH-PLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGG-- 170
           +P   F   L +  G  PLA  SAN SG     +S+ + + +        + LIIDG   
Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVEDFEDLWPG-----VDLIIDGDVL 171

Query: 171 ------ISKIGLESTIVNVQCEKKVRILRPG 195
                 +S+ G  ST+VN+       I+R G
Sbjct: 172 KDPTGKVSRRG--STVVNLCIPGTYSIIRDG 200


>gi|255038761|ref|YP_003089382.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
           18053]
 gi|254951517|gb|ACT96217.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
           18053]
          Length = 208

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 11/193 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNP--LICHV 64
           D   +R+  + L  G  +  PT+TVYGL  D  N  A+ ++  IK  +P  N    IC+ 
Sbjct: 14  DERRVRQVVDCLRNGGLVIYPTDTVYGLGCDIYNTRAVEKIARIKGIKPQKNDFSFICY- 72

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+S +   A V   +    K   PGP T +L+  +T+++  L   N KT   RVP    
Sbjct: 73  -DLSHISDFARVGNTAFKTMKRVLPGPYTFILE--ATSNVPKLLNTNKKTVGIRVPDNLI 129

Query: 125 KKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            +LI +  G+P+   S     + I  +    ++      ++ +++DGG     + STIV 
Sbjct: 130 PRLIVKELGNPIVTTSIRDDDEIIEYSTDPELIFEKFQHQVDMVVDGGYGG-NVASTIVK 188

Query: 183 VQCEKKVRILRPG 195
              +    I+R G
Sbjct: 189 ADGD-DFEIIREG 200


>gi|328950484|ref|YP_004367819.1| Sua5/YciO/YrdC/YwlC family protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450808|gb|AEB11709.1| Sua5/YciO/YrdC/YwlC family protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 197

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 20/186 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV---DPLSL 81
           +A PT+TV+GL     +  A RR+Y IK R A  PL   VS +    + A +   +P+ L
Sbjct: 18  VAFPTDTVWGLLARMEDEAACRRIYRIKGRAAEKPLQVLVSSVEAALELAELGPHEPVFL 77

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC--GFTKKLIETYGHPLAIPS 139
            LA+ FWPGPLT+V   +    I P  + +  T   R+P      + L    GH  A  S
Sbjct: 78  ELAREFWPGPLTIV---VPGQAIPPWISPD-GTVGLRMPAHDELLEILAGVGGHAAAT-S 132

Query: 140 ANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            N+SG     + +  L+ +     PL+  +  G +  G+ S++V++    + ++LR GG+
Sbjct: 133 LNQSGAPPARSYEEALTFA-----PLVDRVHPGDTPAGVASSVVDL---VRGQVLREGGV 184

Query: 198 EIETLK 203
               LK
Sbjct: 185 PASALK 190


>gi|300741302|ref|ZP_07071323.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa M567]
 gi|300380487|gb|EFJ77049.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa M567]
          Length = 325

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 14/152 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           I IPT+TVYG+A D+ +   + +L   K R    P    + D++ +   A   P  ++ L
Sbjct: 7   IVIPTDTVYGIACDAFSHQGVSKLLADKGRSRTMPPPVLIFDLAALAGVADEIPNDVYDL 66

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-FTKKLIETYGHPLAIP 138
              FWPG LT++L        +P  T +L     T   RVP   F  KL+  +G PLA+ 
Sbjct: 67  GNKFWPGALTIIL------YSYPSLTWDLGETQGTVAVRVPDDKFALKLLTEHG-PLAVS 119

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           SAN++GQ +  N K  L + + +++ L++D G
Sbjct: 120 SANKTGQPAAANAKEAL-TQLGEDVTLVVDDG 150


>gi|163783730|ref|ZP_02178716.1| hypothetical protein HG1285_01498 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880976|gb|EDP74494.1| hypothetical protein HG1285_01498 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 209

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +D  ++  A   L  G  I  PT+T+YG+  D+ N  ++  L  ++ RP+  P I  + D
Sbjct: 12  SDPESVPLAVRSLGKGEFIVAPTDTIYGILADALNYNSVAGLKRLR-RPSGRPFIVLIPD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +S V K   ++    +L  L  PG +T+V     T   H L   +L     R P  GF  
Sbjct: 71  LSWVAK-LGLEARKENLKLLSLPG-ITVVFRK-KTGLYHWLGVDSL---AVRYPRRGFIY 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L++ YG PL  PSAN  G     +V   +       + L +DGG  + G  STI  ++ 
Sbjct: 125 RLLKRYGKPLVAPSANPEGLPPARDVGEAM-GYFGDAVSLYVDGGRIE-GTPSTI--IKA 180

Query: 186 EKKVRILRPGGLEIETLKRAISVE 209
           E+K+ ++R G L  + L+R + ++
Sbjct: 181 EEKLEVIRRGSLSPDNLRRLLRLQ 204


>gi|313889339|ref|ZP_07822987.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122171|gb|EFR45262.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 197

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 10/192 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           ++ G  + +PTETVYGL   + +  A+ ++Y +K+RP    +  +V+D   +  ++   P
Sbjct: 8   IENGGALILPTETVYGLFAKAMDEQAVNKVYALKQRPREKAMNLNVADYQAILDYSKDQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPL 135
             L  L   F PGPLT++   L   D  P    + K T  FR+P    T +LI   G PL
Sbjct: 68  AYLKELYDAFLPGPLTII---LKANDRVPFWINSGKDTVGFRLPKHPVTAQLIRLAG-PL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SG  S      I+ +   +      D  ++  G +STI+++    K +ILR G
Sbjct: 124 IGPSANLSGSQSGRRYADIIRAFHNQVEGYEDDQFLT--GEDSTIIDLSGS-KAKILRQG 180

Query: 196 GLEIETLKRAIS 207
            +    ++  IS
Sbjct: 181 SISAAHIQAKIS 192


>gi|326673503|ref|XP_693825.3| PREDICTED: hypothetical protein LOC565454 [Danio rerio]
          Length = 880

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSD 66
           +++ L K  + L+      IPT+TVY LA   +NP+AI ++Y IK RPA  P+ IC  S 
Sbjct: 667 ETSGLLKIAKLLENNGVCGIPTDTVYALAASCKNPSAIEKIYTIKDRPAEKPICICISSV 726

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLS--TANLKTACFRVPC 121
             +V       PL     +  +PG ++ ++   D L    + P        ++   RVP 
Sbjct: 727 EQLVAAKPPFSPLLWEFMRNVYPGGISCIVPKGDWLLKLGVGPAYDRVGTRESIMIRVPD 786

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                 +  +  PLAI SAN SG+   T+   +++    K   ++ DG  +++ + ST+V
Sbjct: 787 HTATAHLCEFTGPLAITSANPSGEADSTHHDMVINRLGHKIEGVLCDGESNEV-VASTVV 845

Query: 182 NVQC----EKKVRILRPG 195
           N  C    E  + ILR G
Sbjct: 846 N--CLKIDEGAISILREG 861


>gi|255004138|ref|ZP_05278939.1| hypothetical protein AmarV_01920 [Anaplasma marginale str.
           Virginia]
          Length = 214

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 22/190 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +  PT+T+Y LA  + +  +++RLYEIK+R    P+   ++ ++ ++
Sbjct: 1   MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPC-GFTKKLIE 129
           K AS+      + +   PGP+T V+ L    D   L     + T   R+P     + ++E
Sbjct: 61  KFASLKDEDWGIIERLSPGPVTFVVPL---HDTQSLPGEFFRGTVGVRIPNHAMARTILE 117

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIV 181
            +G P+A  SAN SG         +  +    EIP  I   +S++        G+ ST+ 
Sbjct: 118 EFGGPVAATSANLSG---------MPGARRAMEIPQEIRDCVSELMEDDSAVGGMCSTVF 168

Query: 182 NVQCEKKVRI 191
           +VQ  K +RI
Sbjct: 169 DVQSRKVLRI 178


>gi|262273073|ref|ZP_06050890.1| YrdC family protein [Grimontia hollisae CIP 101886]
 gi|262222829|gb|EEY74137.1| YrdC family protein [Grimontia hollisae CIP 101886]
          Length = 185

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 16/181 (8%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  IA PTE V+G+  D  +P A++ L ++K R     LI   ++ S ++ +   D LS 
Sbjct: 14  GEVIAYPTEGVFGVGCDPDSPQAVQALLDVKARDKAKGLILIAAEFSQLEGYIDFDSLSD 73

Query: 82  HLAK---LFWPGPLTLVLDL-LSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHP 134
            +       WPGP+T V+     TTD     T    T   RV   P    + L  +YG P
Sbjct: 74  EVKADVLATWPGPVTWVMPAGKKTTD---WVTGQFDTVAVRVSDHP--DVRALCLSYGKP 128

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           +   SAN SG+    +V+ ++   + + +P +++G   KIG       ++  +  ++LR 
Sbjct: 129 ITSTSANLSGEAPCRSVEEVV-KQLGERVPNVLEG---KIGGRDKPTEIRDARSGKVLRQ 184

Query: 195 G 195
           G
Sbjct: 185 G 185


>gi|197294283|ref|YP_001798824.1| Translation factor [Candidatus Phytoplasma australiense]
 gi|171853610|emb|CAM11481.1| Translation factor [Candidatus Phytoplasma australiense]
          Length = 188

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 8/181 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+TVYG+ V   +   ++ +Y++KKR     +I   S +   +     + +S  LA
Sbjct: 11  IIFPTDTVYGMGVSLYDEKGLKEIYQLKKRSLQKNIIVLCSSLKEAQTLVKFNEISYQLA 70

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
             F+PGPLTL+L     T    L     KT   R+P       L++ YG PL   S N S
Sbjct: 71  TKFFPGPLTLILK----TQTSYLKKTGQKTLGIRIPNHPLALSLLKKYG-PLKTTSVNES 125

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+  + N  + +      ++  I       + + STIV+    K + +LR G +    +K
Sbjct: 126 GKEPL-NYYNTIYQMYNNKVGFIYPNDYPILKVASTIVDATTNKLI-VLRQGSISEAEIK 183

Query: 204 R 204
           +
Sbjct: 184 K 184


>gi|227329887|ref|ZP_03833911.1| putative DNA topoisomerase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 189

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D S +  +     LS    
Sbjct: 22  IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLASYIDDSALSDEQK 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPGP+T VL    TT      T    +   RV      K+L + YG PL   SA
Sbjct: 82  AVMFSTWPGPVTWVLPAKHTT--PQWLTGQFSSLAVRVSDHPLVKELCQRYGKPLVSTSA 139

Query: 141 NRSGQISITNVKHILSSSICKEIPLII 167
           N SGQ      + + S     + P+++
Sbjct: 140 NLSGQPPCRTAQEV-SQQFGDDFPVLV 165


>gi|117918499|ref|YP_867691.1| translation factor SUA5 [Shewanella sp. ANA-3]
 gi|212288226|sp|A0KR66|RIMN_SHESA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|117610831|gb|ABK46285.1| translation factor SUA5 [Shewanella sp. ANA-3]
          Length = 188

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G+ IA PTE VYGL  D  N TAI++L  +K+RP    LI   S+ S +  +     
Sbjct: 14  LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYVDESQ 72

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           LS   L  A   WPGP T V+ +     +         +   RV      + L +  G P
Sbjct: 73  LSAEQLEFAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHDGVRALCQALGKP 130

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           L   SAN +G+    +   IL++   K I  ++ G + +    STI++ +  K +R
Sbjct: 131 LVSTSANLAGEDPALSGDEILNAFEGK-IDALVLGALGEQRQPSTIIDARSGKILR 185


>gi|157373182|ref|YP_001471782.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3]
 gi|212288227|sp|A8FP81|RIMN_SHESH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|157315556|gb|ABV34654.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3]
          Length = 185

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E ++ G  +A PTE VYGL  D  N  AI RL  +KKRP    LI   SD   +  +   
Sbjct: 11  EIIEQGGVVAYPTEAVYGLGCDPDNDEAITRLLALKKRPWQKGLILVASDYQQLLPYIDE 70

Query: 77  DPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYG 132
             L+   L K+F  WPGP T ++ +     +  L   +  +   RV    T + + +  G
Sbjct: 71  SRLTNEQLNKVFVKWPGPFTFIMPI--KPGLSNLLCGSFNSLAVRVSSHPTIQAICQRLG 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +G+    + + I+ +    EI  +I G +      STIV+    K +R
Sbjct: 129 KPLVSTSANHAGEPPAMSCEEII-AKFDGEIDALISGSLGAERKPSTIVDAISGKVLR 185


>gi|254427759|ref|ZP_05041466.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
 gi|196193928|gb|EDX88887.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
          Length = 182

 Score = 66.6 bits (161), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A + + AG  IA PTE+VYGL  D  N  A+ +L  IK+RP    LI     ++ + 
Sbjct: 5   LLSAAQIIQAGGVIAYPTESVYGLGCDPFNQDAVMQLLAIKQRPVSKGLILIGETLAQLA 64

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +  ++       +  WP P+T +++  +   +        +    RVP     ++L   
Sbjct: 65  PYLRLNDQQAARLQQQWPAPVTYLVE--ANEHLPAWVRGQHRKVAVRVPDHPLARQLCNL 122

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   SAN SG+ +  N ++ ++  +  ++  I+ G   +    STI++++     R
Sbjct: 123 AGQPIISTSANISGRPAACN-RYQVARQLGDQLDFIVSGACDRASKPSTIIDLESG---R 178

Query: 191 ILRP 194
           ILRP
Sbjct: 179 ILRP 182


>gi|195953581|ref|YP_002121871.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933193|gb|ACG57893.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 192

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 23/209 (11%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYG-LAVDSRNPTAIRRLYEIKKRPAMNP 59
             +  I +   +  A   L+  +PI  PT+T+YG LA+D  N  A+  LY+I +RP+  P
Sbjct: 3   FDVKKINEEGVIDSAVYILNKNMPICSPTDTIYGVLALD--NEEALELLYKI-RRPSKKP 59

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +  + DI+ ++ +             F P      L  L    I  +  A  K+  FR+
Sbjct: 60  FLRLLPDIAFLEMYG------------FKPNDKVFELSKLEGVSI--IIKAQDKSLGFRI 105

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P  GF K+L++    P+  PS N+ G+    +++  + S    EI L ID G  +    S
Sbjct: 106 PQKGFIKELLDKLQKPILAPSCNKEGEPPAKSIEEAI-SYFKDEISLYIDSGFIE-SPPS 163

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           TIV ++ +  ++I+R  G+ I+ +K  I 
Sbjct: 164 TIVEIE-QNTIKIVR-EGMSIDKVKELIE 190


>gi|153004978|ref|YP_001379303.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028551|gb|ABS26319.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 235

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 6/194 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +A   L +G  +A PT+T YGL  D  +  AI R+Y++K+ P  + L     D++ 
Sbjct: 45  RVVERAVSVLSSGGLLAFPTDTYYGLGCDLFDKRAIERIYQLKQLPRSHELSFICQDLAE 104

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           + ++A VD  +  + +   PGP T +L   +T  +  L     KT   R+P      +++
Sbjct: 105 ISRYAIVDNAAYRVLRRKVPGPYTFILP--ATRLVPDLVLRRQKTVGIRIPDSPIALEIV 162

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              GHPL   SA   G   + +  H +   +   + L++DGG  K    S+++++   + 
Sbjct: 163 RRLGHPLISTSAATPGGEVLIDA-HDIKEQLGHGLDLVLDGGY-KPNEPSSVIDLSGAEP 220

Query: 189 VRILRPGGLEIETL 202
            R+LR G  ++  L
Sbjct: 221 -RVLRAGKGDVSDL 233


>gi|307822750|ref|ZP_07652981.1| SUA5/yciO/yrdC domain protein [Methylobacter tundripaludum SV96]
 gi|307736354|gb|EFO07200.1| SUA5/yciO/yrdC domain protein [Methylobacter tundripaludum SV96]
          Length = 185

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 4/180 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A   L AG  IA PTE VYGL  D  N  A+  L EIK+RP    LI   S +  ++
Sbjct: 9   IKNAVRHLKAGAVIAYPTEAVYGLGCDPLNEDAVMTLLEIKQRPIEKGLILIASSLEQLR 68

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +  +D   +      WPGP+T V+   +   +        ++   RV      + L   
Sbjct: 69  PYLVLDKTLIDRITPTWPGPVTWVIP--AQPWVPKWLRGEHQSLAVRVTNHPIARDLCAQ 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PL   SAN + + +I   + +L +    +I  I+ G + ++  E+ I +    K++R
Sbjct: 127 FGSPLVSTSANPTTRPAIKESRKLLKTFADADI-FIVHGKVGELAQETAIYDAVSGKRLR 185


>gi|311898378|dbj|BAJ30786.1| hypothetical protein KSE_50080 [Kitasatospora setae KM-6054]
          Length = 215

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 92/210 (43%), Gaps = 27/210 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ LR+A   +  G  + +PT+TVYGLA D+ +  A+  L   K R    P    V   S
Sbjct: 14  ASGLREAASAIRRGELVVVPTDTVYGLAADAFSAEAVAGLLAAKGRGRNMPSPVLVG--S 71

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117
               H  V   S     L   FWPG LTLV         DL  T            T   
Sbjct: 72  PTTLHGLVTDFSEQAWELVDAFWPGGLTLVARHQPSLRWDLGETR----------GTVAV 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      +L+   G PLA+ S N++G  S +       + +   + + +DGG +  G 
Sbjct: 122 RMPLHPVVLELLNATG-PLAVSSGNKTGGPSPSTCDEA-EAQLGDAVSIYLDGGTADYGT 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            STIV+V  +  V +LR G + +E L+  +
Sbjct: 180 PSTIVDVTGKVPV-VLRAGAISVEQLREVV 208


>gi|159902895|ref|YP_001550239.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888071|gb|ABX08285.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 196

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 101/210 (48%), Gaps = 20/210 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ+      N ++K    L+ G P+  PT+T+  LA   ++ +   +L+EIK R  M PL
Sbjct: 1   MQLSLFDSCNLVKK----LNEGSPVVFPTDTLPALAALPKHSS---QLWEIKNRSRMKPL 53

Query: 61  ICHVSDISMVKKHASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           I        + K    + L  ++++A  +WPGPLT+VL   S++++  L      +   R
Sbjct: 54  ILMGESPKQLFKFVYPNVLEDAIYMANRYWPGPLTMVLP--SSSNLVGLLNPGGSSIGLR 111

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKI 174
           +P C   KK +   G PLA  SAN SGQ    + + I  +      PL+  G I      
Sbjct: 112 IPECDLAKKFLAKSG-PLATTSANLSGQKPSIDPEEI--TKCFPGFPLL--GPIPWPKSS 166

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKR 204
           GL ST++  Q      ++R G +  E L++
Sbjct: 167 GLASTVIAWQGPGNWHLIRRGAVIPENLEK 196


>gi|332827684|gb|EGK00423.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 202

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 21/189 (11%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVSDISMVKKH 73
           D GL I  PT+TVY +  D+ N  A+ ++  +K    +NP      +IC+  D+S + ++
Sbjct: 24  DGGL-IVYPTDTVYAIGCDALNVRAVEKICRMKD---INPEKSNLSIICY--DLSNISEY 77

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A VD  +  L K   PGP T +   L+TT   P    N KT   R+P     ++L+ T G
Sbjct: 78  ARVDNNTFKLMKKNLPGPFTFI---LNTTSSLPKIYKNKKTVGIRIPDNNIIRELVHTLG 134

Query: 133 HPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           +P+   S     + I  T    ++       + ++IDGG    G+E STIV+   ++   
Sbjct: 135 NPIMTTSVKDDDEVIEYTTDPELIYERYQDLVDIVIDGGYG--GIEASTIVDCTGDEP-E 191

Query: 191 ILRPGGLEI 199
           I+R G  E+
Sbjct: 192 IMRQGKGEL 200


>gi|110832995|ref|YP_691854.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
 gi|123345894|sp|Q0VTD8|RIMN_ALCBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|110646106|emb|CAL15582.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
          Length = 182

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A + +  G  +A PTE+VYGL  D  N  A+ +L  IK RP    LI     ++ + 
Sbjct: 5   LLSAAQIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLA 64

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +  ++       +  WP P+T ++D  ++  +        +    RVP     ++L + 
Sbjct: 65  PYLHLNEQQSAQLEKKWPAPITYLVD--ASDRLPAWVRGEHRKVAVRVPDHPLARQLCQL 122

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   SAN SG+ +  N ++ ++  +  ++  I+ G   +    STI++++     R
Sbjct: 123 AGQPIISTSANISGRPAARN-RYQVARQLGNQLDFIVSGACDRAAKPSTIIDLESG---R 178

Query: 191 ILRP 194
           ILRP
Sbjct: 179 ILRP 182


>gi|150002664|ref|YP_001297408.1| putative translation factor [Bacteroides vulgatus ATCC 8482]
 gi|254882164|ref|ZP_05254874.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294776918|ref|ZP_06742379.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510]
 gi|319643278|ref|ZP_07997906.1| hypothetical protein HMPREF9011_03507 [Bacteroides sp. 3_1_40A]
 gi|149931088|gb|ABR37786.1| conserved hypothetical protein, putative translation factor
           [Bacteroides vulgatus ATCC 8482]
 gi|254834957|gb|EET15266.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294449166|gb|EFG17705.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510]
 gi|317385182|gb|EFV66133.1| hypothetical protein HMPREF9011_03507 [Bacteroides sp. 3_1_40A]
          Length = 191

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 6/185 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++ACE +  G  I  PT+T++G+  D+ NP A++R+Y+IKKR     ++  V     V 
Sbjct: 9   LKRACEVMQKGGVILYPTDTIWGIGCDATNPEAVKRVYDIKKRADSKAMLVLVDSTVKVN 68

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
            + S  P        F   PLT++ D     ++     A   +   RV    F+K+L   
Sbjct: 69  FYVSDVPAVAWDLIEFTTKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQLCFR 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKK 188
           +   +   SAN SGQ S  N   I S  + + +  I++    ++G    S+I+ +    +
Sbjct: 127 FRKAIVSTSANISGQPSPANFSEI-SEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGKGGE 185

Query: 189 VRILR 193
           V+I+R
Sbjct: 186 VKIIR 190


>gi|332886163|gb|EGK06407.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas mossii DSM 22836]
          Length = 202

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 21/189 (11%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVSDISMVKKH 73
           D GL I  PT+TVY +  D+ N   +R + EI K   +NP      +IC+  D+S + ++
Sbjct: 24  DGGL-IIYPTDTVYAIGCDALN---VRAVEEICKMKDINPAKSNLSIICY--DLSNISEY 77

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A VD     L K   PGP T +   L+TT   P    N KT   R+P     ++L+   G
Sbjct: 78  AKVDNAIFKLMKKNLPGPFTFI---LNTTSSLPKIYKNKKTVGIRIPDNNIIRELVRNLG 134

Query: 133 HPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           +P+   S     + +  T    ++      ++ ++IDGG    G+E ST+V+   ++   
Sbjct: 135 NPILTTSVKDEDEVVEYTTDPELIYEKYQDKVDIVIDGGFG--GIEGSTVVDCTSDEP-E 191

Query: 191 ILRPGGLEI 199
           I+R G  E+
Sbjct: 192 IIRQGKGEL 200


>gi|315604643|ref|ZP_07879706.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313655|gb|EFU61709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 224

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 7/212 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           + I       AL +A   L  G  + +PT+TVYG+  D+ N  A+  +   K R    P 
Sbjct: 10  LTIAPTVRDEALARAAAVLSNGGILVVPTDTVYGIGCDAANHEAVAEVLAAKGRGRQMPP 69

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
              V+ +  +      V   +  LA+ FWPG LTL+L            TA   T   R+
Sbjct: 70  PVLVASVDAIDTLCVDVPDAARALARAFWPGALTLILRARPDLGWDLGQTAG--TIGVRM 127

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +L++ +G P+A+ SAN +GQ   T V+  + +S    +   +DGG ++    S
Sbjct: 128 PNQDALLRLLKEFG-PMAVTSANLTGQPPATTVEQAV-ASFGARVGAYLDGGPTRASTAS 185

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL 210
           +I++     + R +R G + +E L     V +
Sbjct: 186 SIIDC-AHGEPRAIRLGAISLEELSSRAGVSI 216


>gi|297283021|ref|XP_002802371.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like,
           partial [Macaca mulatta]
          Length = 268

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 36/233 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 56  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 115

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTK 125
            V ++  V  +   L K   PGP+TLV++       D++P +         R+P   F +
Sbjct: 116 DVYRYCRVR-VPEGLLKDLLPGPVTLVMERSEELNKDLNPFT----PLVGIRIPDHAFMQ 170

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS------KIGLEST 179
            L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG        +  L ST
Sbjct: 171 DLAQMFEGPLALTSANLSSQASSLNVEEF--RDLWPQLSLVIDGGQIGGGQSPECRLGST 228

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSH 229
           +V++    K  I+RPG                 C  E++T    Q  G+L SH
Sbjct: 229 VVDLSVPGKFGIIRPG-----------------CALESTTAILQQKYGLLPSH 264


>gi|115451395|ref|NP_001049298.1| Os03g0201600 [Oryza sativa Japonica Group]
 gi|113547769|dbj|BAF11212.1| Os03g0201600 [Oryza sativa Japonica Group]
          Length = 183

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 44  AIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD 103
           A+ R+YEIK R    PL   V+D+  + + A VD L   L     PGP+T+VL   + + 
Sbjct: 13  AVNRIYEIKGRVQTRPLAICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSI 72

Query: 104 IHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
           +       L++   RVP   F + +    G  LA+ SAN SG  S  NVK      +   
Sbjct: 73  LERSLNPGLESIGVRVPDFDFIRAISRGAGSALALTSANLSGHPSSVNVKDF--EDLWPH 130

Query: 163 IPLIIDGGISKIG-LESTIVNVQCEKKVRILRPGGLEIET 201
              + DGGI   G   STIV++      +ILR G    ET
Sbjct: 131 CSYVFDGGILPSGRAGSTIVDLITPGVYKILRDGSSRQET 170


>gi|88601863|ref|YP_502041.1| Sua5/YciO/YrdC/YwlC [Methanospirillum hungatei JF-1]
 gi|88187325|gb|ABD40322.1| translation factor SUA5 [Methanospirillum hungatei JF-1]
          Length = 180

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 29/187 (15%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PT+T+YGL  D+ +  AI +++E K R    P+   VSD  M+   A VD ++    
Sbjct: 6   VVYPTDTLYGLGADALSDEAILKVFEAKGREYHKPISIAVSDPDMIGAVAYVDEMAEQFI 65

Query: 85  KLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
           + F PGP+TL+L   ++LST       TA  K    R P      +LI  Y  P+   SA
Sbjct: 66  EEFLPGPVTLILPARNILSTR-----LTAGTKKIGIRYPNHEVALELISRYDTPITATSA 120

Query: 141 NRSG-----QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           N SG      I + NV +  + ++         G +S  G  ST+V+++  + +R+    
Sbjct: 121 NLSGGPDPVTIDLCNVPYDCAVNV---------GPLS--GTPSTVVDLEFREIIRV---- 165

Query: 196 GLEIETL 202
           G +IE++
Sbjct: 166 GADIESV 172


>gi|56416667|ref|YP_153741.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries]
 gi|56387899|gb|AAV86486.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries]
          Length = 197

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 22/190 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +  PT+T+Y LA  + +  +++RLYEIK+R    P+   ++ ++ ++
Sbjct: 1   MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPC-GFTKKLIE 129
           K AS+      + +   PGP+T V+ L    D   L     + T   R+P     + ++E
Sbjct: 61  KFASLKDEDWGIIERLSPGPVTFVVPL---HDTQSLPGEFFRGTVGVRIPNHAMARTILE 117

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIV 181
            +G P+A  SAN SG         +  +    EIP  I   +S++        G+ ST+ 
Sbjct: 118 EFGGPVAATSANLSG---------MPGARRAMEIPQEIRDCVSELMEDDSAVGGMCSTVF 168

Query: 182 NVQCEKKVRI 191
           +VQ  K +RI
Sbjct: 169 DVQSRKVLRI 178


>gi|309812117|ref|ZP_07705875.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185]
 gi|308433804|gb|EFP57678.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185]
          Length = 305

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D  NP  +  L   K R    P    V + + V+  A SV   +  L
Sbjct: 30  VVLPTDTVYGVGADPFNPDGVAALLAAKGRGRDKPPAVLVPNPATVEGLAMSVPSYARRL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
              FWPG LTL+     +  +  L   N  T   R+P      +L++  G PLA+ SANR
Sbjct: 90  MDRFWPGGLTLIFRAQPSL-MWDLGDTN-GTVGLRMPDHEIALELLQATG-PLAVSSANR 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           +GQ  +T +      +    + + +DGG    GL STI++      V + R
Sbjct: 147 TGQPPVTTITEA-GFAFGPAVEVYLDGGTCDDGLPSTILDCTKPDPVMLRR 196


>gi|113968380|ref|YP_732173.1| translation factor SUA5 [Shewanella sp. MR-4]
 gi|114045545|ref|YP_736095.1| translation factor SUA5 [Shewanella sp. MR-7]
 gi|122945098|sp|Q0I0R7|RIMN_SHESR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123325544|sp|Q0HPA1|RIMN_SHESM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|113883064|gb|ABI37116.1| translation factor SUA5 [Shewanella sp. MR-4]
 gi|113886987|gb|ABI41038.1| translation factor SUA5 [Shewanella sp. MR-7]
          Length = 188

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G+ IA PTE VYGL  D  N TAI++L  +K+RP    LI   S+ S +  +     
Sbjct: 14  LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDYVDESQ 72

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           LS   L  A   WPGP T V+ +     +         +   RV      + L +  G P
Sbjct: 73  LSAEQLEFAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKP 130

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           L   SAN +G+    +   IL++   K I  ++ G + +    STI++ +  K +R
Sbjct: 131 LVSTSANLAGEDPALSGDEILNAFEGK-IDALVLGSLGEQRQPSTIIDARSGKILR 185


>gi|212288263|sp|A1S1K5|RIMN_SHEAM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 187

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---AS 75
           +++G  +A PTE VYGL  D  N TAI++L  +K+RP    LI   S    +K +   + 
Sbjct: 13  IESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLSR 72

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           V    L  A   WPGP T V+   +  D+ P+      T   RV      + +      P
Sbjct: 73  VTEAQLQAAFDKWPGPFTFVIP--AKADVSPMLRGCFDTIAVRVSAHQDVRAMCYACQKP 130

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           L   SAN +G+     +  +  + +  +I  ++ G + +    STI+++Q
Sbjct: 131 LVSTSANLAGEQPALTLAEV-QTQLGDKIDAVVLGALGQSCQPSTIIDIQ 179


>gi|218778786|ref|YP_002430104.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760170|gb|ACL02636.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 202

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 8/194 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L  G  IA PT+T+YG+  D  N  AI+++Y +K+  +  PL    SD+  + 
Sbjct: 15  IAQVVEVLKRGGIIAYPTDTIYGIGCDIMNKKAIQKVYRLKQMESTQPLSFICSDLQNIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A V   +    K   PGP T +L+  ++  +  +     KTA  RVP      ++I+ 
Sbjct: 75  DYAKVSNYAYKTMKRLLPGPYTFILE--ASKLVPKIMITKRKTAGIRVPEHAICMEIIKE 132

Query: 131 YGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            G+P ++  +A+  G   +     +L      +I L+IDGG    G  S++V++  + + 
Sbjct: 133 LGNPIISTSAADLDGNEFMD--PSLLHDYYNNQIDLVIDGGPVS-GRASSVVSL-IDDEP 188

Query: 190 RILRPGGLEIETLK 203
            +LR G  ++   +
Sbjct: 189 EVLRVGAGDVSIFE 202


>gi|33440306|ref|ZP_00141878.1| COG0009: Putative translation factor (SUA5) [Pasteuria nishizawae
           str. North American]
          Length = 150

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 2/112 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+++A + L  G  +A PTETVYGL   +   +AI+R++  K RP  NPLI H +++  
Sbjct: 28  TAIQEAAQCLQKGGVVAFPTETVYGLGALATRTSAIQRVFTAKNRPHDNPLILHFANVQR 87

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           + +     P +L  L +   PGP+T V+   +   + PL+TA+L T   RVP
Sbjct: 88  ILQALPSLPQALQNLLQSTMPGPITWVVP-HTIPWVSPLATASLPTIAVRVP 138


>gi|147790869|emb|CAN77236.1| hypothetical protein VITISV_024209 [Vitis vinifera]
          Length = 750

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD++A  +A E + AG  IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D
Sbjct: 616 TDAHA-EEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGD 674

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVL 96
           +  +++ A  D L   L     PGP+T+VL
Sbjct: 675 VLDIQRFAVTDHLPDGLLGSLLPGPVTVVL 704


>gi|222475032|ref|YP_002563447.1| hypothetical protein AMF_320 [Anaplasma marginale str. Florida]
 gi|255003012|ref|ZP_05277976.1| hypothetical protein AmarPR_01750 [Anaplasma marginale str. Puerto
           Rico]
 gi|269958915|ref|YP_003328704.1| putative translation factor [Anaplasma centrale str. Israel]
 gi|222419168|gb|ACM49191.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
 gi|269848746|gb|ACZ49390.1| putative translation factor [Anaplasma centrale str. Israel]
          Length = 197

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 22/190 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +  PT+T+Y LA  + +  +++RLYEIK+R    P+   ++ ++ ++
Sbjct: 1   MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVP-CGFTKKLIE 129
           K AS+      + +   PGP+T V+ L    D   L     + T   R+P     + ++E
Sbjct: 61  KFASLKDEDWGIIERLSPGPVTFVVPL---HDTQSLPGEFFRGTVGVRIPDHAMARTILE 117

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIV 181
            +G P+A  SAN SG         +  +    EIP  I   +S++        G+ ST+ 
Sbjct: 118 EFGGPVAATSANLSG---------MPGARRAMEIPQEIRDCVSELMEDDSAVGGMCSTVF 168

Query: 182 NVQCEKKVRI 191
           +VQ  K +RI
Sbjct: 169 DVQSRKVLRI 178


>gi|154151514|ref|YP_001405132.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000066|gb|ABS56489.1| Sua5/YciO/YrdC/YwlC family protein [Methanoregula boonei 6A8]
          Length = 190

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 13/169 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+T+YGL  D+ +  A+ ++YE KKR    P+   VSD  M+   +   P +    
Sbjct: 17  IVYPTDTLYGLGADAFSDEALEKVYEAKKRDLSKPISIAVSDFEMLAAVSHTTPFAEEFI 76

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           + F PGP+T+++ +     +  + +        R+P  G   ++IE +  P+   SAN S
Sbjct: 77  ERFLPGPVTVIVPVRKM--LPEILSGGTGMIGIRIPAHGVALQIIEKFDAPITATSANLS 134

Query: 144 GQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIVNVQCEKKVR 190
           G       K   +   C  +P  L +DGG    G  ST+V++  ++ VR
Sbjct: 135 GG------KDPQTPEECT-VPRDLFVDGG-RLAGKPSTVVDLTKKEIVR 175


>gi|119773191|ref|YP_925931.1| SUA5/YciO/YrdC-like protein [Shewanella amazonensis SB2B]
 gi|119765691|gb|ABL98261.1| translation factor SUA5 [Shewanella amazonensis SB2B]
          Length = 190

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 7/170 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---AS 75
           +++G  +A PTE VYGL  D  N TAI++L  +K+RP    LI   S    +K +   + 
Sbjct: 16  IESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPYIDLSR 75

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           V    L  A   WPGP T V+   +  D+ P+      T   RV      + +      P
Sbjct: 76  VTEAQLQAAFDKWPGPFTFVIP--AKADVSPMLRGCFDTIAVRVSAHQDVRAMCYACQKP 133

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           L   SAN +G+     +  +  + +  +I  ++ G + +    STI+++Q
Sbjct: 134 LVSTSANLAGEQPALTLAEV-QTQLGDKIDAVVLGALGQSCQPSTIIDIQ 182


>gi|289547987|ref|YP_003472975.1| Sua5/YciO/YrdC/YwlC family protein [Thermocrinis albus DSM 14484]
 gi|289181604|gb|ADC88848.1| Sua5/YciO/YrdC/YwlC family protein [Thermocrinis albus DSM 14484]
          Length = 201

 Score = 65.9 bits (159), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 20/211 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + ++ S   R A   L+ G+  A PT+T+YGL  ++ +  A+ RL+ I+ RP+  P +  
Sbjct: 3   LVVSPSKVFRVAEVILEGGIAFA-PTDTIYGLLANALDRRAVERLFAIR-RPSGRPFLL- 59

Query: 64  VSDISMVKKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                ++ +   ++ L L +     KL   G +TLV+   ++  ++   T   K+   R+
Sbjct: 60  -----LIPQEDWIEELGLIIGPRQRKLLSLG-ITLVIPKRTSVPLY--LTRGRKSLAVRL 111

Query: 120 P---CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           P    GF + L++  G PL  PSAN  G    T+VK  + +   + + + +D G   +G 
Sbjct: 112 PSSTAGFIRDLLKVVGVPLVAPSANPEGLKPATSVKEGM-AYFGRRVNIYVDAG-KIVGK 169

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            STIV +   + VR++R G +    + R +S
Sbjct: 170 PSTIVRLIGYRSVRLVREGNVPFREVLRFLS 200


>gi|258622997|ref|ZP_05718012.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM573]
 gi|258584780|gb|EEW09514.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM573]
          Length = 185

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L +G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   ++   ++
Sbjct: 4   LQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63

Query: 72  KHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLST--ANLKTACFRVPCG-FTK 125
            +   + L+   LA++   WP PLT V+       IH  S       T   RV      +
Sbjct: 64  PYIDENQLTADQLAQVLASWPAPLTWVM----PASIHTPSWVRGQFDTVAVRVSNHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G PL   SAN SGQ + T  + ++ + +  +I  +++G  S     S I +   
Sbjct: 120 QLCLAFGKPLTSTSANLSGQPACTTQQEVV-AQLGNQIETLLEGKTSGHCGPSEIRDA-- 176

Query: 186 EKKVRILRPG 195
            + +++LR G
Sbjct: 177 -RSLQVLRQG 185


>gi|254994878|ref|ZP_05277068.1| hypothetical protein AmarM_01965 [Anaplasma marginale str.
           Mississippi]
          Length = 197

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 22/190 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +  PT+T+Y LA  + +  +++RLYEIK+R    P+   ++ ++ ++
Sbjct: 1   MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVP-CGFTKKLIE 129
           K AS+      + +   PGP+T V+ L    D   L     + T   R+P     + ++E
Sbjct: 61  KFASLKDEDWGIIERLSPGPVTFVVPL---HDTQSLPGEFFRGTVGVRIPDHAMARTILE 117

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIV 181
            +G P+A  SAN SG         +  +    EIP  I   +S++        G+ ST+ 
Sbjct: 118 EFGGPVAATSANLSG---------MPGARRAMEIPREIRDCVSELMEDDSAVGGMCSTVF 168

Query: 182 NVQCEKKVRI 191
           +VQ  K +RI
Sbjct: 169 DVQSRKVLRI 178


>gi|118089561|ref|XP_420283.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 687

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ LR   + L+ G    +PT+TVY LA   R+P AI ++Y IK RP   P+   +S++ 
Sbjct: 475 TSGLRTIADLLNTGAVCGVPTDTVYALAASCRHPQAIEKVYRIKDRPQEKPICIFISNLD 534

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLST--ANLKTACFRVP-C 121
            ++  A  + PL     +  +PG +  ++   + L    +    +      +   RVP  
Sbjct: 535 QLRAAAPPISPLLWEFMENVYPGGVGCIIKKGEWLKKLGVGEGYSRVGTQDSIMIRVPDL 594

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI+  G PLAI SAN SG++  T+   ++S    K   ++ DG   ++ + ST+V
Sbjct: 595 TVLVHLIDMTG-PLAITSANPSGEVDSTHHDMVISRLGHKLEGVLCDGESDEV-VASTVV 652

Query: 182 NVQ--CEKKVRILRPG 195
           N     E  + ILR G
Sbjct: 653 NCTRIDESGITILREG 668


>gi|301064000|ref|ZP_07204465.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
 gi|300441911|gb|EFK06211.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
          Length = 209

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 10/161 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L+ G  IA PT+T YG+  D  N   I+ +Y +K RP   P       ++ + 
Sbjct: 28  IDRVSEILEQGGVIAYPTDTFYGIGCDLYNKKGIQHIYRLKNRPLKKPFSFVCDGLNEIS 87

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           K+A V   +    K   PGP T +L+   T  +  +     KT   RVP    T+ ++ T
Sbjct: 88  KYALVSNYAYKTMKRLLPGPYTFILE--GTRLVPKIMLTKRKTVGIRVPNNNITRAIVRT 145

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            G P+   SA      +I +   +        + +IIDGG+
Sbjct: 146 LGRPIISTSAGFDEPRAIEDAYGV-------NLDVIIDGGL 179


>gi|163751675|ref|ZP_02158894.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99]
 gi|161328414|gb|EDP99570.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99]
          Length = 185

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 6/133 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E ++ G  IA PTE VYGL  D  N  AI +L  +K+RP    LI   SD S +  +   
Sbjct: 11  ELIENGGVIAYPTEAVYGLGCDPDNDVAIEKLLGLKQRPWQKGLILVASDYSQLAPYLDD 70

Query: 77  DPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
             L+   L  +F  WPGP T ++ + S  DI  L   +  +   RV      + +    G
Sbjct: 71  TQLTTKQLESVFSKWPGPFTFIMPIRS--DISKLLCGSFNSLAVRVSAHPGIQAICNNLG 128

Query: 133 HPLAIPSANRSGQ 145
            PL   SAN +GQ
Sbjct: 129 KPLVSTSANITGQ 141


>gi|261349624|ref|ZP_05975041.1| Sua5/YciO/YrdC/YwlC family protein [Methanobrevibacter smithii DSM
           2374]
 gi|288861582|gb|EFC93880.1| Sua5/YciO/YrdC/YwlC family protein [Methanobrevibacter smithii DSM
           2374]
          Length = 193

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-- 65
           D   + +A + L  G  I  PT+TVYGL  +  N  A++R+Y IKKR  + P+   VS  
Sbjct: 12  DKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSYLKPISLLVSSK 71

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVP---- 120
           D   +   ASV+   L+    + PGP T +L        H  S +AN+     RVP    
Sbjct: 72  DAIPLVSRASVN--QLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANV---GIRVPESEI 126

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C   K        P+   SAN S + ++   + IL    C E+ L+ID G  K    ST
Sbjct: 127 ACNLAKLF------PITTTSANISSENTLDTPEEILEQLGC-EVDLVIDVGPLKSKNPST 179

Query: 180 IVNVQCEKKVRILR 193
           I+++  E+ + + R
Sbjct: 180 IIDLTAEEPIFVKR 193


>gi|283458330|ref|YP_003362951.1| putative translation factor [Rothia mucilaginosa DY-18]
 gi|283134366|dbj|BAI65131.1| putative translation factor [Rothia mucilaginosa DY-18]
          Length = 424

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A E L A   I +PT+TVYG+A D+ +   + +L   K R    P    + D++ 
Sbjct: 45  EAIEAAREALKAHDTIVMPTDTVYGIAADAFSHQGVAKLLADKGRDRTMPPPVLIFDLAA 104

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-F 123
           +       P  ++ L   FWPG LT++L        +P  + +L     T   RVP   F
Sbjct: 105 LAGVVDDVPNDIYDLGGRFWPGALTMIL------HAYPSLSWDLGETRGTVAVRVPDDEF 158

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
             KL+  +G PLA+ SAN++G  +  + +  +  S+ +++ ++IDGG     LES
Sbjct: 159 ALKLLTEHG-PLAVSSANKTGHEAALDAQTAM-DSLGEDVAVVIDGGARPKPLES 211


>gi|111018482|ref|YP_701454.1| hypothetical protein RHA1_ro01481 [Rhodococcus jostii RHA1]
 gi|110818012|gb|ABG93296.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 218

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +  A   L AG  + +PT+T+YG+  D+ +  A+  L   K R    P+   V   +
Sbjct: 14  SAGMSAAKNALKAGRLVVLPTDTLYGIGADAFDSEAVAALLRAKGRGRDMPVPVLVGSWN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +     SV P +  L + FWPG L+LV++   +       T    T   R+P      +
Sbjct: 74  TIDGLVYSVRPQTRDLIRAFWPGGLSLVVEQAPSLAWDLGDTRG--TVMLRMPLHPVALE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PLA+ SAN SGQ   T V+      +     + +DGG ++ G  STIV++   
Sbjct: 132 LLREVG-PLAVSSANVSGQPPATTVEEA-REQLGGSASVYLDGGRAEQGQASTIVDLTGA 189

Query: 187 KKVRILRPGGLEIETLKRAISVELE 211
              RILR G +    +   + V  E
Sbjct: 190 TP-RILREGAVPTGDVADVLGVTAE 213


>gi|307708641|ref|ZP_07645104.1| Sua5/YciO/YrdC family protein [Streptococcus mitis NCTC 12261]
 gi|307615215|gb|EFN94425.1| Sua5/YciO/YrdC family protein [Streptococcus mitis NCTC 12261]
          Length = 140

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++ +  +   +   P
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDILHFSKNQP 68

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI   G PL 
Sbjct: 69  TYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIRETG-PLI 125

Query: 137 IPSANRSGQIS 147
            PSAN SGQ S
Sbjct: 126 GPSANISGQAS 136


>gi|218885947|ref|YP_002435268.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756901|gb|ACL07800.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 218

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 15/205 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDIS 68
           L  A   L AG  +  PTET +G+   + +  A+  +Y +K+R    A+  ++ HV  ++
Sbjct: 13  LDDAAALLRAGRVVVFPTETFFGVGCLATHAGAVDEVYRVKRRAHRLALPVIVGHVDQLT 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            V   A +  ++  LA+ FWPGPL+++L         PL+    + A    P    ++L 
Sbjct: 73  QVA--APMGHVAEGLARRFWPGPLSILLPAAPGVP-EPLTGGTGRVAVRLTPHPAARELC 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNV---- 183
              G PL   SAN SG+ ++T     L   +  E+  ++D       GL ST+V V    
Sbjct: 130 LRAGGPLVASSANISGRPAVTRAMD-LDPELLAEVAGVLDLPPAPPGGLPSTLVEVLDGG 188

Query: 184 ---QCEKKVRILRPGGLEIETLKRA 205
                  ++R+LR G + ++ L  A
Sbjct: 189 CIGDGAPRLRVLRAGAVSVQALSDA 213


>gi|148642672|ref|YP_001273185.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445831|ref|ZP_03608346.1| hypothetical protein METSMIALI_01475 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551689|gb|ABQ86817.1| putative translation factor, Sua5/YciO/YrdC/YwlC family
           [Methanobrevibacter smithii ATCC 35061]
 gi|222435396|gb|EEE42561.1| hypothetical protein METSMIALI_01475 [Methanobrevibacter smithii
           DSM 2375]
          Length = 193

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-- 65
           D   + +A + L  G  I  PT+TVYGL  +  N  A++R+Y IKKR  + P+   VS  
Sbjct: 12  DKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSYLKPISLLVSSK 71

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVP---- 120
           D   +   ASV+   L+    + PGP T +L        H  S +AN+     RVP    
Sbjct: 72  DAIPLVSRASVN--QLNFMDKYLPGPYTFILKKSKIVPRHLTSGSANV---GIRVPESEI 126

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C   K        P+   SAN S + ++   + IL    C E+ L+ID G  K    ST
Sbjct: 127 ACNLAKLF------PITTTSANISSENTLDTPEEILKQLGC-EVDLVIDVGPLKSKNPST 179

Query: 180 IVNVQCEKKVRILR 193
           I+++  E+ + + R
Sbjct: 180 IIDLTAEEPIFVKR 193


>gi|150025693|ref|YP_001296519.1| translation factor [Flavobacterium psychrophilum JIP02/86]
 gi|149772234|emb|CAL43710.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86]
          Length = 188

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A E +  G  I  PT+TV+G+  D+ NP A+ ++Y++K+R     +IC ++   
Sbjct: 4   NQEIHNAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMICLMNGEK 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127
           M+       P            P TL+LD  +  +I P   A  KT   R V   F  KL
Sbjct: 64  MMYNVFKDIPEVAWQIMDVSEKPTTLILD--NPRNIAPNLIATDKTLGIRIVKEPFCFKL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186
           +E    PL   SAN SGQ +    K I S  I K +  +++    KIG + STI+ +  +
Sbjct: 122 LERMKKPLVSTSANISGQPTPIAFKDI-SPEILKGVDYVVNLHHEKIGGKPSTIIKLTND 180

Query: 187 KKVRILR 193
            +V+++R
Sbjct: 181 SQVKVIR 187


>gi|94499923|ref|ZP_01306459.1| Sua5/YciO/YrdC/YwlC family protein [Oceanobacter sp. RED65]
 gi|94428124|gb|EAT13098.1| Sua5/YciO/YrdC/YwlC family protein [Oceanobacter sp. RED65]
          Length = 182

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 21/187 (11%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV--- 70
           +A + L     IA PTETV+GL  D  +P A++R+  IKKR     LI    +I      
Sbjct: 7   QASKVLQHSGVIAYPTETVWGLGCDPWDPAALQRIVSIKKRDQHKGLILVAGNIGQFDFL 66

Query: 71  ------KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGF 123
                 ++ A ++ L        WPGP T ++       + PL      T   RV P   
Sbjct: 67  LNEINEQQRAKLESL--------WPGPYTFLVP--HKNRVQPLVHGRFSTVAIRVSPHPR 116

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + L + +G P+   SAN SGQ ++ +        +  E+  I+DG +      S I+++
Sbjct: 117 VQALCKYFGGPIVSTSANYSGQPTVRSAVQA-RRVLGHELDFILDGPVGLFPGPSHIIDL 175

Query: 184 QCEKKVR 190
              +++R
Sbjct: 176 ASGRQLR 182


>gi|227832891|ref|YP_002834598.1| hypothetical protein cauri_1065 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182620|ref|ZP_06042041.1| hypothetical protein CaurA7_01395 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453907|gb|ACP32660.1| hypothetical protein cauri_1065 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 225

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 9/190 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83
           + +PT+T+YGL  D+ +  A+  L   K R    P+   V     VK   AS+D  +  L
Sbjct: 31  VVMPTDTLYGLGCDAFDNDAVASLLATKHRGPDMPVPVLVGSWDTVKGLVASLDDTAQTL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141
            + FWPG L++V+    +    P +  + + T   R+P      +L+   G P+A+ SAN
Sbjct: 91  IEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSAN 146

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SGQ   T         + K + + +DGG +++G  STI+++       +LR G L  E 
Sbjct: 147 ISGQTPPTTAIAA-KQQLGKAVTVYLDGGEAEVGKPSTIIDLSGPHPY-LLREGALSAEQ 204

Query: 202 LKRAISVELE 211
           +   I V  E
Sbjct: 205 IGEVIGVSAE 214


>gi|120602852|ref|YP_967252.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris DP4]
 gi|120563081|gb|ABM28825.1| translation factor SUA5 [Desulfovibrio vulgaris DP4]
          Length = 223

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 18/191 (9%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMV 70
            A   L  G  +  PTET +G+  D R+  A+  ++  K+R    A+  ++   S + MV
Sbjct: 24  DAVRLLAGGGVLVYPTETFFGIGCDVRDARAVDAVFRAKRRQSGMALPVILGDASQLGMV 83

Query: 71  -KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            + H +V+     LA+ FWPGPL+++   L       L+    + A    P      L  
Sbjct: 84  TRGHGAVE---AALARDFWPGPLSILCPALPELP-DTLTGGTGRVAVRVSPHPAAMALAL 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVNVQ 184
             G PLA  SAN SG+ ++  V     + + +E+   +DG          GL ST+V+V 
Sbjct: 140 GLGAPLAASSANVSGRAAVVRV-----ADLDRELLSGVDGVYDAPPQPAGGLPSTLVDVL 194

Query: 185 CEKKVRILRPG 195
            +  +RILR G
Sbjct: 195 TDGTLRILREG 205


>gi|328948017|ref|YP_004365354.1| Sua5/YciO/YrdC/YwlC family protein [Treponema succinifaciens DSM
           2489]
 gi|328448341|gb|AEB14057.1| Sua5/YciO/YrdC/YwlC family protein [Treponema succinifaciens DSM
           2489]
          Length = 193

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 16/196 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR-----RLYEIKKRPAMNPLIC 62
           +  + R A +FL  G    +PT+TVYG +  + N    +     ++ +IK R    P I 
Sbjct: 6   NEESARIAADFLKCGKICVLPTDTVYGFSGIAENSLQAKFGTDAKIRKIKGREEKKPFIQ 65

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            VS    + K++    +   LA+  WPG LT+++ L       P S  N  T  FR P  
Sbjct: 66  LVSSPDEISKYSDFK-IPEQLAQK-WPGALTVIVPLK-----FPFSEKN-ATVAFRCPGD 117

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            + + +I   G P+   S NRSG   + +V  I       E+ LI+D G  K  L STIV
Sbjct: 118 LWLRNVIAECGFPIYSTSVNRSGSPVLDSVCKI-EKEFSNEVDLIVDDGDKKGSLPSTIV 176

Query: 182 NVQCEKKVRILRPGGL 197
            ++     ++LR G +
Sbjct: 177 LLK-NDGWKVLRQGSV 191


>gi|322368033|ref|ZP_08042602.1| Sua5/YciO/YrdC/YwlC family protein [Haladaptatus paucihalophilus
           DX253]
 gi|320552049|gb|EFW93694.1| Sua5/YciO/YrdC/YwlC family protein [Haladaptatus paucihalophilus
           DX253]
          Length = 204

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 9/188 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + L +A   +  G  +  PTETVYGL  D+ +PTAI R+++ K R    P+   V D+ 
Sbjct: 12  EDELERAATAMRDGHLVVYPTETVYGLGADALDPTAIERVFDAKGRARDKPISLAVPDVE 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKL 127
             + +       L   + F PGP+T+   L    DI P + T        R+P       
Sbjct: 72  TARNYVRPTERELAFMEAFLPGPVTV---LCEKRDIVPDVLTGGRSRVGVRIPDQPVALS 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +  P+   SAN SG+ S+T +   L   I      +ID G    G  ST+VNV   K
Sbjct: 129 LLRHVAPITSTSANVSGRGSVTCIDD-LDDEIRDAAECVID-GGETGGTGSTVVNV---K 183

Query: 188 KVRILRPG 195
           +  ILR G
Sbjct: 184 QGEILRRG 191


>gi|312194812|ref|YP_004014873.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EuI1c]
 gi|311226148|gb|ADP79003.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EuI1c]
          Length = 218

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 15/199 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDI 67
            L  A   +  G  + +PT+TVYGL  D+ + +A+R L   K R    P   LI     +
Sbjct: 15  GLEAAASAVGRGDLVVLPTDTVYGLGADAFDASAVRALLATKNRGRNMPVPVLIGSWRTL 74

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
             +  H S+ P+   L + FWPG LT+++       +      +  T   R+P       
Sbjct: 75  DGLVSHVSM-PVR-ELTRAFWPGGLTVIVR--QAPSLRWDLGESRGTVAVRMP--LHPVA 128

Query: 128 IETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           I+  G   P+A+ SAN SGQ + T     + + + +++ + +D G +  G+ STIV+  C
Sbjct: 129 IDLLGRTGPMAVSSANLSGQPAATTADEAV-AQLGEQVDVYLDAGPATHGVASTIVD--C 185

Query: 186 EKKV-RILRPGGLEIETLK 203
              V R++R G +++ TL+
Sbjct: 186 TTDVPRVVRLGAIDLPTLR 204


>gi|289706367|ref|ZP_06502725.1| Sua5/YciO/YrdC/YwlC family protein [Micrococcus luteus SK58]
 gi|289556862|gb|EFD50195.1| Sua5/YciO/YrdC/YwlC family protein [Micrococcus luteus SK58]
          Length = 243

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 17/204 (8%)

Query: 10  NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           NA+ +A E L D G  + +PT+TVYG+  D+ +P A+  L   K R    P    ++D  
Sbjct: 18  NAVARAREVLADRGC-VVLPTDTVYGIGADAFSPLAVAVLLAAKGRSRTMPPPVLIADRR 76

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVP-CG 122
           ++   A   P     LA+ FWPG LTL+L         P  T +L     T   RVP   
Sbjct: 77  VMSGLAYDVPEEAEALAERFWPGALTLIL------KSQPTLTWDLGETRGTVALRVPDDA 130

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++L+   G P+A+ SANR+G +          S + + + L +D G  +    STIV+
Sbjct: 131 VARELLYAVG-PMAVSSANRTG-MDAATTADAARSMLGESVALYLDAGPRESRDPSTIVD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
                  R+ R G + +E L+  +
Sbjct: 189 CTV-TPFRVARQGSVPLEELRAVV 211


>gi|261823196|ref|YP_003261302.1| SUA5/yciO/yrdC domain protein [Pectobacterium wasabiae WPP163]
 gi|261607209|gb|ACX89695.1| SUA5/yciO/yrdC domain protein [Pectobacterium wasabiae WPP163]
          Length = 189

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D S +  +     LS    
Sbjct: 22  IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLVPYIDDSALSDEQK 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPGP+T VL    TT      T    +   RV      K+L + YG PL   SA
Sbjct: 82  AVMFSTWPGPVTWVLPAKHTTP--QWLTGQFSSLAVRVSGHPLVKELCQRYGKPLVSTSA 139

Query: 141 NRSGQISITNVKHILSSSICKEIPLII 167
           N SGQ      + + S     + P+++
Sbjct: 140 NLSGQPPCRTAQEV-SQQFGDDFPVLV 165


>gi|307212489|gb|EFN88220.1| YrdC domain-containing protein, mitochondrial [Harpegnathos
           saltator]
          Length = 243

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 4/134 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L     IA+PT+T+YGLA  + +  AI RLY+IKKR    P+   +S++  V + A
Sbjct: 41  AATLLQQNKVIAVPTDTIYGLACLASSTEAIERLYQIKKRDERKPVAICLSNVKDVTQWA 100

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             D L   L +   PGP T++L     ++++P    ++     RVP   F + + +  G 
Sbjct: 101 VTDNLPSCLLEKLLPGPYTIILK--HKSNLNPALNPDIDNIGIRVPSSRFMRSIAKIVG- 157

Query: 134 PLAIPSANRSGQIS 147
           P+A+ SAN S + S
Sbjct: 158 PIALTSANISNKPS 171


>gi|46579666|ref|YP_010474.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449081|gb|AAS95733.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233463|gb|ADP86317.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris RCH1]
          Length = 210

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 20/192 (10%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---AMNPLICHVSDISMV 70
            A   L  G  +  PTET +G+  D R+  A+  ++  K+R    A+  ++   S + MV
Sbjct: 11  DAVRLLAGGGVLVYPTETFFGIGCDVRDARAVDAVFRAKRRQSGMALPVILGDASQLGMV 70

Query: 71  -KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128
            + H +V+     LA+ FWPGPL+++   L   ++    T        RV P      L 
Sbjct: 71  TRGHGAVE---AALARDFWPGPLSILCPALP--ELPDTLTGGTGRVAVRVSPHPAAMALA 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVNV 183
              G PLA  SAN SG+ ++  V     + + +E+   +DG          GL ST+V+V
Sbjct: 126 LGLGAPLAASSANVSGRAAVVRV-----ADLDRELLSGVDGVYDAPPQPAGGLPSTLVDV 180

Query: 184 QCEKKVRILRPG 195
             +  +RILR G
Sbjct: 181 LTDGTLRILREG 192


>gi|86158113|ref|YP_464898.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774624|gb|ABC81461.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 231

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L +G  IA PT+T YG+  D  +  AI R+Y++K+ P  + L     D++ + 
Sbjct: 43  IERAVSALSSGGVIAYPTDTFYGIGCDLFDKRAIERIYQLKQLPRTHELAFICQDLAEIS 102

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           ++A VD  +  + +   PGP T +L   +T  +  L     KT   R+P      +L+  
Sbjct: 103 RYAIVDNAAYRVLRRKVPGPFTFILP--ATRLVPELVLRRQKTVGIRIPDSPIALELVRR 160

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            GHPL   SA R     + + + I    +   + LI+D G 
Sbjct: 161 LGHPLISTSAARPDGDVLIDARDI-KEELGHGLDLILDAGF 200


>gi|49483139|ref|YP_040363.1| hypothetical protein SAR0941 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425028|ref|ZP_05601455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427692|ref|ZP_05604091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430327|ref|ZP_05606710.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433024|ref|ZP_05609384.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435928|ref|ZP_05611976.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903515|ref|ZP_06311406.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905293|ref|ZP_06313150.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908272|ref|ZP_06316103.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910553|ref|ZP_06318357.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913751|ref|ZP_06321539.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916229|ref|ZP_06323991.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282923728|ref|ZP_06331406.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|283770045|ref|ZP_06342937.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|293500791|ref|ZP_06666642.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509744|ref|ZP_06668454.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526330|ref|ZP_06671016.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427461|ref|ZP_06820095.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590179|ref|ZP_06948818.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241268|emb|CAG39947.1| hypothetical protein SAR0941 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272598|gb|EEV04721.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275885|gb|EEV07358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279104|gb|EEV09715.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257282439|gb|EEV12574.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285119|gb|EEV15238.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314115|gb|EFB44506.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|282319669|gb|EFB50017.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282322363|gb|EFB52686.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325945|gb|EFB56253.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327937|gb|EFB58219.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331700|gb|EFB61212.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596470|gb|EFC01431.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|283460192|gb|EFC07282.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|290920872|gb|EFD97934.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095796|gb|EFE26057.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467419|gb|EFF09935.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128597|gb|EFG58229.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576478|gb|EFH95193.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438658|gb|ADQ77729.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194510|gb|EFU24902.1| hypothetical protein CGSSa00_12335 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 213

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 31/210 (14%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +    D  +   + +
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            + +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I     P+
Sbjct: 78  TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPI 134

Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           AI SAN SG    I IT          NV+++L S              +     STI+ 
Sbjct: 135 AITSANISGTANDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212
           V  + K+ +LR G ++ E +K  +   + Y
Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212


>gi|15923968|ref|NP_371502.1| hypothetical protein SAV0978 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926567|ref|NP_374100.1| hypothetical protein SA0838 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282589|ref|NP_645677.1| hypothetical protein MW0860 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485754|ref|YP_042975.1| hypothetical protein SAS0848 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651669|ref|YP_185850.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161016|ref|YP_493580.1| hypothetical protein SAUSA300_0880 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194672|ref|YP_499468.1| hypothetical protein SAOUHSC_00915 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267411|ref|YP_001246354.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393464|ref|YP_001316139.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221060|ref|YP_001331882.1| hypothetical protein NWMN_0848 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979304|ref|YP_001441563.1| hypothetical protein SAHV_0973 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509177|ref|YP_001574836.1| hypothetical protein USA300HOU_0936 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253316139|ref|ZP_04839352.1| hypothetical protein SauraC_08342 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731585|ref|ZP_04865750.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253732664|ref|ZP_04866829.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005767|ref|ZP_05144368.2| hypothetical protein SauraM_04840 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795288|ref|ZP_05644267.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9781]
 gi|258406937|ref|ZP_05680090.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9763]
 gi|258421905|ref|ZP_05684826.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258435302|ref|ZP_05689041.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258441514|ref|ZP_05690874.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A8115]
 gi|258447213|ref|ZP_05695362.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258449973|ref|ZP_05698071.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A6224]
 gi|258452071|ref|ZP_05700087.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258455486|ref|ZP_05703445.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262049328|ref|ZP_06022202.1| hypothetical protein SAD30_1626 [Staphylococcus aureus D30]
 gi|262052998|ref|ZP_06025175.1| hypothetical protein SA930_1983 [Staphylococcus aureus 930918-3]
 gi|282894004|ref|ZP_06302235.1| hypothetical protein SGAG_01355 [Staphylococcus aureus A8117]
 gi|282922257|ref|ZP_06329952.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282927200|ref|ZP_06334822.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|284023904|ref|ZP_06378302.1| hypothetical protein Saura13_04914 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294847966|ref|ZP_06788713.1| hypothetical protein SKAG_00021 [Staphylococcus aureus A9754]
 gi|295405784|ref|ZP_06815593.1| hypothetical protein SMAG_00940 [Staphylococcus aureus A8819]
 gi|296276110|ref|ZP_06858617.1| hypothetical protein SauraMR_07162 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208388|ref|ZP_06924818.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297245375|ref|ZP_06929246.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus A8796]
 gi|300912464|ref|ZP_07129907.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381469|ref|ZP_07364119.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13700782|dbj|BAB42078.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246747|dbj|BAB57140.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204027|dbj|BAB94725.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244197|emb|CAG42623.1| hypothetical protein SAS0848 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285855|gb|AAW37949.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126990|gb|ABD21504.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202230|gb|ABD30040.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740480|gb|ABQ48778.1| SUA5/yciO/yrdC, N-terminal domain [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945916|gb|ABR51852.1| SUA5/yciO/yrdC domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373860|dbj|BAF67120.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721439|dbj|BAF77856.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160367986|gb|ABX28957.1| hypothetical protein USA300HOU_0936 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724584|gb|EES93313.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253729442|gb|EES98171.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257789260|gb|EEV27600.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9781]
 gi|257841476|gb|EEV65917.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9763]
 gi|257842238|gb|EEV66666.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257848963|gb|EEV72946.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257852304|gb|EEV76230.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A8115]
 gi|257853961|gb|EEV76915.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257856893|gb|EEV79796.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A6224]
 gi|257860286|gb|EEV83118.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257862304|gb|EEV85073.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159091|gb|EEW44158.1| hypothetical protein SA930_1983 [Staphylococcus aureus 930918-3]
 gi|259162560|gb|EEW47128.1| hypothetical protein SAD30_1626 [Staphylococcus aureus D30]
 gi|269940479|emb|CBI48856.1| hypothetical protein SATW20_09770 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282590889|gb|EFB95964.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282593547|gb|EFB98541.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282763490|gb|EFC03619.1| hypothetical protein SGAG_01355 [Staphylococcus aureus A8117]
 gi|285816657|gb|ADC37144.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus 04-02981]
 gi|294824766|gb|EFG41188.1| hypothetical protein SKAG_00021 [Staphylococcus aureus A9754]
 gi|294969219|gb|EFG45239.1| hypothetical protein SMAG_00940 [Staphylococcus aureus A8819]
 gi|296887127|gb|EFH26030.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297177678|gb|EFH36928.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus A8796]
 gi|298694217|gb|ADI97439.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886710|gb|EFK81912.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304339832|gb|EFM05776.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829374|emb|CBX34216.1| yrdC domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130441|gb|EFT86428.1| hypothetical protein CGSSa03_03433 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197330|gb|EFU27668.1| hypothetical protein CGSSa01_00481 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141206|gb|EFW33053.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143263|gb|EFW35053.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313645|gb|AEB88058.1| SUA5/yciO/yrdC, N-terminal domain protein [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329726220|gb|EGG62690.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329728282|gb|EGG64721.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329729046|gb|EGG65458.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 213

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 31/210 (14%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +    D  +   + +
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            + +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I     P+
Sbjct: 78  TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPI 134

Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           AI SAN SG    I IT          NV+++L S              +     STI+ 
Sbjct: 135 AITSANISGTADDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212
           V  + K+ +LR G ++ E +K  +   + Y
Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212


>gi|150009964|ref|YP_001304707.1| hypothetical protein BDI_3382 [Parabacteroides distasonis ATCC
           8503]
 gi|255012773|ref|ZP_05284899.1| hypothetical protein B2_02632 [Bacteroides sp. 2_1_7]
 gi|149938388|gb|ABR45085.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 200

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 18/200 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LI 61
           +   + K  + L  G  +  PT+TVY +  D+ N  A+ ++ ++K    +NP      +I
Sbjct: 11  NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMK---GVNPQKSNLSII 67

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
           C+  D+S + ++A V   +  L K   PGP T +   L T+   P    N K    RVP 
Sbjct: 68  CY--DLSNLSEYAKVSNAAFKLMKKHLPGPFTFI---LPTSSELPKIYKNRKEVGIRVPD 122

Query: 121 CGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              T+ L+++ G+P L +   ++   I  T    ++      ++ ++IDGG    GLE++
Sbjct: 123 NNITRTLVQSLGNPILTMSIRDKDEVIEYTTDPELIHEKYEHQVDIVIDGGFG--GLEAS 180

Query: 180 IVNVQCEKKVRILRPGGLEI 199
            V         I+R G  E+
Sbjct: 181 TVIDCTTDNFEIVRQGKGEL 200


>gi|262384492|ref|ZP_06077626.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B]
 gi|301309113|ref|ZP_07215057.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3]
 gi|262293785|gb|EEY81719.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B]
 gi|300832795|gb|EFK63421.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3]
          Length = 186

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 31/165 (18%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KACE + AG  I  PT+T++G+  D+ N  A++R+YE+K+R     ++       ++ 
Sbjct: 5   IKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRADNKAMLV------LMD 58

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-----STANLKTACFRVPCG---- 122
             A +D     +  + W        DL+S +D  PL     S  NL T            
Sbjct: 59  SEAKLDRYVSDVPDIAW--------DLISVSD-KPLTIIYSSAKNLATNLLGADGSVGIR 109

Query: 123 -----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
                F+KKL E +  PL   SAN SG+ S  N   +  S + KE
Sbjct: 110 ITNEEFSKKLCERFRKPLVSTSANVSGEPSPANFSEV--SEVIKE 152


>gi|253690146|ref|YP_003019336.1| SUA5/yciO/yrdC domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756724|gb|ACT14800.1| SUA5/yciO/yrdC domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 189

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D S +  +     LS    
Sbjct: 22  IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLAPYIDDSVLSDEQK 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPGP+T VL    TT      T    +   RV      K+L + YG PL   SA
Sbjct: 82  AMMFSTWPGPVTWVLPAKRTT--PQWLTGQFSSLAVRVSDHPLVKELCQRYGKPLVSTSA 139

Query: 141 NRSGQISITNVKHILSSSICKEIPLI 166
           N SGQ      + + S     + P++
Sbjct: 140 NLSGQPPCRTAQEV-SQQFGDDFPVL 164


>gi|260577562|ref|ZP_05845501.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258604286|gb|EEW17524.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 219

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 13/193 (6%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  + +PT+TVYG+  D+ +  A+  L   K R    P+   V   + ++    V   +
Sbjct: 26  GGRLVVLPTDTVYGIGCDAFDNEAVAALLRAKGRGPDMPVPVLVPSWTTIQ--GLVREYT 83

Query: 81  LHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPL 135
            ++ KL   FWPG L++V+    +    P +  + + T   R+P      +L+E  G P+
Sbjct: 84  YNMRKLVEAFWPGGLSMVVHQAPSL---PWNLGDTRGTVMLRMPNQPIALELLERTG-PM 139

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A+ SAN SGQ   TNV+ +    +  ++   IDGG +  G+ STIV++   +  RILR G
Sbjct: 140 AVSSANISGQPPATNVQ-MAEDQLGADVTTYIDGGEAHHGVASTIVDLSSGRP-RILREG 197

Query: 196 GLEIETLKRAISV 208
               E +   + +
Sbjct: 198 AATTERVAEVLGM 210


>gi|227542626|ref|ZP_03972675.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181824|gb|EEI62796.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 189

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 15/190 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           ++AG  + IPT+TVYG+  ++ NP A+ +L + K R    P+   V     V+  +    
Sbjct: 1   MEAGRLVVIPTDTVYGIGCNAFNPEAVNKLLQAKHRGPDMPVPVLVGSWDTVRGLSRDYT 60

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-FTKKLIETYG 132
             ++ L + FWPG L++V+         P  T NL     +   R+P      +L++  G
Sbjct: 61  RQMNVLIEAFWPGGLSIVVPQ------APSLTWNLGDTNGSVMLRMPLQKLAIELLQKTG 114

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A+ SAN SGQ    N +      +   + + ++GG ++IG  STI+++  +    IL
Sbjct: 115 -PMAVSSANISGQPPALNAREA-EEQLGNSVSVYLEGGQAEIGTPSTIIDL-TQATPTIL 171

Query: 193 RPGGLEIETL 202
           R G +  E +
Sbjct: 172 REGAIPSEKI 181


>gi|150008371|ref|YP_001303114.1| putative translation factor [Parabacteroides distasonis ATCC 8503]
 gi|255015619|ref|ZP_05287745.1| putative translation factor [Bacteroides sp. 2_1_7]
 gi|256839339|ref|ZP_05544848.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375013|ref|ZP_06984970.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19]
 gi|149936795|gb|ABR43492.1| conserved hypothetical protein, putative translation factor
           [Parabacteroides distasonis ATCC 8503]
 gi|256738269|gb|EEU51594.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267513|gb|EFI09169.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19]
          Length = 186

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 31/165 (18%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KACE + AG  I  PT+T++G+  D+ N  A++R+YE+K+R     ++       ++ 
Sbjct: 5   IKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLV------LMD 58

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-----STANLKTACFRVPCG---- 122
             A +D     +  + W        DL+S +D  PL     S  NL T            
Sbjct: 59  SEAKLDRYVSDVPDIAW--------DLISVSD-KPLTIIYSSAKNLATNLLGADGSVGIR 109

Query: 123 -----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
                F+KKL E +  PL   SAN SG+ S  N   +  S + KE
Sbjct: 110 ITNEEFSKKLCERFRKPLVSTSANVSGEPSPANFSEV--SEVIKE 152


>gi|297157197|gb|ADI06909.1| hypothetical protein SBI_03788 [Streptomyces bingchenggensis BCW-1]
          Length = 215

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 95/208 (45%), Gaps = 25/208 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+TVYG+  D+ N  A+  L E K R    P    V   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFNAEAVGDLLEAKGRGRNMPTPVLVGSPNT 74

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG 122
           +  H  V  LS     L   FWPG LTLV          P  T +L     T   R+P  
Sbjct: 75  L--HGLVTDLSEQAWELVDAFWPGALTLV------ARHQPSLTWDLGETHGTVAVRMPLH 126

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLES 178
               +L+  +G P+A+ SAN +G  S  +    + +L  S+     + +DGG +   + S
Sbjct: 127 PVAIELLNDFG-PMAVSSANLTGHPSPQDCDAAQDMLGDSVS----VYLDGGPTPAAVPS 181

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206
           +IV+V  +  V +LR G L  E L+  +
Sbjct: 182 SIVDVTSKVPV-LLRAGALSAEQLREVV 208


>gi|213963761|ref|ZP_03392011.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sputigena Capno]
 gi|213953641|gb|EEB64973.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sputigena Capno]
          Length = 185

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 13/135 (9%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  I  PT+TV+GL  D+ NP A+ ++++IK+R     LI  VSDI M++++ + 
Sbjct: 9   EILKEGKIILYPTDTVWGLGCDATNPEAVAKIFQIKQRSESKSLIILVSDIQMLQQYVTA 68

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS------TANLKTACFRVPCGFTKKLIET 130
            P  +         P T++         HPL        A+   A   V   F +++I  
Sbjct: 69  VPSKVLAYLQTLQEPTTIIYS-------HPLHLAKNVIAADDTVAIRVVQDAFCQQMIAD 121

Query: 131 YGHPLAIPSANRSGQ 145
           +G P+   SAN SG+
Sbjct: 122 FGKPIVSTSANISGE 136


>gi|239917334|ref|YP_002956892.1| translation factor SUA5 [Micrococcus luteus NCTC 2665]
 gi|281414186|ref|ZP_06245928.1| translation factor SUA5 [Micrococcus luteus NCTC 2665]
 gi|239838541|gb|ACS30338.1| translation factor SUA5 [Micrococcus luteus NCTC 2665]
          Length = 244

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 17/204 (8%)

Query: 10  NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           NA+ +A E L D G  + +PT+TVYG+  D+ +P A+  L   K R    P    ++D  
Sbjct: 18  NAVARAREVLADRGC-VVLPTDTVYGIGADAFSPLAVAVLLAAKGRGRTMPPPVLIADRR 76

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVP-CG 122
           ++   A   P     LA+ FWPG LTL+L         P  T +L     T   RVP   
Sbjct: 77  VMAGLAYDVPEEAEALAERFWPGALTLIL------KSQPTLTWDLGETRGTVALRVPDDA 130

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++L+   G P+A+ SANR+G +          S + + + L +D G  +    STIV+
Sbjct: 131 VARELLYAVG-PMAVSSANRTG-MDAATTADAARSMLGESVALYLDAGPRESRDPSTIVD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
                  R+ R G + +E L+  +
Sbjct: 189 CTV-TPFRVARQGSVPLEELRAVV 211


>gi|281358353|ref|ZP_06244835.1| Sua5/YciO/YrdC/YwlC family protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315180|gb|EFA99211.1| Sua5/YciO/YrdC/YwlC family protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 193

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 16/177 (9%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80
           G  + +PTETVYGL   + +  A+ ++Y++K R     L   V D   + ++   ++ L 
Sbjct: 26  GAVLLLPTETVYGLVCRADDAAAVAKIYDLKDRDRSKLLGWFVGDWRKLAEYGVELEGLP 85

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPS 139
             LA+ + PGP+T++                  T  FRVP      ++++  G PLA  S
Sbjct: 86  SELAEKYCPGPITII-----------ARKKAGGTLGFRVPDYPLILEILKLAGVPLAQTS 134

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRILRPG 195
           AN SG  +  +VK  L + +  ++ L +DGG I      ST+V+      VR+LRPG
Sbjct: 135 ANHSGHPNALSVKAAL-AELSGDVELAVDGGDIPPDAQGSTVVDATG-NAVRVLRPG 189


>gi|91791398|ref|YP_561049.1| SUA5/yciO/yrdC-like protein [Shewanella denitrificans OS217]
 gi|123357281|sp|Q12TA0|RIMN_SHEDO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|91713400|gb|ABE53326.1| translation factor SUA5 [Shewanella denitrificans OS217]
          Length = 188

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 7/162 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81
           IA PTE VYGL  D  N  AI +L  +K+RP    LI   S    +  +  V  L+   L
Sbjct: 19  IAYPTEAVYGLGCDPDNDQAIEKLLAVKQRPWQKGLILVASSFEQLLPYVDVAQLTQAQL 78

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             A   WPGP T V+ + S   +         +   RV      ++L ++   PL   SA
Sbjct: 79  DFAHSKWPGPFTFVMPVKS--HVSNKLRGEFDSIAVRVSAHPIVRELCDSLNKPLVSTSA 136

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           N +GQ  +   + IL +    +I  ++ G + +    STI++
Sbjct: 137 NLAGQDPVLTSRQIL-TDFADKIDALVLGDLGQQAQPSTIID 177


>gi|21244532|ref|NP_644114.1| hypothetical protein XAC3808 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|81798965|sp|Q8PG13|RIMN_XANAC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|21110204|gb|AAM38650.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 187

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 9/190 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  L +A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S
Sbjct: 1   MTDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVAS 60

Query: 66  DISMVKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121
            + +++    +D L     +     WPGP T +L +   TD  P   T        R+  
Sbjct: 61  SVDVLRDWVDIDALEPARRRDVLTSWPGPHTWILPI---TDRAPRWVTGEHDGLAVRISA 117

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +G PL   SAN +G+    + +  L  ++   I  ++DG    +   + I
Sbjct: 118 HPVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQI 176

Query: 181 VNVQCEKKVR 190
            + +  + +R
Sbjct: 177 RDARSGQILR 186


>gi|183984067|ref|YP_001852358.1| hypothetical protein MMAR_4096 [Mycobacterium marinum M]
 gi|183177393|gb|ACC42503.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 216

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 8/203 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           SN +  A   L AG  + +PT+TVYG+  D+ +  A+  L   K R    P+   V    
Sbjct: 14  SNGIASAAGALKAGRLVVMPTDTVYGIGADAFDSAAVNALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++      P     L + FWPG L+LV+ + + +    L  A+  T   R+P      +
Sbjct: 74  TIEGLVFSMPAGARELIRAFWPGALSLVV-VQAPSLQWDLGNAH-GTVMLRMPLHPVAIE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A+ SAN SGQ    +V     +     + + +DGG +     STIV++   
Sbjct: 132 LLRQVG-PMAVSSANVSGQPPAVDVADA-RNQFGDLVDVYLDGGPAAQQAASTIVDLTGA 189

Query: 187 KKVRILRPGGLEIETLKRAISVE 209
              RILRPG +  E +   + V+
Sbjct: 190 P--RILRPGPVSAERIADVLGVD 210


>gi|72383532|ref|YP_292887.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           NATL2A]
 gi|72003382|gb|AAZ59184.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           NATL2A]
          Length = 191

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 86/178 (48%), Gaps = 13/178 (7%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH--VSDISMVKKHASVDPLSLHLA 84
            PT+T+  L      P   ++++ IKKRP+  PLI     SD      H      SL LA
Sbjct: 23  FPTDTLPALC---SYPKYSKKIWTIKKRPSSKPLILMGGCSDDLFEFVHPCALEESLQLA 79

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
           K++WPG LT+VL  +   +      AN     FRVP     + +     PLA  SAN SG
Sbjct: 80  KIYWPGALTMVLPTIG--NFSKYLNANSNAVGFRVPALRIARDLLMQTGPLATTSANISG 137

Query: 145 QISITNVKHILSSSI-CKEIPLIID-GGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           +   T VK  + +SI   EIP++      S  G+ ST+V  +   K  +LRPG + ++
Sbjct: 138 E---TPVKDAMEASIQFPEIPILAPIPWPSSSGMASTVVEWK-NGKWNLLRPGSVVLK 191


>gi|118619167|ref|YP_907499.1| hypothetical protein MUL_3963 [Mycobacterium ulcerans Agy99]
 gi|118571277|gb|ABL06028.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 216

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 8/203 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           SN +  A   L AG  + +PT+TVYG+  D+ +  A+  L   K R    P+   V    
Sbjct: 14  SNGIASAAGALKAGRLVVMPTDTVYGIGADAFDSAAVNALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++      P     L + FWPG L+LV+ + + +    L  A+  T   R+P      +
Sbjct: 74  TIEGLVFSMPAGARELIRAFWPGALSLVV-VQAPSLQWDLGNAH-GTVMLRMPLHPVAIE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A+ SAN SGQ    +V     +     + + +DGG +     STIV++   
Sbjct: 132 LLRQVG-PMAVSSANVSGQPPAVDVADA-RNQFGDLVDVYLDGGPAAQQAASTIVDLTGA 189

Query: 187 KKVRILRPGGLEIETLKRAISVE 209
              RILRPG +  E +   + V+
Sbjct: 190 P--RILRPGPVSAERIADVLGVD 210


>gi|289191931|ref|YP_003457872.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938381|gb|ADC69136.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp.
           FS406-22]
          Length = 216

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 8   DSNALRKACEFLDA----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           D N  +K  +FL      G  I   T+T+YG++ ++ +  A++++YEIK+R    PL   
Sbjct: 14  DENERKKVLDFLKEEILNGKIIICGTDTLYGISANALDEKAVKKVYEIKRRDFSKPLSIC 73

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D S ++K+A V+ L+  +   F PG LT++   L    + P   A       R+P   
Sbjct: 74  VKDKSEIEKYAYVNDLAKKIIDKFLPGALTII---LKKKPVIPDIVAK-DYVGIRIP--- 126

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            + +I E    PL   SAN SG+ S T+V  I    I K +  ++D G  K    ST
Sbjct: 127 DEPIIRELSIVPLTTTSANISGKESPTSVNEI-DEEILKNVDYVVDIGKCKYSKPST 182


>gi|117619223|ref|YP_854792.1| Sua5/YciO/YrdC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|212277665|sp|A0KEX6|RIMN_AERHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|117560630|gb|ABK37578.1| Sua5/YciO/YrdC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 186

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 16/177 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           IA  TE V+GL  D  + +A+ RL  IK+RP    LI   +D++ ++ +  +D L S  L
Sbjct: 18  IAYATEAVFGLGCDPDSESAVHRLLAIKQRPVEKGLILIAADLAQLQDYIDLDQLTSEQL 77

Query: 84  AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A++   WPGP T ++   S T      T    T   RV      + L   +G PL   SA
Sbjct: 78  ARVEASWPGPFTWIMPARSNTPA--WLTGQFTTLAVRVTAHPQVQALCRAFGKPLVSTSA 135

Query: 141 NRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           N +G+     + ++  +L+S +   +P        ++G ++    ++  +   I+RP
Sbjct: 136 NLTGEEPARRVADIGELLASQLAYILP-------GEVGGQANPSEIKDARTGAIIRP 185


>gi|224098296|ref|XP_002195429.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 680

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ LR   E L+ G    +PT+TVY LA   ++P AI ++Y IK RP   P+   +S++ 
Sbjct: 468 TSGLRTIAELLNTGAVCGVPTDTVYALAASCKHPQAIEKVYRIKDRPQEKPICIFISNLE 527

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLST--ANLKTACFRVP-C 121
            ++  A  + PL     +  +PG +  ++   + L    +    +      +   RVP  
Sbjct: 528 QLRAAAPPISPLLWEFMENVYPGGIGCIIQKGEWLKKLGVGAGYSRVGTQDSIMIRVPDL 587

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI+  G PLAI SAN SG++  T+   ++S    K   ++ DG   ++ + ST+V
Sbjct: 588 TVLVHLIDMTG-PLAITSANPSGEVDSTHHDMVISRLGHKLEGVLCDGESDEV-VASTVV 645

Query: 182 NVQ--CEKKVRILRPG 195
           N     E  + I+R G
Sbjct: 646 NCTKIDESGITIVREG 661


>gi|256838758|ref|ZP_05544268.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262382729|ref|ZP_06075866.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B]
 gi|301307849|ref|ZP_07213805.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3]
 gi|256739677|gb|EEU53001.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262295607|gb|EEY83538.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B]
 gi|300834192|gb|EFK64806.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3]
          Length = 200

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 18/200 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LI 61
           +   + K  + L  G  +  PT+TVY +  D+ N  A+ ++ ++K    +NP      +I
Sbjct: 11  NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMK---GVNPQKSNLSII 67

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
           C+  D+S + ++A V   +  L K   PGP T +   L T+   P    N K    RVP 
Sbjct: 68  CY--DLSNLSEYAKVSNAAFKLMKKHLPGPFTFI---LPTSSELPKIYKNRKEVGIRVPD 122

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              T+ L+++ G+P+   S     + I  T    ++      ++ ++IDGG    GLE++
Sbjct: 123 NNITRTLVQSLGNPILTMSIRDEDEVIEYTTDPELIHEKYEHQVDIVIDGGFG--GLEAS 180

Query: 180 IVNVQCEKKVRILRPGGLEI 199
            V         I+R G  E+
Sbjct: 181 TVIDCTTDNFEIVRQGKGEL 200


>gi|255324518|ref|ZP_05365635.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255298424|gb|EET77724.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 222

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 9/200 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH- 73
           A +   +G  + +PT+T+YGL  D+ +  A+  L   K+R    P+   V     V+   
Sbjct: 21  AVKAAQSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLVGSWDTVRGLV 80

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETY 131
           AS    +  L + FWPG L++V+    +    P +  + + T   R+P      +L+   
Sbjct: 81  ASYTDTARDLVEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREV 137

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A+ SAN SG    T    +    + K + + +DGG + +G  STI+++  E+   +
Sbjct: 138 G-PMAVSSANISGHQPPTTA-LMAKQQLGKAVTVYLDGGETAVGKPSTIIDLSGERPY-L 194

Query: 192 LRPGGLEIETLKRAISVELE 211
           LR G L  E +   I V+ +
Sbjct: 195 LREGALSAEEIGEVIGVDAQ 214


>gi|298374321|ref|ZP_06984279.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19]
 gi|298268689|gb|EFI10344.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19]
          Length = 200

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 18/200 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LI 61
           +   + K  + L  G  +  PT+TVY +  D+ N  A+ ++ ++K    +NP      +I
Sbjct: 11  NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMK---GVNPQKSNLSII 67

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
           C+  D+S + ++A V   +  L K   PGP T +   L T+   P    N K    RVP 
Sbjct: 68  CY--DLSNLSEYAKVSNAAFKLMKKHLPGPFTFI---LPTSSELPKIYKNRKEVGIRVPD 122

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              T+ L+++ G+P+   S     + I  T    ++      ++ ++IDGG    GLE++
Sbjct: 123 NNITRTLVQSLGNPILTMSIRDEDEVIEYTTDPELIHEKYEHQVDIVIDGGFG--GLEAS 180

Query: 180 IVNVQCEKKVRILRPGGLEI 199
            V         I+R G  E+
Sbjct: 181 TVIDCTTDNFEIVRQGKGEL 200


>gi|116749551|ref|YP_846238.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698615|gb|ABK17803.1| translation factor SUA5 [Syntrophobacter fumaroxidans MPOB]
          Length = 204

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++K  E L  G  IA PT+T YG+  D  N  +I R+Y +K+R    P     +D+  + 
Sbjct: 15  IQKIVEVLANGGIIAYPTDTYYGIGCDLFNKASIERIYLMKRRSPQQPFSFICNDLKNIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++A V   +    K   PGP T VL+   +  +  +     +T   RVP       +++ 
Sbjct: 75  EYAQVTNYAYKTMKRLLPGPYTFVLE--GSRLVPKIMLTKRQTVGIRVPDNPICLAIVQE 132

Query: 131 YGHPLAIPSAN--RSGQI--SITNVKHILSSSICKEIPLIIDGG 170
            GHP+   SA    + QI  S   +K IL  +    + LI+DGG
Sbjct: 133 LGHPIISTSATNPETNQILASPQEIKEILGHT----LDLIVDGG 172


>gi|330831504|ref|YP_004394456.1| putative ribosome maturation factor rimN [Aeromonas veronii B565]
 gi|328806640|gb|AEB51839.1| Putative ribosome maturation factor rimN [Aeromonas veronii B565]
          Length = 186

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 10/189 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N   +A   L     IA  TE V+GL  D  +  A++RL  IK+RP    LI   +D+  
Sbjct: 3   NEFEQAVAALQQEGVIAYATEAVFGLGCDPDSEVAVQRLLAIKQRPVEKGLILIAADVEQ 62

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +  +  LS   L   +  WPGP T ++   +TT      T   +T   RV      +
Sbjct: 63  LQDYIDLSQLSGEQLARVEASWPGPFTWIMPARATTPA--WLTGQFETLAVRVTAHPQVQ 120

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L   +G PL   SAN +G+     V  I    +  ++  I+ G   ++G ++    ++ 
Sbjct: 121 ALCRAFGKPLVSTSANLTGEEPARRVADI-GERLASKLAYILPG---EVGGQANPSEIKD 176

Query: 186 EKKVRILRP 194
            +   I+RP
Sbjct: 177 ARTGAIIRP 185


>gi|294625227|ref|ZP_06703867.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600455|gb|EFF44552.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 187

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 9/190 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  L +A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S
Sbjct: 1   MTDTVDLGRAVAALTQGGVIAYPTEAVWGLGCDPRQQAAVMRLLEIKRRPVEKGVIVVAS 60

Query: 66  DISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121
           ++ +++    +   +P         WPGP T +L +   TD  P   T        R+  
Sbjct: 61  NVDVLRDWVDIEALEPARRQDVLTSWPGPHTWILPI---TDRAPRWVTGEHDGLAVRISA 117

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +G PL   SAN +G+    + +  L  ++   I  ++DG    +   + I
Sbjct: 118 HPVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQI 176

Query: 181 VNVQCEKKVR 190
            + +  + +R
Sbjct: 177 RDARSGQILR 186


>gi|323443843|gb|EGB01455.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O46]
          Length = 213

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 31/210 (14%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +    D  +   + +
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            + +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I     P+
Sbjct: 78  TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYIKSPI 134

Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           AI SAN SG    I IT          NV+++L S              +     STI+ 
Sbjct: 135 AITSANISGTADDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212
           V  + K+ +LR G ++ E +K  +   + Y
Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212


>gi|226307402|ref|YP_002767362.1| hypothetical protein RER_39150 [Rhodococcus erythropolis PR4]
 gi|229490001|ref|ZP_04383854.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121]
 gi|226186519|dbj|BAH34623.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
 gi|229323102|gb|EEN88870.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121]
          Length = 220

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 7/196 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+T+YGLA D+ +  A+  L   K R    P+   V   + +     SV P +  L
Sbjct: 30  VVLPTDTLYGLAADAFDSEAVTSLLRAKGRGRDMPVPVLVGSWNTIDGLVYSVRPQARDL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L+LV++   +       T    T   R+P      +L+   G PLA+ SAN 
Sbjct: 90  IRAFWPGGLSLVVEQAPSLAWDLGDTRG--TVMLRMPLHPVALELLRDVG-PLAVSSANI 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+   T V+      +     + +DGG ++  + STIV++      RILR G +  E++
Sbjct: 147 SGRPPATTVEEA-RDQLGGSASVYLDGGKAEHAVASTIVDLTGNSP-RILRVGAVSAESI 204

Query: 203 KRAISVELEYCVDETS 218
              +    E  V+  S
Sbjct: 205 AEVLGTSPESLVEGVS 220


>gi|220913095|ref|YP_002488404.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus
           A6]
 gi|219859973|gb|ACL40315.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus
           A6]
          Length = 266

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 27/196 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKR----------PAMNPLICHVSDISMVKKHA 74
           + +PT+TVYG+A D+ +P A+  L   K R          P +N L    +DIS   +  
Sbjct: 30  VVLPTDTVYGIAADAFSPQAVTMLLVSKGRSRTMPPPVLIPRINALDGLATDISAEAR-- 87

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
                   LA+ FWPG LTL+     + D     T    T   R+P     + + T   P
Sbjct: 88  -------KLAEAFWPGGLTLIFHAQPSLDWDLGETKG--TVALRMPADEIAQELLTLTGP 138

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVR 190
           LA+ SANR+G              +   + + ++GG         + STIV+     ++R
Sbjct: 139 LAVSSANRTGHAPAQTAA-AAREQLADSVEVYLEGGFRPAEGADAVPSTIVDATG-PRLR 196

Query: 191 ILRPGGLEIETLKRAI 206
           ++R G + ++ L+  +
Sbjct: 197 VVRNGAVSLDQLREHV 212


>gi|120596862|ref|YP_961436.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella sp. W3-18-1]
 gi|146291140|ref|YP_001181564.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens CN-32]
 gi|212288225|sp|A4Y1D2|RIMN_SHEPC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288228|sp|A1RDY7|RIMN_SHESW RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|120556955|gb|ABM22882.1| translation factor SUA5 [Shewanella sp. W3-18-1]
 gi|145562830|gb|ABP73765.1| translation factor SUA5 [Shewanella putrefaciens CN-32]
          Length = 188

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 79/181 (43%), Gaps = 11/181 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G+ IA PTE VYGL  D  N TAI++L  +K+RP    LI   SD   +  +     
Sbjct: 14  LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQ 72

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           L+   L  A   WPGP T V+ +     +         +   RV      + L      P
Sbjct: 73  LTAEQLEFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKP 130

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L   SAN +G+        IL+    K I  ++ G + +    STI++ +  K   ILR 
Sbjct: 131 LVSTSANLAGEDPALTAAEILADFTGK-IDALVLGELGEQRQPSTIIDARSGK---ILRN 186

Query: 195 G 195
           G
Sbjct: 187 G 187


>gi|319424446|gb|ADV52520.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens 200]
          Length = 188

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 79/181 (43%), Gaps = 11/181 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G+ IA PTE VYGL  D  N TAI++L  +K+RP    LI   SD   +  +     
Sbjct: 14  LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQ 72

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           L+   L  A   WPGP T V+ +     +         +   RV      + L      P
Sbjct: 73  LTAEQLEFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKP 130

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L   SAN +G+        IL+    K I  ++ G + +    STI++ +  K   ILR 
Sbjct: 131 LVSTSANLAGEDPALTAAEILADFTGK-IDALVLGELGEQHQPSTIIDARSGK---ILRN 186

Query: 195 G 195
           G
Sbjct: 187 G 187


>gi|300858258|ref|YP_003783241.1| hypothetical protein cpfrc_00840 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685712|gb|ADK28634.1| hypothetical protein cpfrc_00840 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205979|gb|ADL10321.1| Putative translation factor SUA5 [Corynebacterium
           pseudotuberculosis C231]
 gi|302330532|gb|ADL20726.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276214|gb|ADO26113.1| Putative translation factor SUA5 [Corynebacterium
           pseudotuberculosis I19]
          Length = 216

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 9/204 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMN-PLICHVSDIS 68
           AL+ A + +  G  + +PT+T+YG+  D+ +  A+ +L   K+R P M  P++    D +
Sbjct: 16  ALKVASDAVKDGRLVVMPTDTLYGIGCDAFDNNAVAKLLTTKQRGPDMPVPVLVGSWDTA 75

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               H+  + +   L + FWPG L++V+    +   +   T    T   R+P      +L
Sbjct: 76  RGLVHSYSEQMR-TLIEAFWPGALSIVVAQAPSLQWNLGDTRG--TVMLRMPLHPVAIEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+A+ SAN SGQ   T         +   +   +DGG + +G  STI+++    
Sbjct: 133 LRETG-PMAVSSANVSGQKPATTALAA-QEQLGDAVSAYLDGGATPVGTASTIIDLSGPS 190

Query: 188 KVRILRPGGLEIETLKRAISVELE 211
             RILR G +  E +   + +++E
Sbjct: 191 P-RILREGAISAERIAEVLDLDVE 213


>gi|283780357|ref|YP_003371112.1| Protein-tyrosine phosphatase, low molecular weight [Pirellula
           staleyi DSM 6068]
 gi|283438810|gb|ADB17252.1| Protein-tyrosine phosphatase, low molecular weight [Pirellula
           staleyi DSM 6068]
          Length = 389

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 27/261 (10%)

Query: 2   QIMSITDSNALR----KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q++ + +S+  R    +A + L  G  +A PTETVY  A  + NP A+ RL E++   A 
Sbjct: 4   QVIDVQNSDDPRDVVHRAVQALVEGRVVAFPTETVYVAAASALNPAAVGRLLELRGGSAD 63

Query: 58  NPL-ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN----- 111
            PL I   S    +    ++  L + LA+  WPGP+TL L      D HP S        
Sbjct: 64  IPLSIALRSTDDALDYVPTIPSLGMRLARRCWPGPMTLEL-----ADAHPDSVVQRLPPS 118

Query: 112 -------LKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163
                  L     RVP      ++++    PL I +A  +G      V+ ++  +    +
Sbjct: 119 VKKVISPLGNVRLRVPAHALLSEVLKLLAGPLVITAARPAGASDPITVEDVVQKA-ANHV 177

Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDET-STPQ 221
            L+++ G  + G  +++V V     + ILRPG +    L+R  S + +  C   T  +P 
Sbjct: 178 DLVLNHGRCRFGQRASVVRV-LNSSLEILRPGVISEANLRRLSSWMAVMVCTGNTCRSPM 236

Query: 222 SPGMLKSHYAPRSQVRLRAIH 242
           +  +LK   A   QV + A+ 
Sbjct: 237 AEALLKKRLADHLQVPIDALE 257


>gi|282857672|ref|ZP_06266885.1| SUA5 protein [Pyramidobacter piscolens W5455]
 gi|282584496|gb|EFB89851.1| SUA5 protein [Pyramidobacter piscolens W5455]
          Length = 175

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%)

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           NRSG+ S TN + + +  I     +I+D G  ++G+EST+++V     V +LRPGG+ +E
Sbjct: 1   NRSGRPSPTNAQTV-AEDIGSAAAMILDAGECRVGVESTVLDVSAAVPV-LLRPGGVSME 58

Query: 201 TLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI---RFGNVP 256
            L+  +  V L   V+E    +SPG    HYAP  +VR+      P  A     RF  + 
Sbjct: 59  ELREFLGEVALPVGVNELK--RSPGTRYRHYAPAVEVRV----WEPGAAFAWPERFTYMG 112

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
           +   E  + +  +   G  +  A  LF+ ++  +  G   +A    P+ G+G A+ +R+ 
Sbjct: 113 VAASEK-LPARQIHFDG-FEAYAHGLFSALRELEKDGLPIVA-QWPPSGGIGRALRDRIS 169

Query: 317 RAAA 320
           RAA 
Sbjct: 170 RAAG 173


>gi|90413785|ref|ZP_01221773.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum
           3TCK]
 gi|90325254|gb|EAS41751.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum
           3TCK]
          Length = 192

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 6/141 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + L++    L +G  IA PTE V+G+  D  +  AI +L  +K+RP    LI   ++ 
Sbjct: 7   DMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDHSQAIEKLLALKQRPIEKGLILIAANY 66

Query: 68  SMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             ++ +     LS L   K+F  WPGP+T V+ +     + PL T    +   RV     
Sbjct: 67  QQLQPYIDDTQLSDLQKQKIFSTWPGPVTWVMPV--KKGVSPLLTGKFTSIAVRVSDHPL 124

Query: 124 TKKLIETYGHPLAIPSANRSG 144
            +KL   +G P+   SAN +G
Sbjct: 125 VQKLCHQFGKPITSTSANLTG 145


>gi|225620696|ref|YP_002721954.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira hyodysenteriae WA1]
 gi|225215516|gb|ACN84250.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira hyodysenteriae WA1]
          Length = 198

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D G+ ++ PT+TVYG+  D+ N  A+ R+Y IK R    PL+    D+  VKK +  D  
Sbjct: 26  DGGIVVS-PTDTVYGMLADAFNTDAVNRIYTIKDREKNKPLLILSKDLESVKKFS--DKE 82

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
              + K   PG LT ++ LL   ++    +    T   R+P     ++I    +PL  PS
Sbjct: 83  VPDIIKNNIPGELTFIVPLLE--ELKNKFSYLKDTVALRIPNDKYMQIILKGTNPLVAPS 140

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG   I +    L+     +  LI++ G+ +  + ST+ +    K   +LR G + +
Sbjct: 141 ANPSGYGVILDGNE-LAELYKDKADLIVNAGVLENKMPSTLYDCLANK---VLRQGSVHL 196

Query: 200 E 200
           +
Sbjct: 197 D 197


>gi|163840180|ref|YP_001624585.1| Sua5/YciO/YrdC/YwlC family protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162953656|gb|ABY23171.1| Sua5/YciO/YrdC/YwlC family protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 265

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 23/200 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLH- 82
           I +PT+TVYG+A D+ +P A+  L   K R  +M P +       ++++  ++D L++  
Sbjct: 31  IVMPTDTVYGIAADAFSPVAVATLLAAKGRGRSMPPPV-------LIQRVQTMDGLAVDI 83

Query: 83  ------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
                 LA+ FWPG LTL+     + D       +  T   R+P       + T   PLA
Sbjct: 84  SEEARKLAEAFWPGGLTLIFHAQPSLDWD--LGDSFGTVALRMPDDKLVLDLLTLTGPLA 141

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLE---STIVNVQCEKKVRIL 192
           + SANR+GQ +   V       + + + + +  G   + G E   STIV+   + ++R++
Sbjct: 142 VSSANRTGQPTARTVAQA-REQLGEVVEVYLGEGERPLDGAEVQPSTIVDATGD-RLRVV 199

Query: 193 RPGGLEIETLKRAISVELEY 212
           RPG + I+ L+  +   L++
Sbjct: 200 RPGVITIDQLRGVVPSVLDF 219


>gi|291298831|ref|YP_003510109.1| Sua5/YciO/YrdC/YwlC family protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568051|gb|ADD41016.1| Sua5/YciO/YrdC/YwlC family protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 217

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 13/201 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDI 67
            +A++ A   +++G  + +PT+TVYGL  D+    A+  L   KKR   M P +   S  
Sbjct: 13  DSAIKAAVSAVESGDLVVMPTDTVYGLGADAFKSYAVDALLRTKKRGRDMVPPVLVGSRK 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           ++     SV  +   L   FWPGPLT+V+   S T    L   +  T   R+P       
Sbjct: 73  ALDGLTISVPSMIKDLVAAFWPGPLTVVMH-YSPTLAWDLGDDD-GTVAVRMPLHPVALE 130

Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +     P+A+ SAN++GQ    + T+ K  L  ++     + ++ G S     STIV+  
Sbjct: 131 VLAETGPMAVSSANKTGQPPAATATDAKEQLGYAVQ----VYLEAGPSPDTKPSTIVD-- 184

Query: 185 CEKKV-RILRPGGLEIETLKR 204
           C   V ++LR G L +E L+ 
Sbjct: 185 CTGDVPKVLRQGALSLERLRE 205


>gi|227503860|ref|ZP_03933909.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC
           6940]
 gi|227199483|gb|EEI79531.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC
           6940]
          Length = 222

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 9/190 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83
           + +PT+T+YGL  D+ +  A+  L   K R    P+   V     ++   AS    +  L
Sbjct: 31  VVMPTDTLYGLGCDAFDNDAVASLLATKHRGPDMPVPVLVGSWDTIRGLVASYTDTARTL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141
            + FWPG L++V+    +    P +  + + T   R+P      +L+   G P+A+ SAN
Sbjct: 91  VEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSAN 146

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SGQ   T         + K + + +DGG + IG  STI+++  E+   +LR G L  E 
Sbjct: 147 ISGQTPPTTALEA-KQQLGKAVTVYLDGGETAIGKPSTIIDLSGERPY-LLREGALSAEE 204

Query: 202 LKRAISVELE 211
           +   I V  E
Sbjct: 205 IAAVIGVTAE 214


>gi|313157954|gb|EFR57360.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5]
          Length = 200

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 7/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LRK  + L+ G  I  PT++VY      R+P AI RL  +K + A         +++   
Sbjct: 15  LRKVVDALEDGGIIIYPTDSVYAFGCSLRSPKAIERLRRMKGKDA-EAFTVVFENLAQAA 73

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ET 130
           ++  VD  + H+ K   PGP T V  L +++ +   +    +T   R+P     ++I   
Sbjct: 74  EYCRVDNAAFHILKRNLPGPFTFV--LTASSGMPDKALEKRRTIGIRIPGNAVPRVIVAA 131

Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            G PL   S     + +  T    ++     +++ L+IDGG+    + +T+V++  ++  
Sbjct: 132 LGCPLITTSVKDDDEVVEYTTDPELIHERYGRDVALVIDGGVGD-NVPTTVVDLTGDEP- 189

Query: 190 RILRPGGLEIE 200
            ILR G  E++
Sbjct: 190 EILREGKGELQ 200


>gi|261250597|ref|ZP_05943172.1| YrdC family protein [Vibrio orientalis CIP 102891]
 gi|260939166|gb|EEX95153.1| YrdC family protein [Vibrio orientalis CIP 102891]
          Length = 185

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
             +A   L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   ++   + 
Sbjct: 4   FERALSALKQGEVIAYPTEGVFGVGCDPDNPNAIKKLLELKQRPVEKGLILIAANYQQLL 63

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +     LS   L   +  WPGP+T ++   S+  +    +    +   RV      +K+
Sbjct: 64  PYIDQQALSAEQLERVQQTWPGPVTWIMP--SSDKVSNWVSGQYDSIAVRVTDHPLVQKM 121

Query: 128 IETYGHPLAIPSANRSGQ 145
              +G PL   SAN +G+
Sbjct: 122 CNAFGKPLTSTSANLTGE 139


>gi|134102725|ref|YP_001108386.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338]
 gi|291007818|ref|ZP_06565791.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338]
 gi|133915348|emb|CAM05461.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338]
          Length = 216

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 27/199 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D+ +  A+  L   K R    P+   V   S V     SV   +  L
Sbjct: 30  VVLPTDTVYGIGADAFDSNAVASLLAAKGRGPDMPVPVLVGSWSTVDGLVMSVPQQARAL 89

Query: 84  AKLFWPGPLTLVL--------DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            + FWPG L++VL        DL +T       T NL+     V     +++      P+
Sbjct: 90  IEAFWPGGLSIVLPQAPSLSWDLGNTR-----GTVNLRMPLHPVALDLLREV-----GPM 139

Query: 136 AIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
           A+ SANR+G     + T  +  L  S+     + +DGG S   + STIV++  + + R+L
Sbjct: 140 AVSSANRTGHPPASTATEAREQLGDSVS----VYLDGGPSGEPVASTIVDL-TQAQPRVL 194

Query: 193 RPGGLEIETLKRAISVELE 211
           R G + ++ L   + V+ E
Sbjct: 195 REGAVGLDDLADVLGVDAE 213


>gi|225851215|ref|YP_002731449.1| Sua5/YciO/YrdC/YwlC family protein [Persephonella marina EX-H1]
 gi|225646672|gb|ACO04858.1| Sua5/YciO/YrdC/YwlC family protein [Persephonella marina EX-H1]
          Length = 203

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  I  S  + +A E+L  G  +  PT+T+YG+  D+ N  A+ ++Y +K R    P+I 
Sbjct: 1   MTDIKVSKNIEEAAEYLKKGRIVIAPTDTLYGILADALNKDAVEKVYRLKGRTPTKPVIV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC-FRVP- 120
            +  +  +     V P S    KL     +T+V+DL              K +  FR+P 
Sbjct: 61  LIPQLEFLDLFC-VKP-SEREKKLLIHRGITVVIDLQDDCKERFFYLHRGKGSLGFRIPD 118

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                K++E    PL  PSAN  G+    ++   +S    K + L IDGG  K    ST+
Sbjct: 119 SDQLIKVMERIERPLIAPSANPEGKKPAEDIDQAVSYFGSK-VDLYIDGGTVKGKEPSTV 177

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS 207
           V +  +  + ++R G ++ + +KR + 
Sbjct: 178 VKI--DNGITVIREGSIKKDEIKRLLE 202


>gi|162447073|ref|YP_001620205.1| dsRNA binding, YrdC domain-containing protein [Acholeplasma
           laidlawii PG-8A]
 gi|161985180|gb|ABX80829.1| dsRNA binding, YrdC domain protein [Acholeplasma laidlawii PG-8A]
          Length = 182

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PT+TVYGL     +   ++++YEIK R    P+   +S++  VK+ A     +L +A
Sbjct: 5   LIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNALKVA 64

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
             FWPG LTL+ +   ++D +   +   KT   R+P      KLI+  G PL   S N S
Sbjct: 65  SKFWPGGLTLIFE---SSDAYYQQSGE-KTIGLRMPNHKLALKLIDELG-PLKTTSVNYS 119

Query: 144 GQISITNVKHIL 155
            Q  + +   I+
Sbjct: 120 NQPPLNDYDAIM 131


>gi|24371637|ref|NP_715679.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1]
 gi|81464359|sp|Q8EKQ3|RIMN_SHEON RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|24345396|gb|AAN53124.1|AE015455_5 Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1]
          Length = 188

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G+ IA PTE VYGL  D  N TAI++L  +K+RP    LI   S+ S +  +     
Sbjct: 14  LNGGV-IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLLAYVDESQ 72

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           L+   L LA   WPGP T V+ +     +         +   RV      + L +  G P
Sbjct: 73  LTDEQLELAFSKWPGPFTFVMPI--KPHVSRYLCGEFDSIAVRVSAHEGVRALCQALGKP 130

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           L   SAN +G+    +   IL+    K I  ++ G + +    STI++ +  K +R
Sbjct: 131 LVSTSANLAGEDPALSGDEILNVFEGK-IDALVLGQLGEQRQPSTIIDARSGKILR 185


>gi|313203740|ref|YP_004042397.1| translation factor sua5 [Paludibacter propionicigenes WB4]
 gi|312443056|gb|ADQ79412.1| translation factor SUA5 [Paludibacter propionicigenes WB4]
          Length = 201

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 18/208 (8%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RP 55
           ++ I D+N     +R+  E L  G  I  PT+ VY    +  N + +  + ++K+   R 
Sbjct: 2   LIKIYDTNPNPIEIRRVVEVLRKGGIIIFPTDGVYAFGCNIFNASGVEFIAKLKEHDMRK 61

Query: 56  AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           A    ICH  ++S + ++A +D +S  L K   PGP T +L+  S     P    N KT 
Sbjct: 62  ANLSFICH--EMSQISEYAKMDDVSFKLMKRNLPGPFTFILNGSSKL---PKLFKNKKTV 116

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGIS 172
             R+P      +++   G+PL   S     + +  IT+   ++      ++ ++IDGG+ 
Sbjct: 117 GIRMPQNNIALEIVRELGNPLMTSSIFTDEKTTEYITD-PELIEEKYGHQVDMVIDGGMG 175

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIE 200
            + + STIV+   ++ V I+R G  E++
Sbjct: 176 GL-IHSTIVDCTEDEPV-IIRQGAGELQ 201


>gi|258652314|ref|YP_003201470.1| Sua5/YciO/YrdC/YwlC family protein [Nakamurella multipartita DSM
           44233]
 gi|258555539|gb|ACV78481.1| Sua5/YciO/YrdC/YwlC family protein [Nakamurella multipartita DSM
           44233]
          Length = 216

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D+ N  A+R L   K R    P+   V   + +     +V P++  L
Sbjct: 29  VVLPTDTVYGIGADAFNAAAVRALLAAKGRGPDMPVPVLVGSWTTIDGLVMAVPPVARTL 88

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
            + FWPG L+LV++   +     L  A   T   R+P       L+   G P+A+ SANR
Sbjct: 89  VEAFWPGGLSLVVEHAPSLQWD-LGDAK-GTVMLRMPLHPVAIDLLRLVG-PMAVSSANR 145

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG    T       + + +++ + +DGG S IG+ ST+V+V  E   R+LR G + ++ L
Sbjct: 146 SGNPPATTAADA-QAQLGEQVSVYLDGGPSPIGVASTVVDVTGEIP-RVLRVGAVPLDRL 203

Query: 203 KRAIS 207
           +  + 
Sbjct: 204 RDVVG 208


>gi|56755217|gb|AAW25788.1| SJCHGC02454 protein [Schistosoma japonicum]
          Length = 268

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 36/205 (17%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA+PT+TVYGLA    N  +I R+  IK R    P+   +  +S +        +   L 
Sbjct: 45  IALPTDTVYGLACSVYNTESIERIRHIKGRSETKPMAICLDQVSHISHWCDTKNIPTGLL 104

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLS---TANLKTACFRVP-CGFTKKLIETY--------- 131
               PGP+T++L         PL+       +    R+P  GF +KLI            
Sbjct: 105 SDLLPGPVTVLLPRFPDKLQDPLNCHLNPGERRVGIRIPDSGFIRKLISALHEQTKLSST 164

Query: 132 ---------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-----ISKIGLE 177
                    GHPL + SAN SGQ S   ++    S I   I LI++GG     +  + L+
Sbjct: 165 SGNDEYSGGGHPLVLTSANLSGQPSAIQIEEF--SEIWPSIDLIVNGGPIQPSLPSVNLD 222

Query: 178 -----STIVNV-QCEKKV-RILRPG 195
                STI+++  C+K +  ++R G
Sbjct: 223 YNRSGSTIIDLCDCDKSIYYVVRSG 247


>gi|307132802|ref|YP_003884818.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein
           [Dickeya dadantii 3937]
 gi|306530331|gb|ADN00262.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein
           [Dickeya dadantii 3937]
          Length = 190

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  + TA+ RL  +K+RP    LI   +D   ++ +  +  LS +  
Sbjct: 23  IAYPTEAVFGLGCDPDSETAVERLLALKQRPREKGLILIAADFQQLEPYVDISALSDIQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPGP+T VL   + T      T    +   RV      K+L   +G PL   SA
Sbjct: 83  QTIFASWPGPVTWVLPAKTVT--PDWLTGRFTSLAVRVSDHPLVKQLCLVFGKPLVSTSA 140

Query: 141 NRSGQ 145
           N SGQ
Sbjct: 141 NLSGQ 145


>gi|288927572|ref|ZP_06421419.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330406|gb|EFC68990.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 189

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 5/151 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++KA E L  G  I  PT+T++G+  D+ N  A+ ++Y+IK+R     +IC V 
Sbjct: 1   MTREEDIKKAVEVLRKGGIILYPTDTIWGIGCDATNAEAVAKVYQIKQRDDSKAMICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             + ++++  +V  ++  L +L    P TL+LD     ++ P   A   +   RV    F
Sbjct: 61  SATRMQRYVRNVPNVAWDLVELA-TKPTTLILD--DAVNLAPNLIAEDGSVALRVTDEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +K+L   +   L   SAN SGQ +  N K I
Sbjct: 118 SKELCYRFQKALVSTSANISGQPAAQNYKDI 148


>gi|297619997|ref|YP_003708102.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3]
 gi|297378974|gb|ADI37129.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3]
          Length = 209

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 18/203 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A ++L  G     PT+T+YG+   + +   + R+Y+IK R    P    +   S +
Sbjct: 11  TLNDAKKYLKNGEIALCPTDTIYGICGYALDKNVVDRIYKIKNRDESKPFSISLQKKSDI 70

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC-----FRVPCGFTK 125
           +K+A V+ ++  L   F PGP+TL+L         P   +     C      R+P   +K
Sbjct: 71  QKYAKVNNVAKKLINKFLPGPITLIL---------PKKESIPDYICKDYVGIRIPD--SK 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            ++E    P+   SAN SG+ S  ++   +   I   + +IID G  +    STIV +  
Sbjct: 120 IILELSEIPITSTSANVSGRPSSYSISK-MDKEILNSVDIIIDDGDCEYKKPSTIVKI-I 177

Query: 186 EKKVRILRPGGLEIETLKRAISV 208
           +  + ++R G +  + + + +++
Sbjct: 178 DNDIELIREGSISFDNILKELNL 200


>gi|304382269|ref|ZP_07364776.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella marshii DSM 16973]
 gi|304336626|gb|EFM02855.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella marshii DSM 16973]
          Length = 189

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 5/147 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T    +R+A E L AG  I  PT+TV+G+  D+ N  A+ R+Y IK+R     LIC V 
Sbjct: 1   MTQQEDIRQAVEVLKAGGVILYPTDTVWGIGCDATNKEAVARIYRIKQREDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
           SD  + +    V P++  L  +    P T++LD     ++ P   A+  +   R+    F
Sbjct: 61  SDARLQRYVRDVPPVAWDLLDVA-EKPTTVILD--GAVNLAPNLIADDGSIALRITKEAF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITN 150
           +++L   +   +   SAN SGQ +  N
Sbjct: 118 SRELCYRFQKAIVSTSANISGQPAAQN 144


>gi|227548002|ref|ZP_03978051.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079908|gb|EEI17871.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 219

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 15/209 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ ++ A + + AG  + +PT+TVYG+  D+ N  A+ +L   K+R    P+   V   S
Sbjct: 15  TDGIKAAVDAIRAGQCVVMPTDTVYGIGCDAFNNDAVAKLLATKRRGPDMPVPVLVGSWS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTK 125
            V+         +  L + FWPG L++V+    +    P +  + + T   R+P      
Sbjct: 75  TVQGLVREFTDTAQTLVEAFWPGGLSIVVPEAPSL---PWNLGDTRGTVLLRMPNQPLAI 131

Query: 126 KLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           +L+   G P+ + SAN +G    ++ +  +    ++    +P+ +DGG S +G  STI++
Sbjct: 132 ELLREVG-PMGVSSANLTGNEPPVTTSAARQQFGNA----VPVYLDGGRSTVGEPSTIID 186

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211
           +     V ILR G +  E +   ++++ E
Sbjct: 187 ISGPSPV-ILRNGAISAERICEVLNLDPE 214


>gi|226360605|ref|YP_002778383.1| hypothetical protein ROP_11910 [Rhodococcus opacus B4]
 gi|226239090|dbj|BAH49438.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 218

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L  A   L AG  + +PT+T+YG+  D+ +  A+  L   K R    P+   V   +
Sbjct: 14  SAGLSAAKNALKAGRLVVLPTDTLYGIGADAFDSEAVAALLRAKGRGRDMPVPVLVGSWN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +     SV P +  L + FWPG L+LV++   +       T    T   R+P      +
Sbjct: 74  TIDGLVYSVRPQARDLIRAFWPGGLSLVVEQAPSLAWDLGDTRG--TVMLRMPLHPVALE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PLA+ SAN SG+   T V+      +     + +DGG ++ G  STIV++   
Sbjct: 132 LLREVG-PLAVSSANVSGRPPATTVEEA-REQLGGSASVYLDGGRAEQGQASTIVDLTGA 189

Query: 187 KKVRILRPGGLEIETLKRAISVELE 211
              RILR G +    +   + V  E
Sbjct: 190 AP-RILRVGAVPTGDVADVLGVTAE 213


>gi|271963196|ref|YP_003337392.1| Sua5_yciO_yrdC, YrdC domain-containing protein [Streptosporangium
           roseum DSM 43021]
 gi|270506371|gb|ACZ84649.1| Sua5_yciO_yrdC, YrdC domain protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 13/207 (6%)

Query: 9   SNALRKACEFLDA------GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++A ++A    DA      G  + +PT+TVYG+  D+  P+A+  L E K R    P+  
Sbjct: 8   TDAEQRAAGLTDAASAVRRGELVVLPTDTVYGIGADAFTPSAVTSLLEAKGRGRDMPVPV 67

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V  +        ++ P    L   FWPGPLTL+    +   +      +  T   R+P 
Sbjct: 68  LVGTVRAANALVENLGPYGQDLVDSFWPGPLTLI--CRANRSLSWDLGDSKGTVAIRMPL 125

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +L++  G P+A+ SANRSG  +           +   + + +DGG       STI
Sbjct: 126 HSVALELLKETG-PMAVSSANRSGAPAAITAADA-EKQLGDSVAVYLDGGPCADDTPSTI 183

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS 207
           +++      R+LR G + +E L+  I 
Sbjct: 184 LDLTTAVP-RLLRRGAVSVEKLRGVIG 209


>gi|116750183|ref|YP_846870.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699247|gb|ABK18435.1| translation factor SUA5 [Syntrophobacter fumaroxidans MPOB]
          Length = 225

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 6/204 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +++  +  A   L  G  +  PTET YGL  +  +P  +  ++ IKKR     L    S 
Sbjct: 26  SETEVVEAATSLLTRGGIVVYPTETFYGLGGNPLSPATVAAIFAIKKREREKALPLIASG 85

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           I  V++     P L+  LA  FWPGPLTL+L   +   + P   A+      RV      
Sbjct: 86  IQAVREWVEEFPALAERLAAAFWPGPLTLILR--AVHRLPPQVHASTGKIAIRVSSHPVA 143

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L  + G  +   SAN +GQ +   +  I    + +++  +ID G     L STIV+V 
Sbjct: 144 RALAASLGGLIVSTSANFTGQRACRTLAEI-PIELVRQVDGVIDAGRLPGSLPSTIVDVT 202

Query: 185 CEKKVRILRPGGLEIETLKRAISV 208
               + ++R G +    ++RA ++
Sbjct: 203 GGSPL-LVREGCVPFMEIERAAAL 225


>gi|317506168|ref|ZP_07963989.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255513|gb|EFV14762.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 213

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-HASVDPLSLHL 83
           + IPT+TVYGL  D+ +  A+  L   K R    P    V   + V+   A+V   +  L
Sbjct: 30  VVIPTDTVYGLGCDAFDQAAVAALLSAKGRGRDMPTPVLVGSWATVEGLTAAVTDQAWQL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
              FWPGPL+LVL +  +       T    T   R+P       +     P+A+ SANRS
Sbjct: 90  IHAFWPGPLSLVLPVAPSLAWDLGETRG--TVMVRMPLHPVALQVLGKVGPMAVSSANRS 147

Query: 144 GQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           GQ    +    K  L  S+     + ++ G + +G  STI+++      ++LR G L  E
Sbjct: 148 GQPPARTAAEAKEQLGDSVA----VYLESGSAPLGEPSTILDLSSGAP-KVLREGALSAE 202

Query: 201 TLKRAISV 208
            +   + V
Sbjct: 203 RIAEVLGV 210


>gi|298207806|ref|YP_003715985.1| hypothetical protein CA2559_06115 [Croceibacter atlanticus
           HTCC2559]
 gi|83850444|gb|EAP88312.1| hypothetical protein CA2559_06115 [Croceibacter atlanticus
           HTCC2559]
          Length = 186

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 9/186 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L K    L  G  I  PT+T++G+  D+ N  A+++++E+KKR     L+C V D  M+ 
Sbjct: 5   LNKCLNVLKKGGLILYPTDTIWGIGCDATNYDAVQKVFELKKRAESKALVCLVHDYKMLN 64

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           ++    P   +    +   P T++ D   L++   +    +  ++ A  +    F   L+
Sbjct: 65  QYIENIPEVAYDILKYAQKPTTIIYDKAKLVAENVVGEDESLAVRVAKDK----FCNDLV 120

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCEK 187
           + +  PL   SAN SG+ S  N K I S  I K +  +++   +K +   S I+ +  + 
Sbjct: 121 KKFKRPLVSTSANISGKPSPKNFKEI-SDEILKGVDYVVNLHQNKNMAKPSAIIKLGSDG 179

Query: 188 KVRILR 193
            V++LR
Sbjct: 180 MVKVLR 185


>gi|330470259|ref|YP_004408002.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032]
 gi|328813230|gb|AEB47402.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032]
          Length = 194

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 9/178 (5%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD---PLSLHL 83
           +PT+TVYGLAV   +PTAI RL+ +K RP    L   V     + +   VD     S  L
Sbjct: 13  LPTDTVYGLAVRPDSPTAIDRLFAMKGRPREKNLPVMVGSGEQLSELG-VDINEACSRCL 71

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A  + PGPLTL +  +      P   A       R+P       I     PL + SAN S
Sbjct: 72  ASPYMPGPLTLAVGFVEDGR-RPAWLAGRDEVAVRIPAHPAMLAILAQTGPLLVTSANIS 130

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
           G  +  NV  ILSS + +    +  G +SK+   ST+VN  C K   ++   G+  ET
Sbjct: 131 GGPTHENVPSILSSLLFEPDVTVDRGPLSKV--PSTLVN--CRKDPPVVERVGVVSET 184


>gi|86132791|ref|ZP_01051383.1| Sua5/YciO/YrdC/YwlC family protein [Dokdonia donghaensis MED134]
 gi|85816745|gb|EAQ37931.1| Sua5/YciO/YrdC/YwlC family protein [Dokdonia donghaensis MED134]
          Length = 186

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 9/183 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  I  PT+TV+G+  D+ NP A+ ++Y +KKR     LIC VSD  M+ ++ 
Sbjct: 8   ALAVLKRGGLILYPTDTVWGIGCDATNPDAVDKVYALKKRAESKSLICLVSDFKMLNQYV 67

Query: 75  SVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
              P   +    +   P T++ D    ++T  I P ++   +  C    C F   L++ +
Sbjct: 68  ENIPEVAYDILKYAAKPTTIIYDDPIRVATNVIAPDNSTAFR-VCRNQFCNF---LLKKF 123

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKVR 190
             P+   SAN +GQ +  +   I S  I   +  +++   S K    S I+ +  + KV 
Sbjct: 124 KKPIVSTSANITGQPTPQSFSEI-SQEIIDGVDYVVNIDRSRKSSKPSAIIKLTEDGKVT 182

Query: 191 ILR 193
           I+R
Sbjct: 183 IIR 185


>gi|224535867|ref|ZP_03676406.1| hypothetical protein BACCELL_00731 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522590|gb|EEF91695.1| hypothetical protein BACCELL_00731 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 187

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 20/164 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++       +V 
Sbjct: 5   IKKACQVMNEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     + ++ W        PLT++       ++ P   A   +   RV   GF+
Sbjct: 59  SPVKVDFYVQDVPEVAWDLIEVADKPLTIIYS--GARNLAPNLIAEDGSVGIRVTNEGFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           K+L + +   +   SAN SGQ S  N      S I +E+  ++D
Sbjct: 117 KRLCQQFRKAIVSTSANISGQPSPANY-----SEITEELKSMVD 155


>gi|47222938|emb|CAF99094.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 655

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 9/181 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI- 67
           +++L+     L+ G    IPT+TVY LA   +NP AI ++Y IK RPA  P+   +S++ 
Sbjct: 464 TSSLQTIAACLEEGGVCGIPTDTVYALAASCKNPQAIEKIYNIKDRPAEKPVCICISNVE 523

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLS--TANLKTACFRVP-C 121
            +V       PL     +  +PG ++ ++   D L    + P         +   RVP  
Sbjct: 524 QLVAAKPPFSPLLWEFMRNVYPGGISCIISKGDWLLRLGVGPAYDRVGTSDSIMIRVPDH 583

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  L +  G PLAI SAN SG+   T+   ++S    K   ++ DG  +++ + ST+V
Sbjct: 584 TVTSHLCDITG-PLAITSANPSGEADSTHHDMVISRLGHKIQGVLCDGHSNEV-VASTVV 641

Query: 182 N 182
           N
Sbjct: 642 N 642


>gi|126172293|ref|YP_001048442.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS155]
 gi|152998587|ref|YP_001364268.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185]
 gi|217971252|ref|YP_002356003.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223]
 gi|212288219|sp|A3CYL0|RIMN_SHEB5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288220|sp|A6WHB6|RIMN_SHEB8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|125995498|gb|ABN59573.1| translation factor SUA5 [Shewanella baltica OS155]
 gi|151363205|gb|ABS06205.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185]
 gi|217496387|gb|ACK44580.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223]
          Length = 188

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 10/175 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81
           IA PTE VYGL  D  N TAI++L  +K+RP    LI   SD   +  +     L+   L
Sbjct: 19  IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQL 78

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
             A   WPGP T V+ +     +         +   RV      + L      PL   SA
Sbjct: 79  EFAFSKWPGPFTFVMPI--KAHVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVSTSA 136

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           N +G+        IL+    K I  ++ G + +    STI++ +  K   ILR G
Sbjct: 137 NLAGEDPALTAAEILADFTGK-IDALVLGELGEQRQPSTIIDARSGK---ILRNG 187


>gi|124025123|ref|YP_001014239.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           NATL1A]
 gi|123960191|gb|ABM74974.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           NATL1A]
          Length = 199

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 82/173 (47%), Gaps = 13/173 (7%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH--VSDISMVKKHASVDPLSLHLA 84
            PT+T+  L      P   ++++ IKKRP+  PLI     SD      H      SL LA
Sbjct: 31  FPTDTLPALC---SYPKYSKKIWTIKKRPSSKPLILMGGCSDDLFEFVHPCALEESLQLA 87

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
           K++WPG LT+VL  +   +       N     FRVP     + +     PLA  SAN SG
Sbjct: 88  KIYWPGALTMVLPTIG--NFSKYLNGNSNAVGFRVPALRIARDLLMQTGPLATTSANISG 145

Query: 145 QISITNVKHILSSSI-CKEIPLIID-GGISKIGLESTIVNVQCEKKVRILRPG 195
           +   T VK  + +SI   EIP++      S  G+ ST+V  +   K  +LRPG
Sbjct: 146 E---TPVKDAMEASIQFPEIPILAPIPWPSSSGMASTVVEWK-NGKWNLLRPG 194


>gi|254796933|ref|YP_003081770.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str.
           Illinois]
 gi|254590181|gb|ACT69543.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str.
           Illinois]
          Length = 195

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 6/180 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +  PTETVY LA D+ N  A+ R+Y+IK+R     L   V+ IS ++  AS + 
Sbjct: 9   LRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNIKKNLPVMVAGISQLESFASFNE 68

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
               L K   PGP+T +L    +  +       +     RVP      K++  +  P+  
Sbjct: 69  SQARLIKECCPGPVTFILKRKKSAHLRFRFPEKVAV---RVPDSKVALKILRGFNRPVFA 125

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            S N SG+ ++++   I  S + K +  II       G  S+I+++  ++ V ++R G  
Sbjct: 126 TSVNLSGRPAVSSFTQI-GSYMKKRVSRIICDNRGVKGTASSIIDISGKRAV-LVRKGAF 183


>gi|88608553|ref|YP_506460.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600722|gb|ABD46190.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 195

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 6/180 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +  PTETVY LA D+ N  A+ R+Y+IK+R     L   V+ IS +   AS + 
Sbjct: 9   LRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNE 68

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
               L +   PGP+T +L    +  +       +     RVP      K++  +  P+  
Sbjct: 69  SQARLIQECCPGPVTFILKRKKSAHLRFRFPEKVAV---RVPDSKVALKILRGFKRPVFA 125

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            S N SG+ +++N   I  S I K +  II       G  S+I+++  ++ V ++R G  
Sbjct: 126 TSVNLSGRPAVSNFTQI-GSYIKKRVSRIICDNREVKGTASSIIDISGKRAV-LVRKGAF 183


>gi|304412740|ref|ZP_07394343.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183]
 gi|307305795|ref|ZP_07585541.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175]
 gi|304348950|gb|EFM13365.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183]
 gi|306911288|gb|EFN41714.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175]
          Length = 188

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 10/175 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81
           IA PTE VYGL  D  N TAI++L  +K+RP    LI   SD   +  +     L+   L
Sbjct: 19  IAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQL 78

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
             A   WPGP T V+ +     +         +   RV      + L      PL   SA
Sbjct: 79  EFAFSKWPGPFTFVMPI--KAHVSKYLCGEFDSIAVRVSAHAGVQTLCRALNKPLVSTSA 136

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           N +G+        IL+    K I  ++ G + +    STI++ +  K   ILR G
Sbjct: 137 NLAGEDPALTAAEILADFTGK-IDALVLGELGEQRQPSTIIDARSGK---ILRNG 187


>gi|145300980|ref|YP_001143821.1| Sua5/YciO/YrdC family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|212277666|sp|A4ST51|RIMN_AERS4 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|142853752|gb|ABO92073.1| Sua5/YciO/YrdC family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 186

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 9/152 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81
           IA  TE V+GL  D  +  A++RL  IK+RP    LI   +D+  ++ +  +  LS   L
Sbjct: 18  IAYATEAVFGLGCDPDSELAVQRLLAIKQRPVEKGLILIAADLVQLQDYIDLSQLSGEQL 77

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
              +  WPGP T ++   +TT      T    T   RV      + L   +G PL   SA
Sbjct: 78  ARVEASWPGPFTWIMPARATTPT--WLTGQFDTLAVRVTAHPQVQALCRAFGKPLVSTSA 135

Query: 141 NRSGQI---SITNVKHILSSSICKEIPLIIDG 169
           N +G+     +T++  +L+S +   +P  + G
Sbjct: 136 NLTGEEPARRVTDIGELLASKLAYILPGEVGG 167


>gi|78049489|ref|YP_365664.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925733|ref|ZP_08187108.1| translation factor SUA5 [Xanthomonas perforans 91-118]
 gi|123584024|sp|Q3BNJ9|RIMN_XANC5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|78037919|emb|CAJ25664.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543861|gb|EGD15269.1| translation factor SUA5 [Xanthomonas perforans 91-118]
          Length = 187

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  L +A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S
Sbjct: 1   MTDTLDLDRAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIKRRPVEKGVIVVAS 60

Query: 66  DISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + +++    +D   P         WPGP T +L +  T       T        R+   
Sbjct: 61  SVDLLRDWVDIDALEPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L   +G PL   SAN +G+    + +  L  ++   I  ++DG    +   + I 
Sbjct: 119 PVVAALCAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177

Query: 182 NVQCEKKVR 190
           + +  + +R
Sbjct: 178 DARSGQILR 186


>gi|294664410|ref|ZP_06729767.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605816|gb|EFF49110.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 187

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 9/190 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  L +A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S
Sbjct: 1   MTDTLDLGRAVAALTQGGVIAYPTEAVWGLGCDPRQQAAVMRLLEIKRRPVEKGVIVVAS 60

Query: 66  DISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121
            + +++    +   +P         WPGP T +L +   TD  P   T        R+  
Sbjct: 61  SVDVLRDWVDIEALEPARRQDVLTSWPGPHTWILPI---TDRAPRWVTGEHDGLAVRISA 117

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +G PL   SAN +G+    + +  L  ++   I  ++DG    +   + I
Sbjct: 118 HPVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQI 176

Query: 181 VNVQCEKKVR 190
            + +  + +R
Sbjct: 177 RDARSGQILR 186


>gi|153807334|ref|ZP_01960002.1| hypothetical protein BACCAC_01612 [Bacteroides caccae ATCC 43185]
 gi|149129696|gb|EDM20908.1| hypothetical protein BACCAC_01612 [Bacteroides caccae ATCC 43185]
          Length = 187

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++       +V 
Sbjct: 5   IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     +  + W        PLT++       ++ P   A   +   RV    F+
Sbjct: 59  SSVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEAFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           K+L + +   +   SAN SGQ    N   I
Sbjct: 117 KRLCQQFRKAIVSTSANVSGQPGAANFSEI 146


>gi|325284999|ref|YP_004260789.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489]
 gi|324320453|gb|ADY27918.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489]
          Length = 196

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + K    L+ G  I  PT+TV+G+  D+ N  A+ ++Y++KKR     +IC V++  M
Sbjct: 13  DEINKCITVLENGGVILYPTDTVWGIGCDATNEDAVNKIYQLKKRANTKTMICLVANDFM 72

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           ++KH    P            P T+V D  +  +I     A  K+   RV    F + LI
Sbjct: 73  LEKHVEKVPEVAFDIIDIADKPTTIVYD--NPKNIAKNLIAEDKSLAIRVATDKFCQYLI 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID--GGISKIGLESTIVNVQCE 186
             +  P+   SAN SG  +  + K I SS I K +   ++    I K+   S+I+ +  +
Sbjct: 131 SKFKKPIVSTSANLSGDPTAKSFKEI-SSDILKGVDYAVNLQRNIQKV-TPSSIIKLSND 188

Query: 187 KKVRILR 193
             V+++R
Sbjct: 189 GTVKVIR 195


>gi|197334056|ref|YP_002157319.1| putative yrdC domain protein [Vibrio fischeri MJ11]
 gi|197315546|gb|ACH64993.1| putative yrdC domain protein [Vibrio fischeri MJ11]
          Length = 185

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L  G  IA PTE V+G+  D  N  A+  L ++KKRP    LI   + I  + 
Sbjct: 4   LNQVVDALKQGNVIAYPTEGVFGVGCDPDNEQALLNLLDVKKRPKEKGLILIAASIEQLL 63

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  ++ L+   ++  K  WPGP+T ++ + ++T   PL T    +   RV      K +
Sbjct: 64  PYIDLEQLTEEQVNTIKASWPGPVTWIVPVKTST--LPLVTGQFDSIAVRVTAHPQVKAI 121

Query: 128 IETYGHPLAIPSANRSG 144
              +G P+   SAN SG
Sbjct: 122 CNAFGKPITSTSANLSG 138


>gi|85711001|ref|ZP_01042062.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein
           [Idiomarina baltica OS145]
 gi|85695405|gb|EAQ33342.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein
           [Idiomarina baltica OS145]
          Length = 184

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL  D RN  AIR++  +K+RP    LI   +D S +  +  V   ++   
Sbjct: 18  IAYPTEAVFGLGCDPRNEEAIRKILTLKERPEDKGLILIAADYSQLTPY--VKDSAIGQD 75

Query: 85  KLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIP 138
           K F     WPGP+TL+L    T  + PL T    T   RV      ++L    G  L   
Sbjct: 76  KRFSVLSHWPGPVTLILPARDT--VSPLLTGGRDTIAVRVTAYEPVRELCRKLGTALVST 133

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIID 168
           SAN SG+      + + S     E+  + D
Sbjct: 134 SANPSGEEPARTAQEV-SGYFGDEVDWVWD 162


>gi|59713143|ref|YP_205919.1| ribosome maturation factor [Vibrio fischeri ES114]
 gi|75353187|sp|Q5E1R5|RIMN_VIBF1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|59481244|gb|AAW87031.1| predicted ribosome maturation factor [Vibrio fischeri ES114]
          Length = 185

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L  G  IA PTE V+G+  D  N  A+  L ++KKRP    LI   + I  + 
Sbjct: 4   LNQVVDALKQGNVIAYPTEGVFGVGCDPDNEQALLNLLDVKKRPKEKGLILIAASIEQLL 63

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  ++ L+   ++  K  WPGP+T ++ + ++T   PL T    +   RV      K +
Sbjct: 64  PYIDLEQLTEEQVNTIKASWPGPVTWIVPVKTST--LPLVTGQFDSIAVRVTAHPQVKAI 121

Query: 128 IETYGHPLAIPSANRSG 144
              +G P+   SAN SG
Sbjct: 122 CNAFGKPITSTSANLSG 138


>gi|256820498|ref|YP_003141777.1| SUA5/yciO/yrdC domain-containing protein [Capnocytophaga ochracea
           DSM 7271]
 gi|256582081|gb|ACU93216.1| SUA5/yciO/yrdC domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 185

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 67/138 (48%), Gaps = 19/138 (13%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  I  PT+TV+GL  D+ NP A+ ++++IK+R     LI  VSD  M++ + + 
Sbjct: 9   EILKAGKVILYPTDTVWGLGCDATNPEAVAKIFQIKQRSESKSLIILVSDTEMLQHYVTD 68

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDI---HPLSTAN-----LKTACFRVPCG-FTKKL 127
            P          P  LT +  L   T I   HPL  A        T   RV    F +++
Sbjct: 69  IP----------PKVLTYLQTLQEPTTIIYSHPLHLAKNVIAADNTVAIRVVQDVFCQQM 118

Query: 128 IETYGHPLAIPSANRSGQ 145
           I  +G P+   SAN SG+
Sbjct: 119 IADFGKPIVSTSANISGE 136


>gi|325280506|ref|YP_004253048.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324312315|gb|ADY32868.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 202

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 19/191 (9%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRR---LYEIKKRPAMNPLICHVSDISMV 70
           K  E L AG  I  PT+T+Y +  D  N  A++R   L  IK   A   +IC   D+S +
Sbjct: 17  KVVEVLKAGGIIIYPTDTIYAIGCDINNVKAVQRVCQLKNIKPEKANFSMICR--DLSNI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
             +A V+     + K   PGP T VL   +T  +  +     KT   R+P  +    ++E
Sbjct: 75  AAYAKVNNEVFKVMKRNLPGPFTFVLP--ATNKLPNVMINRRKTIGIRIPDNYIVMSIVE 132

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKE-----IPLIIDGGISKIGLESTIVNVQ 184
             G+PL   S     ++    V+++    +  E     + L+IDGG  +  + ST+V+  
Sbjct: 133 ELGNPLLTTSVKAEDEV----VEYMTDPELIHEKYEKLVDLVIDGGFGQ-NVASTVVDCT 187

Query: 185 CEKKVRILRPG 195
            + ++ ++R G
Sbjct: 188 -DDRIEVIRQG 197


>gi|308177038|ref|YP_003916444.1| Sua5 family translation factor [Arthrobacter arilaitensis Re117]
 gi|307744501|emb|CBT75473.1| putative Sua5 family translation factor [Arthrobacter arilaitensis
           Re117]
          Length = 227

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 17/204 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLHL 83
           I +PT+TVYG+  D+ +   +  L   K R   M P +      +M      +   +  L
Sbjct: 30  IVLPTDTVYGIGADAFSAQGVAMLLAAKGRNRTMPPPVLIAQSATMDGLARDIPDEARKL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYGHPLAIPS 139
           A+ FWPG LTL+L         P  T +L     T   RVP   T   +     PLA+ S
Sbjct: 90  AEAFWPGGLTLIL------HAQPSLTWDLGETRGTVALRVPNDETALELLGQTGPLAVSS 143

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG---LESTIVNVQCEKKVRILRPG 195
           ANR+G  +  N++  L   +   + + +DGG   + G   L STI++    + + ++R G
Sbjct: 144 ANRTGNPAALNIEQAL-EQLGDSVDVYLDGGPRGEEGDDVLPSTIIDC-TGQHLSVVRSG 201

Query: 196 GLEIETLKRAISVELEYCVDETST 219
            + IE L+  +   L+   D   T
Sbjct: 202 AISIEELRVVVPGILDLGQDAPET 225


>gi|262201850|ref|YP_003273058.1| sua5/YciO/YrdC/YwlC family protein [Gordonia bronchialis DSM 43247]
 gi|262085197|gb|ACY21165.1| Sua5/YciO/YrdC/YwlC family protein [Gordonia bronchialis DSM 43247]
          Length = 219

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 19/209 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +R A   + AG  + +PT+T+YGL  D+ +  A+  L   K R    P+   V    
Sbjct: 14  SAGIRAAVGAIKAGRLVVMPTDTLYGLGCDAFDSDAVSALLAAKNRGRDMPVPVLVGSWH 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDL-------LSTTDIHPLSTANLKTACFRVP 120
            +     +V   +  L + FWPG L+LV++        L  TD          T   R+P
Sbjct: 74  TIDGLVLTVSQAARDLVEAFWPGGLSLVVEQAPSLAWDLGDTD---------GTVMLRMP 124

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  +     P+A+ SAN SGQ   T       + + +++ + +DGG +     STI
Sbjct: 125 LHPVAIEVLREVGPMAVSSANVSGQRPATTADDA-RAQLGEDVAVYLDGGPAPAAQASTI 183

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVE 209
           V+V      RILR G +  E +   + V+
Sbjct: 184 VDVTGPVP-RILRVGAVTTEQVAEVLDVD 211


>gi|56459134|ref|YP_154415.1| Sua5 family translation factor [Idiomarina loihiensis L2TR]
 gi|81362897|sp|Q5QXJ5|RIMN_IDILO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|56178144|gb|AAV80866.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family [Idiomarina
           loihiensis L2TR]
          Length = 186

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL  D RN  A+++L  +K+RPA   LI   +D S +  +  V+  ++   
Sbjct: 17  IAYPTEAVFGLGCDPRNEVAVQKLLSLKQRPAEKGLILIAADYSQLLPY--VEDSAIAQD 74

Query: 85  KLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIP 138
           K F     WPGP+TL+L +     +  L T    T   RV      + L    GH L   
Sbjct: 75  KRFSVLSHWPGPVTLILPV--RKGVSTLLTGGRDTIAVRVTAHEPARALCRELGHALVST 132

Query: 139 SANRSGQ 145
           SAN +GQ
Sbjct: 133 SANLTGQ 139


>gi|325280221|ref|YP_004252763.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324312030|gb|ADY32583.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 190

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 18/142 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +RK    L  G  I  PT+T++GL  D+ NP A++R+Y+IKKR     ++  + D   + 
Sbjct: 9   IRKTLGILKNGGVILYPTDTIWGLGCDATNPEAVKRIYDIKKRADNKSMLVLLDDAGKIA 68

Query: 72  KHASVDPLSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            +A V  ++L L +       + +PG   L  +L+          A   T   R+    F
Sbjct: 69  SYADVPDIALDLIEVADKPTTIIYPGAKRLAPNLI----------AEDGTIGIRITREEF 118

Query: 124 TKKLIETYGHPLAIPSANRSGQ 145
           T+ LI  Y  P+   SAN SG+
Sbjct: 119 TRSLIFRYNKPIVSTSANISGE 140


>gi|88801030|ref|ZP_01116579.1| hypothetical protein MED297_05069 [Reinekea sp. MED297]
 gi|88776233|gb|EAR07459.1| hypothetical protein MED297_05069 [Reinekea sp. MED297]
          Length = 185

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 9/189 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T +  L+ A E L  G  IA PTE VYGL  D  N  A+ R+  IK+RP    +I  V+
Sbjct: 1   MTFNQPLQIAAETLLEGGVIAYPTEGVYGLGCDPFNADAVSRILTIKRRPVHKGVIL-VA 59

Query: 66  DISMVKKHASVDPLS-LHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           D  + +    ++PL+    A+L   WPGP T V+       +    T    T   RV   
Sbjct: 60  D-RLERFEPFLNPLNDAQRAQLKAHWPGPYTWVIP--HNGRLPEWVTGGRPTVAVRVSAH 116

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + L E  G P+   SANRSG+ S+     +  +++ ++I  ++ G +   G  S I 
Sbjct: 117 PLARALSERSGLPIVSTSANRSGRPSLVTSLQV-RTALGQDIDCLLHGRVQTPGQASQIT 175

Query: 182 NVQCEKKVR 190
           ++   ++ R
Sbjct: 176 DLISGQRFR 184


>gi|323345671|ref|ZP_08085894.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oralis ATCC 33269]
 gi|323093785|gb|EFZ36363.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oralis ATCC 33269]
          Length = 189

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 5/151 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T +  ++ A E +  G  I  PT+TV+G+  D+ N  A+ ++Y IK+R     LIC V 
Sbjct: 1   MTQAEDIKNAVEIMKKGGVILYPTDTVWGIGCDATNAEAVAKVYRIKQRDDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           SD+ M +   +V  ++  + +L    P T++LD     ++ P   A   +   R+    F
Sbjct: 61  SDVRMQRYVRNVPNVAWDIMELA-TKPTTVILD--DAVNLAPNLIAEDGSIAMRITKEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           + +L   +  PL   SAN SGQ + +N + I
Sbjct: 118 SHELCYRFQKPLVSTSANISGQPAASNYRDI 148


>gi|293399949|ref|ZP_06644095.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306349|gb|EFE47592.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 203

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 10/183 (5%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            + L  G  +A PT+TVYGLAV   N  A+  L + K RP   P+   VS+   +++ A 
Sbjct: 15  ADLLKEGKVVAFPTDTVYGLAVIYENEAALEALKKSKGRPENKPIPTMVSNFRQMEEIAY 74

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134
           +   +  LA+ F PG  T++L       +    T    T   R+P       LI+    P
Sbjct: 75  MSEDARKLAEEFMPGGFTMILK--KKEHLPAYLTNGFDTVGIRMPDDDIILHLIDLCEKP 132

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNVQCEKKVRIL 192
           L + SAN SG+      + +L   +   I  I+ G  G SK    STIV++  + ++RI+
Sbjct: 133 LLVTSANLSGEEPQETAEGVL-KQLDGRIDAIVVGESGGSKA---STIVDMSTD-ELRIV 187

Query: 193 RPG 195
           R G
Sbjct: 188 REG 190


>gi|15668233|ref|NP_247026.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2500922|sp|Q60369|Y062_METJA RecName: Full=Uncharacterized protein MJ0062
 gi|1498824|gb|AAB98044.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 207

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)

Query: 13  RKACEFLDA----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +K  EFL      G  +   T+T+YG++ ++ N  A+R++Y IK+R    PL   V D +
Sbjct: 19  KKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKN 78

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVL-------DLLSTTDIHPLSTANLKTACFRVPC 121
            ++K+A V+ L+  +   F PGPLT++L       D+++   I             R+P 
Sbjct: 79  EIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPGIPDIVAKDYIG-----------IRIP- 126

Query: 122 GFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              + +I E    PL   SAN SG+ S T V  I    + K++  +ID G  K    ST
Sbjct: 127 --DEPIIRELSIVPLTTTSANISGKESPTTVDEI-DKEVLKKVDYVIDIGKCKYSKPST 182


>gi|145295341|ref|YP_001138162.1| hypothetical protein cgR_1281 [Corynebacterium glutamicum R]
 gi|140845261|dbj|BAF54260.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 216

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 11/209 (5%)

Query: 8   DSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           DS A  L+ A + + AG  + +PT+T+YGL  D+ N  A+  L   K R    P+   V 
Sbjct: 11  DSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPDMPVPVLVG 70

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG- 122
               ++    S    +  L + FWPG L++++    +    P +  + + T   R+P   
Sbjct: 71  SWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSL---PWNLGDTRGTVMLRMPLHP 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              +L+   G P+A+ SAN SG    + V       + + + + +DGG   IG  STIV+
Sbjct: 128 VAIELLRQTG-PMAVSSANISGHTPPSTVLEA-RQQLNQNVSVYLDGGECAIGKPSTIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211
           +      +ILR G +  E +   + V  E
Sbjct: 186 ISGPAP-KILREGAISAERVGEVLGVSAE 213


>gi|307327908|ref|ZP_07607090.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu
           4113]
 gi|306886426|gb|EFN17430.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu
           4113]
          Length = 215

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 21/206 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+TVYG+  D+ N  A+  L E K R    P    V   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFNAEAVGDLLEAKGRGRNMPTPVLVGSPNT 74

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-F 123
           +    +    ++  L   FWPG LTLV          P  T +L     T   R+P    
Sbjct: 75  LHGLVTDFSEMAWELVDAFWPGALTLV------ARHQPSLTWDLGETRGTVAVRMPLHPV 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +L+  +G P+A+ SAN +G  S  +    + +L  S+     + +DGG +   + S+I
Sbjct: 129 AIELLTDFG-PMAVSSANLTGHPSPQDCDAAQDMLGDSVS----VYLDGGPTPAAVPSSI 183

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAI 206
           V+V  +  V +LR G L  E L+  +
Sbjct: 184 VDVTGKVPV-LLRAGALTAEQLREVV 208


>gi|269957241|ref|YP_003327030.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305922|gb|ACZ31472.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 236

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 14/230 (6%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +  +TD N    A+ +A   +  G  + +PT+TVYG+A ++ +  A+  +   K R    
Sbjct: 8   VHDVTDPNTWGAAIDEAVNAVRRGALVVLPTDTVYGVAAEAFDAGAVAAIGTAKGRADRT 67

Query: 59  PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P    V D+  +   A+ V   +  LA  FWPG LTLV  L +   +      N      
Sbjct: 68  PPPVLVPDVRTLDGLATEVSDDARALADAFWPGALTLV--LRAQPSLQWDLGDNRGVVAL 125

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       +     PLA+  A R G+ +  +      + +   + + +DGG    G  
Sbjct: 126 RMPDHPAALALLRRTGPLAVTGAQRVGETAPLDADAA-RAQLGDAVAVYLDGGPVP-GGG 183

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDE---TSTPQSP 223
           ST+V+       R++RPG +++E L+  + ++E     D+   TS P  P
Sbjct: 184 STVVDATVTPP-RVVRPGAIDVEALREVVPAIEPLAAEDDAPATSPPADP 232


>gi|260771095|ref|ZP_05880023.1| YrdC family protein [Vibrio furnissii CIP 102972]
 gi|260613984|gb|EEX39175.1| YrdC family protein [Vibrio furnissii CIP 102972]
          Length = 185

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N      + L +G  IA PTE V+G+  D  NP AI +L ++K+RP    LI   +    
Sbjct: 2   NNFEHTLQALQSGEVIAYPTEGVFGVGCDPDNPQAIEKLLQLKQRPVEKGLILIAASYQQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L   +  WPGP+T ++   ++  +    +    T   RV      +
Sbjct: 62  LLPYVDESQLTQEQLERVQSTWPGPVTWIMP--ASERVSHWVSGQFDTIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSG 144
           KL   YG PL   SAN SG
Sbjct: 120 KLCLAYGKPLTSTSANLSG 138


>gi|170724414|ref|YP_001758440.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908]
 gi|212288229|sp|B1KCX0|RIMN_SHEWM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|169809761|gb|ACA84345.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908]
          Length = 185

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + +++G  +A PTE VYGL  D  N  AI +L  IKKRP    LI   SD   +  +   
Sbjct: 11  QVIESGGVVAYPTEAVYGLGCDPDNDAAITKLLAIKKRPWEKGLILVASDYQQLLPYIDD 70

Query: 77  DPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYG 132
             L+     ++F  WPGP T ++ +     I  L   +  +   RV    T + I +  G
Sbjct: 71  SQLTEEQRERVFSKWPGPFTFIMPI--KPGISNLLCGSFNSLAVRVSDHPTIQAICQQLG 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN SG+    + + IL +    EI  ++ G + +    STI++    K +R
Sbjct: 129 KPLVSTSANHSGEEPAMSHEEIL-AKFEGEIDALVAGSLGEQRKPSTIIDAISGKILR 185


>gi|229819785|ref|YP_002881311.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM
           12333]
 gi|229565698|gb|ACQ79549.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM
           12333]
          Length = 338

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 17/211 (8%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M ++  TD +    +L  A E +  G  I +PT+TVYG+A D+ +  A+  L   K R  
Sbjct: 1   MTLLDCTDPDNREKSLDAAVEAVTHGGLIVLPTDTVYGIAADAFDKDAVAALLAAKGRGR 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL--- 112
             P    V D S +   A+  P  +  L + FWPG LT+++         P  T +L   
Sbjct: 61  QKPPPVLVGDHSTLDGLATDVPEVVRTLIERFWPGALTIIV------RAQPSLTWDLGYT 114

Query: 113 -KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
             T   R+P       +     PLA  SANR+G+             +   + + +DGG 
Sbjct: 115 RGTVALRMPDDEIALDVLRRTGPLATSSANRTGR-PAATTAAEAQEQLGARVGVYLDGGP 173

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           ++ G  STI++      + I+R G L +E L
Sbjct: 174 ARGGEASTIIDATG-PTLSIVREGALSVEVL 203


>gi|331695521|ref|YP_004331760.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950210|gb|AEA23907.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 214

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 7/188 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D+ + TA+R L   K R    P+   V   S +      V   +  L
Sbjct: 29  VVLPTDTVYGIGCDAFSATAVRSLLAAKGRGPDMPVPVLVGSWSTIDGLVIGVPTAAREL 88

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L+LVL    +      +T    T   R+P      +L+   G P+A+ SANR
Sbjct: 89  IEAFWPGGLSLVLQHAPSLAWDLGTTRG--TVMLRMPLHPVALELLRDVG-PMAVSSANR 145

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG     +      + + + + + +DGG ++  + ST+V++  +   R+LR G + +  +
Sbjct: 146 SGHAPAVDAADA-VAQLGEHVAVYLDGGPTEENVPSTVVDLTADAP-RVLREGAVSVAAI 203

Query: 203 KRAISVEL 210
              +  E+
Sbjct: 204 SEVLGREV 211


>gi|297526270|ref|YP_003668294.1| Sua5/YciO/YrdC/YwlC family protein [Staphylothermus hellenicus DSM
           12710]
 gi|297255186|gb|ADI31395.1| Sua5/YciO/YrdC/YwlC family protein [Staphylothermus hellenicus DSM
           12710]
          Length = 216

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 13/198 (6%)

Query: 10  NALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           N +R+A   L+  GL + I T+T+YG+  D      + ++Y  KKR +  P+    S   
Sbjct: 14  NIVREAYRILENCGLVVGI-TDTLYGIFADPFRDECVSKVYVAKKR-SRKPIPLLASSPK 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            V      D       +  WPGP+T+VL   D + +  IH L T  +    FRVP     
Sbjct: 72  AVFSITDADHFLQRFLETIWPGPITVVLKPMDNMFSEKIH-LGTGKI---GFRVPASPLP 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +KL +  G  +   SAN SG     N+   +   +   + L ID G + IG  ST++++ 
Sbjct: 128 RKLAQLNGGFITGTSANISGLKPARNIDEAI-KQLGNNVDLYIDSGTAPIGEPSTVIDLT 186

Query: 185 CEKKVRILRPGGLEIETL 202
            EK + I+R G +   ++
Sbjct: 187 SEKPI-IVRDGAVSYRSI 203


>gi|212550954|ref|YP_002309271.1| SUA5 family translation factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549192|dbj|BAG83860.1| putative SUA5 family translation factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 189

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 7/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K CE L  G  +  PT+T++GL  D+ N  A+ R++ IKKRP    ++  +     + 
Sbjct: 6   IAKTCEILRNGGIVLYPTDTIWGLGCDASNEEAVERIFFIKKRPNTRTMLILLDSFDELH 65

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            +    P ++  L  +F   PLT++       ++ P   A+  T   R+    F+K+L  
Sbjct: 66  NYVENLPEITPDLIDIFHKKPLTIIYS--GAKNVAPNLIASDGTLGIRITKDFFSKQLCF 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID--GGISKIGLESTIVNVQCEK 187
              +PL   SAN SGQ + T    I S+ I + +  +++    I +    S+I+ ++   
Sbjct: 124 QLKNPLVSTSANISGQATPTTFSEI-SNEIIESVDYVVNYKRNIIQSAKPSSIIQIENGN 182

Query: 188 KVRILR 193
            ++++R
Sbjct: 183 SIKVIR 188


>gi|167525667|ref|XP_001747168.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774463|gb|EDQ88092.1| predicted protein [Monosiga brevicollis MX1]
          Length = 300

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 14/180 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PT+T+YG+A  +++ TA+++LY+IK+R    P+   V  ++ V  +A V      L 
Sbjct: 97  VALPTDTIYGIAAVAQSATAVQKLYDIKERDPAKPIAICVPKVADVYTYAHVTVPDDVLH 156

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           +L  PG +T+V        ++PL   +      RV     T+ ++     P+A+ SAN++
Sbjct: 157 QLL-PGAVTVVFK--RKPALNPLLNPDTDLIGIRVTNHSLTQAIVAGLQAPIALTSANKA 213

Query: 144 GQISITNV---KHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKKVRILRPGGLE 198
           G  S       +H+  +  C     ++DGG    G  L ST+V++   +   +LR G  E
Sbjct: 214 GAASCVQADEFEHLWPALGC-----VVDGGRLGTGSRLGSTVVDLSKPQTFALLRDGDAE 268


>gi|70952331|ref|XP_745341.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525633|emb|CAH80221.1| hypothetical protein PC000787.03.0 [Plasmodium chabaudi chabaudi]
          Length = 169

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 10/137 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-VKKHASVDPLSLHL 83
           I  PTETVYGL  +S +  +++ ++++K RP  +P+I HV DI+    +   ++    ++
Sbjct: 30  IGFPTETVYGLGGNSLSEISLKNIFKMKNRPVSDPIISHVYDIAQAFDQLYHINMYEKYI 89

Query: 84  AKL----FWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKKLIETYGHPLAI 137
             +    F PGPL+++       +  PL  TA+ +    R+P     +++I+    P+A 
Sbjct: 90  IYILNSNFSPGPLSVI---AKAKEYLPLILTAHTQFCAVRIPNNKIAREIIKICNIPIAA 146

Query: 138 PSANRSGQISITNVKHI 154
           PSAN+   IS TN  H+
Sbjct: 147 PSANKFQHISPTNSLHV 163


>gi|319951890|ref|YP_004163157.1| translation factor sua5 [Cellulophaga algicola DSM 14237]
 gi|319420550|gb|ADV47659.1| translation factor SUA5 [Cellulophaga algicola DSM 14237]
          Length = 192

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 5/184 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L  G  I  PT+TV+G+  D+ N  A+ ++Y +KKR     +IC V++  M++
Sbjct: 11  INKCIEILSKGGLILYPTDTVWGIGCDATNEEAVAKIYALKKRENTKTMICLVANDFMLE 70

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           KH S  P   +        P T+V D  +   +     A   T   RV    F + LI  
Sbjct: 71  KHVSAVPEVAYDIIDLATKPTTIVYD--NPKGVAKNLVAEDNTLAIRVASDKFCQYLISN 128

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEKKV 189
           +  P+   SAN +G+ +    + I S +I K +  +++       G  S+I+ +  +  V
Sbjct: 129 FKKPIVSTSANIAGETTPQTFQEI-SIAILKGVDYVVNLHQDQNSGTPSSIIKLGNDGVV 187

Query: 190 RILR 193
           +I+R
Sbjct: 188 KIIR 191


>gi|160873162|ref|YP_001552478.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195]
 gi|212288221|sp|A9KUA7|RIMN_SHEB9 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|160858684|gb|ABX47218.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195]
 gi|315265387|gb|ADT92240.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS678]
          Length = 188

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 74/175 (42%), Gaps = 10/175 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81
           IA PTE VYGL  D  N TAI +L  +K+RP    LI   SD   +  +     L+   L
Sbjct: 19  IAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQL 78

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
             A   WPGP T V+ +     +         +   RV      + L      PL   SA
Sbjct: 79  EFAFSKWPGPFTFVMPI--KAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVSTSA 136

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           N +G+        IL+    K I  ++ G + +    STI++ +  K   ILR G
Sbjct: 137 NLAGEDPALTAAEILADFTGK-IDALVLGELGEQRQPSTIIDARSGK---ILRNG 187


>gi|260911833|ref|ZP_05918400.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634044|gb|EEX52167.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 189

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T    ++KA E L  G  I  PT+T++G+  D+ N  A+ ++Y+IK+R     +IC V 
Sbjct: 1   MTREEDIKKAVEVLRKGGVILYPTDTIWGIGCDATNAEAVAKVYQIKQRDDSKAMICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           S + M +   +V  ++  L +L    P TL+LD     ++ P   A   +   RV    F
Sbjct: 61  SAMRMQRYVRNVPNVAWDLVELA-TKPTTLILD--DAVNLAPNLIAEDGSVALRVTTEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +K+L   +   L   SAN SG+ +  N K I
Sbjct: 118 SKELCYRFQKALVSTSANISGEPAAANYKDI 148


>gi|126465445|ref|YP_001040554.1| translation factor SUA5 [Staphylothermus marinus F1]
 gi|126014268|gb|ABN69646.1| translation factor SUA5 [Staphylothermus marinus F1]
          Length = 216

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 13/200 (6%)

Query: 10  NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           N +++A   L + GL + + T+T+YG+  D      + R+Y +KKR    P+    S   
Sbjct: 14  NIIQEAYRILKSCGLVVGV-TDTLYGIFADPFRDECVSRIYVVKKRKG-KPIPLLASSPK 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            V    +++       ++ WPGP+T++L   D + + +IH L T  +    FRVP     
Sbjct: 72  AVFSITNINHNLQRFLEVIWPGPVTVILKPIDSIFSEEIH-LGTEKI---GFRVPASPLP 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +KL E  G  +   SAN SG     N++  +   +   I L ID G + IG  ST++++ 
Sbjct: 128 RKLAELNGGFITGTSANISGLKPAKNIEEAI-KQLGNNIDLYIDSGTAPIGEPSTVIDLT 186

Query: 185 CEKKVRILRPGGLEIETLKR 204
            EK + I+R G +   ++ R
Sbjct: 187 SEKPL-IVRDGVVSYRSIIR 205


>gi|319789197|ref|YP_004150830.1| Sua5/YciO/YrdC/YwlC family protein [Thermovibrio ammonificans HB-1]
 gi|317113699|gb|ADU96189.1| Sua5/YciO/YrdC/YwlC family protein [Thermovibrio ammonificans HB-1]
          Length = 206

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 6/190 (3%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            ++AG    +PT+T+YGL   + N  A+ R+Y IK R    PLI        + +     
Sbjct: 16  LINAGAVGCLPTDTLYGLVGSALNGNAVSRVYRIKGRDPNKPLIVLFKSPEQLGELGVKV 75

Query: 78  PLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
           P +L    K  +P P+TLVL L  ++     S         RVP       +     PL 
Sbjct: 76  PKALEKGIKALYPAPVTLVLPLSESSPFR--SIFKRDDLAVRVPNSPLLLELLELTGPLF 133

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN  G     N +  L       +    +G    +   STIV V  E ++++LR G 
Sbjct: 134 APSANPQGLKPAENCRECL-KYFKNAVDFCAEGRAGNVA--STIVKVLPEGELKLLREGA 190

Query: 197 LEIETLKRAI 206
           +E E +K  +
Sbjct: 191 VEFEKVKEVL 200


>gi|308274797|emb|CBX31396.1| Uncharacterized protein yciO [uncultured Desulfobacterium sp.]
          Length = 201

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 4/160 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L     IA PT+T YG+  D  N  AI ++Y +K+R   +P     S +  + 
Sbjct: 15  ISKVIDILKKDGVIAYPTDTYYGIGCDIMNKKAIEKIYLLKQREKNSPFSFMCSGLKNIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
            +A V   +    K   PGP T VL+   +  +  +   N KTA  RVP       L+E 
Sbjct: 75  DYAKVSNYAYKTMKRLLPGPYTFVLE--GSKLVPKIMLTNRKTAGIRVPNNIICLALVEE 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            G+P+   SA         N   ++       I L+IDGG
Sbjct: 133 LGNPIITTSATMPDGTVFDN-PSLIHEYYKTRINLVIDGG 171


>gi|186476189|ref|YP_001857659.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815]
 gi|184192648|gb|ACC70613.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815]
          Length = 230

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +++G  +A+PT++ Y LA    N  A+ R+  I+       L   V D+S + 
Sbjct: 36  IKQAAQIIESGGVVALPTDSSYALACQLDNRNAVDRVRRIRGIDERQLLSLLVRDLSELA 95

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++E
Sbjct: 96  NFALVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILE 153

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+    N    +   + K++ L+IDGG       ST++++  E+ V
Sbjct: 154 ELGQPLLGSTLILPGETQPLNDPAEIRERLEKQLDLVIDGGACPCE-PSTVIDLTGEEPV 212

Query: 190 RILRPG 195
            ++RPG
Sbjct: 213 -LVRPG 217


>gi|320352189|ref|YP_004193528.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
 gi|320120691|gb|ADW16237.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
          Length = 205

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 5/190 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L  G  I  PT+T+YG+  D  N  A++R+Y+IK+RP   P     + ++ + ++
Sbjct: 19  QAVDILQHGGVICYPTDTMYGVGCDIFNQKAVKRVYQIKRRPKDKPFSFMCASLTNISQY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
             V   +  L +   PGP T VL    T  +  +     KT   RVP       ++E  G
Sbjct: 79  GHVGNTAYRLMRKNLPGPYTFVLS--GTKMVPKIMLTKQKTVGIRVPNHPVCLAMLELLG 136

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
           +P+   SA              +     K++ LIID G   +   S+++++  E+   +L
Sbjct: 137 NPVLNTSAMIEDDDQPVRTAMDVERLFGKQVDLIIDSG-EIVPAPSSVISLLSEQP-EVL 194

Query: 193 RPGGLEIETL 202
           R G  +I   
Sbjct: 195 REGRGDISAF 204


>gi|227501696|ref|ZP_03931745.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC
           49725]
 gi|227077721|gb|EEI15684.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC
           49725]
          Length = 222

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           + +PT+T+YGL  D+ +  A+  L   K+R    P+   V   + V+   +  P S   L
Sbjct: 31  VVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLVGSWNTVRGLVASYPDSTRDL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141
            + FWPG L++V+    +    P +  + + T   R+P      +L+   G P+A+ SAN
Sbjct: 91  VEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSAN 146

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG    T  + +    + K + + +DGG + IG  STI+++  +    +LR G L  E 
Sbjct: 147 ISGHQPPTTAQ-MAKDQLGKAVTVYLDGGETDIGKPSTIIDLSGDHPY-LLREGALSAEE 204

Query: 202 LKRAISVELE 211
           +   + V  +
Sbjct: 205 IGEVLGVSAD 214


>gi|312139169|ref|YP_004006505.1| hypothetical protein REQ_17520 [Rhodococcus equi 103S]
 gi|325673526|ref|ZP_08153217.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus equi ATCC 33707]
 gi|311888508|emb|CBH47820.1| conserved hypothetical protein [Rhodococcus equi 103S]
 gi|325555547|gb|EGD25218.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus equi ATCC 33707]
          Length = 219

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 7/203 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   L AG  + +PT+TVYGL  D+ +  A+  L   K R    P+   V   + +
Sbjct: 16  GLTAAKNSLKAGRLVVLPTDTVYGLGADAFDGDAVASLLRAKGRGRDMPVPVLVGSWNTI 75

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                SV P +  L K FWPG L++V+    +     L  +   T   R+P      +L+
Sbjct: 76  DGLVYSVRPQARELIKAFWPGGLSIVVQQAPSL-AWDLGDSR-GTVMLRMPLHPVALELL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A+ SAN SG+   T V       +     + +DGG +   + STIV++  + +
Sbjct: 134 RDVG-PMAVSSANISGRPPATTVDEA-RDQLGGAASVYLDGGPATHAVASTIVDLTGD-E 190

Query: 189 VRILRPGGLEIETLKRAISVELE 211
           +RILR G +    +   + V  E
Sbjct: 191 IRILREGAVPTADVAEVLGVTPE 213


>gi|327405619|ref|YP_004346457.1| translation factor SUA5 [Fluviicola taffensis DSM 16823]
 gi|327321127|gb|AEA45619.1| translation factor SUA5 [Fluviicola taffensis DSM 16823]
          Length = 205

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 17/202 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL---YEIKKRPAMNPLICHV 64
           D+  +++  + L  G  I IPT+ VY +A D  N   +  L    ++K   A   +IC  
Sbjct: 11  DNRLVQQVVDELKKGGIIIIPTDAVYAVACDVMNKKGLAELAKWKDVKLSKANFSIIC-- 68

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           SD+S V ++   +D  +  L K + PGP T +LD  +T+++  L  ++ K    R+P   
Sbjct: 69  SDLSEVSEYVKQLDRNTFRLLKHYLPGPFTFILD--ATSEVSKLFDSSKKEIGIRIPDNK 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK----EIPLIIDGGISKIGLES 178
             + ++E  G+P+A+ S + S    +     +  +SI +    E+ +IIDGG  K+   S
Sbjct: 127 IVQAIVERLGNPMAVTSLHDSEDEIME--YFVDPASIYERYDDEVAIIIDGGPGKLD-AS 183

Query: 179 TIVNVQCEKKVRILRPGGLEIE 200
           TIV+        I+R G  +I+
Sbjct: 184 TIVDC-TNGNAEIIRQGVGQID 204


>gi|296393118|ref|YP_003658002.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rotundus DSM
           44985]
 gi|296180265|gb|ADG97171.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rotundus DSM
           44985]
          Length = 214

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 4/185 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-HASVDPLSLHL 83
           + +PT+TVYGL  D+ +  A+  L   K R    P    +   + V+   A+V   +  L
Sbjct: 30  VVMPTDTVYGLGCDAFDQGAVAALLSAKGRGRDMPTPVLIGSWATVEGLAATVSDQAWQL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
              FWPGPL+LVL +  +       T    T   R+P       +     P+A+ SANRS
Sbjct: 90  IHAFWPGPLSLVLPVAPSLAWDLGETRG--TVMVRMPLHPVALQVLAKVGPMAVSSANRS 147

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           GQ             +   + + ++ G + +G  STI+++    +  +LR G L +  + 
Sbjct: 148 GQPPARTAAEA-REQLGDSVSVYLESGPAPLGEPSTILDLSSGGEPTVLRQGALSVRQIT 206

Query: 204 RAISV 208
               V
Sbjct: 207 ETTGV 211


>gi|268593577|ref|ZP_06127798.1| protein RimN [Providencia rettgeri DSM 1131]
 gi|291310854|gb|EFE51307.1| protein RimN [Providencia rettgeri DSM 1131]
          Length = 189

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL  D  + TA+ +L E+K+RP    LI        +K +   + L+    
Sbjct: 22  IAYPTEAVFGLGCDPDSETAVYKLLELKQRPWEKGLILIADSYEQLKDYIDDEQLTEEQK 81

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETYGHPLAIPSA 140
           +     WPGP+T V+    TT      T    T   RV      KKL   YG PL   SA
Sbjct: 82  QAMFATWPGPVTWVIPAKVTTP--KWLTGRFDTIAVRVTDHELVKKLCRHYGKPLVSTSA 139

Query: 141 NRSG 144
           N SG
Sbjct: 140 NLSG 143


>gi|218295665|ref|ZP_03496461.1| Sua5/YciO/YrdC/YwlC family protein [Thermus aquaticus Y51MC23]
 gi|218243824|gb|EED10351.1| Sua5/YciO/YrdC/YwlC family protein [Thermus aquaticus Y51MC23]
          Length = 196

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 19/204 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+      L +A E L  G  +A PT+TV+G+     +  A RR+Y +K R    PL   
Sbjct: 1   MTEVYQKELAQAAEVLKKGGLVAFPTDTVWGVMARMEDEAACRRIYALKGREEKKPLQVL 60

Query: 64  VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           V+ +    + + + PL    L LA+ FWPG LT+V   +    I P  + +  +   R+P
Sbjct: 61  VAGLEDALRLSDLGPLEERFLRLAEAFWPGALTIV---VPGRGIPPWISRD-GSVGLRMP 116

Query: 121 C--GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 + L    GH  A  S NRSG+  +       + +  +  P+         GL S
Sbjct: 117 AHEALRELLRRVGGHATAT-SLNRSGEPPVK------TEAEARAFPVDFVFPGEATGLAS 169

Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202
           ++V+++  +   ILR G +  E L
Sbjct: 170 SVVDLRTGE---ILREGAIPKEAL 190


>gi|306835873|ref|ZP_07468868.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC
           49726]
 gi|304568238|gb|EFM43808.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC
           49726]
          Length = 222

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 9/190 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           + +PT+T+YGL  D+ +  A+  L   K+R    P+   V   + V+   +  P S   L
Sbjct: 31  VVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLVGSWNTVRGLVASYPDSTRDL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141
            + FWPG L++V+    +    P +  + + T   R+P      +L+   G P+A+ SAN
Sbjct: 91  VEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSAN 146

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG    T  + +    + K + + +DGG + IG  STI+++  +    +LR G L  E 
Sbjct: 147 ISGHQPPTTAQ-MAKDQLGKAVTVYLDGGETDIGKPSTIIDLSGDHPY-LLREGALSAEE 204

Query: 202 LKRAISVELE 211
           +   + V  +
Sbjct: 205 IGEVLGVSAD 214


>gi|237806935|ref|YP_002891375.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187]
 gi|237499196|gb|ACQ91789.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187]
          Length = 186

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++AC+ L +G  IA  TE V+GL  D  N TA+ +L +IK+RP    LI   +    + 
Sbjct: 5   LQQACQILRSGGVIAYATEAVFGLGCDPDNETAVHKLLQIKQRPIEKGLILIAASWEQLA 64

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  V  L+   L  A+  WPGP T V     +T      T    +   R+      + L
Sbjct: 65  PYLDVSLLTEEQLQRAQKSWPGPYTWVFPAKISTP--KWLTGQFSSLAVRISAHPQVQAL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              YG P+   SAN +       V+ +  S +   I  I+ G + K    S I +V   +
Sbjct: 123 CLMYGKPMVSTSANLTSLPPCRTVEDV-RSQLTGRIDYILPGDVGKQTNPSEIRDVITNQ 181

Query: 188 KVR 190
            +R
Sbjct: 182 LIR 184


>gi|117927851|ref|YP_872402.1| translation factor SUA5 [Acidothermus cellulolyticus 11B]
 gi|117648314|gb|ABK52416.1| translation factor SUA5 [Acidothermus cellulolyticus 11B]
          Length = 219

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 11/212 (5%)

Query: 1   MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           +Q+   +D    +  L+ A + +  G  + +PT+TVYG+  D+  P A+  L   K R  
Sbjct: 3   VQVFDCSDPGQRTAGLQAAADAVRRGQLVVLPTDTVYGIGADAFTPAAVAALLAAKGRGR 62

Query: 57  MNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P+   V    +     A+  P +  L   FWPG LT+V+   + +    L   N  T 
Sbjct: 63  DMPVPVLVGSRPVFDALVAAAPPTAYALIDAFWPGGLTIVVR-YNPSLAWDLGETN-GTV 120

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      +L++  G P+A+ SANRSG    T   +   + + + + + +DGG +  
Sbjct: 121 ALRMPAEDLALELLQRTG-PMAVSSANRSGLPPATTCANA-RAQLGEAVAVYLDGGPTTS 178

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            + S+IV++  E    +LR G +E E L+  +
Sbjct: 179 TIPSSIVDLTGETPT-LLRSGAIEAERLREVV 209


>gi|269794322|ref|YP_003313777.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542]
 gi|269096507|gb|ACZ20943.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542]
          Length = 251

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 15/205 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +A   + AG  + +PT+TVYG+  D+ +  A+  L   K R    P    V  ++ +
Sbjct: 18  SLDEAVNTVQAGALVVLPTDTVYGIGADAFDADAVAALLAAKGRGRQMPPPVLVGSVATL 77

Query: 71  KKHASVDPLSLH-LAKLFWPGPLTLVLDLLST-----TDIHPLSTANLKTACFRVPCGFT 124
              A+  P +   LA  FWPG LTL+L    +      D H        T   R+P   T
Sbjct: 78  DGLATEVPEAARALATRFWPGALTLILTAQPSLAWDLGDTH-------GTVALRMPDHPT 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              +     P+A+ SAN +G  + T V+    + +   +   +D G +  G+ STIV+  
Sbjct: 131 ALALLARTGPMAVSSANLTGGPAATTVEEA-HAQLGSSVRTYLDAGAAPGGVASTIVDAT 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVE 209
            E  +R++R G + +E L+    VE
Sbjct: 190 GE-TLRVVRAGAISLEELRTVTHVE 213


>gi|157959867|ref|YP_001499901.1| SUA5/yciO/yrdC domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|212288224|sp|A8GYH9|RIMN_SHEPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|157844867|gb|ABV85366.1| SUA5/yciO/yrdC domain [Shewanella pealeana ATCC 700345]
          Length = 187

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH- 73
           A E ++ G  IA PTE VYGL  D  N  AI +L +IK+RP    LI    D   +  + 
Sbjct: 9   AAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYI 68

Query: 74  --ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
             + ++   L  A+  WPGP T ++ +     +  L +    +   RV      K L   
Sbjct: 69  DESQLNAQQLAFAQSKWPGPFTFIMPV--KPGLSKLLSGAFDSIAVRVTAHAGVKALCAA 126

Query: 131 YGHPLAIPSANRSGQ 145
              P+   SAN SGQ
Sbjct: 127 IHKPIVSTSANLSGQ 141


>gi|317153990|ref|YP_004122038.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944241|gb|ADU63292.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 204

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 2/185 (1%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           + AG  +  PTET+Y L  D+ +  A  ++ +IK R A+ PL   +  + M+       P
Sbjct: 8   MTAGDVVVYPTETLYALGCDATSEAACEKVMDIKGRSAVKPLPLIIGGVDMLGLVTDDRP 67

Query: 79  LS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
            + L LA  FWPGPL++++  L       LS  +  T+       F  +L      P+  
Sbjct: 68  AALLELASSFWPGPLSILVKALPELP-SCLSDEDGYTSVRWSGHPFASELSRRLRKPIVA 126

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN SG++ +   + +    +     + +D    K G  ST++ V    ++ +LR G +
Sbjct: 127 TSANLSGEVPVALPEDLSPRLVELAGAVYVDPPWPKGGKPSTVIRVLGATRLEVLREGAV 186

Query: 198 EIETL 202
            ++ L
Sbjct: 187 SVKKL 191


>gi|160916151|ref|ZP_02078358.1| hypothetical protein EUBDOL_02178 [Eubacterium dolichum DSM 3991]
 gi|158431875|gb|EDP10164.1| hypothetical protein EUBDOL_02178 [Eubacterium dolichum DSM 3991]
          Length = 202

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 13/175 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PT+TVYGL V   +  A+  L   K RP   P+   V  ++ +++ A ++  +  LA
Sbjct: 24  IAFPTDTVYGLGV-IYDEEALAALKYSKGRPENKPIPTMVGSLAQMEEIAVLNEEAKKLA 82

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
             F PG  T++L       +    T  ++T   R+P   F  +L+   G P+ + SAN S
Sbjct: 83  AAFMPGAFTMILK--KKDSVADFVTNGMETIGIRMPQDDFVLELLRQVGSPMLVTSANLS 140

Query: 144 GQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKKVRILRPG 195
           G+ +      ++   +  ++   IDG   G +   + STIV++    K++ILR G
Sbjct: 141 GEAT-----GLVDVQVLSQLDGRIDGIVLGEAGGKVASTIVDM-TSGKLKILREG 189


>gi|283957715|ref|ZP_06375168.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|283791166|gb|EFC29981.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 213

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 31/210 (14%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR---PAMNPLICHVSDISMVKKHAS 75
           L  G P+ +PT+T Y L     N   I +++E KKR    +++  I    D  +   + +
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKSLSLFIDKPEDWKLYGDNQN 77

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            + +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I     P+
Sbjct: 78  TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPI 134

Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           AI SAN SG    I IT          NV+++L S              +     STI+ 
Sbjct: 135 AITSANISGTANDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212
           V  + K+ +LR G ++ E +K  +   + Y
Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212


>gi|332525339|ref|ZP_08401504.1| Sua5/YciO/YrdC/YwlC [Rubrivivax benzoatilyticus JA2]
 gi|332108613|gb|EGJ09837.1| Sua5/YciO/YrdC/YwlC [Rubrivivax benzoatilyticus JA2]
          Length = 207

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 12/196 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           L++A E L  G  +A+PT++ Y L     D      +RRL  I  +  +  L+C   D+S
Sbjct: 17  LKQAAELLRGGDVLAVPTDSSYALVCRLDDKAAAEQLRRLRGIDDKHLLT-LLCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126
            +  +A VD     L KL  PGP T +LD  +T ++   +S  + +T   RVP    T+ 
Sbjct: 74  ELANYARVDNRQYRLLKLGTPGPYTFILD--ATKEVPRRVSHPSRRTIGLRVPDHQVTQD 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  YG PL   +    G     N    +   + K +P IID G   +   +T++++  E
Sbjct: 132 LLAVYGEPLLATTLILPGDDEPLNDVDEIQDRLGKLLPAIIDAGACPME-PTTVLDMTAE 190

Query: 187 KKVRILRPGGLEIETL 202
             V ++R G  E+  L
Sbjct: 191 DPV-LVRQGRGELSRL 205


>gi|315178580|gb|ADT85494.1| translation factor [Vibrio furnissii NCTC 11218]
          Length = 185

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N      + L +G  IA PTE V+G+  D  NP AI +L ++K+RP    LI   +    
Sbjct: 2   NNFEHTLQALQSGEVIAYPTEGVFGVGCDPDNPQAIEKLLQLKQRPVEKGLILIAASYQQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L   +  WPGP+T ++   ++  +    +    T   RV      +
Sbjct: 62  LLPYIDESQLTQEQLERVQSTWPGPVTWIMP--ASERVSHWVSGQFDTIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSG 144
           KL   YG PL   SAN SG
Sbjct: 120 KLCLAYGKPLTSTSANLSG 138


>gi|162457645|ref|YP_001620012.1| putative translation factor [Sorangium cellulosum 'So ce 56']
 gi|161168227|emb|CAN99532.1| Putative translation factor [Sorangium cellulosum 'So ce 56']
          Length = 201

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 7/190 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + +  G  I  PT+TVYG   D  N  AI R+Y+IK       L     D+S + ++
Sbjct: 17  RAIDLIQKGEVIGYPTDTVYGFGCDLMNKAAIERVYQIKGMRQNKNLAFICPDLSDIARY 76

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
           A V+  +  + K + PGP T +L   +T ++        KT   RVP       L+   G
Sbjct: 77  AIVENQTYRILKRYLPGPYTFILP--ATREVPKYVHLKQKTVGIRVPNHPVALALVRALG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PL   +A   G+  I +   I        + L++D G     + +T++++  + +V+I+
Sbjct: 135 RPLISTTAAPPGEDPIIDPGEI--DDRFPGLALVLDAGTGG-SVPTTVIDL-SQGEVQIV 190

Query: 193 RPGGLEIETL 202
           R G   I+ L
Sbjct: 191 REGAGPIDDL 200


>gi|119943865|ref|YP_941545.1| ribosome maturation factor [Psychromonas ingrahamii 37]
 gi|212288218|sp|A1SR31|RIMN_PSYIN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|119862469|gb|ABM01946.1| translation factor SUA5 [Psychromonas ingrahamii 37]
          Length = 191

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 11/186 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A + L +   IA PTE+V+GL  D     AI+++  +K+RPA   LI   + I  ++
Sbjct: 10  LNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIEQLE 69

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           K+A    L+   L + K  WPGP+T ++   S  ++  L + + ++   RV      +++
Sbjct: 70  KYADFSLLTAAQLTVIKKTWPGPITWIVP--SQKNLSKLISGDFESVAVRVTAHPIVRQI 127

Query: 128 IETYGHPLAIPSANRS---GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              +  P+   SAN S     +S   V  +  S+    + L+ID  +S +   + I +  
Sbjct: 128 CLAFDKPIISTSANLSSLEAALSSQQVNKMFKSNTL--LNLVIDAPVSGLSTPTQIFHAS 185

Query: 185 CEKKVR 190
             K++R
Sbjct: 186 TGKRLR 191


>gi|330996846|ref|ZP_08320715.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329572289|gb|EGG53948.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 202

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 18/194 (9%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVSDI 67
           KA + L  G  I  PT+TVY +  D+ N  A+ R+  +K    +NP      +IC+  D+
Sbjct: 17  KALKMLRDGELIIYPTDTVYAIGCDALNVRAVERICALK---GVNPQKSNLSIICY--DL 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
           S + ++A V   +  L K   PGP T +   L T+   P    N K    RVP     + 
Sbjct: 72  SNISEYAQVSNAAFKLLKKNLPGPFTFI---LPTSSRLPKIYKNKKEVGIRVPDNSIARG 128

Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L+E  G+PL   S +   + I  +    ++       + L+IDGG    G E++ V    
Sbjct: 129 LVEGLGNPLLTMSVHDEDEIIEYSTDPELIHEKYEGRVALVIDGGYG--GSEASTVVDCV 186

Query: 186 EKKVRILRPGGLEI 199
           +    I+R G  E+
Sbjct: 187 DDAFEIVRQGKGEL 200


>gi|282918675|ref|ZP_06326412.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317809|gb|EFB48181.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus C427]
          Length = 213

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +    D  +   + +
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            + +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I      +
Sbjct: 78  TEIVD-KLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSAI 134

Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           AI SAN SG    I IT          NV+++L S              +     STI+ 
Sbjct: 135 AITSANISGTANDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212
           V  + K+ +LR G ++ E +K  +   + Y
Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212


>gi|304309712|ref|YP_003809310.1| putative translation factor (SUA5) [gamma proteobacterium HdN1]
 gi|301795445|emb|CBL43643.1| putative translation factor (SUA5) [gamma proteobacterium HdN1]
          Length = 193

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 7/185 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSDISMV 70
           L +A + L  G  IA PTE V+GL+ D  NP A++R+ ++K+R P+   L+   ++ ++ 
Sbjct: 8   LPQAVKILHEGGVIACPTEAVWGLSCDPFNPMAVQRILDLKQRDPSKGLLLVAANEQAIA 67

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              A + P+ L   +  WPGP T ++       + P    N      R+       +L E
Sbjct: 68  PLLAHLAPVLLERLRAHWPGPFTFLIPDPQNW-VPPYVKGNHPHVAVRISAHPLVHRLCE 126

Query: 130 TYGHPLAIPSANRSGQI---SITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQC 185
            +G PL   SAN+ G     S T++++ L++     + P I+ G        + I+++  
Sbjct: 127 AFGGPLVSTSANQQGAPPARSETDLRNWLNTLENTADRPHILPGSTGGQTNPTRIIDLMS 186

Query: 186 EKKVR 190
            + VR
Sbjct: 187 GETVR 191


>gi|254515167|ref|ZP_05127228.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR5-3]
 gi|219677410|gb|EED33775.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR5-3]
          Length = 208

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + +  G  I  PT++ Y L     +  A+ R+  I+K    +       D+S + 
Sbjct: 17  VRQAADIVRGGGVIVYPTDSAYALGCHIGDKAALDRIRRIRKLDDRHNFTLVCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD +   L K + PGP T +L   +TT++   L  +  +T   RVP    T+ L+ 
Sbjct: 77  TYARVDNVVYRLLKQYTPGPYTFILK--ATTEVPRRLMQSKRRTIGLRVPDNAITQALLG 134

Query: 130 TYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             G PL   S    G     I    ++ +L      E+ L++DGG    G+E+T V    
Sbjct: 135 DLGEPLMSVSLIMPGDELPLIDPYEIRELLE----HEVDLVVDGGYC--GMEATTVVDLA 188

Query: 186 EKKVRILRPG 195
           ++K  +LR G
Sbjct: 189 DEKPMLLRAG 198


>gi|269202591|ref|YP_003281860.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|262074881|gb|ACY10854.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 213

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 92/210 (43%), Gaps = 31/210 (14%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS---DISMVKKHAS 75
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +    D  +   + +
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            + +   L ++FW GPL ++L   ++ +    ++ ++   C  V     ++ I     P+
Sbjct: 78  TEIVD-KLVEIFWSGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPI 134

Query: 136 AIPSANRSG---QISIT----------NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           AI SAN SG    I IT          NV+++L S              +     STI+ 
Sbjct: 135 AITSANISGTADDILITENEAIKHMGENVRYMLRSQ-----------NKTNYKTSSTIIK 183

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212
           V  + K+ +LR G ++ E +K  +   + Y
Sbjct: 184 V-TDNKIELLREGDIKFEEIKERLGTGIIY 212


>gi|77359010|ref|YP_338585.1| double-stranded RNA-binding protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123587103|sp|Q3IDH7|RIMN_PSEHT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|76873921|emb|CAI85142.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 187

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++D + +  A   L  G  I  PTE VYGL  D  N  A+ RL  IK+RP    LI    
Sbjct: 1   MSDQSTIAAAITCLAQGEVILYPTEAVYGLGCDPDNQQAVERLLAIKQRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDPLSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +   + K+  VD   + +   A +F  WP  +T V+     T      T    T   RV 
Sbjct: 61  NYGQLLKY--VDDAKIPMDKRADIFSSWPNAITWVMPAAKNT--PKWLTGQYDTIAVRVT 116

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              T K+L + +G PL   SAN SGQ ++ ++     S   ++I   +D
Sbjct: 117 NHPTVKRLCQEFGKPLVSTSANLSGQNTVLSIAEA-KSQFTEQIGYYVD 164


>gi|311740612|ref|ZP_07714439.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304132|gb|EFQ80208.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 9/200 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH- 73
           A +   +G  + +PT+T+YGL  D+ +  A+  L   K+R    P+   V     V+   
Sbjct: 22  AVKAAQSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLVGSWDTVRGLV 81

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETY 131
           AS    +  L + FWPG L++V+    +    P +  + + T   R+P      +L+   
Sbjct: 82  ASYTDTARDLVEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREV 138

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A+ SAN SG    T    +    + K + + +DGG + +G  STI+++  E    +
Sbjct: 139 G-PMAVSSANISGHQPPTTA-LMAKQQLGKAVTVYLDGGETAVGKPSTIIDLSGECPY-L 195

Query: 192 LRPGGLEIETLKRAISVELE 211
           LR G L  E +   I V+ +
Sbjct: 196 LREGALSAEEIGEVIGVDAQ 215


>gi|294633614|ref|ZP_06712172.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14]
 gi|292830256|gb|EFF88607.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14]
          Length = 155

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIHV--N 244
           ILRPGG+  E L+ A+   L   V  TST + PG   SHYAPR++V L    + +H    
Sbjct: 15  ILRPGGVTREDLEAALGHPL--TVPATSTVRVPGQHPSHYAPRARVVLVAPEKVVHEAEQ 72

Query: 245 PREALIRFGNV-PIKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            RE   R G + P    E+A+ +  +      L   A  L+ +++  D  G   I  S  
Sbjct: 73  ARELGHRVGVLLPPGLTEDAVPAHAVVPVPDSLTAYARGLYGHLRELDQRGCDLIVASLP 132

Query: 303 PNHGLGIAINNRLERAAAPR 322
              GLG+AI NRL RAA PR
Sbjct: 133 EEKGLGLAIANRLRRAAGPR 152


>gi|28278078|gb|AAH45238.1| LOC398509 protein [Xenopus laevis]
          Length = 188

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 20/177 (11%)

Query: 30  ETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWP 89
           +T+YG+A  ++N  +I  +Y +K R    PL   V ++  + ++  V+ +   L +   P
Sbjct: 1   DTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN-VPDQLLRDLLP 59

Query: 90  GPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQI 146
           GP+TLV++       +++P ++        R+P   F ++L E    PLA+ SAN S Q 
Sbjct: 60  GPVTLVMERSDRLNKELNPFTSL----VGVRIPDHAFIRQLAEVCSEPLALTSANISSQE 115

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIG--------LESTIVNVQCEKKVRILRPG 195
           S   V+      +  ++ L++DGG   IG        L ST+V++    K  ++R G
Sbjct: 116 STLTVEEF--RDLWPKLSLVVDGG--PIGEHSSPECRLGSTVVDLSVPGKFTVIRDG 168


>gi|326382084|ref|ZP_08203777.1| hypothetical protein SCNU_04032 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199510|gb|EGD56691.1| hypothetical protein SCNU_04032 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 219

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYGL  D+ +  A+  L   K R    P+   V     V     SV P +  L
Sbjct: 30  VVMPTDTVYGLGCDAFDSEAVASLLAAKGRGRDMPVPVLVGSWHTVDGLVRSVSPQAREL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L+LV++   +       T+   +   R+P      +L+   G P+A+ SAN 
Sbjct: 90  VQAFWPGGLSLVVEQAPSLAWDLGDTSG--SVMIRMPLHPVAIELLREVG-PMAVSSANI 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG    T         +  ++ + +DGG +   + STIV++   +  +ILR G +  E L
Sbjct: 147 SGHPPATTAPEA-RDQLQDKVSVYLDGGPADHAVASTIVDLTGPEP-KILREGAITAEHL 204

Query: 203 KRAISVELE 211
              + V+ E
Sbjct: 205 AEVLDVDAE 213


>gi|298480264|ref|ZP_06998462.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22]
 gi|298273545|gb|EFI15108.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22]
          Length = 187

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++       +V 
Sbjct: 5   IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     +  + W        PLT++       ++ P   A   +   RV    F+
Sbjct: 59  SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           ++L + +   +   SAN SGQ    N   I
Sbjct: 117 RRLCQQFRKAIVSTSANVSGQSGAANFSEI 146


>gi|91216559|ref|ZP_01253525.1| hypothetical protein P700755_03367 [Psychroflexus torquis ATCC
           700755]
 gi|91185353|gb|EAS71730.1| hypothetical protein P700755_03367 [Psychroflexus torquis ATCC
           700755]
          Length = 189

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L  G  I  PT+TV+G+  D+ N  AI ++Y +K +P    LIC V D  M+ ++   
Sbjct: 13  QILKRGGLILYPTDTVWGIGCDATNAEAIDKIYALKNQPNTKSLICLVPDFKMLNQYVED 72

Query: 77  DPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            P   +    +   P T++      +ST  I    T  ++     V   F K+LI  Y  
Sbjct: 73  IPEVAYDILKYADKPTTIIYQNPIRISTNLIADDDTLGIRV----VDDIFAKELIRKYKR 128

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKVRIL 192
           P+   SAN SGQ +  N   I S  I   +  +++   S K    STI+ +  + KV ++
Sbjct: 129 PIVSTSANISGQPTPANFFEI-SPEILNGVDYVVNLYQSTKNKKPSTIIKLDLDGKVEVI 187

Query: 193 R 193
           R
Sbjct: 188 R 188


>gi|332521229|ref|ZP_08397687.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043322|gb|EGI79519.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 188

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  I  PT+TV+G+  D+ N  A++++Y++K R     LIC V++ SM++KH
Sbjct: 9   EAVTVLKQGGIILYPTDTVWGIGCDATNYNAVKKVYKLKNREESKALICLVNNYSMLEKH 68

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
               P   +        P T++ D  +    + ++  N  T   RV    F + LI+  G
Sbjct: 69  VDNVPNIAYDILDLAINPTTVIYDNPAGVAENLIAEDN--TLAIRVTQDKFCQHLIKYLG 126

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRI 191
            P+   SAN +G  +  + K I   +I K +  +++    K     STI+ +     V+I
Sbjct: 127 KPIVSTSANLAGNPTPKSFKEI-DEAILKGVDYVVNLQTEKRSTNPSTIIKLSNNGNVKI 185

Query: 192 LR 193
           +R
Sbjct: 186 IR 187


>gi|315223600|ref|ZP_07865454.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287]
 gi|314946381|gb|EFS98376.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287]
          Length = 185

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 67/138 (48%), Gaps = 19/138 (13%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  I  PT+TV+GL  D+ NP ++ ++++IK+R     LI  VSD  M++ + + 
Sbjct: 9   EILKAGKIILYPTDTVWGLGCDATNPESVAKIFQIKQRSESKSLIILVSDTEMLQHYVTD 68

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDI---HPLSTAN-----LKTACFRVPCG-FTKKL 127
            P          P  LT +  L   T I   HPL  A        T   RV    F +++
Sbjct: 69  IP----------PKVLTYLQTLQEPTTIIYSHPLHLAKNVIAADNTVAIRVVQDVFCQQM 118

Query: 128 IETYGHPLAIPSANRSGQ 145
           I  +G P+   SAN SG+
Sbjct: 119 IADFGKPIVSTSANISGE 136


>gi|33519687|ref|NP_878519.1| hypothetical protein Bfl220 [Candidatus Blochmannia floridanus]
 gi|81666637|sp|Q7VQB9|RIMN_BLOFL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|33517350|emb|CAD83735.1| putative translation factor (SUA5) [Candidatus Blochmannia
           floridanus]
          Length = 189

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 9/155 (5%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L+ G  I  PTE+V+GL  +  N  AI  L +IK R     LI   ++ + + K+   
Sbjct: 15  EQLNKGKVIVYPTESVFGLGCNPDNENAINTLLKIKCRSWKKGLILVAANYTQLFKYVDD 74

Query: 77  DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETY 131
             L SL L+++F  WPGP T V    S+T +    T    +   RV   F   ++L  T+
Sbjct: 75  RYLNSLQLSRIFSTWPGPFTWVFPARSSTPMW--LTGKFSSVAIRV-SNFEPIRRLCLTF 131

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
           G PL   SAN SG +    + H +   +  + P++
Sbjct: 132 GKPLVSTSANVSGYLPARTI-HAVYKQLGYDFPIM 165


>gi|282600503|ref|ZP_05974542.2| protein RimN [Providencia rustigianii DSM 4541]
 gi|282564965|gb|EFB70500.1| protein RimN [Providencia rustigianii DSM 4541]
          Length = 201

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 6/148 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           ++ M    + A++     L     IA PTE V+GL  D  + TA+ +L E+K+RP    L
Sbjct: 10  LKTMQNQSTPAIKNIINALQQQQVIAYPTEAVFGLGCDPDSETAVNKLLELKQRPWEKGL 69

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I        +K +     L+    +     WPGP+T V+    TT      T    T   
Sbjct: 70  ILIADSYEQLKNYVDDSQLTDQQRQTMFATWPGPVTWVVPAKKTT--PKWLTGKFDTLAV 127

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSG 144
           RV      K+L   YG P+   SAN SG
Sbjct: 128 RVTNHELVKELCSQYGKPIVSTSANLSG 155


>gi|149910322|ref|ZP_01898965.1| Putative Sua5/YciO/YrdC family protein [Moritella sp. PE36]
 gi|149806570|gb|EDM66538.1| Putative Sua5/YciO/YrdC family protein [Moritella sp. PE36]
          Length = 195

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 7/191 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +++ +S A+  A   L     IA PTE V+GL  D  N  A++RL  IK+RP    LI  
Sbjct: 8   ITVNNSAAINNAVAALHTQQVIAYPTEAVFGLGCDPMNELAVQRLLTIKQRPVEKGLILI 67

Query: 64  VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            ++++ +  +  +  LS   +   K  WPGP T V+   +   +    T    +   RV 
Sbjct: 68  AANLAQLNDYVDLTRLSATQIDKIKQTWPGPATWVMP--AKAQVPKWLTGQFDSIAVRVS 125

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              T + L   +G P+   SAN +G         + +S +   +  I+D  + ++   +T
Sbjct: 126 AHPTVQALCLAFGGPITSTSANLTGLTPCITAAEV-ASQLELLLGAIVDEAVGELAQPTT 184

Query: 180 IVNVQCEKKVR 190
           I +    K  R
Sbjct: 185 ITDALTGKIYR 195


>gi|71276454|ref|ZP_00652730.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Dixon]
 gi|71901273|ref|ZP_00683372.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1]
 gi|170731006|ref|YP_001776439.1| hypothetical protein Xfasm12_1935 [Xylella fastidiosa M12]
 gi|71162770|gb|EAO12496.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Dixon]
 gi|71728964|gb|EAO31096.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1]
 gi|167965799|gb|ACA12809.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 209

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 5/190 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S+  +  L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   
Sbjct: 22  SMATTLTLSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVT 81

Query: 65  SDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           ++++ ++    +D LS   LH  +  WPGP T VL   ST   H ++  +   A      
Sbjct: 82  AELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAH 140

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L   +   L   SAN +GQ S    +  L  S+   +  I+DG    +   ++I 
Sbjct: 141 PLVSALCRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIR 199

Query: 182 NVQCEKKVRI 191
           + +    +R+
Sbjct: 200 DARSGHILRL 209


>gi|212693543|ref|ZP_03301671.1| hypothetical protein BACDOR_03060 [Bacteroides dorei DSM 17855]
 gi|237708701|ref|ZP_04539182.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724150|ref|ZP_04554631.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265756027|ref|ZP_06090494.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA]
 gi|212663796|gb|EEB24370.1| hypothetical protein BACDOR_03060 [Bacteroides dorei DSM 17855]
 gi|229437338|gb|EEO47415.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457127|gb|EEO62848.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234105|gb|EEZ19706.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA]
          Length = 204

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L +    L+ G  I  PT+T+Y +        AI R+ ++K   P  N L     D+S +
Sbjct: 15  LEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CG 122
            ++A VD  +  L K   PGP T +L+   T +  P    N K    RVP        C 
Sbjct: 75  SEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNNIIREICH 131

Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             K  I T   PL      + G+ I       ++     KE+ LIIDGGI  I   STIV
Sbjct: 132 ILKAPIMTTTLPL------KDGEDIEYITTPELIEEKFGKEVELIIDGGIGNIE-PSTIV 184

Query: 182 NVQCEKKVRILRPG 195
           N     +  I+R G
Sbjct: 185 NCT-SGEAEIVRQG 197


>gi|224026570|ref|ZP_03644936.1| hypothetical protein BACCOPRO_03327 [Bacteroides coprophilus DSM
           18228]
 gi|224019806|gb|EEF77804.1| hypothetical protein BACCOPRO_03327 [Bacteroides coprophilus DSM
           18228]
          Length = 203

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 13/192 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSD 66
           + +++  + L+ G  I  PT+T+Y +   +     I R+ ++KK   R     +IC+  D
Sbjct: 13  DDIQRVVDILNDGGIIIYPTDTMYAIGCHALKERPIERICKLKKIDPRKHNLSIICY--D 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +S + ++A V+  +  L K   PGP T +L+  S     P    N K    RVP     +
Sbjct: 71  LSNISEYARVNNATFKLMKRCLPGPFTFILNADSRL---PKIFRNRKEVGIRVPDNNIIR 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVK--HILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++  +   P+   +  R     I  V    ++     +E+ L+IDGGI   G+ES+ V  
Sbjct: 128 EICRSLDAPILTTTLPREEHEDIEYVTDPELIDEKFGEEVDLVIDGGIG--GIESSTVID 185

Query: 184 QCEKKVRILRPG 195
            C+ +  I+R G
Sbjct: 186 CCDDEPEIIRQG 197


>gi|25027862|ref|NP_737916.1| hypothetical protein CE1306 [Corynebacterium efficiens YS-314]
 gi|259506253|ref|ZP_05749155.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium efficiens
           YS-314]
 gi|23493145|dbj|BAC18116.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166157|gb|EEW50711.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium efficiens
           YS-314]
          Length = 216

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDI 67
            L+ A + + AG  + +PT+T+YGL  D+ N  A+  L   K R    P   L+     I
Sbjct: 16  GLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNQAVANLLATKHRGPDMPVPVLVGSWDTI 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTK 125
             + +H S    +  L + FWPG L++++    +    P +  + + T   R+P      
Sbjct: 76  QGLVQHYSEQART--LVQAFWPGGLSIIVPQAPSL---PWNLGDTRGTVMLRMPLHPVAI 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L+   G P+A+ SAN SG    + V       + + + + +DGG   IG  S+I+++  
Sbjct: 131 ELLRETG-PMAVSSANISGHTPPSTVTEA-RQQLNQNVSVYLDGGECAIGKPSSIIDISG 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELE 211
               ++LR G +  E +   + V  E
Sbjct: 189 PHP-KLLREGAISAERIGEVLGVTAE 213


>gi|150004545|ref|YP_001299289.1| hypothetical protein BVU_1995 [Bacteroides vulgatus ATCC 8482]
 gi|254882717|ref|ZP_05255427.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643977|ref|ZP_07998552.1| hypothetical protein HMPREF9011_04155 [Bacteroides sp. 3_1_40A]
 gi|149932969|gb|ABR39667.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254835510|gb|EET15819.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384501|gb|EFV65468.1| hypothetical protein HMPREF9011_04155 [Bacteroides sp. 3_1_40A]
          Length = 204

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L +    L+ G  I  PT+T+Y +        AI R+ ++K   P  N L     D+S +
Sbjct: 15  LEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CG 122
            ++A VD  +  L K   PGP T +L+   T +  P    N K    RVP        C 
Sbjct: 75  SEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNNIIREICH 131

Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             K  I T   PL      + G+ I       ++     KE+ LIIDGGI  I   STIV
Sbjct: 132 ILKAPIMTTTLPL------KDGEDIEYITTPELIEEKFGKEVELIIDGGIGSIE-PSTIV 184

Query: 182 NVQCEKKVRILRPG 195
           N     +  I+R G
Sbjct: 185 NCT-NGEAEIVRQG 197


>gi|94987331|ref|YP_595264.1| hypothetical protein LI0889 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731580|emb|CAJ54943.1| conserved hypothetical protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 210

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVD-SRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +L++A  F++ G  I  PTET +GL      N   I++++  K+R    PL   + +   
Sbjct: 6   SLKEAVNFINQGKLIIFPTETFFGLGCKIFNNEDTIQQIFIAKQRAINMPLPLIIGNWEQ 65

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   A V  +   L + FWPG L++VL+  +  +I P  TA+ +    R+      K++ 
Sbjct: 66  LTITAEVPQIIYPLLQHFWPGALSIVLN--AKKNISPYITASTQKVAVRLSSHPIAKEIA 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEK 187
           +  G P+   SAN +    +T +   L   +   I  IID   I   GL ST++ +    
Sbjct: 124 DLVGEPIIATSANINKNPPVTKITQ-LDIRLYPYIEGIIDIPPIPTGGLPSTLIELHPNN 182

Query: 188 KVRILRPG 195
            + ILR G
Sbjct: 183 TISILREG 190


>gi|92114981|ref|YP_574909.1| SUA5/yciO/yrdC-like protein [Chromohalobacter salexigens DSM 3043]
 gi|122419275|sp|Q1QTJ8|RIMN_CHRSD RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|91798071|gb|ABE60210.1| translation factor SUA5 [Chromohalobacter salexigens DSM 3043]
          Length = 185

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ +  A   L  G  +A PTE V+GL  D  +  A+ RL  +K+R     LI    D+ 
Sbjct: 5   ADRIADAVAALRRGALLAYPTEAVWGLGCDPDDDAALARLIALKQRDPAKGLILIAGDMD 64

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++   A +D L        WPGP T ++         PL      +   RV      ++
Sbjct: 65  QLEPWLAGLDALQRARLAESWPGPNTWLVP--DNGRARPLLRGEHTSLAVRVSDHPLVRQ 122

Query: 127 LIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           L   +G PL   SANR+G+   +S  +V+     ++      ++DG +      STI ++
Sbjct: 123 LCAAFGGPLVSSSANRAGEPPAMSAADVRAAFGEAVT-----LLDGALGGYARPSTIRDL 177

Query: 184 QCEKKVR 190
           Q  + +R
Sbjct: 178 QSGETLR 184


>gi|312129970|ref|YP_003997310.1| translation factor sua5 [Leadbetterella byssophila DSM 17132]
 gi|311906516|gb|ADQ16957.1| translation factor SUA5 [Leadbetterella byssophila DSM 17132]
          Length = 205

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 9/192 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNP--LICHV 64
           D   +++  E L  G  I  PT+TVY +  +S +  A+ +L +IK  +P  N   ++CH 
Sbjct: 14  DMRKIKQVVECLMDGGIIIYPTDTVYSMGCNSYHNKAVEKLCKIKGIKPNQNKFSIVCH- 72

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+S +  +A V   +    K + PGP T +L   ST ++  L   + KT   RVP    
Sbjct: 73  -DLSDIATYAKVSNEAFRTMKQYLPGPYTFILP--STNELPKLLQTSRKTIGIRVPDHMI 129

Query: 125 -KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + LI+  G P+   S          N   ++         +IIDGG   I + STIV+ 
Sbjct: 130 PQTLIKELGRPIITTSVKYDDIREYPNEIEVIYEENMYLADIIIDGGWCGI-VPSTIVDC 188

Query: 184 QCEKKVRILRPG 195
                  ++R G
Sbjct: 189 TDPDHFEVIREG 200


>gi|319441090|ref|ZP_07990246.1| hypothetical protein CvarD4_04907 [Corynebacterium variabile DSM
           44702]
          Length = 218

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 15/193 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           I +PT+TVYG+  D+ +  A+  L   K R    P    V     V       D     L
Sbjct: 30  IVMPTDTVYGIGADAFDNDAVAALLVAKHRGPDYPTPVVVGSWDTVTGLVRDADARMKAL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSAN 141
            + FWPG LT+V     +    P +  + + T   R+P      +L++  G P+A+ SAN
Sbjct: 90  VEAFWPGGLTIVTHQAPSL---PWNLGDTRGTVALRMPLHPVAIELLQQTG-PMALSSAN 145

Query: 142 RSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
             GQ   +S    +  L  S+     + +DGG + IG  STIV++   ++ RILR G +E
Sbjct: 146 VHGQPSALSAAQAREQLGDSVS----VYLDGGPATIGTSSTIVDLSG-RRPRILRHGAIE 200

Query: 199 IETLKRAISVELE 211
              +   + V  E
Sbjct: 201 AARVAEVLGVPEE 213


>gi|269128125|ref|YP_003301495.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM
           43183]
 gi|268313083|gb|ACY99457.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM
           43183]
          Length = 216

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 7/182 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVDPLSLHL 83
           + +PT+TVYG+   +  P A+  L + K R    P    + S  ++        P    L
Sbjct: 30  VVLPTDTVYGVGCGAFLPDAVDALLKAKGRGRQMPAPVLIGSPEALADLVTDTGPYGPAL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG LTLV   +       L  A   T   R+P      +L+   G P+A+ SAN 
Sbjct: 90  IEEFWPGALTLVFPAVPGL-ARVLGDAQ-GTVAVRMPRDELALELLREAG-PMAVSSANL 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           +G+ +         + + + + + +DGG + +G  S+IV++  ++  R+LR G L  ETL
Sbjct: 147 TGRPAARTAGEAF-AQLGESVAVYLDGGPAPLGEPSSIVDLSGDEP-RLLRAGALAAETL 204

Query: 203 KR 204
           +R
Sbjct: 205 RR 206


>gi|72162816|ref|YP_290473.1| translation factor SUA5 [Thermobifida fusca YX]
 gi|71916548|gb|AAZ56450.1| translation factor SUA5 [Thermobifida fusca YX]
          Length = 259

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 13/184 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82
           + +PT+TVYG+  D+ NP A+  L   K+R   +P    V  +   +  A +D L  +  
Sbjct: 30  VVLPTDTVYGVGADAFNPAAVTALRNAKQRGREHPPAVLVGTVRAAQ--ALIDDLGKYGQ 87

Query: 83  -LAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPC-GFTKKLIETYGHPLAIPS 139
            L + FWPGPLTLV    + T        + K T   R+P      +L++  G P+A+  
Sbjct: 88  DLIEEFWPGPLTLV---CAATPSLSWDLGDTKGTVAVRMPMHPVALELLKEVG-PMAVSG 143

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN +G+ + T V+    +     + + +D G       STIV++      R+LR G + +
Sbjct: 144 ANVTGKPAATTVEEA-ETQFGDAVSVYLDAGPCTSTPPSTIVDLTYAVP-RVLRSGAITL 201

Query: 200 ETLK 203
           E L+
Sbjct: 202 EQLR 205


>gi|86147122|ref|ZP_01065438.1| Sua5/YciO/YrdC family protein [Vibrio sp. MED222]
 gi|85835006|gb|EAQ53148.1| Sua5/YciO/YrdC family protein [Vibrio sp. MED222]
          Length = 185

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +  +   + L  G  IA PTE V+G+  D  NP AI++L ++K+RP    LI   +    
Sbjct: 2   DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPMEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L   K  WPGP+T ++   +++ +    +   ++   RV      +
Sbjct: 62  LLPYIDESQLTEAQLATVKATWPGPVTWIMP--TSSKVTDWVSGQFESIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   +G PL   SAN +G+      + +    + + +  I++G   + G       ++ 
Sbjct: 120 RMCNEFGKPLTSTSANLTGESPCMTTEEV-QQQLGQHLVAILEG---QTGGREKPSEIRD 175

Query: 186 EKKVRILRPG 195
            K  +ILR G
Sbjct: 176 AKTSKILRQG 185


>gi|33239812|ref|NP_874754.1| putative translation factor (SUA5) [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237338|gb|AAP99406.1| Putative translation factor (SUA5) [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 195

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 16/191 (8%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  ++LD G P+ IPT+T+  LA   +N  AI  L+ IKKRP   PLI   S    + K
Sbjct: 9   KELLQYLDKGSPVLIPTDTLPALATFPKN--AI-ELWNIKKRPKSKPLILMGSTTDQLLK 65

Query: 73  HASVDPL----SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +  V P+    ++ +   +WPG LT+VL   ++ +I      +  +   R+P C  +   
Sbjct: 66  Y--VLPVAIKDAIRMCSSYWPGALTIVLP--ASGEIVQSLNPSGDSIGIRIPACEVSMDF 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCE 186
           +   G PLA  SAN SGQ ++ +   +  S    ++PL+      +  GL ST++  +  
Sbjct: 122 LNKSG-PLATTSANLSGQETLIDPYEL--SQCFPKLPLLSPVPWPTSSGLASTLIKWKSP 178

Query: 187 KKVRILRPGGL 197
            K ++LR G +
Sbjct: 179 GKWQLLRRGAV 189


>gi|19552426|ref|NP_600428.1| putative translation factor (SUA5) [Corynebacterium glutamicum ATCC
           13032]
 gi|62390090|ref|YP_225492.1| translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032]
 gi|21323969|dbj|BAB98595.1| Putative translation factor (SUA5) [Corynebacterium glutamicum ATCC
           13032]
 gi|41325426|emb|CAF19906.1| Putative translation factor (SUA5) [Corynebacterium glutamicum ATCC
           13032]
          Length = 216

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 11/209 (5%)

Query: 8   DSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           DS A  L+ A + + AG  + +PT+T+YGL  D+ N  A+  L   K R    P+   V 
Sbjct: 11  DSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPDMPVPVLVG 70

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG- 122
               ++    S    +  L + FWPG L++++    +    P +  + + T   R+P   
Sbjct: 71  SWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSL---PWNLGDTRGTVMLRMPLHP 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              +L+   G P+A+ SAN SG    T V       + + + + +DGG   +   STIV+
Sbjct: 128 VAIELLRQTG-PMAVSSANISGHTPPTTVLEA-RQQLNQNVAVYLDGGECALATPSTIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211
           +      +ILR G +  E +   + V  E
Sbjct: 186 ISGPAP-KILREGAISAERVGEVLGVSAE 213


>gi|302542526|ref|ZP_07294868.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460144|gb|EFL23237.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 215

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 25/208 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+TVYG+  D+ +  A+  L E K R    P    V   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLEAKGRGRNMPTPVLVGSPNT 74

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG 122
           +  H  V   S     L   FWPG LTLV          P  T +L     T   R+P  
Sbjct: 75  L--HGLVTDFSEQAWELVDAFWPGALTLV------ARHQPSLTWDLGETRGTVAVRMPLH 126

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLES 178
               +L+  +G P+A+ SAN +G  S  +    + +L  S+     + +DGG +   + S
Sbjct: 127 PVAIELLNDFG-PMAVSSANLTGHPSPQDCDAAQDMLGDSVS----VYLDGGPTPAAVPS 181

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206
           +IV+V  +  V +LR G L  E L+  +
Sbjct: 182 SIVDVTGKVPV-LLRAGALSAEQLREVV 208


>gi|262392839|ref|YP_003284693.1| YrdC family protein [Vibrio sp. Ex25]
 gi|262336433|gb|ACY50228.1| YrdC family protein [Vibrio sp. Ex25]
          Length = 185

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 10/181 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---AS 75
           L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    +  +   + 
Sbjct: 11  LQQGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLPYIDESQ 70

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           + P  L      WPGP T ++   ++  +    +    +   RV      +K+   +G P
Sbjct: 71  LTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L   SAN SG     N + +    +  ++  I+ G  S     S I +    K  +ILR 
Sbjct: 129 LTSTSANLSGLPPCMNTEEV-EQQLGDKLVAILRGETSGRDKPSEIRDA---KTSQILRQ 184

Query: 195 G 195
           G
Sbjct: 185 G 185


>gi|332293598|ref|YP_004432207.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171684|gb|AEE20939.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 186

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 23/190 (12%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  I  PT+TV+G+  D+ NP A+ ++Y +KKR     LIC VSD  M+ ++ 
Sbjct: 8   ALAVLKRGGLILYPTDTVWGIGCDATNPDAVDKVYALKKRAESKSLICLVSDFKMLNQYI 67

Query: 75  SVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
              P   +    +   P T++ D    ++T  I P ++   +  C    C F   L++ +
Sbjct: 68  ENIPEVAYDILKYAAKPTTIIYDDPIRIATNVIAPDNSTAFR-VCRNQFCNF---LLKKF 123

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--------STIVNV 183
             P+   SAN +G+ +  +      S I +E   IIDG    + L+        S I+ +
Sbjct: 124 RKPIVSTSANITGKPTPQSF-----SEISQE---IIDGVDYVVNLDRDRTSTKPSAIIKL 175

Query: 184 QCEKKVRILR 193
             + KV I+R
Sbjct: 176 TEDGKVTIIR 185


>gi|50122916|ref|YP_052083.1| putative DNA topoisomerase [Pectobacterium atrosepticum SCRI1043]
 gi|49613442|emb|CAG76893.1| putative DNA topoisomerase [Pectobacterium atrosepticum SCRI1043]
          Length = 372

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 10/127 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   ++ S +  + +   LS    
Sbjct: 205 IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAANFSQLVPYINDSALSDEQK 264

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138
           A +F  WPGP+T VL    TT      T    +   RV   P    K+L + YG PL   
Sbjct: 265 AMMFSTWPGPVTWVLPAKPTTP--QWLTGQFSSLAVRVSDHP--LVKELCQHYGKPLVST 320

Query: 139 SANRSGQ 145
           SAN SGQ
Sbjct: 321 SANLSGQ 327


>gi|148978490|ref|ZP_01814964.1| Sua5/YciO/YrdC family protein [Vibrionales bacterium SWAT-3]
 gi|145962397|gb|EDK27677.1| Sua5/YciO/YrdC family protein [Vibrionales bacterium SWAT-3]
          Length = 185

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +  +   + L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2   DNFQHTLQALHQGEVIAYPTEGVFGVGCDPDNPHAIKKLLELKQRPVEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L   K  WPGP+T ++   ++  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLTDEQLATVKATWPGPVTWIMP--TSAKVTDWVSGQFDSLAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   +G PL   SAN +G+      + +    + + +  I++G   K G       ++ 
Sbjct: 120 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEG---KTGGRDKPSEIRD 175

Query: 186 EKKVRILRPG 195
            K  +ILR G
Sbjct: 176 AKTSKILRQG 185


>gi|256390409|ref|YP_003111973.1| Sua5/YciO/YrdC/YwlC family protein [Catenulispora acidiphila DSM
           44928]
 gi|256356635|gb|ACU70132.1| Sua5/YciO/YrdC/YwlC family protein [Catenulispora acidiphila DSM
           44928]
          Length = 216

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 20/204 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSDIS 68
             LR+A   +  G  + +PT+T+YG+  D+    A+R L E K R PAM   +   S  +
Sbjct: 15  TGLREAASAVRRGELVVLPTDTLYGIGADAFTNWAVRALLEAKGRGPAMPSPVLVPSPAT 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANL----KTACFRVPCGF 123
           +    A +  +   L   FWPG LT+V        +H P  T +L     T   R+P   
Sbjct: 75  LHGLVAGMPSVGWELVDAFWPGGLTIVA-------MHQPTLTWDLGETRGTVAVRMPLHP 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---STI 180
               + T   P+A+ SAN++G  +           +   + + +D G  K+G E   S+I
Sbjct: 128 VAIELLTETGPMAVSSANKTGMAAAQTAVDA-QDQLGDAVSVYLDAG--KVGGEGGASSI 184

Query: 181 VNVQCEKKVRILRPGGLEIETLKR 204
           V+V     V +LR G L  + L+ 
Sbjct: 185 VDVTGTAPV-LLREGALTFDQLRE 207


>gi|312137347|ref|YP_004004684.1| translation factor sua5 [Methanothermus fervidus DSM 2088]
 gi|311225066|gb|ADP77922.1| translation factor SUA5 [Methanothermus fervidus DSM 2088]
          Length = 196

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 12/181 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    L  G  I  PT+T+YGL  ++ +  AI+++Y IKKR    P+   V ++ 
Sbjct: 13  TKVLNKVRRMLAEGKVIIYPTDTLYGLGANAFDEDAIKKVYSIKKRSFDKPISICVPNMR 72

Query: 69  MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTK 125
            ++K A + D     ++KL  PGP T++L+     DI P + TA  K    R+P    + 
Sbjct: 73  WIRKVAYLNDKQKEKISKLL-PGPYTIILE---KKDIIPDVLTAGKKKVGIRIPKSKISI 128

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L + +  P+   SAN SG+ +   VK I+     K + L ID G  + G  ST+++   
Sbjct: 129 ELAKEF--PITATSANISGRETPPTVKEIIKQ--LKNVDLAIDVGPLR-GEPSTVIDFTT 183

Query: 186 E 186
           +
Sbjct: 184 D 184


>gi|212288257|sp|B0U4N0|RIMN_XYLFM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 187

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 5/183 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 7   LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
               +D LS   LH  +  WPGP T VL   ST   H ++  +   A           L 
Sbjct: 67  DWLDLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAHPLVSALC 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +   L   SAN +GQ S    +  L  S+   +  I+DG    +   ++I + +    
Sbjct: 126 RAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHI 184

Query: 189 VRI 191
           +R+
Sbjct: 185 LRL 187


>gi|227115514|ref|ZP_03829170.1| putative DNA topoisomerase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 189

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D S +  +     LS    
Sbjct: 22  IAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLAPYIDDSALSDEQK 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPGP+T VL    TT      T    +   RV      K+L   YG PL   SA
Sbjct: 82  AVMFSTWPGPVTWVLPAKRTT--PQWLTGQFSSLAVRVSDHPLVKELCLRYGKPLVSTSA 139

Query: 141 NRSGQISITNVKHILSSSICKEIPLII 167
           N SG+      + + S     + P+++
Sbjct: 140 NLSGKPPCRTAQEV-SLQFGDDFPVLV 165


>gi|189461153|ref|ZP_03009938.1| hypothetical protein BACCOP_01800 [Bacteroides coprocola DSM 17136]
 gi|189432132|gb|EDV01117.1| hypothetical protein BACCOP_01800 [Bacteroides coprocola DSM 17136]
          Length = 203

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 17/197 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVS 65
            DS+ L+   + L+ G  I  PT+T+Y +   +     I R+ ++K   P  N L     
Sbjct: 10  NDSDVLQHIVDILNDGGIIIYPTDTMYAMGCHALKERPIERICKLKNIDPRKNNLSIICC 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+S + ++A V   +  L K   PGP T VL+  S     P    N K    RVP     
Sbjct: 70  DLSNISEYARVSNATFKLMKRNLPGPFTFVLNADSRL---PKIFRNRKEVGIRVP---DN 123

Query: 126 KLIETYGHPLAIP------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-S 178
            +I    H L  P        N    +       ++      E+ L+IDGGI   G+E S
Sbjct: 124 NIIREICHLLDAPILTTTLPLNPDEDVEYVTDPELIDEKFGSEVDLVIDGGIG--GVEPS 181

Query: 179 TIVNVQCEKKVRILRPG 195
           T++N  CE    I+R G
Sbjct: 182 TVINC-CEDVPEIIRQG 197


>gi|84393448|ref|ZP_00992205.1| Sua5/YciO/YrdC family protein [Vibrio splendidus 12B01]
 gi|84375964|gb|EAP92854.1| Sua5/YciO/YrdC family protein [Vibrio splendidus 12B01]
          Length = 185

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +  +   + L  G  IA PTE V+G+  D  NP AI++L ++K+RP    LI   +    
Sbjct: 2   DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPMEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L   K  WPGP+T ++   +++ +    +   ++   RV      +
Sbjct: 62  LLPYIDESQLTEAQLATVKATWPGPVTWIMP--TSSKVTDWVSGQFESIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   +G PL   SAN +G+      + +    + + +  I++G   + G       ++ 
Sbjct: 120 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEG---QTGGREKPSEIRD 175

Query: 186 EKKVRILRPG 195
            K  +ILR G
Sbjct: 176 AKTSKILRQG 185


>gi|163803308|ref|ZP_02197186.1| Sua5/YciO/YrdC family protein [Vibrio sp. AND4]
 gi|159172878|gb|EDP57717.1| Sua5/YciO/YrdC family protein [Vibrio sp. AND4]
          Length = 185

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
             K  E L  G  IA PTE V+G+  D  NP AI++L  +K+RP    LI   +    + 
Sbjct: 4   FEKVLEALQNGEVIAYPTEGVFGVGCDPDNPAAIQKLLALKQRPVEKGLILIAASYEQLM 63

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +     L+   L      WPGP T V+   ++  +    +    +   RV      +K+
Sbjct: 64  PYIDESQLTQEQLDKVHATWPGPFTWVMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKM 121

Query: 128 IETYGHPLAIPSANRSGQ 145
              +G PL   SAN +GQ
Sbjct: 122 CHAFGKPLTSTSANLTGQ 139


>gi|183219444|ref|YP_001837440.1| hypothetical protein LEPBI_I0017 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909589|ref|YP_001961144.1| SUA5 family translation factor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774265|gb|ABZ92566.1| Translation factor, SUA5 family [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777866|gb|ABZ96164.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 210

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 7/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++  + L  G     PT+TVY +  D+ + TA+ ++Y IKK P   PL     DISM  
Sbjct: 15  LKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKDKPLSLLCRDISMAS 74

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P S +   K   PGP T VL          ++    K    R+P   + ++L++
Sbjct: 75  HFIEYLPNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIGIRIPDHIYLQELLK 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +  PL   SA              L S     +  IIDGGI KI L ST++ +  +  +
Sbjct: 135 IHDSPLTSTSA--FSDDEFIIDIDDLESIYGNLVDGIIDGGIVKIEL-STMIQIH-DDSL 190

Query: 190 RILRPG-GLEI 199
            ++R G G E+
Sbjct: 191 ELIRAGKGYEL 201


>gi|237714415|ref|ZP_04544896.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408246|ref|ZP_06084793.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643621|ref|ZP_06721424.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a]
 gi|294806130|ref|ZP_06764982.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|229445579|gb|EEO51370.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353798|gb|EEZ02891.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641055|gb|EFF59270.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a]
 gi|294446644|gb|EFG15259.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC
           1b]
          Length = 187

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++       +V 
Sbjct: 5   IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     +  + W        PLT++       ++ P   A   +   RV    F+
Sbjct: 59  SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           ++L + +   +   SAN SGQ    N   I
Sbjct: 117 RRLCQQFRKAIVSTSANVSGQPGAANFSEI 146


>gi|317479725|ref|ZP_07938847.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36]
 gi|316904095|gb|EFV25927.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36]
          Length = 197

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++       +V 
Sbjct: 15  IKKACQVMSEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLV------LVD 68

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     + ++ W        PLT++       ++ P   A   +   RV    F+
Sbjct: 69  SPVKVDFYVQDVPEVAWDLIELADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTSEAFS 126

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           K+L + +   +   SAN SGQ S  N   I
Sbjct: 127 KRLCQQFRKAIVSTSANVSGQPSPGNFSEI 156


>gi|88705951|ref|ZP_01103659.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71]
 gi|88699665|gb|EAQ96776.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71]
          Length = 208

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + +  G  I  PT++ Y L     +  A+ R+  I+K    +       D+S + 
Sbjct: 17  VRQAADIVRGGGVIVYPTDSAYALGCHIGDKGALDRIRRIRKLDDRHNFTLVCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD     L K   PGP T +  L +TT++   L  A  KT   RVP    T+ L+ 
Sbjct: 77  TYARVDNSVYRLLKQHTPGPYTFI--LRATTEVPRRLMQAKRKTVGLRVPENAITQALLG 134

Query: 130 TYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             G PL   S    G     I    ++ +L      E+ L+IDGG    G+E+T V    
Sbjct: 135 DLGEPLMSVSLIMPGDELPLIDPYEIRELLE----HEVDLVIDGGYC--GMEATTVVDLA 188

Query: 186 EKKVRILRPG 195
           +++  +LR G
Sbjct: 189 DEEPMVLRAG 198


>gi|329960182|ref|ZP_08298624.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides fluxus YIT 12057]
 gi|328532855|gb|EGF59632.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides fluxus YIT 12057]
          Length = 187

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++       +V 
Sbjct: 5   IKKACQVMREGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
             A VD     + ++ W        PLT++       ++ P   A   +   RV    F+
Sbjct: 59  STAKVDFYVEDVPEIAWDLIDVTDKPLTIIYS--GARNLAPNLLAEDGSVGIRVTDEEFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           K+L + +   +   SAN SGQ S  N   I
Sbjct: 117 KRLCQQFRKAIVSTSANISGQPSPGNFSEI 146


>gi|304314044|ref|YP_003849191.1| Sua5-related protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587503|gb|ADL57878.1| Sua5-related protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 207

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 9/196 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +A   ++ G  +  PT+T+YGL V++ +  ++R+L+ IK R    P+   VS +S 
Sbjct: 14  KVIDEAISVMERGGAVIYPTDTIYGLGVNALDGESVRKLFRIKGRAPDKPVSICVSGVSE 73

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLI 128
           + + +     ++ + +   PGP T+   LL   D+ P + T        RVP     + I
Sbjct: 74  IPRFSKPSEHAMEVIRRILPGPYTV---LLEKKDLVPDILTGGSSKVGVRVPDDEVCRRI 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                P+   SAN SG+    N   I+      E+ L++D G       ST+V++  E  
Sbjct: 131 SAR-FPVTATSANISGKQPSANPHDIMGD---LEVDLMLDAGECDSTEPSTVVDLTVEPP 186

Query: 189 VRILRPGGLEIETLKR 204
             +LR G  + E + R
Sbjct: 187 A-VLRMGRGDPEVIHR 201


>gi|260906198|ref|ZP_05914520.1| hypothetical protein BlinB_12795 [Brevibacterium linens BL2]
          Length = 216

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 7/184 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLHL 83
           + IPT+TVYG+A D+ + +A+  L   K R   M P +      ++      VD   L L
Sbjct: 30  LVIPTDTVYGIAADAFSASAVSALLAAKGRGRDMPPPVLVPRAETVFGLVDGVDEKLLAL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              FWPGPLT++ +   + D     T    T   R+P   +   L+   G PLA+ SAN 
Sbjct: 90  TARFWPGPLTIIANAQPSLDWDLGDTHG--TVAVRMPDDEYALALLGRTG-PLAVSSANV 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG  + T+    +   +  ++ + +DGG+ + G+ STIV++  +   +I+R G +  + L
Sbjct: 147 SGSPAATSADEAM-EMLGDDVDIYVDGGVRESGISSTIVDLTGDVP-KIVREGPVTSDEL 204

Query: 203 KRAI 206
           +  +
Sbjct: 205 REIV 208


>gi|332298150|ref|YP_004440072.1| SUA5/yciO/yrdC domain protein [Treponema brennaborense DSM 12168]
 gi|332181253|gb|AEE16941.1| SUA5/yciO/yrdC domain protein [Treponema brennaborense DSM 12168]
          Length = 193

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 23/199 (11%)

Query: 12  LRKACEFLDA-------GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           L+K  E  DA       G  + IPT+TVYG +     P A   +  IK R    P I  +
Sbjct: 4   LKKEAESADAVVRALRGGHVVIIPTDTVYGFS--GIVPVADAEIRAIKGRSETKPFIRLI 61

Query: 65  SDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           S    V  +     P SL+     WPG LTL++ L ++    P      +TA FR P   
Sbjct: 62  SSPEAVFAYTDDSIPDSLYA---LWPGALTLIVTLNASCASFP-----GETAAFRCPGDE 113

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTI 180
           + +++I   G P+   S NRSGQ  + +V   + +   +E+ LI+D    + +  L ST+
Sbjct: 114 WLRQVIAGCGAPVYSTSVNRSGQPLLRSVAE-MDAEFGREVALIVDAQDSLPQDALPSTL 172

Query: 181 VNVQCEKKVRILRPGGLEI 199
           VN+       +LR G + +
Sbjct: 173 VNIS-GGTYTVLRQGSVAV 190


>gi|295676914|ref|YP_003605438.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002]
 gi|295436757|gb|ADG15927.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002]
          Length = 211

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S + 
Sbjct: 17  VKQAAQIINDGGVVALPTDSTYALACRLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   +S  + KT   RVP    T  ++E
Sbjct: 77  NFAMVDNWQYRLLKSVTPGPYVFVLQ--ATKEVPRRVSHPSRKTIGLRVPDHAITLAILE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+    N    + + + K++ L+IDGG + +   ST++++   + V
Sbjct: 135 ELGQPLLGTTLIMPGETEPLNDPEEIRARLEKQLDLVIDGG-ACVCEPSTVIDLTGSEPV 193

Query: 190 RI------LRPGGLE 198
            +      L P GLE
Sbjct: 194 LVRAGRGQLEPFGLE 208


>gi|148241524|ref|YP_001226681.1| translation factor [Synechococcus sp. RCC307]
 gi|147849834|emb|CAK27328.1| Possible translation factor [Synechococcus sp. RCC307]
          Length = 195

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 16/183 (8%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G P   PT+T+  LA     P+A + ++++K+RPA  PLI   + +  +      +P
Sbjct: 13  LQQGEPALFPTDTLPALAAI---PSAAQAIWQLKQRPADKPLILMGASVEQLLPCLGQEP 69

Query: 79  LS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC---FRVP-CGFTKKLIETYG 132
            +    LA+L WPG LTLVL          +   N +  C    RVP C    +L+   G
Sbjct: 70  PAGWQRLAELGWPGALTLVLPACGPV----VEALNPEGGCSLGLRVPACEAALQLLRCSG 125

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PLA  SANRSG+ +       L+    + I L  +  +   G  ST+V+ Q +   R+L
Sbjct: 126 -PLATSSANRSGEPACRTAAE-LAHCFPEVIRLAPEPWLPGSGQASTVVSWQSDGW-RVL 182

Query: 193 RPG 195
           R G
Sbjct: 183 RQG 185


>gi|288922984|ref|ZP_06417141.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EUN1f]
 gi|288345660|gb|EFC80032.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EUN1f]
          Length = 217

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 5/183 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+T+YG+  D+ +P A+  L   K R    P+   V     +      V      L
Sbjct: 30  VVLPTDTLYGIGADAFDPVAVGCLLGAKGRGRDMPVPVLVGSWRTLDGLVEQVTDQVRDL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
            + FWPG LTLV++   +     L  A   T   R+P       + T   P+A+ SAN S
Sbjct: 90  VRAFWPGGLTLVVNHAPSLSWD-LGDAR-GTVAVRMPLHPVAIELLTRTGPMAVSSANIS 147

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+   T  +  L + +   + + +DGG + +G  STI++      V ++R G ++IE L+
Sbjct: 148 GRPPATTAQDAL-AQLGGAVDVYLDGGRTPVGKASTILDCTGTVPV-VVREGAVDIEALR 205

Query: 204 RAI 206
             +
Sbjct: 206 SVV 208


>gi|160890843|ref|ZP_02071846.1| hypothetical protein BACUNI_03288 [Bacteroides uniformis ATCC 8492]
 gi|270295850|ref|ZP_06202050.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20]
 gi|156859842|gb|EDO53273.1| hypothetical protein BACUNI_03288 [Bacteroides uniformis ATCC 8492]
 gi|270273254|gb|EFA19116.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20]
          Length = 187

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++       +V 
Sbjct: 5   IKKACQVMSEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     + ++ W        PLT++       ++ P   A   +   RV    F+
Sbjct: 59  SPVKVDFYVQDVPEVAWDLIELADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTSEAFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           K+L + +   +   SAN SGQ S  N   I
Sbjct: 117 KRLCQQFRKAIVSTSANVSGQPSPGNFSEI 146


>gi|257069073|ref|YP_003155328.1| Sua5/YciO/YrdC/YwlC family protein [Brachybacterium faecium DSM
           4810]
 gi|256559891|gb|ACU85738.1| Sua5/YciO/YrdC/YwlC family protein [Brachybacterium faecium DSM
           4810]
          Length = 347

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 15/184 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           I +PT+TVYG+  D+  P A++ L E K R    P    + D +++   A+  P  +  L
Sbjct: 29  IVLPTDTVYGIGADAFTPEAVQALLEAKGRGRDTPPPVLIGDHAVLLALATDVPDYIEDL 88

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTK-KLIETYGHPLAIP 138
            +  WPG LT++L         P  T +L     +   R+P      +L+   G PLA+ 
Sbjct: 89  TEELWPGALTVIL------TAQPSLTWDLGETRGSVALRMPEDEVALELLRRTG-PLAVS 141

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SANR G+ +  +V    ++ +   + + +DGG +++G  STI++        I+R G + 
Sbjct: 142 SANRHGRPAAQSVLDA-ATQLGDSVEIYLDGGPARLGESSTILDATVTPP-EIVREGAIT 199

Query: 199 IETL 202
            E +
Sbjct: 200 KEQI 203


>gi|229816322|ref|ZP_04446629.1| hypothetical protein COLINT_03372 [Collinsella intestinalis DSM
           13280]
 gi|229808078|gb|EEP43873.1| hypothetical protein COLINT_03372 [Collinsella intestinalis DSM
           13280]
          Length = 214

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 16/204 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---------DSRNP-TAIRRLYEIKKRPAMNPLI 61
           L  A + L AG    +PTETVYG+ V         ++  P T   R++ +K+R     + 
Sbjct: 11  LGPAADCLTAGGLALVPTETVYGVGVAISAFAANLETPGPDTGYGRIFTLKQRELTQTVP 70

Query: 62  CHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             V   + ++++    P S+  LA+  WPG LTLV+   +  D+     A   T   R  
Sbjct: 71  WLVDGPAALERYGKDVPHSICALAEKLWPGALTLVVP--AADDVPSFMRAADGTVALRAS 128

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LI   G PLA+ SAN  G+ +  +   +    I   + + +D G +     ST
Sbjct: 129 ASPVVQELIARCGSPLAVTSANTHGKPAPISFDEV-EPRILAGVDVAVDAGETPCRDAST 187

Query: 180 IVNVQCEKKVRILRPGGLEIETLK 203
           IV V+ + +++ILR G L +  ++
Sbjct: 188 IVAVR-DGELQILREGALAVREIR 210


>gi|167621974|ref|YP_001672268.1| SUA5/yciO/yrdC domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|212288222|sp|B0TLD6|RIMN_SHEHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|167351996|gb|ABZ74609.1| SUA5/yciO/yrdC domain [Shewanella halifaxensis HAW-EB4]
          Length = 187

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 77/185 (41%), Gaps = 19/185 (10%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            E ++ G  IA PTE VYGL  D  N  AI RL EIK RP    LI    D   +  +  
Sbjct: 10  AELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYID 69

Query: 76  VDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
              LS   L      WPGP T ++ +     +  L + +  +   RV      K L    
Sbjct: 70  ESQLSAEQLAFVHSKWPGPFTFIMPV--KPGLSNLLSGSFDSIAVRVTAHEGVKALCAAI 127

Query: 132 GHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLE---STIVNVQC 185
             P+   SAN +GQ   +S   VK      I   +       I  +G++   STI++ + 
Sbjct: 128 NKPIVSTSANLTGQDPALSGAAVKQQFEGIIAGLV-------IGDLGIQASPSTIIDAKS 180

Query: 186 EKKVR 190
            + +R
Sbjct: 181 GQVIR 185


>gi|312796685|ref|YP_004029607.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI
           454]
 gi|312168460|emb|CBW75463.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI
           454]
          Length = 209

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 11/194 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +D G  +A+PT++ Y LA    +  A+ +L  I+       L   V D+S + 
Sbjct: 17  IKQAAQIIDGGGVVALPTDSSYALACHLDDKAAVEQLRRIRGLNERRHLSLMVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  TFAMVDNRQYRLIKAVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   +    G     N    + + + K++ L+IDGG       ST++++  +  V
Sbjct: 135 ALGQPVIASTLILPGDDEPLNEPEAIRAQLEKQLDLVIDGGACA-AEPSTVIDLSGDAPV 193

Query: 190 RI------LRPGGL 197
            +      L P GL
Sbjct: 194 LVRVGRGPLEPFGL 207


>gi|149278400|ref|ZP_01884537.1| translation factor [Pedobacter sp. BAL39]
 gi|149230770|gb|EDM36152.1| translation factor [Pedobacter sp. BAL39]
          Length = 250

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 10/166 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLICHVSDI 67
           A+ +A E L  G  I  PT+TVYGL  D  N  AI R+     IK   A    +C  SD+
Sbjct: 58  AIEQAVEVLKKGGIIIYPTDTVYGLGCDITNQKAIERICRIRGIKPEKANFSFVC--SDL 115

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +  +   +D  +  + K   PGP T +L+  +  ++  L ++N KT   RVP     +
Sbjct: 116 RHISDYIKPIDTTTFRVLKKALPGPFTFILN--ANNNVPKLLSSNKKTVGIRVPDNDIAR 173

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG 170
           +++   G+P+   S     + I  +    ++       + L+IDGG
Sbjct: 174 EIVRLLGNPILSTSIKDDDEVIEYSTDPELIHEKYEDRVDLVIDGG 219


>gi|332881939|ref|ZP_08449581.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680174|gb|EGJ53129.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 185

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 76/138 (55%), Gaps = 11/138 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E L AG  I  PT+TV+G+  D+ N +A+ R++ IK+R     LI  VS I+M++ 
Sbjct: 5   QQITEILKAGGVILYPTDTVWGIGCDATNASAVARIFTIKQRSESKSLIILVSSITMLRD 64

Query: 73  HASVDPLSL--HLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           + +  P ++  +L K+    P T++ +   LL+T  I   +T  ++     V   F +++
Sbjct: 65  YIADLPQNILNYLQKV--TEPTTIIYENPQLLATNVIAADNTVAIRL----VQDPFCQQM 118

Query: 128 IETYGHPLAIPSANRSGQ 145
           I  +G P+   SAN SGQ
Sbjct: 119 IAHFGKPIVSTSANISGQ 136


>gi|188996882|ref|YP_001931133.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931949|gb|ACD66579.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 195

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 15/203 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+I  S  L  A + +  G  +   T+T+YG+  ++ +  A+ ++Y IK+R    P I  
Sbjct: 1   MNINISTKLDDAIDVIKHGGIVITKTDTIYGILANALDKEAVEKVYLIKEREKDKPFIIL 60

Query: 64  VSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120
           + +   +KK     +P      K+     +T++ D+    +         KT  FR+P  
Sbjct: 61  IPNTKFLKKIKVKENP---QAEKILNLKGITVIFDVNDPNNELEYLHRGTKTLAFRIPDD 117

Query: 121 ---CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
                F  KL      P+  PSAN SG     ++   +      ++ L ID G S+  + 
Sbjct: 118 PEFLSFLNKL----DTPIVAPSANPSGLKPAEDINKAI-EYFKDKVDLYIDRGKSETNIP 172

Query: 178 STIVNVQCEKKVRILRPGGLEIE 200
           STIV V+   K++ILR G  +I+
Sbjct: 173 STIVKVENS-KIKILRQGSKQID 194


>gi|170590097|ref|XP_001899809.1| yrdC domain containing protein [Brugia malayi]
 gi|158592728|gb|EDP31325.1| yrdC domain containing protein [Brugia malayi]
          Length = 232

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 27/203 (13%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T S A+ +  +  ++G  +A+PT+TVYG+A    N     +LY++K+R  + PL   VS+
Sbjct: 18  TYSAAICRCLQIFESGGIVALPTDTVYGVATALPNSD---KLYKLKRRSRLKPLGLFVSN 74

Query: 67  ISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
           +  V++  H ++D   L   +   PGP+TL+ +   +T +  +      T   R+P   F
Sbjct: 75  VREVQRWCHQTIDNNQL---RTLLPGPVTLIFE--RSTSLPSIFNPEHGTVGIRIPDHDF 129

Query: 124 TKKLIETYGH-PLAIPSAN----RSGQISITNVKHILSSSICKEIPLIIDGGI-----SK 173
            + L+      PLA  SAN    +S  + I + K +       E+ LIID GI       
Sbjct: 130 VRSLMTRLDDVPLAQTSANISNDQSSPVCIEDFKDLW-----PELDLIIDDGIVFQRDGN 184

Query: 174 IGLE-STIVNVQCEKKVRILRPG 195
           +  E ST+VN+       I+R G
Sbjct: 185 VNREGSTVVNLSIPGTYSIIRDG 207


>gi|332880171|ref|ZP_08447853.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681930|gb|EGJ54845.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 189

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  I  PT+T++G+  D+ N  A+RR+Y+IKKR     LIC V     ++
Sbjct: 7   IRQAVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVDSDHRLQ 66

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           ++ S  P        +   PLT++ D     ++ P   A   +   RV    F+++L   
Sbjct: 67  RYVSDVPNVAWDLIEYATRPLTIIFD--KAKNLAPNLLAEDGSVGIRVTREEFSRQLCYR 124

Query: 131 YGHPLAIPSANRSGQ 145
           +   +   SAN SG+
Sbjct: 125 FQKAVVSTSANVSGE 139


>gi|71898888|ref|ZP_00681055.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1]
 gi|71731300|gb|EAO33364.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1]
          Length = 209

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 5/190 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S+  +  L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   
Sbjct: 22  SMATTLTLSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVT 81

Query: 65  SDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           ++++ ++   ++D LS   LH  +  WPGP T VL   ST   H ++  +   A      
Sbjct: 82  AELNTLQDWLNLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAH 140

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L   +   L   SAN +GQ S    +  L  S+   +  I+DG    +   + I 
Sbjct: 141 PLVSALCRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTPIR 199

Query: 182 NVQCEKKVRI 191
           + +    +R+
Sbjct: 200 DARSGHILRL 209


>gi|295086554|emb|CBK68077.1| translation factor SUA5 [Bacteroides xylanisolvens XB1A]
          Length = 202

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++       +V 
Sbjct: 20  IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 73

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     +  + W        PLT++       ++ P   A   +   RV    F+
Sbjct: 74  SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFS 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           ++L + +   +   SAN SGQ    N   I
Sbjct: 132 RRLCQQFRKAIVSTSANVSGQPGAANFSEI 161


>gi|266619533|ref|ZP_06112468.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM
           13479]
 gi|288868944|gb|EFD01243.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM
           13479]
          Length = 216

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 29/199 (14%)

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           S T   H+      K I +I+DGG   IG+ESTI++V  +  V ILRPG +  E     +
Sbjct: 3   SPTTADHVWQDMNGK-IDMIVDGGPVGIGVESTIIDVSGQVPV-ILRPGAVTQEMAGAVL 60

Query: 207 SVEL--------EYCVDETSTPQSPGMLKSHYAPRSQVRL---------RAIHVNPREAL 249
            +E+        +  +     P++PGM   HYAP++ + L         R I+   +E L
Sbjct: 61  GMEIGLDPAITGDGPMKADVKPKAPGMKYKHYAPKADLTLVEGEPAEVARTINHLAKEKL 120

Query: 250 ---IRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
               R G +          E  + SL L    + +  A NL+  ++  DD  A  I   S
Sbjct: 121 QAGYRVGIICTDETRELYPEGMVRSLGLRA--REETIAHNLYAVLREFDDLEADYIYSES 178

Query: 302 IPNHGLGIAINNRLERAAA 320
                LG AI NRL++AA 
Sbjct: 179 FSADHLGQAIMNRLKKAAG 197


>gi|256823825|ref|YP_003147788.1| SUA5/yciO/yrdC domain-containing protein [Kangiella koreensis DSM
           16069]
 gi|256797364|gb|ACV28020.1| SUA5/yciO/yrdC domain protein [Kangiella koreensis DSM 16069]
          Length = 187

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 17/195 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+  +   +  A + +  G  IA PTE VYGL    +   AI+R+ +IK+RP    LI  
Sbjct: 1   MAYINPFKMHYAAQRIQQGGVIAYPTEAVYGLGCHPKAEQAIQRILKIKRRPWQKGLILV 60

Query: 64  VSDISMVKKHASVDPLSL-------HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            S++  +K + S D  +L       H   + W  P+          ++ PL     +   
Sbjct: 61  ASNVEQIKPYLSDDGKALISCFNEQHKRPVTWLLPV--------HAEVSPLLRGTHEKIA 112

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+    F K L +     L   SANR+GQ  +T  + +    +  E+ +II G      
Sbjct: 113 VRLSTNPFVKALCDAANSALVSTSANRAGQPEMTKAEQV-RCQMGSELDMIIVGPTGGHT 171

Query: 176 LESTIVNVQCEKKVR 190
             S+I++ Q  + +R
Sbjct: 172 RPSSIIDAQTREVLR 186


>gi|88607846|ref|YP_505359.1| Sua5/YciO/YrdC/YwlC family protein [Anaplasma phagocytophilum HZ]
 gi|88598909|gb|ABD44379.1| Sua5/YciO/YrdC/YwlC family protein [Anaplasma phagocytophilum HZ]
          Length = 200

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 27/184 (14%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PTET+Y LA ++ +  A+ +LY+IK+R    P    + DI  VKK +++    L + 
Sbjct: 15  VCFPTETLYALACNAFSERAVAKLYDIKRRLYDKPFSLMLGDIQQVKKFSNMKNTDLRIM 74

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-------FTKKLIETYGHPLA 136
           ++  PGP+T +L         PL  A NL    F+   G           ++  +  P+ 
Sbjct: 75  EMLSPGPITFIL---------PLHYAQNLPRRFFKDTLGVRIPDHALACNILSRFEFPVV 125

Query: 137 IPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
             SAN SG+   +  +++   L   + K    + +   S  G+ ST+ ++  +K   ILR
Sbjct: 126 ATSANLSGERDALKASDIPEELRMHVSK----LWEDDSSVSGMCSTVFDMVSQK---ILR 178

Query: 194 PGGL 197
            G L
Sbjct: 179 TGML 182


>gi|300789603|ref|YP_003769894.1| SUA5/YciO/YrdC/YwlC family protein [Amycolatopsis mediterranei U32]
 gi|299799117|gb|ADJ49492.1| SUA5/YciO/YrdC/YwlC family protein [Amycolatopsis mediterranei U32]
          Length = 216

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 7/189 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D+ +  A++ L   K R    P+   V   S V      V P +  L
Sbjct: 30  VVLPTDTVYGIGADAFDAGAVQALLRAKNRGPDMPVGVLVGSWSTVDGLVLGVPPQARAL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L++VL    +   + L  A   T   R+P      +L+   G P+A+ SAN 
Sbjct: 90  IEAFWPGDLSIVLPHAPSLQWN-LGDAR-GTVMLRMPLHPVALELLRDVG-PMAVSSANV 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+   +  +      +   + + +DGG S   + S+IV++   + V +LR G +  E +
Sbjct: 147 SGRPPASTAQEA-QEQLGDSVAVYLDGGSSGEAVASSIVDLTGTEPV-VLREGAVGKEAI 204

Query: 203 KRAISVELE 211
              + V  E
Sbjct: 205 AEVLGVPAE 213


>gi|297192051|ref|ZP_06909449.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719499|gb|EDY63407.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 215

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 23/208 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+ +P A+  L E K R    P    +   +
Sbjct: 14  TTGLREAASAVRRGELVVLPTDTVYGIGADAFSPEAVADLLEAKGRGRNMPTPVLIGSPN 73

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC 121
            +  H  V   S     L   +WPG LTLV      T   P    NL     T   R+P 
Sbjct: 74  TL--HGLVTDFSEQAWELVDAYWPGALTLV------TKHQPSLQWNLGDTRGTVAIRMPL 125

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLES 178
                 + T   P+A+ SAN +G  S  +    + +L  S+     + +DGG +   + S
Sbjct: 126 HPVAIELLTEVGPMAVSSANLTGHPSPEDCDAAQGMLGDSVS----VYLDGGPTPGIVPS 181

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206
           +IV+V  +  V +LR G L  + L++ +
Sbjct: 182 SIVDVTGKVPV-LLREGALSADELRKVV 208


>gi|313617107|gb|EFR89657.1| Sua5/YciO/YrdC/YwlC family protein [Listeria innocua FSL S4-378]
          Length = 151

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 14/150 (9%)

Query: 191 ILRPGGLEIETLKRAI-SVELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-------RAI 241
           ILRPGG+ IE +++ I +V+L      ET  P++PGM  +HYAP++ V L          
Sbjct: 2   ILRPGGITIEQIEQVIGTVDLSTNSTTETEKPKAPGMKYTHYAPKAPVYLVEGSSQFWQS 61

Query: 242 HVNPRE-ALIRFGNVPIKNIENAI-ISLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296
            +N  E A  + G +  K + + +  S  +  TG +K   E A +L+  ++  D +    
Sbjct: 62  EINKVEIAGKKLGILATKELTSKLATSAVIQSTGSIKAMGEIATSLYKGLRAFDHADVDI 121

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           I     P   LG AI NRLE+AA  R  S+
Sbjct: 122 IFAEVYPETELGAAIMNRLEKAAGNRRISE 151


>gi|146300267|ref|YP_001194858.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae
           UW101]
 gi|146154685|gb|ABQ05539.1| translation factor SUA5 [Flavobacterium johnsoniae UW101]
          Length = 189

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 5/181 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-H 73
           A E +  G  I  PT+TV+G+  D+ NP A+ ++Y++K+R     +I  ++   M+    
Sbjct: 11  AYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVLMNGEKMMYNVF 70

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            ++  ++  +  L    P TL+LD       H + +A+       V   F  KL+E    
Sbjct: 71  KNIPEVAWQILDLS-EKPTTLILDDARNV-AHNVISADKSLGVRLVKEPFCYKLMERMKK 128

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIVNVQCEKKVRIL 192
           PL   SAN SGQ +  + K I S  I   +  ++     K+ G  STI+ +  + +V+I+
Sbjct: 129 PLVSTSANISGQPTPMSFKEI-SPEIINGVDYVVKLNQDKVAGKPSTIIKLTNDSQVKII 187

Query: 193 R 193
           R
Sbjct: 188 R 188


>gi|124007775|ref|ZP_01692477.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134]
 gi|123986721|gb|EAY26502.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134]
          Length = 209

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 22/199 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-------LICHV 64
           + +  E L +G  I  PT+TVYGL  D  N  A+ ++ +IKK   +NP        IC+ 
Sbjct: 18  ISQVVECLRSGGVIIYPTDTVYGLGCDIHNQKAVEKICQIKK---INPKKRKNLSFICN- 73

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+S + ++A +   +  L K   PGP T +L+  +++ +  +   + K    R+P    
Sbjct: 74  -DLSHIAEYARIGNATFKLMKKALPGPYTFILE--TSSRVPKILNISKKNVGIRIPDNNI 130

Query: 125 KKLI-ETYGHPLAIPSANRSGQI--SITNVKHILSSSICKEIPLIIDGGI-SKIGLESTI 180
            +LI +  G+P+   S     ++   +T+ + I      K + L+IDGG  S +G  STI
Sbjct: 131 ARLIVKELGNPIITSSVLAEDEVVKYLTDPEDIYEQYKHK-VDLVIDGGNGSNVG--STI 187

Query: 181 VNVQCEKKVRILRPGGLEI 199
           ++   +  V +LR G  +I
Sbjct: 188 IDCS-DDNVTVLRQGAGDI 205


>gi|332876662|ref|ZP_08444421.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685367|gb|EGJ58205.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 202

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 20/197 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVS 65
           + KA + L  G  I  PT+TVY +  D+ N  A+ R+  +K    +NP      +IC+  
Sbjct: 15  MAKALKMLRDGELIIYPTDTVYAIGCDALNVRAVERICALK---GVNPQKSNLSIICY-- 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           D+S + ++A V   +  L K   PGP T +   L T+   P    N K    RVP     
Sbjct: 70  DLSNISEYAQVSNAAFKLLKKNLPGPFTFI---LPTSSRLPKIYKNKKEVGIRVPDNSIA 126

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVN 182
           + L++  G+P+   S +   + I  +    ++       + L+IDGG    G E ST+VN
Sbjct: 127 RGLVDGLGNPILTMSVHDEDEIIEYSTDPELIHEKYEGRVALVIDGGYG--GSEASTVVN 184

Query: 183 VQCEKKVRILRPGGLEI 199
              +    ++R G  E+
Sbjct: 185 C-VDDAFEVVRQGKGEL 200


>gi|227495020|ref|ZP_03925336.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces coleocanis DSM
           15436]
 gi|226831472|gb|EEH63855.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces coleocanis DSM
           15436]
          Length = 209

 Score = 60.1 bits (144), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 11/204 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHV 64
           D  A     E + A  PI +PT+TVYG+  +  +  A+  +   K R    P   LI   
Sbjct: 11  DDAAKNAVKEAIAADSPIVLPTDTVYGIGGNPASTQAVNNVLAAKGRDRQMPPPVLISSP 70

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVPCGF 123
           +++ +V K+   +  +  L + FWPG LTL+L+   T D+      ++  T   R+P   
Sbjct: 71  TEVDLVAKNIPQN--ARILMEKFWPGALTLILE---TGDLVNYDLGDMPDTIAVRMPNHP 125

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               I     PLA+ SAN +G    T+     +     ++ L  D G +   + STIV  
Sbjct: 126 VALEILKATGPLAVTSANLTGAEPATDCAQA-TEYFGDKVALYFDAGATPGPVPSTIVKF 184

Query: 184 QCEKKVRILRPGGLEIETLKRAIS 207
             E  + ILR G +    L++AI+
Sbjct: 185 NGE-NLEILRAGLISETALQQAIA 207


>gi|256380139|ref|YP_003103799.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827]
 gi|255924442|gb|ACU39953.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827]
          Length = 216

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 17/194 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D+ +  A+R L   K R    P+   V   + +     SV   +  L
Sbjct: 30  VVLPTDTVYGIGCDAFDAAAVRSLLAAKGRGPDMPVPVLVGSWTTIDGLVLSVPRQARSL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTA-----NLKTACFRVPCG-FTKKLIETYGHPLAI 137
            + FWPG L+LVL        H  S A        T   R+P      +L+   G P+A+
Sbjct: 90  IEAFWPGGLSLVLH-------HAPSLAWDLGQTRGTVMLRMPLHPVALELLRDVG-PMAV 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN+SG    ++        + +++ + +DGG S   + STIV++     + +LR G +
Sbjct: 142 SSANKSGFPPASSAAQA-REQLGEDVQVYLDGGPSGENVASTIVDLTGTDPL-VLREGAV 199

Query: 198 EIETLKRAISVELE 211
            +  +   + VE+E
Sbjct: 200 PVADIASVLGVEVE 213


>gi|55379248|ref|YP_137098.1| DNA-binding protein [Haloarcula marismortui ATCC 43049]
 gi|55231973|gb|AAV47392.1| DNA binding protein [Haloarcula marismortui ATCC 43049]
          Length = 210

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PTETVYGL  D+ +  A+ R+++ K R    P+   V DI   +++  +    L   
Sbjct: 33  VVYPTETVYGLGADALDAAAVERVFDAKGRERDKPVSLAVPDIESAREYTRLSDRELAFM 92

Query: 85  KLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
           + F PGP+T+V++     D+ P +  A       RVP      +L+   G PL   SAN 
Sbjct: 93  REFLPGPVTVVVE---RRDVVPDVLVAGQDRVGVRVPDHDLALELLAETG-PLTATSANI 148

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           SG  S+  V  +   +I +   +++D G +  G  ST+VNV  
Sbjct: 149 SGNPSVRTVDDL--DAIRERAAVVLDAGETDGGTGSTVVNVDS 189


>gi|218710991|ref|YP_002418612.1| Sua5/YciO/YrdC family protein [Vibrio splendidus LGP32]
 gi|218324010|emb|CAV20372.1| Sua5/YciO/YrdC family protein [Vibrio splendidus LGP32]
          Length = 189

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +  +   + L  G  IA PTE V+G+  D  NP AI++L ++K+RP    LI   +    
Sbjct: 6   DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIAASYEQ 65

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L   K  WPGP+T ++   +++ +    +    +   RV      +
Sbjct: 66  LLPYIDESQLTEAQLATVKATWPGPVTWIMP--TSSKVTDWVSGQFDSIAVRVTDHPLVQ 123

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   +G PL   SAN +G+      + +    + + +  I++G   + G       ++ 
Sbjct: 124 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEG---QTGGREKPSEIRD 179

Query: 186 EKKVRILRPG 195
            K  +ILR G
Sbjct: 180 AKTSKILRQG 189


>gi|149178883|ref|ZP_01857462.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Planctomyces maris DSM 8797]
 gi|148842295|gb|EDL56679.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Planctomyces maris DSM 8797]
          Length = 369

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 27/239 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A ++L  G  +A PT T Y +A  S +P A+ +L  +       PL+  V     
Sbjct: 15  DVIHLAVQYLAKGELVAFPTATAYVIAGQSLSPAAMTKLRALTG--GDQPLVLCVKGFDE 72

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLD------LLST------TDIHPLSTANLKTAC 116
            + +   + PL+  LAK  WPGP+ L L+      L S       ++I P S   L+   
Sbjct: 73  AQDYLPEMPPLARKLAKRCWPGPVVLELERPQPGSLFSQLPPEVQSEICPGSQLRLRAPA 132

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
             +      + +     PL + + +   Q + +     L     +E+ L+ID G S+ G 
Sbjct: 133 HEI----IFQAMRLSPSPLVLLNEDSKYQTADS-----LIDDFGEEVALVIDDGPSRFGD 183

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAPR 233
           +STIV +  + + +IL+PG +   TLKR  S + +  C   T  +P + G+ +   A +
Sbjct: 184 QSTIVGI-VDNQWKILQPGVVTETTLKRLSSEIYMFVCTGNTCRSPMAEGLFRKLLADK 241


>gi|237785866|ref|YP_002906571.1| hypothetical protein ckrop_1283 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758778|gb|ACR18028.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 218

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 17/214 (7%)

Query: 3   IMSITDSNALRKACEF----LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           I   TD +  R+  E     +  G  + IPT+TVYG+  D+ +  A+  L   K R    
Sbjct: 4   IYDCTDQDERRRGLEAAQSAVKGGRLVVIPTDTVYGIGCDAFDNDAVAALLRAKHRGPDM 63

Query: 59  PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P+   V     V     +V P    L + FWPG L+ V+    +     L   N  +   
Sbjct: 64  PVPVLVGSWDTVDGLVQTVTPRMRELVQAFWPGGLSFVVTQAPSLPWD-LGDTN-GSVML 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISK 173
           R+P      +L+   G P+A+ SAN SGQ   T+    K +L S    E+ + +D G + 
Sbjct: 122 RMPLQPVAIELLRATG-PMAVSSANISGQPPATSAIAAKQMLGS----EVSVYLDDGEAT 176

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           IG  STI+++       +LR G +  E +   I 
Sbjct: 177 IGEPSTIIDLTSPTP-HLLREGAISAERISEVIG 209


>gi|158312866|ref|YP_001505374.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec]
 gi|158108271|gb|ABW10468.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec]
          Length = 216

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 19/213 (8%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ+   +D       L  A + +  G  + +PT+T+YG+  D+ N  A+  L   K R  
Sbjct: 1   MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGR 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
             P+   V     +   A  + ++ H   L + FWPG LTLV++   +     L  A   
Sbjct: 61  NMPVPVLVGSWRTLDGLA--EQVTGHIRDLVRAFWPGGLTLVVNHAPSLRWD-LGDAR-G 116

Query: 114 TACFRVPCGFTKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
           T   R+P       IE  G   P+A+ SAN SG+   T+    + + +     + +DGG 
Sbjct: 117 TVAVRMP--LHPVAIELLGRTGPMAVSSANISGRPPATSAVDAV-AQLGGAAAVYLDGGT 173

Query: 172 SKIGLESTIVNVQCEKKV-RILRPGGLEIETLK 203
           + +G  STIV+  C   V  ++R G +++  L+
Sbjct: 174 TPVGTASTIVD--CTGPVPTVVREGAVDLAALR 204


>gi|330995801|ref|ZP_08319698.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329574531|gb|EGG56096.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 189

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  I  PT+T++G+  D+ N  A+RR+Y+IKKR     LIC V     ++
Sbjct: 7   IRQAVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVDSDHRLQ 66

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           ++ S  P        +   PLT++ D     ++ P   A   +   RV    F+++L   
Sbjct: 67  RYVSDVPNVAWDLIEYATRPLTIIFD--KAKNLAPNLLAEDGSVGIRVTREEFSRELCYR 124

Query: 131 YGHPLAIPSANRSGQ 145
           +   +   SAN SG+
Sbjct: 125 FQKAVVSTSANVSGE 139


>gi|34496005|ref|NP_900220.1| Sua5/YciO/YrdC family protein [Chromobacterium violaceum ATCC
           12472]
 gi|81656937|sp|Q7P0L7|RIMN_CHRVO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|34101858|gb|AAQ58226.1| probable Sua5/YciO/YrdC family protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 193

 Score = 59.7 bits (143), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 13/179 (7%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           +  D G+ IA  TE+ YGL     +  AIRR+  IK RP    LI   +D   ++    V
Sbjct: 23  QLRDGGV-IAYSTESCYGLGCRPLDARAIRRVLAIKARPNHKGLIVIAADFEQIRH--LV 79

Query: 77  DPLS----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
            PLS      LA+ +WPGP T +L   ++  + P           RV   G    L    
Sbjct: 80  KPLSAAQRAELAR-YWPGPYTFLLP--ASRRVPPALRGRHHKIAVRVTAHGEAAALCRRL 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           G  L   SANR+GQ S+   +    +   K+  L + G I K    STI++++  + +R
Sbjct: 137 GTALVSTSANRAGQQSLKTARACRMA--FKDKVLTLPGRIGKRRKPSTIIDLESGRVLR 193


>gi|330444529|ref|YP_004377515.1| SUA5 protein [Chlamydophila pecorum E58]
 gi|328807639|gb|AEB41812.1| SUA5 protein [Chlamydophila pecorum E58]
          Length = 290

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASV 76
           +  G  +AIPT+TV+GL     +P A  +LY++KKR     L  +V+ +  ++K  H  +
Sbjct: 17  IQLGKVVAIPTDTVFGLVCSQHSPQAKTQLYQMKKRSKSKTLAVYVNTLEEIEKMIHRPL 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPL 135
               L +AK F PGPL+L+L      + +P  + +  T  FR V     ++LI   G PL
Sbjct: 77  SSQELRVAKTFLPGPLSLILH-----NKNPEFSES--TLTFRIVNHPVVQELISVCG-PL 128

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              SAN S          +L     K   L I  G   +GLEST+ +V
Sbjct: 129 VGTSANISDFPPAVYAHEVLEDF--KTEDLCIFDGDCFLGLESTVASV 174


>gi|78212027|ref|YP_380806.1| hypothetical protein Syncc9605_0477 [Synechococcus sp. CC9605]
 gi|78196486|gb|ABB34251.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 199

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 69/134 (51%), Gaps = 16/134 (11%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---CHVSDI---SMVKK 72
           L AG    IPT+T+ GLAV    P   + L+ +K+RPA  PLI     V+D+     V  
Sbjct: 15  LRAGEAAIIPTDTLPGLAV---CPDQAQTLWRLKRRPADKPLILMGASVNDLLHEVAVPC 71

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           H  V+     LA+ +WPG LTLVL          L+       C R+P C  T+ L++  
Sbjct: 72  HREVE----ALAERYWPGALTLVLPARDGGAGRYLNPGGTTLGC-RIPACEQTRALLQIS 126

Query: 132 GHPLAIPSANRSGQ 145
           G PLA  SANRSG+
Sbjct: 127 G-PLATTSANRSGE 139


>gi|306817931|ref|ZP_07451669.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239]
 gi|304649274|gb|EFM46561.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239]
          Length = 222

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 23/174 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVD-PL 79
           + IPT+TVYG+A     P A++RL   K R    P    VS +    S++++ A    P 
Sbjct: 31  LVIPTDTVYGIASVPFEPAAVQRLQGAKGRSEDFPPPVLVSGVAALDSLLERPAIFGAPA 90

Query: 80  SLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIE 129
            L+     LA  FWPGPLT++         +P    NL     T   R P      +++E
Sbjct: 91  PLYEAARRLATAFWPGPLTII------ARANPRLGWNLGKTGGTIALRQPDHPVALQILE 144

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             G PLA+ SANR G    T++    ++    ++ + +D G S  G  STIVN+
Sbjct: 145 ATG-PLAVTSANRHGAPPATDISAA-TAYFWDKVAVYVDAGESPSGQPSTIVNL 196


>gi|296119523|ref|ZP_06838081.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967406|gb|EFG80673.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 235

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 11/191 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMN-PLICHVSDISMVKKHASVDPLSLH 82
           I  PT+TVYGL  D+ +  A+  L   K R P M  P++    D +     +  D + L 
Sbjct: 31  IVTPTDTVYGLGCDAFDNDAVASLLAAKHRGPDMPVPVLIGSWDTAKGLVQSFTDQMKL- 89

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAIPSA 140
           L + FWPG L++V+    +    P +  + + T   R+P      +L+   G P+A+ SA
Sbjct: 90  LTEAFWPGGLSIVVPQAPSL---PWNLGDTRGTVMLRMPLHPIAIELLREVG-PMAVSSA 145

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG    T         + K + + +DGG + IG  STI+++       +LR G L  E
Sbjct: 146 NISGHAPATTAIAA-KQQLGKAVAVYLDGGEAPIGEPSTIIDLSGPWPY-LLREGALSAE 203

Query: 201 TLKRAISVELE 211
            +   I V+ +
Sbjct: 204 RISEVIGVDAQ 214


>gi|307701295|ref|ZP_07638316.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16]
 gi|307613456|gb|EFN92704.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16]
          Length = 222

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 23/174 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVD-PL 79
           + IPT+TVYG+A     P A++RL   K R    P    VS +    S++++ A    P 
Sbjct: 31  LVIPTDTVYGIASVPFEPAAVQRLQGAKGRGEDFPPPVLVSGVAALDSLLERPAIFGAPA 90

Query: 80  SLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIE 129
            L+     LA  FWPGPLT++         +P    NL     T   R P      +++E
Sbjct: 91  PLYEAARRLATAFWPGPLTII------ARANPRLGWNLGKTGGTIALRQPNHPVALQILE 144

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             G PLA+ SANR G    T++    ++    ++ + +D G S  G  STIVN+
Sbjct: 145 ATG-PLAVTSANRHGAPPATDISAA-TAYFWDKVAVYVDAGESPSGQPSTIVNL 196


>gi|281419747|ref|ZP_06250746.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella copri DSM 18205]
 gi|281406276|gb|EFB36956.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella copri DSM 18205]
          Length = 190

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++ A E +  G  I  PT+TV+G+  D+ NP A++++YEIKKR     LIC + 
Sbjct: 1   MTVEEDIKHAVECMRKGGVILYPTDTVWGIGCDATNPEAVKKVYEIKKRDDSKALICLID 60

Query: 66  DIS-MVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
               M +   +V  ++        P  P T++LD    + +     A   +   R+    
Sbjct: 61  SADRMARYFRNVPQVAWDFIDAAMPVKPTTVILD--DASGVANNLVAEDGSLAMRITYEP 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           F+K+L   +  P+   SAN SG+ +  N + I
Sbjct: 119 FSKQLCYRFQKPIVSTSANVSGEPAAQNYRDI 150


>gi|149190428|ref|ZP_01868699.1| Sua5/YciO/YrdC family protein [Vibrio shilonii AK1]
 gi|148835682|gb|EDL52648.1| Sua5/YciO/YrdC family protein [Vibrio shilonii AK1]
          Length = 185

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 14/183 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L +G  IA PTE V+G+  D  + +AI +L  +K+RP    LI   ++   ++ +  VD 
Sbjct: 11  LKSGEVIAYPTEGVFGVGCDPDDVSAIEKLLAVKQRPVEKGLILIAANYEQLRPY--VDE 68

Query: 79  LSLHLAKL-----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
             L   +L      WPGP T ++   ++  +    +    T   RV      ++L  +YG
Sbjct: 69  TKLTATQLESVQNTWPGPYTWIMP--ASDRVSSWLSGAFDTIAVRVTDHELVQQLCLSYG 126

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+   SAN SG  S    + +  S +   +  I+DG   + G  +    ++  + +++L
Sbjct: 127 KPITSTSANLSGMPSCMTTEEV-KSQLGDRLAEILDG---ETGGRNKPSEIRDARTLKVL 182

Query: 193 RPG 195
           R G
Sbjct: 183 RQG 185


>gi|289643110|ref|ZP_06475240.1| Sua5/YciO/YrdC/YwlC family protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507074|gb|EFD28043.1| Sua5/YciO/YrdC/YwlC family protein [Frankia symbiont of Datisca
           glomerata]
          Length = 218

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 15/208 (7%)

Query: 7   TDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           TDS      L  A   +  G  + +PT+T+YG+  D+ +  A+R L   K R    P+  
Sbjct: 8   TDSEVRVAGLEAATRAVRHGGLVVLPTDTLYGIGADAFDQVAVRALLTAKGRGPEMPVPV 67

Query: 63  HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            +     +      V      L + FWPG LTL++    +     L  A   T   R+P 
Sbjct: 68  LIGSWRTLDGLVERVTEQVRDLVRAFWPGGLTLIVRHAPSLSWD-LGDAR-GTVAVRMP- 124

Query: 122 GFTKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 IE  G   P+A+ SAN SG+   T       + +   + + +DGG   +G+ ST
Sbjct: 125 -LHPVAIELLGRTGPMAVSSANISGRPPATTADDAF-AQLGDSVEVYLDGGPCALGVAST 182

Query: 180 IVNVQCEKKV-RILRPGGLEIETLKRAI 206
           IV+  C   V R+LR G +++  L+  +
Sbjct: 183 IVD--CTDDVPRVLRVGAVDLAALRAVV 208


>gi|323526589|ref|YP_004228742.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001]
 gi|323383591|gb|ADX55682.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001]
          Length = 211

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 11/195 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S + 
Sbjct: 17  VKQAVQIINDGGVVALPTDSSYALACHLDDKNAVERLRRIRGLDEKQLLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++ 
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILG 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G+ +  N    + + + K++ L+IDGG + +   ST++++  ++ V
Sbjct: 135 ELGQPLLGSSLILPGETAPLNDPEDIRARLEKQLDLVIDGG-ACVCEPSTVIDLTGDEPV 193

Query: 190 RI------LRPGGLE 198
            +      L P GLE
Sbjct: 194 LVRAGRGFLAPFGLE 208


>gi|269977554|ref|ZP_06184521.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1]
 gi|269934157|gb|EEZ90724.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1]
          Length = 224

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 23/174 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVD-PL 79
           + IPT+TVYG+A     P A++RL   K R    P    VS +    S++++ A    P 
Sbjct: 31  LVIPTDTVYGIASVPFEPAAVQRLQGAKGRGEDFPPPVLVSGVAALDSLLERPAIFGAPA 90

Query: 80  SLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIE 129
            L+     LA  FWPGPLT++         +P    NL     T   R P      +++E
Sbjct: 91  PLYEAARRLATAFWPGPLTII------ARANPRLGWNLGKTGGTIALRQPNHPVALQILE 144

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             G PLA+ SANR G    T++    ++    ++ + +D G S  G  STIVN+
Sbjct: 145 ATG-PLAVTSANRHGAPPATDISAA-TAYFWDKVAVYVDAGESPSGQPSTIVNL 196


>gi|257064847|ref|YP_003144519.1| Sua5/YciO/YrdC/YwlC family protein [Slackia heliotrinireducens DSM
           20476]
 gi|256792500|gb|ACV23170.1| Sua5/YciO/YrdC/YwlC family protein [Slackia heliotrinireducens DSM
           20476]
          Length = 202

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 12/195 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVD---SRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++++   A   L+ G PI  PT+TVYG+ +    ++ P AI   Y+IK+R A   +   V
Sbjct: 6   ETSSFDDALAALNVGRPIIFPTDTVYGIGLAVGLAQTPQAI---YDIKERDAGKAIPWLV 62

Query: 65  SD-ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
               S++     V   +  +A++FWPGPLTL++   ST  +         T   R+P   
Sbjct: 63  GQHSSLLLYGQDVPEFAQTMARVFWPGPLTLIVRAAST--VPKAFCGPDGTIALRMPDDD 120

Query: 124 TK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           T  +LI   G PLA  SAN  G         I   ++   +   +   + + G+ ST+ +
Sbjct: 121 TALELIRRCGFPLATSSANLQGHKPPRRFSEI-DPAVLSRVSAALGDNVPRSGVSSTVAD 179

Query: 183 VQCEKKVRILRPGGL 197
              +    I+R G +
Sbjct: 180 CTGDHP-EIIRVGAI 193


>gi|254515967|ref|ZP_05128027.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR5-3]
 gi|219675689|gb|EED32055.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR5-3]
          Length = 187

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R     L  G  IA PTE V+GL+ D  + +A++RL ++K+RPA   LI    D S ++ 
Sbjct: 10  RLCANVLAGGGVIACPTEAVWGLSCDPFSGSAVQRLLDLKQRPAHKGLILVAGDESQLEF 69

Query: 73  -HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIE 129
             A + P      ++ WPGP T ++       +  L     ++   RV  G    ++L  
Sbjct: 70  LLADLAPALRQKLRVSWPGPNTWLVP--HHGRVPALVHGKFESVAVRV-SGHPGVRELCR 126

Query: 130 TYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            YG PL   SAN +GQ    ++  V++   + +   +P    G ++  G  STI +V  +
Sbjct: 127 VYGGPLVSSSANVAGQPAPKTLLAVRNYFGTRLDGLLP----GQVAAAGRPSTIRDVFTD 182

Query: 187 KKVR 190
           +  R
Sbjct: 183 EVFR 186


>gi|329957244|ref|ZP_08297764.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056]
 gi|328522957|gb|EGF50060.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056]
          Length = 187

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+TV+G+  D+ N  A+RR+YEIK+R     ++       +V 
Sbjct: 5   IKKACQVMREGGVILYPTDTVWGIGCDATNEDAVRRVYEIKQRQDSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     + ++ W        PLT++         + L  A   +A  RV    F+
Sbjct: 59  SSVKVDFYVRDVPEVAWDLIDLADKPLTIIYSGARNLAANLL--AEDGSAGIRVTNEEFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           K+L + +   +   SAN SGQ S  N   I
Sbjct: 117 KRLCQQFRKAIVSTSANISGQPSPKNFSEI 146


>gi|145222897|ref|YP_001133575.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium gilvum PYR-GCK]
 gi|145215383|gb|ABP44787.1| translation factor SUA5 [Mycobacterium gilvum PYR-GCK]
          Length = 221

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 7/205 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   L  G  + +PT+TVYG+  D+ +  A+  L + K R    P+   V    
Sbjct: 15  ATGIASAISALKEGRLVVMPTDTVYGIGADAFDGEAVAALLDAKGRGRDMPVPVLVGSWH 74

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +       P S   L + FWPG L+LV+    +     L  AN  T   R+P      +
Sbjct: 75  TISGLVYTVPNSAKELIRAFWPGALSLVVHQAPSLQWD-LGDAN-GTVMLRMPLHPVAIE 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A+ SAN SG  +           +   + + +DGG ++    STIV++   
Sbjct: 133 LLREVG-PMAVSSANISGSPAAVTAAQA-REQLGDRVEVYLDGGPAEQQAASTIVDLTGA 190

Query: 187 KKVRILRPGGLEIETLKRAISVELE 211
              R+LR G + +E +   + VE +
Sbjct: 191 HP-RVLRQGPVTLEAIADVLGVEAQ 214


>gi|156972719|ref|YP_001443626.1| translation factor [Vibrio harveyi ATCC BAA-1116]
 gi|212288234|sp|A7N129|RIMN_VIBHB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|156524313|gb|ABU69399.1| hypothetical protein VIBHAR_00384 [Vibrio harveyi ATCC BAA-1116]
          Length = 185

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    +  +     
Sbjct: 11  LQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLPYIDESQ 70

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           L+   L      WPGP T ++   ++  +    +    +   RV      +K+   +G P
Sbjct: 71  LTQEQLDQVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128

Query: 135 LAIPSANRSGQ 145
           L   SAN +GQ
Sbjct: 129 LTSTSANLTGQ 139


>gi|209693706|ref|YP_002261634.1| hypothetical protein VSAL_I0082 [Aliivibrio salmonicida LFI1238]
 gi|208007657|emb|CAQ77767.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 185

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L+ G  IA PTE V+G+  D  N  A+ +L ++K+RP    LI   + I  + 
Sbjct: 4   LDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASIDQLL 63

Query: 72  KH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A ++   ++  K  WPGP+T ++ +   T   PL T    +   RV      K +
Sbjct: 64  PYIDLAQLNNDQINRIKFTWPGPVTWIVPVNKNT--LPLVTGQFDSIAVRVSAHPQVKAI 121

Query: 128 IETYGHPLAIPSANRSG 144
              +G P+   SAN SG
Sbjct: 122 CSAFGKPITSTSANLSG 138


>gi|260062207|ref|YP_003195287.1| Sua5/YciO/YrdC/YwlC family protein [Robiginitalea biformata
           HTCC2501]
 gi|88783769|gb|EAR14940.1| Sua5/YciO/YrdC/YwlC family protein [Robiginitalea biformata
           HTCC2501]
          Length = 190

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 21/200 (10%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M     N L    + L++G  I  PT+TV+G+  D+ NP A+ R+Y +K+RP    LIC 
Sbjct: 1   MKTAMKNILDNCLQVLESGGLILYPTDTVWGIGCDATNPEAVARVYTLKQRPDSKALIC- 59

Query: 64  VSDISMVKKHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACF 117
                +V     ++ L   +  + W        P+T+V D  +   + P   A   +   
Sbjct: 60  -----LVGSGRQLEQLIPEVPDVAWDIMDLSEKPVTIVYD--NPQGVAPNLVAADNSLAV 112

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISK 173
           R+    F ++L+  +  PL   SAN +GQ    S + +   + + +   +PL  +   ++
Sbjct: 113 RIASDNFCRELLRRFRKPLVSTSANLAGQPTPDSFSGIAPDILNGVDYVVPLQQE---TE 169

Query: 174 IGLESTIVNVQCEKKVRILR 193
           +   S+I+ ++ + +V+++R
Sbjct: 170 LRTPSSIIRLKADGQVQVIR 189


>gi|315443362|ref|YP_004076241.1| translation factor SUA5 [Mycobacterium sp. Spyr1]
 gi|315261665|gb|ADT98406.1| translation factor SUA5 [Mycobacterium sp. Spyr1]
          Length = 221

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 7/205 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   L  G  + +PT+TVYG+  D+ +  A+  L + K R    P+   V    
Sbjct: 15  ATGIASAISALKEGRLVVMPTDTVYGIGADAFDGEAVAALLDAKGRGRDMPVPVLVGSWH 74

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++      P S   L + FWPG L+LV+    +     L  AN  T   R+P      +
Sbjct: 75  TIQGLVYTVPNSAKELIRAFWPGALSLVVHQAPSLQWD-LGDAN-GTVMLRMPLHPVAIE 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A+ SAN SG              +   + + +DGG ++    STIV++   
Sbjct: 133 LLREVG-PMAVSSANISGSPPAVTAAQA-REQLGDRVEVYLDGGPAEQQAASTIVDLTGA 190

Query: 187 KKVRILRPGGLEIETLKRAISVELE 211
              R+LR G + +E +   + VE +
Sbjct: 191 HP-RVLRQGPVTLEAIADVLGVEAQ 214


>gi|32491246|ref|NP_871500.1| hypothetical protein WGLp497 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741613|sp|Q8D257|RIMN_WIGBR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|25166453|dbj|BAC24643.1| yrdC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 194

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 14/165 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           +A PTE+++GL  D  + +A+ +L  +KKR      I   ++IS +  +     LS  +L
Sbjct: 27  VAYPTESMFGLGCDPDSISAVNKLIYLKKRKINKGFIIVAANISQLNNYIDCTSLSKNNL 86

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSA 140
            K+F  WPG +T ++      DI      N      RV   F  KK+   +G P+   SA
Sbjct: 87  NKIFCTWPGFITWLMP--PKKDIPCWLIGNNSLIAVRVSNFFPIKKICNIFGKPIISTSA 144

Query: 141 NRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           N SG+I   +I  +KH L S I     +I+D  I K    S I N
Sbjct: 145 NLSGEIPAKNIKEIKHKLGSKI-----IILDHPIGKYSNPSEIRN 184


>gi|86142259|ref|ZP_01060769.1| Sua5/YciO/YrdC/YwlC family protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85831011|gb|EAQ49468.1| Sua5/YciO/YrdC/YwlC family protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 195

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 15/191 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N + ++   +  G  +  PT+TV+G+  D+ N  AI ++Y +KKR     LIC VSD+ M
Sbjct: 12  NEVNESLGVIKRGGLLLYPTDTVWGIGCDATNADAIDKVYALKKRKESKALICLVSDMKM 71

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NL----KTACFR-VPCGF 123
           + +     P   +    +   P T++ D        P+  A NL     T   R V   F
Sbjct: 72  LNQFIEEIPEVAYNILKYADQPTTIIYD-------KPIRVAENLVGEDNTLGIRIVQDEF 124

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVN 182
            + LI+  G PL   SAN SG+ +      I S  I + +  I++     K    STI+ 
Sbjct: 125 CRSLIKKMGRPLVSTSANISGEKTPMRFPEI-SKPILEGVDYIVNLQRKHKSTKSSTIIR 183

Query: 183 VQCEKKVRILR 193
           +  + +V++LR
Sbjct: 184 LSNDGQVKVLR 194


>gi|24212721|ref|NP_710202.1| putative translation factor Sua5 [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45655934|ref|YP_000020.1| hypothetical protein LIC10020 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193354|gb|AAN47220.1| putative translation factor Sua5 [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45599167|gb|AAS68657.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 202

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 23/199 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP--LIC-HVSDIS 68
           L++  + L  G     PT+TVY L  DS++   + +LYE+K      P  LIC  +S  S
Sbjct: 15  LQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKNQPLSLICPSISIAS 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH----PLSTANLKTACFRVPCG-F 123
              +H S D  +  L K   PGP T +    ++ + H      S    K    R+P   +
Sbjct: 75  NYIEHLSND--AFRLMKKITPGPFTFI----TSANKHLPRVSFSNQKEKQIGIRIPDAIY 128

Query: 124 TKKLIETYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            ++L++ + +PL   S  AN    I + +++ I  S +      I+DGGI K+ L STI+
Sbjct: 129 LQELMKIHPNPLTSTSVFANDEFIIEVDSLEKIYGSRVEG----IVDGGILKVEL-STIL 183

Query: 182 NVQCEKKVRILRPG-GLEI 199
           ++  + ++ I+R G G E+
Sbjct: 184 DLTGD-EITIIREGKGFEL 201


>gi|293393274|ref|ZP_06637588.1| ribosome maturation factor RimN [Serratia odorifera DSM 4582]
 gi|291424184|gb|EFE97399.1| ribosome maturation factor RimN [Serratia odorifera DSM 4582]
          Length = 185

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+R L  +K+RP    LI   ++   +  + +   LS    
Sbjct: 18  IAYPTEAVFGLGCDPDSEQALRELLALKQRPWEKGLILIAAEYDQLLPYIADSQLSESQR 77

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPGP+T V+    TT    L T +  +   RV      ++L   +G PL   SA
Sbjct: 78  AAIFASWPGPVTWVIPAKPTTST--LLTGHFNSLAVRVSDHPLVQQLCREFGKPLVSTSA 135

Query: 141 NRSGQISITNVKHIL 155
           N SGQ    +   +L
Sbjct: 136 NLSGQEPCRSANEVL 150


>gi|269962637|ref|ZP_06176982.1| Sua5/YciO/YrdC family protein [Vibrio harveyi 1DA3]
 gi|269832560|gb|EEZ86674.1| Sua5/YciO/YrdC family protein [Vibrio harveyi 1DA3]
          Length = 186

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +  E L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 3   DNFEQVLEALQKGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 62

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L      WPGP T ++   ++  +    +    +   RV      +
Sbjct: 63  LLPYVDESQLTQEQLDKVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQ 120

Query: 126 KLIETYGHPLAIPSANRSG 144
           K+   +G PL   SAN +G
Sbjct: 121 KMCNAFGKPLTSTSANLTG 139


>gi|182682384|ref|YP_001830544.1| SUA5/yciO/yrdC domain-containing protein [Xylella fastidiosa M23]
 gi|182632494|gb|ACB93270.1| SUA5/yciO/yrdC domain [Xylella fastidiosa M23]
          Length = 209

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 5/190 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S+  +  L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   
Sbjct: 22  SMATTLTLSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVT 81

Query: 65  SDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           ++++ ++    +D LS   LH  +  WPGP T VL   ST   H ++  +   A      
Sbjct: 82  AELNTLQDWLDLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAH 140

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L   +   L   SAN +GQ      +  L  S+   +  I+DG    +   ++I 
Sbjct: 141 PLVSALCRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIR 199

Query: 182 NVQCEKKVRI 191
           + +    +R+
Sbjct: 200 DARSGHILRL 209


>gi|119505057|ref|ZP_01627133.1| putative translation factor (SUA5) [marine gamma proteobacterium
           HTCC2080]
 gi|119459039|gb|EAW40138.1| putative translation factor (SUA5) [marine gamma proteobacterium
           HTCC2080]
          Length = 208

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 16/198 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +R+A E L +G  IA PT++ Y L     D R    IRR+ ++        L+C   D+S
Sbjct: 17  VRQAVEILRSGGVIAYPTDSAYALGCRLGDKRALECIRRIRKLDDNHNFT-LVC--PDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFT 124
           ++  +A VD  +  L K   PGP T +L+         +HP      KT   RVP    T
Sbjct: 74  VLGAYAKVDNSAYRLIKNATPGPYTFILEATGEVPRRLLHP----RRKTVGVRVPDNAIT 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L+  +  P+   +    G        + + +++  ++ L+IDGG    GLE T V   
Sbjct: 130 QALLAEFAEPIMSVTLQLPGDDYPLTDPYDIRTTLEHDVALVIDGGFC--GLEPTTVIDL 187

Query: 185 CEKKVRILRPGGLEIETL 202
                 +LR G  +I  L
Sbjct: 188 SADSYEVLREGLGDISRL 205


>gi|194435076|ref|ZP_03067314.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012]
 gi|194416683|gb|EDX32814.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012]
 gi|320182719|gb|EFW57605.1| putative ribosome maturation factor [Shigella boydii ATCC 9905]
 gi|332085429|gb|EGI90595.1| ribosome maturation factor [Shigella boydii 5216-82]
 gi|332086276|gb|EGI91432.1| ribosome maturation factor [Shigella dysenteriae 155-74]
          Length = 190

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    STT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPSTT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|146313348|ref|YP_001178422.1| putative ribosome maturation factor [Enterobacter sp. 638]
 gi|145320224|gb|ABP62371.1| translation factor SUA5 [Enterobacter sp. 638]
          Length = 200

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   +K +     L+    
Sbjct: 33  IAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQLKPYIDDSMLTEQQR 92

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
                 WPGP+T V   L +T      T    +   RV       +L ET+G PL   SA
Sbjct: 93  NTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVELCETFGKPLVSTSA 150

Query: 141 NRSG 144
           N +G
Sbjct: 151 NLTG 154


>gi|330817634|ref|YP_004361339.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3]
 gi|327370027|gb|AEA61383.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3]
          Length = 211

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  IA+PT++ Y LA    + TA+ R+ +I+       L   V D+S + 
Sbjct: 17  VRQAVEIVKQGGVIAMPTDSSYALACHLDDKTAVERVRKIRGLDDKQLLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++E
Sbjct: 77  NFAMVDNHQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAVLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G PL   +          N    +   + K++ L+IDGG       STIV++  +  V
Sbjct: 135 TLGQPLLGTTLILPPDSDPLNDPEEIRERLEKQVDLVIDGGACPRE-PSTIVDLTGDAPV 193

Query: 190 RI------LRPGGLEIE 200
            +      L P GL  E
Sbjct: 194 LVRAGRGSLEPFGLSAE 210


>gi|326800728|ref|YP_004318547.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
 gi|326551492|gb|ADZ79877.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
          Length = 235

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLICH-VSD 66
           A+ +    L  G  I  PT+TVYG+  D  N  AI    R+  IK   A    IC+ ++D
Sbjct: 43  AIEQVVAVLKKGGIIIYPTDTVYGIGCDITNQKAIETLCRIRGIKPEKANLSFICYDLTD 102

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           I+   K   +D  +  L K   PGP T + +  ++  +  L ++N KT   RVP     +
Sbjct: 103 IAQYTK--PIDTATFRLLKKSLPGPFTYIFN--ASNQVPKLMSSNKKTVGIRVPDNNIAR 158

Query: 126 KLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++   G+P+   S +   +I   +    ++       + L+IDGG    G E++ V V 
Sbjct: 159 EIVRQLGNPIVSASIHDEDEILEYSTDPELIHEKFQNLVDLVIDGGYG--GNEASTV-VD 215

Query: 185 CEK-KVRILRPG 195
           C   +  ++R G
Sbjct: 216 CTSGEFDVIRQG 227


>gi|320333780|ref|YP_004170491.1| Sua5/YciO/YrdC/YwlC family protein [Deinococcus maricopensis DSM
           21211]
 gi|319755069|gb|ADV66826.1| Sua5/YciO/YrdC/YwlC family protein [Deinococcus maricopensis DSM
           21211]
          Length = 200

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 92/209 (44%), Gaps = 17/209 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS  D  AL +A   +  G  I   TETV+ LA  ++ P A+ RL   K RP   P    
Sbjct: 1   MSAEDQVALERARVAVLDGRLIGFATETVWALACAAQ-PDAVARLAAAKGRPEGKPFQVL 59

Query: 64  VSDISMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +D +       +D       L LA L WPGPLTLV           +S   +     RV
Sbjct: 60  CADPARAASFFRLDERLRARFLTLAPL-WPGPLTLVAPASPLAPAALVSNGRVGV---RV 115

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       ++   G  LA  S N SG+++ +  +  L+ ++      ++  G    GL S
Sbjct: 116 PDHVHAHAVLNAVGGALAASSLNLSGEVAASTFEQALAYALAD----VLLPGPDAAGLAS 171

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           T+V+++      +LR G +  + ++ A++
Sbjct: 172 TVVDLETGV---VLREGAVRADAVREALA 197


>gi|153834324|ref|ZP_01986991.1| protein YrdC [Vibrio harveyi HY01]
 gi|148869332|gb|EDL68346.1| protein YrdC [Vibrio harveyi HY01]
          Length = 185

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    +  +     
Sbjct: 11  LQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLPYIDESQ 70

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           L+   L      WPGP T ++   ++  +    +    +   RV      +K+   +G P
Sbjct: 71  LTQEQLDKVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128

Query: 135 LAIPSANRSGQ 145
           L   SAN +GQ
Sbjct: 129 LTSTSANLTGQ 139


>gi|42526970|ref|NP_972068.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola ATCC 35405]
 gi|41817394|gb|AAS11979.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola ATCC 35405]
          Length = 184

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 18/193 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  +L  A   L  G  I +PT+TVYG +     P    ++ +IKKR A    I  +   
Sbjct: 7   DPKSLETAASVLKKGEIIIVPTDTVYGFS--GIMPFTKEKIIKIKKRGAEKSFISLIEKP 64

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             + K+    P+   L  L WP PL++++                 T+ FR P   + + 
Sbjct: 65  QDIYKYTDT-PVPEILLNL-WPAPLSIIVK----------DKEGRGTSAFRCPDDVWLRN 112

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+   S N SG+  +++++ I+ S    ++ LI+DGG  K GL STIV++  +
Sbjct: 113 LIGKTGFPIYSTSVNYSGEPVLSDIRDII-SEFEDKVSLIVDGGEQK-GLSSTIVSL-TD 169

Query: 187 KKVRILRPGGLEI 199
           K+  I+R G L+I
Sbjct: 170 KEPCIIRQGALKI 182


>gi|227874645|ref|ZP_03992808.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35243]
 gi|227844854|gb|EEJ55000.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35243]
          Length = 224

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 23/174 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVD-PL 79
           + IPT+TVYG+A     P A+ RL   K R    P    VS +    S++++ A    P 
Sbjct: 31  LVIPTDTVYGIASVPFEPAAVERLQGAKGRGEDFPPPVLVSGVAALDSLLERPAIFGAPA 90

Query: 80  SLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC-GFTKKLIE 129
            L+     LA  FWPGPLT++         +P    NL     T   R P      +++E
Sbjct: 91  PLYEAARRLATAFWPGPLTII------ARANPRLGWNLGKTGGTIALRQPNHPVALQILE 144

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             G PLA+ SANR G    T++    ++    ++ + +D G S  G  STIVN+
Sbjct: 145 ATG-PLAVTSANRHGAPPATDISAA-TAYFWDKVAVYVDAGESPSGQPSTIVNL 196


>gi|15837521|ref|NP_298209.1| hypothetical protein XF0919 [Xylella fastidiosa 9a5c]
 gi|81547878|sp|Q9PEV9|RIMN_XYLFA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|9105840|gb|AAF83729.1|AE003931_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 187

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 5/183 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 7   LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
               +D LS   LH  +  WPGP T VL   ST   H ++  +   A           L 
Sbjct: 67  DWLDLDTLSPERLHEVQTSWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAHPLVSALC 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +   L   SAN +GQ      +  L  S+   +  I+DG    +   ++I + +    
Sbjct: 126 RAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHI 184

Query: 189 VRI 191
           +R+
Sbjct: 185 LRL 187


>gi|210634580|ref|ZP_03298176.1| hypothetical protein COLSTE_02098 [Collinsella stercoris DSM 13279]
 gi|210158765|gb|EEA89736.1| hypothetical protein COLSTE_02098 [Collinsella stercoris DSM 13279]
          Length = 220

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 91/208 (43%), Gaps = 14/208 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAV------DS----RNPTAIRRLYEIKKRPAM 57
           D   L  A + L AG    +PTETVYG+ V      DS     + T   R++ +K R   
Sbjct: 12  DEEQLASAAKRLLAGDLALLPTETVYGVGVAVNAYLDSGGLPGSETGYGRIFTLKHRDTS 71

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             +   V     + ++ +  P ++  LA   WPG LTLV+   +    H +  A+   A 
Sbjct: 72  QTVPWLVDGPDALDRYGASVPDAIRTLAAECWPGALTLVVPAAARVP-HFMRAADGTVAL 130

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
                   + LI   G PLA+ SAN  G  +  +   +    I + + L +D G +    
Sbjct: 131 RASASPVIQDLIRATGSPLAVTSANTHGYPAPASFAEV-EPRILEGVDLAVDAGETACRD 189

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204
            STIV V+    V ILR G L  ET+ R
Sbjct: 190 ASTIVAVRDGAPV-ILRQGALPAETIAR 216


>gi|260599602|ref|YP_003212173.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Cronobacter turicensis z3032]
 gi|260218779|emb|CBA34127.1| Putative ribosome maturation factor rimN [Cronobacter turicensis
           z3032]
          Length = 190

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---ASVDPLSL 81
           IA PTE V+G+  D  + TA++RL E+K+RP    LI   ++   +K +   A++ P   
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANFEQLKPYIDDAALTPEQR 82

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
                 WPGP+T V    ++T      T    +   RV        L E +G PL   SA
Sbjct: 83  EAVFACWPGPVTFVFPAKASTPR--WLTGRFDSLAVRVTNHPQVIALCEAFGKPLVSTSA 140

Query: 141 NRSGQISITNVKHILSS 157
           N SG       + +L+ 
Sbjct: 141 NLSGLEPCRTAQEVLAQ 157


>gi|212277721|sp|A4WF91|RIMN_ENT38 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 190

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   +K +     L+    
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQLKPYIDDSMLTEQQR 82

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
                 WPGP+T V   L +T      T    +   RV       +L ET+G PL   SA
Sbjct: 83  NTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVELCETFGKPLVSTSA 140

Query: 141 NRSG 144
           N +G
Sbjct: 141 NLTG 144


>gi|28199639|ref|NP_779953.1| hypothetical protein PD1768 [Xylella fastidiosa Temecula1]
 gi|81438360|sp|Q87AQ5|RIMN_XYLFT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288258|sp|B2I8S9|RIMN_XYLF2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|28057754|gb|AAO29602.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 187

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 5/183 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 7   LSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
               +D LS   LH  +  WPGP T VL   ST   H ++  +   A           L 
Sbjct: 67  DWLDLDTLSPERLHEVQASWPGPHTWVLP-ASTRAPHWITGHHNGLAVRISAHPLVSALC 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +   L   SAN +GQ      +  L  S+   +  I+DG    +   ++I + +    
Sbjct: 126 RAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGHI 184

Query: 189 VRI 191
           +R+
Sbjct: 185 LRL 187


>gi|323142784|ref|ZP_08077497.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT
           12066]
 gi|322417429|gb|EFY08050.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT
           12066]
          Length = 189

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + KA E L  G  +  PTE +YG++  + N  A+ R+ ++K+R +   LI  VS  
Sbjct: 2   DDPKIVKAAEILKQGGVVIAPTEGLYGVSCLASNDRAVERVIKVKERSSAKGLIVAVSSF 61

Query: 68  SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            M +       LS   +      WPGP T ++   +   +  L T        R     T
Sbjct: 62  EMAQSLIDFSKLSSGNIDFMLSMWPGPHTFIVP--AAKSVSSLVTGGRDNIALRFTAFST 119

Query: 125 -KKLIETYGHPLAIPSANRSGQ 145
            ++L E  G PL   SAN SGQ
Sbjct: 120 LQRLCELSGGPLISSSANISGQ 141


>gi|323493845|ref|ZP_08098963.1| Sua5/YciO/YrdC family protein [Vibrio brasiliensis LMG 20546]
 gi|323311979|gb|EGA65125.1| Sua5/YciO/YrdC family protein [Vibrio brasiliensis LMG 20546]
          Length = 185

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 6/140 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   KA   L  G  IA PTE V+G+  D  +P AI +L ++K+RP    LI   +    
Sbjct: 2   DNFDKALSALRNGEVIAYPTEGVFGVGCDPDSPQAIEKLLKLKQRPIEKGLILIAASYQQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     LS   L   +  WPGP+T V+    +  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLSAEQLQQVQKSWPGPVTWVMPC--SDKVSDWVSGQYDSIAVRVSDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQ 145
           K+   +G PL   SAN SGQ
Sbjct: 120 KMCNAFGKPLTSTSANLSGQ 139


>gi|296104309|ref|YP_003614455.1| hypothetical protein ECL_03972 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058768|gb|ADF63506.1| hypothetical protein ECL_03972 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 201

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 22/197 (11%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  + +PT+T Y LA D  N  A +++Y++KKR    PL   V++ +    + +VD 
Sbjct: 11  LKRGEVVLVPTDTNYALAADPWNIDACQKIYDLKKRERQKPLTLFVAEPAQAWDYIAVDK 70

Query: 79  LSLHLAKL-----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT---KKLIET 130
           +  H A L       PG L +V+        +P     LK     + C      +++I  
Sbjct: 71  VQ-HRAALDKLIGAMPGALNVVVPASDNVPQNPY----LKPESISLVCNHQSVLREVIAL 125

Query: 131 YGHPLAIPSANRSG-----QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +G PL + SAN SG      I I   +      +   +P +     +   + STIV++  
Sbjct: 126 FGRPLGMSSANLSGVESDCLIDIDAARQTFGDRVGYILPAVQRPVTT---VSSTIVSL-L 181

Query: 186 EKKVRILRPGGLEIETL 202
           EK+++ILR G ++I  +
Sbjct: 182 EKEIKILRAGDMDIMAM 198


>gi|255007792|ref|ZP_05279918.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis
           3_1_12]
 gi|313145497|ref|ZP_07807690.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134264|gb|EFR51624.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 204

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 13/195 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF----TKK 126
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P         +
Sbjct: 75  SEYAKVDNNIFKLMKRNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNHIIREIAR 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           L++       +P         IT+   ++      ++ L+IDGGI   G+E STIVN   
Sbjct: 132 LLDAPIMTTTLPHDEHEDIEYITD-PELIDEKFGDQVDLVIDGGIG--GIEPSTIVNC-T 187

Query: 186 EKKVRILRPGGLEIE 200
           + +V I+R G  E+E
Sbjct: 188 DGEVTIVRQGKGELE 202


>gi|91226311|ref|ZP_01261151.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 12G01]
 gi|269966992|ref|ZP_06181062.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 40B]
 gi|91189322|gb|EAS75601.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 12G01]
 gi|269828386|gb|EEZ82650.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 40B]
          Length = 185

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    +  +     
Sbjct: 11  LKQGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYDQLLPYIDESQ 70

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           L+   L      WPGP T ++   ++  +    +    +   RV      +K+   +G P
Sbjct: 71  LTEEQLQTVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128

Query: 135 LAIPSANRSG 144
           L   SAN SG
Sbjct: 129 LTSTSANLSG 138


>gi|58580201|ref|YP_199217.1| hypothetical protein XOO0578 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622196|ref|YP_449568.1| hypothetical protein XOO_0539 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574926|ref|YP_001911855.1| Sua5/YciO/YrdC family protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|75436872|sp|Q5H5D8|RIMN_XANOR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123523292|sp|Q2P833|RIMN_XANOM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288246|sp|B2SL46|RIMN_XANOP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|58424795|gb|AAW73832.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366136|dbj|BAE67294.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519378|gb|ACD57323.1| Sua5/YciO/YrdC family protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 187

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S + +++
Sbjct: 7   LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIKRRPVDKGVIVVTSRVDVLR 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P         WPGP T +L +  T       T        R+        L
Sbjct: 67  DWVDIDALAPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAHPVVAAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  +
Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALEPALLATIDGVVDGEVGALAQPTRIRDARSGQ 183

Query: 188 KVR 190
            +R
Sbjct: 184 ILR 186


>gi|99034957|ref|ZP_01314762.1| hypothetical protein Wendoof_01000418 [Wolbachia endosymbiont of
          Drosophila willistoni TSC#14030-0811.24]
          Length = 92

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 45/80 (56%)

Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
          +   L +  PTETVY LA ++ +  +I ++Y+IKKR    PL   VSDI  + K A V  
Sbjct: 9  IQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKE 68

Query: 79 LSLHLAKLFWPGPLTLVLDL 98
            + L   F PGP+T +L L
Sbjct: 69 RYIDLINHFSPGPITYILPL 88


>gi|88855317|ref|ZP_01129981.1| translation factor [marine actinobacterium PHSC20C1]
 gi|88815224|gb|EAR25082.1| translation factor [marine actinobacterium PHSC20C1]
          Length = 218

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 25/198 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           + IPT+TVYG+A D+  P A+++L + K R   +P    +  I  +   A+  P  +  L
Sbjct: 30  VVIPTDTVYGVAADAFQPDAVQKLIDAKGRTRQSPPPVLIPGIPTLDALAAEVPDEVRTL 89

Query: 84  AKLFWPGPLTLVLDL-----LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
              FWPG LT++L           D H        T   R+P       + +   PLA+ 
Sbjct: 90  VAEFWPGGLTIILPAQPSLSWDLGDTH-------GTVALRMPSSRIALELLSETGPLAVS 142

Query: 139 SANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC----EKKVRI 191
           SAN +G     S    + +L  S+     + +D G     L STIV+         K+RI
Sbjct: 143 SANSTGLPAARSAAEAQQMLGDSVS----VYLDEGEGG-ELASTIVDATGLLTEGGKLRI 197

Query: 192 LRPGGLEIETLKRAISVE 209
           +R G +  E +++ I  +
Sbjct: 198 VREGVIPSEAIRKLIGAD 215


>gi|302529791|ref|ZP_07282133.1| SUA5/YciO/YrdC/YwlC [Streptomyces sp. AA4]
 gi|302438686|gb|EFL10502.1| SUA5/YciO/YrdC/YwlC [Streptomyces sp. AA4]
          Length = 228

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 22/200 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D+ +  A++ L   K R    P+   V   S V      V P +  L
Sbjct: 42  VVLPTDTVYGIGADAFDSGAVQALLRAKNRGPDMPVGVLVGSWSTVDGLVLGVPPQARAL 101

Query: 84  AKLFWPGPLTLVLDLLSTTDIH-PLSTANL----KTACFRVPCG-FTKKLIETYGHPLAI 137
            + FWPG L++VL        H P    NL     T   R+P      +L+   G P+A+
Sbjct: 102 IEAFWPGDLSIVLP-------HAPSLQWNLGNSRGTVMLRMPLHPVALELLRDVG-PMAV 153

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN SG+   + V+      +   + + +DGG S   + S+IV++  +K + +LR G  
Sbjct: 154 SSANVSGRSPASTVEDA-QEQLGDSVSVYLDGGSSGETVASSIVDLTGDKPL-VLREG-- 209

Query: 198 EIETLKRAISVELEYCVDET 217
              T+ +A   E+    +ET
Sbjct: 210 ---TVTKAAIAEVIGVAEET 226


>gi|260804903|ref|XP_002597327.1| hypothetical protein BRAFLDRAFT_203412 [Branchiostoma floridae]
 gi|229282590|gb|EEN53339.1| hypothetical protein BRAFLDRAFT_203412 [Branchiostoma floridae]
          Length = 372

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +N +++  E + AG    +PT+TVY L      P A+ R Y  KK+    P+   +S +S
Sbjct: 205 ANGVKQIAELMKAGGICGMPTDTVYVLVAACNRPAAVERAYRTKKQAEERPMSIWISQLS 264

Query: 69  MVK-KHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTD-IHPLSTANLKTACFR 118
            ++       PL     K  WP  ++L         LD     D  H + T   ++   R
Sbjct: 265 QLEPAREEFGPLLWDFMKEVWPSSISLYYVHLPGPWLDRFGLGDSAHYIGTP--ESIAIR 322

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
           +P C     LI+  G P+A+ SAN SG+   T+   +L+
Sbjct: 323 IPDCTVATHLIDLVG-PIAVTSANPSGEADTTHHSQVLA 360


>gi|154492885|ref|ZP_02032511.1| hypothetical protein PARMER_02524 [Parabacteroides merdae ATCC
           43184]
 gi|154087190|gb|EDN86235.1| hypothetical protein PARMER_02524 [Parabacteroides merdae ATCC
           43184]
          Length = 186

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KACE + AG  I  PT+T++G+  D+ N  A++++YE+KKR     ++      + + 
Sbjct: 5   IQKACEIMQAGGIILYPTDTIWGIGCDATNEKAVQKVYELKKRTDNKAMLVLTDSSAKLS 64

Query: 72  KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            + S  P ++  L +       + +P    L  +LL       +   N +         F
Sbjct: 65  MYVSDMPDIAWDLIEVADKPLTIIYPHAKNLASNLLGEDGSVGIRVTNEE---------F 115

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           ++KL E +  PL   SAN SG+ S  N   + S SI   +  I+
Sbjct: 116 SRKLCERFRRPLVSTSANVSGEPSPGNFSEV-SDSIKNGVDYIV 158


>gi|28899809|ref|NP_799414.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837692|ref|ZP_01990359.1| protein YrdC [Vibrio parahaemolyticus AQ3810]
 gi|260362026|ref|ZP_05775031.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus K5030]
 gi|260876487|ref|ZP_05888842.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AN-5034]
 gi|260897456|ref|ZP_05905952.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus Peru-466]
 gi|260901347|ref|ZP_05909742.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AQ4037]
 gi|81726622|sp|Q87KE2|RIMN_VIBPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|28808061|dbj|BAC61298.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748982|gb|EDM59809.1| protein YrdC [Vibrio parahaemolyticus AQ3810]
 gi|308087914|gb|EFO37609.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus Peru-466]
 gi|308090420|gb|EFO40115.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AN-5034]
 gi|308109865|gb|EFO47405.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AQ4037]
 gi|308114150|gb|EFO51690.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus K5030]
 gi|328471159|gb|EGF42061.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 10329]
          Length = 185

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---AS 75
           L  G  IA PTE V+G+  D  NP AI++L ++K+RP    LI   +    +  +   + 
Sbjct: 11  LQQGEVIAYPTEGVFGVGCDPDNPDAIQKLLDLKQRPVEKGLILIAASYEQLLPYIDESQ 70

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           + P  L      WPGP T ++   ++  +    +    +   RV      +K+   +G P
Sbjct: 71  LTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQKMCNAFGKP 128

Query: 135 LAIPSANRSG 144
           L   SAN SG
Sbjct: 129 LTSTSANLSG 138


>gi|212213462|ref|YP_002304398.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212]
 gi|212011872|gb|ACJ19253.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212]
          Length = 186

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L  G  IA PTE VYGL  D  N  A+ +L  IKKR      I   S+  
Sbjct: 5   TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64

Query: 69  MVKKHAS-VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            V+     +DP +  LA++F  WPGP T      ++ +     T    T   RV      
Sbjct: 65  QVEPLTEPIDPKA--LARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLA 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           K L + +  PL   SAN+ G+  I +VK IL      +I  I++G + 
Sbjct: 121 KLLCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKILEGSLG 167


>gi|296170242|ref|ZP_06851835.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895118|gb|EFG74836.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 222

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 7/189 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           + +PT+TVYG+  D+ N  A+  L   K R    P+   V     ++      P     L
Sbjct: 33  VVMPTDTVYGIGADAFNSAAVTALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPGGARDL 92

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L+LV+    +     L  A   T   R+P      +L+   G P+A+ SAN 
Sbjct: 93  IRAFWPGALSLVVTQAPSLQWD-LGDAR-GTVMLRMPLHPVAIELLREVG-PMAVSSANV 149

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ +  +        + + + + +D G ++    STIV++      RILRPG +  E +
Sbjct: 150 SGRPAAVDAAEA-RDQLGELVDVYLDAGTAQQQAASTIVDLTGPAP-RILRPGPVSAERI 207

Query: 203 KRAISVELE 211
              + V+ E
Sbjct: 208 AEVLGVDAE 216


>gi|269216191|ref|ZP_06160045.1| Sua5/YciO/YrdC/YwlC family protein [Slackia exigua ATCC 700122]
 gi|269130450|gb|EEZ61528.1| Sua5/YciO/YrdC/YwlC family protein [Slackia exigua ATCC 700122]
          Length = 220

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 6/187 (3%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80
           G  +  PT+TVYG+ V   +      +Y IK+R A   +   V  +  + ++   V   +
Sbjct: 31  GKAVVFPTDTVYGIGVSVAHARTPDLIYGIKRRDAGKAIPWLVGSMDDLMRYGRDVPSYA 90

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             LA  FWPG LTL+  + ++  + P       T   R+P   +   +I   G P+A  S
Sbjct: 91  SALAHAFWPGALTLI--VRASAAVPPAFVGTGGTIALRMPDDEWALAVIRAVGCPMATSS 148

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN     +  +++  +S+ +   +   I    ++ G  STI +       RILR GG+  
Sbjct: 149 ANIQAH-TPPHLRSEVSAEVRSGVAACIGDERARSGRSSTIADCT-GAAFRILRAGGVSE 206

Query: 200 ETLKRAI 206
           E ++ A+
Sbjct: 207 EAMRDAV 213


>gi|289667887|ref|ZP_06488962.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 187

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I     + +++
Sbjct: 7   LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVMRLLEIKRRPVYKGVIVVAPSVDVLR 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P         WPGP T +L +  T       T        R+        L
Sbjct: 67  DWVDIDALEPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISTHPVVAAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  +
Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGEVGTLAQPTQIRDARSGQ 183

Query: 188 KVR 190
            +R
Sbjct: 184 ILR 186


>gi|307729238|ref|YP_003906462.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003]
 gi|307583773|gb|ADN57171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003]
          Length = 211

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 11/195 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S + 
Sbjct: 17  VKQAVQIINDGGVVALPTDSSYALACHLDDKNAVERLRRIRGLDEKQLLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++ 
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILG 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+ +  N    + + + K++ L+IDGG + +   ST++++  ++ V
Sbjct: 135 ELGQPLLGSTLILPGETAPLNDPEEIRARLEKQLDLVIDGG-ACVCEPSTVIDLTGDEPV 193

Query: 190 RI------LRPGGLE 198
            +      L P GLE
Sbjct: 194 LVRAGRGSLAPFGLE 208


>gi|13096287|pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli
 gi|13096288|pdb|1HRU|B Chain B, The Structure Of The Yrdc Gene Product From E.Coli
          Length = 188

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTXLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSG 144
            L + YG PL   SAN SG
Sbjct: 126 ALCQAYGKPLVSTSANLSG 144


>gi|302558379|ref|ZP_07310721.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475997|gb|EFL39090.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus
           Tu4000]
          Length = 215

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 45/219 (20%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58
           +  LR+A   +  G  + +PT+TVYG+  D+  P A+  L E K R      P +    N
Sbjct: 14  ATGLREAASAVRRGELVVLPTDTVYGIGADAFTPDAVGDLLEAKGRGRNMPSPVLIGSPN 73

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTA 110
            L   V+D S          ++  L   FWPG LTLV         DL  T         
Sbjct: 74  TLHGLVTDFSE---------MAWELVDAFWPGALTLVARHQPSLQWDLGDTR-------- 116

Query: 111 NLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLII 167
              T   R+P       + T   P+A+ SAN +G  +  +    + +L  S+     + +
Sbjct: 117 --GTVAVRMPLHPVAIELLTEVGPMAVSSANLTGHPAPEDCDAAQEMLGDSVS----VYL 170

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           DGG +   + S+IV+V     V +LR G +  E L++ +
Sbjct: 171 DGGPTPGNVPSSIVDVTRPVPV-LLREGAISPEELRKVV 208


>gi|18424373|ref|NP_568924.1| yrdC protein-related [Arabidopsis thaliana]
 gi|14190379|gb|AAK55670.1|AF378867_1 AT5g60590/muf9_240 [Arabidopsis thaliana]
 gi|15215871|gb|AAK91479.1| AT5g60590/muf9_240 [Arabidopsis thaliana]
 gi|332009968|gb|AED97351.1| DHBP synthase RibB-like alpha/beta domain-containing protein
           [Arabidopsis thaliana]
          Length = 164

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 77  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLD 97
            A+   L   L     PGP+TLVL 
Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQ 161


>gi|331654875|ref|ZP_08355874.1| protein YrdC [Escherichia coli M718]
 gi|331046890|gb|EGI18968.1| protein YrdC [Escherichia coli M718]
          Length = 205

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 22  GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 81

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 82  QLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 139

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
             L + YG PL   SAN SG      V  +
Sbjct: 140 VALCQAYGKPLVSTSANLSGLAPCRTVDEV 169


>gi|116626156|ref|YP_828312.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076]
 gi|116229318|gb|ABJ88027.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076]
          Length = 212

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 7/190 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL +A   +  G  +AIPT+ +Y L  D  N  A+  +++ K R     L   + D  M
Sbjct: 16  EALERAAAAVRRGKVVAIPTDALYTLVADPYNLRAVTGVFQAKGREPHRALPILIRDSMM 75

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGFTKKL 127
            ++ AS ++     LA+ FWPGPLT+++   +   +    +T  L     R P     KL
Sbjct: 76  AEELASELNNRFFILARRFWPGPLTVIVPAAAKIPLKVTGNTGRLALRHARSPVA--DKL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I     PL   SAN SG  +  +   +    +   + L++DGG + +G  ST V++  E 
Sbjct: 134 IALLNQPLISTSANISGHPTCHSGIDVF-GMMDGRVDLVLDGG-TCVGEGSTTVDI-TEP 190

Query: 188 KVRILRPGGL 197
             R+++ G +
Sbjct: 191 YWRMIKEGAI 200


>gi|325474033|gb|EGC77221.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola F0402]
          Length = 184

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 18/193 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  +L  A   L  G  I +PT+TVYG +     P    ++ +IKKR A    I  +   
Sbjct: 7   DPKSLETAASVLKKGEIIIVPTDTVYGFS--GIMPFTKEKIIKIKKRGAEKSFISLIEKP 64

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             + K+    P+   L  L WP PL++++                 T+ FR P   + + 
Sbjct: 65  QDIYKYTDT-PVPEILLNL-WPAPLSIIVR----------DKEGRGTSAFRCPDDVWLRN 112

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+   S N SG+  +++++ I+ S    ++ LI+DGG  K GL STIV++  +
Sbjct: 113 LIGLTGFPIYSTSVNYSGEPVLSDIRDII-SEFEDKVSLIVDGGEQK-GLSSTIVSL-TD 169

Query: 187 KKVRILRPGGLEI 199
           K+  I+R G L+I
Sbjct: 170 KEPCIIRQGALKI 182


>gi|189461485|ref|ZP_03010270.1| hypothetical protein BACCOP_02144 [Bacteroides coprocola DSM 17136]
 gi|189431819|gb|EDV00804.1| hypothetical protein BACCOP_02144 [Bacteroides coprocola DSM 17136]
          Length = 188

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KACE +  G  I  PT+TV+G+  D+ N  A++R+YEIK R     ++  V     
Sbjct: 4   DEIKKACEIMQKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKHRADSKAMLVLVDSPVK 63

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  + S V P++  L ++    P T++ D     ++ P   A   +   RV    F+K+L
Sbjct: 64  VDFYVSDVPPVAWDLIEMT-TKPFTIIYD--GARNLAPNLLAEDGSVGIRVTNETFSKEL 120

Query: 128 IETYGHPLAIPSANRSGQ 145
              +   +   SAN SGQ
Sbjct: 121 CFRFRKAIVSTSANISGQ 138


>gi|170769585|ref|ZP_02904038.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627]
 gi|170121642|gb|EDS90573.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627]
          Length = 190

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL ++K+RP    LI   ++  
Sbjct: 7   GDAIASAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLDLKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    STT      T    +   RV    
Sbjct: 67  QLKPY--IDDSMLTKAQRETIFSRWPGPVTFVFPAPSTT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
               L + YG PL   SAN SG      V+ +  +    E P++
Sbjct: 123 LVVALCQAYGKPLVSSSANLSGLPPCRTVEEV-RAQFGVEFPVV 165


>gi|15608441|ref|NP_215817.1| hypothetical protein Rv1301 [Mycobacterium tuberculosis H37Rv]
 gi|15840751|ref|NP_335788.1| hypothetical protein MT1340 [Mycobacterium tuberculosis CDC1551]
 gi|148661089|ref|YP_001282612.1| hypothetical protein MRA_1309 [Mycobacterium tuberculosis H37Ra]
 gi|148822519|ref|YP_001287273.1| hypothetical protein TBFG_11328 [Mycobacterium tuberculosis F11]
 gi|167969628|ref|ZP_02551905.1| hypothetical protein MtubH3_17041 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403143|ref|ZP_03415324.1| hypothetical protein Mtub0_05486 [Mycobacterium tuberculosis
           02_1987]
 gi|215410940|ref|ZP_03419748.1| hypothetical protein Mtub9_06325 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215445479|ref|ZP_03432231.1| hypothetical protein MtubT_05893 [Mycobacterium tuberculosis T85]
 gi|218753009|ref|ZP_03531805.1| hypothetical protein MtubG1_05995 [Mycobacterium tuberculosis GM
           1503]
 gi|253799653|ref|YP_003032654.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           1435]
 gi|254231559|ref|ZP_04924886.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364198|ref|ZP_04980244.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550309|ref|ZP_05140756.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554909|ref|ZP_06444119.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289745047|ref|ZP_06504425.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289757401|ref|ZP_06516779.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T85]
 gi|289761456|ref|ZP_06520834.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297633853|ref|ZP_06951633.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           4207]
 gi|297730840|ref|ZP_06959958.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           R506]
 gi|298524805|ref|ZP_07012214.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775473|ref|ZP_07413810.1| hypothetical protein TMAG_01936 [Mycobacterium tuberculosis
           SUMu001]
 gi|306781616|ref|ZP_07419953.1| hypothetical protein TMBG_01305 [Mycobacterium tuberculosis
           SUMu002]
 gi|306784025|ref|ZP_07422347.1| hypothetical protein TMCG_00932 [Mycobacterium tuberculosis
           SUMu003]
 gi|306788388|ref|ZP_07426710.1| hypothetical protein TMDG_01180 [Mycobacterium tuberculosis
           SUMu004]
 gi|306792715|ref|ZP_07431017.1| hypothetical protein TMEG_01198 [Mycobacterium tuberculosis
           SUMu005]
 gi|306797121|ref|ZP_07435423.1| hypothetical protein TMFG_02493 [Mycobacterium tuberculosis
           SUMu006]
 gi|306803001|ref|ZP_07439669.1| hypothetical protein TMHG_00486 [Mycobacterium tuberculosis
           SUMu008]
 gi|306807191|ref|ZP_07443859.1| hypothetical protein TMGG_01864 [Mycobacterium tuberculosis
           SUMu007]
 gi|306967390|ref|ZP_07480051.1| hypothetical protein TMIG_02976 [Mycobacterium tuberculosis
           SUMu009]
 gi|306971582|ref|ZP_07484243.1| hypothetical protein TMJG_03944 [Mycobacterium tuberculosis
           SUMu010]
 gi|307079296|ref|ZP_07488466.1| hypothetical protein TMKG_01801 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083865|ref|ZP_07492978.1| hypothetical protein TMLG_02639 [Mycobacterium tuberculosis
           SUMu012]
 gi|313658172|ref|ZP_07815052.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           V2475]
 gi|1722959|sp|Q10618|Y1301_MYCTU RecName: Full=Uncharacterized protein Rv1301/MT1340
 gi|1322425|emb|CAA97734.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880943|gb|AAK45602.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|124600618|gb|EAY59628.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134149712|gb|EBA41757.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505241|gb|ABQ73050.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148721046|gb|ABR05671.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253321156|gb|ACT25759.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289439541|gb|EFD22034.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289685575|gb|EFD53063.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289708962|gb|EFD72978.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289712965|gb|EFD76977.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T85]
 gi|298494599|gb|EFI29893.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216021|gb|EFO75420.1| hypothetical protein TMAG_01936 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325578|gb|EFP14429.1| hypothetical protein TMBG_01305 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331258|gb|EFP20109.1| hypothetical protein TMCG_00932 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335074|gb|EFP23925.1| hypothetical protein TMDG_01180 [Mycobacterium tuberculosis
           SUMu004]
 gi|308338882|gb|EFP27733.1| hypothetical protein TMEG_01198 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342496|gb|EFP31347.1| hypothetical protein TMFG_02493 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346430|gb|EFP35281.1| hypothetical protein TMGG_01864 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350301|gb|EFP39152.1| hypothetical protein TMHG_00486 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355002|gb|EFP43853.1| hypothetical protein TMIG_02976 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358950|gb|EFP47801.1| hypothetical protein TMJG_03944 [Mycobacterium tuberculosis
           SUMu010]
 gi|308362832|gb|EFP51683.1| hypothetical protein TMKG_01801 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366498|gb|EFP55349.1| hypothetical protein TMLG_02639 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720258|gb|EGB29357.1| hypothetical protein TMMG_01997 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902923|gb|EGE49856.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           W-148]
 gi|328459399|gb|AEB04822.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 217

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 7/203 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +  A   + AG  + +PT+TVYG+  D+ + +A+  L   K R    P+   V    
Sbjct: 14  SRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++    S+   +  L + FWPG L+LV+ + + +    L  A+  T   R+P      +
Sbjct: 74  TIEGLVYSMPDGARELIRAFWPGALSLVV-VQAPSLQWDLGDAH-GTVMLRMPLHPVAIE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A+ SAN SG     + +    S +   + + +D G S+    STIV++   
Sbjct: 132 LLREVG-PMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGA 189

Query: 187 KKVRILRPGGLEIETLKRAISVE 209
              R+LRPG +  E +   + V+
Sbjct: 190 TP-RVLRPGPVSTERIAEVLGVD 211


>gi|82545645|ref|YP_409592.1| ribosome maturation factor [Shigella boydii Sb227]
 gi|123558527|sp|Q31VZ4|RIMN_SHIBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|81247056|gb|ABB67764.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320187004|gb|EFW61716.1| putative ribosome maturation factor [Shigella flexneri CDC 796-83]
 gi|332090353|gb|EGI95451.1| ribosome maturation factor [Shigella boydii 3594-74]
          Length = 190

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|166154358|ref|YP_001654476.1| hypothetical protein CTL0392 [Chlamydia trachomatis 434/Bu]
 gi|166155233|ref|YP_001653488.1| hypothetical protein CTLon_0388 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335611|ref|ZP_07223855.1| hypothetical protein CtraL_02230 [Chlamydia trachomatis L2tet1]
 gi|165930346|emb|CAP03832.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu]
 gi|165931221|emb|CAP06786.1| conserved hypothetical protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 281

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 19/192 (9%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-- 74
           E + AG   A PT+TVYGL V      A +RL+ +K R +   L  +VS +  ++  A  
Sbjct: 8   ESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEAVAQQ 67

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGH 133
           S+   S  + + F PGPLTL+         H       KT  FR V     +++I+  G 
Sbjct: 68  SLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQKVG- 119

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P    SAN SG  S  +   +      ++I +I   G   IGLEST+++   E+++ + R
Sbjct: 120 PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVIDP--EERI-VYR 174

Query: 194 PGGL---EIETL 202
            G +   EIET+
Sbjct: 175 EGAISIAEIETV 186


>gi|88859929|ref|ZP_01134568.1| putative RNA binding protein with YrdC/RibB domain
           [Pseudoalteromonas tunicata D2]
 gi|88817923|gb|EAR27739.1| putative RNA binding protein with YrdC/RibB domain
           [Pseudoalteromonas tunicata D2]
          Length = 206

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  I  PT++ Y L     N TA+ R+  I+     + L     D+S + 
Sbjct: 17  IRQAIEVIQKGGVIVYPTDSGYALGCSIGNKTAMERIQRIRSLEKHHNLTLVCCDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A VD     L K   PG  T +     T ++   L     KT   RVP    T+ L+ 
Sbjct: 77  TYARVDNQMFRLVKNNTPGAYTFIFK--GTKEVPKRLLNDKKKTIGIRVPNHKITQALLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    GQ    +   ++ S + K++ LIIDGG   I   +T++++  +  V
Sbjct: 135 ELGEPIMSCSLILPGQEHTESDPEVIRSLLEKQVDLIIDGGYL-IEQATTVIDLS-DDSV 192

Query: 190 RILRPG 195
            ILR G
Sbjct: 193 EILRVG 198


>gi|225849196|ref|YP_002729360.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643744|gb|ACN98794.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 201

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 15/193 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L  A  ++  G  +   T+T+YG+  D+ N  A+ ++Y+IK RP   P I  +    
Sbjct: 14  SKNLFDAIPYIKEGKLVVAKTDTIYGILADALNKEAVEKIYKIKGRPEDKPFIILIPSSH 73

Query: 69  MVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-----CG 122
            +KK +   DP      K+     +T++ D+   T           +  FR+P       
Sbjct: 74  DLKKFNVKPDPQG---EKILNIKGITVIFDIEDPTGEFYYLHRGKNSLAFRIPDDPVFLS 130

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           F K+L    G P+  PSAN S      +++  +       I L ID G  +  + STIV 
Sbjct: 131 FLKEL----GRPVVAPSANPSDLQPAEDIEKAI-EYFKDSIDLYIDSGKVEKNVPSTIVK 185

Query: 183 VQCEKKVRILRPG 195
           V+   K++++R G
Sbjct: 186 VE-NGKIKVIREG 197


>gi|300921909|ref|ZP_07138064.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1]
 gi|301325152|ref|ZP_07218684.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1]
 gi|300421710|gb|EFK05021.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1]
 gi|300847984|gb|EFK75744.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1]
          Length = 190

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPITFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|170694767|ref|ZP_02885918.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M]
 gi|170140398|gb|EDT08575.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M]
          Length = 211

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 11/195 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S + 
Sbjct: 17  VKQAVQIINDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++ 
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILG 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+ +  N    + + + K++ L+IDGG + +   ST++++  ++ V
Sbjct: 135 ELGQPLLGSTLILPGETAPLNEPEEIRARLEKQLDLVIDGG-ACVCEPSTVIDLTGDEPV 193

Query: 190 RI------LRPGGLE 198
            +      L P GLE
Sbjct: 194 LVRAGRGSLAPFGLE 208


>gi|296159003|ref|ZP_06841831.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1]
 gi|295890878|gb|EFG70668.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1]
          Length = 211

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S + 
Sbjct: 17  VKQAVQIIKDGGVVALPTDSSYALACHLDDKEAVERLRRIRGLDEKQLLSLLVRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++E
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +    G+    N    + + + K++ L+IDGG
Sbjct: 135 ELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGG 175


>gi|167837135|ref|ZP_02464018.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           MSMB43]
          Length = 209

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  VKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +   S      N    + + + K+I L+IDGG
Sbjct: 135 ALGQPLLGTTLILSPDDEPLNDPEEIRARLEKQIDLVIDGG 175


>gi|288924800|ref|ZP_06418737.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae D17]
 gi|315607819|ref|ZP_07882812.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae ATCC 33574]
 gi|288338587|gb|EFC76936.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae D17]
 gi|315250288|gb|EFU30284.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae ATCC 33574]
          Length = 192

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 6/147 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMV 70
           ++ A E +  G  I  PT+TV+G+  D+ NP A+ ++Y+IK+R     LIC V SD  M 
Sbjct: 7   IKNAVECMRKGGVILYPTDTVWGIGCDATNPEAVAKVYQIKQRDDSKALICLVDSDARMQ 66

Query: 71  KKHASVDPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           K   ++  ++  L      G  P T++LD     ++ P   A   +   R+    F+K+L
Sbjct: 67  KYFRNIPSVAWELVDSTAEGGKPTTIILD--DAVNVAPNLIAEDGSLAVRITYEKFSKEL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154
                  +   SAN SGQ +  N   I
Sbjct: 125 CFRMQKAIVSTSANISGQPAAQNFCDI 151


>gi|218691569|ref|YP_002399781.1| putative ribosome maturation factor [Escherichia coli ED1a]
 gi|227883414|ref|ZP_04001219.1| ribosome maturation factor [Escherichia coli 83972]
 gi|300979819|ref|ZP_07174721.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1]
 gi|301046053|ref|ZP_07193232.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1]
 gi|331649079|ref|ZP_08350165.1| protein YrdC [Escherichia coli M605]
 gi|212277724|sp|Q8FD17|RIMN_ECOL6 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|218429133|emb|CAR10085.2| putative ribosome maturation factor [Escherichia coli ED1a]
 gi|227839558|gb|EEJ50024.1| ribosome maturation factor [Escherichia coli 83972]
 gi|281180317|dbj|BAI56647.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300301938|gb|EFJ58323.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1]
 gi|300409425|gb|EFJ92963.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1]
 gi|315292342|gb|EFU51694.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 153-1]
 gi|324009048|gb|EGB78267.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 57-2]
 gi|330909327|gb|EGH37841.1| YrdC subfamily, required for N6-threonylcarbamoyl adenosine t(6)A37
           modification in tRNA [Escherichia coli AA86]
 gi|331041577|gb|EGI13721.1| protein YrdC [Escherichia coli M605]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKRRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|160883231|ref|ZP_02064234.1| hypothetical protein BACOVA_01200 [Bacteroides ovatus ATCC 8483]
 gi|237719187|ref|ZP_04549668.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260171883|ref|ZP_05758295.1| putative translation factor [Bacteroides sp. D2]
 gi|293372316|ref|ZP_06618701.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f]
 gi|299148260|ref|ZP_07041322.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23]
 gi|315920195|ref|ZP_07916435.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156111456|gb|EDO13201.1| hypothetical protein BACOVA_01200 [Bacteroides ovatus ATCC 8483]
 gi|229451566|gb|EEO57357.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292632758|gb|EFF51351.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f]
 gi|298513021|gb|EFI36908.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23]
 gi|313694070|gb|EFS30905.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 187

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++       +V 
Sbjct: 5   IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     +  + W        PLT++       ++     A   +   RV    F+
Sbjct: 59  SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLASNLLAEDGSVGIRVTNEDFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           ++L + +   +   SAN SGQ    N   I
Sbjct: 117 RRLCQQFRKAIVSTSANVSGQPGAANFSEI 146


>gi|91784220|ref|YP_559426.1| Sua5/YciO/YrdC/YwlC family translation factor [Burkholderia
           xenovorans LB400]
 gi|91688174|gb|ABE31374.1| Sua5/YciO/YrdC/YwlC family translation factor [Burkholderia
           xenovorans LB400]
          Length = 211

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S + 
Sbjct: 17  VKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++E
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +    G+    N    + + + K++ L+IDGG
Sbjct: 135 ELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGG 175


>gi|320666395|gb|EFX33378.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O157:H7 str. LSU-61]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSG 144
             L + YG PL   SAN SG
Sbjct: 125 VALCQAYGKPLVSTSANLSG 144


>gi|302554166|ref|ZP_07306508.1| yrdC domain-containing protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471784|gb|EFL34877.1| yrdC domain-containing protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 215

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 29/210 (13%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----NP 59
             LR+A   +  G  + +PT+TVYG+  D+    A+  L E K R      P +    N 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFASEAVGDLLEAKGRGRNMPSPVLIGSPNT 74

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   V+D S          L+  L   FWPG LTLV     +       T    T   R+
Sbjct: 75  LHGLVTDFSE---------LAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVRM 123

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGL 176
           P       + T   P+A+ SAN +G  +  +    + +L  S+     + +DGG +   +
Sbjct: 124 PLHPVAIELLTEVGPMAVSSANLTGHPAPEDCDAAQEMLGDSVS----VYLDGGPTPGNV 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            S+IV+V  E   R+LR G +  + L++ +
Sbjct: 180 PSSIVDVTQEVP-RLLRAGAISADELRKVV 208


>gi|291515798|emb|CBK65008.1| translation factor SUA5 [Alistipes shahii WAL 8301]
          Length = 200

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 7/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++  + L+    I  PT++VY      R+P AI RL  I+ + +         +I+ V 
Sbjct: 15  LQRVVDALERDEIIIYPTDSVYAFGCSLRSPKAIERLRRIRGK-SEEKFTVVFENIAQVA 73

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++  VD     + K   PGP T V  L ++  I   +    +T   R+P     + ++  
Sbjct: 74  EYCRVDNAVFRILKRNLPGPFTFV--LAASARIPDKALERRRTIGVRIPASPVARAVVGA 131

Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            G P+   S     Q +  T    ++     +E+ L+IDGGI    + +T+V++  +   
Sbjct: 132 LGCPMITTSVKDDDQVVEYTTDPELIHERYGREVALVIDGGIGD-NVPTTVVDLTGDGP- 189

Query: 190 RILRPGGLEIE 200
            ILR G  E++
Sbjct: 190 EILREGKGELQ 200


>gi|15803810|ref|NP_289844.1| putative ribosome maturation factor [Escherichia coli O157:H7
           EDL933]
 gi|15833402|ref|NP_312175.1| ribosome maturation factor [Escherichia coli O157:H7 str. Sakai]
 gi|168752269|ref|ZP_02777291.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758510|ref|ZP_02783517.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769144|ref|ZP_02794151.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777860|ref|ZP_02802867.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783849|ref|ZP_02808856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786172|ref|ZP_02811179.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168802908|ref|ZP_02827915.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|195939830|ref|ZP_03085212.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805660|ref|ZP_03247997.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813608|ref|ZP_03254937.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819808|ref|ZP_03260128.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396523|ref|YP_002272739.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325662|ref|ZP_03441746.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795219|ref|YP_003080056.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224587|ref|ZP_05938868.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254519|ref|ZP_05947052.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str.
           FRIK966]
 gi|81765049|sp|Q8X8F8|RIMN_ECO57 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|12517909|gb|AAG58404.1|AE005555_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363621|dbj|BAB37571.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187767015|gb|EDU30859.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013856|gb|EDU51978.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188998860|gb|EDU67846.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354694|gb|EDU73113.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361748|gb|EDU80167.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189374185|gb|EDU92601.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189375257|gb|EDU93673.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208725461|gb|EDZ75062.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734885|gb|EDZ83572.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739931|gb|EDZ87613.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157923|gb|ACI35356.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209757398|gb|ACI77011.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|209757400|gb|ACI77012.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|209757402|gb|ACI77013.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|209757404|gb|ACI77014.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|209757406|gb|ACI77015.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|217321883|gb|EEC30307.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594619|gb|ACT73980.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|320191685|gb|EFW66335.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639587|gb|EFX09181.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O157:H7 str. G5101]
 gi|320645085|gb|EFX14101.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O157:H- str. 493-89]
 gi|320650396|gb|EFX18862.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O157:H- str. H 2687]
 gi|320655921|gb|EFX23841.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320661373|gb|EFX28788.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|326342531|gb|EGD66305.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           1044]
 gi|326344518|gb|EGD68267.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           1125]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSG 144
             L + YG PL   SAN SG
Sbjct: 125 VALCQAYGKPLVSTSANLSG 144


>gi|220904022|ref|YP_002479334.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
 gi|219868321|gb|ACL48656.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
          Length = 223

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
          L++A   L  G  +  PTET YGL   + +  A+ R+Y+ K+RP   PL    +    V+
Sbjct: 10 LQEAVACLRGGHALIFPTETFYGLGCLASDAAAVSRIYQFKRRPVHKPLPLLAASEGQVR 69

Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96
            A ++ +   L + FWPGPLT++L
Sbjct: 70 SVAQLEAMPEPL-RAFWPGPLTVLL 93


>gi|291284641|ref|YP_003501459.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|290764514|gb|ADD58475.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O55:H7 str.
           CB9615]
          Length = 205

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 22  GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 81

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 82  QLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 139

Query: 125 KKLIETYGHPLAIPSANRSG 144
             L + YG PL   SAN SG
Sbjct: 140 VALCQAYGKPLVSTSANLSG 159


>gi|74313802|ref|YP_312221.1| putative ribosome maturation factor [Shigella sonnei Ss046]
 gi|170683354|ref|YP_001745545.1| putative ribosome maturation factor [Escherichia coli SMS-3-5]
 gi|191169298|ref|ZP_03031047.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A]
 gi|191174443|ref|ZP_03035944.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11]
 gi|193066486|ref|ZP_03047530.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22]
 gi|193071546|ref|ZP_03052455.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019]
 gi|209920748|ref|YP_002294832.1| putative ribosome maturation factor [Escherichia coli SE11]
 gi|218555840|ref|YP_002388753.1| putative ribosome maturation factor [Escherichia coli IAI1]
 gi|218560344|ref|YP_002393257.1| ribosome maturation factor [Escherichia coli S88]
 gi|218696975|ref|YP_002404642.1| putative ribosome maturation factor [Escherichia coli 55989]
 gi|256020641|ref|ZP_05434506.1| putative ribosome maturation factor [Shigella sp. D9]
 gi|260846080|ref|YP_003223858.1| putative ribosome maturation factor [Escherichia coli O103:H2 str.
           12009]
 gi|260857403|ref|YP_003231294.1| putative ribosome maturation factor [Escherichia coli O26:H11 str.
           11368]
 gi|260870026|ref|YP_003236428.1| putative ribosome maturation factor [Escherichia coli O111:H- str.
           11128]
 gi|300822914|ref|ZP_07103050.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7]
 gi|300903531|ref|ZP_07121453.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1]
 gi|300918257|ref|ZP_07134861.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1]
 gi|300935280|ref|ZP_07150291.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1]
 gi|300973962|ref|ZP_07172369.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1]
 gi|301305492|ref|ZP_07211584.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1]
 gi|306816375|ref|ZP_07450513.1| putative ribosome maturation factor [Escherichia coli NC101]
 gi|307315139|ref|ZP_07594722.1| SUA5/yciO/yrdC domain protein [Escherichia coli W]
 gi|309794558|ref|ZP_07688980.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7]
 gi|331659573|ref|ZP_08360511.1| protein YrdC [Escherichia coli TA206]
 gi|331670112|ref|ZP_08370951.1| protein YrdC [Escherichia coli TA271]
 gi|331684925|ref|ZP_08385511.1| protein YrdC [Escherichia coli H299]
 gi|123616010|sp|Q3YWX6|RIMN_SHISS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277679|sp|B1LGN9|RIMN_ECOSM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277720|sp|Q1R650|RIMN_ECOUT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277723|sp|Q0TCH9|RIMN_ECOL5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277725|sp|A7ZSH1|RIMN_ECO24 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277737|sp|A1AGH4|RIMN_ECOK1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288264|sp|B2U2Q0|RIMN_SHIB3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|73857279|gb|AAZ89986.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|170521072|gb|ACB19250.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5]
 gi|190900653|gb|EDV60453.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A]
 gi|190905251|gb|EDV64889.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11]
 gi|192925867|gb|EDV80517.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22]
 gi|192955134|gb|EDV85628.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019]
 gi|209914007|dbj|BAG79081.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353707|emb|CAU99974.1| putative ribosome maturation factor [Escherichia coli 55989]
 gi|218362608|emb|CAR00234.1| putative ribosome maturation factor [Escherichia coli IAI1]
 gi|218367113|emb|CAR04887.1| putative ribosome maturation factor [Escherichia coli S88]
 gi|222034991|emb|CAP77734.1| Uncharacterized protein yrdC [Escherichia coli LF82]
 gi|257756052|dbj|BAI27554.1| predicted ribosome maturation factor [Escherichia coli O26:H11 str.
           11368]
 gi|257761227|dbj|BAI32724.1| predicted ribosome maturation factor [Escherichia coli O103:H2 str.
           12009]
 gi|257766382|dbj|BAI37877.1| predicted ribosome maturation factor [Escherichia coli O111:H- str.
           11128]
 gi|300308972|gb|EFJ63492.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1]
 gi|300404404|gb|EFJ87942.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1]
 gi|300414518|gb|EFJ97828.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1]
 gi|300459483|gb|EFK22976.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1]
 gi|300524680|gb|EFK45749.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7]
 gi|300839187|gb|EFK66947.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1]
 gi|305850771|gb|EFM51228.1| putative ribosome maturation factor [Escherichia coli NC101]
 gi|306905488|gb|EFN36023.1| SUA5/yciO/yrdC domain protein [Escherichia coli W]
 gi|307628317|gb|ADN72621.1| putative ribosome maturation factor [Escherichia coli UM146]
 gi|308121608|gb|EFO58870.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7]
 gi|312947833|gb|ADR28660.1| putative ribosome maturation factor [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315062574|gb|ADT76901.1| predicted ribosome maturation factor [Escherichia coli W]
 gi|315255866|gb|EFU35834.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 85-1]
 gi|315284583|gb|EFU44028.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 110-3]
 gi|315297148|gb|EFU56428.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 16-3]
 gi|320173927|gb|EFW49103.1| putative ribosome maturation factor [Shigella dysenteriae CDC
           74-1112]
 gi|320199470|gb|EFW74060.1| putative ribosome maturation factor [Escherichia coli EC4100B]
 gi|323154120|gb|EFZ40323.1| ribosome maturation factor [Escherichia coli EPECa14]
 gi|323162961|gb|EFZ48796.1| ribosome maturation factor [Escherichia coli E128010]
 gi|323179182|gb|EFZ64756.1| ribosome maturation factor [Escherichia coli 1180]
 gi|323182762|gb|EFZ68163.1| ribosome maturation factor [Escherichia coli 1357]
 gi|323376839|gb|ADX49107.1| SUA5/yciO/yrdC domain protein [Escherichia coli KO11]
 gi|323944297|gb|EGB40373.1| yrdC domain-containing protein [Escherichia coli H120]
 gi|323950196|gb|EGB46078.1| yrdC domain-containing protein [Escherichia coli H252]
 gi|323954595|gb|EGB50378.1| yrdC domain-containing protein [Escherichia coli H263]
 gi|324014959|gb|EGB84178.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 60-1]
 gi|324017405|gb|EGB86624.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 117-3]
 gi|324116328|gb|EGC10248.1| yrdC domain-containing protein [Escherichia coli E1167]
 gi|331052788|gb|EGI24821.1| protein YrdC [Escherichia coli TA206]
 gi|331062174|gb|EGI34094.1| protein YrdC [Escherichia coli TA271]
 gi|331077296|gb|EGI48508.1| protein YrdC [Escherichia coli H299]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|304405647|ref|ZP_07387306.1| SUA5/yciO/yrdC domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304345686|gb|EFM11521.1| SUA5/yciO/yrdC domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 216

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            RKA E +  G  +  P++T   L ++     AI R + IK RPA + L     +    K
Sbjct: 15  FRKAAECVVNGGIVIAPSDTNLALTLNPWKDDAIERAFAIKNRPATSALTLFFLEPGEWK 74

Query: 72  KHA-SVDP-LSLHLAKLFWPGPLTLVL-DLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            +A + DP L    A  FWPGPL ++L    S +D      + +   C   P    + ++
Sbjct: 75  DYAEAADPGLVQAFADAFWPGPLNIILPKKPSISDRMVCGGSTVALGCLSNPV--WRGMM 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILS-SSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +    P+A+ SAN SGQ     V   L+   +   +  I+ G        STI+++    
Sbjct: 133 KYTNMPVAMTSANLSGQADGVLVDLDLALRQVGGNVDYILKGEAQGTTKSSTIIDLTGTP 192

Query: 188 KVRILRPGGLEIETLKR 204
             RI R G +  E L +
Sbjct: 193 --RITRYGDVTREQLNQ 207


>gi|330720127|gb|EGG98531.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC2047]
          Length = 182

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 6/181 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  +A PTE V+GL  D  N  A+R+L  +K+RP    LI   + I   +
Sbjct: 6   LHNAVVALRNGELVAYPTEAVWGLGCDPMNEAAVRKLLNLKRRPVEKGLILVAASIKQFE 65

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            + S   L   H  +  WPG  T V+ +  T       T    +   RV      +KL +
Sbjct: 66  PYLSTINLEQRHQLEASWPGFQTWVVPVPDTVPY--WLTGQHSSIALRVSTHPLIQKLCQ 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +  PL   SAN +G +   + + +   S   +   I+ G +      S+I+++   K +
Sbjct: 124 AFAGPLVSTSANPAGHLPALSAEEV--HSYFDDQAFIVPGELGGADAPSSIIDLVTGKSL 181

Query: 190 R 190
           R
Sbjct: 182 R 182


>gi|26249867|ref|NP_755907.1| putative ribosome maturation factor [Escherichia coli CFT073]
 gi|26110295|gb|AAN82481.1|AE016767_241 Protein yrdC [Escherichia coli CFT073]
 gi|307555370|gb|ADN48145.1| Sua5/YciO/YrdC family protein [Escherichia coli ABU 83972]
          Length = 205

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 22  GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKRRPVDKGLILIAANYE 81

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 82  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 137

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 138 LVVALCQAYGKPLVSTSANLSG 159


>gi|254167519|ref|ZP_04874371.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
 gi|197623782|gb|EDY36345.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
          Length = 180

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 18/185 (9%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
           P+ +PT+T+YGL +       I ++Y+IK R     +   V++I M+ K A + P +  L
Sbjct: 12  PVVMPTDTLYGLCMSIDG--DINKIYKIKGRSVEKKIPVGVANIEMMGKIAEITPEAEKL 69

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
            + F PGPLTLV   L    I  L      T   R+P    T  L+E  G P+ + SAN 
Sbjct: 70  IRAFMPGPLTLV---LRNKGIKWLG----DTVAVRIPAHTLTIYLMEKIG-PITLTSANI 121

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+        ++  ++  ++   +D G   +G  STI+ +     V ++R G + + ++
Sbjct: 122 SGE----KAPSVIEDTMKLDVKYRLDCG-RLMGKPSTIIKLI--DGVELIREGAIPMASI 174

Query: 203 KRAIS 207
            R + 
Sbjct: 175 MRVLE 179


>gi|329939828|ref|ZP_08289129.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoaurantiacus
           M045]
 gi|329301398|gb|EGG45293.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoaurantiacus
           M045]
          Length = 215

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 31/212 (14%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L E K R      P +    N
Sbjct: 14  ATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLEAKGRGRNMPTPVLIGSPN 73

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            L   V+D S          ++  L   FWPG LTLV     +       T    T   R
Sbjct: 74  TLHGLVTDFSE---------MAWELVDAFWPGALTLVAKHQPSLQWDLGETRG--TVAVR 122

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKI 174
           +P      +L+  +G P+A+ SAN +G  +  +    + +L  S+     + +DGG +  
Sbjct: 123 MPLHPVAIELLTEFG-PMAVSSANLTGHPAPEDCDAAQEMLGDSVS----VYLDGGPTPG 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            + S+IV+V     V +LR G L  E L++ +
Sbjct: 178 NVPSSIVDVTGRVPV-LLRQGALSPEELRKVV 208


>gi|255532909|ref|YP_003093281.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
 gi|255345893|gb|ACU05219.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
          Length = 206

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 18/201 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLIC----H 63
           A+ +  + L  G  I  PT+TVYGL  D  N  AI    RL  IK   A    IC    H
Sbjct: 14  AIEQIVDVLKKGGLIIYPTDTVYGLGCDITNQKAIEKICRLRGIKPEKANFSFICSDLRH 73

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +SD   +K    +D  +  + K   PGP T +L+  +  ++  L ++N KT   RVP   
Sbjct: 74  ISD--FIK---PIDTATFRVLKKALPGPFTFILN--ANNNVPKLLSSNKKTVGIRVPDND 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             ++++   G+P+   S     + I  +    ++       + ++IDGG       ST+V
Sbjct: 127 IAREIVRQLGNPILSTSIRDDDEVIEYSTDPELIHEKYENTVDMVIDGGFGD-NEASTVV 185

Query: 182 NVQCEKKVRILRPGGLEIETL 202
           +        I+R G  ++++ 
Sbjct: 186 DC-TSGDFEIIREGKGDLDSF 205


>gi|289664817|ref|ZP_06486398.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 187

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 9/184 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I     + +++
Sbjct: 7   LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVMRLLEIKRRPVDKGVIVVAPSVDVLR 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKK 126
               +D   P         WPGP T +   L  T+  P   T        R+        
Sbjct: 67  DWVDIDALEPARRQDVLASWPGPHTWI---LPVTERAPRWVTGEHDGLAVRISAHPVVAA 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  
Sbjct: 124 LCAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGEVGTLAQPTQIRDARSG 182

Query: 187 KKVR 190
           + +R
Sbjct: 183 QILR 186


>gi|218261693|ref|ZP_03476428.1| hypothetical protein PRABACTJOHN_02096 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223857|gb|EEC96507.1| hypothetical protein PRABACTJOHN_02096 [Parabacteroides johnsonii
           DSM 18315]
          Length = 186

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KACE + AG  I  PT+T++G+  D+ N  A++++YE+KKR     ++      + + 
Sbjct: 5   IQKACEIMQAGGIILYPTDTIWGIGCDATNEKAVQKVYELKKRMDNKAMLVLTDSSAKLS 64

Query: 72  KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            + S  P ++  L +       + +P    L  +LL       +   N +         F
Sbjct: 65  MYVSDMPDIAWDLIEVADKPLTIIYPHAKNLANNLLGEDGSVGIRVTNEE---------F 115

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           ++KL E +  PL   SAN SG+ S  N   + S SI   +  I+
Sbjct: 116 SRKLCERFRRPLVSTSANVSGEPSPGNFSEV-SDSIKNGVDYIV 158


>gi|30064604|ref|NP_838775.1| putative ribosome maturation factor [Shigella flexneri 2a str.
           2457T]
 gi|212288262|sp|Q0T019|RIMN_SHIF8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|30042863|gb|AAP18586.1| hypothetical protein S3538 [Shigella flexneri 2a str. 2457T]
 gi|313648795|gb|EFS13235.1| ribosome maturation factor [Shigella flexneri 2a str. 2457T]
 gi|332754003|gb|EGJ84376.1| ribosome maturation factor [Shigella flexneri 2747-71]
 gi|332766533|gb|EGJ96740.1| protein involved in synthesis of
           threonylcarbamoyladenosine-modified tRNA [Shigella
           flexneri 2930-71]
 gi|332998296|gb|EGK17897.1| ribosome maturation factor [Shigella flexneri VA-6]
 gi|333012315|gb|EGK31696.1| ribosome maturation factor [Shigella flexneri K-304]
 gi|333014510|gb|EGK33858.1| ribosome maturation factor [Shigella flexneri K-227]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSG 144
             L + YG PL   SAN SG
Sbjct: 125 VALCQAYGKPLVSTSANLSG 144


>gi|29655286|ref|NP_820978.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493]
 gi|153206968|ref|ZP_01945786.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918271|ref|ZP_02218357.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334]
 gi|212219510|ref|YP_002306297.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154]
 gi|81628337|sp|Q83AA2|RIMN_COXBU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|29542558|gb|AAO91492.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493]
 gi|120577041|gb|EAX33665.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918131|gb|EDR36735.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334]
 gi|212013772|gb|ACJ21152.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154]
          Length = 186

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 9/165 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L  G  IA PTE VYGL  D  N  A+ +L  IKKR      I   S+  
Sbjct: 5   TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64

Query: 69  MVKKHAS-VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            V+     +DP +  LA++F  WPGP T      ++ +     T    T   RV      
Sbjct: 65  QVEPLTEPIDPKA--LARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLA 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           K L + +  PL   SAN+ G+  I +VK IL      +I  I++G
Sbjct: 121 KLLCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKILEG 164


>gi|300815507|ref|ZP_07095732.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1]
 gi|300532399|gb|EFK53461.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1]
 gi|323164847|gb|EFZ50638.1| ribosome maturation factor [Shigella sonnei 53G]
 gi|323173920|gb|EFZ59548.1| ribosome maturation factor [Escherichia coli LT-68]
          Length = 172

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|300781420|ref|ZP_07091274.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium genitalium ATCC
           33030]
 gi|300533127|gb|EFK54188.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium genitalium ATCC
           33030]
          Length = 221

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 15/197 (7%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79
           AG  + IPT+TVYG+  D+ NP A  +L   K+R    P+   V   + ++         
Sbjct: 27  AGQCVVIPTDTVYGIGADAFNPDACAKLLATKRRGPDMPVPVLVGSWTTIQGLVREFTDT 86

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRVPCG-FTKKLIETYGHPLAI 137
           +  L + FWPG L++V+    +    P +  + + T   R+P      +L+   G P+A+
Sbjct: 87  AKTLVEAFWPGGLSIVVPEAPSL---PWNLGDTRGTVLLRMPLQPVAIELLRETG-PMAV 142

Query: 138 PSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
            SAN SG+   ++    ++    ++     + +DGG +++G  STI+++     + ILR 
Sbjct: 143 SSANISGEAPPVTALGARNQFGEAVQ----VYLDGGKAEVGEPSTIIDISGPSPI-ILRE 197

Query: 195 GGLEIETLKRAISVELE 211
           G +  E +   + +  E
Sbjct: 198 GAISPERIGGVLGMTPE 214


>gi|218550558|ref|YP_002384349.1| ribosome maturation factor [Escherichia fergusonii ATCC 35469]
 gi|218358099|emb|CAQ90746.1| putative ribosome maturation factor [Escherichia fergusonii ATCC
           35469]
 gi|323966244|gb|EGB61679.1| yrdC domain-containing protein [Escherichia coli M863]
 gi|323974765|gb|EGB69878.1| yrdC domain-containing protein [Escherichia coli TW10509]
 gi|324111961|gb|EGC05940.1| yrdC domain-containing protein [Escherichia fergusonii B253]
 gi|325498851|gb|EGC96710.1| ribosome maturation factor [Escherichia fergusonii ECD227]
 gi|327250931|gb|EGE62624.1| ribosome maturation factor [Escherichia coli STEC_7v]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDCMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|56480306|ref|NP_709070.2| putative ribosome maturation factor [Shigella flexneri 2a str. 301]
 gi|81722931|sp|Q83JD1|RIMN_SHIFL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|56383857|gb|AAN44777.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSG 144
             L + YG PL   SAN SG
Sbjct: 125 VALCQAYGKPLVSTSANLSG 144


>gi|16131163|ref|NP_417741.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89110728|ref|AP_004508.1| dsRNA-binding protein [Escherichia coli str. K-12 substr. W3110]
 gi|170018482|ref|YP_001723436.1| putative ribosome maturation factor [Escherichia coli ATCC 8739]
 gi|170082803|ref|YP_001732123.1| ribosome maturation factor [Escherichia coli str. K-12 substr.
           DH10B]
 gi|194440014|ref|ZP_03072072.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1]
 gi|238902373|ref|YP_002928169.1| putative ribosome maturation factor [Escherichia coli BW2952]
 gi|253771894|ref|YP_003034725.1| ribosome maturation factor [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163210|ref|YP_003046318.1| putative ribosome maturation factor [Escherichia coli B str.
           REL606]
 gi|256025990|ref|ZP_05439855.1| putative ribosome maturation factor [Escherichia sp. 4_1_40B]
 gi|297517900|ref|ZP_06936286.1| putative ribosome maturation factor [Escherichia coli OP50]
 gi|300932175|ref|ZP_07147455.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1]
 gi|300946504|ref|ZP_07160770.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1]
 gi|300955320|ref|ZP_07167702.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1]
 gi|301021208|ref|ZP_07185242.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1]
 gi|301643898|ref|ZP_07243928.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1]
 gi|307139965|ref|ZP_07499321.1| putative ribosome maturation factor [Escherichia coli H736]
 gi|312972455|ref|ZP_07786629.1| ribosome maturation factor [Escherichia coli 1827-70]
 gi|2851671|sp|P45748|RIMN_ECOLI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=Ribosome maturation factor RimN;
           AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277674|sp|B1X6D5|RIMN_ECODH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277678|sp|B1IQ17|RIMN_ECOLC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277722|sp|A8A587|RIMN_ECOHS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|2367210|gb|AAC76307.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85676759|dbj|BAE78009.1| dsRNA-binding protein [Escherichia coli str. K12 substr. W3110]
 gi|169753410|gb|ACA76109.1| SUA5/yciO/yrdC domain [Escherichia coli ATCC 8739]
 gi|169890638|gb|ACB04345.1| predicted ribosome maturation factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|194421066|gb|EDX37095.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1]
 gi|238863080|gb|ACR65078.1| predicted ribosome maturation factor [Escherichia coli BW2952]
 gi|242378809|emb|CAQ33601.1| protein involved in synthesis of
           threonylcarbamoyladenosine-modified tRNA [Escherichia
           coli BL21(DE3)]
 gi|253322938|gb|ACT27540.1| SUA5/yciO/yrdC domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975111|gb|ACT40782.1| predicted ribosome maturation factor [Escherichia coli B str.
           REL606]
 gi|253979267|gb|ACT44937.1| predicted ribosome maturation factor [Escherichia coli BL21(DE3)]
 gi|260447699|gb|ACX38121.1| SUA5/yciO/yrdC domain protein [Escherichia coli DH1]
 gi|299881616|gb|EFI89827.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1]
 gi|300317764|gb|EFJ67548.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1]
 gi|300453810|gb|EFK17430.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1]
 gi|300460059|gb|EFK23552.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1]
 gi|301077741|gb|EFK92547.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1]
 gi|309703694|emb|CBJ03035.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|310334832|gb|EFQ01037.1| ribosome maturation factor [Escherichia coli 1827-70]
 gi|315137858|dbj|BAJ45017.1| dsRNA-binding protein [Escherichia coli DH1]
 gi|315617086|gb|EFU97696.1| ribosome maturation factor [Escherichia coli 3431]
 gi|323934519|gb|EGB30927.1| yrdC domain-containing protein [Escherichia coli E1520]
 gi|323939296|gb|EGB35508.1| yrdC domain-containing protein [Escherichia coli E482]
 gi|323959567|gb|EGB55220.1| yrdC domain-containing protein [Escherichia coli H489]
 gi|323970086|gb|EGB65360.1| yrdC domain-containing protein [Escherichia coli TA007]
 gi|332345230|gb|AEE58564.1| ribosome maturation factor protein [Escherichia coli UMNK88]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSG 144
            L + YG PL   SAN SG
Sbjct: 126 ALCQAYGKPLVSTSANLSG 144


>gi|187928076|ref|YP_001898563.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J]
 gi|187724966|gb|ACD26131.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J]
          Length = 207

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E + AG  +A+PT++ Y LA    + +A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD     + K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G     N    +   + K++ L+IDGG
Sbjct: 123 VPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGG 175


>gi|260804891|ref|XP_002597321.1| hypothetical protein BRAFLDRAFT_203325 [Branchiostoma floridae]
 gi|229282584|gb|EEN53333.1| hypothetical protein BRAFLDRAFT_203325 [Branchiostoma floridae]
          Length = 382

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +N +++  E +  G    +PT+TVY L      P A+ R Y  KK+    P+   +S +S
Sbjct: 209 ANGVKQISELMKGGGICGMPTDTVYVLVAACNRPAAVERAYRTKKQAEERPMSIWISQLS 268

Query: 69  MVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KTACFRVP-C 121
            ++       PL     K  WP  ++LV+      D   L  +       ++   R+P C
Sbjct: 269 QLEPAREEFGPLLWDFMKEVWPSSISLVIKRGPWLDRFGLGDSARFIGTPESIAIRIPDC 328

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
                LI+  G P+A+ SAN SG+   T+   +L+
Sbjct: 329 TVATHLIDLVG-PIAVTSANPSGEADTTHHSQVLA 362


>gi|157162756|ref|YP_001460074.1| putative ribosome maturation factor [Escherichia coli HS]
 gi|331643978|ref|ZP_08345107.1| protein YrdC [Escherichia coli H736]
 gi|157068436|gb|ABV07691.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli HS]
 gi|331036272|gb|EGI08498.1| protein YrdC [Escherichia coli H736]
          Length = 205

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 23  DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82

Query: 70  VKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV       
Sbjct: 83  LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140

Query: 126 KLIETYGHPLAIPSANRSG 144
            L + YG PL   SAN SG
Sbjct: 141 ALCQAYGKPLVSTSANLSG 159


>gi|91212709|ref|YP_542695.1| putative ribosome maturation factor [Escherichia coli UTI89]
 gi|110643521|ref|YP_671251.1| putative ribosome maturation factor [Escherichia coli 536]
 gi|117625565|ref|YP_858888.1| putative ribosome maturation factor [Escherichia coli APEC O1]
 gi|157154846|ref|YP_001464750.1| putative ribosome maturation factor [Escherichia coli E24377A]
 gi|187733572|ref|YP_001881966.1| putative ribosome maturation factor [Shigella boydii CDC 3083-94]
 gi|188494830|ref|ZP_03002100.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638]
 gi|237703012|ref|ZP_04533493.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia sp. 3_2_53FAA]
 gi|293412701|ref|ZP_06655369.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293453601|ref|ZP_06664020.1| translation factor [Escherichia coli B088]
 gi|331674791|ref|ZP_08375548.1| protein YrdC [Escherichia coli TA280]
 gi|331679351|ref|ZP_08380021.1| protein YrdC [Escherichia coli H591]
 gi|332281837|ref|ZP_08394250.1| Sua5/YciO/YrdC family protein [Shigella sp. D9]
 gi|91074283|gb|ABE09164.1| protein YrdC [Escherichia coli UTI89]
 gi|110345113|gb|ABG71350.1| Sua5/YciO/YrdC family protein [Escherichia coli 536]
 gi|115514689|gb|ABJ02764.1| putative ribosome maturation factor [Escherichia coli APEC O1]
 gi|157076876|gb|ABV16584.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E24377A]
 gi|187430564|gb|ACD09838.1| Sua5/YciO/YrdC/YwlC family protein [Shigella boydii CDC 3083-94]
 gi|188490029|gb|EDU65132.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638]
 gi|226902276|gb|EEH88535.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia sp. 3_2_53FAA]
 gi|291321727|gb|EFE61158.1| translation factor [Escherichia coli B088]
 gi|291468348|gb|EFF10841.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492223|gb|ADE90979.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli IHE3034]
 gi|331067700|gb|EGI39098.1| protein YrdC [Escherichia coli TA280]
 gi|331072523|gb|EGI43848.1| protein YrdC [Escherichia coli H591]
 gi|332104189|gb|EGJ07535.1| Sua5/YciO/YrdC family protein [Shigella sp. D9]
          Length = 205

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 22  GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 81

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 82  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 137

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 138 LVVALCQAYGKPLVSTSANLSG 159


>gi|148238861|ref|YP_001224248.1| translation factor [Synechococcus sp. WH 7803]
 gi|147847400|emb|CAK22951.1| Possible translation factor [Synechococcus sp. WH 7803]
          Length = 199

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 13/139 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD---- 66
           A+ +  ++L  G    +PT+T+  LA     P++  +++ +K+RP   PLI   ++    
Sbjct: 10  AVDQIADYLRGGGAALLPTDTLPALAC---TPSSAAQIWTLKQRPQDKPLILMAAEAVEL 66

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           + +    A +D  +L LA+ +WPGPLTLVL        H        +   R+P C  T+
Sbjct: 67  LDLTTHIAKLD--ALPLAERYWPGPLTLVLPAAGALVNH--LNPGQDSLGMRIPACAATR 122

Query: 126 KLIETYGHPLAIPSANRSG 144
            L+   G PLA  SANRSG
Sbjct: 123 SLLARSG-PLATTSANRSG 140


>gi|110807131|ref|YP_690651.1| putative ribosome maturation factor [Shigella flexneri 5 str. 8401]
 gi|110616679|gb|ABF05346.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281602651|gb|ADA75635.1| putative ribosome maturation factor [Shigella flexneri 2002017]
          Length = 205

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 22  GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 81

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 82  QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 139

Query: 125 KKLIETYGHPLAIPSANRSG 144
             L + YG PL   SAN SG
Sbjct: 140 VALCQAYGKPLVSTSANLSG 159


>gi|237728617|ref|ZP_04559098.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter sp. 30_2]
 gi|226909239|gb|EEH95157.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter sp. 30_2]
          Length = 190

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++A+  A   L     IA PTE V+G+  D  + TA+ RL  +K+RP    LI   S+  
Sbjct: 7   TDAIAAAIAVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIASNFE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V   L+TT      T    +   RV    
Sbjct: 67  QLKPY--IDDSMLTDAQRDAVFARWPGPVTFVFPALATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|127514658|ref|YP_001095855.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella loihica PV-4]
 gi|212288223|sp|A3QJE8|RIMN_SHELP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|126639953|gb|ABO25596.1| translation factor SUA5 [Shewanella loihica PV-4]
          Length = 185

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 19/176 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE VYGL  D  N  AI++L ++K+RP    LI   SD + +  +     L+   L
Sbjct: 19  IAYPTEAVYGLGCDPDNDEAIQKLLDLKQRPWQKGLILVASDFNQLTPYIDSSVLTEAQL 78

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138
              F  WPGP T ++       +  L +    +   RV   P    + L +  G P+   
Sbjct: 79  QSAFDKWPGPFTFIMP--KRPGLSSLLSGQFDSLAVRVSNHPG--VQALCQALGKPIVST 134

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLE---STIVNVQCEKKVR 190
           SAN +G+      + ++     K     IDG ++  +G E   STI++V   K +R
Sbjct: 135 SANLTGEEPALTPEEVIRQFDGK-----IDGLVAGSLGAEPKPSTIIDVISGKILR 185


>gi|238758797|ref|ZP_04619971.1| Ribosomal modification protein RimN [Yersinia aldovae ATCC 35236]
 gi|238703094|gb|EEP95637.1| Ribosomal modification protein RimN [Yersinia aldovae ATCC 35236]
          Length = 190

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 10/127 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K +  VD  +L  A
Sbjct: 23  IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPY--VDDSALTDA 80

Query: 85  K---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
           +   +F  WPGP+T V+     T +    T +  +   RV      +KL   YG PL   
Sbjct: 81  QRETIFSVWPGPVTWVIPASPETPL--WLTGSFDSLAVRVSAHPLVQKLCSQYGKPLVST 138

Query: 139 SANRSGQ 145
           SAN SGQ
Sbjct: 139 SANLSGQ 145


>gi|224369573|ref|YP_002603737.1| hypothetical protein HRM2_24790 [Desulfobacterium autotrophicum
           HRM2]
 gi|223692290|gb|ACN15573.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 202

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 6/193 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L  G  IA PT+T YG+  D  N  AI ++Y+IK+R    P     +D+  + 
Sbjct: 15  ISQIVDALRQGGIIAYPTDTHYGIGCDIMNKKAIEKVYQIKQRSKNQPFSFICADLKHIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           ++A V   +    K   PGP T +L    +  +  +     KTA  RVP       + + 
Sbjct: 75  EYAKVSTFAYRNMKRLLPGPYTFILQ--GSKLVPKMMLTKRKTAGIRVPDNAIALAIAKE 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G+P+   SA         +   +L     + + L++DGG    G +S++V++  +    
Sbjct: 133 LGNPVLSTSATGPDDRPFED-PSLLHDWFGQRLELVVDGGPVP-GTDSSVVSL-IDDVPE 189

Query: 191 ILRPGGLEIETLK 203
           I+R G  ++   +
Sbjct: 190 IIRYGAGDVSLFE 202


>gi|149640125|ref|XP_001515015.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 341

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 35/208 (16%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++LR   + LD G    +PT+TVY LA   ++  AI ++Y+IK RP   P+   +S++ 
Sbjct: 129 TSSLRIIAKLLDDGGVCGVPTDTVYALAASCKHSEAIEKIYKIKDRPQDKPICIFISNLD 188

Query: 69  MVK-KHASVDPLSLHLAKLFWPGPLTLV---------------LDLLSTTDIHPLSTANL 112
            ++  +    PL        +PG +  +                D + T D         
Sbjct: 189 QLRAANPPFTPLLWDFMARVYPGSIGCIVKKGEWVKKLGVGAGFDRVGTKD--------- 239

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            +   RVP       L+E  G PLAI SAN SG+   T+ + ++S    K   ++ DG  
Sbjct: 240 -SIMIRVPDQTVMVHLVEMTG-PLAITSANPSGESDSTHHEMVISRLGHKLEGVLCDGES 297

Query: 172 SKIGLESTIVNVQC----EKKVRILRPG 195
            ++ L ST+VN  C    E  + ILR G
Sbjct: 298 DEV-LASTVVN--CLRIEEGTITILREG 322


>gi|292489809|ref|YP_003532699.1| hypothetical protein EAMY_3346 [Erwinia amylovora CFBP1430]
 gi|291555246|emb|CBA23517.1| Uncharacterized protein yrdC [Erwinia amylovora CFBP1430]
 gi|312173992|emb|CBX82245.1| Uncharacterized protein yrdC [Erwinia amylovora ATCC BAA-2158]
          Length = 190

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++L +  E L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D   
Sbjct: 8   DSLAQCVEQLAQSKVIAYPTEAVFGLGCDPDSEEAVMRLLALKQRPVEKGLILIAADYQQ 67

Query: 70  VKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +    + + LS    A++F  WPGP+T VL   STT      T    T   RV       
Sbjct: 68  LMPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGRFTTLAVRVSDHPDVI 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            L   +G PL   SAN SG     +   +L +   ++ P++
Sbjct: 126 ALCNAFGKPLVSTSANLSGLPPCRHAAEVL-AQFGRDFPVL 165


>gi|239928892|ref|ZP_04685845.1| hypothetical protein SghaA1_11775 [Streptomyces ghanaensis ATCC
           14672]
 gi|291437219|ref|ZP_06576609.1| translation factor SUA5 [Streptomyces ghanaensis ATCC 14672]
 gi|291340114|gb|EFE67070.1| translation factor SUA5 [Streptomyces ghanaensis ATCC 14672]
          Length = 215

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 27/210 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+  P A+  L   K R    P    +   +
Sbjct: 14  TTGLREAASAIRRGELVVLPTDTVYGIGADAFTPDAVADLLAAKGRGRTMPTPVLIGSPN 73

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFRV 119
            +    +    ++  L   FWPG LTLV         DL  T            T   R+
Sbjct: 74  TLHGLVTDFSEMAWELVDAFWPGALTLVARHQPSLQWDLGDTR----------GTVAVRM 123

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGL 176
           P       + T   P+A+ SAN +G  +  N    + +L  S+     + +DGG +   +
Sbjct: 124 PLHPVAIELLTDVGPMAVSSANLTGHPAPENCDAAQEMLGDSVS----VYLDGGPTPGNV 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            S+IV+V     V +LR G +  E L++ +
Sbjct: 180 PSSIVDVTRPVPV-LLREGAISPEELRKVV 208


>gi|15617088|ref|NP_240301.1| hypothetical protein BU494 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681840|ref|YP_002468226.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682395|ref|YP_002468779.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|11387305|sp|P57561|RIMN_BUCAI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|25305375|pir||C84987 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10039153|dbj|BAB13187.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219622128|gb|ACL30284.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624683|gb|ACL30838.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 175

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE+++GL  D  +  A+++L  +K R     LI   SD   +K + + + LS    
Sbjct: 8   IAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQIKMYVNENILSNKQK 67

Query: 85  K---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSA 140
           K     WPGP T +L     T      T    T   RV   F   KL   +G  +   SA
Sbjct: 68  KKIFFHWPGPFTFLLPAKPNTPY--WLTGKFNTVAVRVSAHFEIIKLCNAFGQAVVSTSA 125

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
           N S        + +      K+ PL ++G I      S I+N+   K +R +
Sbjct: 126 NISNMTPCFTSEEVF-KCFGKDFPL-LNGKIGNEKNPSKIINIINGKLIRYV 175


>gi|255690473|ref|ZP_05414148.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM
           17565]
 gi|260623922|gb|EEX46793.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM
           17565]
          Length = 187

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 27/156 (17%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC--------- 62
           ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++          
Sbjct: 5   IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVKVD 64

Query: 63  -HVSDISMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            +V D+  V       +  PL+     + + G   L  +LL+      +   N +     
Sbjct: 65  FYVQDVPAVAWDLIEVADKPLT-----IIYSGARNLATNLLAEDGSVGIRVTNEE----- 114

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
               F+++L + +   +   SAN SGQ    N   I
Sbjct: 115 ----FSQRLCQQFRKAIVSTSANVSGQPGAANFSEI 146


>gi|283480062|emb|CAY75978.1| Uncharacterized protein yrdC [Erwinia pyrifoliae DSM 12163]
          Length = 190

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M++  + DS  L +  E L     IA PTE V+GL  D  +  A+ RL  +K+RP    L
Sbjct: 1   MKMNPVVDS--LAQCVEQLAQSQVIAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGL 58

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I   +D   +    + + LS    A++F  WPGP+T VL   STT      T    T   
Sbjct: 59  ILIAADYQQLIPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTTP--GWLTGQFTTLAV 116

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
           RV        L   +G PL   SAN +G     +V  +L+ 
Sbjct: 117 RVSDHPDVIALCHAFGKPLVSTSANLTGLPPCRHVAEVLAQ 157


>gi|312887346|ref|ZP_07746947.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM
           18603]
 gi|311300149|gb|EFQ77217.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM
           18603]
          Length = 206

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 12/199 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLICHV 64
           +  ++ +  + L  G  I  PT+TVYGL  D  NP AI    ++  IK   A    IC+ 
Sbjct: 11  NEKSIDQVVQILKRGGLIIYPTDTVYGLGCDITNPKAIDAICKIRHIKPEKANFSFICY- 69

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
            D+S +  +   +D  +  + K   PGP T + +  + + +  L ++N KT   RVP   
Sbjct: 70  -DLSHISDYIKPIDNATYRVLKKALPGPFTFIFN--ANSHVPKLLSSNKKTVGIRVPDNN 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             +++++  G+P+   S     + I  +    ++       + L+IDGG     + ST+V
Sbjct: 127 IAREIVKALGNPILSSSIRDEDEIIEYSTDPELIHEKYEGLVDLVIDGGYGD-NVPSTVV 185

Query: 182 NVQCEKKVRILRPGGLEIE 200
           +        I+R G  ++E
Sbjct: 186 DCTT-GDFEIIREGKGDLE 203


>gi|332996764|gb|EGK16389.1| ribosome maturation factor [Shigella flexneri K-272]
          Length = 172

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCG 122
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV   P  
Sbjct: 67  QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP-- 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|227538437|ref|ZP_03968486.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241719|gb|EEI91734.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 206

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 12/196 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI---KKRPAMNPLICH-VSD 66
           A+++  + L  G  I  PT+TVYG+  D  N  AI R+ EI   K   A    IC+ ++D
Sbjct: 14  AIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGLKVDKANLSFICYDLTD 73

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           IS   K    D     + K   PGP T + +  ++  +  L ++  KT   RVP     +
Sbjct: 74  ISQYTK--PFDTSVFRVLKKALPGPFTFIFN--ASGQVPKLLSSKKKTVGIRVPDNHIVR 129

Query: 126 KLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++   G+P+   S      I   +    ++       + L+IDGG     + ST+V++ 
Sbjct: 130 EIVRVLGNPIVTTSIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGD-NVASTVVDL- 187

Query: 185 CEKKVRILRPGGLEIE 200
                 I+R G  ++E
Sbjct: 188 TNGDFEIVREGKGDLE 203


>gi|300112979|ref|YP_003759554.1| SUA5/yciO/yrdC domain-containing protein [Nitrosococcus watsonii
           C-113]
 gi|299538916|gb|ADJ27233.1| SUA5/yciO/yrdC domain protein [Nitrosococcus watsonii C-113]
          Length = 185

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   +  G  IA PTE V+GL  D R   AI R+ ++K R      I   +D + ++
Sbjct: 8   VRFAARIIHRGGVIAYPTEGVFGLGCDPRQKAAIERILQLKGRSVHKGFILIAADFTQLQ 67

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +  + PL+          WPGP+T +L   +  D+ P       T   RV        L
Sbjct: 68  PY--LLPLTASTRSRLEETWPGPVTWLLP--ARGDVPPWLRGRHDTLAVRVTAYPLAACL 123

Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDG 169
            +T GH L   SANR+G+    +   V+    +S+   +P I  G
Sbjct: 124 CQTAGHALVSTSANRAGRPPAQTTLQVRRSFGASLDYILPGITGG 168


>gi|297202392|ref|ZP_06919789.1| yrdC domain-containing protein [Streptomyces sviceus ATCC 29083]
 gi|197710087|gb|EDY54121.1| yrdC domain-containing protein [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L E K R      P +    N
Sbjct: 14  TTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVHDLLEAKGRGRNMPTPVLIGSPN 73

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            L   V+D S          L+  L   FWPG LTLV     +       T    T   R
Sbjct: 74  TLHGLVTDFSE---------LAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVR 122

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIG 175
           +P       + T   P+A+ SAN +G  S       + +L  S+     + +DGG +   
Sbjct: 123 MPLHPVAIELLTEVGPMAVSSANLTGHPSPETCDAAQEMLGDSVS----VYLDGGPTPGN 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           + S+IV+V  E  + +LR G +  + L++ +
Sbjct: 179 VPSSIVDVTREVPL-LLRAGAISADELRKVV 208


>gi|292900851|ref|YP_003540220.1| hypothetical protein EAM_3158 [Erwinia amylovora ATCC 49946]
 gi|291200699|emb|CBJ47832.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
          Length = 188

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++L +  E L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D   
Sbjct: 6   DSLAQCVEQLAQSKVIAYPTEAVFGLGCDPDSEEAVMRLLALKQRPVEKGLILIAADYQQ 65

Query: 70  VKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +    + + LS    A++F  WPGP+T VL   STT      T    T   RV       
Sbjct: 66  LMPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGRFTTLAVRVSDHPDVI 123

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            L   +G PL   SAN SG     +   +L +   ++ P++
Sbjct: 124 ALCNAFGKPLVSTSANLSGLPPCRHAAEVL-AQFGRDFPVL 163


>gi|188993332|ref|YP_001905342.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735092|emb|CAP53304.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           campestris]
          Length = 191

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S + +++
Sbjct: 11  LDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQ 70

Query: 72  KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +  L S  L  +   WPGP T +L +  T       T +      R+        L
Sbjct: 71  DWIDIAALGSEQLTAVLAQWPGPHTWILPV--TAQAPRWVTGDHDGLAVRISAHPVVAAL 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            + +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  +
Sbjct: 129 CKAWGAPLVSTSANLAGEPPARS-RAALDPALLARIDGVLDGEVGGLAQPTPIRDARTGQ 187

Query: 188 KVR 190
            +R
Sbjct: 188 ILR 190


>gi|251788008|ref|YP_003002729.1| SUA5/yciO/yrdC domain-containing protein [Dickeya zeae Ech1591]
 gi|247536629|gb|ACT05250.1| SUA5/yciO/yrdC domain protein [Dickeya zeae Ech1591]
          Length = 190

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D   ++ +  +  LS    
Sbjct: 23  IAYPTEAVFGLGCDPDSEMAVERLLALKQRPREKGLILIAADFRQLEPYVEMAALSDAQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPGP+T V+   + T      T    +   RV      ++L   +G PL   SA
Sbjct: 83  QTIFTTWPGPVTWVIP--AKTSTPDWLTGRFNSLAVRVSDHPLVRQLCLAFGKPLVSTSA 140

Query: 141 NRSGQISITNVKHIL 155
           N +GQ     V  ++
Sbjct: 141 NLTGQPPCRTVSEVV 155


>gi|166713746|ref|ZP_02244953.1| hypothetical protein Xoryp_20475 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 187

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S + +++
Sbjct: 7   LDNAVATLTQGGVIAYPTEAVWGLGCDPRREAAVLRLLEIKRRPVDKGVIVVTSSVDVLR 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P         WPGP T +L +  T       T        R+        L
Sbjct: 67  DWVDIDALAPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAHPVVAAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    +    L  ++   I  ++DG +  +   + I + +  +
Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-HAALDPALLATIDGVVDGEVGALAQPTRIRDARSGQ 183

Query: 188 KVR 190
            +R
Sbjct: 184 ILR 186


>gi|21233184|ref|NP_639101.1| hypothetical protein XCC3756 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770124|ref|YP_244886.1| hypothetical protein XC_3826 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|81303924|sp|Q4UQ07|RIMN_XANC8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|81792557|sp|Q8P4F2|RIMN_XANCP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288259|sp|B0RWR5|RIMN_XANCB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|21115034|gb|AAM43013.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575456|gb|AAY50866.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 187

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S + +++
Sbjct: 7   LDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVLQ 66

Query: 72  KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +  L S  L  +   WPGP T +L +  T       T +      R+        L
Sbjct: 67  DWIDIAALGSEQLTAVLAQWPGPHTWILPV--TAQAPRWVTGDHDGLAVRISAHPVVAAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            + +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  +
Sbjct: 125 CKAWGAPLVSTSANLAGEPPARS-RAALDPALLARIDGVLDGEVGGLAQPTPIRDARTGQ 183

Query: 188 KVR 190
            +R
Sbjct: 184 ILR 186


>gi|187924529|ref|YP_001896171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN]
 gi|187715723|gb|ACD16947.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN]
          Length = 211

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S + 
Sbjct: 17  VKQAVQIINDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++E
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAILE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+    N    +   + K++ L+ID G   +   ST++++   + V
Sbjct: 135 ELGQPLLGSTLIMPGETQPLNDPEEIRERLEKQLDLVIDSGPC-VCEPSTVIDLTGAEPV 193

Query: 190 RILRPG 195
            ++RPG
Sbjct: 194 -LVRPG 198


>gi|290957363|ref|YP_003488545.1| hypothetical protein SCAB_28871 [Streptomyces scabiei 87.22]
 gi|260646889|emb|CBG69986.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 215

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 25/209 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58
           +  LR+A   +  G  + +PT+TVYG+  D+    A+  L E K R      P +    N
Sbjct: 14  ATGLREAASAVRRGELVVLPTDTVYGIGADAFTAEAVADLLEAKGRGRSMPTPVLIGSPN 73

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            L   V+D S          ++  L   FWPG LTLV     +       T    T   R
Sbjct: 74  TLHGLVTDFS---------EMAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVR 122

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE- 177
           +P       + T   P+A+ SAN +G  +  N      + +   + + +DGG +  G+E 
Sbjct: 123 MPLHPVAIELLTEVGPMAVSSANLTGHPAPENCDAA-EAMLGDSVSVYLDGGPTP-GIEP 180

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206
           S+IV+V  +  V +LR G L  E L++ +
Sbjct: 181 SSIVDVTGKVPV-LLRAGALSAEELRKVV 208


>gi|257457519|ref|ZP_05622686.1| Sua5/YciO/YrdC/YwlC family protein [Treponema vincentii ATCC 35580]
 gi|257444905|gb|EEV19981.1| Sua5/YciO/YrdC/YwlC family protein [Treponema vincentii ATCC 35580]
          Length = 182

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 29/188 (15%)

Query: 19  LDAGLPIAIPTETVYGLA-VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           L  G  I IPT+T+YG + +  +    I R   IK R    P I  +++ + + ++  + 
Sbjct: 18  LKKGNVIIIPTDTIYGFSGLIGKTAELIAR---IKGREENKPFIALIAEPADIYRYTELK 74

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
            +  H+  L WP PLTL++ L               T  FR P   + + ++   G  + 
Sbjct: 75  -IPEHILNL-WPAPLTLIVPL-----------KGQGTQAFRCPADEWLRSVVAAAGDAVY 121

Query: 137 IPSANRSGQISITNVKHILSSSICKE----IPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             S NRSG   +T++K     +ICKE    + L++DGG  + GL ST+V++      R+L
Sbjct: 122 STSVNRSGTSPLTDIK-----TICKEFEDSVGLVVDGGNLE-GLPSTLVDLTSGTP-RVL 174

Query: 193 RPGGLEIE 200
           R G + I+
Sbjct: 175 RQGSVVID 182


>gi|215488582|ref|YP_002331013.1| putative ribosome maturation factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968392|ref|ZP_07782602.1| ribosome maturation factor [Escherichia coli 2362-75]
 gi|215266654|emb|CAS11093.1| predicted ribosome maturation factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287217|gb|EFR15127.1| ribosome maturation factor [Escherichia coli 2362-75]
 gi|320195374|gb|EFW70001.1| putative ribosome maturation factor [Escherichia coli WV_060327]
 gi|323189112|gb|EFZ74396.1| ribosome maturation factor [Escherichia coli RN587/1]
          Length = 190

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCKAYGKPLVSTSANLSG 144


>gi|157372740|ref|YP_001480729.1| putative ribosome maturation factor [Serratia proteamaculans 568]
 gi|212288231|sp|A8GKG1|RIMN_SERP5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|157324504|gb|ABV43601.1| SUA5/yciO/yrdC domain [Serratia proteamaculans 568]
          Length = 189

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   +D + +  +  +D  +L   
Sbjct: 22  IAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILIAADYAQLTPY--IDDTALNEQ 79

Query: 82  HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
             A +F  WPGP+T V+   S T    L T    +   RV      ++L   +G PL   
Sbjct: 80  QRATMFASWPGPVTWVIPARSETSR--LLTGRFNSLAVRVSDHPLVQQLCRQFGKPLVST 137

Query: 139 SANRSGQ 145
           SAN SGQ
Sbjct: 138 SANLSGQ 144


>gi|261879276|ref|ZP_06005703.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bergensis DSM 17361]
 gi|270334108|gb|EFA44894.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bergensis DSM 17361]
          Length = 188

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T    ++ A E L  G  I  PT+TV+G+  D+ N  A+ ++Y IKKR     LIC V 
Sbjct: 1   MTREEDIKNAVEVLKQGGVILYPTDTVWGIGCDATNTEAVAKVYRIKKRDDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           SD  + +   +V  ++  L  +    P T++LD     ++ P   A   +   R+    F
Sbjct: 61  SDARLQRYVRNVPAIAWDLLDVA-DKPTTVILD--GAVNLAPNLIAEDGSIALRITSEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +K+L   +   L   SAN SG+    N K I
Sbjct: 118 SKELCYRFQKALVSTSANISGEPPAQNYKDI 148


>gi|167765264|ref|ZP_02437377.1| hypothetical protein BACSTE_03652 [Bacteroides stercoris ATCC
           43183]
 gi|167696892|gb|EDS13471.1| hypothetical protein BACSTE_03652 [Bacteroides stercoris ATCC
           43183]
          Length = 187

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++       +V 
Sbjct: 5   IKKACQVMREGGVILYPTDTIWGIGCDATNEDAVRRVYEIKQRQDSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     + ++ W        PLT++         + L  A   +   RV    F+
Sbjct: 59  SSVKVDFYVRDVPEVAWDLIDLADKPLTIIYSGARNLAANLL--AEDGSVGIRVTNEDFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           K+L + +   +   SAN SGQ S  N   I
Sbjct: 117 KRLCQQFRKAIVSTSANISGQPSPKNFSEI 146


>gi|312075017|ref|XP_003140229.1| yrdC domain-containing protein [Loa loa]
 gi|307764605|gb|EFO23839.1| yrdC domain-containing protein [Loa loa]
          Length = 232

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 23/201 (11%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T S  + +  +  ++G  +A+PT+T+YG+     N     +LY++K+R  + PL   VS+
Sbjct: 18  TCSATICRCLQIFESGGIVALPTDTLYGVVTTLSNSD---KLYKLKRRNHLKPLGLFVSN 74

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +  V++       +  L  L  PGP+TL+ +   +T +  +      T   R+P   F +
Sbjct: 75  VRDVQRWCRQTIDNSQLRTLL-PGPVTLIFE--RSTFLPRIFNPEHGTVGIRIPDHDFVR 131

Query: 126 KLIETYGH-PLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGI-----SKIG 175
            L+      PLA  SAN S      I I + K + S     E+ LIIDGG+      K+ 
Sbjct: 132 SLMTRLDDVPLAQTSANISNNQNNPICIEDFKDLWS-----ELDLIIDGGVILRPDGKVN 186

Query: 176 LE-STIVNVQCEKKVRILRPG 195
            E ST+VN+       I+R G
Sbjct: 187 HEGSTVVNLSIPGTYSIIRDG 207


>gi|21223722|ref|NP_629501.1| hypothetical protein SCO5362 [Streptomyces coelicolor A3(2)]
 gi|256785185|ref|ZP_05523616.1| hypothetical protein SlivT_11905 [Streptomyces lividans TK24]
 gi|289769078|ref|ZP_06528456.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24]
 gi|8568784|emb|CAB94533.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289699277|gb|EFD66706.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24]
          Length = 215

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 29/210 (13%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----NP 59
             LR+A   +  G  + +PT+TVYG+  D+    A+  L E K R      P +    N 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFAAEAVGDLLEAKGRGRNMPSPVLIGSPNT 74

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   V+D S          ++  L   FWPG LTLV     +       T    T   R+
Sbjct: 75  LHGLVTDFS---------EMAWELVDAFWPGALTLVAKHQPSLQWDLGETRG--TVAVRM 123

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGL 176
           P       + T   P+A+ SAN +G  +  +    + +L  S+     + +DGG +   +
Sbjct: 124 PLHPVAIELLTEVGPMAVSSANLTGHPAPEDCDAAQQMLGDSVS----VYLDGGPTPGIV 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            S+IV+V  E  V +LR G L  E L++ +
Sbjct: 180 PSSIVDVTREVPV-LLRAGALSAEELRKVV 208


>gi|269140536|ref|YP_003297237.1| putative ribosome maturation factor [Edwardsiella tarda EIB202]
 gi|267986197|gb|ACY86026.1| putative ribosome maturation factor [Edwardsiella tarda EIB202]
 gi|304560321|gb|ADM42985.1| hypothetical protein ETAF_2883 [Edwardsiella tarda FL6-60]
          Length = 189

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++L  A   L     IA PTE V+GL  D  + +A++ L ++K+RP    LI   +D  
Sbjct: 6   SDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSESAVQTLLDLKQRPWDKGLILIAADYQ 65

Query: 69  MVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +  +   + L     A +F  WPGP+T V+   +  D     T    T   RV      
Sbjct: 66  QLLPYVCDEALQGERRAAVFSRWPGPVTWVMP--ARADTPRWLTGRFSTLAVRVSAHPQV 123

Query: 125 KKLIETYGHPLAIPSANRSG 144
           ++L  +YG PL   SAN SG
Sbjct: 124 QQLCRSYGKPLVSTSANLSG 143


>gi|254381732|ref|ZP_04997096.1| translation factor SUA5 [Streptomyces sp. Mg1]
 gi|194340641|gb|EDX21607.1| translation factor SUA5 [Streptomyces sp. Mg1]
          Length = 214

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 27/207 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVS 65
           +  LR+A + +  G  + +PT+TVYG+  D+ +P A+ R+   K R    P   L+    
Sbjct: 14  AEGLREAADAVRRGELVVLPTDTVYGVGADAFSPDAVARVLRAKGRGRQMPSPVLVGSPD 73

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117
            +  +    SV   +  L   FWPG LTLV         DL  T            T   
Sbjct: 74  ALDGLVIDLSVQ--ARELIDAFWPGGLTLVARHEPSIKWDLGETH----------GTVAI 121

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       L++  G PLA+ SAN +G+ S  +    L + +   + + +D G +   +
Sbjct: 122 RMPAHPVAISLLDQTG-PLAVSSANLTGRPSPQDCDAAL-AMLGDTVAVYLDAGPTPADV 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            S+IV+V  +  V +LR G L    L+
Sbjct: 180 PSSIVDVTAKTPV-LLREGALSAARLR 205


>gi|119471686|ref|ZP_01614071.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonadales bacterium
           TW-7]
 gi|119445465|gb|EAW26752.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonadales bacterium
           TW-7]
          Length = 187

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 11/178 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  I  PTE V+GL  D  N  A+ +L  IK+RP    LI    +   + K+  VD 
Sbjct: 14  LNEGEVIVYPTEAVFGLGCDPDNQHAVEKLLAIKQRPVEKGLILIADNYGQLLKY--VDD 71

Query: 79  LSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYG 132
             + +   A +F  WP  +T V+    +T      T    T   RV    T K+L + +G
Sbjct: 72  AKVPMDKRADIFSSWPAAITWVMPAAKST--PKWLTGQFDTIAVRVTNHPTVKRLCQEFG 129

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +GQ ++ +++         ++   +D  +      STI +    K  R
Sbjct: 130 KPLVSTSANLTGQETVISIEQA-KEQFADQVGFYVDEPLGGNTQPSTIKDAMTGKVFR 186


>gi|167581361|ref|ZP_02374235.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           TXDOH]
          Length = 209

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDDPLNDPEEIRARLEKQVDLVIDGG 175


>gi|120555438|ref|YP_959789.1| Sua5/YciO/YrdC/YwlC family protein [Marinobacter aquaeolei VT8]
 gi|120325287|gb|ABM19602.1| Sua5/YciO/YrdC/YwlC family protein [Marinobacter aquaeolei VT8]
 gi|302608188|emb|CBW44443.1| putative RNA binding protein with YrdC/RibB domain [Marinobacter
           hydrocarbonoclasticus]
          Length = 207

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L  G  I  PT++ Y L     +  A  R+  I++    +       D+S + 
Sbjct: 17  IKQAVEILRKGGVIVYPTDSGYALGCHLGDKQAADRIKRIRRLDDKHNFTLVCRDLSDIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD     L K F PGP T +LD  S      +HP      ++   RVP     ++L
Sbjct: 77  VYAKVDNTQYRLLKNFTPGPYTFILDATSEVPRRLLHP----KRRSIGIRVPDNEIVREL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           +   G P+   +    G+       + +  ++  E+ LIIDGG    G+E+T V
Sbjct: 133 LGELGEPIMSSTLILPGETEPLTDPYDIRETLGHELDLIIDGGFC--GMEATTV 184


>gi|313207112|ref|YP_004046289.1| translation factor sua5 [Riemerella anatipestifer DSM 15868]
 gi|312446428|gb|ADQ82783.1| translation factor SUA5 [Riemerella anatipestifer DSM 15868]
 gi|315022490|gb|EFT35517.1| Sua5 YciO YrdC YwlC family protein [Riemerella anatipestifer RA-YM]
 gi|325335450|gb|ADZ11724.1| Sua5B [Riemerella anatipestifer RA-GD]
          Length = 182

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 5/184 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L +G  +  PT+T++GL  D+ NP AI+++Y+IKKR     LI  V     ++
Sbjct: 1   MQEIVEVLKSGGTVLYPTDTIWGLGCDATNPEAIQKIYKIKKREPHKSLIILVDTEKRLQ 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
               V  ++  +  L    P+T++ D         L   +       V   F +KLI   
Sbjct: 61  DLVEVPEMAWEIIDLS-EKPVTIIYDAPKGLP-KELLAEDGSIGIRLVKDAFCQKLIGKL 118

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--STIVNVQCEKKV 189
             PL   SAN SG  S      I S  +   +  +++    K+     S+++ +  + ++
Sbjct: 119 NAPLVSTSANFSGDKSPKQFSDI-SPKLIDAVDFVVEEQKDKVSQWAGSSVIRIWKDNRI 177

Query: 190 RILR 193
           ++LR
Sbjct: 178 KVLR 181


>gi|254387521|ref|ZP_05002760.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064]
 gi|294815092|ref|ZP_06773735.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064]
 gi|326443454|ref|ZP_08218188.1| hypothetical protein SclaA2_20413 [Streptomyces clavuligerus ATCC
           27064]
 gi|197701247|gb|EDY47059.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064]
 gi|294327691|gb|EFG09334.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064]
          Length = 215

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L E K R    P    +   +
Sbjct: 14  ATGLREATSAVRRGELVVLPTDTVYGIGADAFSSEAVSDLLEAKGRGRNMPTPVLIGSPN 73

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            +  H  V   S     L   FWPG LTLV     +       T    T   R+P     
Sbjct: 74  TL--HGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVRMPLHPVA 129

Query: 126 KLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + T   P+A+ SAN +G  +  +    + +L  S+     + +DGG +   + S+IV+
Sbjct: 130 IELLTETGPMAVSSANLTGHRAPEDCDAAQEMLGDSVS----VYLDGGPTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     V +LR G L+ E L++ +
Sbjct: 186 VTGRVPV-LLRAGALDAEELRKVV 208


>gi|300769987|ref|ZP_07079866.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762463|gb|EFK59280.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 206

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI---KKRPAMNPLICH- 63
           +  A+++  + L  G  I  PT+TVYG+  D  N  AI R+ EI   K   A    IC+ 
Sbjct: 11  NEKAIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGMKVDKANLSFICYD 70

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           ++DIS   K    D     + K   PGP T + +  ++  +  L ++  KT   RVP   
Sbjct: 71  LTDISQYTK--PFDTSVFRVLKKALPGPFTFIFN--ASGQVPKLLSSKKKTVGIRVPDNH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             ++++   G+P+   S      I   +    ++       + L+IDGG     + ST+V
Sbjct: 127 IVREIVRVLGNPIVTASIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGD-NVASTVV 185

Query: 182 NVQCEKKVRILRPGGLEIE 200
           ++       I+R G  ++E
Sbjct: 186 DLTG-GDFEIVREGKGDLE 203


>gi|209522310|ref|ZP_03270935.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. H160]
 gi|209497255|gb|EDZ97485.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. H160]
          Length = 211

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + ++ G  +A+PT++ Y LA    +  A+ RL  ++       L   V D+S + 
Sbjct: 17  VKQAAQIINDGGVVALPTDSTYALACRLDDKDAVERLRRVRGLDDKQLLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   +S  + KT   RVP    T  ++E
Sbjct: 77  NFAMVDNWQYRLLKSVTPGPYVFVLQ--ATKEVPRRVSHPSRKTIGLRVPDHAITLAILE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +    G+    N    + + + K++ L+IDGG
Sbjct: 135 ELGQPLLSTTLIMPGETEPLNDPEEIRALLEKQLDLVIDGG 175


>gi|116332436|ref|YP_802154.1| Sua5 family translation factor [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116126125|gb|ABJ77396.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 202

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 14/191 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + + L+ G+ I  PT+TVY L  DS++   + +LYE+K  P   PL      IS+   + 
Sbjct: 19  STKLLEGGIYI-FPTDTVYALVADSQSKLGVEKLYELKNIPKNQPLSLICPSISVASNY- 76

Query: 75  SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            ++ LS     L K   PGP T +            S    K    R+P   + + L++ 
Sbjct: 77  -IEYLSNEAFRLMKKITPGPFTFITRANKHLPRVSFSNQKEKQIGIRIPDAIYLQSLLKI 135

Query: 131 YGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           + +PL   S  AN    I +  ++ I  + +      I+DGGI K+ L STI+N+  ++ 
Sbjct: 136 HPNPLTSTSVFANDEFIIEVDLLEQIYGARVEG----IVDGGIVKMEL-STILNMTNDEM 190

Query: 189 VRILRPGGLEI 199
             I    G E 
Sbjct: 191 TIIREGKGFEF 201


>gi|238896779|ref|YP_002921524.1| putative ribosome maturation factor [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238549106|dbj|BAH65457.1| putative RNA-binding protein with unique protein fold [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 205

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 62/141 (43%), Gaps = 6/141 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S A+  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +   
Sbjct: 22  SEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFE 81

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     LS      +F  WPGP+T V      T      T    +   RV      
Sbjct: 82  QLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPETPR--WLTGRFDSLAVRVTNHPLV 139

Query: 125 KKLIETYGHPLAIPSANRSGQ 145
            +L E YG PL   SAN +GQ
Sbjct: 140 IELCEAYGKPLVSTSANLTGQ 160


>gi|116329499|ref|YP_799219.1| Sua5 family translation factor [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122243|gb|ABJ80286.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 202

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 14/191 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + + L+ G+ I  PT+TVY L  DS++   + +LYE+K  P   PL      IS+   + 
Sbjct: 19  STKLLEGGVYI-FPTDTVYALVADSQSKLGVEKLYELKNIPKNQPLSLICPSISVASNY- 76

Query: 75  SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            ++ LS     L K   PGP T +            S    K    R+P   + + L++ 
Sbjct: 77  -IEYLSNEAFRLMKKITPGPFTFITRANKHLPRVSFSNQKEKQIGIRIPDAIYLQSLLKI 135

Query: 131 YGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           + +PL   S  AN    I +  ++ I  + +      I+DGGI K+ L STI+N+  ++ 
Sbjct: 136 HPNPLTSTSVFANDEFIIEVDLLEQIYGARVEG----IVDGGIVKMEL-STILNMTNDEM 190

Query: 189 VRILRPGGLEI 199
             I    G E 
Sbjct: 191 TIIREGKGFEF 201


>gi|218128562|ref|ZP_03457366.1| hypothetical protein BACEGG_00132 [Bacteroides eggerthii DSM 20697]
 gi|317475623|ref|ZP_07934884.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217989286|gb|EEC55600.1| hypothetical protein BACEGG_00132 [Bacteroides eggerthii DSM 20697]
 gi|316908193|gb|EFV29886.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 187

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++       +V 
Sbjct: 5   IKKACQVMREGGVILYPTDTIWGIGCDATNEDAVRRVYEIKQRQDSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     + ++ W        PLT++         + L  A   +   RV    F+
Sbjct: 59  SSVKVDFYVQDVPEVAWDLIDLADKPLTIIYSGARNLAANLL--AEDGSVGIRVTNEDFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           K+L + +   +   SAN SGQ S  N   I
Sbjct: 117 KRLCQQFRKAVVSTSANISGQPSPRNFSEI 146


>gi|257471545|ref|ZP_05635544.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|311086217|gb|ADP66299.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086794|gb|ADP66875.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087381|gb|ADP67461.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087878|gb|ADP67957.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 190

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 77/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N+L    + L     IA PTE+++GL  D  +  A+++L  +K R     LI   SD   
Sbjct: 8   NSLLYCIKMLHNDDVIAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQ 67

Query: 70  VKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-K 125
           +K + + + LS    K     WPGP T +L     T      T    T   RV   F   
Sbjct: 68  IKMYVNENILSNKQKKKIFFHWPGPFTFLLPAKPNTPY--WLTGKFNTVAVRVSAHFEII 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G  +   SAN S        + +      K+ PL ++G I      S I+N+  
Sbjct: 126 KLCNAFGQAVVSTSANISNMTPCFTSEEVF-KCFGKDFPL-LNGKIGNEKNPSKIINIIN 183

Query: 186 EKKVR 190
            K +R
Sbjct: 184 GKLIR 188


>gi|253570302|ref|ZP_04847711.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384884|ref|ZP_06994443.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14]
 gi|251840683|gb|EES68765.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262028|gb|EFI04893.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14]
          Length = 187

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+ R+YEIKKR     ++       +V 
Sbjct: 5   IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVHRVYEIKKRADSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     +  + W        PLT++       ++ P   A   +   RV    F+
Sbjct: 59  SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEEFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           ++L + +   +   SAN SGQ    N   I
Sbjct: 117 RRLCQQFRKAIVSTSANISGQPGAANFTEI 146


>gi|118576874|ref|YP_876617.1| translation factor [Cenarchaeum symbiosum A]
 gi|118195395|gb|ABK78313.1| translation factor [Cenarchaeum symbiosum A]
          Length = 189

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +R+A + + +G  I  PT+TVYG+  D  +  A+  ++ IK R    PL      I
Sbjct: 23  DEDGIRRAVDAVRSGGVIVFPTDTVYGMGCDPYDAKAVGEIFRIKGRDPEKPLPLLAHSI 82

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDL 98
             ++  A+++     +   FWPGPLT+V +L
Sbjct: 83  GDLEGVAALEGYG-GMTSRFWPGPLTIVAEL 112


>gi|332829168|gb|EGK01832.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 187

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 20/192 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KA E L AG  I  PT+T++G+  D+ N  A+R++YE+KKR     L      I++V 
Sbjct: 5   IKKAFEVLVAGGLILYPTDTIWGIGCDATNEEAVRKVYELKKRVDSKAL------ITLVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               +D     + ++ W        PLT++ D  +  ++ P   A   +   RV    F+
Sbjct: 59  NPVKLDFYIDGVPEIAWDLIEVSDKPLTIIYD--NARNVAPNLIAEDGSLAIRVTKESFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIGLESTIV 181
           ++L + +   L   SAN SG+ S  N   I S  I   +  I+      ISK    S+I+
Sbjct: 117 QELCKRFRKALVSTSANISGEPSPANFSEI-SDEIKNGVDYIVQYRQNDISK-SKASSII 174

Query: 182 NVQCEKKVRILR 193
            +    +V+++R
Sbjct: 175 KLGKSGEVKVIR 186


>gi|88860592|ref|ZP_01135229.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Pseudoalteromonas tunicata
           D2]
 gi|88817187|gb|EAR27005.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Pseudoalteromonas tunicata
           D2]
          Length = 187

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 15/165 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS+ D   L +    L+ G  I  PTE VYGL  D  N +A+  L  IK+RP    LI  
Sbjct: 1   MSVHDE--LTQCLNKLEQGGVICYPTEAVYGLGCDPDNESAVMALLAIKQRPVEKGLILI 58

Query: 64  VSDISMVKKHASVDPLSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
             + + +  +  VD   + +   A++F  WPG +T ++   STT      T    T   R
Sbjct: 59  ADNYAQLLPY--VDDAKIPMDKRAEIFSAWPGAVTWIMPAKSTT--PKWLTGKFDTIAVR 114

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQI---SITNVKHILSSSI 159
           V      K+L + +  PL   SAN +GQ    S+   K + ++++
Sbjct: 115 VTNHSVVKQLCQQFNKPLVSTSANLTGQAPVRSLDEAKAMFTNNV 159


>gi|313204812|ref|YP_004043469.1| translation factor sua5 [Paludibacter propionicigenes WB4]
 gi|312444128|gb|ADQ80484.1| translation factor SUA5 [Paludibacter propionicigenes WB4]
          Length = 187

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           K  E L +G  I  PT+TV+GL  D+ N TA++R+++IKKR     ++  + +   ++ +
Sbjct: 7   KTLEVLRSGGVILYPTDTVWGLGCDATNETAVKRIFDIKKRADAKAMLVLIDNPGKLQSY 66

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
               P ++  L ++    PLT++       ++ P   A  K+   RV    F+KKL   +
Sbjct: 67  VDEVPDIAWDLIEMS-EKPLTIIYP--QARNLAPNLVAEDKSIGIRVTNEEFSKKLCAQF 123

Query: 132 GHPLAIPSANRSGQISITNVKHI 154
             P+   SAN SG+ +  N   I
Sbjct: 124 RKPIVSTSANVSGEPTPQNFSQI 146


>gi|29349351|ref|NP_812854.1| putative translation factor [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341259|gb|AAO79048.1| conserved hypothetical protein, putative translation factor
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 187

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 15/150 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+ R+YEIKKR     ++       +V 
Sbjct: 5   IKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVHRVYEIKKRADSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     +  + W        PLT++       ++ P   A   +   RV    F+
Sbjct: 59  SPVKVDFYVQDVPDVAWDLIEVADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEEFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           ++L + +   +   SAN SGQ    N   I
Sbjct: 117 RRLCQQFRKAIVSTSANISGQPGAANFTEI 146


>gi|296138965|ref|YP_003646208.1| Sua5/YciO/YrdC/YwlC family protein [Tsukamurella paurometabola DSM
           20162]
 gi|296027099|gb|ADG77869.1| Sua5/YciO/YrdC/YwlC family protein [Tsukamurella paurometabola DSM
           20162]
          Length = 216

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 13/198 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           L  G  + +PT+T+YG+  D+ +  A+  L   K R    P+   V     +    S V 
Sbjct: 24  LKGGHLVVMPTDTLYGIGCDAFDNRAVGDLLAAKHRGPDMPVGVLVGSWDTIDGLVSRVS 83

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
           P +  L   FWPG ++LV++   +   +   T    T   R+P      +L+   G P+A
Sbjct: 84  PAARELTHAFWPGAVSLVVEQAPSLAWNLGDTRG--TVMLRMPLHPVAIELLREVG-PMA 140

Query: 137 IPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           + SAN SG+    ++T+ +  L  S    + + +DGG ++  + STIV++   +  R+LR
Sbjct: 141 VSSANVSGKPPAATMTDARDQLGDS----VEVYLDGGPAEHAVASTIVDLSGPQP-RVLR 195

Query: 194 PGGLEIETLKRAISVELE 211
            G +    +   + V+ +
Sbjct: 196 EGAVTSARIAEVLGVDAQ 213


>gi|88811389|ref|ZP_01126644.1| Putative translation factor, SUA5/yciO/yrdC-like protein
           [Nitrococcus mobilis Nb-231]
 gi|88791278|gb|EAR22390.1| Putative translation factor, SUA5/yciO/yrdC-like protein
           [Nitrococcus mobilis Nb-231]
          Length = 188

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L AG  IA PTE VYGL  D R   A+ RL E+K R A   LI    +   + ++  + 
Sbjct: 16  LLSAGGVIAYPTEAVYGLGCDPRRRDAVVRLLELKGRSARKGLILIAPEADWLAEY--MA 73

Query: 78  PLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
           PLS  +A      WPGP+T V+   +   I    T    T   RV        L   +G 
Sbjct: 74  PLSEAVAAQMMASWPGPVTWVVPAAARAPIW--LTGGRGTIALRVTAHPVASALCRAFGG 131

Query: 134 PLAIPSANRSG 144
            L   SANR+G
Sbjct: 132 ALVSTSANRAG 142


>gi|271502209|ref|YP_003335235.1| SUA5/yciO/yrdC domain-containing protein [Dickeya dadantii Ech586]
 gi|270345764|gb|ACZ78529.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech586]
          Length = 189

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   ++   +  +  +  LS +  
Sbjct: 22  IAYPTEAVFGLGCDPDSEVAVERLLALKQRPREKGLILIAANFQQLASYIELSALSDMQR 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPGP+T V+   +  +     T    +   RV       +L   +G PL   SA
Sbjct: 82  QTIFATWPGPVTWVIP--ARAETPDWLTGRFNSLAVRVSDHPLVAQLCLAFGKPLVSTSA 139

Query: 141 NRSGQISITNVKHI 154
           N SGQ     V+ +
Sbjct: 140 NLSGQPPCRTVREV 153


>gi|120436628|ref|YP_862314.1| YrdC domain-containing protein [Gramella forsetii KT0803]
 gi|117578778|emb|CAL67247.1| protein containing YrdC domain [Gramella forsetii KT0803]
          Length = 189

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R   + L  G  I  PT+TV+G+  D+ N  A+ +++++KKR     LIC VS+  M++
Sbjct: 8   VRNCIDVLKKGGIILYPTDTVWGIGCDATNANAVDKVFQLKKREESKALICLVSNFKMLE 67

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH---PLSTANLKTACFRVPCGFTKKLI 128
           ++    P + +    +   P T++ D      +H    L + +       V   F   LI
Sbjct: 68  QYVEDVPETAYDILKYAKKPTTVIYD----KPVHIAENLVSDDDSLGIRVVRDTFCSDLI 123

Query: 129 ETYGHPLAIPSANRSGQ 145
           +    PL   SAN SGQ
Sbjct: 124 KKLKRPLVSTSANVSGQ 140


>gi|169628535|ref|YP_001702184.1| hypothetical protein MAB_1444 [Mycobacterium abscessus ATCC 19977]
 gi|169240502|emb|CAM61530.1| Conserved hypothetical protein (Sua5/YciO/YRDC/ YwlC family
           protein?) [Mycobacterium abscessus]
          Length = 226

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 7/206 (3%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  + +  A   L AG  + +PT+TVYGL  D+ +  A+  L   K R    P+   V  
Sbjct: 12  TRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRGRDMPVGVLVGS 71

Query: 67  ISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
              +       P +   L + FWPGPL++++    +     L  A   +   R+P     
Sbjct: 72  WHTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPSLSWD-LGDAQ-GSVMLRMPMHPVA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +L+   G P+A+ SAN SG+ +           +  ++ + +DGG +++G  STIV++ 
Sbjct: 130 IELLRAVG-PMAVSSANVSGRPAALTAAEA-RGQLDDKVAVYLDGGQAELGAASTIVDLT 187

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL 210
               V I+R G +  E +   I  ++
Sbjct: 188 GPAPV-IVREGPISREQIVEVIGGQV 212


>gi|317052438|ref|YP_004113554.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5]
 gi|316947522|gb|ADU66998.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5]
          Length = 202

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 8/169 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  +  A E +  G  +A PT++ YG+  D  N  AI R+  IK+     PL    S +
Sbjct: 12  DSRQIAAAVEIMRNGGLVAYPTDSAYGIGCDILNKDAIARVRRIKQMHDAKPLTFICSSL 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FT 124
           S   ++A +   +    K   PGP T +LD    T + P +  N   K    R+P     
Sbjct: 72  SHASQYAIISDYAYRTMKHLIPGPYTFLLD---ATKLTPKAVQNPKRKRCGIRIPANDIC 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
             L+E  G P+   +A   G+   T     +   +   +  ++DGG S+
Sbjct: 129 MALVEELGRPIISTTAKVDGE--PTGDPWRIHQELEGMLDALVDGGYSE 175


>gi|49079254|gb|AAT49871.1| PA3199 [synthetic construct]
          Length = 210

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 17/198 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  I  PT++ Y L       TA+ R+  I++    +       D+S + 
Sbjct: 17  VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD     L K   PGP T +L          +HP      +T   RVP C   + L
Sbjct: 77  VYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHP----KRRTIGLRVPNCPIARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG---------ISKIGLES 178
           +E  G PL   S    G     N  + +   +  ++ LI+DGG         IS    + 
Sbjct: 133 LEELGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGGGEASTVISLTDTDP 192

Query: 179 TIVNVQCEKKVRILRPGG 196
            ++ V C      ++P G
Sbjct: 193 EVIRVGCGDPAPFMQPAG 210


>gi|224026554|ref|ZP_03644920.1| hypothetical protein BACCOPRO_03311 [Bacteroides coprophilus DSM
           18228]
 gi|224019790|gb|EEF77788.1| hypothetical protein BACCOPRO_03311 [Bacteroides coprophilus DSM
           18228]
          Length = 188

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KACE +  G  I  PT+TV+G+  D+ N  A++R+YEIK+R     ++       +
Sbjct: 4   DEIKKACEVMQKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKQRSDSKAMLV------L 57

Query: 70  VKKHASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
           V     VD     +  + W        PLT++ D     ++ P   A   +   RV    
Sbjct: 58  VDSPVKVDFYVQDVPSVAWDLIELTTKPLTVIYD--GARNLAPNLLAEDGSVGIRVTNEE 115

Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145
           F+K+L   +   +   SAN SGQ
Sbjct: 116 FSKQLCFRFRKAIVSTSANISGQ 138


>gi|76788852|ref|YP_327938.1| sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis A/HAR-13]
 gi|76167382|gb|AAX50390.1| sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis A/HAR-13]
          Length = 281

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-- 74
           E + AG   A PT+TVYGL V      A +RL+ +K R +   L  +VS +  ++  A  
Sbjct: 8   ESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEAVAQQ 67

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGH 133
           S+   S  + + F PGPLTL+         H       KT  FR V     +++I+  G 
Sbjct: 68  SLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQKVG- 119

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           P    SAN SG  S  +   +      ++I +I   G   IGLEST+++
Sbjct: 120 PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID 166


>gi|300691879|ref|YP_003752874.1| hypothetical protein RPSI07_2235 [Ralstonia solanacearum PSI07]
 gi|299078939|emb|CBJ51599.1| conserved protein of unknown function, translation factor domain
           (SUA5) [Ralstonia solanacearum PSI07]
          Length = 207

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E + AG  +A+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD     + K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNRQYRVVKTATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G  +  N    + + + +++ L+IDGG
Sbjct: 123 VPDHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGG 175


>gi|326201500|ref|ZP_08191371.1| SUA5/yciO/yrdC domain [Clostridium papyrosolvens DSM 2782]
 gi|325988100|gb|EGD48925.1| SUA5/yciO/yrdC domain [Clostridium papyrosolvens DSM 2782]
          Length = 214

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E +  G  I +PT+ VY +  D+ N  A+ RL EI+K P   PL   + D   + K+ 
Sbjct: 15  AGEAIKRGKVIVVPTDAVYAVVCDAFNKEAVERLREIRKSPQDKPL-SLIIDKKDIDKYC 73

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            +   +   +     PG ++ +++     DI   +  N    C       TK + E  G 
Sbjct: 74  HIKNETYKSIIDALLPGKVSFLIN--KKGDIFTDAVPNSDAICVFWQDNETKDVYEESGT 131

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            LAI SAN++G    T ++  + S    E+ L ID G
Sbjct: 132 VLAISSANKAGFPEATTLEQAI-SFFEDEVELFIDSG 167


>gi|241767112|ref|ZP_04764882.1| SUA5 domain protein [Acidovorax delafieldii 2AN]
 gi|241362315|gb|EER58317.1| SUA5 domain protein [Acidovorax delafieldii 2AN]
          Length = 165

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 15/167 (8%)

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRIL-RPGGLEIETLKRAISVE-LEYCVDETSTPQS 222
           L++DGG   +G+ESTIV+  C + V +L RPG +    +  A  ++ L        TP++
Sbjct: 2   LVLDGGPCAVGIESTIVD--CTRGVPVLLRPGAITRAQIAAACGLQPLSKEELPAHTPRA 59

Query: 223 PGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL------- 275
            G L++HYAP ++VRL  +     +  +        +I     ++  +++ +L       
Sbjct: 60  SGTLEAHYAPAAKVRL--MDAAALQTALDLLGADAAHIAVYARTMPRTQSTRLVMRRMPD 117

Query: 276 --KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             +  A  LF  ++  DD G   I   + P       + +RL+RAAA
Sbjct: 118 DAEATAQQLFAALRAFDDQGVKLIWIETPPATAAWEGVRDRLQRAAA 164


>gi|87124889|ref|ZP_01080736.1| hypothetical protein RS9917_02768 [Synechococcus sp. RS9917]
 gi|86167209|gb|EAQ68469.1| hypothetical protein RS9917_02768 [Synechococcus sp. RS9917]
          Length = 213

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 16/151 (10%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TDSNAL        A +   +PT+T+  LA     P   R+++++K+RP   PLI   ++
Sbjct: 17  TDSNALLHQLRMGGAAM---LPTDTLPALA---SLPEHARQIWQLKRRPLRKPLILMGAE 70

Query: 67  ISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVP-C 121
              +  H +  V   +  LA   WPG LTLVL     T   +HP       T   R+P C
Sbjct: 71  PESLLTHVAPEVRGEAAALASAHWPGALTLVLPASGPTVQHLHP----GAATLGLRIPDC 126

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVK 152
             T+ L+   G PLA  S NRSG+ +  + +
Sbjct: 127 APTRHLLSLSG-PLATTSINRSGEPAAQSAR 156


>gi|299141002|ref|ZP_07034140.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris C735]
 gi|298577968|gb|EFI49836.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris C735]
          Length = 189

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T    +R A E +  G  I  PT+TV+G+  D+ N  A+ ++Y IKKR     LIC V 
Sbjct: 1   MTREEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           SD  + +   +V  ++  L       P T++LD     ++     A   +   R+    F
Sbjct: 61  SDARLQRCFRNVPNVAWELLDAA-IKPTTVILD--DAVNVAENLVAEDGSLAMRITSEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +K+L   +  P+   SAN SG+ +  N K I
Sbjct: 118 SKELCYRFQKPVVSTSANVSGEPAAANYKDI 148


>gi|262040758|ref|ZP_06013989.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041902|gb|EEW42942.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 190

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +    +K +     LS    
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYIDDSRLSDSQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPGP+T V      T      T    +   RV       +L E YG PL   SA
Sbjct: 83  EAIFSCWPGPVTFVFPARPETPR--WLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSA 140

Query: 141 NRSGQ 145
           N +GQ
Sbjct: 141 NLTGQ 145


>gi|333029267|ref|ZP_08457328.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM
           18011]
 gi|332739864|gb|EGJ70346.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM
           18011]
          Length = 199

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ L  G  I  PT+TV+G+  D+ N  A++R+Y IK+R     L+  V     V 
Sbjct: 17  IKKACQVLRDGGVILYPTDTVWGIGCDATNAEAVKRVYAIKQRTDSKALLVLVDSPVKVD 76

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
            +    P ++  L +L    PLT++ D     ++ P   A+  +   RV    F+++L +
Sbjct: 77  FYVEDIPSVAWDLIELT-EKPLTIIYD--GARNLAPNLLADDGSVGIRVSGEKFSQQLCQ 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
            +   +   SAN SGQ + +N      S I  E+  ++D
Sbjct: 134 RFRKAIVSTSANISGQPTPSNF-----SEISDEVKSLVD 167


>gi|254251991|ref|ZP_04945309.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158]
 gi|124894600|gb|EAY68480.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158]
          Length = 210

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAAEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDDPLNDPEDIRARLEKQVDLVIDGG 175


>gi|161830974|ref|YP_001595974.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331]
 gi|212277673|sp|A9N9G8|RIMN_COXBR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|161762841|gb|ABX78483.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331]
          Length = 186

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 8/148 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L  G  IA PTE VYGL  D  N  A+ +L  IKKR      I   S+  
Sbjct: 5   TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64

Query: 69  MVKKHAS-VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            V+     +DP +  LA++F  WPGP T      ++ +     T    T   RV      
Sbjct: 65  QVEPLTEPIDPKA--LARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLA 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVK 152
           K L + +  PL   SAN+ G+  I +VK
Sbjct: 121 KLLCQRFAGPLISSSANQEGEPPIRDVK 148


>gi|15604856|ref|NP_219640.1| SuA5 superfamily-related protein [Chlamydia trachomatis D/UW-3/CX]
 gi|237802566|ref|YP_002887760.1| hypothetical protein JALI_1361 [Chlamydia trachomatis B/Jali20/OT]
 gi|237804484|ref|YP_002888638.1| hypothetical protein CTB_1361 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255310937|ref|ZP_05353507.1| hypothetical protein Ctra62_00710 [Chlamydia trachomatis 6276]
 gi|255317238|ref|ZP_05358484.1| hypothetical protein Ctra6_00705 [Chlamydia trachomatis 6276s]
 gi|255348499|ref|ZP_05380506.1| hypothetical protein Ctra70_00720 [Chlamydia trachomatis 70]
 gi|255503040|ref|ZP_05381430.1| hypothetical protein Ctra7_00735 [Chlamydia trachomatis 70s]
 gi|255506712|ref|ZP_05382351.1| hypothetical protein CtraD_00725 [Chlamydia trachomatis D(s)2923]
 gi|3328537|gb|AAC67728.1| SuA5 Superfamily-related Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|231272784|emb|CAX09690.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273800|emb|CAX10584.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525178|emb|CBJ14653.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]
 gi|296434726|gb|ADH16904.1| hypothetical protein E150_00725 [Chlamydia trachomatis E/150]
 gi|296435653|gb|ADH17827.1| hypothetical protein G9768_00705 [Chlamydia trachomatis G/9768]
 gi|296436576|gb|ADH18746.1| hypothetical protein G11222_00710 [Chlamydia trachomatis G/11222]
 gi|296437513|gb|ADH19674.1| hypothetical protein G11074_00705 [Chlamydia trachomatis G/11074]
 gi|296438444|gb|ADH20597.1| hypothetical protein E11023_00715 [Chlamydia trachomatis E/11023]
 gi|297140012|gb|ADH96770.1| hypothetical protein CTG9301_00705 [Chlamydia trachomatis G/9301]
 gi|297748267|gb|ADI50813.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis D-EC]
 gi|297749147|gb|ADI51825.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis D-LC]
          Length = 281

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-- 74
           E + AG   A PT+TVYGL V      A +RL+ +K R +   L  +VS +  ++  A  
Sbjct: 8   ESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEAVAQQ 67

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGH 133
           S+   S  + + F PGPLTL+         H       KT  FR V     +++I+  G 
Sbjct: 68  SLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQKVG- 119

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           P    SAN SG  S  +   +      ++I +I   G   IGLEST+++
Sbjct: 120 PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID 166


>gi|294631402|ref|ZP_06709962.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14]
 gi|292834735|gb|EFF93084.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14]
          Length = 215

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 31/212 (14%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L + K R    P    +   +
Sbjct: 14  ATGLREAASAVRRGELVVLPTDTVYGIGADAFSGDAVADLLDAKGRGRAMPTPVLIGSPN 73

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117
            +  H  V   S     L   FWPG LTLV         DL  T            T   
Sbjct: 74  TL--HGLVTDFSEQAWELVDAFWPGALTLVARHQPSLQWDLGDTR----------GTVAV 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKI 174
           R+P       + T   P+A+ SAN +G     +    + +L  S+     + +DGG +  
Sbjct: 122 RMPLHPVAIELLTEVGPMAVSSANLTGHPAPETCDAAQEMLGDSVS----VYLDGGPTPG 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            + S+IV+V  E  V +LR G L  E L++ +
Sbjct: 178 NVPSSIVDVTREVPV-LLREGALSPEELRKVV 208


>gi|218702046|ref|YP_002409675.1| putative ribosome maturation factor [Escherichia coli IAI39]
 gi|218372032|emb|CAR19890.1| putative ribosome maturation factor [Escherichia coli IAI39]
          Length = 190

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +++  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDSIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|270264336|ref|ZP_06192602.1| putative ribosome maturation factor [Serratia odorifera 4Rx13]
 gi|270041472|gb|EFA14570.1| putative ribosome maturation factor [Serratia odorifera 4Rx13]
          Length = 189

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   +D S +  +     LS    
Sbjct: 22  IAYPTEAVFGLGCDPDSGQAVNALLALKQRPWEKGLILIAADYSQLTSYIDDGALSEQQR 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPGP+T V+   +  +   L T    +   RV      ++L   +G PL   SA
Sbjct: 82  AAMFATWPGPVTWVIP--ARPETPRLLTGRFNSLAVRVSDHPLVQQLCRQFGKPLVSTSA 139

Query: 141 NRSGQ 145
           N SGQ
Sbjct: 140 NLSGQ 144


>gi|139439320|ref|ZP_01772762.1| Hypothetical protein COLAER_01778 [Collinsella aerofaciens ATCC
           25986]
 gi|133775344|gb|EBA39164.1| Hypothetical protein COLAER_01778 [Collinsella aerofaciens ATCC
           25986]
          Length = 247

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 35/229 (15%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAV-----------DSRNP----------------- 42
           A+ +  E L  G    IPTETVYG+AV           D+  P                 
Sbjct: 18  AVERTAELLGRGGLALIPTETVYGVAVAVNAFSDAVPQDTSEPLPWPRDPQATVNGAAVP 77

Query: 43  ---TAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDL 98
              T  RR++ +K+R     +   V D   + ++    P     LA+  WPG LT+V+  
Sbjct: 78  ALGTGYRRIFTLKQRELTQTVAWLVDDAEALDRYGVDIPNEARVLARRCWPGALTIVVKA 137

Query: 99  LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
                   +  A+   A         + LI   G PLA  SAN  G  S  +   +    
Sbjct: 138 APCVPTF-MRAADDTVALRASASPVVQALIRACGSPLACTSANTHGAPSPASFAAV-EGR 195

Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           I + + + +D G +     STIV+ Q    ++ILR G L    ++R +S
Sbjct: 196 ILEGVDVAVDAGETPCRDASTIVSFQ-HGGLQILRQGALPASEIERVLS 243


>gi|88807794|ref|ZP_01123305.1| hypothetical protein WH7805_06526 [Synechococcus sp. WH 7805]
 gi|88787833|gb|EAR18989.1| hypothetical protein WH7805_06526 [Synechococcus sp. WH 7805]
          Length = 207

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 13/123 (10%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV----DPLSLH 82
           +PT+T+  LA     P++  +++ +K+RP   PLI   +++S +    +V    D  +  
Sbjct: 34  LPTDTLPALAC---TPSSAAQIWTLKQRPQDKPLILMAAEVSALLDLTTVIARED--ARP 88

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141
           LA  +WPGPLTLVL    T   H        T   R+P C  T+ L+   G PLA  SAN
Sbjct: 89  LADRYWPGPLTLVLPAEGTLTNH--LNPGQDTLGMRIPACAVTRSLLARCG-PLATTSAN 145

Query: 142 RSG 144
           RSG
Sbjct: 146 RSG 148


>gi|309781239|ref|ZP_07675976.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA]
 gi|308920060|gb|EFP65720.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA]
          Length = 207

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E +  G  +A+PT++ Y LA    + +A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAVEIIRGGGLVALPTDSCYALACHLDDKSAVERLRRVRSIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD     + K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G     N    +   + K++ L+IDGG
Sbjct: 123 VPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGG 175


>gi|152972191|ref|YP_001337337.1| putative ribosome maturation factor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330002239|ref|ZP_08304250.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3]
 gi|212288208|sp|A6TET6|RIMN_KLEP7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|150957040|gb|ABR79070.1| putative RNA-binding protein with unique protein fold [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328537378|gb|EGF63627.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3]
          Length = 190

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +    +K +     LS    
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYIDDSRLSDSQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPGP+T V      T      T    +   RV       +L E YG PL   SA
Sbjct: 83  EAIFSCWPGPVTFVFPARPETPR--WLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSA 140

Query: 141 NRSGQ 145
           N +GQ
Sbjct: 141 NLTGQ 145


>gi|332533672|ref|ZP_08409531.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036836|gb|EGI73297.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 187

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 11/178 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PTE VYGL  D  N  A+  L  IK+RP    LI    +   + K+  VD 
Sbjct: 14  LTQGEVILYPTEAVYGLGCDPDNQQAVEALLAIKQRPVEKGLILIADNYGQLLKY--VDD 71

Query: 79  LSLHL---AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYG 132
             + +   A +F  WP  +T V+   ++ +     T    T   RV    T K+L + +G
Sbjct: 72  AKIPMDKRADIFSSWPAAITWVMP--ASKNTPKWLTGQFDTIAVRVTNHPTVKRLCQEFG 129

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +GQ ++ +++    +   +++   +D  +      STI +    K  R
Sbjct: 130 KPLVSTSANLTGQETVISIEQA-KAQFAEQVGFYVDEPLGGNTQPSTIKDAMTGKIFR 186


>gi|224823451|ref|ZP_03696560.1| SUA5/yciO/yrdC domain protein [Lutiella nitroferrum 2002]
 gi|224603906|gb|EEG10080.1| SUA5/yciO/yrdC  domain protein [Lutiella nitroferrum 2002]
          Length = 171

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 80/181 (44%), Gaps = 18/181 (9%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  +A  TE+ +GL  D  N  AIRR+  +K RP    LI   + ++ V+    + 
Sbjct: 1   MLQQGGVLAYSTESCFGLGCDPFNVAAIRRVLALKARPNHKGLIVIAASLAQVRPL--IR 58

Query: 78  PLS----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
           PLS      LA+ +WPGP T +L   ++  + PL          RV   G    L    G
Sbjct: 59  PLSAAEEAELAR-YWPGPYTFLLP--ASPRVPPLLRGRHDKIAVRVTAHGEAAALCRALG 115

Query: 133 HPLAIPSANRSGQISITNV---KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             L   SANR+GQ S+      +    +++     L + G I      STI++ +  + +
Sbjct: 116 TALVSTSANRAGQTSLKTAQACRRAFGAAV-----LTLPGRIGGSRRPSTIIDFETGRVL 170

Query: 190 R 190
           R
Sbjct: 171 R 171


>gi|254166891|ref|ZP_04873745.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
 gi|197624501|gb|EDY37062.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
          Length = 180

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 11/123 (8%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
           P+ +PT+T+YGL +       I ++Y+IK R     +   V++I M+ K A + P +  L
Sbjct: 12  PVVMPTDTLYGLCMSIDG--DINKIYKIKGRSIEKKIPVGVANIEMMGKIAEITPEAEKL 69

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
            + F PGPLTLV   L    +  L      T   R+P    T  L+E  G P+ + SAN 
Sbjct: 70  IRAFMPGPLTLV---LRNKGVKWLG----DTVAVRIPAHTLTIYLMEKIG-PITLTSANI 121

Query: 143 SGQ 145
           SG+
Sbjct: 122 SGE 124


>gi|121999106|ref|YP_001003893.1| Sua5/YciO/YrdC/YwlC family protein [Halorhodospira halophila SL1]
 gi|212288207|sp|A1WZH9|RIMN_HALHL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|121590511|gb|ABM63091.1| translation factor SUA5 [Halorhodospira halophila SL1]
          Length = 191

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   L  G  +A PTE V+GL  D RN  A+ RL  +K RP    LI   ++   + 
Sbjct: 13  VRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESRQLA 72

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           ++  + PL    A+     WPGP+T VL   ++T      +    T   RV        L
Sbjct: 73  RY--LAPLPAEWAETIQASWPGPMTWVLP--ASTRAPRWVSGGRDTLAVRVTAHPVAAAL 128

Query: 128 IETYGHPL----AIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
              +G  L    A PSA R  + S+  V+    + I   +P  + G
Sbjct: 129 CSAFGGALVSTSANPSARRPAR-SVAEVRRYFGTRIDALVPGRLGG 173


>gi|83748250|ref|ZP_00945276.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia solanacearum UW551]
 gi|207743518|ref|YP_002259910.1| rna-binding protein, yrdc [Ralstonia solanacearum IPO1609]
 gi|83725091|gb|EAP72243.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia solanacearum UW551]
 gi|206594916|emb|CAQ61843.1| rna-binding protein, yrdc [Ralstonia solanacearum IPO1609]
          Length = 207

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E + AG  +A+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD     + K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G  +  N    + + + +++ L+IDGG
Sbjct: 123 VPEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGG 175


>gi|212632972|ref|YP_002309497.1| Sua5/YciO/YrdC/YwlC [Shewanella piezotolerans WP3]
 gi|212554456|gb|ACJ26910.1| Sua5/YciO/YrdC/YwlC [Shewanella piezotolerans WP3]
          Length = 187

 Score = 56.6 bits (135), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 13/182 (7%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            + +  G  IA PTE VYGL  D  N  AI  L  IK+RP    LI    +   +  +  
Sbjct: 10  ADIIKGGGVIAYPTEAVYGLGCDPDNDDAINHLLSIKQRPWQKGLILVAGEYQQLLPYID 69

Query: 76  VDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
              LS   L  A+  WPGP T ++   +   +  L T +  +   RV      + L    
Sbjct: 70  ESQLSAEQLAFAQSKWPGPFTFIMP--AKPGLSTLLTGSFDSIAVRVTAHPDVQALCAAI 127

Query: 132 GHPLAIPSANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             P+   SAN SG    +S+  VK   + +I      ++ G +      STI++ +    
Sbjct: 128 NKPIVSTSANLSGLEPALSVETVKQQFNRAIFA----VVMGELGTQTAPSTIIDARSGNI 183

Query: 189 VR 190
           +R
Sbjct: 184 IR 185


>gi|207722877|ref|YP_002253311.1| rna-binding protein, yrdc [Ralstonia solanacearum MolK2]
 gi|206588061|emb|CAQ18641.1| rna-binding protein, yrdc [Ralstonia solanacearum MolK2]
          Length = 207

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E + AG  +A+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD     + K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G  +  N    + + + +++ L+IDGG
Sbjct: 123 VPEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGG 175


>gi|198276895|ref|ZP_03209426.1| hypothetical protein BACPLE_03100 [Bacteroides plebeius DSM 17135]
 gi|198270420|gb|EDY94690.1| hypothetical protein BACPLE_03100 [Bacteroides plebeius DSM 17135]
          Length = 188

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KACE L  G  I  PT+TV+G+  D+ N  A++R++EIK+R     ++       +
Sbjct: 4   DEIKKACEVLQKGGVILYPTDTVWGIGCDATNEEAVKRVFEIKQRADSKAMLV------L 57

Query: 70  VKKHASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
           V     VD     +  + W        PLT++ D     ++ P   A   +   RV    
Sbjct: 58  VDSPVKVDFYVQDVPSVAWDLIEMTTKPLTIIYD--GARNLAPNLIAADGSVGIRVTSEE 115

Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145
           F+K+L   +   +   SAN SGQ
Sbjct: 116 FSKQLCFRFRKAIVSTSANISGQ 138


>gi|154705971|ref|YP_001425408.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|212277672|sp|A9KH21|RIMN_COXBN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|154355257|gb|ABS76719.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 186

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 9/165 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L  G  IA PTE VYGL  D  N  A+ +L  IKKR      I   S+  
Sbjct: 5   TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64

Query: 69  MVKKHAS-VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            V+     +DP +  LA++F  WPGP T      ++ +     T    T   RV      
Sbjct: 65  QVEPLTEPIDPKA--LARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLA 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           K L + +  PL   SAN+ G   I +VK IL      +I  I++G
Sbjct: 121 KLLCQRFAGPLISSSANQEGGPPIRDVK-ILRLVFGNKIDKILEG 164


>gi|53712278|ref|YP_098270.1| hypothetical protein BF0986 [Bacteroides fragilis YCH46]
 gi|60680456|ref|YP_210600.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis NCTC
           9343]
 gi|253563683|ref|ZP_04841140.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762469|ref|ZP_06091037.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52215143|dbj|BAD47736.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491890|emb|CAH06649.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis NCTC
           9343]
 gi|251947459|gb|EES87741.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255077|gb|EEZ26423.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 204

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P     +++  
Sbjct: 75  SEYAKVDNNIFKLMKRNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNSIIREIAR 131

Query: 130 TYGHPLAIPSA--NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186
               P+   +   +    I       ++   +   + L+IDGGI   G+E ST+VN   E
Sbjct: 132 LLDAPIMTTTLPHDEHEDIEYVTDPELIDEKLGDVVDLVIDGGIG--GIEPSTVVNC-TE 188

Query: 187 KKVRILRPGGLEIE 200
            +  I+R G  E+E
Sbjct: 189 GEAAIVRQGKGELE 202


>gi|241662683|ref|YP_002981043.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D]
 gi|240864710|gb|ACS62371.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D]
          Length = 207

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E + +G  +A+PT++ Y LA    + +A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAVEIIRSGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD     + K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G     N    +   + K++ L+IDGG
Sbjct: 123 VPEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGG 175


>gi|300704489|ref|YP_003746092.1| hypothetical protein RCFBP_20293 [Ralstonia solanacearum CFBP2957]
 gi|299072153|emb|CBJ43485.1| conserved protein of unknown function, translation factor domain
           (SUA5) [Ralstonia solanacearum CFBP2957]
          Length = 207

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E + AG  +A+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD     + K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G  +  N    + + + +++ L+IDGG
Sbjct: 123 VPEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGG 175


>gi|238792973|ref|ZP_04636603.1| Ribosomal modification protein RimN [Yersinia intermedia ATCC
           29909]
 gi|238727827|gb|EEQ19351.1| Ribosomal modification protein RimN [Yersinia intermedia ATCC
           29909]
          Length = 190

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 14/145 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S AL      L     +A PTE V+GL  D  +  A+  L  +K+RP    LI   ++ 
Sbjct: 6   NSGALSDVLRALQQEEVVAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANY 65

Query: 68  SMVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV--- 119
             +K +  VD  +L +A+   LF  WPGP+T V+   + T      T    +   RV   
Sbjct: 66  EQLKPY--VDDSTLSMAQRETLFSCWPGPVTWVIPACANTPR--WLTGTFGSLAVRVSDH 121

Query: 120 PCGFTKKLIETYGHPLAIPSANRSG 144
           P    ++L   YG PL   SAN SG
Sbjct: 122 P--LVQQLCSQYGKPLVSTSANLSG 144


>gi|114321780|ref|YP_743463.1| SUA5/yciO/yrdC-like protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310777|sp|Q0A5B4|RIMN_ALHEH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|114228174|gb|ABI57973.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 190

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 75/182 (41%), Gaps = 6/182 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+    L AG  +A PTE VYGL  D  +P A+  L  +K+R     LI   S +S + 
Sbjct: 11  IRQCAARLQAGGVVAYPTEAVYGLGCDPGDPAAVATLLTLKRRDPGKGLILIASRVSQLS 70

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
                 PL        WPGP T +L     T    ++    K A           L E +
Sbjct: 71  PWLGDAPLP-QAVLASWPGPNTWLLPAAPHTPAW-ITGGRAKVAVRVTAHPVAAALCEAF 128

Query: 132 GHPLAIPSANRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           G  +   SANR GQ    S T V+  L +    E+  I+ G + +    + I + +    
Sbjct: 129 GGAIVSTSANRDGQPPARSATQVRTRLGAE-AAELADILPGPVDRSARPTAIRDAESGAV 187

Query: 189 VR 190
           +R
Sbjct: 188 IR 189


>gi|289596430|ref|YP_003483126.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
 gi|289534217|gb|ADD08564.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
          Length = 189

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 11/123 (8%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
           P+ +PT+T+YGL +       I ++Y+IK R     +   V++I M+ K A + P +  L
Sbjct: 21  PVVMPTDTLYGLCMSIDG--DINKIYKIKGRSIEKKIPVGVANIEMMGKIAEITPEAEKL 78

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANR 142
            + F PGPLTLV   L    +  L      T   R+P    T  L+E  G P+ + SAN 
Sbjct: 79  IRAFMPGPLTLV---LRNKGVKWLG----DTVAVRIPAHTLTIYLMEKIG-PITLTSANI 130

Query: 143 SGQ 145
           SG+
Sbjct: 131 SGE 133


>gi|74318478|ref|YP_316218.1| translation factor SUA5 [Thiobacillus denitrificans ATCC 25259]
 gi|123611282|sp|Q3SG43|RIMN_THIDA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|74057973|gb|AAZ98413.1| probable Sua5/YciO/YrdC family protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 188

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 12/178 (6%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASV 76
           +L  G  IA PTE+ YGL  D RN  A+RRL  +K R A   ++        ++    ++
Sbjct: 17  YLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGAL 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135
            P      +  WPGP+T V+   ++    P  T    T   RV        L  + G  L
Sbjct: 77  SPTGRARMRRSWPGPVTWVVP--ASRRCPPELTGGRTTVAVRVTAHRPAAALCRSLGTAL 134

Query: 136 AIPSANRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              SAN+SG     +    + +  + +      ++DG I      ST++++   K +R
Sbjct: 135 VSTSANKSGHTPAKTAAQCRRMFGARV-----RVVDGRIGTRRRPSTLIDLATGKILR 187


>gi|161506044|ref|YP_001573156.1| putative ribosome maturation factor [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867391|gb|ABX24014.1| hypothetical protein SARI_04225 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 200

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +   
Sbjct: 17  TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLILIAASFE 76

Query: 69  MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+    K     WPGP+T V    +TT      T    +   RV      
Sbjct: 77  QLKPYIDDSILTTAQRKAVFDCWPGPVTFVFPASATT--PRWLTGRFDSLAVRVTDHPLV 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
             L   YG PL   SAN SG      V+ +  +    + P++
Sbjct: 135 VALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPMV 175


>gi|283788082|ref|YP_003367947.1| hypothetical protein ROD_45391 [Citrobacter rodentium ICC168]
 gi|282951536|emb|CBG91235.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 190

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++  A E L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +   
Sbjct: 7   TDSIAAAVEVLNNENVIAYPTEAVFGVGCDPDSETAVNRLLALKQRPVDKGLILIAASFD 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDSMLTEARREAVFARWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L E YG PL   SAN SG
Sbjct: 123 LVVALCEAYGKPLVSTSANLSG 144


>gi|242280257|ref|YP_002992386.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123151|gb|ACS80847.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio salexigens DSM
           2638]
          Length = 202

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 20/203 (9%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL---ICHVSDISM 69
           ++A   L  G  +  PTET++ +  D+ +  A  R+  IK RP   PL   I  +  + +
Sbjct: 4   QEAVNILRTGGVLVYPTETLFAIGADAMDERAANRVALIKGRPVSKPLPLIIGSIDQLDL 63

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCGFTKKL 127
           V +  SV P  L L K FWPGPL++   L+   +  P +  + +  T+          +L
Sbjct: 64  VTE--SVSPELLKLTKKFWPGPLSI---LVKAREELPSAVKDSRGYTSVRWTDHPRAAEL 118

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVN 182
                 PL   SAN SG+         +++ +  E+ ++++G  +     K G  ST+V 
Sbjct: 119 CLKAHAPLIATSANMSGKPGTG-----IAAELDAELTIMVEGVYTPDPGPKGGNPSTVVE 173

Query: 183 VQCEKKVRILRPGGLEIETLKRA 205
              + K++I R G +  E L  A
Sbjct: 174 PLADNKIKIFRDGVVTREQLTNA 196


>gi|167586772|ref|ZP_02379160.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ubonensis Bu]
          Length = 210

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAVEIVNKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDDRQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPEHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +     +    N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPEEEPLNDPEDIRARLEKQVDLVIDGG 175


>gi|206576981|ref|YP_002236315.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342]
 gi|288933304|ref|YP_003437363.1| SUA5/yciO/yrdC domain protein [Klebsiella variicola At-22]
 gi|290512106|ref|ZP_06551474.1| ribosome maturation factor rimN [Klebsiella sp. 1_1_55]
 gi|206566039|gb|ACI07815.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342]
 gi|288888033|gb|ADC56351.1| SUA5/yciO/yrdC domain protein [Klebsiella variicola At-22]
 gi|289775896|gb|EFD83896.1| ribosome maturation factor rimN [Klebsiella sp. 1_1_55]
          Length = 190

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +    +K +     LS    
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAASFEQLKPYVDDSRLSDSQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPGP+T V      T      T    +   RV       +L E YG PL   SA
Sbjct: 83  DAIFSCWPGPVTFVFPARPETPR--WLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSA 140

Query: 141 NRSGQ 145
           N +GQ
Sbjct: 141 NLTGQ 145


>gi|294673011|ref|YP_003573627.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella ruminicola 23]
 gi|294473050|gb|ADE82439.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella ruminicola 23]
          Length = 194

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDI 67
            + +++A E +  G  I  PT+TV+G+  D+ N  A++R+YEIK+R     LIC V SD 
Sbjct: 4   EDDIKQAIETMRKGGVILYPTDTVWGIGCDATNAEAVKRVYEIKQREDSKALICLVDSDA 63

Query: 68  SMVKKHASVDPLSLHLAKLFWPG----PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            M +   +V  ++  L           P TL+LD     ++ P   A   +   R+    
Sbjct: 64  RMQRYFRNVPDVAWQLIDSLKEATDAKPTTLILD--GAINLAPNLIAEDGSLGIRITNEP 121

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITN 150
           F+K+L   +   +   SAN SG+ +  N
Sbjct: 122 FSKELCFRFQKAIVSTSANISGEPAAQN 149


>gi|56752239|ref|YP_172940.1| hypothetical protein syc2230_c [Synechococcus elongatus PCC 6301]
 gi|56687198|dbj|BAD80420.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 202

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 25/171 (14%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  I+ PT+T+  LAV    P    ++Y +K+RP+  PLI   +  + +   A   P  
Sbjct: 15  AGQVISFPTDTLPALAV---QPDQAAQIYRLKQRPSEKPLILMAATAAELWPFAQGSPED 71

Query: 81  LH----LAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
                 +A  +WPG LTLVL   D L     +PL  +++      +P C   ++++   G
Sbjct: 72  QAQWNAIANQYWPGALTLVLPASDRLPAA-ANPLDRSSIG---LHIPACALARQILAETG 127

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIP----LIIDGGISKIGLEST 179
            PLA  SANRSG+ ++ N       +I  E P    L  D      GL ST
Sbjct: 128 -PLATTSANRSGEPALLN-----PDAIAAEFPEVTVLAEDPWPDPSGLAST 172


>gi|157148857|ref|YP_001456176.1| putative ribosome maturation factor [Citrobacter koseri ATCC
           BAA-895]
 gi|157086062|gb|ABV15740.1| hypothetical protein CKO_04695 [Citrobacter koseri ATCC BAA-895]
          Length = 200

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++A+  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 17  TDAIAAAVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAANFE 76

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+      +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 77  QLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATTPR--WLTGRFDSLAVRVTDHPLV 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
             L + YG PL   SAN +G      V+ +
Sbjct: 135 VSLCQAYGKPLVSTSANLTGLPPCRTVEEV 164


>gi|228471567|ref|ZP_04056342.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228277143|gb|EEK15823.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 186

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++   FL +G  I  PT+T++GL  D  +   I+R+  IK+R      I  VS   M++
Sbjct: 7   VKETLSFLRSGKVILYPTDTIWGLGCDPYSREGIQRIQAIKQRDIRKSFILLVSSYQMLQ 66

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           ++ +V   +L  L K   P  +          D H    A+   A   V   F K LI+ 
Sbjct: 67  RYVAVSQETLAFLDKQERPTSVIYT----QVYDSHLPEAADHSLAFRVVKDPFCKALIDA 122

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           +  PL   SAN SG+ S  N   ++S  I K +  I+
Sbjct: 123 FDAPLVSTSANISGEESPKNFS-LISEQIKKSVDYIV 158


>gi|126178386|ref|YP_001046351.1| Sua5/YciO/YrdC/YwlC family protein [Methanoculleus marisnigri JR1]
 gi|125861180|gb|ABN56369.1| translation factor SUA5 [Methanoculleus marisnigri JR1]
          Length = 191

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 18/186 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PTETVYGL  D+ +  A+ R+YE K RP   P+   VSD+ M+   A VD  +    
Sbjct: 17  VVYPTETVYGLGADALSEDAVMRVYEAKNRPLGKPISIAVSDMEMLAAVAVVDDAARAFI 76

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
           + F PGP+T++L   S   +  + T        R P       +I     P+   SAN S
Sbjct: 77  ERFLPGPVTVLLPAKSC--LPAVLTGGTGLIGVRWPDHEIAAAIIARLDAPITSTSANIS 134

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG-GLE---- 198
             I  T    +   S+  +   ++DGG    G  ST+V++      R+LR G G E    
Sbjct: 135 DDIPPTRPDEV---SVPHD--YLVDGG-ELPGTPSTVVDLPAR---RVLRKGAGWEAVEA 185

Query: 199 -IETLK 203
            +E+LK
Sbjct: 186 FLESLK 191


>gi|82778580|ref|YP_404929.1| putative ribosome maturation factor [Shigella dysenteriae Sd197]
 gi|123561454|sp|Q32B67|RIMN_SHIDS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|81242728|gb|ABB63438.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 190

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKLRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|256372569|ref|YP_003110393.1| SUA5/yciO/yrdC domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009153|gb|ACU54720.1| SUA5/yciO/yrdC domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 225

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 14/201 (6%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S+    A R+A   LD G  + +PT+TV GL   + +  A+ R+  +K R    P    V
Sbjct: 15  SLEGVEAFRRAATILDGGSVLLMPTDTVPGLVGSATSRRALERIAVLKGRSTTTPPPVLV 74

Query: 65  SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             I     +A     S L      WPGP++ V+D  +  D+      + ++   RVP   
Sbjct: 75  GSIDEALAYAEPRRRSRLRALGALWPGPISAVVDAPTLADV---VNPSGRSVALRVPD-- 129

Query: 124 TKKLIE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIG----L 176
            + L E   G PLA  SAN  G  + ++V   L+  +    P+   + G +   G    +
Sbjct: 130 VEWLAELATGRPLAASSANWHGVATPSDVDTALADLVAHGSPVAGRLAGVLWAPGPSGRV 189

Query: 177 ESTIVNVQCEKKVRILRPGGL 197
            STIV++    +VR+LR G +
Sbjct: 190 ASTIVDLTG-PQVRVLRQGAV 209


>gi|301161990|emb|CBW21534.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis 638R]
          Length = 204

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 11/194 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P     +++  
Sbjct: 75  SEYAKVDNNIFKLMKRNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNSIIREIAR 131

Query: 130 TYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186
               P+   +   +    I       ++   +   + L+IDGGI   G+E ST+VN   E
Sbjct: 132 LLDAPIMTTTLPYDEHEDIEYVTDPELIDEKLGDVVDLVIDGGIG--GIEPSTVVNC-TE 188

Query: 187 KKVRILRPGGLEIE 200
            +  I+R G  E+E
Sbjct: 189 GEAVIVRQGKGELE 202


>gi|212709015|ref|ZP_03317143.1| hypothetical protein PROVALCAL_00047 [Providencia alcalifaciens DSM
           30120]
 gi|212688381|gb|EEB47909.1| hypothetical protein PROVALCAL_00047 [Providencia alcalifaciens DSM
           30120]
          Length = 189

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL  D  +  A+ +L  +K+RP    LI    +   +K +     L+    
Sbjct: 22  IAYPTEAVFGLGCDPDSEIAVNQLLALKQRPWEKGLILIADNYEQLKNYVDDSQLNEQQR 81

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
           +     WPGP+T V+    TT      T    T   RV      K L   YG P+   SA
Sbjct: 82  QAMFATWPGPVTWVIPAKKTT--PKWLTGQFDTLAVRVTNHELVKALCSQYGKPIVSTSA 139

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           N SG       + +++    K+   ++DG + 
Sbjct: 140 NLSGLEPCRTTEEVIAQ--FKDTVPVLDGDVG 169


>gi|212277726|sp|A8AQH7|RIMN_CITK8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 190

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 10/152 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++A+  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   TDAIAAAVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAANFE 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCG 122
            +K +     L+      +F  WPGP+T V    +TT      T    +   RV   P  
Sbjct: 67  QLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATTPR--WLTGRFDSLAVRVTDHP-- 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
               L + YG PL   SAN +G      V+ +
Sbjct: 123 LVVSLCQAYGKPLVSTSANLTGLPPCRTVEEV 154


>gi|53719872|ref|YP_108858.1| hypothetical protein BPSL2262 [Burkholderia pseudomallei K96243]
 gi|53723777|ref|YP_103302.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344]
 gi|76812077|ref|YP_334088.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710b]
 gi|121599611|ref|YP_993496.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1]
 gi|124385702|ref|YP_001029074.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229]
 gi|126440920|ref|YP_001059595.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668]
 gi|126450648|ref|YP_001081004.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247]
 gi|126453661|ref|YP_001066876.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106a]
 gi|134277533|ref|ZP_01764248.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305]
 gi|167001768|ref|ZP_02267560.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20]
 gi|167720315|ref|ZP_02403551.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei DM98]
 gi|167816526|ref|ZP_02448206.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91]
 gi|167824921|ref|ZP_02456392.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 9]
 gi|167846438|ref|ZP_02471946.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           B7210]
 gi|167895016|ref|ZP_02482418.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894]
 gi|167903401|ref|ZP_02490606.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167911654|ref|ZP_02498745.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112]
 gi|167919652|ref|ZP_02506743.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           BCC215]
 gi|217420441|ref|ZP_03451946.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576]
 gi|226198927|ref|ZP_03794490.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812987|ref|YP_002897438.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           MSHR346]
 gi|238561611|ref|ZP_00441723.2| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei GB8 horse
           4]
 gi|242315443|ref|ZP_04814459.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106b]
 gi|254177849|ref|ZP_04884504.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399]
 gi|254184394|ref|ZP_04890984.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655]
 gi|254191427|ref|ZP_04897931.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195745|ref|ZP_04902171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13]
 gi|254200256|ref|ZP_04906622.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH]
 gi|254209334|ref|ZP_04915680.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU]
 gi|254261445|ref|ZP_04952499.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710a]
 gi|254297059|ref|ZP_04964512.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e]
 gi|254357996|ref|ZP_04974269.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280]
 gi|52210286|emb|CAH36265.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52427200|gb|AAU47793.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344]
 gi|76581530|gb|ABA51005.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710b]
 gi|121228421|gb|ABM50939.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1]
 gi|124293722|gb|ABN02991.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229]
 gi|126220413|gb|ABN83919.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668]
 gi|126227303|gb|ABN90843.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106a]
 gi|126243518|gb|ABO06611.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247]
 gi|134251183|gb|EBA51262.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305]
 gi|147749852|gb|EDK56926.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH]
 gi|147750107|gb|EDK57178.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU]
 gi|148027123|gb|EDK85144.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280]
 gi|157807680|gb|EDO84850.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e]
 gi|157939099|gb|EDO94769.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698888|gb|EDP88858.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399]
 gi|169652490|gb|EDS85183.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13]
 gi|184214925|gb|EDU11968.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655]
 gi|217395853|gb|EEC35870.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576]
 gi|225929027|gb|EEH25051.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505250|gb|ACQ97568.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           MSHR346]
 gi|238524204|gb|EEP87638.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei GB8 horse
           4]
 gi|242138682|gb|EES25084.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106b]
 gi|243062460|gb|EES44646.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20]
 gi|254220134|gb|EET09518.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710a]
          Length = 209

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  VRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 ALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGG 175


>gi|167563323|ref|ZP_02356239.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           EO147]
          Length = 209

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  AFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +   S      N    + + + K+  L+IDGG
Sbjct: 135 ALGQPLLGTTLILSPDDEPLNDPEEIRTRLEKQADLVIDGG 175


>gi|153876037|ref|ZP_02003559.1| Sua5/YciO/YrdC/YwlC family protein [Beggiatoa sp. PS]
 gi|152067499|gb|EDN66441.1| Sua5/YciO/YrdC/YwlC family protein [Beggiatoa sp. PS]
          Length = 184

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A  +L  G  IA PTE VYGL  D  N  A+  L  +K+R     LI   +D S + 
Sbjct: 6   LKQATRYLKTGGIIAYPTEAVYGLGCDPLNEKAVTCLLALKQRAWQKGLILIAADYSQLS 65

Query: 72  KHASVDPLSLHL-AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
               +DPL+  L  ++F  WPGP+T ++   S      L   + K A         K L 
Sbjct: 66  PF--LDPLTAILEEQIFATWPGPVTWLIPAKSNVP-QWLRGKSTKLAVRVTAHPIAKALC 122

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           + +  PL   SAN S Q  +   + +   +  + I  I+ G I +
Sbjct: 123 QYWRGPLVSTSANISHQPPVRTAQKV-RRTFAQRIDYIVPGPIGE 166


>gi|325297458|ref|YP_004257375.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM
           18170]
 gi|324317011|gb|ADY34902.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM
           18170]
          Length = 187

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 8/186 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ ACE ++ G  I  PT+TV+G+  D+ N  A++R+YEIK+R     ++  V     V 
Sbjct: 5   IKNACEVMNKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKRRADSKAMLVLVDSPVKVD 64

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
            +    P ++  L +L    PLT++ D     ++ P   A   +   RV    F+K+L  
Sbjct: 65  YYVQDVPSVAWDLIELT-TKPLTIIYD--GARNLAPNLLAEDGSVGIRVTNEAFSKELCF 121

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEK 187
            +   +   SAN SG+ S      I S  I   +  I+D    + G    S+I+ +    
Sbjct: 122 RFRKAIVSTSANISGEPSPAVFSEI-SEEIKSAVDYIVDFRREETGHPKPSSIIKLGKGG 180

Query: 188 KVRILR 193
           +V+I+R
Sbjct: 181 EVKIIR 186


>gi|15679686|ref|NP_276803.1| hypothetical protein MTH1692 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|22218836|pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
           Methanobacterium Thermoautotrophicum
 gi|2622823|gb|AAB86164.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 208

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 10/199 (5%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M I  IT  N     L +A   ++ G  +  PT+T+YGL V++ +  A+RRL+ +K R  
Sbjct: 1   MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P+   VS +  + + +     ++ L +   PGP T+VL+      I  + T       
Sbjct: 61  HKPVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLE--RNELIPDVITGGSSRVG 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            RVP     + I     P+   SAN SG+     ++ I+       + L++D G      
Sbjct: 119 IRVPDDEICRRIAAR-FPVTATSANISGKPPSPRLEEIVRD--LDAVDLVLDAGDCLDME 175

Query: 177 ESTIVNVQCEKKVRILRPG 195
            ST++++      R+LR G
Sbjct: 176 PSTVIDLTVNPP-RVLRRG 193


>gi|255020863|ref|ZP_05292919.1| hypothetical protein ACA_1085 [Acidithiobacillus caldus ATCC
          51756]
 gi|254969654|gb|EET27160.1| hypothetical protein ACA_1085 [Acidithiobacillus caldus ATCC
          51756]
          Length = 186

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
          LRKA   L  G  IA PTE V+GL  D R   A+R +  +KKRP    ++   +  S   
Sbjct: 11 LRKAVALLRHGQVIAYPTEGVWGLGCDPRRRPALRHILRLKKRPQHKGVLLIAATRSQAA 70

Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96
          + A +D +   +   +WPG  TLVL
Sbjct: 71 RFADLDAVEEQVLGRYWPG-TTLVL 94


>gi|260434270|ref|ZP_05788240.1| possible translation factor [Synechococcus sp. WH 8109]
 gi|260412144|gb|EEX05440.1| possible translation factor [Synechococcus sp. WH 8109]
          Length = 204

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 10/131 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG    IPT+T+ GLAV    P   + L+ +K+RPA  PLI   + +  +    +V P
Sbjct: 20  LRAGEAAIIPTDTLPGLAV---RPDQAQTLWRLKRRPADKPLILMGASVKDLLHDVAV-P 75

Query: 79  LSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
               +A L   +WPG LTLVL          L+       C R+P    T+ L++  G P
Sbjct: 76  CHREVAALAERYWPGALTLVLPARDGGAGRYLNPGGTTLGC-RIPAWEQTRALLQISG-P 133

Query: 135 LAIPSANRSGQ 145
           LA  SANRSG+
Sbjct: 134 LATTSANRSGE 144


>gi|212288265|sp|A9MN84|RIMN_SALAR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 190

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +   
Sbjct: 7   TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLILIAASFE 66

Query: 69  MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+    K     WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDSILTTAQRKAVFDCWPGPVTFVFPASATT--PRWLTGRFDSLAVRVTDHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
             L   YG PL   SAN SG      V+ +  +    + P++
Sbjct: 125 VALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPMV 165


>gi|330447323|ref|ZP_08310973.1| protein involved in synthesis of
           threonylcarbamoyladenosine-modified tRNA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491514|dbj|GAA05470.1| protein involved in synthesis of
           threonylcarbamoyladenosine-modified tRNA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 185

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PTE V+G+  D  N  A+ +L EIK+RP    LI   ++   +  +     
Sbjct: 11  LKQGEVIGYPTEAVFGVGCDPDNQQAVEKLLEIKQRPVEKGLILIAANYDQLLPYIDESQ 70

Query: 79  LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           L+          WPGP+T V+   +  ++    T    T   RV      ++L   +G P
Sbjct: 71  LTAEQKAAVMATWPGPVTWVMP--TKANVPAFLTGQFTTIAVRVSDHPLVQRLCLEFGKP 128

Query: 135 LAIPSANRSGQ 145
           +   SAN +GQ
Sbjct: 129 ITSTSANLTGQ 139


>gi|253566324|ref|ZP_04843778.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945428|gb|EES85866.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 187

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+TV+G+  D+ N  A+RR+YEIK+R     ++  V     V+
Sbjct: 5   IKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKRRADSKAMLVLVDSPVKVE 64

Query: 72  KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            +    P ++  L +       + + G   L  +LL+      +   N           F
Sbjct: 65  FYVQDVPSVAWDLIEVADKSLTIIYSGARNLASNLLAEDGSVGIRVTNE---------AF 115

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +++L + +   +   SAN SGQ    N   I
Sbjct: 116 SRRLCQQFRKAIVSTSANVSGQPGAANFNEI 146


>gi|254481766|ref|ZP_05095009.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037895|gb|EEB78559.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 207

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + + AG  +  PT++ Y +     +  A+ R+  I+K    +       D+S + 
Sbjct: 17  VRQAVDIIRAGGVVVYPTDSAYAIGCHIGDKNALDRIRRIRKLADRHNFTLVCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            ++ VD     + K   PGP T +L   +T+++   L  A  KT   RVP    T+ L+ 
Sbjct: 77  TYSRVDNADYRMLKACTPGPYTFILK--ATSEVPRRLMHAKRKTVGLRVPDNNITQALLT 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   +    G        + +  ++  ++ L+IDGG    G+E+T V    ++  
Sbjct: 135 DLGEPMMSVTLIMPGDEYPLIDPYDIRETLQHDVDLVIDGGYC--GMEATTVVDLVDETP 192

Query: 190 RILRPGGLEI 199
            +LR G  +I
Sbjct: 193 LVLRAGKGDI 202


>gi|254447533|ref|ZP_05060999.1| Sua5/YciO/YrdC family protein [gamma proteobacterium HTCC5015]
 gi|198262876|gb|EDY87155.1| Sua5/YciO/YrdC family protein [gamma proteobacterium HTCC5015]
          Length = 175

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 14/178 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A PTE V+GL  D R   A+R++  +K+RP    LI   ++I  +     +D 
Sbjct: 5   LQRGEVVAYPTEAVFGLGCDPRQELAVRQVLRLKQRPEEKGLILIAAEIDQLDHWLDMDA 64

Query: 79  LSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           ++     +   WPGP+T +L    +T          +T   RV       +L   +G  L
Sbjct: 65  VTEQWPHVLERWPGPVTWLLPCRPSTPR--WLRGQFETLAVRVTAHPQAAQLCRDFGGAL 122

Query: 136 AIPSANRSG---QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              SAN +G     S   V       +C E      G +      STI++ Q ++ +R
Sbjct: 123 VSTSANPAGLEPARSPQAVADYFPDMVCAE------GEVDVSAQPSTILDAQTQRVIR 174


>gi|259909962|ref|YP_002650318.1| Putative DNA topoisomerase, fragment [Erwinia pyrifoliae Ep1/96]
 gi|224965584|emb|CAX57116.1| Putative DNA topoisomerase, fragment [Erwinia pyrifoliae Ep1/96]
          Length = 181

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D   +    + + LS    
Sbjct: 14  IAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGLILIAADYQQLIPWIADEQLSAEQK 73

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138
           A++F  WPGP+T VL   STT      T    T   RV   P      L   +G PL   
Sbjct: 74  ARMFSRWPGPVTWVLPARSTTP--GWLTGQFTTLAVRVSDHP--DVIALCHAFGKPLVST 129

Query: 139 SANRSGQISITNVKHILSS 157
           SAN +G     +V  +L+ 
Sbjct: 130 SANLTGLPPCRHVAEVLAQ 148


>gi|21672740|ref|NP_660807.1| hypothetical protein BUsg475 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091574|sp|Q8K977|RIMN_BUCAP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|21623386|gb|AAM68018.1| hypothetical 20.8 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 190

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 10/171 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE ++GL  D  +  A++RL ++KKR     LI   S+ + +K + +   LS    
Sbjct: 23  IAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLILVASNYNQIKMYINESKLSAQQK 82

Query: 85  K---LFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
           K     WPGP T    L+    + P   T    T   R+   F+  KL   +G  L   S
Sbjct: 83  KTMFFHWPGPYTF---LVPANSLVPCWLTGQFDTIAVRISAHFSIIKLCNVFGKALVSTS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           AN S        + +L     K+ P ++ G I      S I+N+   K +R
Sbjct: 140 ANISNMSPCLTREDVL-KDFGKDFP-VLYGHIGNESHPSKIINIVNGKLIR 188


>gi|226943682|ref|YP_002798755.1| Sua5/YciO/YrdC/YwlC family protein [Azotobacter vinelandii DJ]
 gi|226718609|gb|ACO77780.1| Sua5/YciO/YrdC/YwlC family protein [Azotobacter vinelandii DJ]
          Length = 209

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 16/191 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           +R+A E +  G  I  PT+  Y L     N      IRRL ++  R     L+C  SD+S
Sbjct: 17  VRQAVEIVRGGGVIVYPTDASYALGCQLGNKAGLERIRRLRQLDDRHNFT-LVC--SDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FT 124
            +   A VD  +  L K + PGP T +L     +    +HP      +T   R+P     
Sbjct: 74  QLSLFARVDTGAFRLLKTWTPGPYTFILHASREVPRIMLHP----KRRTIGLRIPANPIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L+   G PL   S    G+    +    +   + +++ LI+DGG     LE++ V   
Sbjct: 130 QALLAELGEPLMSASLILPGETLPLSDPEEMRRRLERQVDLIVDGGAGT--LEASTVVSL 187

Query: 185 CEKKVRILRPG 195
            E +  +LR G
Sbjct: 188 LEGEPEVLRVG 198


>gi|327395467|dbj|BAK12889.1| protein yrdC YrdC [Pantoea ananatis AJ13355]
          Length = 190

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S +L+     L     IA PTE V+GL  D  N +A+  L  +K+RP    LI   +D  
Sbjct: 7   SGSLQDCVNHLKQHAVIAYPTEAVFGLGCDPDNESAVMALLALKRRPVEKGLILIAADYG 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +  + S   L+ +   ++F  WPGP+T V+     T      T    +   RV      
Sbjct: 67  QLMPYVSDHVLTAMQRERMFACWPGPVTFVVPAAPHTPR--WLTGQFDSLAIRVSDHPDV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           + L   +G PL   SAN SGQ     V  +
Sbjct: 125 QALCRAFGKPLVSTSANLSGQPPCRTVDEV 154


>gi|317125566|ref|YP_004099678.1| translation factor SUA5 [Intrasporangium calvum DSM 43043]
 gi|315589654|gb|ADU48951.1| translation factor SUA5 [Intrasporangium calvum DSM 43043]
          Length = 255

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPLICHVSDISMVKKHASVDPLSLHL 83
           + +PT+TVYG+  D+ +  A+  +   K R   M P +   +  +       V   +  L
Sbjct: 30  VVLPTDTVYGVGCDAFDAEAVGAVLAAKGRGRDMPPPVLIPTPRTAHGLATQVPDYAQRL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPGPLTLVL   S+  +H        T   RVP      +L+   G P+A+ SAN 
Sbjct: 90  MERFWPGPLTLVLKAQSS--LHWDLGETNGTVALRVPDNEVALELLRDIG-PMAVTSANS 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           +G  +   V       + + + + +DGG S     STI++   ++  R LR G L
Sbjct: 147 TGAPAARTVDEA-EGMLGESVAVYLDGGPSTDAAPSTIIDCTGDEP-RTLRLGAL 199


>gi|218247212|ref|YP_002372583.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801]
 gi|218167690|gb|ACK66427.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801]
          Length = 217

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 14/198 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +  PT+TVY +  D  N  A++R+ ++K+     PL    S +S +  +A V  
Sbjct: 24  LQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSNIADYALVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135
            +  + K   PGP T    LL  T + P  + +   KT   RVP     + +++  G+P+
Sbjct: 84  EAYRIMKRVIPGPYTF---LLPATKLVPKLVMSPKRKTTGIRVPNHSICQMILQNLGNPI 140

Query: 136 AIPSA---NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
              SA   +  G+     + K  L   +  ++ LIID G+   G E STI+++  E+   
Sbjct: 141 VSSSAHLPDEDGEFPTLELEKAKLFDRLDHQVDLIIDNGLEP-GFEVSTILDMTSEEPAV 199

Query: 191 ILRPGGLEIETLKRAISV 208
           I +  GL  + L+  +++
Sbjct: 200 IRQ--GLGWDELQNWLNI 215


>gi|294638016|ref|ZP_06716276.1| protein RimN [Edwardsiella tarda ATCC 23685]
 gi|291088808|gb|EFE21369.1| protein RimN [Edwardsiella tarda ATCC 23685]
          Length = 190

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           IA PTE V+GL  D  + +A++ L ++K+RP    LI   +D   +  +   + L     
Sbjct: 23  IAYPTEAVFGLGCDPDSESAVQALLDLKQRPWDKGLILIAADYQQLLPYVCDEALQGERR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPGP+T V+   +  D     T    T   RV      ++L   YG PL   SA
Sbjct: 83  TAVFARWPGPVTWVMP--ARDDTPRWLTGRFSTLAVRVSAHPMVQQLCRAYGKPLVSTSA 140

Query: 141 NRSG 144
           N SG
Sbjct: 141 NLSG 144


>gi|107102729|ref|ZP_01366647.1| hypothetical protein PaerPA_01003796 [Pseudomonas aeruginosa PACS2]
 gi|218890608|ref|YP_002439472.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Pseudomonas aeruginosa LESB58]
 gi|218770831|emb|CAW26596.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Pseudomonas aeruginosa LESB58]
          Length = 209

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 9/176 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  I  PT++ Y L       TA+ R+  I++    +       D+S + 
Sbjct: 17  VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD     L K   PGP T +L          +HP      +T   RVP C   + L
Sbjct: 77  VYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHP----KRRTIGLRVPNCPIARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +E  G PL   S    G+    N  + +   +  ++ LI+DGG    G  ST++++
Sbjct: 133 LEELGEPLMSVSLIMPGRGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISL 187


>gi|218706890|ref|YP_002414409.1| putative ribosome maturation factor [Escherichia coli UMN026]
 gi|293406880|ref|ZP_06650804.1| ribosome maturation factor [Escherichia coli FVEC1412]
 gi|300896630|ref|ZP_07115147.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1]
 gi|301018860|ref|ZP_07183099.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1]
 gi|218433987|emb|CAR14904.1| putative ribosome maturation factor [Escherichia coli UMN026]
 gi|291425691|gb|EFE98725.1| ribosome maturation factor [Escherichia coli FVEC1412]
 gi|300359507|gb|EFJ75377.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1]
 gi|300399517|gb|EFJ83055.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1]
          Length = 190

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  +  A+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|329295658|ref|ZP_08252994.1| SUA5/yciO/yrdC domain-containing protein [Plautia stali symbiont]
          Length = 191

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  + +A+  L  +K+RP    LI   +D + ++ + +   L+ L  
Sbjct: 24  IAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYAQLEPYIADRELTVLQR 83

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            ++F  WPGP+T V+   ++    P  T    +   RV      + L   +G PL   SA
Sbjct: 84  ERMFASWPGPVTYVVP--ASPHTPPWLTGRFDSLAIRVSDNPQVQALCRGFGKPLVSTSA 141

Query: 141 NRSGQ 145
           N +GQ
Sbjct: 142 NLTGQ 146


>gi|257061454|ref|YP_003139342.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802]
 gi|256591620|gb|ACV02507.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802]
          Length = 217

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 14/198 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +  PT+TVY +  D  N  A++R+ ++K+     PL    S +S +  +A V  
Sbjct: 24  LQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSNIADYALVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135
            +  + K   PGP T    LL  T + P  + +   KT   RVP     + +++  G+P+
Sbjct: 84  EAYRIMKRVIPGPYTF---LLPATKLVPKLVMSPKRKTTGIRVPNHSICQMILQNLGNPI 140

Query: 136 AIPSA---NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
              SA   +  G+     + K  L   +  ++ LIID G+   G E STI+++  E+   
Sbjct: 141 VSSSAHLPDEEGEFPTLELEKAKLFDRLDHQVDLIIDNGLEP-GFEVSTILDMTSEEPAV 199

Query: 191 ILRPGGLEIETLKRAISV 208
           I +  GL  + L+  +++
Sbjct: 200 IRQ--GLGWDELQNWLNI 215


>gi|83719037|ref|YP_442432.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
 gi|167619438|ref|ZP_02388069.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis Bt4]
 gi|257138635|ref|ZP_05586897.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
 gi|83652862|gb|ABC36925.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
          Length = 209

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGG 175


>gi|167570496|ref|ZP_02363370.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           C6786]
          Length = 209

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  VKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  TFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPAHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +   S      N    + + + K+  L+IDGG
Sbjct: 135 ALGQPLLGTTLILSPDDEPLNDPEEIRTRLEKQADLVIDGG 175


>gi|53715189|ref|YP_101181.1| putative translation factor [Bacteroides fragilis YCH46]
 gi|60683124|ref|YP_213268.1| hypothetical protein BF3675 [Bacteroides fragilis NCTC 9343]
 gi|265767017|ref|ZP_06094846.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52218054|dbj|BAD50647.1| putative translation factor [Bacteroides fragilis YCH46]
 gi|60494558|emb|CAH09357.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|263253394|gb|EEZ24870.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301164636|emb|CBW24195.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 187

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+TV+G+  D+ N  A+RR+YEIK+R     ++  V     V+
Sbjct: 5   IKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKRRADSKAMLVLVDSPVKVE 64

Query: 72  KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            +    P ++  L +       + + G   L  +LL+      +   N           F
Sbjct: 65  FYVQDVPSVAWDLIEVADKPLTIIYSGARNLASNLLAEDGSVGIRVTNE---------AF 115

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +++L + +   +   SAN SGQ    N   I
Sbjct: 116 SRRLCQQFRKAIVSTSANVSGQPGAANFNEI 146


>gi|298382621|ref|ZP_06992216.1| ribosome maturation factor [Escherichia coli FVEC1302]
 gi|298276457|gb|EFI17975.1| ribosome maturation factor [Escherichia coli FVEC1302]
          Length = 205

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  +  A+ RL E+K+RP    LI   ++  
Sbjct: 22  GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYE 81

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 82  QLKPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 137

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 138 LVVALCQAYGKPLVSTSANLSG 159


>gi|319764020|ref|YP_004127957.1| sua5/ycio/yrdc/ywlc family protein [Alicycliphilus denitrificans
           BC]
 gi|317118581|gb|ADV01070.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           BC]
          Length = 211

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 10/164 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA--VDSRNPTA-IRRLYEIKKRPAMNPLICHVSDIS 68
           L++A   L  G  +A+PT++ Y L   +D R+    IRR+ +I  +  +  L+C   D+S
Sbjct: 17  LKQAAALLSGGGILAVPTDSSYALVCRLDDRDAVDRIRRVRQINDKHHLT-LLCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126
            +  +A VD     L KL  PGP T +LD  +T ++   +S    KT   RVP     + 
Sbjct: 74  ELASYAHVDNRQYRLLKLATPGPYTFLLD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQM 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           L+E +G PL   +   +G+    N    +     K+I  IID G
Sbjct: 132 LLELHGTPLLATTLIPAGETEPLNDPQEIRERYEKQIDGIIDAG 175


>gi|255011315|ref|ZP_05283441.1| hypothetical protein Bfra3_19388 [Bacteroides fragilis 3_1_12]
 gi|313149125|ref|ZP_07811318.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137892|gb|EFR55252.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 187

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+TV+G+  D+ N  A+RR+YEIK+R     ++  V     V+
Sbjct: 5   IKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKQRADSKAMLVLVDSPVKVE 64

Query: 72  KHASVDP-LSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            +    P ++  L +       + + G   L  +LL+      +   N           F
Sbjct: 65  FYVQDVPSIAWDLMEVADKPLTIIYSGARNLASNLLAEDGSVGIRVTNE---------AF 115

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +++L + +   +   SAN SGQ    N   I
Sbjct: 116 SRRLCQQFRKAIVSTSANISGQPGAANFNEI 146


>gi|310765560|gb|ADP10510.1| Putative DNA topoisomerase [Erwinia sp. Ejp617]
          Length = 181

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D   +    + + LS    
Sbjct: 14  IAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGLILIAADYQQLIPWIADEQLSAEQK 73

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A++F  WPGP+T VL   STT      T    T   RV        L   +G PL   SA
Sbjct: 74  ARMFSRWPGPVTWVLPARSTTP--GWLTGQFTTLAVRVSDHPDVIALCHAFGKPLVSTSA 131

Query: 141 NRSGQISITNVKHILSS 157
           N +G     +V  +L+ 
Sbjct: 132 NLTGLPPCRHVAEVLAQ 148


>gi|330897267|gb|EGH28686.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 209

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +  + +   +  ++ LIIDGGI      ST++N+  E 
Sbjct: 133 LEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGFS-ASTVINL-AEG 190

Query: 188 KVRILRPG 195
           + +I+R G
Sbjct: 191 EPQIVRVG 198


>gi|299067192|emb|CBJ38388.1| conserved protein of unknown function, translation factor domain
           (SUA5) [Ralstonia solanacearum CMR15]
          Length = 207

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E + AG  IA+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD       K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLE--ATKEVPRRLSHPSRKTIGLR 122

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G  +  N    + + + +++ L+IDGG
Sbjct: 123 VPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRARLERQLELVIDGG 175


>gi|331664895|ref|ZP_08365796.1| protein YrdC [Escherichia coli TA143]
 gi|331057405|gb|EGI29391.1| protein YrdC [Escherichia coli TA143]
          Length = 190

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  +  A+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +K +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTMLTDAQRETIFSHWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|311277763|ref|YP_003939994.1| SUA5/yciO/yrdC domain-containing protein [Enterobacter cloacae
           SCF1]
 gi|308746958|gb|ADO46710.1| SUA5/yciO/yrdC domain protein [Enterobacter cloacae SCF1]
          Length = 190

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---ASVDPLSL 81
           IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +    +K +   + + P   
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYIDDSVLTPAQR 82

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
                 WPGP+T V      T      T    +   RV        L E YG PL   SA
Sbjct: 83  EAVFARWPGPVTFVFPAREQTPR--WLTGKFDSLAVRVTDHPLVVALCEAYGKPLVSTSA 140

Query: 141 NRSGQISITNVKHILSSSICKEIPLII 167
           N +G         +L +   +  P+++
Sbjct: 141 NLTGLPPCRTTAEVL-AQFGEHFPVVV 166


>gi|225010857|ref|ZP_03701325.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005065|gb|EEG43019.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-3C]
          Length = 206

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 16/205 (7%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54
           Q++ I  +N    AL K    L  G  I  PT+TVYG+  D  N  A+ +L ++K     
Sbjct: 3   QLIKIYPNNPQEAALEKVVRALRDGALIIYPTDTVYGIGCDITNNKALEKLAKLKGVKLE 62

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
            A    IC  +D+S +  +   +D  +  + K   PGP T V   L   +  P +    K
Sbjct: 63  KATWSFIC--ADLSNISDYVKQIDTATFKILKRSLPGPYTFV---LPGNNNLPKAFKKRK 117

Query: 114 TACFRVPC-GFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGI 171
           T   RVP     KK++E  G+P+   S     ++   T    ++       +  +IDGG 
Sbjct: 118 TIGIRVPDHSIPKKIVEMLGNPIVSTSIYDPDEVLEYTTDPELIFEKWSPHVAFVIDGGY 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGG 196
               + STIV++  +    I R  G
Sbjct: 178 GD-NVPSTIVDLSGDSPELIRRGKG 201


>gi|152987724|ref|YP_001347308.1| hypothetical protein PSPA7_1927 [Pseudomonas aeruginosa PA7]
 gi|150962882|gb|ABR84907.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 209

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  I  PT++ Y L       TA+ R+  I++    +       D+S + 
Sbjct: 17  VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD     L K   PGP T +L          +HP      +T   RVP C   + L
Sbjct: 77  VYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHP----KRRTIGLRVPNCPIARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +E  G PL   S    G     N  + +   +  ++ LI+DGG    G  ST++++
Sbjct: 133 LEELGEPLMSVSLIMPGSSEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISL 187


>gi|269103770|ref|ZP_06156467.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163668|gb|EEZ42164.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 185

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PTE V+G+  D  +  A+ +L  +K+RP    LI   +D   +  +     
Sbjct: 11  LQQGEVIGYPTEAVFGVGCDPDSEQAVHKLLALKQRPIEKGLILIAADYDQLLAYVDESQ 70

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           L+   L   K  WPGP+T V+   +   +    T   +T   RV      ++L   +G P
Sbjct: 71  LTTNQLEQIKNSWPGPVTWVMP--TKPSVPKFLTGQFETIAVRVSDHPLVQQLCRQFGKP 128

Query: 135 LAIPSANRSGQ 145
           +   SAN +GQ
Sbjct: 129 ITSTSANLTGQ 139


>gi|281424255|ref|ZP_06255168.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris F0302]
 gi|281401524|gb|EFB32355.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris F0302]
          Length = 189

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T    +R A E +  G  I  PT+TV+G+  D+ N  A+ ++Y IKKR     LIC V 
Sbjct: 1   MTREEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           SD  + +   +V  ++  L       P T++LD     ++     A   +   R+    F
Sbjct: 61  SDARLQRCFRNVPNVAWELLDAA-IKPTTVILD--DAVNVAENLVAEDGSLAMRITSEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +K+L   +  P+   SAN SG+ +  N + I
Sbjct: 118 SKELCYRFQKPVVSTSANVSGEPAAANYEDI 148


>gi|156932272|ref|YP_001436188.1| putative ribosome maturation factor [Cronobacter sakazakii ATCC
           BAA-894]
 gi|212277675|sp|A7MPF3|RIMN_ENTS8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|156530526|gb|ABU75352.1| hypothetical protein ESA_00043 [Cronobacter sakazakii ATCC BAA-894]
          Length = 190

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 14/141 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+G+  D  + TA++RL E+K+RP    LI   ++   +K +  +D  +L   
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANFDQLKPY--IDDAALTAE 80

Query: 85  K---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLA 136
           +   +F  WPGP+T V     +T      T    +   RV   P      L E +G PL 
Sbjct: 81  QREAVFARWPGPVTFVFPAKPSTPR--WLTGRFDSLAVRVTNHPQ--VIALCEAFGKPLV 136

Query: 137 IPSANRSGQISITNVKHILSS 157
             SAN SG       + +L+ 
Sbjct: 137 STSANLSGLEPCRTAQEVLAQ 157


>gi|606216|gb|AAA58079.1| ORF_f176 [Escherichia coli str. K-12 substr. MG1655]
          Length = 176

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   +K +     L+ +  
Sbjct: 9   IAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQR 68

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
             +F  WPGP+T V    +TT      T    +   RV        L + YG PL   SA
Sbjct: 69  ETIFSRWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSA 126

Query: 141 NRSG 144
           N SG
Sbjct: 127 NLSG 130


>gi|295836496|ref|ZP_06823429.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. SPB74]
 gi|197699010|gb|EDY45943.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. SPB74]
          Length = 215

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 47/220 (21%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L   K R      P +    N
Sbjct: 14  ATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLTAKGRGRNMPSPVLIGSPN 73

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTA 110
            L   V+D S           +  L   FWPG LTLV         DL  T         
Sbjct: 74  TLHGLVTDFSET---------AWDLVDAFWPGGLTLVARHQPSLAWDLGDTR-------- 116

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLI 166
              T   R+P      +L+  +G P+A+ S N +G  S       + +L  S+     + 
Sbjct: 117 --GTVAIRMPLHPVAIELLSDFG-PMAVSSGNLTGHPSPETCDAAQEMLGDSVS----VY 169

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           +DGG +   + S+IV+V  E  V +LR G ++ E L++ +
Sbjct: 170 LDGGPTSGNVPSSIVDVSGEVPV-LLRAGVIDTEELRKVV 208


>gi|51244753|ref|YP_064637.1| hypothetical protein DP0901 [Desulfotalea psychrophila LSv54]
 gi|50875790|emb|CAG35630.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 203

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  + L  G  I  PT+T YG+  D  N  A++ L ++KKRP   P     S ++ + 
Sbjct: 15  IKQVVQKLQQGAIICYPTDTGYGIGCDLLNQRAVKALMQLKKRPKNKPFSFMCSGLTHIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++A V   +  L K   PGP T VL    +  +  +     KT   RVP    ++ LI  
Sbjct: 75  EYAHVSNTAYRLLKKNLPGPYTFVLP--GSKLVPKVMATKQKTVGIRVPDNPISQALITA 132

Query: 131 YGHPL 135
            G+P+
Sbjct: 133 LGNPI 137


>gi|315426713|dbj|BAJ48338.1| translation factor [Candidatus Caldiarchaeum subterraneum]
          Length = 132

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%)

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH-PLAIP 138
            L  A   WPG +T+V+     T++  L TA  KT   R+P      LI    H PL   
Sbjct: 6   ELEAAIRLWPGAVTIVM--AKKTELPELVTAGEKTVGVRMPAHVVPLLIMQKAHRPLVGT 63

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN S + S T +  I  SS+ +++ +++D G +   L ST+V +Q + +V +LR G L 
Sbjct: 64  SANISDEPSATTIDQI-PSSVLEKVDVVVDAGRTHHLLPSTVVKIQ-DGQVVVLREGVLS 121

Query: 199 IETLKRAISV 208
            E +++ I +
Sbjct: 122 REEIEKRIGL 131


>gi|50954445|ref|YP_061733.1| translation factor [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950927|gb|AAT88628.1| translation factor [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 232

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 94/212 (44%), Gaps = 26/212 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R A   +  G  + IPT+TVYG+A D+ +P A++RL + K R   +P    V  ++ 
Sbjct: 15  TGMRLARGAIGRGELVVIPTDTVYGVAADAFSPAAVQRLLDAKGRGRQSPPPVLVPGLAA 74

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCG-F 123
           +   A   P  +  L + FWPG LT+VL         PL    L     T   R+P    
Sbjct: 75  LAALAERVPAEVEALVEAFWPGGLTIVL------PAAPLLVWGLGETSGTVALRMPQDRI 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------ 177
             +L+   G PLA+ SAN SG+ +           +   + + +DGG +    +      
Sbjct: 129 ALELLAETG-PLAVSSANLSGRPAARTAVEA-EGMLGDAVAVYLDGGEAGSAYDRVEGRD 186

Query: 178 --STIVNVQC----EKKVRILRPGGLEIETLK 203
             STI++          +RILR G +  E L+
Sbjct: 187 SSSTILDATALASGSGGLRILRHGVVTAERLR 218


>gi|323496967|ref|ZP_08101995.1| Sua5/YciO/YrdC family protein [Vibrio sinaloensis DSM 21326]
 gi|323318041|gb|EGA71024.1| Sua5/YciO/YrdC family protein [Vibrio sinaloensis DSM 21326]
          Length = 185

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  IA PTE V+G+  D  NP AI +L  +K+RP    LI   +    +  +
Sbjct: 6   QALNALKQGEVIAYPTEGVFGVGCDPDNPEAIEKLLTLKQRPVEKGLILIAASYQQLLPY 65

Query: 74  ASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                LS   L      WPGP+T ++    +  +    +    +   RV      +K+  
Sbjct: 66  IDETQLSEEQLKRVHQTWPGPVTWIMP--CSDKVSSWVSGQFDSIAVRVTDHPLVQKMCN 123

Query: 130 TYGHPLAIPSANRSGQ 145
            +G PL   SAN +G+
Sbjct: 124 AFGKPLTSTSANLTGE 139


>gi|319785842|ref|YP_004145317.1| SUA5/yciO/yrdC domain [Pseudoxanthomonas suwonensis 11-1]
 gi|317464354|gb|ADV26086.1| SUA5/yciO/yrdC domain [Pseudoxanthomonas suwonensis 11-1]
          Length = 187

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 20/143 (13%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
            A + L  G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   + +  V+  
Sbjct: 9   SAADLLRRGGVIAYPTEAVWGLGCDPGNEAAVLRLLRIKQRPVEKGMIVVAAGLEAVRPW 68

Query: 74  ASVDPLSLHLAKL----------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
                  L LA+L           WPGP T  +   ST    P  T + ++   R+    
Sbjct: 69  -------LDLAQLPAGRMTEVAASWPGPNTWAIP--STPLAPPWVTGSHRSLAVRISAHP 119

Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145
               L E +G P+   SAN +GQ
Sbjct: 120 VVVALCEAFGGPVVSTSANLAGQ 142


>gi|307153963|ref|YP_003889347.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7822]
 gi|306984191|gb|ADN16072.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7822]
          Length = 217

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 17/207 (8%)

Query: 13  RKACEFLDA---GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           R+  + +DA   G  +  PT+TVY +  D    +A+ R+ ++K+     PL    S +S 
Sbjct: 15  RQIDQIVDALKRGAIMLYPTDTVYAIGCDMNTKSAVERVRKLKQLSNDKPLTFLSSSLSN 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKK 126
           + ++A V   +  + K   PGP T    LL  T + P  + +   KT   RVP     + 
Sbjct: 75  ISEYAVVTDQAYRIMKRLIPGPYTF---LLPATKLVPKLVMSPKRKTTGIRVPDNEVCQA 131

Query: 127 LIETYGHPLAIPSA---NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STIV 181
           +++T G+P+   SA   +  G      + K  L  S+   + +IID G++  G E STI+
Sbjct: 132 ILQTLGNPIISTSAHLPDDDGDFPTLGLEKARLFDSMDSLVDIIIDTGVNP-GFEVSTIL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISV 208
           ++  ++ V I+R  GL  E L+  I+V
Sbjct: 191 DLTQDEPV-IVRE-GLGWEQLQNWIAV 215


>gi|239982317|ref|ZP_04704841.1| hypothetical protein SalbJ_22996 [Streptomyces albus J1074]
 gi|291454161|ref|ZP_06593551.1| translation factor SUA5 [Streptomyces albus J1074]
 gi|291357110|gb|EFE84012.1| translation factor SUA5 [Streptomyces albus J1074]
          Length = 215

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 37/214 (17%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----NP 59
             LR+A   +  G  + +PT+TVYG+  D+ +P A+  L   K R      P +    N 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGVGADAFSPEAVGDLLTAKGRGRNMPSPVLIGSPNT 74

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTA 115
           L   V+D S           +  L   FWPG LTLV          P    NL     T 
Sbjct: 75  LHGLVTDFSET---------AWDLVDAFWPGALTLV------ARHQPSLQWNLGDTRGTV 119

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGIS 172
             R+P       + T   P+A+ SAN +G  S       +++L  +I     + +DGG +
Sbjct: 120 AVRMPLHPVAIELLTETGPMAVSSANLTGHPSPETCEAARNMLGDAIS----VYLDGGPT 175

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
              + S+IV+V     V +LR G ++ + L++ +
Sbjct: 176 PGIVPSSIVDVTGSVPV-LLRAGAIDADELRKVV 208


>gi|312888915|ref|ZP_07748476.1| translation factor SUA5 [Mucilaginibacter paludis DSM 18603]
 gi|311298605|gb|EFQ75713.1| translation factor SUA5 [Mucilaginibacter paludis DSM 18603]
          Length = 188

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 22/195 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A + L  G  I  PT+T++G+  D+ NP A++++Y +K+R     +I  V   + 
Sbjct: 4   DEVNAALKVLQDGGIILYPTDTIWGIGCDAGNPEAVKKIYALKQRDEAKSMIVLVDSENK 63

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++ + S V  ++  L + +   PLTLV+      ++ P   A   +   RV    F ++L
Sbjct: 64  LESYISQVADVAYDLIE-YAENPLTLVMP--GAKNLAPNLIAADGSVGIRVTKHPFCQQL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---------S 178
           I+    PL   SAN SGQ S  N   I +         IIDG    + LE         S
Sbjct: 121 IQRLRKPLVSTSANISGQPSPKNFNSISAD--------IIDGVDYVVNLEQHDLSEKRPS 172

Query: 179 TIVNVQCEKKVRILR 193
           TI+ ++ + +   +R
Sbjct: 173 TIMRIEPDGRFEFIR 187


>gi|118467540|ref|YP_889200.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118168827|gb|ABK69723.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium smegmatis str.
           MC2 155]
          Length = 221

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 7/202 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +  A   +  G  + +PT+TVYG+  D+ +  A+  L   K R    P+   V   + +
Sbjct: 16  GIASAVSAVKGGRLVVMPTDTVYGIGADAFDSGAVGALLAAKGRGRDMPVGVLVGSWTTI 75

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                SV   +  L + FWPG L+LV+    +       T    +   R+P      +L+
Sbjct: 76  DGLVYSVPRAARELIRAFWPGALSLVVHQAPSLQWDLGDTRG--SVMLRMPLHPVAIELL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A+ SAN SG+ +           +   + + +DGG ++    STIV++     
Sbjct: 134 REVG-PMAVSSANISGRPAAGTATEA-REQLGDLVEVYLDGGPAEQQAASTIVDLTGSDP 191

Query: 189 VRILRPGGLEIETLKRAISVEL 210
            RILR G +  E + R + VE+
Sbjct: 192 -RILRTGPISAEDVARVLDVEV 212


>gi|15598395|ref|NP_251889.1| hypothetical protein PA3199 [Pseudomonas aeruginosa PAO1]
 gi|116051189|ref|YP_789980.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC family protein
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254236161|ref|ZP_04929484.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241887|ref|ZP_04935209.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296388314|ref|ZP_06877789.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC family protein
           [Pseudomonas aeruginosa PAb1]
 gi|313108516|ref|ZP_07794517.1| putative Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa
           39016]
 gi|9949319|gb|AAG06587.1|AE004744_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115586410|gb|ABJ12425.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168092|gb|EAZ53603.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126195265|gb|EAZ59328.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|310881019|gb|EFQ39613.1| putative Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa
           39016]
          Length = 209

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  I  PT++ Y L       TA+ R+  I++    +       D+S + 
Sbjct: 17  VKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD     L K   PGP T +L          +HP      +T   RVP C   + L
Sbjct: 77  VYAKVDTGLFRLLKAHTPGPYTFILSATREVPRMLLHP----KRRTIGLRVPNCPIARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +E  G PL   S    G     N  + +   +  ++ LI+DGG    G  ST++++
Sbjct: 133 LEELGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISL 187


>gi|292899585|ref|YP_003538954.1| hypothetical protein EAM_1875 [Erwinia amylovora ATCC 49946]
 gi|291199433|emb|CBJ46550.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
          Length = 206

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+ G  I  PT++ Y L     + +A+ R++ I++    +       D+S + 
Sbjct: 17  IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERIWRIRQLDGNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       L+E
Sbjct: 77  TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +   I K + LII GG   +G + T V    E   
Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGF--LGQQPTTVIDLTENTP 192

Query: 190 RILRPGGLEIETLK 203
            ++R G  +++  +
Sbjct: 193 EVVREGVGDVQPFR 206


>gi|260775021|ref|ZP_05883921.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609111|gb|EEX35270.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 185

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +A   L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2   DNFEQALLALKNGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L      WPGP+T ++    +  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLTDEQLQKVHQTWPGPVTWIMP--CSDKVSDWVSGQFDSIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQ 145
           K+    G PL   SAN +G+
Sbjct: 120 KMCNALGKPLTSTSANLTGE 139


>gi|325519096|gb|EGC98583.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. TJI49]
          Length = 210

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAVEIVNKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 ALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGG 175


>gi|15827567|ref|NP_301830.1| hypothetical protein ML1136 [Mycobacterium leprae TN]
 gi|221230044|ref|YP_002503460.1| hypothetical protein MLBr_01136 [Mycobacterium leprae Br4923]
 gi|1176863|sp|P45831|Y1136_MYCLE RecName: Full=Uncharacterized protein ML1136
 gi|699330|gb|AAA63091.1| sua5 [Mycobacterium leprae]
 gi|13093117|emb|CAC31517.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933151|emb|CAR71231.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 220

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 7/202 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   L  G  + +PT+TVYG+  D+ +  A+  L   K R    P+   V    
Sbjct: 17  ARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRDMPVGVLVGSWH 76

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            ++      P  +  L + FWPG L+LV+    + +   L  A+  T   R+P      +
Sbjct: 77  TIEGLVYTMPDGARELIRAFWPGALSLVVVHAPSLNWD-LGDAH-GTVMLRMPLHSVAIE 134

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A+ SAN SGQ +  +V       + + + + +D G S     STIV++  E
Sbjct: 135 LLCEVG-PMAVSSANVSGQPAAVDVDGA-RGQLGELVGVYLDAGPSAQQAASTIVDL-TE 191

Query: 187 KKVRILRPGGLEIETLKRAISV 208
              RILR G + +  +   + V
Sbjct: 192 ATPRILRAGPVSVARIAEVLGV 213


>gi|325300388|ref|YP_004260305.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM
           18170]
 gi|324319941|gb|ADY37832.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM
           18170]
          Length = 203

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 22/205 (10%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVS 65
            D + L+   + L+ G  I  PT+T+Y +   +     I ++  +K   P  N L     
Sbjct: 10  NDPDVLQHIVDILNDGGIIIYPTDTMYAMGCHALKERPIEKICRLKNLNPKKNNLSIICY 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----- 120
           D+S + ++A V   +  L K   PGP T +L   S     P    N K    RVP     
Sbjct: 70  DLSNISEYAQVGNATFKLMKRNLPGPFTFILKADSRL---PKIFRNRKEVGIRVPGNPII 126

Query: 121 ---CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
              C      I T   PL     +    I       ++      E+ L+IDGGI   G+E
Sbjct: 127 REICRLLDAPILTTTLPL-----HEGEDIEYVTDPELIDEKFGDEVDLVIDGGIG--GVE 179

Query: 178 -STIVNVQCEKKVRILRPG-GLEIE 200
            ST++N  CE    I+R G G+ IE
Sbjct: 180 PSTVINC-CEDMPEIVRQGKGILIE 203


>gi|300312576|ref|YP_003776668.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1]
 gi|300075361|gb|ADJ64760.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  +A+PT++ Y L     N  A+ R+  I+     + L     D+S + 
Sbjct: 17  IKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVDEKHHLTLLCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
           ++A VD     L K   PG  T +L+  +T ++   LS  + KT   RVP       L+E
Sbjct: 77  QYAKVDNRQYRLLKAATPGAYTFILE--ATKEVPRRLSHPSRKTIGLRVPENRIAHMLLE 134

Query: 130 TYGHPLA-----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G PL      +P  +    + +T+ + I  S + K+I L+ID G   +   +T++++ 
Sbjct: 135 ELGQPLLGTTLILPDDD----LPLTSAEDI-RSHLEKQIDLVIDSGACSLE-PTTVIDLT 188

Query: 185 CEKKVRILRPG 195
            +++  ++R G
Sbjct: 189 DDEQPVLVRQG 199


>gi|292488388|ref|YP_003531270.1| hypothetical protein EAMY_1912 [Erwinia amylovora CFBP1430]
 gi|291553817|emb|CBA20862.1| Uncharacterized protein yciO [Erwinia amylovora CFBP1430]
          Length = 207

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+ G  I  PT++ Y L     + +A+ R++ I++    +       D+S + 
Sbjct: 18  IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERIWRIRQLDGNHNFTLMCRDLSELS 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       L+E
Sbjct: 78  TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +   I K + LII GG   +G + T V    E   
Sbjct: 136 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGF--LGQQPTTVIDLTENTP 193

Query: 190 RILRPGGLEIETLK 203
            ++R G  +++  +
Sbjct: 194 EVVREGVGDVQPFR 207


>gi|146282789|ref|YP_001172942.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri A1501]
 gi|145570994|gb|ABP80100.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri A1501]
 gi|327481127|gb|AEA84437.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri DSM 4166]
          Length = 207

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y +     N   I R+  +++    +       D+S + 
Sbjct: 17  IKQAVEIIRKGGVVVYPTDSSYAIGCSMGNKAGIERIRRLRQLDDKHNFTLACRDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPC-GFTKKL 127
             A VD  +  L K   PGP T++L          +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTAAFRLLKAHLPGPYTIILTATREVPRMLLHP----KRRTIGLRVPALPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G+    +  + +  ++  ++ LIIDGG    GLE++ V    + 
Sbjct: 133 LEELGEPLMSVSLILPGEDLPMSDPYEMRDALEHQVDLIIDGGYG--GLEASTVVSLVDD 190

Query: 188 KVRILRPG 195
           +  ++R G
Sbjct: 191 QPEVVRVG 198


>gi|332749752|gb|EGJ80167.1| ribosome maturation factor [Shigella flexneri 4343-70]
 gi|332998321|gb|EGK17921.1| ribosome maturation factor [Shigella flexneri K-218]
          Length = 190

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+ +    +F  WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSG 144
             L + Y  PL   SAN SG
Sbjct: 125 VALCQAYDKPLVSTSANLSG 144


>gi|330823716|ref|YP_004387019.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           K601]
 gi|329309088|gb|AEB83503.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           K601]
          Length = 211

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L  G  +A+PT++ Y L     +  A+ R+  +++    + L     D+S + 
Sbjct: 17  LKQAAALLSGGGILAVPTDSSYALVCRLDDKDAVDRIRRVRQINDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A VD     L KL  PGP T +LD  +T ++   +S    KT   RVP     + L+E
Sbjct: 77  SYAHVDNRQYRLLKLATPGPYTFLLD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQMLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            +G PL   +   +G+    N    +     K+I  IID G
Sbjct: 135 LHGTPLLATTLIPAGEAEPLNDPQEIRERYEKQIDGIIDAG 175


>gi|238027994|ref|YP_002912225.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1]
 gi|237877188|gb|ACR29521.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1]
          Length = 211

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  VRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLDEKQLLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
             A VD     L K   PGP   VL   +T ++   LS  + KT   RVP    T  ++E
Sbjct: 77  NFAMVDNHQYRLIKSVTPGPYVFVLQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLAVLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +          N    +   + K++ L+IDGG
Sbjct: 135 ALGEPLLGTTLILPPDTDPLNDPEEIRERLEKQVDLVIDGG 175


>gi|318056879|ref|ZP_07975602.1| translation factor SUA5 [Streptomyces sp. SA3_actG]
 gi|318076682|ref|ZP_07984014.1| translation factor SUA5 [Streptomyces sp. SA3_actF]
          Length = 217

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 11/212 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M +   + L  A + L  G  +A+PT   Y L   + +  A R ++ +K+RP   PL+  
Sbjct: 1   MDVLAPDQLPLAAQLLRTGRLVAMPTPRWYMLCARATDFLATRAIFHVKQRPETKPLLLL 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +   + +     +   +  L +  WPG L L L      +  P++ A    A    P G 
Sbjct: 61  LDPTTTIDALFDLSEDARLLTEHLWPGDLALRLPWKPGAE--PIAAAG-SPALVGCPDGI 117

Query: 124 TKKLIETYGHPLA-------IPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175
             +LI T G PLA        P+A  +   ++T  +        K  I  ++DGGI   G
Sbjct: 118 LGRLISTVGEPLAAAVCSISTPAAGAADHPALTVAQVAAFDRRAKAGIAAVVDGGICPHG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
              T+V+   +    + R G +    ++ A++
Sbjct: 178 RHMTVVDCPVDATAHVHREGTVHARAVEAALT 209


>gi|282860060|ref|ZP_06269141.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bivia JCVIHMP010]
 gi|282587148|gb|EFB92372.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bivia JCVIHMP010]
          Length = 189

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++KA E +  G  I  PT+TV+G+  D+ NP A+ ++Y++K+R     LIC V   +
Sbjct: 4   EDDIKKAIEVMRQGGVILYPTDTVWGIGCDATNPEAVAKVYKLKRRDDSKALICLVDSEN 63

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++++  +V  ++  L +     P TL+LD  +  ++ P   A   +   R+    F+ +
Sbjct: 64  RLQRYVRNVPDVAWQLMEAV-TKPTTLILD--NAVNLAPNLIAEDGSIGMRITKEPFSHE 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI 154
           L   +   +   SAN SG+ +  N   I
Sbjct: 121 LCFRFQKAIVSTSANISGEQAAQNYGDI 148


>gi|328954788|ref|YP_004372121.1| SUA5/yciO/yrdC domain protein [Coriobacterium glomerans PW2]
 gi|328455112|gb|AEB06306.1| SUA5/yciO/yrdC domain protein [Coriobacterium glomerans PW2]
          Length = 233

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 17/209 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVD---SRNPTAI--------RRLYEIKKRPAMNP 59
           A+      L AG    IPTETVYG+AV       P A+        RR++ +K+R  +  
Sbjct: 16  AVEAGSAVLTAGGVALIPTETVYGIAVAISAFARPGAMLPDPGSGYRRIFSLKRRDLVQT 75

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           L   VS  + + +    +D  +  LA+ FWPG LTLV+D  +   +     A   T   R
Sbjct: 76  LPLLVSGPADLDRFGLDIDSQTRCLAERFWPGALTLVVD--AAERVPAFMRAADGTIALR 133

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
                    LI+  G PLA  SAN     +  +   +    I   + + ID G +     
Sbjct: 134 ASSSPAVGDLIDACGCPLAATSANTHAMPAPASFAEV-EPRILDGVDVAIDAGPTPCADA 192

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206
           ST++ +  +    +LR G L    ++ A+
Sbjct: 193 STVIRIS-DGAPMVLREGALPSRAIEDAL 220


>gi|311694079|gb|ADP96952.1| Sua5/YciO/YrdC/YwlC family protein [marine bacterium HP15]
          Length = 207

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 10/174 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  I  PT++ Y +     +  A  R+  I++    +       D+S + 
Sbjct: 17  INQAVDILRRGGVIVYPTDSAYAIGCHLGDKQAADRIKRIRRLDDKHNFTLVCRDLSDIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD     L K F PGP T +LD  S      +HP      ++   RVP     ++L
Sbjct: 77  VYAKVDNTQYRLLKNFTPGPYTFILDATSEVPRRLLHP----KRRSVGVRVPDNAIVQEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           +   G P+   +    G+       + +  ++  E+ LIIDGG    G+E+T V
Sbjct: 133 LGELGEPIMSSTLILPGETDPMTDPYEIRETLEHELDLIIDGGFC--GMEATTV 184


>gi|253991647|ref|YP_003043003.1| ribosome maturation factor [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783097|emb|CAQ86262.1| conserved hypothetical Protein [Photorhabdus asymbiotica]
          Length = 189

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS   S A       L A   IA PTE V+GL  D  +  AI  L  +KKRP    LI  
Sbjct: 1   MSNEASPAFENVLTALKAEKVIAYPTEAVFGLGCDPDSVKAINELLILKKRPWQKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +   ++ +     L+    +     WPGP+T V+   S+T      T    T   RV 
Sbjct: 61  ADNYEQLQPYLDDKLLTAKQKEAMFTCWPGPMTWVIPAKSST--SKWLTGQFSTLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSG 144
                K+L   YG PL   SAN +G
Sbjct: 119 DHPLVKQLCTFYGKPLVSTSANLNG 143


>gi|31792494|ref|NP_854987.1| hypothetical protein Mb1333 [Mycobacterium bovis AF2122/97]
 gi|121637230|ref|YP_977453.1| hypothetical protein BCG_1361 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|215426623|ref|ZP_03424542.1| hypothetical protein MtubT9_09614 [Mycobacterium tuberculosis T92]
 gi|224989705|ref|YP_002644392.1| hypothetical protein JTY_1336 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260186240|ref|ZP_05763714.1| hypothetical protein MtubCP_09458 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200354|ref|ZP_05767845.1| hypothetical protein MtubT4_09548 [Mycobacterium tuberculosis T46]
 gi|260204559|ref|ZP_05772050.1| hypothetical protein MtubK8_09663 [Mycobacterium tuberculosis K85]
 gi|289442740|ref|ZP_06432484.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T46]
 gi|289446896|ref|ZP_06436640.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           CPHL_A]
 gi|289573964|ref|ZP_06454191.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis K85]
 gi|289749855|ref|ZP_06509233.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|31618083|emb|CAD94194.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492877|emb|CAL71348.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224772818|dbj|BAH25624.1| hypothetical protein JTY_1336 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289415659|gb|EFD12899.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T46]
 gi|289419854|gb|EFD17055.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           CPHL_A]
 gi|289538395|gb|EFD42973.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis K85]
 gi|289690442|gb|EFD57871.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 217

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 7/203 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +  A   + AG  + +PT+TVYG+  D+ + +A+  L   K R    P+   V    
Sbjct: 14  SRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++    S+   +  L + FWPG L+LV+ + + +    L  A+  T   R+P      +
Sbjct: 74  TIEGLVYSMPDGARELIRAFWPGALSLVV-VQAPSLQWDLGDAH-GTVMLRMPLHPVAIE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A+ SAN SG     + +    S +   + + +D G S+    STIV++   
Sbjct: 132 LLREVG-PMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGA 189

Query: 187 KKVRILRPGGLEIETLKRAISVE 209
              R+LR G +  E +   + V+
Sbjct: 190 TP-RVLRQGPVSTERIAEVLGVD 211


>gi|325913835|ref|ZP_08176194.1| translation factor SUA5 [Xanthomonas vesicatoria ATCC 35937]
 gi|325539910|gb|EGD11547.1| translation factor SUA5 [Xanthomonas vesicatoria ATCC 35937]
          Length = 187

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 7/184 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L  A   L  G  IA PTE V+GL  D    +A+ RL EIK+RP    +I   S I ++
Sbjct: 6   SLDSAVATLRKGGVIAYPTEAVWGLGCDPAQESAVLRLLEIKRRPVDKGVIVVASGIEVL 65

Query: 71  KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +    +D   P         WPGP T +L +  T+      T        R+        
Sbjct: 66  RGWVDIDALEPARRDEVLASWPGPHTWILPV--TSRAPRWVTGTHDGLAVRISAHPLVVA 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +G PL   SAN +G+    + +  L  ++   I  ++ G +  +   + I + +  
Sbjct: 124 LCAAWGAPLVSTSANLAGEPPARS-REALDPALLATIDGVLAGDVGGLAQPTPIRDARTG 182

Query: 187 KKVR 190
           + +R
Sbjct: 183 QSLR 186


>gi|256820827|ref|YP_003142106.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582410|gb|ACU93545.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea DSM
           7271]
          Length = 206

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 13/194 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68
           + +  E L  G  I  PT+TVYGL  D  N  A+ ++  IK      A    +C  SD+ 
Sbjct: 17  INRVVEVLRRGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVC--SDLK 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
            +  +   +D  +  L K   PGP T +   +   +  P      KT   RVP     + 
Sbjct: 75  NLSDYVKQIDTSTFKLLKRTLPGPYTFI---MQGNNNLPKDFKKKKTVGIRVPDNLIART 131

Query: 127 LIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++E  G+P+   S  +    I  T    ++      ++ L+IDGG     + ST++++  
Sbjct: 132 IVEKLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNKVDLVIDGGYGD-NVASTVIDLSG 190

Query: 186 EKKVRILRPGGLEI 199
           +   ++LR G  +I
Sbjct: 191 DAP-KVLREGKGDI 203


>gi|302521937|ref|ZP_07274279.1| translation factor SUA5 [Streptomyces sp. SPB78]
 gi|333024403|ref|ZP_08452467.1| hypothetical protein STTU_1907 [Streptomyces sp. Tu6071]
 gi|302430832|gb|EFL02648.1| translation factor SUA5 [Streptomyces sp. SPB78]
 gi|332744255|gb|EGJ74696.1| hypothetical protein STTU_1907 [Streptomyces sp. Tu6071]
          Length = 215

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 47/220 (21%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L   K R      P +    N
Sbjct: 14  ATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLAAKGRGRNMPSPVLIGSPN 73

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTA 110
            L   V+D S           +  L   FWPG LTLV         DL  T         
Sbjct: 74  TLHGLVTDFSET---------AWDLVDAFWPGGLTLVARHQPSLAWDLGDTR-------- 116

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLI 166
              T   R+P      +L+  +G P+A+ S N +G  S       + +L  S+     + 
Sbjct: 117 --GTVAIRMPLHPVAIELLTEFG-PMAVSSGNLTGHPSPETCDAAQEMLGDSVS----VY 169

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           +DGG +   + S+IV+V  E  V +LR G ++ E L++ +
Sbjct: 170 LDGGPTSGNVPSSIVDVSGEVPV-LLRAGVIDAEELRKVV 208


>gi|184200616|ref|YP_001854823.1| hypothetical protein KRH_09700 [Kocuria rhizophila DC2201]
 gi|183580846|dbj|BAG29317.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 354

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 35/228 (15%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP---LICHVSDISMVKKHASVDPLSL 81
           + +PT+TVYG+  D+ +   ++ L   K R    P   LI     +  +    S D  + 
Sbjct: 30  VVLPTDTVYGIGCDAFSAPGVQGLLGAKGRTREMPPPVLIARPEVMDALADEISDD--AR 87

Query: 82  HLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
            LA+ FWPG LT+V         DL  T            T   RVP    T+ ++E  G
Sbjct: 88  ALARAFWPGALTIVCWARPSLGWDLGETH----------GTVALRVPDDAVTRAVLERVG 137

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--------GLESTIVNVQ 184
            P+A+ SANR+G  +    +      +   + L ++ G   +           STIV+  
Sbjct: 138 -PMAVSSANRTGMPAARTAEQA-REMLQDRVALYLEAGPRPVREPAAGARDAASTIVDCT 195

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
            E  V +LR G + ++ L+  +        ++   P  PG   +  AP
Sbjct: 196 GETPV-VLRHGAITLQRLREVVPAVHGGGTEDAPAPTEPGADPASAAP 242


>gi|326776591|ref|ZP_08235856.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656924|gb|EGE41770.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 215

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+    A+  L + K R    P    +   +
Sbjct: 14  ATGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVLIGSPN 73

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117
            +  H  V   S     L   FWPG LTLV         DL  T            T   
Sbjct: 74  TL--HGLVTDFSEEAWELVDAFWPGALTLVAKHQPSLQWDLGDTR----------GTVAI 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       + T   P+A+ SAN +G  S  +        +   + + +DGG +   + 
Sbjct: 122 RMPLHPVAIELLTEVGPMAVSSANLTGHPSPEDCDAA-QGMLGDSVSVYLDGGPTPGIVP 180

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206
           S+IV+V     V +LR G L  E L++ +
Sbjct: 181 SSIVDVTGATPV-LLRAGALSAEELRKVV 208


>gi|238752653|ref|ZP_04614124.1| Ribosomal modification protein RimN [Yersinia rohdei ATCC 43380]
 gi|238709080|gb|EEQ01327.1| Ribosomal modification protein RimN [Yersinia rohdei ATCC 43380]
          Length = 190

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K + +   LS    
Sbjct: 23  IAYPTEAVFGLGCDPDSENAVNALLALKQRPWQKGLILIAANYEQLKPYVNDSALSDTQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             LF  WPGP+T V+   +  +     T +  +   RV      ++L   YG PL   SA
Sbjct: 83  ETLFSCWPGPVTWVIP--ARPETPRWLTGHFDSLAVRVSDHPLVQQLCLQYGKPLVSTSA 140

Query: 141 NRSGQISITNVKHI 154
           N SGQ     V  +
Sbjct: 141 NLSGQEPCRTVAEV 154


>gi|126666027|ref|ZP_01737007.1| putative translation factor (SUA5) [Marinobacter sp. ELB17]
 gi|126629349|gb|EAZ99966.1| putative translation factor (SUA5) [Marinobacter sp. ELB17]
          Length = 206

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 10/174 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  IA PT++ Y L     + +A  R+  I+K    +       D+S + 
Sbjct: 17  INQAVDILRKGGVIAYPTDSGYALGCHLGDKSASDRIKRIRKLDDKHNFTLVCRDLSDIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD  +  + K + PG  T +LD  S      +HP      +T   RVP       L
Sbjct: 77  TYAKVDNTTYRMLKTYTPGAYTFILDATSEVPRRLLHP----KRRTIGVRVPDNAVVHAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           +  +G P+   +    G+         +  ++  E+ LIIDGG    G+E+T V
Sbjct: 133 LGEFGEPIMSSTLILPGETEPMTDPEDIRDALEHELDLIIDGGFC--GMEATTV 184


>gi|17545860|ref|NP_519262.1| hypothetical protein RSc1141 [Ralstonia solanacearum GMI1000]
 gi|17428154|emb|CAD14843.1| putative rna-binding protein, yrdc [Ralstonia solanacearum GMI1000]
          Length = 207

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 5/173 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T    L R+A E + AG  IA+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFR 118
           L     D+S +   A VD       K   PGP   +L+  +T ++   LS  + KT   R
Sbjct: 65  LTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLE--ATREVPRRLSHPSRKTIGLR 122

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           VP       L+   G PL   +    G  +  N    + + + +++ L+IDGG
Sbjct: 123 VPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRALLERQLELVIDGG 175


>gi|149640123|ref|XP_001515000.1| PREDICTED: similar to putative transmembrane protein TA-2
           [Ornithorhynchus anatinus]
          Length = 878

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 13/187 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  E +  G    IPT+TVY L      P A+ + Y  KK+    P+   +S + 
Sbjct: 613 ASSVKQIAEIMKNGGACGIPTDTVYVLVAACNRPDAVEKAYNTKKQAQDRPMSLWISSLR 672

Query: 69  MVK--KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-----NLKTACFRVP- 120
            ++  KH    P+     +  WP P+++V+      D   L T+       ++   R+P 
Sbjct: 673 QLEPAKHL-FHPILWDFMEAAWPSPISVVVPRGDWIDQLGLKTSARYVGTPRSIAIRIPD 731

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           C  T  LI+  G P+A+ SAN +G+   T+   +  + +  ++  ++  G S   + ST+
Sbjct: 732 CSVTTHLIDLVG-PVAVTSANPTGEADTTHHDQVY-AKLGDKVDGVLCAGPSPENIASTV 789

Query: 181 VNVQCEK 187
           V+  C K
Sbjct: 790 VD--CTK 794


>gi|77166277|ref|YP_344802.1| putative translation factor, SUA5/yciO/yrdC-like [Nitrosococcus
           oceani ATCC 19707]
 gi|254435884|ref|ZP_05049391.1| hypothetical protein NOC27_2947 [Nitrosococcus oceani AFC27]
 gi|123593358|sp|Q3J7C4|RIMN_NITOC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|76884591|gb|ABA59272.1| translation factor SUA5 [Nitrosococcus oceani ATCC 19707]
 gi|207088995|gb|EDZ66267.1| hypothetical protein NOC27_2947 [Nitrosococcus oceani AFC27]
          Length = 185

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   +  G  IA PTE V+GL  D     AI R+ ++K R      I   +D   V+
Sbjct: 8   VRLAARIIRGGGVIAYPTEGVFGLGCDPGRKAAIERILQLKGRSISKGFILIAAD--FVQ 65

Query: 72  KHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             + + PL+       ++ WPGP+T +L   +  D+ P       T   RV        L
Sbjct: 66  LQSYLLPLTASTRSRLEVTWPGPVTWLLP--ARGDVPPWLRGRYDTLAVRVTAHPLAACL 123

Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLI 166
             T GH L   SANR+G+    +   V+    SS+   +P I
Sbjct: 124 CRTLGHALVSTSANRAGRPPAQTTLQVRRSFGSSLDYILPGI 165


>gi|189463821|ref|ZP_03012606.1| hypothetical protein BACINT_00154 [Bacteroides intestinalis DSM
           17393]
 gi|189438771|gb|EDV07756.1| hypothetical protein BACINT_00154 [Bacteroides intestinalis DSM
           17393]
          Length = 187

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 20/164 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ ++ G  I  PT+T++G+  D+ N  A+RR+Y+IK+R     ++       +V 
Sbjct: 5   IKKACQVMNEGGVILYPTDTIWGIGCDATNEEAVRRVYQIKQRSDSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     + ++ W        PLT++       ++     A   +   RV    F+
Sbjct: 59  SPVKVDFYVQDVPEVAWDLIEVADKPLTIIYS--GARNLASNLIAEDGSVGIRVTNEEFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           K L + +   +   SAN SGQ S  N      S I +E+  ++D
Sbjct: 117 KHLCQQFRKAIVSTSANISGQPSPANY-----SEITEELKSMVD 155


>gi|325104975|ref|YP_004274629.1| translation factor SUA5 [Pedobacter saltans DSM 12145]
 gi|324973823|gb|ADY52807.1| translation factor SUA5 [Pedobacter saltans DSM 12145]
          Length = 188

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 3/146 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + KA E L  G  I  PT+T++G+  D+ NP A+ ++Y +K+R     LI  +   + 
Sbjct: 4   DEINKALEVLKNGGLILYPTDTIWGIGCDATNPEAVAKVYALKQRTESKSLIILLDTDNK 63

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
           +  +A+  P   +    +   P+T++    +  ++ P       +   RV    F K+LI
Sbjct: 64  LVSYANDIPDVAYDLIEYAENPMTIIFS--NAKNLAPNVINEDGSVGIRVTSHQFCKELI 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHI 154
           + +  P+   SAN SG  S  N  +I
Sbjct: 122 QRFRKPIVSTSANVSGNPSPKNFSYI 147


>gi|283835700|ref|ZP_06355441.1| hypothetical protein CIT292_10092 [Citrobacter youngae ATCC 29220]
 gi|291068379|gb|EFE06488.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220]
          Length = 190

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 10/136 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L     IA PTE V+G+  D  + TA+ RL  +K+RP    LI   ++   +K + 
Sbjct: 13  AIEVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAANFDQLKPY- 71

Query: 75  SVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
            +D  +L  A+   +F  WPGP+T V    +TT      T    +   RV        L 
Sbjct: 72  -IDDSTLTDAQRQAVFSRWPGPVTFVFPAPATTPR--WLTGRFDSLAVRVTDHPLVVALC 128

Query: 129 ETYGHPLAIPSANRSG 144
           + YG PL   SAN SG
Sbjct: 129 QAYGKPLVSTSANLSG 144


>gi|222111934|ref|YP_002554198.1| sua5/ycio/yrdc/ywlc family protein [Acidovorax ebreus TPSY]
 gi|221731378|gb|ACM34198.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax ebreus TPSY]
          Length = 211

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L +G  +A+PT++ Y L     +  A+ R+  I++    + L     D+S + 
Sbjct: 17  LKQAATLLSSGGILAVPTDSSYALVCRLDDKDAVDRIRRIRQINDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A VD     L KL  PGP T +LD  +T ++   +S    KT   RVP     + L+E
Sbjct: 77  NYAHVDNRQYRLLKLATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQMLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            +G PL   +   +G+    N    +     K++  I+D G
Sbjct: 135 LHGAPLLATTLIPAGESEPLNDPQEIRERFEKQLDGILDAG 175


>gi|326799831|ref|YP_004317650.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
 gi|326550595|gb|ADZ78980.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
          Length = 188

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 4/161 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +N + +A + L +G  I  PT+T++G+  D+ NP A+ ++Y++K R     LI  + +  
Sbjct: 3   NNDINQALQVLKSGGVILYPTDTIWGIGCDATNPEAVDKVYQLKGRSKDKSLIILLDNEH 62

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +    P   +    +   PLT++ D     ++ P   A   +   R+    F ++L
Sbjct: 63  KLASYVQEIPDVAYQLIEYTEKPLTIIYD--GAKNLAPNLVAEDGSIGIRIAKHRFCEQL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           I+ +  P+   SAN SG+ S  N   I S  I   +  I++
Sbjct: 121 IQRFRKPIVSTSANISGEPSPKNFLEI-SDEIKNGVDYIVE 160


>gi|89890533|ref|ZP_01202043.1| SUA5/YciO/YrdC/YwlC domain protein [Flavobacteria bacterium BBFL7]
 gi|89517448|gb|EAS20105.1| SUA5/YciO/YrdC/YwlC domain protein [Flavobacteria bacterium BBFL7]
          Length = 216

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 7/185 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A   L  G  I  PT+T+YG+  D+ N  AI  LY+IKKR     LI  V    M+ 
Sbjct: 35  VREAVTALKKGKVILYPTDTIYGIGCDATNYDAIEELYKIKKRDRSKSLIILVDSFEMLD 94

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++   V  ++  + KL    PLT++ D       + ++  N  T   RV      + LI 
Sbjct: 95  RYIEEVPEMAWQVLKLN-KKPLTIIYDRPKAVAENLIAADN--TLAIRVTNDPVCRALIR 151

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCEKK 188
               P+   SAN SG+ +      I S  +   +  I+D  ++K  +  S+I+ +  +  
Sbjct: 152 GLRKPIVSTSANLSGEKTPVGFIDI-SEELKSRVDHILDLPLAKTNVPPSSIIKISNDGT 210

Query: 189 VRILR 193
           ++ILR
Sbjct: 211 MKILR 215


>gi|254821300|ref|ZP_05226301.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium intracellulare
           ATCC 13950]
          Length = 219

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 7/194 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           + +PT+TVYG+  D+ N  A+  L   K R    P+   V     ++      P     L
Sbjct: 30  VVMPTDTVYGIGADAFNSAAVSVLLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARDL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L+LV+    +     L  A   T   R+P      +L+   G PLA+ SAN 
Sbjct: 90  IRAFWPGALSLVVTQAPSLQWD-LGDAR-GTVMLRMPLHPVAIELLREVG-PLAVSSANI 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ +  +        +   + + ++ G S+ G  STIV++      RILR G +  E +
Sbjct: 147 SGRTAAVDAGEA-RDQLGDLVDVYLEAGPSEQGAASTIVDLTGPTP-RILRLGPVSAERI 204

Query: 203 KRAISVELEYCVDE 216
              + V+ E    E
Sbjct: 205 AEVLGVDPEGLTAE 218


>gi|318607705|emb|CBY29203.1| sua5 YciO YrdC YwlC family protein [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 195

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 14/143 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL    + L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +
Sbjct: 14  ALSDVLQALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQL 73

Query: 71  KKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLS----TANLKTACFRVPCG- 122
           K +     L+      +F  WPGP+T V+        HP +    T +  +   RV    
Sbjct: 74  KPYVDDSALTDSQRETIFSVWPGPVTWVI------PTHPETPRWLTGSFDSLAVRVSDHP 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145
             ++L   YG PL   SAN SGQ
Sbjct: 128 LVQQLCSQYGKPLVSTSANLSGQ 150


>gi|123444060|ref|YP_001008030.1| putative ribosome maturation factor [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|212288235|sp|A1JRY6|RIMN_YERE8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|122091021|emb|CAL13904.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 190

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 14/138 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K +     L+    
Sbjct: 23  IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYVDDSALTDSQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLS----TANLKTACFRVPCG-FTKKLIETYGHPLA 136
             +F  WPGP+T V+        HP +    T +  +   RV      ++L   YG PL 
Sbjct: 83  ETIFSVWPGPVTWVI------PTHPETPRWLTGSFDSLAVRVSDHPLVQQLCSQYGKPLV 136

Query: 137 IPSANRSGQISITNVKHI 154
             SAN SGQ     ++ +
Sbjct: 137 STSANLSGQEPCRTIEEV 154


>gi|110834252|ref|YP_693111.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
 gi|110647363|emb|CAL16839.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
          Length = 207

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 11/196 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP--LICHVSDISM 69
           +R+A E +  G  IA PT+T Y L        A+ RL  +++    +   L+CH  D+S 
Sbjct: 17  IRQAVEVIRGGGLIAYPTDTTYALGCGIGEKNALDRLIRLRQLDKKHEFTLLCH--DLSA 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKL 127
           +  +A VD     L K   PGP T +L    TT++   L     +T   RVP     + L
Sbjct: 75  LAIYAKVDNPDYRLLKAHTPGPYTFILQ--GTTEVPRRLMHPKKRTIGIRVPDHAICQAL 132

Query: 128 IETYGHPLAIPSANR-SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +  +G P+   + +  + +  +T+ + +    +   + L+IDGG     +E+T++++   
Sbjct: 133 LAEHGEPIMTSTCHLPNDEFPLTDPQDV-RDFLDHHVDLVIDGGFCGT-VETTVISLSQG 190

Query: 187 KKVRILRPGGLEIETL 202
           +   ++R G   I+ +
Sbjct: 191 EGPEVVREGAGPIDAI 206


>gi|241767937|ref|ZP_04765486.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax delafieldii 2AN]
 gi|241360895|gb|EER57709.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax delafieldii 2AN]
          Length = 203

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L  G  +A+PT++ Y L     +  A+ RL  I++    + L     D+S + 
Sbjct: 17  LKQAAALLQKGGVVAVPTDSSYALVCHLDDKDAVDRLRRIRQVDDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A VD     L KL  PGP T +L+  +T ++   +S  + KT   RVP     + L+E
Sbjct: 77  NYARVDNRQYRLLKLGTPGPYTFILE--ATKEVPRRVSHPSRKTIGLRVPDRKGLQLLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            +G PL   +   +G+ +  N    +     K +  I+D G     LE T V
Sbjct: 135 LHGAPLLATTLIPAGETAPLNDPQEIRERYEKLVDAIVDAGACP--LEPTTV 184


>gi|295134942|ref|YP_003585618.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87]
 gi|294982957|gb|ADF53422.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87]
          Length = 189

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 5/177 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PT+TV+G+  D+ N  AI +++ +KKR     +IC VSD  M+ ++    P
Sbjct: 15  LKKGGIILYPTDTVWGIGCDATNADAIDKIFALKKRAESKSMICLVSDFKMLNEYVEEVP 74

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
              +    +   P +++ D      +     A   T   RV    F K+L +    PL  
Sbjct: 75  EVAYDILKYAAKPTSIIYD--DPIRVAENIIAEDNTLAIRVTKDPFCKELTKRLRRPLVS 132

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRILR 193
            SAN SGQ +  +   I S  I K +  +++   SK   + S I+ +  +  V+++R
Sbjct: 133 TSANISGQPTPASFSQI-SPEILKGVDYVVNLHRSKKSSKPSAIIKLGNDGTVKVIR 188


>gi|322831110|ref|YP_004211137.1| SUA5/yciO/yrdC domain protein [Rahnella sp. Y9602]
 gi|321166311|gb|ADW72010.1| SUA5/yciO/yrdC domain protein [Rahnella sp. Y9602]
          Length = 189

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 12/128 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL  D  +  A+  L  +KKRP    LI    +   +  +  +D  SL   
Sbjct: 22  IAYPTEAVFGLGCDPDSEQAVEALLALKKRPKDKGLILIADNYQQLLPY--IDDSSLTEQ 79

Query: 85  KL-----FWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
           +L     FWPGP+T V+    ST D     T    +   RV      K+L + +G PL  
Sbjct: 80  QLAHVVSFWPGPVTWVMPAKPSTPD---WLTGRFTSLAVRVTDHPLVKELCQKFGKPLVS 136

Query: 138 PSANRSGQ 145
            SAN +GQ
Sbjct: 137 TSANLNGQ 144


>gi|325955237|ref|YP_004238897.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922]
 gi|323437855|gb|ADX68319.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922]
          Length = 207

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 17/197 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLICHVSDI 67
           A+ +  E L  G  I  P++TVYGL  D  N  A+    RL  +K   +   ++C+  D+
Sbjct: 16  AIDQVVEVLKQGGLIIYPSDTVYGLGCDITNYKAMENLARLKGVKLDKSQFSIVCN--DL 73

Query: 68  SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           S +       P+S     + K   PGP T VL         PL+    KT   RVP    
Sbjct: 74  SHLSNFTR--PISNSTFKVLKRALPGPFTFVLQASGNL---PLAYKGKKTVGIRVPDHLV 128

Query: 125 -KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            ++++E  G+P+A  S     +I   T    +++    K + ++ID G     + S+I++
Sbjct: 129 PRRIVEKLGNPIASTSIYDEDEILEYTTDPELIAEKWDKLVDVVIDSGYGD-NVASSIID 187

Query: 183 VQCEKKVRILRPGGLEI 199
              E ++ ILR G  +I
Sbjct: 188 A-TENEMVILREGKGDI 203


>gi|319899941|ref|YP_004159669.1| translation factor SUA5 [Bacteroides helcogenes P 36-108]
 gi|319414972|gb|ADV42083.1| translation factor SUA5 [Bacteroides helcogenes P 36-108]
          Length = 187

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 15/141 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++       +V 
Sbjct: 5   IKKACQVMSEGGIILYPTDTIWGIGCDATNEDAVRRVYEIKQRSDSKAMLV------LVD 58

Query: 72  KHASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VD     + ++ W        PLT++       ++     A   +   RV    F+
Sbjct: 59  SSVKVDFYVQDVPEIAWDLIDLADKPLTVIYS--GARNLASNLLAEDGSVGIRVTNEEFS 116

Query: 125 KKLIETYGHPLAIPSANRSGQ 145
           K+L   +   +   SAN SGQ
Sbjct: 117 KRLCRQFRKAIVSTSANVSGQ 137


>gi|238921405|ref|YP_002934920.1| hypothetical protein NT01EI_3556 [Edwardsiella ictaluri 93-146]
 gi|238870974|gb|ACR70685.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 189

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++L  A   L     IA PTE V+GL  D  +  A++ L  +K+RP    LI   +D  
Sbjct: 6   SDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILIAADYQ 65

Query: 69  MVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +  +   + L     A +F  WPGP+T V+   +  D     T    T   RV      
Sbjct: 66  QLLPYVCDEALQGERRAAVFSHWPGPVTWVMP--ARADTPRWLTGRFSTLAVRVSAHPQV 123

Query: 125 KKLIETYGHPLAIPSANRSG 144
           ++L  +YG PL   SAN SG
Sbjct: 124 QQLCRSYGKPLVSTSANLSG 143


>gi|317503445|ref|ZP_07961483.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella salivae DSM 15606]
 gi|315665433|gb|EFV05062.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella salivae DSM 15606]
          Length = 189

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 5/151 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T    +R A E +  G  I  PT+TV+G+  D+ N  A+ ++Y IKKR     LIC V 
Sbjct: 1   MTKEEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           SD  + +   +V  ++  L       P T++LD     ++     A   +   R+    F
Sbjct: 61  SDARLQRCFRNVPAVAWELLDAA-VKPTTVILD--DAVNVAENLVAEDGSLAVRITNEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +K+L   +  P+   SAN SG+ +  N   I
Sbjct: 118 SKELCFRFQKPIVSTSANVSGEPAAANYGDI 148


>gi|283850258|ref|ZP_06367547.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. FW1012B]
 gi|283574284|gb|EFC22255.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. FW1012B]
          Length = 212

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 18/206 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  +  PTET + L   + +  A+ R+  IK RPA  PL   V +++ ++
Sbjct: 6   LATAARVLSQGGCLVYPTETFFALGALATHAGALARIVAIKARPATKPLPLLVGELAHLE 65

Query: 72  K---HASVD-PLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +      +D PL      LA  FWPGPL+LV+               +K    RV   +T
Sbjct: 66  RIVPDGFLDGPLGEDFRALAGRFWPGPLSLVVPCREEL------PGLVKDGQGRVSVRWT 119

Query: 125 -----KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  L    G  +   SAN SG+      + +  + +     L+ +G     G  ST
Sbjct: 120 PHPTAAALCRLAGGAIVATSANVSGKPPAARAEDLDPAVVSAADGLVTEGPRPSGGQAST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205
           ++ +   +++ + R G + + TL+ A
Sbjct: 180 VIGLLGGRRLVLFRDGAVAVATLRAA 205


>gi|325103134|ref|YP_004272788.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter saltans DSM 12145]
 gi|324971982|gb|ADY50966.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter saltans DSM 12145]
          Length = 206

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLICHVSDIS 68
           +++  + L  G  I  PT+T+YG+  D  N  AI ++ +   IK   A    +CH  D+S
Sbjct: 15  VQQVVDILKKGGIIIYPTDTIYGMGCDITNQKAIEKIAQLKGIKPEKANFSFVCH--DLS 72

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            + ++   +D  +  L K   PG  T + +  + +++  L  +  KT   RVP     ++
Sbjct: 73  HISQYVKPLDNSTFRLLKKALPGAFTFIFE--ANSNVPKLLASKKKTVGIRVPDNNIARE 130

Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   G+P+   S     + I  +    ++       + +++DGG     + ST+V+   
Sbjct: 131 IVRMLGNPILSTSIRDDDEIIEYSTDPELIYEKYKDLVDVVVDGGYGN-NVASTVVDC-T 188

Query: 186 EKKVRILRPG 195
           E    I+R G
Sbjct: 189 EGDFEIVRQG 198


>gi|218439515|ref|YP_002377844.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424]
 gi|218172243|gb|ACK70976.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424]
          Length = 212

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N +R+  +FL+AG  I +PT+  Y L   +  P AI ++ ++K   +  PLI  +++   
Sbjct: 11  NLVREIEDFLEAGEVIILPTDISYILVAHAFKPRAIAKIAQLKGWNSPQPLIL-LTNRKK 69

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVL-DLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           V++   V P S  L   F P P+TL++    S  D      ++L  AC   P  F   L+
Sbjct: 70  VEEFGVVSPASGKLIDHF-PYPITLIIPKKKSIPDSITAQHSSLFIAC---PDQFIYDLV 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+   +A  S        +  +      ++PLI+DGG  K   + T+++   E  
Sbjct: 126 DQISFPMVCTTAGFSADYKARRYRTAI-QLFEGQVPLIVDGGDCKYDSKGTLIDCTLETP 184

Query: 189 VRILRPGGLEIETLKRAISVELE 211
             IL  G + ++ L R I  E+E
Sbjct: 185 T-ILNFGTVSVDDL-REILPEIE 205


>gi|150024959|ref|YP_001295785.1| translation factor [Flavobacterium psychrophilum JIP02/86]
 gi|149771500|emb|CAL42969.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86]
          Length = 206

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 13/198 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDI 67
           A++K  + L  G  I  PT+TVYGL  D  N  A+ R+ +IK      A    +CH  D+
Sbjct: 16  AIKKVVDVLKNGGLIIYPTDTVYGLGCDITNTKALERIAKIKGIKLEKANFSFVCH--DL 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S +  +   +D  +  + K   PGP T +   L   +  P       T   RVP      
Sbjct: 74  SNISDYVKQIDTATFKILKRALPGPYTFI---LPGNNNLPKEFKKKTTVGIRVPDNNIAL 130

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++++  G+P+   S +   + I  T    ++       + L+IDGG     + STI+++ 
Sbjct: 131 EIVKMLGNPIVSTSIHDDDEVIEYTTDPELIFEKWQNLVDLVIDGGYGD-NVGSTIIDLS 189

Query: 185 CEKKVRILRPGGLEIETL 202
             +   ++R G   ++ L
Sbjct: 190 GHEP-EVIREGKGSLDIL 206


>gi|315224006|ref|ZP_07865847.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287]
 gi|314945977|gb|EFS97985.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287]
          Length = 206

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 13/197 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLIC-HVSDI 67
           + +  E L  G  I  PT+TVYGL  D  N  A+ ++  IK      A    +C  + ++
Sbjct: 17  INRVVEVLRRGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVCPDLKNL 76

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
           S   K   +D  +  L K   PGP T +   +   +  P      KT   RVP     + 
Sbjct: 77  SDYVKQ--IDTSTFKLLKRTLPGPYTFI---MQGNNNLPKDFKKKKTVGIRVPDNLIART 131

Query: 127 LIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++E  G+P+   S  +    I  T    ++      ++ L+IDGG     + ST++++  
Sbjct: 132 IVEKLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNKVDLVIDGGYGD-NVASTVIDLSG 190

Query: 186 EKKVRILRPGGLEIETL 202
           +  V +LR G  +I+  
Sbjct: 191 DAPV-VLREGKGDIDIF 206


>gi|332701317|ref|ZP_08421405.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551466|gb|EGJ48510.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 206

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 8/200 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL---ICHVSD 66
            +   A E +  G  +  PTET+YGL   +  P A  R+  +K RP   PL   +     
Sbjct: 2   TSFHAAIEAIKRGGVVIYPTETLYGLGGSAFLPEAAARVCRLKGRPEGKPLPLVVGSREQ 61

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTK 125
           + +V +    D     LA LFWPGPL++++   +  D+ P +  A   T+          
Sbjct: 62  VGLVTELEDSD--FARLADLFWPGPLSIIVP--ARRDLAPQVKDAEGLTSLRWTAHATAA 117

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L    G PL   SAN SG+ +    + +  + + +    +++      G  ST+V +  
Sbjct: 118 ALCLESGAPLIATSANLSGRPAAARPEDLDPALLAEVDAAVLEHPWPSGGAASTVVRLLG 177

Query: 186 EKKVRILRPGGLEIETLKRA 205
             ++ +LR G +    L++A
Sbjct: 178 CCRLEVLRIGAVPARVLEQA 197


>gi|282879660|ref|ZP_06288391.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella timonensis CRIS
           5C-B1]
 gi|281306608|gb|EFA98637.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella timonensis CRIS
           5C-B1]
          Length = 189

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A E +  G  I  PT+TV+G+  D+ N  A+ ++Y+IKKR     LIC V   + ++
Sbjct: 7   IKNAIEVMKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVDSDARLQ 66

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++    P            P T++LD     ++ P   A   +   R+    F+ +L   
Sbjct: 67  RYVRNVPNVAWDILDIATKPTTIILD--GAINLAPNLIAEDGSIALRITKEPFSHELCYR 124

Query: 131 YGHPLAIPSANRSGQISITNVKHI 154
           +  PL   SAN SG+ +  N   I
Sbjct: 125 FQKPLVSTSANISGEPAAANYNDI 148


>gi|46190984|ref|ZP_00120796.2| COG0009: Putative translation factor (SUA5) [Bifidobacterium longum
           DJO10A]
          Length = 186

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 19/184 (10%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPG--- 90
           +A D RN  AI R+Y +K+RP    L   ++    + +     P  L+ L+  F PG   
Sbjct: 1   MACDPRNKAAIDRIYRLKRRPRYKALQVLLASTDQLDELGLDLPSPLNRLSAAFLPGAFS 60

Query: 91  ------PLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
                 P   +  L  T D  P       T   R+P       I     PLA  SANRSG
Sbjct: 61  PIAVARPDCTLETLADTADGRP------GTQGIRIPNSALCLAILKATGPLAASSANRSG 114

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--CEKKVRILRPGGLEIETL 202
             S   V+  +  +   E+ L +DGG ++  + ST+V         + ILR G +    +
Sbjct: 115 DESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSSTVVKADPYARDGIEILREGVIAQNVI 173

Query: 203 KRAI 206
           ++A+
Sbjct: 174 RKAL 177


>gi|89074767|ref|ZP_01161225.1| Putative Sua5/YciO/YrdC family protein [Photobacterium sp. SKA34]
 gi|89049531|gb|EAR55092.1| Putative Sua5/YciO/YrdC family protein [Photobacterium sp. SKA34]
          Length = 185

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PTE V+G+  D  N  A+ +L  IK+RP    LI   ++   +  +     
Sbjct: 11  LKQGEVIGYPTEAVFGVGCDPDNQDAVEKLLAIKQRPVEKGLILIAANYDQLLSYIDESQ 70

Query: 79  LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           L+    +     WPGP+T V+   +  ++    T    T   RV      ++L   +G P
Sbjct: 71  LTEQQKQTVMATWPGPVTWVMP--TKPNVPSFLTGQFTTIAVRVSDHPLVQRLCLEFGKP 128

Query: 135 LAIPSANRSGQ 145
           +   SAN +GQ
Sbjct: 129 ITSTSANLTGQ 139


>gi|318060716|ref|ZP_07979439.1| hypothetical protein SSA3_22428 [Streptomyces sp. SA3_actG]
 gi|318075507|ref|ZP_07982839.1| hypothetical protein SSA3_01992 [Streptomyces sp. SA3_actF]
          Length = 215

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 47/220 (21%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L   K R      P +    N
Sbjct: 14  ATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLAAKGRGRNMPSPVLIGSPN 73

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTA 110
            L   V+D S           +  L   FWPG LTLV         DL  T         
Sbjct: 74  TLHGLVTDFSET---------AWDLVDAFWPGGLTLVARHQPSLAWDLGDTR-------- 116

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLI 166
              T   R+P      +L+  +G P+A+ S N +G     +    + +L  S+     + 
Sbjct: 117 --GTVAIRMPLHPVAIELLTEFG-PMAVSSGNLTGHPAPETCDAAQEMLGDSVS----VY 169

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           +DGG +   + S+IV+V  E  V +LR G ++ E L++ +
Sbjct: 170 LDGGPTSGNVPSSIVDVSGEVPV-LLRAGVIDAEELRKVV 208


>gi|108800849|ref|YP_641046.1| translation factor SUA5 [Mycobacterium sp. MCS]
 gi|119869989|ref|YP_939941.1| translation factor SUA5 [Mycobacterium sp. KMS]
 gi|126436447|ref|YP_001072138.1| translation factor SUA5 [Mycobacterium sp. JLS]
 gi|108771268|gb|ABG09990.1| translation factor SUA5 [Mycobacterium sp. MCS]
 gi|119696078|gb|ABL93151.1| translation factor SUA5 [Mycobacterium sp. KMS]
 gi|126236247|gb|ABN99647.1| translation factor SUA5 [Mycobacterium sp. JLS]
          Length = 218

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 33/227 (14%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q+   TD    +  +  A   L  G  + +PT+TVYG+  D+ N  A+  L   K R   
Sbjct: 3   QLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRGRD 62

Query: 58  NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVL--------DLLSTTDIHPLS 108
            P+   V     ++      P  +  L + FWPG L+LV+        DL    D H   
Sbjct: 63  MPVPVLVGSWHTIEGLVYTVPHTARELIRAFWPGALSLVVRQAPSLPWDL---GDAH--- 116

Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIP 164
                T   R+P      +L+   G P+A+ SAN SG+   +S  + +  L       + 
Sbjct: 117 ----GTVMLRMPLHPVAIELLREVG-PMAVSSANISGRPAAVSAADAREQLG----DLVD 167

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
           + +D G S+    STIV++      RILR G +  E +   + V  E
Sbjct: 168 VYLDAGPSEQQAASTIVDLSGAHP-RILRTGPVTAEAVAEVLGVNTE 213


>gi|300721401|ref|YP_003710672.1| putative RNA-binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|297627889|emb|CBJ88435.1| putative RNA-binding protein with unique protein fold, with
           YrdC/RibB domain [Xenorhabdus nematophila ATCC 19061]
          Length = 189

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 60/146 (41%), Gaps = 8/146 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS   S A       L  G  IA PTE V+GL  D  +  A++ L  +K RP    LI  
Sbjct: 1   MSNEISPAFDSIVTALKEGKVIAYPTEAVFGLGCDPDSENAVQELLALKNRPWEKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV 119
             +   +  +     LS    +    FWPGP+T V   +    I P   T    T   RV
Sbjct: 61  ADNYERLCSYIDDVQLSDEQKETIFSFWPGPVTWV---IPAKKITPKWLTGKFSTLAVRV 117

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSG 144
                 K+L   YG PL   SAN SG
Sbjct: 118 TDHPLVKQLCSLYGKPLVSTSANLSG 143


>gi|239944289|ref|ZP_04696226.1| hypothetical protein SrosN15_25025 [Streptomyces roseosporus NRRL
           15998]
 gi|239990744|ref|ZP_04711408.1| hypothetical protein SrosN1_25792 [Streptomyces roseosporus NRRL
           11379]
 gi|291447757|ref|ZP_06587147.1| translation factor SUA5 [Streptomyces roseosporus NRRL 15998]
 gi|291350704|gb|EFE77608.1| translation factor SUA5 [Streptomyces roseosporus NRRL 15998]
          Length = 215

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+    A+  L + K R    P    +   +
Sbjct: 14  TTGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVLIGSPN 73

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117
            +  H  V   S     L   FWPG LTLV         DL  T            T   
Sbjct: 74  TL--HGLVTDFSEEAWELVDAFWPGALTLVARHQPSLQWDLGDTR----------GTVAI 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       + T   P+A+ SAN +G  +  +        +   + + +DGG +   + 
Sbjct: 122 RMPLHPVAIELLTEVGPMAVSSANLTGHPAPEDCDAA-QGMLGDSVSVYLDGGPTPGIVP 180

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206
           S+IV+V     V +LR G L  E L++ +
Sbjct: 181 SSIVDVTGATPV-LLRAGALSAEELRKVV 208


>gi|197287104|ref|YP_002152976.1| ribosome maturation factor [Proteus mirabilis HI4320]
 gi|194684591|emb|CAR46453.1| putative RNA-binding protein [Proteus mirabilis HI4320]
          Length = 189

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           IA PTE V+G+  D  + +A+  L E+K+R     LI    +   +K +   + L+    
Sbjct: 22  IAYPTEAVFGVGCDPDSESAVMALLELKQRAIEKGLILIADNYEQLKPYIDDNALTQEQR 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            ++F  WPGP+T V+   STT      T    +   RV      K L   YG PL   SA
Sbjct: 82  ERMFASWPGPITWVIPAKSTT--PKWLTGRFSSLAVRVTDHPIVKALCVAYGKPLVSTSA 139

Query: 141 NRSG 144
           N SG
Sbjct: 140 NLSG 143


>gi|296104990|ref|YP_003615136.1| putative ribosome maturation factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059449|gb|ADF64187.1| putative ribosome maturation factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 200

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 6/153 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A E L     IA PTE V+G+  D  + TA+ RL  +K+RP    LI   ++  
Sbjct: 17  TGSIAHAVEVLKNEEVIAYPTEAVFGVGCDPDSETAVNRLLTLKQRPVEKGLILIAANYE 76

Query: 69  MVKKH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +   + + P         WPGP+T V     TT      T    +   RV      
Sbjct: 77  QLKPYIDDSMLTPAQRDTIFSAWPGPVTFVFPAQPTTPR--WLTGRFDSLAVRVTDHPLV 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
            +L   +G PL   SAN +GQ    + + +L+ 
Sbjct: 135 VELCLAFGKPLVSTSANLTGQPPCRSTEEVLAQ 167


>gi|284923289|emb|CBG36383.1| conserved hypothetical protein [Escherichia coli 042]
          Length = 190

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+  A + L+    IA PTE V+G+  D  + TA+  L E+K+RP    LI   ++  
Sbjct: 7   GDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMLLLELKQRPVDKGLILIAANYE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            ++ +  +D   L  A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLRPY--IDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L + YG PL   SAN SG
Sbjct: 123 LVVALCQAYGKPLVSTSANLSG 144


>gi|282851603|ref|ZP_06260968.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282557571|gb|EFB63168.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 82

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
          +A E L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPLI  VSD  M++ +
Sbjct: 13 EAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPLIVTVSDEKMMENY 72

Query: 74 ASVDP 78
           +  P
Sbjct: 73 VNEVP 77


>gi|332163223|ref|YP_004299800.1| putative ribosome maturation factor [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667453|gb|ADZ44097.1| putative ribosome maturation factor [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861814|emb|CBX71986.1| putative ribosome maturation factor rimN [Yersinia enterocolitica
           W22703]
          Length = 181

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K +     L+    
Sbjct: 14  IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYVDDSALTDSQR 73

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLS----TANLKTACFRVPCG-FTKKLIETYGHPLA 136
             +F  WPGP+T V+        HP +    T +  +   RV      ++L   YG PL 
Sbjct: 74  ETIFSVWPGPVTWVI------PTHPETPRWLTGSFDSLAVRVSDHPLVQQLCSQYGKPLV 127

Query: 137 IPSANRSGQ 145
             SAN SGQ
Sbjct: 128 STSANLSGQ 136


>gi|328885061|emb|CCA58300.1| YrdC or Sua5 family protein, required for
           threonylcarbamoyladenosine (t(6)A) formation in tRNA
           [Streptomyces venezuelae ATCC 10712]
          Length = 215

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 15/203 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+TVYG+  D+ +  A+  L   K R    P    +   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVADLLAAKGRGRNMPTPVLIGSPNT 74

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +  H  V   S     L   FWPG LTLV     +       T    T   R+P      
Sbjct: 75  L--HGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAIRMPLHPVAI 130

Query: 127 LIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + T   P+A+ SAN +G  S  +    + +L  S+     + +DGG +   + S+IV+V
Sbjct: 131 ELLTEVGPMAVSSANLTGHPSPEDCDAAQQMLGDSVS----VYLDGGPTPGIVPSSIVDV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAI 206
             +  V +LR G L  E L++ +
Sbjct: 187 TGKVPV-LLRQGALSPEELRKVV 208


>gi|221134961|ref|ZP_03561264.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola sp. HTCC2999]
          Length = 206

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y +     N +A+ ++  I++    +       D+S + 
Sbjct: 17  IKQAVELIKQGEVVVYPTDSGYSIGCQMDNKSALEQVCRIRELDKTHNFTLMCRDVSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  + K   PGP T V    +T ++   L     KT   RVP       ++E
Sbjct: 77  DYARVDNVAFRILKNNTPGPYTFVFK--ATKEVPKRLQNPKRKTIGIRVPDNPIALAILE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   +    G+ +  +    +   + + + LII GG   +G   T V    E +V
Sbjct: 135 ELGEPMMSTTLILPGETTAESDPEAIREQLERRVGLIIHGGY--LGEHPTTVIDLSEGEV 192

Query: 190 RILRPGGLEI 199
            ILR G  +I
Sbjct: 193 VILREGSGDI 202


>gi|254526812|ref|ZP_05138864.1| possible translation factor [Prochlorococcus marinus str. MIT 9202]
 gi|221538236|gb|EEE40689.1| possible translation factor [Prochlorococcus marinus str. MIT 9202]
          Length = 193

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 24/200 (12%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC----HVSDIS 68
           + A + L++GLPI  PT+T+  +      P     +YE KKR    PLI     H   I 
Sbjct: 7   KSALKTLESGLPIIFPTDTLPAIGC---LPEFSNIIYEFKKRDKDKPLILMGSEHKQLID 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFRVPCGF-TKK 126
            V + A  D    ++A  +WPG LT+V   +  ++ H  + T+N  T   R+P  +  + 
Sbjct: 64  YVNESAKKD--YENIASKYWPGALTMV---IPASERHTTIITSNDLTLGLRIPNSYMAQS 118

Query: 127 LIETYGHPLAIPSANRS---GQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVN 182
           LI   G PL   SAN S   G I++  +     S  I   IP    G IS  G  STI+ 
Sbjct: 119 LIRETG-PLLTSSANLSGFKGSITVEGISQDFPSVKILGPIPW---GKIS--GKASTIIF 172

Query: 183 VQCEKKVRILRPGGLEIETL 202
            +     R++R G + ++ L
Sbjct: 173 WKKSGDWRLIREGEVLVKEL 192


>gi|120405291|ref|YP_955120.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958109|gb|ABM15114.1| translation factor SUA5 [Mycobacterium vanbaalenii PYR-1]
          Length = 220

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 7/203 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A   L  G  + +PT+TVYG+  D+ +  A+  L   K R    P+   V    
Sbjct: 14  DTGIASAISALKGGRLVVMPTDTVYGIGADAFDGEAVAALLAAKGRGRNMPVPVLVGSWH 73

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++      P S   L + FWPG L+LV+    +     L  AN  T   R+P      +
Sbjct: 74  TIQGLVYSVPNSAKELIRAFWPGALSLVVRQAPSLQWD-LGDAN-GTVMLRMPLHPVAIE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A+ SAN SG+             +   + + +DGG ++    STIV++   
Sbjct: 132 LLREVG-PMAVSSANISGRPPAVTAAQA-REQLGDLVEVYLDGGPAEQQAASTIVDLTGA 189

Query: 187 KKVRILRPGGLEIETLKRAISVE 209
              R+LR G + ++ +   + V+
Sbjct: 190 HP-RVLREGPVTLDAIADVLGVD 211


>gi|134296280|ref|YP_001120015.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia vietnamiensis G4]
 gi|134139437|gb|ABO55180.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia vietnamiensis G4]
          Length = 210

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  VKQAADIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD     L K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRLIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175


>gi|194442465|ref|YP_002042654.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194401128|gb|ACF61350.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 190

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +   
Sbjct: 7   TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66

Query: 69  MVKKHASVDPLSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
            +K +  +D   L +A+   +F  WPGP+T V    +TT      T    +   RV    
Sbjct: 67  QLKPY--IDDTILTVAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSG 144
               L   YG PL   SAN SG
Sbjct: 123 LVVALCNAYGKPLVSTSANLSG 144


>gi|198276288|ref|ZP_03208819.1| hypothetical protein BACPLE_02480 [Bacteroides plebeius DSM 17135]
 gi|198270730|gb|EDY95000.1| hypothetical protein BACPLE_02480 [Bacteroides plebeius DSM 17135]
          Length = 230

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+TVY L   +     I R+ ++K   P  N L     D+S +
Sbjct: 42  LQRIVDILNDGGIIIYPTDTVYALGCHALKERPIERICKLKNIDPRKNNLSIICYDLSNI 101

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CG 122
            ++A V   +  L K   PGP T +L+  S     P    N K    RVP        C 
Sbjct: 102 SEYARVSNATFKLMKRNLPGPFTFILNADSRL---PKIFRNRKEVGIRVPDNAIIREICQ 158

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIV 181
                I T   PL          I       ++     +++ LIIDGG    G+E ST++
Sbjct: 159 LLDAPILTTTLPLE-----EGEDIEYITEPELIDEKFGEKVDLIIDGGTG--GIEPSTVI 211

Query: 182 NVQCEKKVRILRPG 195
           N  C+    I+R G
Sbjct: 212 NC-CDDVPEIVRQG 224


>gi|160900844|ref|YP_001566426.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1]
 gi|160366428|gb|ABX38041.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1]
          Length = 214

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 2/160 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L  G  +AIPT++ Y L     +  A+ RL  I++    + L     D+S + 
Sbjct: 17  IKQAADMLRQGAILAIPTDSSYALVCHLDDRPAVERLRRIRQINDKHHLTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
            +A VD     L KL  PGP T +L+  S      LS  + KT   RVP    T+ L+E 
Sbjct: 77  SYARVDNRQYRLLKLATPGPYTFILE-ASKEVPKRLSHPSRKTIGLRVPDRKGTQLLLEQ 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            G PL   +    G+    +    +      E+  I+D G
Sbjct: 136 LGEPLIATTLIPPGETEALHDADAILERFPHELDAIVDAG 175


>gi|121595728|ref|YP_987624.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax sp. JS42]
 gi|120607808|gb|ABM43548.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax sp. JS42]
          Length = 211

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 10/164 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA--VDSRNPT-AIRRLYEIKKRPAMNPLICHVSDIS 68
           L++A   L +G  +A+PT++ Y L   +D ++    IRR+ +I  +  +  L+C   D+S
Sbjct: 17  LKQAATLLSSGGILAVPTDSSYALVCRLDDKDAVDQIRRIRQINDKHHLT-LLCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126
            +  +A VD     L KL  PGP T +LD  +T ++   +S    KT   RVP     + 
Sbjct: 74  ELANYAHVDNRQYRLLKLATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQM 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           L+E +G PL   +   +G+    N    +     K++  I+D G
Sbjct: 132 LLELHGAPLLATTLIPAGESEPLNDPQEIRERFEKQLDGILDAG 175


>gi|29829452|ref|NP_824086.1| hypothetical protein SAV_2910 [Streptomyces avermitilis MA-4680]
 gi|29606560|dbj|BAC70621.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 215

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 31/212 (14%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR------PAM----N 58
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L + K R      P +    N
Sbjct: 14  ATGLREAASAVRRGELVVLPTDTVYGVGADAFSSEAVADLLQSKGRGRNMPTPVLIGSPN 73

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            L   V+D S          ++  L   FWPG LTLV     +       T    T   R
Sbjct: 74  TLHGLVTDFS---------EMAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVR 122

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKI 174
           +P      +L+   G P+A+ SAN +G  +  +    + +L  SI     + +DGG +  
Sbjct: 123 MPLHPVALELLSEVG-PMAVSSANLTGHPAPEDCDAAQEMLGDSIS----VYLDGGPTPG 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            + S+IV+V  +  + +LR G L  E L++ +
Sbjct: 178 IVPSSIVDVSGKIPL-LLREGALSAEELRKVV 208


>gi|22297687|ref|NP_680934.1| hypothetical protein tlr0143 [Thermosynechococcus elongatus BP-1]
 gi|22293864|dbj|BAC07696.1| tlr0143 [Thermosynechococcus elongatus BP-1]
          Length = 213

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 6/191 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +  E L  G  +  PT+TVY +  D  +  A++R+ ++K+     P+    S +S +
Sbjct: 16  AIAQIVEALKEGAVMLYPTDTVYAIGCDMNHKGAVQRVRQLKQLSNDKPVTFLCSSLSNI 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKKL 127
            ++A V   +  L +   PGP T    LL  T + P    N   KT   RVP    ++ L
Sbjct: 76  AQYAYVSDSAYRLMRRLIPGPYTF---LLPATKLVPRLVQNPKRKTTGIRVPDHVVSQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G+P+   SA      +       L  +  K + L+ID G       S+I+++  E 
Sbjct: 133 LTALGNPIISTSARLPDDETYYVNTADLFDAFDKRVDLMIDTGEPPTQQMSSILDLTVEP 192

Query: 188 KVRILRPGGLE 198
            + + +  G E
Sbjct: 193 PLLVRKGRGWE 203


>gi|238763697|ref|ZP_04624656.1| Ribosomal modification protein RimN [Yersinia kristensenii ATCC
           33638]
 gi|238697999|gb|EEP90757.1| Ribosomal modification protein RimN [Yersinia kristensenii ATCC
           33638]
          Length = 190

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K + +   LS    
Sbjct: 23  IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYLNDAALSDTQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPGP+T V+   +  +     T +  +   RV      ++L   YG PL   SA
Sbjct: 83  EAIFSSWPGPVTWVIP--ARPETPRWLTGSFDSLAVRVSDHPLVQQLCSQYGKPLVSTSA 140

Query: 141 NRSGQ 145
           N SGQ
Sbjct: 141 NLSGQ 145


>gi|146306866|ref|YP_001187331.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina ymp]
 gi|145575067|gb|ABP84599.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina ymp]
          Length = 222

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVY--GLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDIS 68
           +++A E + +G  +  PT++ Y  G A+  +N    IRRL ++  +     L+C   D+S
Sbjct: 31  IKQAVEIIRSGGVVVYPTDSSYALGCAIGDKNAVERIRRLRQLDDKHNFT-LVC--RDLS 87

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124
            +   A VD  +  L K   PGP T +L+         +HP      +T   RVP     
Sbjct: 88  QIGLFAKVDTAAFRLLKNHTPGPYTFILNATREVPRMLLHP----KRRTIGLRVPSHPIA 143

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
             L+E  G PL   S    G     +  + +   +  ++ LIIDGG    GLE ST+VN+
Sbjct: 144 LALLEQLGEPLMSVSLILPGDELPMSDPYEMRQILEHQVELIIDGGFG--GLEASTVVNL 201

Query: 184 QCEKKVRILRPG 195
             +    ILR G
Sbjct: 202 -ADDTPEILRVG 212


>gi|284052762|ref|ZP_06382972.1| hypothetical protein AplaP_14933 [Arthrospira platensis str.
           Paraca]
          Length = 203

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 21/185 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81
           I  PT+TV  LA     P     +++ K+RP   PLI   +    + +        L   
Sbjct: 20  ITFPTDTVPALAA---RPDKAEAIFQTKQRPPDKPLILMGATAESLWQFVDSQTWELECW 76

Query: 82  -HLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138
             +A+ +WPG LTLVL   +++ + P ++  +  T   RVP C    ++++  G PLA  
Sbjct: 77  QQIARQYWPGALTLVLP--ASSAVPPAVNPTDPTTIGLRVPKCEIALEILKRTG-PLATT 133

Query: 139 SANRSGQISITNVKHILSSSICKEIPLII----DGGISKIGLESTIVNVQCEKKVRILRP 194
           SAN SGQ  +  V     + I ++ P ++        S   + ST+V         ILR 
Sbjct: 134 SANLSGQPPLLTV-----ADIDRQFPEVLSLKESPPESGSAIPSTVVRWTKNGDWEILRS 188

Query: 195 GGLEI 199
           GG+E+
Sbjct: 189 GGVEL 193


>gi|182435967|ref|YP_001823686.1| hypothetical protein SGR_2174 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178464483|dbj|BAG19003.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 215

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 25/209 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+    A+  L + K R    P    +   +
Sbjct: 14  ATGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVLIGSPN 73

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117
            +  H  V   S     L   FWPG LTLV         DL  T            T   
Sbjct: 74  TL--HGLVTDFSEEAWELVDAFWPGALTLVAKHQPSLQWDLGDTR----------GTVAI 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       + T   P+A+ SAN +G  S  +        +   + + +DGG +   + 
Sbjct: 122 RMPLHPVAIELLTEVGPMAVSSANLTGHPSPEDCDAA-QGMLGDSVSVYLDGGPTPGIVP 180

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206
           S+IV+V     V +LR G L  E L+  +
Sbjct: 181 SSIVDVTGATPV-LLRAGALSAEELRTVV 208


>gi|255535929|ref|YP_003096300.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium
           3519-10]
 gi|255342125|gb|ACU08238.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium
           3519-10]
          Length = 190

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 7/187 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N ++   + L +G  I  PT+T++G+  D+ N  AI +++EIK+R     +I  V  +  
Sbjct: 7   NTMQNLIDTLISGGTILYPTDTIWGIGCDATNVEAINKIFEIKRREKSKSMIVLVESVKR 66

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCGFTKKLI 128
           ++    V  L+  +  L    P+T++ D         L+   ++     + P  + KKLI
Sbjct: 67  LQDIVDVPELAWDIMDLS-EKPVTIIYDNPKGLPAELLAEDGSIGIRLIKDP--YLKKLI 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--STIVNVQCE 186
                PL   SAN SG  S      I S  I   +  + D    K+     S+++ +  +
Sbjct: 124 GKLNKPLVSTSANLSGSKSPMKFSDI-SDEIISSVDAVSDENHDKVSEYSGSSVIRMWMD 182

Query: 187 KKVRILR 193
            +V+ILR
Sbjct: 183 GRVKILR 189


>gi|254423359|ref|ZP_05037077.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7335]
 gi|196190848|gb|EDX85812.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7335]
          Length = 219

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 16/198 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           NALR   + L  G  +  PT+TVY +  D  + +AI+R+ ++K+     PL    + +S 
Sbjct: 18  NALR---DDLRQGAIMLYPTDTVYAIGCDLSSKSAIKRVRQLKQLSNDKPLTFLCASLSN 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKK 126
           V  +A V   +  + K   PGP T    LL  T   P    N K  T   RVP       
Sbjct: 75  VASYAHVTDPAYKIMKRLIPGPYTF---LLPATKAVPKLVINPKRRTTGIRVPNSPLCLS 131

Query: 127 LIETYGHPLAIPSA----NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STI 180
           LIE  G+P+   SA    +RS +  I  + K +L   I K + +++D   +++G + STI
Sbjct: 132 LIEALGNPIISTSAASIVSRSTEDDIDTLSKVMLFDQIEKLVDVVVDSN-TELGHQVSTI 190

Query: 181 VNVQCEKKVRILRPGGLE 198
           V+V     + I R  G +
Sbjct: 191 VDVTDGSPLVIRRGQGWQ 208


>gi|319943942|ref|ZP_08018222.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599]
 gi|319742703|gb|EFV95110.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599]
          Length = 206

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 8/196 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+  E    G  +A+PT+  Y LA    + TA+ R+ +++     + L     D+S + 
Sbjct: 16  IRQVAEQFQTGALVALPTDASYVLACHLEDRTAVDRMRQLRGIDEKHLLTLLCRDLSELS 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
           ++A VD       K + PG  T +L   +T ++   L   + KT   RVP     + L+ 
Sbjct: 76  QYAQVDNRQFRFLKEWTPGAYTFILP--ATREVPRRLMHPSRKTVGLRVPEAPIVQALLA 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCEKK 188
             G PL   S    G  +  +    +   I K I L++DGG  +  LE+T +++V  ++ 
Sbjct: 134 ELGVPLLCASLILPGDENPLSDPDDIEDRIGKRIDLLVDGGAGQ--LEATSVIDVTGDEP 191

Query: 189 VRILRPGGLEIETLKR 204
           V I R G   +E + R
Sbjct: 192 V-IQRVGLGPVEAMLR 206


>gi|91217342|ref|ZP_01254302.1| putative Sua5/yciO/yrdC family protein [Psychroflexus torquis ATCC
           700755]
 gi|91184450|gb|EAS70833.1| putative Sua5/yciO/yrdC family protein [Psychroflexus torquis ATCC
           700755]
          Length = 205

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           L++  + L  G  +  PT+TVYGL  D  N  A   I R+  IK   A    +C   D+S
Sbjct: 17  LKRIVKILKKGGLVIYPTDTVYGLGCDINNTKALEKIARIKGIKLEKANFSFVCQ--DLS 74

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + ++ A +D  +  + K   PGP T +   L   +  P      KT   RVP     + 
Sbjct: 75  NLSEYVAQLDSTTFKILKRNLPGPYTFI---LPGNNKLPSVFKKKKTVGIRVPNNKIVQL 131

Query: 127 LIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L++  G+P+   S  +    I  T    +++    K + ++IDGG     + ST+ ++  
Sbjct: 132 LVQHLGNPIISTSIRDEDDVIEYTTDPELIAEKWGKLVDVVIDGGFGD-NVASTVFDL-T 189

Query: 186 EKKVRILRPG 195
           E + +++R G
Sbjct: 190 ETEPKLIRQG 199


>gi|332708684|ref|ZP_08428656.1| translation factor SUA5 [Lyngbya majuscula 3L]
 gi|332352538|gb|EGJ32106.1| translation factor SUA5 [Lyngbya majuscula 3L]
          Length = 213

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 10/194 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L+ G  +  PT+TVY +  D    +A++R+  +K+     PL    S +S + 
Sbjct: 17  IEKIRESLEDGAVMLYPTDTVYAIGCDVHVKSAVQRVRRLKQLSNDKPLTFLCSSLSNIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLI 128
           K+A V   +  + K   PGP T    LL  T + P  + + N KT   RVP     + L+
Sbjct: 77  KYARVSDPAYRIMKHLIPGPYTF---LLPATKLVPKLVMSPNRKTTGIRVPDHNVCQALL 133

Query: 129 ETYGHPLAIPSA---NRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              GHP+   SA   N+ G      ++   L  ++   + +I+D  +      STI+++ 
Sbjct: 134 SALGHPIISTSAHLPNQDGDTPTVGLERAKLFDALDGLVDIIVDNDLEPGFQVSTILDLT 193

Query: 185 CEKKVRILRPGGLE 198
             + + + +  G +
Sbjct: 194 SSEPMMVRQGLGWD 207


>gi|256419763|ref|YP_003120416.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588]
 gi|256034671|gb|ACU58215.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588]
          Length = 205

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 17/199 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVS 65
           L+   E L  G  I  PT+TVYG+  D   P A+ R+  IK    +NP       IC+  
Sbjct: 15  LKTIVECLKDGGVIIYPTDTVYGMGCDICQPKAVERICRIKH---INPAKAQFSFICY-- 69

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D+S +  +A SVD  +  + K   PGP T +L   ++  +  L      T   RVP    
Sbjct: 70  DLSHLSDYAKSVDTPTFRMLKKALPGPYTFILS--ASRAVPRLLKQKKDTVGIRVPDNNI 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++ +++  G+P+   S      +       I+       + +++DGGI  +   ST+V+ 
Sbjct: 128 SRAIVKELGNPILSTSLPIETYVEEYTDPEIIHEKFGSIVDIVVDGGIGGMTF-STVVDC 186

Query: 184 QCEKKVRILRPGGLEIETL 202
             ++   ++R G    E L
Sbjct: 187 TGDEP-ELIREGAGSWEEL 204


>gi|209525410|ref|ZP_03273950.1| SUA5/yciO/yrdC domain [Arthrospira maxima CS-328]
 gi|209494090|gb|EDZ94405.1| SUA5/yciO/yrdC domain [Arthrospira maxima CS-328]
          Length = 203

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83
           I  PT+TV  LA     P     +++ K+RP   PLI   +    + +   VD L+  L 
Sbjct: 20  ITFPTDTVPALAA---RPDKAEAIFQTKQRPPDKPLILMGATAESLWQF--VDSLAWELE 74

Query: 84  -----AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
                A+ +WPG LTLVL   +++ + P ++  +  T   RVP C    ++++  G PLA
Sbjct: 75  CWQQIARQYWPGALTLVLP--ASSAVPPAVNPTDPTTIGLRVPKCEIALEILKRTG-PLA 131

Query: 137 IPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG--LESTIVNVQCEKKVRIL 192
             SAN SGQ  +     + ++ I ++ P  L +     + G  + ST+V         IL
Sbjct: 132 TTSANLSGQPPL-----LTTADIDRQFPEVLTLKDAPPESGSAIPSTVVRWTKNGDWEIL 186

Query: 193 RPGGLEI 199
           R GG+E 
Sbjct: 187 RRGGVEF 193


>gi|330503928|ref|YP_004380797.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina NK-01]
 gi|328918214|gb|AEB59045.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina NK-01]
          Length = 208

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVY--GLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDIS 68
           +++A E +  G  +  PT++ Y  G A+  +N    IRRL ++  +     L+C   D+S
Sbjct: 17  IKQAVEIIRGGGVVVYPTDSSYALGCAIGDKNAVERIRRLRQLDDKHNFT-LVCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124
            +   A VD  +  L K   PGP T +L+         +HP      +T   RVP     
Sbjct: 74  QIGLFAKVDTAAFRLLKNHTPGPYTFILNATREVPRMLLHP----KRRTIGIRVPSHPIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
             L+E  G PL   S    G     +  + +   +   + LIIDGG    GLE ST+VN+
Sbjct: 130 LALLEQLGEPLMSVSLIMPGDELPMSDPYEMRQILEHHVDLIIDGGFG--GLEASTVVNL 187

Query: 184 QCEKKVRILRPG 195
             ++  ++LR G
Sbjct: 188 -ADESPQVLRVG 198


>gi|269124173|ref|YP_003306750.1| Sua5/YciO/YrdC/YwlC family protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268315499|gb|ACZ01873.1| Sua5/YciO/YrdC/YwlC family protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 183

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 13/183 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+TVYGL     N  A+ ++++IKKR     +I  VS    + K   ++ L   + 
Sbjct: 6   ILFPTDTVYGLG-SLPNKKALDKIFDIKKRDRNKKIIALVSKKETINKIIEINDLIDKII 64

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
             F+PGP+TL+    ST  I  L     +    R+P      ++IE +G  L   SAN S
Sbjct: 65  DKFFPGPITLIAK--STPFIKEL--LGYEDIGVRIPNNKMALEIIEKFGGILMTTSANIS 120

Query: 144 GQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE-IE 200
           G+ +      I    I K +    I D  +S  G+ S+I  +  E  + +LR G +  IE
Sbjct: 121 GKEAPKKYSEI-DEEILKLVDHKYIDDSNLS--GISSSIFKIDGE-NITLLREGNISLIE 176

Query: 201 TLK 203
            +K
Sbjct: 177 LIK 179


>gi|239906926|ref|YP_002953667.1| hypothetical protein DMR_22900 [Desulfovibrio magneticus RS-1]
 gi|239796792|dbj|BAH75781.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 214

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 78/193 (40%), Gaps = 18/193 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI----SMVKKHASVDPLS 80
           +  PTET + L   + N  A+ R+  +K RPA  PL   V ++    ++V    +  PL 
Sbjct: 19  VVYPTETYFALGALADNAAALERIVAVKGRPAHKPLPLLVGELAQLAAVVPPGFAAGPLG 78

Query: 81  L---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-----KKLIETYG 132
                LA LFWPGPL+LV+               +K A  RV   FT       L    G
Sbjct: 79  ADFGELAALFWPGPLSLVVPCREALP------GLVKDADGRVSVRFTPHETAAALCRLAG 132

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
             L   SAN SG       + +          ++  G     G  ST+  ++  K++ I 
Sbjct: 133 GALVATSANVSGGPPAATPEALDPEVTAAVDAVLTAGAPPAGGPASTVAGLRGGKRLTIF 192

Query: 193 RPGGLEIETLKRA 205
           R G   +  LK A
Sbjct: 193 RRGATPLSALKAA 205


>gi|157412681|ref|YP_001483547.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387256|gb|ABV49961.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 193

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 24/200 (12%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC----HVSDIS 68
           + A + L +GLPI  PT+T+  +      P     +YE KKR    PLI     H   I 
Sbjct: 7   KSALKTLKSGLPIIFPTDTLPAIGC---LPEFSNIIYEFKKRDKDKPLILMGAEHKQLID 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFRVPCGF-TKK 126
            V + A  D    ++A  +WPG LT+V   +  ++ H  + T+N  T   R+P  +  + 
Sbjct: 64  YVNESAKKD--YENIASKYWPGALTMV---IPASETHTTIITSNDLTLGLRIPNSYMAQS 118

Query: 127 LIETYGHPLAIPSANRS---GQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVN 182
           LI   G PL   SAN S   G I++  +     S  I   IP    G IS  G  STI+ 
Sbjct: 119 LIRETG-PLLTSSANLSGFKGSITVEGISQDFPSVKILGPIPW---GKIS--GKASTIIF 172

Query: 183 VQCEKKVRILRPGGLEIETL 202
            +     R++R G + ++ L
Sbjct: 173 WKKSGDWRLIREGEVLVKEL 192


>gi|146311854|ref|YP_001176928.1| hypothetical protein Ent638_2202 [Enterobacter sp. 638]
 gi|145318730|gb|ABP60877.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter sp. 638]
          Length = 206

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQMLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+   S    G     +    +   + K++ LII GG   +G + T V    E   
Sbjct: 135 TLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVVDLTEDAP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|318042639|ref|ZP_07974595.1| hypothetical protein SCB01_13075 [Synechococcus sp. CB0101]
          Length = 198

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 18/186 (9%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASV 76
           L AG     PT+T+  LA     P +   L+E+K+RP   P+I   +    + +     +
Sbjct: 15  LQAGEAALFPTDTLPALAT---KPESAELLWELKQRPRHKPVILMAATGQALLECLGQPI 71

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
           +P   H+A  +WPG LTLVL    T    ++P  +    T   R+P C    +L+   G 
Sbjct: 72  EPAWQHMADRYWPGALTLVLPARGTWLEQLNPGGS----TLGLRLPACPAALELLTLSG- 126

Query: 134 PLAIPSANRSGQISITNVKHILS--SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           PLA  SANRSG+ +  + K        + +  P+      +  G  ST++      + ++
Sbjct: 127 PLATTSANRSGEPACLDHKEAAERFPQVAQLAPVPWP---APSGQGSTVIEWLPSGQWQL 183

Query: 192 LRPGGL 197
           LR G L
Sbjct: 184 LRAGAL 189


>gi|300871115|ref|YP_003785987.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira pilosicoli 95/1000]
 gi|300688815|gb|ADK31486.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira pilosicoli 95/1000]
          Length = 196

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 10/188 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +  + ++ G  +  PT+TVYG+  D+ N  AI R+Y IK+R    PL+  + D   +
Sbjct: 16  AVEEVAKVINNGGVVISPTDTVYGMLADAFNVDAINRIYSIKEREREKPLLILLKDSKFI 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
                 +   +  AK+  PG LT ++ L        L   N  T   R+P   + +KL++
Sbjct: 76  NILCEGNIPDIVKAKI--PGELTFIMPLKEIIKKDFLYLKN--TVALRIPKDDYMEKLLK 131

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL  PSAN +G   I +   ++     K + LI++ G  +  L ST+ +    K  
Sbjct: 132 L-TPPLVAPSANPTGYGVIYDGNKLVELYKDK-VDLIVNCGTIEKKLPSTLYDCINNK-- 187

Query: 190 RILRPGGL 197
            +LR G +
Sbjct: 188 -VLRQGSV 194


>gi|325924326|ref|ZP_08185870.1| translation factor SUA5 [Xanthomonas gardneri ATCC 19865]
 gi|325545191|gb|EGD16501.1| translation factor SUA5 [Xanthomonas gardneri ATCC 19865]
          Length = 191

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 13/183 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  IA PTE V+GL  D R   A+ RL  IK+RP    +I   + + ++  H 
Sbjct: 14  AVAALTRGGVIAYPTEAVWGLGCDPRQEAAVLRLLAIKRRPVDKGVIVVAASVDIL--HD 71

Query: 75  SVDPLSLHLAK-----LFWPGPLTLVLDLLSTTDIHPLSTANLKTA-CFRVPCG-FTKKL 127
            VD  +L  A+     + WPGP T +L + +     P   A        R+        L
Sbjct: 72  WVDFDALEPARKQEVLVSWPGPHTWILPVTAQA---PRWVAGAHDGLAVRISAHPVVAAL 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  +
Sbjct: 129 CAAWGAPLVSTSANLAGEPPARS-RQSLDPALLVSIDGVVDGEVGALAQPTQIRDARSGQ 187

Query: 188 KVR 190
            +R
Sbjct: 188 ILR 190


>gi|158521899|ref|YP_001529769.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3]
 gi|158510725|gb|ABW67692.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3]
          Length = 202

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 4/158 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           K  + L  G  +A PT+T Y +  D     ++ ++Y+IK+R    P      D+  + ++
Sbjct: 17  KVVDSLRQGGIVAFPTDTFYAIGCDIMQKKSVEKIYQIKQRHKSKPFSFICCDLKDISEY 76

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A V   +    K   PGP T +L+   +  +     +  KTA  RVP       ++   G
Sbjct: 77  AKVTDYAYRTMKRLLPGPYTFILE--GSRPLPKTMVSKRKTAGIRVPDNAICMAIVRALG 134

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           +P+   +A    +   T+   ++     K + +++DGG
Sbjct: 135 NPVISTTAKLPDKGVFTD-PELIHDHFGKLLDIVVDGG 171


>gi|170722951|ref|YP_001750639.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida W619]
 gi|169760954|gb|ACA74270.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida W619]
          Length = 221

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  +  PT++ Y L     +  AI R+  ++     +       D+S + 
Sbjct: 29  IRQAVEIIRKGGVVVYPTDSAYALGCQIGDKAAIERVRRLRGLDKTHNFTLMCCDMSQLG 88

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD  +  L K   PGP T +L+   T ++   L     +T   RVP  G T  L+ 
Sbjct: 89  LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHEKRRTIGLRVPDHGITLALLA 146

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G        + +   +   + L+IDGG   +   STI+++  ++  
Sbjct: 147 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDLK-ASTIIDLSGDEP- 204

Query: 190 RILRPG 195
            ++R G
Sbjct: 205 EVIREG 210


>gi|86742399|ref|YP_482799.1| translation factor SUA5 [Frankia sp. CcI3]
 gi|86569261|gb|ABD13070.1| translation factor SUA5 [Frankia sp. CcI3]
          Length = 216

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 9/198 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L  A   +  G  + +PT+T+YGL  D+ +  A+  L   K R    P+   V    
Sbjct: 13  ARGLDAAVSTVARGGLVVLPTDTLYGLGADAFDRDAVASLLAAKGRGRNMPVPVLVGSWR 72

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +      + P    L   FWPG LTLV     T  +      +  T   R+P       
Sbjct: 73  TLDGLIERMTPQVRELITAFWPGGLTLVAR--HTPSLRWDLGESRGTVAVRMP--LHPVA 128

Query: 128 IETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           IE  G   P+A+ SAN SGQ   T +   L   +     + +DGG     + STIV+   
Sbjct: 129 IELLGRTGPMAVSSANISGQPPATTIDEAL-HQLGGAADVYLDGGPCPAAVPSTIVDCTG 187

Query: 186 EKKVRILRPGGLEIETLK 203
           E  V +LR G + +  L+
Sbjct: 188 EVPV-VLRSGAIGLTALR 204


>gi|62181908|ref|YP_218325.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129541|gb|AAX67244.1| putative translation factor [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322716394|gb|EFZ07965.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 200

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 7/169 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ +   + ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI
Sbjct: 10  QVNNNLPTGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLI 69

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
              +    +K +     L+    K     WPGP+T V    +TT      T    +   R
Sbjct: 70  LIAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVR 127

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
           V        L   YG PL   SAN SG      V+ +  +    + P++
Sbjct: 128 VTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPVV 175


>gi|90581183|ref|ZP_01236982.1| Putative Sua5/YciO/YrdC family protein [Vibrio angustum S14]
 gi|90437704|gb|EAS62896.1| Putative Sua5/YciO/YrdC family protein [Vibrio angustum S14]
          Length = 185

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PTE V+G+  D  N  A+ +L  IK+RP    LI   ++   +  +     
Sbjct: 11  LKQGEVIGYPTEAVFGVGCDPDNQEAVEKLLAIKQRPVEKGLILIAANYEQLLSYIDESL 70

Query: 79  LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           L+    +     WPGP+T V+   +  ++    T    T   RV      ++L   +G P
Sbjct: 71  LTEQQKQTVMATWPGPVTWVMP--TKPNVPSFLTGQFTTIAVRVSDHPLVQRLCLEFGKP 128

Query: 135 LAIPSANRSGQ 145
           +   SAN +GQ
Sbjct: 129 ITSTSANLTGQ 139


>gi|220933377|ref|YP_002512276.1| putative translation factor, SUA5/YciO/YrdC-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994687|gb|ACL71289.1| putative translation factor, SUA5/YciO/YrdC-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 190

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 20/161 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   + AG  IA PTE V+GL  D RN  A+ RL  IK+R     LI   ++ + ++
Sbjct: 13  VHRAGALIRAGGVIAYPTEAVFGLGCDPRNEEAVARLLAIKQREVSKGLILIAAEAAQLE 72

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            +   +DP +   A   WPGP+T +  +    D     T +  T   RV           
Sbjct: 73  PYLLPLDPQTTARAHAAWPGPVTWLWPV--RPDTPRWLTGDHDTLAVRV----------- 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
             HPLA      +G I  T      S+++  E P   D  +
Sbjct: 120 TDHPLAAALCREAGAIVST------SANLAGEEPARTDAAV 154


>gi|258648509|ref|ZP_05735978.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella tannerae ATCC 51259]
 gi|260851274|gb|EEX71143.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella tannerae ATCC 51259]
          Length = 211

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E L+ G  I  PT+T++G+  D+ NP A++R+Y+IK+R     LI  V   + ++
Sbjct: 29  IRQAVEVLNRGGVILYPTDTIWGIGCDATNPEAVQRVYDIKRRIDSKALITLVDSEAKLQ 88

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +    P +      +   P T+V D  +  ++ P   A   +   R+    F+++L   
Sbjct: 89  FYVRDVPNAAWDIIDYATRPTTIVYD--TVRNLAPNLLAEDGSVGIRITQEPFSRELCAR 146

Query: 131 YGHPLAIPSANRSGQ 145
           +   +   SAN SG+
Sbjct: 147 FRRAIVSTSANVSGE 161


>gi|239816993|ref|YP_002945903.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110]
 gi|239803570|gb|ACS20637.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110]
          Length = 211

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L  G  +A+PT++ Y LA    +  A+ +L  I++    + L     D+S + 
Sbjct: 17  LKQAAALLQRGEIVAVPTDSSYALACHLDDKDAVDQLRRIRQVDEKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD     L K   PGP T +L+  +T ++   +S    KT   RVP      +L+ 
Sbjct: 77  NYARVDNKQYRLLKAATPGPYTFLLE--ATKEVPRRVSHPQRKTIGLRVPDHKVLLELLM 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            +G PL   +    G+    N    +     K+I  +ID G
Sbjct: 135 LHGAPLLATTLIAPGETEALNDAQTIRERFEKQIGAVIDAG 175


>gi|168234459|ref|ZP_02659517.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469757|ref|ZP_03075741.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194456121|gb|EDX44960.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205331622|gb|EDZ18386.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 190

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +   
Sbjct: 7   TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66

Query: 69  MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            +K +     L+    K     WPGP+T V    +TT      T    +   RV    TK
Sbjct: 67  QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRV----TK 120

Query: 126 -----KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
                 L   YG PL   SAN SG      V+ +  +    + P++
Sbjct: 121 HPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPVV 165


>gi|305664811|ref|YP_003861098.1| hypothetical protein FB2170_00860 [Maribacter sp. HTCC2170]
 gi|88707933|gb|EAR00172.1| hypothetical protein FB2170_00860 [Maribacter sp. HTCC2170]
          Length = 189

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 6/191 (3%)

Query: 6   ITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++D  A   +C + L  G  I  PT+TV+G+  D+    A++++Y +K+R     LI  V
Sbjct: 1   MSDFTAEINSCIKVLSEGGLILYPTDTVWGIGCDATKEEAVQKVYALKQREDSKALISLV 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           ++ +M+++H    P   +        P T++ D  +   + P   A   T   RV    F
Sbjct: 61  ANDAMLERHVEQVPEVAYEILDLATKPTTIIYD--NPKGLAPNVIAQDNTMAIRVASDKF 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVN 182
            + LI  +  P+   SAN +GQ +  +   I S  I K +  I++    K     S+I+ 
Sbjct: 119 CQYLINKFRKPIISTSANVTGQSTPKSFSEI-SEPILKGVDYIVNLEHDKKNESASSIIK 177

Query: 183 VQCEKKVRILR 193
           +  +  V+++R
Sbjct: 178 LSNDGTVKVIR 188


>gi|313885913|ref|ZP_07819653.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924668|gb|EFR35437.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 195

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 10/189 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68
           +A+R+A + L  G  I  PT+T++GL  D+ N  A+ RL  +K RP   P++  V SD+ 
Sbjct: 12  SAVREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDVR 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +     +V  ++  L  +    PLT++       ++ P   A+  +   R+      +++
Sbjct: 72  IQSYVRTVPSMAFQLIDVAV-RPLTIIYP--EGRNVAPQLLADDGSIGIRIASDTLCQEI 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
                 PL   SAN +G  S  N   I   L   +   +PL  D  I   G+ S I+ + 
Sbjct: 129 CRMLRRPLVSTSANLAGTSSPHNYSEIDPALIKMVDYVVPLRQDEHID--GMPSDIIKLG 186

Query: 185 CEKKVRILR 193
              +VR++R
Sbjct: 187 INNEVRVIR 195


>gi|218654186|emb|CAN86632.2| C. elegans protein Y48C3A.18b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 143

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLI 128
           K  S   +S  LA    PGP+TL+ + L     + +P     +  AC RVP C     + 
Sbjct: 2   KLVSRQTISDELANCLLPGPVTLMFERLPCLPAEFNP---GVVNVAC-RVPDCPIVSTIC 57

Query: 129 ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCE 186
           +  G PLA  SAN SG  ++ T++ H     +   I LI+D G I   G  STIV++  E
Sbjct: 58  KKLGQPLAQTSANVSGSSLNPTSIDHF--RDLHPNIDLILDAGSIISSGEGSTIVDLTVE 115

Query: 187 KKVRILRPGGLEIETLKRAISVEL 210
              RI+R G  E ET+++  S  L
Sbjct: 116 SGFRIVRSGCAEKETMQKLKSFGL 139


>gi|200386898|ref|ZP_03213510.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603996|gb|EDZ02541.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 190

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +   
Sbjct: 7   TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66

Query: 69  MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +     L+    K     WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI--IDGG 170
             L   YG PL   SAN SG      V+ +  +    + P++  + GG
Sbjct: 125 VALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPVVEGVTGG 171


>gi|241667154|ref|ZP_04754732.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875707|ref|ZP_05248417.1| Sua5/YciO/YrdC/YwlC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841728|gb|EET20142.1| Sua5/YciO/YrdC/YwlC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 204

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD+   +A+PT++ Y LA   ++  AI ++ +I++    +       D+S + 
Sbjct: 17  LKEIANILDSDGVLAVPTDSGYALACRMKSKKAIDKIIKIRELDGKHNFTLSCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++A VD  +  + K + PGP T +L+  +T  +   L T +  T   RV   +  + I  
Sbjct: 77  EYAKVDNSAYRILKRYTPGPFTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYALQAISA 134

Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL I S    GQ  +     ++   +   I ++I+      G EST V    E   
Sbjct: 135 EIGEPLVIGSFILPGQDHVVTDCSVIDDEVMNYIDVVIES--DYCGYESTTVVEMLELPY 192

Query: 190 RILRPGGLEIE 200
           +ILR G  EI+
Sbjct: 193 QILRQGAGEID 203


>gi|78066874|ref|YP_369643.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. 383]
 gi|77967619|gb|ABB08999.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. 383]
          Length = 210

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD       K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    +   + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNEPEEIRERLEKQVDLVIDGG 175


>gi|331007378|ref|ZP_08330567.1| hypothetical protein IMCC1989_1396 [gamma proteobacterium IMCC1989]
 gi|330418812|gb|EGG93289.1| hypothetical protein IMCC1989_1396 [gamma proteobacterium IMCC1989]
          Length = 203

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 8/199 (4%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q+ SI   N     + +A E +  G  +A PT++ Y L     +  A+ R+  I++    
Sbjct: 3   QLFSIHPENPQARFITRAVEIIRKGGLVAYPTDSAYALGCHIGDKFALDRIRGIRQLDKH 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A V+  +  + K F PGP T +L+  S T    L     KT   
Sbjct: 63  HNFTLVCRDLSEIATYAKVNNQAYRMIKNFTPGPFTFILEATSETP-RRLKHPKRKTIGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+E    P+   +     +       + +  ++  ++ L+IDGG    G+
Sbjct: 122 RVPSNPVALALLEELNEPMMTSTLILPNESQPLTDPYDIRETLEHQLELVIDGGFC--GM 179

Query: 177 ESTIVNVQCEKKVRILRPG 195
           E+T V      +  I+R G
Sbjct: 180 EATTVVDMTGDEPVIVRQG 198


>gi|238754208|ref|ZP_04615566.1| Ribosomal modification protein RimN [Yersinia ruckeri ATCC 29473]
 gi|238707704|gb|EEQ00064.1| Ribosomal modification protein RimN [Yersinia ruckeri ATCC 29473]
          Length = 189

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +  + + + L     
Sbjct: 22  IAYPTEAVFGLGCDPDSEKAVNDLLALKQRPWQKGLILIAANYEQLLPYINDEKLDDTQR 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPGP+T V+ +  TT      T +  +   RV      ++L   YG PL   SA
Sbjct: 82  ATIFSSWPGPVTWVIPVRKTTPR--WLTGHFNSLAVRVSDHPLVQQLCTYYGKPLVSTSA 139

Query: 141 NRSG 144
           N SG
Sbjct: 140 NLSG 143


>gi|224098292|ref|XP_002195404.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 865

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 15/188 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  + L  G    IPT+TVY L      P A+ + +  K++    P+   +S + 
Sbjct: 606 ASSVKRIADILRNGGTCGIPTDTVYVLVAACSRPDAVEKAHRSKRQAQDRPMSLWISSLK 665

Query: 69  MVK--KHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFRVP 120
            ++  KH    PL     +  WP P++LV+      D L   D         ++   R+P
Sbjct: 666 QLEPAKHL-FTPLLWDFMEAAWPSPISLVIPRGEWVDFLGMKD-SAKYVGTPQSVAIRIP 723

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C  T  LI+  G P+ + SAN +G+   T+   +  + +  ++  ++ GG S   + ST
Sbjct: 724 DCSVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCGGPSPENIAST 781

Query: 180 IVNVQCEK 187
           +V+  C K
Sbjct: 782 VVD--CTK 787


>gi|193205175|ref|NP_001122661.1| hypothetical protein Y48C3A.18 [Caenorhabditis elegans]
          Length = 171

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 11/144 (7%)

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLI 128
           K  S   +S  LA    PGP+TL+ + L     + +P     +  AC RVP C     + 
Sbjct: 2   KLVSRQTISDELANCLLPGPVTLMFERLPCLPAEFNP---GVVNVAC-RVPDCPIVSTIC 57

Query: 129 ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCE 186
           +  G PLA  SAN SG  ++ T++ H     +   I LI+D G I   G  STIV++  E
Sbjct: 58  KKLGQPLAQTSANVSGSSLNPTSIDHF--RDLHPNIDLILDAGSIISSGEGSTIVDLTVE 115

Query: 187 KKVRILRPGGLEIETLKRAISVEL 210
              RI+R G  E ET+++  S  L
Sbjct: 116 SGFRIVRSGCAEKETMQKLKSFGL 139


>gi|291619138|ref|YP_003521880.1| YrdC [Pantoea ananatis LMG 20103]
 gi|291154168|gb|ADD78752.1| YrdC [Pantoea ananatis LMG 20103]
          Length = 190

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S +L+     L     IA PTE V+GL  D  N +A+  L  +K+RP    LI   +D  
Sbjct: 7   SGSLQDCVNHLKQHAVIAYPTEAVFGLGCDPDNESAVMALLALKRRPVEKGLILIAADYG 66

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +  + S   L+ +   ++F  WPGP+T V+     T      T    +   RV      
Sbjct: 67  QLMPYVSDHVLTAMQRERMFACWPGPVTFVVPAAPHTPR--WLTGQFDSLAIRVSDHPDV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           + L   +  PL   SAN SGQ     V  +
Sbjct: 125 QALCRAFDKPLVSTSANLSGQPPCRTVDEV 154


>gi|88705375|ref|ZP_01103086.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71]
 gi|88700465|gb|EAQ97573.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71]
          Length = 179

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL+ D  +  A++RL ++K+RPA   LI   +D + +       P SL   
Sbjct: 14  IACPTEAVWGLSCDPFSEVAVQRLLDLKQRPAHKGLILVAADEAQLDFLLEGLPESLRQK 73

Query: 85  -KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPSAN 141
            ++ WPGP T ++       + PL     ++   RV  G    + L   +G PL   SAN
Sbjct: 74  IRVSWPGPNTWLVP--HRGRVSPLVHGRFESVAVRV-SGHPDVRALCRVHGGPLVSSSAN 130

Query: 142 RSG 144
            +G
Sbjct: 131 VAG 133


>gi|254247809|ref|ZP_04941130.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124872585|gb|EAY64301.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 210

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD       K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGG 175


>gi|107028721|ref|YP_625816.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054]
 gi|116690120|ref|YP_835743.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia
           HI2424]
 gi|170733453|ref|YP_001765400.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3]
 gi|206560533|ref|YP_002231298.1| hypothetical protein BCAL2171 [Burkholderia cenocepacia J2315]
 gi|105897885|gb|ABF80843.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054]
 gi|116648209|gb|ABK08850.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia
           HI2424]
 gi|169816695|gb|ACA91278.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3]
 gi|198036575|emb|CAR52472.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 210

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD       K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGG 175


>gi|298373254|ref|ZP_06983243.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274306|gb|EFI15858.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 192

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L++A   L AG  I  PT+TV+G+  D+ N  ++ R++EIK+RP+   +I  + D+  
Sbjct: 9   DELKEAVRVLRAGGVILYPTDTVWGIGCDATNHKSVERVFEIKRRPSSKSMIVLLDDMGK 68

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +  +    P ++  L K +   PLT++       ++ P       +   R+     ++ L
Sbjct: 69  IPNYVEDMPDVAWDLVK-YATEPLTVIYQ--KGKNLAPNVVGEDGSIAIRITHEEVSRSL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154
                 PL   SAN SGQ S      I
Sbjct: 126 CRMLCRPLVSTSANMSGQPSAATFGQI 152


>gi|161524350|ref|YP_001579362.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC
           17616]
 gi|189350896|ref|YP_001946524.1| putative translation factor [Burkholderia multivorans ATCC 17616]
 gi|221198404|ref|ZP_03571450.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2M]
 gi|221208919|ref|ZP_03581916.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2]
 gi|221214750|ref|ZP_03587719.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD1]
 gi|160341779|gb|ABX14865.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC
           17616]
 gi|189334918|dbj|BAG43988.1| putative translation factor [Burkholderia multivorans ATCC 17616]
 gi|221165289|gb|EED97766.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD1]
 gi|221171202|gb|EEE03652.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2]
 gi|221182336|gb|EEE14737.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2M]
          Length = 210

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +A+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAVEIVNKGGVVAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD       K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175


>gi|114319880|ref|YP_741563.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226274|gb|ABI56073.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 207

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E + AG  IA PT++ Y L        A+ R+ +I++    +       D+S + 
Sbjct: 17  VKRTVEIIRAGGVIAYPTDSSYALGCGIGEKQAVDRIRQIRRLREDHNFTLACRDLSDIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V+  +  L K   PGP T +L   S      L     KT   RVP    T+ ++E 
Sbjct: 77  TYARVENYAYRLLKSHTPGPYTFILKATSKVP-RLLQHPKKKTIGIRVPDHPTTQAILEE 135

Query: 131 YGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G PL   S       + IT+   I  +++  ++  +IDGG    GLE ST+V++  E  
Sbjct: 136 LGEPLMTVSLIMPDDDMPITDPVDI-RAALEHQVDAVIDGGPG--GLEPSTVVDLSGEAP 192

Query: 189 VRILRPG 195
            R+LR G
Sbjct: 193 -RVLREG 198


>gi|330836515|ref|YP_004411156.1| SUA5/yciO/yrdC domain-containing protein [Spirochaeta coccoides DSM
           17374]
 gi|329748418|gb|AEC01774.1| SUA5/yciO/yrdC domain protein [Spirochaeta coccoides DSM 17374]
          Length = 194

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 26/208 (12%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++S  D  +     + L A   + +P +T+YGL+  +R P     L EIK R A    + 
Sbjct: 6   VISRQDERSAEVVVQCLLADHAVILPCDTIYGLS--ARVPQGENLLREIKGRSADKSFLV 63

Query: 63  HVSDISMVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            ++ + M +  +       HL    +  WP PLT +++           T +  T   RV
Sbjct: 64  -LATLEMARSLSGG-----HLPPGLEEIWPAPLTAIVN-----------TQDGGTIGIRV 106

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--L 176
           P   F +K++E  G P+   S N SG+ ++ +   I S     E   +   G S +G  +
Sbjct: 107 PDDVFIQKILEMVGTPIYSTSVNVSGEKAMLSFDEIFSHYGMDERIALFVIGSSSVGTTM 166

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204
            STIV+    +  RILR G  +  TL R
Sbjct: 167 ASTIVDCTV-RPYRILRQGAYDATTLIR 193


>gi|282861119|ref|ZP_06270184.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE]
 gi|282563777|gb|EFB69314.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE]
          Length = 215

 Score = 52.8 bits (125), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 31/212 (14%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+ +   I  L   K R    P    +   +
Sbjct: 14  TTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEGIADLLAAKGRGRNMPTPVLIGSPN 73

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACF 117
            +  H  V   S     L   FWPG LTLV         DL  T            T   
Sbjct: 74  TL--HGLVTDFSEEAWELVDAFWPGALTLVARHQPSLQWDLGDTR----------GTVAV 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKI 174
           R+P       + T   P+ + SAN +G  S       + +L  S+     + +DGG +  
Sbjct: 122 RMPLHPVAIELLTEVGPMGVSSANLTGHPSPETCDAAQDMLGDSVS----VYLDGGPTPG 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            + S+IV+V  +  V +LR G L +E L++ +
Sbjct: 178 IVPSSIVDVTGKVPV-LLRAGALSVEELRKVV 208


>gi|225012714|ref|ZP_03703149.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-2A]
 gi|225003247|gb|EEG41222.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-2A]
          Length = 182

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 18/134 (13%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+    I  PT+TV+G+  D+  P  + ++Y+IK+R     LI  V DI M+K++    P
Sbjct: 9   LEKKQTILYPTDTVWGIGGDATAPEVVEKIYKIKQRADHKALIVLVKDIEMLKEYVQEIP 68

Query: 79  -LSLHLAK------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
            ++    +      L +P  + L  +LL              +   R+P   F ++L+ +
Sbjct: 69  EVAFSFLEEERPTTLVYPQGINLADNLLGQDG----------SVGIRIPKHSFCQQLLTS 118

Query: 131 YGHPLAIPSANRSG 144
           +G P+   SAN SG
Sbjct: 119 FGKPIISTSANISG 132


>gi|269128126|ref|YP_003301496.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM
           43183]
 gi|268313084|gb|ACY99458.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM
           43183]
          Length = 258

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 94/206 (45%), Gaps = 16/206 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I +PT+TVYG+  D+  P+A++ L + K      P    V   S+    A V+ L  +  
Sbjct: 33  IVLPTDTVYGIGCDAFTPSAVQALLDAKGHGRDRPPAVLVG--SVRAATALVEDLGTYGQ 90

Query: 85  KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
            L   FWPG LTLV           L  A   T   R+P      +L++  G PLA+ +A
Sbjct: 91  DLIDEFWPGALTLVCRANRNLSWD-LGDAK-GTVAVRMPLHDLALELLKETG-PLAVSAA 147

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
            R G     +      S     + + +DGG S     ST++++      R+LR G + ++
Sbjct: 148 ARKGGPPARSAAQA-ESVFGDAVSVCLDGGPSGERQPSTLLDLTGPIP-RLLRAGAVSVD 205

Query: 201 TLKRAIS----VELEYCVDETSTPQS 222
            + RAI+     E +   +ET+ PQ+
Sbjct: 206 RI-RAITGVVMTEEDESAEETAEPQA 230


>gi|168468041|ref|ZP_02701878.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823240|ref|ZP_02835240.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|195628882|gb|EDX48292.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205340492|gb|EDZ27256.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087848|emb|CBY97611.1| putative ribosome maturation factor rimN [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 190

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +   
Sbjct: 7   TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66

Query: 69  MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            +K +     L+    K     WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHI 154
             L   YG PL   SAN SG      V+ +
Sbjct: 125 VALCNAYGKPLVSTSANLSGLPPCRTVEEV 154


>gi|161616428|ref|YP_001590393.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167554199|ref|ZP_02347940.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168245229|ref|ZP_02670161.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264717|ref|ZP_02686690.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194449529|ref|YP_002047427.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197250333|ref|YP_002148323.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198243534|ref|YP_002217366.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|224585197|ref|YP_002638996.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913883|ref|ZP_04657720.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|212288230|sp|A9N8A7|RIMN_SALPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288266|sp|Q57J68|RIMN_SALCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|161365792|gb|ABX69560.1| hypothetical protein SPAB_04243 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407833|gb|ACF68052.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197214036|gb|ACH51433.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197938050|gb|ACH75383.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205321544|gb|EDZ09383.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205336011|gb|EDZ22775.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205346875|gb|EDZ33506.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224469725|gb|ACN47555.1| hypothetical protein SPC_3471 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322615057|gb|EFY11981.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617344|gb|EFY14245.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625566|gb|EFY22391.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626408|gb|EFY23217.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632080|gb|EFY28833.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635041|gb|EFY31764.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643258|gb|EFY39825.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646658|gb|EFY43165.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650004|gb|EFY46423.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652721|gb|EFY49061.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659522|gb|EFY55766.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665536|gb|EFY61723.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670430|gb|EFY66569.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670503|gb|EFY66637.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675079|gb|EFY71162.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681616|gb|EFY77645.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685960|gb|EFY81949.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195830|gb|EFZ81003.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196414|gb|EFZ81565.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202699|gb|EFZ87738.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207304|gb|EFZ92254.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211260|gb|EFZ96105.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216031|gb|EGA00762.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223478|gb|EGA07806.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226792|gb|EGA10982.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231846|gb|EGA15956.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233201|gb|EGA17296.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237268|gb|EGA21333.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245503|gb|EGA29502.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249009|gb|EGA32931.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323250632|gb|EGA34513.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256860|gb|EGA40574.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323263010|gb|EGA46557.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266010|gb|EGA49505.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272767|gb|EGA56170.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|326625147|gb|EGE31492.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 190

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 7/162 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +   
Sbjct: 7   TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66

Query: 69  MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            +K +     L+    K     WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
             L   YG PL   SAN SG      V+ +  +    + P++
Sbjct: 125 VALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPVV 165


>gi|319795295|ref|YP_004156935.1| sua5/ycio/yrdc/ywlc family protein [Variovorax paradoxus EPS]
 gi|315597758|gb|ADU38824.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus EPS]
          Length = 211

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L  G  +A+PT++ Y LA    +  A+ +L  I++    + L     D+S + 
Sbjct: 17  LKQAVTLLARGEIVAVPTDSSYALACHLDDKDAVDQLRRIRQVDEKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD     L K   PGP T +L+  +T ++   +S    KT   RVP      +L+ 
Sbjct: 77  NYARVDNKQYRLLKAATPGPYTFLLE--ATKEVPRRVSHPQRKTIGLRVPDHKVLLELLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            +G PL   +    G+    N    +     K+I  +ID G
Sbjct: 135 LHGAPLLATTLIAPGETEALNDAQTIRERFEKQIGAVIDAG 175


>gi|213626209|gb|AAI69842.1| Unknown (protein for MGC:196569) [Xenopus laevis]
          Length = 912

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T ++++R+  E +  G    IPT+TVY L      P A+ + Y+ K++    P+   +S 
Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690

Query: 67  ISMV--KKHASVDPLSLHLAKLFWPGPLTLV------LDLLSTTDIHPLSTANLKTACFR 118
           +  +   KH    PL     +  WP  ++LV      L++L   +         ++   R
Sbjct: 691 LEQLASAKHL-FSPLLWDFMQKAWPSSISLVIPRGPWLEVLGAKESSKY-IGTPQSIAIR 748

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P C  T  LI+  G P+A+ SAN SG+   T+   +  + +  ++  ++  G S   + 
Sbjct: 749 IPDCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVNGVLCDGPSPENIA 806

Query: 178 STIVNVQCEK 187
           ST+V+  C K
Sbjct: 807 STVVD--CTK 814


>gi|171920600|ref|ZP_02931851.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188524207|ref|ZP_03004268.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867355|ref|ZP_03079359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273280|ref|ZP_03205816.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554273|ref|YP_002284418.1| Sua5/YciO/YrdC/YwlC family protein [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550766|ref|ZP_03771715.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|171903310|gb|EDT49599.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195659977|gb|EDX53357.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660831|gb|EDX54084.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249800|gb|EDY74580.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541774|gb|ACI60003.1| Sua5/YciO/YrdC/YwlC family protein [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225379920|gb|EEH02282.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 186

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 35/213 (16%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  IT+ NA+  A   L A   + IPT+T+ GL   +++      +YEIK+R     +
Sbjct: 1   MKIYRITNLNAIYDA---LVANKCVLIPTDTIIGLLAKNQDV-----IYEIKRRDRNKKI 52

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +  V+D  ++     +         LFWPG +T++ + +S                +R+P
Sbjct: 53  VRFVADYKLL---GDLTVEQEQFLDLFWPGSVTVIKNGVS----------------YRMP 93

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              +  KLI+  G PL   SAN SG+  + N    +         LI      +IG+ ST
Sbjct: 94  NSPYILKLIQKLG-PLYCSSANISGEEPVKNHNEAI-FKFGANSKLIYVEAQQQIGVPST 151

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212
           IV++   + VR     G  IE +   I  EL+Y
Sbjct: 152 IVDIDKWEYVR----RGANIEMVDMFIK-ELKY 179


>gi|197263827|ref|ZP_03163901.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205354969|ref|YP_002228770.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858644|ref|YP_002245295.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197242082|gb|EDY24702.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205274750|emb|CAR39807.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710447|emb|CAR34805.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326630118|gb|EGE36461.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 190

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +   
Sbjct: 7   TGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFE 66

Query: 69  MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            +K +     L+    K     WPGP+T V    +TT      T    +   RV      
Sbjct: 67  QLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSG 144
             L   YG PL   SAN SG
Sbjct: 125 VALCNAYGKPLVSTSANLSG 144


>gi|313679703|ref|YP_004057442.1| translation factor sua5 [Oceanithermus profundus DSM 14977]
 gi|313152418|gb|ADR36269.1| translation factor SUA5 [Oceanithermus profundus DSM 14977]
          Length = 197

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 15/185 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK----HASVDPLS 80
           +A PT+T +GL   +  P A+ R+Y +K R    PL   V+D++  ++         P  
Sbjct: 18  LAWPTDTTWGLLARADRPEALARIYRVKGRDPAKPLQLLVADLAAARRLLDPGWDAAPFE 77

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             LA+ FWPG LTLV   +      P +  +      R+P     ++L+   G   A  S
Sbjct: 78  -RLARAFWPGALTLV---VPAGPEAPEACVHEGKVGLRLPADPELRRLLARAGGYAAATS 133

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
            N SG+  +   +  L  +   +    I  G +     ST+V++      RILR G +  
Sbjct: 134 LNPSGRPPVLRYRDALRYADWVD---RIHPGEAGGTEASTVVDLTVP---RILREGAVPA 187

Query: 200 ETLKR 204
             ++R
Sbjct: 188 ADVRR 192


>gi|295696805|ref|YP_003590043.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912]
 gi|295412407|gb|ADG06899.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912]
          Length = 221

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 6/151 (3%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +D   + KA E L  G    +P +TVYG    +     + R+Y IK+R    P + + ++
Sbjct: 14  SDEEGIAKAVEVLSVGGVAILPADTVYGFFASAVQREPVERVYRIKQREKRKPFVIYTNE 73

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT--ACFRVPCGFT 124
              V+    V+  +  L +L WP  L+L+   L   DI P    N +   A         
Sbjct: 74  -KKVRDIVEVNETAERLIELVWPKALSLI---LPKRDIIPDWFTNFQRTLAVMTAQNRII 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHIL 155
            ++I     P+   + N SG+  +   + ++
Sbjct: 130 SRVIAEVDEPIFGTTCNMSGEPELKKAEEVI 160


>gi|332295207|ref|YP_004437130.1| SUA5/yciO/yrdC domain protein [Thermodesulfobium narugense DSM
           14796]
 gi|332178310|gb|AEE13999.1| SUA5/yciO/yrdC domain protein [Thermodesulfobium narugense DSM
           14796]
          Length = 203

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 8/185 (4%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VD-PLSLH 82
           +PT+T++ L  D+R+     R++++K+R         V  ++ + + A+   VD  + L 
Sbjct: 21  VPTDTLFALTGDARSEEVASRIFDVKRRLPDKSFPVFVPSLNWLLEKANFKYVDLEIFLR 80

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
           L+ +FWPGPLT+V  +     +      +   A   V      K+ E    P+   SAN 
Sbjct: 81  LSSIFWPGPLTIVSRVFFDFKLSEKVVLDNFLALRVVSHPVINKIFEDINFPIIGTSANI 140

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+I+  +       ++ K I     G +    + ST+  V+ +  V +LR G ++   L
Sbjct: 141 SGKINPLSQDE-FDKTLLKGIDFFAQGELIYY-VPSTV--VKLDSNVEVLREGVIKKGVL 196

Query: 203 KRAIS 207
           ++ +S
Sbjct: 197 EKVLS 201


>gi|213626671|gb|AAI69844.1| LOC398207 protein [Xenopus laevis]
          Length = 912

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T ++++R+  E +  G    IPT+TVY L      P A+ + Y+ K++    P+   +S 
Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690

Query: 67  ISMV--KKHASVDPLSLHLAKLFWPGPLTLV------LDLLSTTDIHPLSTANLKTACFR 118
           +  +   KH    PL     +  WP  ++LV      L++L   +         ++   R
Sbjct: 691 LEQLASAKHL-FSPLLWDFMQKAWPSSISLVIPRGPWLEVLGAKESSKY-IGTPQSIAIR 748

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P C  T  LI+  G P+A+ SAN SG+   T+   +  + +  ++  ++  G S   + 
Sbjct: 749 IPDCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVNGVLCDGPSPENIA 806

Query: 178 STIVNVQCEK 187
           ST+V+  C K
Sbjct: 807 STVVD--CTK 814


>gi|16766691|ref|NP_462306.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167995177|ref|ZP_02576267.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|81521479|sp|Q8ZLN0|RIMN_SALTY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|16421958|gb|AAL22265.1| putative translation factor [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205327095|gb|EDZ13859.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248559|emb|CBG26397.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995611|gb|ACY90496.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159945|emb|CBW19464.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914425|dbj|BAJ38399.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226454|gb|EFX51504.1| YrdC subfamily, required for N6-threonylcarbamoyl adenosine t(6)A37
           modification in tRNA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323131760|gb|ADX19190.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990254|gb|AEF09237.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 190

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K +     L+    
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 82

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
           K     WPGP+T V    +TT      T    +   RV        L   YG PL   SA
Sbjct: 83  KAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 140

Query: 141 NRSGQISITNVKHI 154
           N SG      V+ +
Sbjct: 141 NLSGLPPCRTVEEV 154


>gi|170699294|ref|ZP_02890343.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria
           IOP40-10]
 gi|170135786|gb|EDT04065.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria
           IOP40-10]
          Length = 210

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  IAIPT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAADIVSKGGVIAIPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD       K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175


>gi|126664113|ref|ZP_01735106.1| translation factor [Flavobacteria bacterium BAL38]
 gi|126623827|gb|EAZ94522.1| translation factor [Flavobacteria bacterium BAL38]
          Length = 206

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 13/198 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLIC-HVSD 66
           A++K    L  G  +  PT+TVYGL  D  N  A+ +L +IK      A    +C  +S+
Sbjct: 16  AIKKVVSVLKDGGLVIYPTDTVYGLGCDITNSRALEKLAKIKGIKLEKANFSFVCSSLSN 75

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +S   K   +D  +  + K   PGP T +L      D+ P      KT   RVP      
Sbjct: 76  LSDYVKQ--IDTSTFKILKRALPGPYTFILP--GNNDL-PREFRKKKTVGIRVPANNIAL 130

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++E  G+P+   S     + I  +    ++      ++ L+IDGG     + STI+++ 
Sbjct: 131 QIVEMLGNPIVSTSIRDEDEVIEYSTDPELIFEKWQNKVDLVIDGGYGD-NVASTIIDLT 189

Query: 185 CEKKVRILRPGGLEIETL 202
             +   ++R G   ++ L
Sbjct: 190 GHEP-EVIREGKGSLDVL 206


>gi|45440104|ref|NP_991643.1| putative ribosome maturation factor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597951|ref|YP_072142.1| ribosome maturation factor [Yersinia pseudotuberculosis IP 32953]
 gi|108809218|ref|YP_653134.1| putative ribosome maturation factor [Yersinia pestis Antiqua]
 gi|108813983|ref|YP_649750.1| putative ribosome maturation factor [Yersinia pestis Nepal516]
 gi|145597487|ref|YP_001161562.1| putative ribosome maturation factor [Yersinia pestis Pestoides F]
 gi|150260706|ref|ZP_01917434.1| hypothetical protein YPE_3022 [Yersinia pestis CA88-4125]
 gi|153948235|ref|YP_001402826.1| ribosome maturation factor [Yersinia pseudotuberculosis IP 31758]
 gi|162421283|ref|YP_001605212.1| putative ribosome maturation factor [Yersinia pestis Angola]
 gi|165927892|ref|ZP_02223724.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936405|ref|ZP_02224973.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010412|ref|ZP_02231310.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213341|ref|ZP_02239376.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399680|ref|ZP_02305204.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418979|ref|ZP_02310732.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425696|ref|ZP_02317449.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468250|ref|ZP_02332954.1| putative ribosome maturation factor [Yersinia pestis FV-1]
 gi|170022581|ref|YP_001719086.1| putative ribosome maturation factor [Yersinia pseudotuberculosis
           YPIII]
 gi|186897147|ref|YP_001874259.1| putative ribosome maturation factor [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927452|ref|YP_002345327.1| putative ribosome maturation factor [Yersinia pestis CO92]
 gi|229836272|ref|ZP_04456439.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Pestoides A]
 gi|229840105|ref|ZP_04460264.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842186|ref|ZP_04462341.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904514|ref|ZP_04519625.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Nepal516]
 gi|270488268|ref|ZP_06205342.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27]
 gi|294502320|ref|YP_003566382.1| hypothetical protein YPZ3_0210 [Yersinia pestis Z176003]
 gi|81638257|sp|Q664V8|RIMN_YERPS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123245526|sp|Q1C2Y3|RIMN_YERPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123372822|sp|Q1CCY0|RIMN_YERPN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123777794|sp|Q74XX5|RIMN_YERPE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288236|sp|A7FNJ8|RIMN_YERP3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288237|sp|B2K500|RIMN_YERPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288238|sp|A9R933|RIMN_YERPG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288239|sp|A4TH27|RIMN_YERPP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288240|sp|B1JJI2|RIMN_YERPY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|45434959|gb|AAS60520.1| Putative translation factor (SUA5) [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591233|emb|CAH22899.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777631|gb|ABG20150.1| hypothetical protein YPN_3823 [Yersinia pestis Nepal516]
 gi|108781131|gb|ABG15189.1| hypothetical protein YPA_3227 [Yersinia pestis Antiqua]
 gi|115346063|emb|CAL18929.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209183|gb|ABP38590.1| hypothetical protein YPDSF_0168 [Yersinia pestis Pestoides F]
 gi|149290114|gb|EDM40191.1| hypothetical protein YPE_3022 [Yersinia pestis CA88-4125]
 gi|152959730|gb|ABS47191.1| ribosomal modification protein RimN [Yersinia pseudotuberculosis IP
           31758]
 gi|162354098|gb|ABX88046.1| ribosomal modification protein RimN [Yersinia pestis Angola]
 gi|165915521|gb|EDR34130.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920168|gb|EDR37469.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990502|gb|EDR42803.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205639|gb|EDR50119.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962973|gb|EDR58994.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052184|gb|EDR63592.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055386|gb|EDR65180.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749115|gb|ACA66633.1| SUA5/yciO/yrdC domain [Yersinia pseudotuberculosis YPIII]
 gi|186700173|gb|ACC90802.1| SUA5/yciO/yrdC domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|229678632|gb|EEO74737.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Nepal516]
 gi|229690496|gb|EEO82550.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696471|gb|EEO86518.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706340|gb|EEO92347.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Pestoides A]
 gi|262360400|gb|ACY57121.1| hypothetical protein YPD4_0212 [Yersinia pestis D106004]
 gi|262364350|gb|ACY60907.1| hypothetical protein YPD8_0217 [Yersinia pestis D182038]
 gi|270336772|gb|EFA47549.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27]
 gi|294352779|gb|ADE63120.1| hypothetical protein YPZ3_0210 [Yersinia pestis Z176003]
 gi|320013379|gb|ADV96950.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 190

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++ + ++ + +   L+ +  
Sbjct: 23  IAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSMLNEIQR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACF-----RVPCG-FTKKLIETYGHPL 135
             LF  WPGP+T V+          + T    T CF     RV      ++L   YG PL
Sbjct: 83  ETLFSTWPGPITWVIPAR-------VETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPL 135

Query: 136 AIPSANRSG 144
              SAN SG
Sbjct: 136 VSTSANLSG 144


>gi|312172531|emb|CBX80787.1| Uncharacterized protein yciO [Erwinia amylovora ATCC BAA-2158]
          Length = 207

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+ G  I  PT++ Y L     + +A+ R+  I++    +       D+S + 
Sbjct: 18  IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLSELS 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       L+E
Sbjct: 78  TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +   I K + LII GG   +G + T V    E   
Sbjct: 136 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGF--LGQQPTTVIDLTENTP 193

Query: 190 RILRPGGLEIETLK 203
            ++R G  +++  +
Sbjct: 194 EVVREGVGDVQPFR 207


>gi|22127897|ref|NP_671320.1| putative ribosome maturation factor [Yersinia pestis KIM 10]
 gi|21961034|gb|AAM87571.1|AE014004_9 hypothetical protein y4027 [Yersinia pestis KIM 10]
          Length = 194

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++ + ++ + +   L+ +  
Sbjct: 27  IAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQLEPYINDSMLNEIQR 86

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACF-----RVPCG-FTKKLIETYGHPL 135
             LF  WPGP+T V+          + T    T CF     RV      ++L   YG PL
Sbjct: 87  ETLFSTWPGPITWVIPAR-------VETPQWLTGCFDSLAVRVSNHPLVQQLCAEYGKPL 139

Query: 136 AIPSANRSG 144
              SAN SG
Sbjct: 140 VSTSANLSG 148


>gi|187479076|ref|YP_787101.1| hypothetical protein BAV2596 [Bordetella avium 197N]
 gi|115423663|emb|CAJ50208.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 208

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 12/189 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           L++A +++  G  IA+PT++ Y +A    D      +RRL  + +R  +  L+C   D++
Sbjct: 17  LKQAAQWIGDGGLIAVPTDSSYAVAARLDDKDAADRLRRLRGLDERHHLT-LLCR--DLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126
            + + A VD     L KL  PGP T +L+  +T ++   +S  + KT   RVP       
Sbjct: 74  EIGQFAKVDNRQYRLLKLATPGPWTFILE--ATREVPRRVSHPSRKTIGIRVPDHAVALA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   +    G+    N    +S     ++  +ID G       +T++++  +
Sbjct: 132 LLEQVGAPLLSTTLIPKGEDDALNDAEAISLRFAHDLAAVIDAGACPQH-PTTVIDLTGD 190

Query: 187 KKVRILRPG 195
           + V +LR G
Sbjct: 191 EPV-VLRRG 198


>gi|149374416|ref|ZP_01892190.1| hypothetical protein MDG893_10226 [Marinobacter algicola DG893]
 gi|149361119|gb|EDM49569.1| hypothetical protein MDG893_10226 [Marinobacter algicola DG893]
          Length = 207

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  I  PT++ Y +     +  A  R+  I++    +       D+S + 
Sbjct: 17  INQAVDILRKGGVIVYPTDSAYAIGCHLGDKQAADRIKRIRRLDDKHNFTLMCRDLSDIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
             A VD     L K F PG  T +LD  S      +HP      KT   RVP     + L
Sbjct: 77  VFAKVDNTQYRLLKNFTPGAYTFILDATSEVPRRLLHP----KRKTIGMRVPDNAIVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           +   G P+   +    G        + +  ++  E+ LIIDGG    GLE+T V
Sbjct: 133 LAELGEPIMSSTLILPGDEDPMTDPYDIRETLEHELDLIIDGGFC--GLEATTV 184


>gi|308047752|ref|YP_003911318.1| translation factor SUA5 [Ferrimonas balearica DSM 9799]
 gi|307629942|gb|ADN74244.1| translation factor SUA5 [Ferrimonas balearica DSM 9799]
          Length = 187

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSLH 82
           +A PTE V+GL  D  N  A+ RL +IK+RP    LI   ++   +    + S  P +  
Sbjct: 20  VAYPTEAVFGLGCDPSNEEAVSRLLDIKQRPVEKGLILIAANYGQLLPFVNDSALPDARR 79

Query: 83  LAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
            A +  WPGP T V+   +   +    T    T   RV        L   +G P+   SA
Sbjct: 80  EAVMARWPGPTTWVMP--AQPSVPGWVTGQFDTLAVRVTDHAIAADLCRAFGGPVVSTSA 137

Query: 141 NRSGQISITNVKHILSS 157
           N +GQ    +   +L++
Sbjct: 138 NLTGQPPCRSADEVLAA 154


>gi|307566301|ref|ZP_07628743.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella amnii CRIS 21A-A]
 gi|307344995|gb|EFN90390.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella amnii CRIS 21A-A]
          Length = 189

 Score = 52.4 bits (124), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 5/147 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KA E +  G  I  PT+TV+G+  D+ N  A+ ++Y++K+R     LIC V     
Sbjct: 5   DDIKKAIEVMRQGGIILYPTDTVWGIGCDATNADAVAKVYKLKRRDDSKALICLVDSEDR 64

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++++  +V  ++  L +     P TL+LD  +  ++     A   +   R+    F+K+L
Sbjct: 65  LQRYVRNVPQVAWQLLEAV-TKPTTLILD--NAVNLASNLIAEDGSIGMRITNEPFSKEL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154
              +   +   SAN SG+ +  N + I
Sbjct: 122 CYRFQKAIVSTSANISGEPAAQNYRDI 148


>gi|16762880|ref|NP_458497.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144367|ref|NP_807709.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213023921|ref|ZP_03338368.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213161454|ref|ZP_03347164.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417232|ref|ZP_03350376.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428279|ref|ZP_03361029.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582984|ref|ZP_03364810.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213622290|ref|ZP_03375073.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213650875|ref|ZP_03380928.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289824188|ref|ZP_06543783.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|81593190|sp|Q8Z1W6|RIMN_SALTI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|25305392|pir||AF1010 conserved hypothetical protein yrdC [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505187|emb|CAD09183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140005|gb|AAO71569.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 190

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K +     L+    
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 82

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
           K     WPGP+T V    +TT      T    +   RV        L   YG PL   SA
Sbjct: 83  KAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 140

Query: 141 NRSGQISITNVKHILSSSICKEIPLI 166
           N SG      V+ +  +    + P++
Sbjct: 141 NLSGLPPCRTVEEV-RAQFGDDFPVV 165


>gi|300716950|ref|YP_003741753.1| hypothetical protein [Erwinia billingiae Eb661]
 gi|299062786|emb|CAX59906.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 206

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+ G  I  PT++ Y L     + +A+ R+ +I+K    +       D+S + 
Sbjct: 17  IKQAVELLNKGSVIVYPTDSGYALGCKLEDKSAMERICKIRKLDGNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L+E
Sbjct: 77  TYAHVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +  SI K + LII GG   +G   T V    E   
Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEAIQDSIGKLVDLIIHGGY--LGQHPTTVIDLTENTP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVVREG 198


>gi|168239765|ref|ZP_02664823.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734742|ref|YP_002116346.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204931408|ref|ZP_03222077.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194710244|gb|ACF89465.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197287578|gb|EDY26970.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204319836|gb|EDZ05046.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 190

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K +     L+    
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 82

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           K     WPGP+T V    +TT      T    +   RV        L   YG PL   SA
Sbjct: 83  KAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 140

Query: 141 NRSG 144
           N SG
Sbjct: 141 NLSG 144


>gi|56415322|ref|YP_152397.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364252|ref|YP_002143889.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81360772|sp|Q5PIS8|RIMN_SALPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|56129579|gb|AAV79085.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095729|emb|CAR61299.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 190

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K +     L+    
Sbjct: 23  IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 82

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
           K     WPGP+T V    +TT      T    +   RV        L   YG PL   SA
Sbjct: 83  KAVFDCWPGPVTFVFPAPATTPRW--LTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 140

Query: 141 NRSGQISITNVKHI 154
           N SG      V+ +
Sbjct: 141 NLSGLPPCRTVEEV 154


>gi|257126756|ref|YP_003164870.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia buccalis C-1013-b]
 gi|257050695|gb|ACV39879.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia buccalis C-1013-b]
          Length = 219

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 21/205 (10%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV-----KKH 73
           L  G     PT+TVYG+    +    + ++Y+IKKR     +I  +S+  ++     +  
Sbjct: 21  LKNGGVAVFPTDTVYGIGTLPK-KEFVEKIYKIKKRDFSKKIIALISNQKILSSLINETS 79

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
            ++D +S  L K +WPG LT++    +  +       ++ T   R+P      ++IE  G
Sbjct: 80  ENMDKISNILNK-YWPGELTVIFR--ANQNFTKKFDKDMHTIGIRIPKNEIALEIIENSG 136

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKI--------GLESTIVNV 183
             +   SAN SG+ S+T  ++ L+ ++ K + + I D  I           G  STI+  
Sbjct: 137 GVVLTTSANISGENSVTKFEN-LNENLLKNVDVAISDESIENFEKINNKLTGKPSTIIKY 195

Query: 184 QCEKKVRILRPGGLEIETLKRAISV 208
           +  K + +LR G +  E + +   +
Sbjct: 196 ENGKLI-LLREGNISFEEILKEFQI 219


>gi|213865417|ref|ZP_03387536.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 182

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K +     L+    
Sbjct: 15  IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQR 74

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
           K     WPGP+T V    +TT      T    +   RV        L   YG PL   SA
Sbjct: 75  KAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSA 132

Query: 141 NRSGQISITNVKHI 154
           N SG      V+ +
Sbjct: 133 NLSGLPPCRTVEEV 146


>gi|71892003|ref|YP_277733.1| RNA-binding protein [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|123641086|sp|Q493I0|RIMN_BLOPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|71796109|gb|AAZ40860.1| putative RNA-binding protein with unique protein fold, with
           YrdC/RibB domain [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 194

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I  PTE+V+GL  D  N  AI  L +IK R     LI   ++ + + K+     
Sbjct: 22  LSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWKKGLILVAANYTQLLKYIDDSC 81

Query: 79  LS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT--KKLIETYGH 133
           L+    +++F  WPGP+T V    +  +     T    +   RV   F   ++L   +G 
Sbjct: 82  LNETQRSRVFSTWPGPMTWVFP--AQANRSYWLTGQFSSVAVRV-SHFEPIQRLCLAFGK 138

Query: 134 PLAIPSANRSGQISITNVKHI 154
           PL   SAN SGQ+    ++ +
Sbjct: 139 PLVSTSANLSGQLPARTIEEV 159


>gi|320008547|gb|ADW03397.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 215

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 15/204 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+ +   +  L + K R    P    +   +
Sbjct: 14  TTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEGVADLLDAKGRGRNMPTPVLIGSPN 73

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            +  H  V   S     L   FWPG LTLV     +       T    T   R+P     
Sbjct: 74  TL--HGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDTRG--TVAVRMPLHPVA 129

Query: 126 KLIETYGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + T   P+A+ SAN +G  S       + +L  S+     + +DGG +   + S+IV+
Sbjct: 130 IELLTEVGPMAVSSANLTGHPSPETCDAAQEMLGDSVS----VYLDGGSTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     + +LR G + +E L++ +
Sbjct: 186 VTGRIPL-LLRAGAIPVEELRKVV 208


>gi|288803651|ref|ZP_06409081.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica D18]
 gi|302345636|ref|YP_003813989.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica ATCC
           25845]
 gi|288333891|gb|EFC72336.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica D18]
 gi|302149344|gb|ADK95606.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica ATCC
           25845]
          Length = 189

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 5/148 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++KA E +  G  I  PT+TV+G+  D+ N  A+ ++Y +K+R     LIC V   +
Sbjct: 4   EDDIKKAIEVMRKGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVDSDN 63

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++++  +V  ++  L +     P TL+LD     ++ P   A   +   R+    F+ +
Sbjct: 64  RLQRYVRNVPDVAWQLIEAV-EKPTTLILD--GAVNLAPNLIAEDGSIGIRITKEPFSHE 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI 154
           L   +   +   SAN SG+ +  N + I
Sbjct: 121 LCYRFQKAIVSTSANVSGEPAAQNYRDI 148


>gi|152979360|ref|YP_001344989.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus succinogenes
           130Z]
 gi|150841083|gb|ABR75054.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus succinogenes
           130Z]
          Length = 207

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 9/196 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A E L  G  I  PT++ Y L     +  A+ R+  I+  P  +      SD+S
Sbjct: 14  SRLINQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRHLPQGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126
            +  +A+V  ++  L K   PG  T +L   +T ++   L T+  KT   RVP       
Sbjct: 74  ELSHYATVSNVAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNQIALD 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLE-STIVNVQ 184
           L++T G P+   S    G+  IT      +   + +++ LII GG   +G E +T+V++ 
Sbjct: 132 LLKTLGEPILSCSLMLPGEDHITQSDPEEIRDRLERQVELIIHGGY--LGQEPTTVVDLT 189

Query: 185 CEKKVRILRPGGLEIE 200
            E  V ILR G   +E
Sbjct: 190 DETPV-ILREGSGSVE 204


>gi|237714230|ref|ZP_04544711.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408394|ref|ZP_06084941.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647539|ref|ZP_06725118.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a]
 gi|294808576|ref|ZP_06767320.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|298482087|ref|ZP_07000275.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22]
 gi|229445722|gb|EEO51513.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353946|gb|EEZ03039.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637107|gb|EFF55546.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a]
 gi|294444219|gb|EFG12942.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|298271644|gb|EFI13217.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22]
          Length = 204

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P    ++++  
Sbjct: 75  SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNISREIAR 131

Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185
               P+    +P         +T+   ++       + L+IDGGI   G+E + V V+C 
Sbjct: 132 LLDAPIMTTTLPYEEHEDLEYMTD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187

Query: 186 EKKVRILRPG 195
           + ++ I+R G
Sbjct: 188 DNELEIVRQG 197


>gi|327290899|ref|XP_003230159.1| PREDICTED: hypothetical protein LOC100563185 [Anolis carolinensis]
          Length = 874

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 17/189 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  E +  G    IPT+TVY LA     P A+ + Y  K++    P+   +S + 
Sbjct: 614 ASSVKQVAEIMKQGGACGIPTDTVYVLAAACNRPDAVEKAYNTKRQAEDRPMSLWISSLK 673

Query: 69  M---VKKHASVDPLSLHLAKLFWPGPLTLV------LDLLSTTDIHPLSTANLKTACFRV 119
               VK+  S  P+     +  W  P++LV      LD L   D         ++   R+
Sbjct: 674 QLEPVKRLFS--PILWDFMEAAWASPISLVIPRGEWLDYLGLKD-SAKYVGTPQSIAIRI 730

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P C  T  LI+  G P+ + SAN +G+   T+   +  + +  ++  ++  G S   + S
Sbjct: 731 PDCSVTTHLIDLVG-PITVTSANPTGEADTTHHNQVF-AKLGNKVDAVLCAGPSPENIAS 788

Query: 179 TIVNVQCEK 187
           T+V+  C K
Sbjct: 789 TVVD--CTK 795


>gi|326796235|ref|YP_004314055.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas mediterranea MMB-1]
 gi|326546999|gb|ADZ92219.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas mediterranea MMB-1]
          Length = 206

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 11/180 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  IA PT++ Y L     +  A+ R+  I++    +     V D+S + 
Sbjct: 17  IKQAAQIVREGGVIAYPTDSGYSLGCHIGDKKALERIRTIRRLDDKHNFTLVVRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
            +A  D +   L K   PGP T + +  S      +HP      KT   R+P       L
Sbjct: 77  TYARFDNVMYRLLKHNTPGPYTFIFNATSEVPRRLMHP----KRKTIGIRIPQSNIVSAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186
           ++  G PL   S    G+       + +  ++  ++ L+IDGG    G+E +T+V++  E
Sbjct: 133 LDELGEPLMSASLILPGESDPMMDPYDIRGTLEHQLDLVIDGGYC--GMEPTTVVHMDSE 190


>gi|315654803|ref|ZP_07907708.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333]
 gi|315490764|gb|EFU80384.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333]
          Length = 215

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 20/195 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82
           + +PT+TVYG+A     P A+ RL   K R    P    VS  + ++   + +P +    
Sbjct: 29  LVMPTDTVYGIASVPFAPVAVSRLQNAKGRGEDFPPPVLVSGPAALEDLMAPEPQASASQ 88

Query: 83  ------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYG 132
                 LA+ FWPG LT+++        +P    +L     T   R P       I  Y 
Sbjct: 89  RRAARVLAERFWPGALTIIV------TANPALGWDLGQTHGTIALRQPDHPRALEILRYT 142

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PLA+ SAN   +   T++    ++   + + + +D G+S  G  STIV++  +   R+L
Sbjct: 143 GPLAVTSANLHTRPPATDIAAA-TNYFGERVSVYVDAGVSPSGHPSTIVSL-TQDSPRLL 200

Query: 193 RPGGLEIETLKRAIS 207
           R G + +  +  A++
Sbjct: 201 RQGDIPLSDILAALA 215


>gi|303237066|ref|ZP_07323636.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella disiens FB035-09AN]
 gi|302482453|gb|EFL45478.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella disiens FB035-09AN]
          Length = 189

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++KA E +  G  I  PT+TV+G+  D+ N  A+ ++YEIK R     L+C V 
Sbjct: 1   MTQQEDIKKAVEVMRKGGVILYPTDTVWGIGCDATNAEAVAKVYEIKHRDDSKALVCLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               ++++  +V  ++  L +     P T++LD  +  ++     A   +   R+    F
Sbjct: 61  SQDRLQRYVRNVPDVAWQLMEAV-VKPTTIILD--NAVNLASNLVAEDGSIGMRITNEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +K+L   +   +   SAN SG+ +  N   I
Sbjct: 118 SKELCFRFQKAIVSTSANISGEPAAQNYPDI 148


>gi|153875764|ref|ZP_02003416.1| translation factor [Beggiatoa sp. PS]
 gi|152067772|gb|EDN66584.1| translation factor [Beggiatoa sp. PS]
          Length = 208

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I  PT++ Y L     +  A+ R+  I++    +         S + 
Sbjct: 17  ISQTVDIIKKGGVIVYPTDSSYALGCYMGDKAAMERISFIRQTDKNHNFTLVCRAFSEIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A+V+  +  L K   PGP T +L   +T ++   L     KT   RVP     + ++E
Sbjct: 77  TYANVNNTAFRLMKSLTPGPYTFILK--ATNEVPRRLQNPKRKTIGVRVPDHSIVQAIVE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+ +       +   + K++ LIIDGG    G E+T +     +  
Sbjct: 135 MLGEPLMSSTLIMPGKETPETEPDTIKELLQKQVDLIIDGG--NCGFEATTIVDMMTESP 192

Query: 190 RILRPGGLEIETL 202
           +ILR G   I+ L
Sbjct: 193 QILRQGKGPIDVL 205


>gi|332300598|ref|YP_004442519.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177661|gb|AEE13351.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 195

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 10/189 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68
           +A R+A + L  G  I  PT+T++GL  D+ N  A+ RL  +K RP   P++  V SD+ 
Sbjct: 12  SAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDVR 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +     +V  ++  L  +    PLT++       ++ P   A+  +   R+      +++
Sbjct: 72  IQSYVRTVPSMAFQLIDVAV-RPLTIIYP--EGRNVAPQLLADDGSIGIRIASDTLCQEI 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
                 PL   SAN +G  S  N   I   L   +   +PL  D  I   G+ S I+ + 
Sbjct: 129 CRMLRRPLVSTSANLAGTSSPHNYSEIDPALIKMVDYVVPLRQDEHID--GMPSDIIKLG 186

Query: 185 CEKKVRILR 193
              +VR++R
Sbjct: 187 INNEVRVIR 195


>gi|238021424|ref|ZP_04601850.1| hypothetical protein GCWU000324_01324 [Kingella oralis ATCC 51147]
 gi|237868404|gb|EEP69410.1| hypothetical protein GCWU000324_01324 [Kingella oralis ATCC 51147]
          Length = 207

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 12/193 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++++    +ALR+    +  G  IA PTE+ YG+  + R+  A+R +  +KKRP     I
Sbjct: 23  RLLTHHAPSALRR---HIQRGGLIAYPTESCYGIGANPRHAHALRAILRLKKRPQHKGFI 79

Query: 62  CHVSDISMVKKHASVDPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA-CFR 118
              ++++ ++      P ++  HL +  WP P++ VL   +   + PL   N +     R
Sbjct: 80  TIGNNLAQLEPLLQRQPENVRQHL-RATWPAPISFVLP--AHPRVLPLLRGNQRNRLAVR 136

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     ++L    G PL   S N+SG+ +  + + +    +      I+ G + K    
Sbjct: 137 VPNHAVARELCRIAGTPLVSTSCNQSGKRACKSEREV--RRLFGRKLWIVGGRVGKRKQP 194

Query: 178 STIVNVQCEKKVR 190
           S IV+    +++R
Sbjct: 195 SEIVDWAENRRLR 207


>gi|148235871|ref|NP_001082069.1| putative transmembrane protein TA-2 [Xenopus laevis]
 gi|12007284|gb|AAG45109.1|AF310008_1 putative transmembrane protein TA-2 [Xenopus laevis]
          Length = 912

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 15/190 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T ++++R+  E +  G    IPT+TVY L      P A+ + Y+ K++    P+   +S 
Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690

Query: 67  ISMV--KKHASVDPLSLHLAKLFWPGPLTLV------LDLLSTTDIHPLSTANLKTACFR 118
           +  +   KH    PL        WP  ++LV      L++L   +         ++   R
Sbjct: 691 LEQLASAKHL-FSPLLWDFMHKAWPSSISLVIPRGPWLEVLGAKESSKY-IGTPQSIAIR 748

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P C  T  LI+  G P+A+ SAN SG+   T+   +  + +  ++  ++  G S   + 
Sbjct: 749 IPDCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVDGVLCDGPSPENIA 806

Query: 178 STIVNVQCEK 187
           ST+V+  C K
Sbjct: 807 STVVD--CTK 814


>gi|254786472|ref|YP_003073901.1| Sua5/YciO/YrdC/YwlC family protein [Teredinibacter turnerae T7901]
 gi|237685207|gb|ACR12471.1| Sua5/YciO/YrdC/YwlC family protein [Teredinibacter turnerae T7901]
          Length = 224

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 10/208 (4%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  SI   N     + +A + L  G  I  PT++ Y L     +  A+ R+  +++    
Sbjct: 21  QFFSIHPENPQARLISQAVDILRRGGLIVYPTDSAYALGCHIGDKLALDRIRALRQLDKH 80

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTAC 116
           +       D+S +  +A VD  +  + K   PGP T +L+  +T+++   L     KT  
Sbjct: 81  HNFTLMCRDLSELANYARVDNTAYRIIKSHTPGPFTFILN--ATSEVPRRLQHPKRKTLG 138

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP       L+E  G PL   S    G        + +  ++  +  L+IDGG    G
Sbjct: 139 MRVPDNAIALALLEELGEPLMSSSLILPGDTLPLTDPYDIRDTLEHQCELVIDGGFC--G 196

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203
           LE T V      + +++R G  +I   +
Sbjct: 197 LEPTSVIDLTGDEPQVMREGCGDISDFR 224


>gi|296102093|ref|YP_003612239.1| hypothetical protein ECL_01732 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056552|gb|ADF61290.1| hypothetical protein ECL_01732 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 206

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKAAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+   S    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 TLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGY--LGQQPTTVVDLTEDAP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|152969813|ref|YP_001334922.1| hypothetical protein KPN_01259 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238894321|ref|YP_002919055.1| hypothetical protein KP1_2300 [Klebsiella pneumoniae NTUH-K2044]
 gi|262043011|ref|ZP_06016154.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330002627|ref|ZP_08304382.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3]
 gi|150954662|gb|ABR76692.1| hypothetical protein KPN_01259 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546637|dbj|BAH62988.1| hypothetical protein KP1_2300 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039613|gb|EEW40741.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537247|gb|EGF63508.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3]
          Length = 206

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYAFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+   S    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGF--LGQQPTTVIDLTEDTP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|145627820|ref|ZP_01783621.1| putative translation factor, SUA5 [Haemophilus influenzae 22.1-21]
 gi|144979595|gb|EDJ89254.1| putative translation factor, SUA5 [Haemophilus influenzae 22.1-21]
          Length = 207

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A+V+ ++  L K   PG  T +  L +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYATVNNIAYRLIKNNTPGRYTFI--LTATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P+   + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|218438456|ref|YP_002376785.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7424]
 gi|218171184|gb|ACK69917.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7424]
          Length = 217

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 12/196 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ +  + L +G  +  PT+TVY +  D    +A+ R+ ++K+     PL    S +S +
Sbjct: 16  SIEQISDALKSGAIMLYPTDTVYAIGCDMNTKSAVERVRQLKQLSNDKPLTFLCSSLSNI 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKL 127
            ++A V   +  + K   PGP T    LL  T + P  + +   KT   RVP     + L
Sbjct: 76  SEYALVTDQAYRIMKRLIPGPYTF---LLPATKLVPKLVMSPKRKTTGIRVPDNEVCQAL 132

Query: 128 IETYGHPLAIPSA---NRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLE-STIVN 182
           + +  +P+   SA   +  G      V K  L  ++ K + +IID G+   G E STI++
Sbjct: 133 LTSLDNPIISASAHLPDEEGDFPTMGVEKARLFDALDKLVDIIIDSGVEP-GFEVSTIID 191

Query: 183 VQCEKKVRILRPGGLE 198
           +   + + + +  G E
Sbjct: 192 LTDNEPIIVRQGLGWE 207


>gi|206575970|ref|YP_002239002.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342]
 gi|288935910|ref|YP_003439969.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella variicola At-22]
 gi|290512944|ref|ZP_06552308.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. 1_1_55]
 gi|206565028|gb|ACI06804.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342]
 gi|288890619|gb|ADC58937.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella variicola At-22]
 gi|289774557|gb|EFD82561.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. 1_1_55]
          Length = 206

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYAFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+   S    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGF--LGQQPTTVIDLTEDTP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|255691112|ref|ZP_05414787.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM
           17565]
 gi|260623465|gb|EEX46336.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM
           17565]
          Length = 204

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF----TKK 126
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P         +
Sbjct: 75  SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNHIIREIAR 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185
           L++       +P         IT+   ++       + L+IDGGI   G+E + V V+C 
Sbjct: 132 LLDAPIMTTTLPHEENEDLEYITD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187

Query: 186 EKKVRILRPG 195
           E +  I+R G
Sbjct: 188 ENEPEIVRQG 197


>gi|154489839|ref|ZP_02030100.1| hypothetical protein PARMER_00068 [Parabacteroides merdae ATCC
           43184]
 gi|218258263|ref|ZP_03474665.1| hypothetical protein PRABACTJOHN_00320 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089281|gb|EDN88325.1| hypothetical protein PARMER_00068 [Parabacteroides merdae ATCC
           43184]
 gi|218225606|gb|EEC98256.1| hypothetical protein PRABACTJOHN_00320 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 21/189 (11%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVSDISMVKKH 73
           D GL I  PT+TVY +  D+ N  A+ ++ ++K    +NP      +IC+  D+S + ++
Sbjct: 24  DGGLVIY-PTDTVYAIGCDALNVRAVEKICQLK---GVNPQKSNLSIICY--DLSNLSEY 77

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           A V   +  L K   PG  T +   L T+   P    N K    RVP     + L+   G
Sbjct: 78  AKVSNAAFKLMKKNLPGAFTFI---LPTSSELPKIYKNRKEVGIRVPDNNIIRTLVRELG 134

Query: 133 HPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           +P+   S +   + I  +    ++       + ++IDGG    G E ST++N   +    
Sbjct: 135 NPILTMSLHDKDEIIEYSTDPELIEEKYENLVDIVIDGGYG--GTEASTVINCTTD-DFE 191

Query: 191 ILRPGGLEI 199
           I+R G  E+
Sbjct: 192 IIRQGKGEL 200


>gi|254507292|ref|ZP_05119428.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 16]
 gi|219549752|gb|EED26741.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 16]
          Length = 111

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
          +   +A   L+ G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2  DNFDRALNALNDGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61

Query: 70 VKKHASVDPLS---LHLAKLFWPGPLTLVL 96
          +  +     L+   L      WPGP+T ++
Sbjct: 62 LLPYIDESQLTAQQLEQVHQTWPGPVTWIM 91


>gi|255612074|ref|XP_002539379.1| Protein yrdC, putative [Ricinus communis]
 gi|223506727|gb|EEF23004.1| Protein yrdC, putative [Ricinus communis]
          Length = 188

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + KA + +  G  I  PT+T++G+  D+ N  AI++++++K+R     +I  +   + 
Sbjct: 4   DEVEKALKVIQDGGIILYPTDTIWGVGCDATNTEAIKKIFKLKQRDEAKSMIILLDTENK 63

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
           ++ +    P   +    +   PLTLV+      +I P   A   +   RV    F ++LI
Sbjct: 64  LESYVKEVPAVAYDLIEYAENPLTLVMP--GAKNISPALIAADGSVGIRVSSHQFCQQLI 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---------ST 179
           +    P+   SAN SG  S  N      S I +E   IIDG    + L+         ST
Sbjct: 122 QRLRKPIVSTSANISGSPSPQNF-----SEIAQE---IIDGVDYVVDLDQHDLSKKKPST 173

Query: 180 IVNVQCEKKVRILR 193
           I+ ++ + +   +R
Sbjct: 174 IMRIEPDGRFEFIR 187


>gi|167626597|ref|YP_001677097.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596598|gb|ABZ86596.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 204

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 6/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    +A+PT++ Y LA   ++  AI ++ +I++    +       D+S + 
Sbjct: 17  LKEIANVLDNDGVLAVPTDSGYALACRMKSKKAIDKIIKIRELDGKHNFTLSCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++A VD  +  + K + PGP T +L+  +T  +   L T +  T   RV   +  + I  
Sbjct: 77  EYAKVDNSAYRILKRYTPGPFTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYALQAISA 134

Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL I S    GQ  +     ++   +   I ++I+      G EST V    E   
Sbjct: 135 EIGEPLVIGSFILPGQDHVVTDCSVIDDEVMNYIDVVIES--DYCGYESTTVVEMLELPY 192

Query: 190 RILRPGGLEIE 200
           +ILR G  EI+
Sbjct: 193 QILRQGAGEID 203


>gi|327405855|ref|YP_004346693.1| Sua5/YciO/YrdC/YwlC family protein [Fluviicola taffensis DSM 16823]
 gi|327321363|gb|AEA45855.1| Sua5/YciO/YrdC/YwlC family protein [Fluviicola taffensis DSM 16823]
          Length = 185

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 22/179 (12%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  I  PT+T++G+  D+ N  A +R+ EIK+RP     I  V    M++K+   
Sbjct: 9   EALKNGKTILYPTDTIWGIGCDATNEQACQRILEIKQRPKDKSFILLVDSFQMIEKYIPE 68

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-----LIETY 131
            P   +        PLT++    +   + P   A   +   R+    TK      LI + 
Sbjct: 69  FPAVCYDLADLADKPLTIIYP--NAQGLAPSVLAEDGSVGIRI----TKDPICLALIRSI 122

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID----------GGISKIGLESTI 180
             PL   SAN SG+   TN   I +S+I +++  I++            I KIGL+S+I
Sbjct: 123 RLPLVSTSANISGKPFPTNFSDI-NSAIKQQVEAILELKTNEQLSTPSQIIKIGLDSSI 180


>gi|167948397|ref|ZP_02535471.1| translation factor [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 163

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTE+V+GL  D  NP A+ RL  +K+RP    LI   SD + ++      P S  L 
Sbjct: 8   LAYPTESVFGLGCDPLNPQAVFRLLRLKQRPVSKGLILIASDFNQLQPFIDQLP-SQQLE 66

Query: 85  KLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
            +   WPGP T VL    T     L   +   A           L    G PL   SANR
Sbjct: 67  PVIQSWPGPHTWVLPAAPTLPFW-LRGDHSGIAVRVTNHPLAAALCRASGRPLVSTSANR 125

Query: 143 SGQISITNVKHI 154
           S      N   +
Sbjct: 126 SNHPPARNALQV 137


>gi|315657274|ref|ZP_07910156.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491746|gb|EFU81355.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 215

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82
           + +PT+TVYG+A     P A+ RL   K R    P    VS  + ++   + +P +    
Sbjct: 29  LVMPTDTVYGIASVPFAPVAVSRLQNAKGRGEDFPPPVLVSGPAALEDLMAPEPQASASQ 88

Query: 83  ------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYG 132
                 LA+ FWPG LT+++        +P    +L     T   R P       I  Y 
Sbjct: 89  RRAARLLAERFWPGALTIIV------TANPALGWDLGQTHGTIALRQPDHPRALEILRYT 142

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PLA+ SAN   +   T++    ++   + + + +D G+S  G  STIV++  +   R+L
Sbjct: 143 GPLAVTSANLHTRPPATDIAAA-TNYFGERVSVYVDAGVSPSGHPSTIVSL-TQDSPRLL 200

Query: 193 RPGGLEIETLKRAI 206
           R G + +  +  A+
Sbjct: 201 RQGDIPLSDILAAL 214


>gi|94676536|ref|YP_588859.1| hypothetical protein BCI_0417 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|212277667|sp|Q1LT55|RIMN_BAUCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|94219686|gb|ABF13845.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 198

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           +A PTE ++GL  D  +  A+  L  +KKR     LI   ++   +  +   + L++   
Sbjct: 31  VAYPTEAMFGLGCDPDSEKAVHTLLTLKKRDWQKGLILVAANYEQLANYIDDNSLNINQR 90

Query: 84  AKLF--WPGPLTLVLDLLSTTDIH---PLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
           A++F  WPGP+T  +   +TT        ST  ++ + F+      + L   +G P+   
Sbjct: 91  ARMFSLWPGPITWTIPARTTTPCWLTGKFSTLAVRISAFKP----VRMLCLAFGKPIVST 146

Query: 139 SANRSGQISITNV 151
           SAN SGQ    N+
Sbjct: 147 SANVSGQSPARNI 159


>gi|238898788|ref|YP_002924470.1| predicted ribosome maturation factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466548|gb|ACQ68322.1| predicted ribosome maturation factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 189

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 35/169 (20%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           IA PTE+V+GL  D  +  A+  L  +K+RP    LI   +    ++ + + + +S    
Sbjct: 22  IAYPTESVFGLGCDPDSQKAVNNLLLLKQRPQKKGLILIAASYQQLQPYINDEQVSAEQR 81

Query: 84  AKLF--WPGPLTLVL---------------DLLSTTDIHPL--------------STANL 112
            K+F  WPG LT V                 L      HPL              S+AN+
Sbjct: 82  EKIFTSWPGHLTWVFPTSIQTPFWLSGEFNSLAVRVSAHPLVRQLCSCFGKPLVSSSANM 141

Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161
                + PC  +++++  +GH L++ S N  G +  + ++  L+  + +
Sbjct: 142 TG---QTPCRTSREVVLQFGHQLSVLSGNVGGHMKPSEIRDALTDRLIR 187


>gi|284931148|gb|ADC31086.1| Putative translation factor/ribosome maturation factor (Sua5)
          [Mycoplasma gallisepticum str. F]
          Length = 182

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%)

Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
          + +PT+TV+G+   S+N     ++Y+ KKR     LI   SD+     +   D L L LA
Sbjct: 23 VILPTDTVFGVICKSKN-----KIYDFKKRDLNKKLIYFCSDVEQTNIN---DKLFLDLA 74

Query: 85 KLFWPGPLTLVLD 97
            FWPG LTL+ +
Sbjct: 75 NRFWPGKLTLIYN 87


>gi|198433752|ref|XP_002131934.1| PREDICTED: similar to ischemia/reperfusion inducible protein
           isoform 2 [Ciona intestinalis]
 gi|198433756|ref|XP_002131919.1| PREDICTED: similar to ischemia/reperfusion inducible protein
           isoform 1 [Ciona intestinalis]
          Length = 293

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 49/229 (21%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +      L  G  +A+PT+T+YG+A  +++  A+ +LYEIK R  + P+   V D+
Sbjct: 53  NEDVIESCVRILHRGGIVALPTDTLYGVACLAQSTEAVEKLYEIKARNPLKPVAICVGDL 112

Query: 68  ---------------SMVKKHASVDPLSLH----------LAKLFWPGPLTLVLDLLSTT 102
                          S+ K     D L             L +   PGP+T+V +   + 
Sbjct: 113 YKVCQWTRFPQGLIQSVSKTLGLEDQLDCQRPSSPGVLYGLLEDLLPGPVTIVTERSPSL 172

Query: 103 DIHPLSTANLKTAC--FRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
           +    +T N KT+    RVP   F K L      PLA+ SAN SG+ S   ++     S+
Sbjct: 173 N----NTLNPKTSLVGIRVPDHKFIKDLTNRLREPLALTSANVSGEESSLRIEDF--RSL 226

Query: 160 CKEIPLIIDGGISKIGLE------------STIVNVQCEK-KVRILRPG 195
             ++  ++D G  ++G              ST+V +  +    +ILRPG
Sbjct: 227 WPKLDAVVDDG--EVGTRYVNKTLQYAKEGSTVVQILNDGVSFKILRPG 273


>gi|227354900|ref|ZP_03839314.1| translation factor [Proteus mirabilis ATCC 29906]
 gi|227164982|gb|EEI49821.1| translation factor [Proteus mirabilis ATCC 29906]
          Length = 189

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           IA PTE V+G+  D  + +A+  L E+K+R     LI    +   +K +   + L+    
Sbjct: 22  IAYPTEAVFGVGCDPDSESAVMALLELKQRAIEKGLILIADNYEQLKPYIDDNALTQEQR 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            ++F  WPGP+T V+   S T      T    +   RV      K L   YG PL   SA
Sbjct: 82  ERMFASWPGPITWVIPAKSIT--PKWLTGRFSSLAVRVTDHPIVKALCVAYGKPLVSTSA 139

Query: 141 NRSG 144
           N SG
Sbjct: 140 NLSG 143


>gi|261340037|ref|ZP_05967895.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288317957|gb|EFC56895.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 206

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+   S    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 TLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGY--LGQQPTTVIDLTEDAP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|78484365|ref|YP_390290.1| SUA5/yciO/yrdC-like [Thiomicrospira crunogena XCL-2]
 gi|123556161|sp|Q31JQ7|RIMN_THICR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|78362651|gb|ABB40616.1| translation factor SUA5 [Thiomicrospira crunogena XCL-2]
          Length = 186

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 14/186 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS--- 68
           ++ A + +  G  +A PTE VYGL  D  N  A ++L  +K+RP    +I   S I+   
Sbjct: 8   IKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIASSIAQIE 67

Query: 69  -MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             VK H       +  +      P+T VL   +T ++    T    T   RV        
Sbjct: 68  PFVKLHNQAWTEKVLASWQVLNQPVTWVLP--ATDNVPEWITGGRNTVAVRVTQHPDVMA 125

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIVNVQ 184
           L      P+   SAN SG+  +T ++     + CK  P   I+ G +  I   S I   Q
Sbjct: 126 LCNQLNFPIVSTSANLSGEDPVTTME-----ACCKAFPALAIMQGNLMGISAPSQIWEAQ 180

Query: 185 CEKKVR 190
            +K++R
Sbjct: 181 TQKRLR 186


>gi|325287671|ref|YP_004263461.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489]
 gi|324323125|gb|ADY30590.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489]
          Length = 206

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 13/201 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHV 64
           +++A++K  + L  G  +  PT+TVYGL  D  N  A+ ++  IK      A    IC  
Sbjct: 13  NADAIKKVVDVLKKGGLVIYPTDTVYGLGCDITNTKALEKIARIKGVKLAKANFSFIC-- 70

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           +D+S + ++   +D  +  + K   PGP T +   L   +  P      KT   RVP   
Sbjct: 71  ADLSNLSEYVKQIDTATFKILKRALPGPYTFI---LPGNNNLPKDFKKKKTVGIRVPDNS 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +++  G+P+   S     + +  T    ++       + ++IDGG       ST+V
Sbjct: 128 IANAMVQALGNPIVSTSIRDEDELLEYTTDPELIYEKWDNLVDIVIDGGYGD-NTASTVV 186

Query: 182 NVQCEKKVRILRPGGLEIETL 202
           ++  + +  I+R G   I+  
Sbjct: 187 DL-SDGEPEIIREGKGSIDIF 206


>gi|229592266|ref|YP_002874385.1| hypothetical protein PFLU4879 [Pseudomonas fluorescens SBW25]
 gi|229364132|emb|CAY51764.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 209

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y +     +  A+ R+  +++    +      SD+S + 
Sbjct: 17  IKQAVEIIRAGGVVIYPTDSSYAIGCQIGDKGAVERVRRLRQLDDKHNFALICSDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
             A VD  +  L K   PGP T +L+         +HP      +T   RVP       L
Sbjct: 77  LFAKVDTGTFRLLKAHTPGPYTFILNATREVPRLLLHP----KKRTIGLRVPEHPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +   G PL   S    G        + +   + K++ LIIDGG    G  ST++N+
Sbjct: 133 LAELGEPLMSVSLIMPGDTEPLEDPYEMRQLLEKQVDLIIDGGFGG-GKASTVINL 187


>gi|317968708|ref|ZP_07970098.1| translation factor [Synechococcus sp. CB0205]
          Length = 195

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 14/182 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV-- 76
           L  G     PT+T+  LA     P     L+ IK+RP   P+I   +D   +  +  +  
Sbjct: 14  LQQGQAGVFPTDTLPALAT---RPEHASLLWTIKERPQNKPVILMGADAEQLFSNLGMTP 70

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
           +P  L L +  WPG LTLV+         ++P  +A       RVP C   ++L+   G 
Sbjct: 71  EPSWLRLMEQHWPGALTLVVPAEGERLEQLNPGGSA----LGLRVPACEQARELLRLSG- 125

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PLA  S NRSG+   T+ + +  +   + + L  +   +  G  ST++ ++     R+LR
Sbjct: 126 PLATTSTNRSGEDPCTSAEEV-QARFPQLLRLAPEPWPAPSGQASTVIALEPGGGWRLLR 184

Query: 194 PG 195
            G
Sbjct: 185 AG 186


>gi|88798246|ref|ZP_01113832.1| hypothetical protein MED297_13347 [Reinekea sp. MED297]
 gi|88779022|gb|EAR10211.1| hypothetical protein MED297_13347 [Reinekea sp. MED297]
          Length = 206

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 12/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++A E +  G  IA PT++ Y L     + R   AIRR+ +I ++  +  L+C   D+S
Sbjct: 17  IKQAAEIVLQGGVIAYPTDSAYALGCLMGNKRGMDAIRRIRQIDEKHNLT-LVCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126
            +  +A VD ++  L K   PGP T +L   +T ++   L     +T   RV        
Sbjct: 74  DLANYAKVDNVAFRLIKNNTPGPYTFILQ--ATREVPRKLLHPKRRTIGLRVLANNIASA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G P+   +          N  + +   +  E+ L+IDGG    G E + V    +
Sbjct: 132 LLDAVGEPMLSSTLILPNDEDPLNDPYYIREILEHELDLVIDGGFC--GFEESTVVSLLD 189

Query: 187 KKVRILRPGG 196
               ILR G 
Sbjct: 190 DVPEILRVGA 199


>gi|310767749|gb|ADP12699.1| conserved uncharacterized protein [Erwinia sp. Ejp617]
          Length = 206

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+ G  I  PT++ Y L     + +A+ R+  I++    +       D+S + 
Sbjct: 17  IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       L+E
Sbjct: 77  TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +   I K + LII GG   +G + T V    E   
Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGY--LGQQPTTVIDLTEVAP 192

Query: 190 RILRPGGLEIETLK 203
            ++R G  +I+  +
Sbjct: 193 EVVREGVGDIQPFR 206


>gi|91774703|ref|YP_544459.1| SUA5/yciO/yrdC-like protein [Methylobacillus flagellatus KT]
 gi|123380628|sp|Q1H4G9|RIMN_METFK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|91708690|gb|ABE48618.1| SUA5/yciO/yrdC-like protein [Methylobacillus flagellatus KT]
          Length = 180

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-AS 75
           FL +G  IA PTE+ +GL  D  N  A++RL  IK RP    LI      S ++K  A 
Sbjct: 8  HFLRSGGVIAYPTESCFGLGCDPTNHRALKRLLRIKGRPQRKGLIVIAQHFSQLQKLIAP 67

Query: 76 VDPLSLHLAKLFWPGPLTLVL 96
          V P         WPGP T ++
Sbjct: 68 VTPEQKQRMFTRWPGPHTWLV 88


>gi|261378564|ref|ZP_05983137.1| protein RimN [Neisseria cinerea ATCC 14685]
 gi|269145118|gb|EEZ71536.1| protein RimN [Neisseria cinerea ATCC 14685]
          Length = 200

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 19/194 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP       H  
Sbjct: 17  IIAASAQRKLRVYLKKGGLVAYPTESCYGLGCLPTLANALSKLTHLKKRPQ------HKG 70

Query: 66  DISMVKKHASVDPL----SLHLAKLF---WPGPLTLVLDLLSTTDIHP-LSTANLKTACF 117
            I +  +   + PL    S +L  +    WP P T +  LL+ + + P L          
Sbjct: 71  MIVIGNQFEQLRPLLKMPSENLQNILIKEWPAPKTFL--LLAKSGVLPKLRGKRRNKLAV 128

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP     ++L +  G PL   S NR+G+ +    + +      + +  +I G I +  L
Sbjct: 129 RVPDHDGARRLCQVLGMPLVSTSCNRAGKRACRTEREV-KRQFGRNV-WVIGGRIGRQKL 186

Query: 177 ESTIVNVQCEKKVR 190
            S I++ +  K++R
Sbjct: 187 PSQIIDGETGKRLR 200


>gi|111225292|ref|YP_716086.1| putative translation factor [Frankia alni ACN14a]
 gi|111152824|emb|CAJ64568.1| Putative translation factor [Frankia alni ACN14a]
          Length = 216

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 17/215 (7%)

Query: 1   MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ    +D    +  L  A   +  G  + +PT+T+YGL  D+ +  A+  L   K R  
Sbjct: 1   MQRFDCSDEAERARGLDAAVAAVGRGGLVVLPTDTLYGLGADAFDRDAVAALLAAKGRGR 60

Query: 57  MNPLICHVSDISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
             P+   V   S       +D   P    L   FWPG LTLV+   ++  +         
Sbjct: 61  NMPVPVLVG--SWRTLDGLIDRKTPQVKDLISAFWPGGLTLVVRHAAS--LRWDLGEGRG 116

Query: 114 TACFRVPCGFTKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
           T   R+P       IE  G   P+A+ SAN SGQ   T     +   +     + +DGG 
Sbjct: 117 TVAVRMP--LHPVAIELLGRTGPMAVSSANISGQPPATTADEAV-DQLGGAAEVYLDGGP 173

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
               + STIV+   E  V ++R G + ++ L+  +
Sbjct: 174 CPAAVPSTIVDCTGEVPV-VVRSGAVGLDALREVL 207


>gi|237748690|ref|ZP_04579170.1| translation factor [Oxalobacter formigenes OXCC13]
 gi|229380052|gb|EEO30143.1| translation factor [Oxalobacter formigenes OXCC13]
          Length = 208

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 4/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KA + + AG  I +PT++ Y L     +  A+ R+ +I++    + L     D+  V 
Sbjct: 18  VKKAADIIRAGGVIVLPTDSSYALVCRLDDKAAVDRIRQIRQIDERHLLTLLCRDLKEVG 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A VD  S  L K   PG  T +L   S      LS  + KT   R+P     + L++ 
Sbjct: 78  SYAQVDNGSYRLLKSATPGAFTFIL-RASKEVPRRLSHPSRKTIGLRIPDNRIVQALLDE 136

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   +    G+        ++   + K +  ++DGG   + L +T+V++   ++  
Sbjct: 137 LGEPLIGTTVILPGEEDPYTEGDVIQERLEKLVDAVVDGGACGL-LPTTVVDL-TGREAE 194

Query: 191 ILRPG 195
           ++R G
Sbjct: 195 LVRSG 199


>gi|215430188|ref|ZP_03428107.1| hypothetical protein MtubE_05805 [Mycobacterium tuberculosis
           EAS054]
 gi|289753378|ref|ZP_06512756.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           EAS054]
 gi|289693965|gb|EFD61394.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           EAS054]
          Length = 188

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           + +PT+TVYG+  D+ + +A+  L   K R    P+   V     ++    S+   +  L
Sbjct: 1   MVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVYSMPDGAREL 60

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L+LV+ + + +    L  A+  T   R+P      +L+   G P+A+ SAN 
Sbjct: 61  IRAFWPGALSLVV-VQAPSLQWDLGDAH-GTVMLRMPLHPVAIELLREVG-PMAVSSANI 117

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG     + +    S +   + + +D G S+    STIV++      R+LR G +  E +
Sbjct: 118 SGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLRQGPVSTERI 175

Query: 203 KRAISVE 209
              + V+
Sbjct: 176 AEVLGVD 182


>gi|153807484|ref|ZP_01960152.1| hypothetical protein BACCAC_01764 [Bacteroides caccae ATCC 43185]
 gi|149129846|gb|EDM21058.1| hypothetical protein BACCAC_01764 [Bacteroides caccae ATCC 43185]
          Length = 204

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P     +++  
Sbjct: 75  SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPNNNIIREIAR 131

Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185
               P+    +P         IT+   ++       + L+IDGGI   G+E + V V+C 
Sbjct: 132 LLDAPIMTTTLPYDEDEDLEYITD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187

Query: 186 EKKVRILRPG 195
           E +  I+R G
Sbjct: 188 EDEPEIVRQG 197


>gi|171322306|ref|ZP_02911138.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MEX-5]
 gi|172061054|ref|YP_001808706.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6]
 gi|171092368|gb|EDT37729.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MEX-5]
 gi|171993571|gb|ACB64490.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6]
          Length = 210

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAADIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD       K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175


>gi|188533748|ref|YP_001907545.1| hypothetical protein ETA_16060 [Erwinia tasmaniensis Et1/99]
 gi|188028790|emb|CAO96652.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
          Length = 206

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+ G  I  PT++ Y L     +  A+ R+  I+K    +       D+S + 
Sbjct: 17  IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKNALERICRIRKLDGNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       L+E
Sbjct: 77  TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 ALNEPMMSTSLILPGNDFTESDPEAIQDELGKLVDLIIHGGY--LGQQPTTVIDLTEDAP 192

Query: 190 RILRPGGLEIETLK 203
            ++R G  +++  +
Sbjct: 193 EVVREGVGDVQPFR 206


>gi|37528509|ref|NP_931854.1| putative ribosome maturation factor [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|81418038|sp|Q7MYI5|RIMN_PHOLL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|36787947|emb|CAE17064.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 189

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS   S A       L A   IA PTE V+GL  D  +  A+  L  +KKRP    LI  
Sbjct: 1   MSNEASPAFESVLTALKAEKVIAYPTEAVFGLGCDPDSEKAVNELLILKKRPWQKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +   ++ +     L+    K     WPGP+T V+   +        T    T   RV 
Sbjct: 61  ADNYEQLQPYLDDKLLTEEQKKAMFACWPGPVTWVIP--AKFSAPKWLTGQFATLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSG 144
                K+L   YG PL   SAN +G
Sbjct: 119 DHPLVKQLCTFYGKPLVSTSANLNG 143


>gi|322833322|ref|YP_004213349.1| Sua5/YciO/YrdC/YwlC family protein [Rahnella sp. Y9602]
 gi|321168523|gb|ADW74222.1| Sua5/YciO/YrdC/YwlC family protein [Rahnella sp. Y9602]
          Length = 206

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 6/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L        A+ R+  I++  + +       D+S + 
Sbjct: 17  INQAVELLRKGQVIVYPTDSGYALGCRLEEKNAMERICRIRQLDSNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       L+E
Sbjct: 77  TYAYVDNAAFRLMKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIAIALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +   + K + L+IDGG   IG + T V    E   
Sbjct: 135 ALGEPLMSTTLMLPGNDFAESDPEDIKDHLGKVVDLVIDGG--SIGQQPTTVVDLTEAAP 192

Query: 190 RILRPGG 196
            ++R G 
Sbjct: 193 EVVREGA 199


>gi|260171739|ref|ZP_05758151.1| hypothetical protein BacD2_07728 [Bacteroides sp. D2]
 gi|315920051|ref|ZP_07916291.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693926|gb|EFS30761.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 204

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSNI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P     +++  
Sbjct: 75  SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNIIREIAR 131

Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185
               P+    +P         +T+   ++       + L+IDGGI   G+E + V V+C 
Sbjct: 132 LLDAPIMTTTLPYEEHEDLEYMTD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187

Query: 186 EKKVRILRPG 195
           + ++ I+R G
Sbjct: 188 DDELEIIRQG 197


>gi|257094541|ref|YP_003168182.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047065|gb|ACV36253.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 208

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 14/188 (7%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q +SI   N     L++A E +  G  IA+PT++ Y L     +  A+ R+  ++     
Sbjct: 3   QYLSIHPENPQARLLQRAAEVIGQGGVIALPTDSSYALGCQLGDKAAVERIRSLRGVDDR 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKT 114
           + L     D+S + + A VD     L K   PG  T +L+    L    +HP      KT
Sbjct: 63  HHLTLMCRDLSQIGQFARVDNARYRLLKATTPGSYTFILEGTRELPRRVLHP----KRKT 118

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              RVP    T  L+   G PL   +   +G          +   +  ++ LI+DGG  +
Sbjct: 119 IGLRVPAHVVTLALLAQLGEPLLTSTLIVAGDDEPLTEAWEIRDRLDAQLELILDGG--R 176

Query: 174 IGLESTIV 181
            G+E T V
Sbjct: 177 CGVEPTSV 184


>gi|332879949|ref|ZP_08447634.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682160|gb|EGJ55072.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 208

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 13/197 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDISMV 70
           K  E L  G  I  PT+TVYGL  D  N  A+ ++  IK      A    +C  SD+  +
Sbjct: 19  KIVEVLRNGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVC--SDLKNL 76

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128
             +   +D  +  L K   PG  T +   +   +  P      KT   RVP     + ++
Sbjct: 77  SDYVKQIDSSTFKLLKRALPGAYTFI---MQGNNNLPKDFKKKKTVGIRVPDNLIARTIV 133

Query: 129 ETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           E  G+P+   S  +    I  T    ++       + ++IDGG       ST++++  ++
Sbjct: 134 ERLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNLVDIVIDGGYGD-NTASTVIDLSGDE 192

Query: 188 KVRILRPGGLEIETLKR 204
            V ++R G  +++ + R
Sbjct: 193 PV-VIREGKGDVDIISR 208


>gi|323700777|ref|ZP_08112689.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. ND132]
 gi|323460709|gb|EGB16574.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans
           ND132]
          Length = 203

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 12/197 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  + L +G  +  PTET+Y L  D+ +  A  R+ E+K R    PL   +  + M+ 
Sbjct: 1   MQELLKVLRSGGIVIYPTETLYALGCDATSEAACNRVAEVKGRSEERPLPLIIGGMDMLD 60

Query: 72  KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                   S L LA  FWPGPL++++  L       LS     T+       F  +L   
Sbjct: 61  LVTGEKTRSLLDLAGAFWPGPLSILVKALPDLPAW-LSDDEGYTSVRWSGHPFASELSRR 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-----ISKIGLESTIVNVQC 185
           +  P+   SAN SG+         L   I   +  ++DG        +    ST+V +  
Sbjct: 120 FRKPIVATSANLSGKPPAA-----LPEDIDPALLEMVDGSYFDPPWPRGHKASTVVRLLG 174

Query: 186 EKKVRILRPGGLEIETL 202
             K+ I+R G + I+ L
Sbjct: 175 SSKLEIIREGEISIKKL 191


>gi|298346219|ref|YP_003718906.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 43063]
 gi|304390018|ref|ZP_07371972.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236280|gb|ADI67412.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 43063]
 gi|304326500|gb|EFL93744.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 215

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-- 82
           + +PT+TVYG+A     P A+ RL   K R    P    VS  + ++   + +P +    
Sbjct: 29  LVMPTDTVYGIASVPFAPVAVSRLQNAKGRGEDFPPPVLVSGPAALEDLMAPEPQASASQ 88

Query: 83  ------LAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYG 132
                 LA+ FWPG LT+++        +P    +L     T   R P       I  Y 
Sbjct: 89  RRAARLLAERFWPGALTIIV------TANPALGWDLGQTHGTIALRQPDHPRALEILRYT 142

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            PLA+ SAN   +   T++    ++   + + + +D G+S  G  STIV +  +   R+L
Sbjct: 143 GPLAVTSANLHTRPPATDIAAA-TNYFGERVSVYVDAGVSPSGHPSTIVRL-TQDSPRLL 200

Query: 193 RPGGLEIETLKRAI 206
           R G + +  +  A+
Sbjct: 201 RQGDIPLSDILAAL 214


>gi|330469857|ref|YP_004407600.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032]
 gi|328812828|gb|AEB47000.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032]
          Length = 214

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 11/206 (5%)

Query: 5   SITDSN-ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           S+ D +  +  A E +  G  + +PT+TVYG+  D+  P A+R L + K  P   P +  
Sbjct: 7   SMADRDRGIAAAIEAVRNGELVVLPTDTVYGIGADAFTPYAVRALLDAKDAPHSPPPVLI 66

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            S  ++     S+   +  L + FWPG LT+++    +  +      +      R+P   
Sbjct: 67  GSRHTLDGLVFSLPTAARDLVEAFWPGALTILVQ--HSASLRWDLGDDSGVVAVRMPLHP 124

Query: 124 TKKLIETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               +     P+A+ SAN+ GQ   ++    +  L  S+       ++ G +   + STI
Sbjct: 125 VALEVLRETGPMAVASANKFGQQPALTADEARDQLGYSVRA----YLEAGPAVDPVPSTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAI 206
           V++  +  V ++R GG+ +  L+  +
Sbjct: 181 VDLTGDVPV-LVREGGIGLAKLREVV 205


>gi|31544343|ref|NP_852921.1| Putative translation factor/ribosome maturation factor
          [Mycoplasma gallisepticum str. R(low)]
 gi|31541187|gb|AAP56489.1| Putative translation factor/ribosome maturation factor (Sua5)
          [Mycoplasma gallisepticum str. R(low)]
 gi|284930383|gb|ADC30322.1| Putative translation factor/ribosome maturation factor (Sua5)
          [Mycoplasma gallisepticum str. R(high)]
          Length = 182

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%)

Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
          + +PT+TV+G+   S+N     ++Y+ KKR     LI   SD+     +   D L L LA
Sbjct: 23 VILPTDTVFGVICKSKN-----KIYDFKKRDLNKKLIYFCSDVEQTNIN---DKLFLDLA 74

Query: 85 KLFWPGPLTLVLD 97
            FWPG LTL+ +
Sbjct: 75 NRFWPGKLTLIYN 87


>gi|16329324|ref|NP_440052.1| hypothetical protein sll0216 [Synechocystis sp. PCC 6803]
 gi|1651805|dbj|BAA16732.1| sll0216 [Synechocystis sp. PCC 6803]
          Length = 210

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 92/191 (48%), Gaps = 7/191 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           C+ L  G  +  PT+TVY +  D  +  A++R+ ++K+     PL    S +S + ++A 
Sbjct: 21  CKSLRQGAIMLYPTDTVYAIGCDLNDKNAVQRVRQLKQLSNNKPLTFLCSSLSNIAEYAV 80

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETYGH 133
           V   +  L +   PGP T +L   +T  +  L      KT   RVP     ++++++ G+
Sbjct: 81  VADDAYRLMRKLIPGPYTFLLP--ATKQVPKLVVEPKRKTTGIRVPDRPICQEILQSLGN 138

Query: 134 PLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
           P+   SA+   Q   +   K  L     K + +IID         S+I++   +K+ +++
Sbjct: 139 PIISTSAHLPDQDEFVMAEKAKLFDLFDKLVDIIIDDDREPGYQTSSIIDF-TDKEPKVV 197

Query: 193 RPGGLEIETLK 203
           R  GL  ETL+
Sbjct: 198 R-EGLGWETLR 207


>gi|290477158|ref|YP_003470073.1| putative RNA-binding protein with unique protein fold, with
           YrdC/RibB domain [Xenorhabdus bovienii SS-2004]
 gi|289176506|emb|CBJ83315.1| putative RNA-binding protein with unique protein fold, with
           YrdC/RibB domain [Xenorhabdus bovienii SS-2004]
          Length = 189

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC---HVSDISMVKKHASVDPLSL 81
           IA PTE V+GL  D  +  A+  L  +K RP    LI        + +      ++ +  
Sbjct: 22  IAYPTEAVFGLGCDPDSEKAVNELLSLKNRPWEKGLILIADSYERLCLYIDDEQLNDIQK 81

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
                FWPGP+T V+   +TT      T    T   RV      K+L   YG  L   SA
Sbjct: 82  ETVFSFWPGPVTWVIPAKTTT--PKWLTGQFSTLAVRVTDHPLVKQLCSFYGKALVSTSA 139

Query: 141 NRSG 144
           N SG
Sbjct: 140 NLSG 143


>gi|85060221|ref|YP_455923.1| hypothetical protein SG2243 [Sodalis glossinidius str. 'morsitans']
 gi|123518722|sp|Q2NQQ7|RIMN_SODGM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|84780741|dbj|BAE75518.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 190

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83
           IA PTE V+GL  +  + +A++ L  +K+RP    LI   +  + +K++           
Sbjct: 23  IAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLILVAAHYAQLKEYIDDDALDDAAR 82

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           +++F  WPGP+T V+ +  TT      T    +   RV   F   ++L   +G PL   S
Sbjct: 83  SRIFASWPGPVTWVIPVCPTTP--SWLTGQHASLAVRV-SAFEPVRRLCLAFGKPLVSTS 139

Query: 140 ANRSGQ 145
           AN +GQ
Sbjct: 140 ANLTGQ 145


>gi|121997386|ref|YP_001002173.1| Sua5/YciO/YrdC/YwlC family protein [Halorhodospira halophila SL1]
 gi|121588791|gb|ABM61371.1| translation factor SUA5 [Halorhodospira halophila SL1]
          Length = 208

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  IA PT++ Y L     +  A+ R+ EI++    +       D+  + 
Sbjct: 17  INQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLDNSHNFTMACKDLKDIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A ++  +  L K   PGP T +  L +T+++   L     KT   RVP    ++ L+ 
Sbjct: 77  TYAKMENYAYRLLKSHTPGPYTFI--LRATSEVPRRLQHPKRKTIGIRVPDHPASRALLN 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G PL   +    G     N    +   I K I  ++ GG +  G+ ST++++  E   
Sbjct: 135 TLGEPLMSVTLQMPGDDMPLNDPEAIQERIGKLIDAVVAGGPTGGGV-STVIDLTGE-AA 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|312962721|ref|ZP_07777210.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens WH6]
 gi|311283096|gb|EFQ61688.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens WH6]
          Length = 222

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y +     +  A+ R+  +++    +      SD+S + 
Sbjct: 30  IKQAVEIIRAGGVVIYPTDSSYAIGCQIGDKGAVERVRRLRQLDDKHNFALICSDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
             A VD  +  L K   PGP T +L+         +HP      +T   RVP       L
Sbjct: 90  LFAKVDTGTFRLLKAHTPGPYTFILNATREVPRLLLHP----KKRTIGLRVPEHPIALAL 145

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +   G PL   S    G        + +   + K++ LIIDGG    G  ST++N+
Sbjct: 146 LAELGEPLMSVSLIMPGDTEPLEDPYEMRQLLEKQVDLIIDGGFGG-GKASTVINL 200


>gi|291565855|dbj|BAI88127.1| putative translation factor (SUA5) [Arthrospira platensis NIES-39]
          Length = 203

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 21/185 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81
           I  PT+TV  LA     P     +++ K+RP   PLI   +    + +        L   
Sbjct: 20  ITFPTDTVPALAA---RPDKAEAIFQTKQRPPDKPLILMGATAESLWQFVDSQTWELECW 76

Query: 82  -HLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138
             +A+ +WPG LTLVL   +++ + P ++  +  T   RVP C    ++++  G PLA  
Sbjct: 77  QQIARQYWPGALTLVLP--ASSAVPPAVNPTDPTTIGLRVPKCEIALEILKRTG-PLATT 133

Query: 139 SANRSGQISITNVKHILSSSICKEIPLII----DGGISKIGLESTIVNVQCEKKVRILRP 194
           SAN SGQ  +  V     + I ++ P ++        S   + ST+V         ILR 
Sbjct: 134 SANLSGQPPLLTV-----ADIDRQFPEVLSLKESPPESGSAIPSTVVRWTKNGDWEILRS 188

Query: 195 GGLEI 199
           G +E+
Sbjct: 189 GAVEL 193


>gi|295086691|emb|CBK68214.1| translation factor SUA5 [Bacteroides xylanisolvens XB1A]
          Length = 204

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P     +++  
Sbjct: 75  SEYAKVDNNVFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNIIREIAR 131

Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185
               P+    +P         +T+   ++       + L+IDGGI   G+E + V V+C 
Sbjct: 132 LLDAPIMTTTLPYEEHEDLEYMTD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187

Query: 186 EKKVRILRPG 195
           + ++ I+R G
Sbjct: 188 DNELEIVRQG 197


>gi|33866507|ref|NP_898066.1| hypothetical protein SYNW1975 [Synechococcus sp. WH 8102]
 gi|33633285|emb|CAE08490.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 201

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA--SVDPLSLHLA 84
           IPT+TV GLA+    P     ++ +K+RPA  PLI   +   ++ +HA  S    +  +A
Sbjct: 26  IPTDTVPGLAI---APPHAGDIWRLKRRPADKPLILMGATAEVLLRHAQPSCRDDARWMA 82

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC--FRVP-CGFTKKLIETYGHPLAIPSAN 141
           +  WPG LTLV+          L   N    C   R+P C  +++L+   G PLA  SAN
Sbjct: 83  ERHWPGALTLVVPAHGAV----LEALNPGGTCLGLRIPNCRQSRELLHRTG-PLATSSAN 137

Query: 142 RSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SG+ +    +   ++     +P L     +   G  ST+++     +  +LR G +
Sbjct: 138 PSGEPAAMTPEQ--AAVYFPNLPQLGPQPWLPPSGQASTVISWTSSGRWNVLRQGAV 192


>gi|115352187|ref|YP_774026.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD]
 gi|115282175|gb|ABI87692.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD]
          Length = 210

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S + 
Sbjct: 17  IKQAADIVSKGGVIAMPTDSSYALACHLDDKGAVERVRRIRGLDDKQHLSLLVRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
             A VD       K   PGP   +L   +T ++   LS  + KT   RVP    T  L+E
Sbjct: 77  NFAMVDNRQYRQIKSVTPGPYVFILQ--ATKEVPRRLSHPSRKTIGLRVPDHAITLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           + G PL   +          N    + + + K++ L+IDGG
Sbjct: 135 SLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGG 175


>gi|104782899|ref|YP_609397.1| hypothetical protein PSEEN3903 [Pseudomonas entomophila L48]
 gi|95111886|emb|CAK16610.1| conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein
           [Pseudomonas entomophila L48]
          Length = 221

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 11/181 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAI---RRLYEIKKRPAMNPLICHVSDIS 68
           +++A E +  G  +  PT++ Y +     +  AI   RRL ++ K      L C   D+S
Sbjct: 29  IKQAVEIIRKGGVVVYPTDSAYAMGCQIGDKNAIERVRRLRQLDKNHNFTLLCC---DLS 85

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126
            +   A +D  +  L K   PGP T +L+  +T ++   L     +T   RVP       
Sbjct: 86  QMGTFAKIDTATFRLLKAHIPGPYTFILN--ATREVPRLLMHEKRRTIGLRVPSNPIVLA 143

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G        + +   +   + LIIDGG   +   ST++++  +
Sbjct: 144 LLEELGEPLMSVSLILPGDEEPMTDPYEIRQRLEHHVDLIIDGGFGDLK-ASTVIDLSGD 202

Query: 187 K 187
           +
Sbjct: 203 E 203


>gi|86609790|ref|YP_478552.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558332|gb|ABD03289.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 237

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++R+    L  G  +  PT+TVY +  D+ +  A+ R+  IK+     PL      +S
Sbjct: 14  ARSIRRIAAALREGAVMLYPTDTVYAIGCDATHKQAVERVRRIKQLSNDKPLTFLCPSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTK 125
            +  +A V   +  L +   PGP T    LL  T + P  +     KT   RVP     +
Sbjct: 74  RIAHYAQVTDSAYRLMRRLIPGPFTF---LLPATKLVPKLVMEPKRKTTGIRVPDSAICQ 130

Query: 126 KLIETYGHPLAIPSANRSG 144
            L+E  G+P+   SA   G
Sbjct: 131 ALLEELGNPIVSTSAKLGG 149


>gi|332883355|gb|EGK03638.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas mossii DSM 22836]
          Length = 187

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 14/189 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-ISMV 70
           ++KA E L +G  I  PT+T++G+  D+ N  A+ R+YE+K+R     LI  + + I + 
Sbjct: 5   IKKAFEVLVSGGLILYPTDTIWGIGCDATNEEAVHRVYELKRRVDSKALITLLDNPIKLD 64

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
                V  ++  L +L    PLT++ D     ++ P   A   +   R+    F+++L +
Sbjct: 65  YYIDEVPSIAWDLIELS-EKPLTIIYD--GARNVAPNLMAEDGSLAIRITKEKFSQELCK 121

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-----DGGISKIGLESTIVNVQ 184
            +   L   SAN SG+ +  N   I S  I + +  I+     D   SK    S+I+ + 
Sbjct: 122 RFRKALVSTSANISGEPAPANFDDI-SEEIKQGVDYIVKYRQDDTNKSKA---SSIIKLG 177

Query: 185 CEKKVRILR 193
              +V+I+R
Sbjct: 178 KTGEVKIIR 186


>gi|289208889|ref|YP_003460955.1| Sua5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. K90mix]
 gi|288944520|gb|ADC72219.1| Sua5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. K90mix]
          Length = 204

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 10/174 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +R+  + L  G  IAIPT+  Y LA    D      IRR+ ++ +   +  L+C   D+S
Sbjct: 14  VRQVLDRLHEGTVIAIPTDACYALACLPGDKAGADRIRRIRQVDETHHLT-LLCR--DLS 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126
            +  +A VD  +  L K   PGP T +L   +T ++   L     +T   RVP       
Sbjct: 71  ELGVYAKVDNTAFRLMKGLTPGPYTFILP--ATREVPRRLQHPKRRTIGLRVPDSRIVSA 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+E  G PL   +    G+    +   ++   + K +  ++DGG   +   S I
Sbjct: 129 LLEELGSPLMTATLQLPGEDLPLSEPWVIDERLSKVVDEVVDGGAGTLEPTSVI 182


>gi|331017684|gb|EGH97740.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 185

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI   +
Sbjct: 1   MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAN 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164


>gi|194289302|ref|YP_002005209.1| hypothetical protein RALTA_A1178 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223137|emb|CAQ69142.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424]
          Length = 207

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 4/164 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L++A + L  G  +A+PT++ Y LA    +  A+ RL  ++     + L     D+S
Sbjct: 14  SRLLKQAAQILQKGGLVALPTDSSYALACRLDDKAAVERLRRLRGIDDRHHLTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126
            +   A VD       K   PGP   +L+  +T ++   LS    KT   RVP       
Sbjct: 74  ELGNFARVDNRQYRWLKGATPGPYVFILE--ATKEVPRRLSHPARKTIGVRVPEHAIPLA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           L+   G PL   +    G  +  N    + + + K++ L++DGG
Sbjct: 132 LLGETGEPLISATLQLPGDEAPLNDPAQIRARLEKQLDLVVDGG 175


>gi|94499321|ref|ZP_01305859.1| putative translation factor (SUA5) [Oceanobacter sp. RED65]
 gi|94428953|gb|EAT13925.1| putative translation factor (SUA5) [Oceanobacter sp. RED65]
          Length = 207

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L  G    IPT+  Y LA   ++  A+ R+  I+K    +       D++ + 
Sbjct: 17  VKQAADILKQGGLAVIPTDCAYALACHIQDKQALERVKRIRKLDDKHNFTLMCRDLTEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD  +  L K   PG  T +LD   T ++   L     K    RVP       ++E
Sbjct: 77  TYAKVDNTAYRLLKNHTPGAFTFILD--GTREVPRRLMHPKRKQIGIRVPDNAIACAIME 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +  + +   +   + L++DGG    G E+T V      + 
Sbjct: 135 ELGEPLMTTSLIMPGDTMPLSDPYDIRQMLEHAVDLVVDGGYC--GFEATTVVDMTGDEY 192

Query: 190 RILRPG 195
            I R G
Sbjct: 193 SITRQG 198


>gi|166363887|ref|YP_001656160.1| hypothetical protein MAE_11460 [Microcystis aeruginosa NIES-843]
 gi|166086260|dbj|BAG00968.1| hypothetical protein MAE_11460 [Microcystis aeruginosa NIES-843]
          Length = 213

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++++ C  L  G  +  PT+TVY +  D    +A+ R+ +IK+     PL    S +S +
Sbjct: 16  SIQEICHALKNGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKQLSNDKPLTFLCSSLSNI 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKKL 127
            ++A V   +  + +   PGP T    LL  T + P    N   KT   RVP     + +
Sbjct: 76  SEYAVVSDYAYKIMRRVIPGPYTF---LLPATKLVPKVVMNPKRKTTGIRVPDHVICRTI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKE----IPLIIDGGISKIGLESTIVNV 183
           +ET  +P+   SA+   Q      K + S+ +       + LII+ G +     STIV+ 
Sbjct: 133 LETLENPIISSSAHLPDQEGDFPTKGLESARLFDALDHIVDLIIEDGSAPGSEVSTIVDF 192

Query: 184 QCEKKVRILRPG 195
             ++   I+R G
Sbjct: 193 TGDQP-DIVRQG 203


>gi|325267209|ref|ZP_08133874.1| translation factor RimN [Kingella denitrificans ATCC 33394]
 gi|324981326|gb|EGC16973.1| translation factor RimN [Kingella denitrificans ATCC 33394]
          Length = 207

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 31/200 (15%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---------- 55
           I    AL +   +L  G  IA PTE+ YGL     +  AIRR+  +KKRP          
Sbjct: 24  IQSPRALWRLRAYLKRGGIIAYPTESCYGLGGLPTHAGAIRRIIRLKKRPQNKGLIVIGN 83

Query: 56  ---AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTAN 111
               + PL+C + D +  +             +  WP P T VL     T +HP L  A 
Sbjct: 84  ELQQLQPLLCRLPDDTQQQ------------LQNIWPAPKTFVLS--CRTKVHPMLRGAR 129

Query: 112 LKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            +    RVP     +++       L   S NR+ Q    N K        +++  I+ G 
Sbjct: 130 RRQLATRVPDHLLARQICREAKSALISTSCNRAKQKPCRNSKEA-RKRFGRQV-WILGGQ 187

Query: 171 ISKIGLESTIVNVQCEKKVR 190
           + K    S I++   + ++R
Sbjct: 188 VGKRKNPSKIIDWSTKTQLR 207


>gi|313669306|ref|YP_004049590.1| hypothetical protein NLA_20420 [Neisseria lactamica ST-640]
 gi|313006768|emb|CBN88238.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 200

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +I   +
Sbjct: 17  IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
               ++    +   SL  + +  WP P T +L   S   +  L          R+P    
Sbjct: 77  QFEQLQPLLQMPSESLQAMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRIPDHAG 135

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L +  G PL   S NR+G+ +    + +      +++  I+ G I +    S I++ 
Sbjct: 136 ARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193

Query: 184 QCEKKVR 190
           +  K++R
Sbjct: 194 ETGKRLR 200


>gi|167752335|ref|ZP_02424462.1| hypothetical protein ALIPUT_00579 [Alistipes putredinis DSM 17216]
 gi|167660576|gb|EDS04706.1| hypothetical protein ALIPUT_00579 [Alistipes putredinis DSM 17216]
          Length = 192

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T   A+ +A   L  G  I  PT+TV+G+  D+ N  A+ R+Y +K+      ++   + 
Sbjct: 5   TMEQAVTEAVRILREGGVILYPTDTVWGIGCDATNAEAVERIYRLKRSENKKSMLVLCAT 64

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPC- 121
             MV ++    P      +     PLTL+L   S         ANL     T   R+P  
Sbjct: 65  PDMVVRYVHKAPGIAFEVQELATKPLTLILPGASGV------AANLIPEEGTLGVRIPDH 118

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
            F + ++   G P+   SAN SG+ +  N+  I
Sbjct: 119 AFCQAMLRKLGRPIVSTSANISGEDTPRNLAEI 151


>gi|332662189|ref|YP_004444977.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331003|gb|AEE48104.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 205

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 12/199 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR---RLYEIKKRPAMNPLICHV 64
           +   + +  E L+ G  I  PT+TVYGL  D  N  A+    RL  +  + AM  +IC  
Sbjct: 11  EGRKINQVIEKLNEGGIIIYPTDTVYGLGCDINNQAAVEKICRLRRLDPKDAMLAIICK- 69

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
            DIS V++    +D  +  L K   PG  T +L   +   +  +     KT   R+P   
Sbjct: 70  -DISQVQEFTQQIDNPTFKLLKRNLPGAFTFILP--AAGSVPKMFRNRKKTIGIRIPDHN 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              +L+E  G P+   S     +I        ++     K + ++ID G +     ST+V
Sbjct: 127 IPLQLVEGLGRPILTTSLKSDDEILEYFTDPELIYEDFQKLVDIVIDSG-NGGNTPSTVV 185

Query: 182 NVQCEKKVRILRPGGLEIE 200
           +   EK + +LR G   +E
Sbjct: 186 DCTQEKPI-VLRLGAGMLE 203


>gi|332307257|ref|YP_004435108.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174586|gb|AEE23840.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 206

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++ACE + +G  +  PT++ Y +     +  A+ ++  I++    +       D+S + 
Sbjct: 17  IKQACELIHSGEVVVYPTDSGYSIGCHMDDKNALEQICRIRQIGKDHNFTLMCRDMSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
           ++A VD  +  + K   PGP T +L   +T ++   L     +T   RVP       L+E
Sbjct: 77  EYARVDNAAFRMIKNNTPGPYTFILK--ATKEVPKRLQNPKRRTIGIRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   +     +I   +    +   + K++ LII GG   +G + T V    E + 
Sbjct: 135 ELGEPMMSTTLILPSEIVAESDPDEIRDKLEKQVGLIIHGGF--LGEQPTTVVDLSEGEP 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 VIIRQG 198


>gi|159027852|emb|CAO87065.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 213

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++++ C  L  G  +  PT+TVY +  D    +A+ R+ +IK+     PL    S +S +
Sbjct: 16  SIQEICHALKNGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKQLSNDKPLTFLCSSLSNI 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKKL 127
            ++A V   +  + +   PGP T    LL  T + P    N   KT   RVP     + +
Sbjct: 76  SEYAVVSDYAYKIMRRVIPGPYTF---LLPATKLVPKVVMNPKRKTTGIRVPDHVICRTI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI----LSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +ET  +P+   SA+   Q      K +    L  ++   + LII+ G +     STIV+ 
Sbjct: 133 LETLENPIISSSAHLPDQEGDFPTKGLETARLFDALDHVVDLIIEDGSAPGSEVSTIVDF 192

Query: 184 QCEKKVRILRPG 195
             ++   I+R G
Sbjct: 193 TSDQP-DIVRQG 203


>gi|304415190|ref|ZP_07395904.1| putative ribosome maturation factor [Candidatus Regiella
           insecticola LSR1]
 gi|304282960|gb|EFL91409.1| putative ribosome maturation factor [Candidatus Regiella
           insecticola LSR1]
          Length = 189

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           IA PTE+V+GL  D  +  A+  L  +K+R     LI   ++   ++ +     LS+   
Sbjct: 22  IAYPTESVFGLGCDPNSEKAVNALLTLKQRSRQKGLILVAANYDQLQPYLDDSQLSMAQR 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPG +T V+   +  D     T    +   RV      ++L   YG PL   SA
Sbjct: 82  ASVFSSWPGAITWVIP--AKRDTPDWLTGRFNSLAVRVSAHPLVRQLCTCYGKPLVSTSA 139

Query: 141 NRSG 144
           N SG
Sbjct: 140 NLSG 143


>gi|259908328|ref|YP_002648684.1| hypothetical protein EpC_16760 [Erwinia pyrifoliae Ep1/96]
 gi|224963950|emb|CAX55455.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|283478266|emb|CAY74182.1| Uncharacterized protein yciO [Erwinia pyrifoliae DSM 12163]
          Length = 206

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+ G  I  PT++ Y L     + +A+ R+  I++    +       D+S + 
Sbjct: 17  IKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       L+E
Sbjct: 77  TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +   I K + LII GG   +G + T V    E   
Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGY--LGQQPTTVIDLTEVAP 192

Query: 190 RILRPGGLEIETLK 203
            ++R G  +++  +
Sbjct: 193 EVVREGVGDVQPFR 206


>gi|160886924|ref|ZP_02067927.1| hypothetical protein BACOVA_04938 [Bacteroides ovatus ATCC 8483]
 gi|237721208|ref|ZP_04551689.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293370410|ref|ZP_06616964.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f]
 gi|299148444|ref|ZP_07041506.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23]
 gi|156107335|gb|EDO09080.1| hypothetical protein BACOVA_04938 [Bacteroides ovatus ATCC 8483]
 gi|229449004|gb|EEO54795.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292634558|gb|EFF53093.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f]
 gi|298513205|gb|EFI37092.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23]
          Length = 204

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A VD     L K   PGP T +   L+ T+  P    N K    R+P     +++  
Sbjct: 75  SEYAKVDNNIFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNIIREIAR 131

Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185
               P+    +P         +T+   ++       + L+IDGGI   G+E + V V+C 
Sbjct: 132 LLDAPIMTTTLPYEEHEDLEYMTD-PELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCT 187

Query: 186 EKKVRILRPG 195
           + ++ I+R G
Sbjct: 188 DDELEIIRQG 197


>gi|119487019|ref|ZP_01620891.1| Sua5/YciO/YrdC/YwlC-like protein [Lyngbya sp. PCC 8106]
 gi|119455948|gb|EAW37082.1| Sua5/YciO/YrdC/YwlC-like protein [Lyngbya sp. PCC 8106]
          Length = 248

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 24/197 (12%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL    S +S +  +A+V  
Sbjct: 52  LRSGAVMLYPTDTVYAIGCDLTVKSAVERVRQIKQLSNDKPLTFLCSSLSNISDYANVSN 111

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLIETYGHPL 135
            +  + K   PG  T    LL  T + P  + +   KT   RVP   F   LIET G+P+
Sbjct: 112 QAYRIIKRLIPGSYTF---LLPATKLVPRLVMSPKRKTTGIRVPDNHFCLALIETLGNPI 168

Query: 136 AIPSAN--------------RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              SA+              R+G +     K  L   + K + +I+D G       STI+
Sbjct: 169 ISTSAHITNEEEGQAPLAVPRTGNMG----KAELFDCLEKLVDIIVDDGSDPGYQVSTIL 224

Query: 182 NVQCEKKVRILRPGGLE 198
           ++  ++ + +    G E
Sbjct: 225 DLTGDEPILVREGKGWE 241


>gi|158337414|ref|YP_001518589.1| hypothetical protein AM1_4293 [Acaryochloris marina MBIC11017]
 gi|158307655|gb|ABW29272.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 194

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81
           ++ PT+TV  LA     P    +++  K+R    PLI   +   M+  +   D   L   
Sbjct: 19  VSFPTDTVPALAA---RPDQASQIFAAKQRQPDKPLILMGASPEMLWPYVRKDGKELNQW 75

Query: 82  -HLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
             +A  +WPG LTLVL         ++PL+  ++     RVP     ++I     PLA  
Sbjct: 76  QQMAADYWPGALTLVLPACDRVPPAMNPLTPDSIG---IRVPNSQVAQMILQQTGPLATT 132

Query: 139 SANRSGQISITNVKHI 154
           S NRSGQ ++T V+ I
Sbjct: 133 SINRSGQPALTTVEAI 148


>gi|68249744|ref|YP_248856.1| hypothetical protein NTHI1369 [Haemophilus influenzae 86-028NP]
 gi|229844847|ref|ZP_04464985.1| putative translation factor, SUA5 [Haemophilus influenzae 6P18H1]
 gi|68057943|gb|AAX88196.1| putative translation factor, SUA5 [Haemophilus influenzae 86-028NP]
 gi|229812228|gb|EEP47919.1| putative translation factor, SUA5 [Haemophilus influenzae 6P18H1]
 gi|301169939|emb|CBW29543.1| conserved protein [Haemophilus influenzae 10810]
          Length = 207

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A+V+  +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYATVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P+   + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|330957382|gb|EGH57642.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 185

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164


>gi|326335829|ref|ZP_08202008.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691973|gb|EGD33933.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 186

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           FL     I  PT+T++GL  D+ +   I R+ +IK+R      I  VS + M+K++  + 
Sbjct: 13  FLQENKVILYPTDTIWGLGCDAYSYQGIERIRQIKRRDINKNFILLVSSLGMLKQYVKI- 71

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPLA 136
           P  +         P +++   +  + + PL+  N  +  FR V   F ++LI+ +G P+ 
Sbjct: 72  PSEIVFFLKSQTRPTSVIYQEVCNSYL-PLAKDN--SLAFRIVQDEFCRELIKAFGKPII 128

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIID 168
             SAN +G+ S      +  S I +EI  ++D
Sbjct: 129 STSANITGEPS-----PMTFSQISEEIKNLVD 155


>gi|261856673|ref|YP_003263956.1| SUA5/yciO/yrdC domain protein [Halothiobacillus neapolitanus c2]
 gi|261837142|gb|ACX96909.1| SUA5/yciO/yrdC domain protein [Halothiobacillus neapolitanus c2]
          Length = 185

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%)

Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
          LR+  + L  G  IA PTE V+GL  D  +  A+ R+  +K+R     LI   +++  + 
Sbjct: 8  LRQTGQILSQGGVIAYPTEAVFGLGCDPLDAIAVERILTLKQRDWRKGLILLAANLEQLH 67

Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96
             S+ P  L      WPGP T V+
Sbjct: 68 PWISLSPEELAKISAHWPGPATWVV 92


>gi|317049802|ref|YP_004117450.1| SUA5/yciO/yrdC domain-containing protein [Pantoea sp. At-9b]
 gi|316951419|gb|ADU70894.1| SUA5/yciO/yrdC domain protein [Pantoea sp. At-9b]
          Length = 191

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 6   ITDSNALRKACEF----LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +T  +AL  + +F    L     IA PTE V+GL  D  +  A+  L  +K+RP    LI
Sbjct: 1   MTQEHALPGSLDFCIEQLQQQAVIAYPTEAVFGLGCDPDSEHAVMSLLALKQRPVEKGLI 60

Query: 62  CHVSDISMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
              +D + ++ + +   LS +   ++F  WPGP+T V+   ++       T    +   R
Sbjct: 61  LIAADYAQLEPYVADQELSVVQRERMFASWPGPVTYVVP--ASPHTPRWLTGRFDSLAIR 118

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQ 145
           V      + L   +G PL   SAN SG+
Sbjct: 119 VSDHPDVQALCRRFGKPLVSTSANLSGE 146


>gi|298484630|ref|ZP_07002734.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160854|gb|EFI01871.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 185

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MASSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164


>gi|330983264|gb|EGH81367.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 189

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 8/165 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 28  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 87

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 88  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 143

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           +E  G PL   S    G     +  + +   +  ++ LIIDGGI 
Sbjct: 144 LEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIG 188


>gi|213968422|ref|ZP_03396565.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301384290|ref|ZP_07232708.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060148|ref|ZP_07251689.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302130421|ref|ZP_07256411.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926710|gb|EEB60262.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|330876383|gb|EGH10532.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965119|gb|EGH65379.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 185

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164


>gi|66043293|ref|YP_233134.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
 gi|302186431|ref|ZP_07263104.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae 642]
 gi|75504059|sp|Q500S6|RIMN_PSEU2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|63254000|gb|AAY35096.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
 gi|330937247|gb|EGH41263.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330970346|gb|EGH70412.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330976425|gb|EGH76481.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 185

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164


>gi|332993793|gb|AEF03848.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas sp. SN2]
          Length = 206

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +ACE +  G  +  PT++ Y +     +  A+ +L  I+     +       D+S + 
Sbjct: 17  LNQACELIREGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRDIGKDHNFTLMCRDMSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD  +    K   PG  T VL   +T ++   L     KT   RVP       L+E
Sbjct: 77  IYAKVDNTAFRQIKNNTPGSYTFVLK--ATREVPKRLQNPKRKTIGIRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G PL   S    G     +   ++  ++ K++ +II GG   +G + T V    E   
Sbjct: 135 TLGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGVIIHGGY--LGEQPTTVIDLSEDTP 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 VIMRRG 198


>gi|218659203|ref|ZP_03515133.1| Sua5/YciO/YrdC family protein [Rhizobium etli IE4771]
          Length = 127

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           +A PSANRSG+++ T    ++   +   I  I++  I   GLESTI+++       ILR 
Sbjct: 1   MAAPSANRSGKVTSTRFVEVVRQ-LDGRISGIVEEDICDHGLESTILSLVGSPI--ILRH 57

Query: 195 GGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           G +  E L+  +       +DE + PQ   +PG LKSHYAP + V++           + 
Sbjct: 58  GSVPREALEALLGP-----IDEDTGPQKVSAPGQLKSHYAPEAAVQMNVDRPAANMVWVG 112

Query: 252 FG 253
           FG
Sbjct: 113 FG 114


>gi|145635047|ref|ZP_01790753.1| putative translation factor, SUA5 [Haemophilus influenzae PittAA]
 gi|145267655|gb|EDK07653.1| putative translation factor, SUA5 [Haemophilus influenzae PittAA]
          Length = 207

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIIAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A+V+ ++  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYATVNNIAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P+   + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEELPVILREG 199


>gi|237801643|ref|ZP_04590104.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024502|gb|EGI04558.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 185

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164


>gi|71735048|ref|YP_272338.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485581|ref|ZP_05639622.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289647923|ref|ZP_06479266.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|123638999|sp|Q48QH8|RIMN_PSE14 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|71555601|gb|AAZ34812.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326685|gb|EFW82730.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331341|gb|EFW87284.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867904|gb|EGH02613.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330890229|gb|EGH22890.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330985720|gb|EGH83823.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011869|gb|EGH91925.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 185

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164


>gi|332705341|ref|ZP_08425419.1| putative translation factor SUA5 [Lyngbya majuscula 3L]
 gi|332355701|gb|EGJ35163.1| putative translation factor SUA5 [Lyngbya majuscula 3L]
          Length = 201

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 16/185 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----ISMVKKHASVDPLS 80
           ++ PT+TV  LAV    P     ++E K+RP   PLI   +        V+  ++   + 
Sbjct: 19  VSFPTDTVPALAV---LPHKSELVFEAKRRPQDKPLILMGASPKSLWPFVQGTSAQRSIW 75

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
            H+A  +WPG LTLV   L  +D  P  ++ ++  T   RVP       I +   PLA  
Sbjct: 76  EHMAVKYWPGALTLV---LPASDKVPTVMNPSDPTTIGVRVPASRIAIAILSKTGPLATT 132

Query: 139 SANRSGQISITNVK--HILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILRPG 195
           SAN SG+  +  +    +    +    P  ++     KIG+ ST+          ILR G
Sbjct: 133 SANYSGEPPLQTMAAVEVQFPEVLTLQPAELEAIKPDKIGVPSTVAK-WTSSGWEILRAG 191

Query: 196 GLEIE 200
           G+E++
Sbjct: 192 GIELD 196


>gi|297180818|gb|ADI17024.1| putative translation factor (sua5) [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 197

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L  G  IA PTE V+G+  D  +  AI  L  +K+R     LI   S +  + 
Sbjct: 16  VEQCVEALRRGEVIAYPTEGVFGVGCDPDDSRAIEALLAVKERRKAKGLILIASSLEQLN 75

Query: 72  KHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  L   +    K  WPGP+T V+       +    +    T   RV      + L
Sbjct: 76  GYIDMSQLPDSVKEQVKASWPGPVTWVMP--KGEKVTSWVSGQFDTVAVRVSDHPDVQAL 133

Query: 128 IETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDG 169
            + +G P+   SAN +G+   +S+ +V+  LS    + +  + DG
Sbjct: 134 CQAFGKPITSTSANLAGEPPCMSVADVELHLS----ERVKTVFDG 174


>gi|292493439|ref|YP_003528878.1| SUA5/yciO/yrdC domain protein [Nitrosococcus halophilus Nc4]
 gi|291582034|gb|ADE16491.1| SUA5/yciO/yrdC domain protein [Nitrosococcus halophilus Nc4]
          Length = 186

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 9/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M    S  +R A   +  G  +A PTE V+GL  D     A+ R+ ++K R     LI  
Sbjct: 1   MRSCPSWPVRLAARMIHGGGVVAYPTEGVFGLGCDPLQGAAVERILKLKGRSVDKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHL-AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +D + ++ +  + PL+  + A+L   WPGP+T +L   +  D+         T   RV 
Sbjct: 61  AADFAQLQSY--LLPLTAQIRARLEGTWPGPVTWLLP--ARADVPRWLRGRHDTLAVRVT 116

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  L +  G  +   SANR+G+        +   S+   I  I+ G I +    S 
Sbjct: 117 AHPLAACLCQRVGSAIVSTSANRAGRPPARTTLQV-RRSLGAGIDYILPGAIGRRAGPSE 175

Query: 180 IVNVQCEKKVR 190
           I + +  +++R
Sbjct: 176 IRDGRTGQRIR 186


>gi|185178792|ref|ZP_02964588.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024454|ref|ZP_02997105.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518436|ref|ZP_03003925.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225551267|ref|ZP_03772213.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184209412|gb|EDU06455.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018748|gb|EDU56788.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998149|gb|EDU67246.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225379082|gb|EEH01447.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 186

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 35/213 (16%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  IT+ NA+  A   L A   + IPT+T+ GL   +++      +YEIK+R     +
Sbjct: 1   MKIYRITNLNAIYDA---LVANKCVLIPTDTIIGLLAKNQDV-----IYEIKRRDRNKKI 52

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +  V+D  ++     +         LFWPG +T++ + +S                +R+P
Sbjct: 53  VRFVADYKLL---GDLTVEQEQFLDLFWPGSVTVIKNGVS----------------YRMP 93

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 KLI+  G PL   SAN SG+  + N    +         LI      +IG+ ST
Sbjct: 94  NSPHILKLIQKLG-PLYCSSANISGEEPVKNHNEAI-FKFGANSKLIYVEAQQQIGVPST 151

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212
           IV++   + VR     G  IE +   I  EL+Y
Sbjct: 152 IVDIDKWEYVR----RGANIEMVDMFIK-ELKY 179


>gi|53803092|ref|YP_115232.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str.
          Bath]
 gi|81680872|sp|Q603G8|RIMN_METCA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|53756853|gb|AAU91144.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str.
          Bath]
          Length = 186

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 4  MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
          M       LR A   L  G  +A PTE VYGL  D  N  A+R+L  +K+R  +  LI  
Sbjct: 1  MGWISGFRLRLAANALRNGRIVAYPTEAVYGLGCDPFNEDAVRKLLALKRRSQIKGLILI 60

Query: 64 VSDISMVKKHASVD--PLSLHLAKLFWPGPLTLVL 96
           +D+  V+    +   PL   + +  WPGP T ++
Sbjct: 61 AADVEAVESLVDLARVPLGAEV-RAGWPGPTTWLI 94


>gi|326924468|ref|XP_003208449.1| PREDICTED: hypothetical protein LOC100546811 [Meleagris gallopavo]
          Length = 856

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 15/188 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  + L  G    IPT+TVY L      P A+ + +  K++    P+   +S + 
Sbjct: 593 ASSVKRIADILKNGGTCGIPTDTVYVLVAACNRPDAVEKAHRSKQQAQERPMSLWISSLK 652

Query: 69  MVK--KHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFRVP 120
            ++  KH    PL        WP P++LV+      D L   D         ++   R+P
Sbjct: 653 QLEPAKHL-FSPLLWDFMDAAWPSPISLVIPRGKWVDFLGMKD-SAKYVGTPQSVAIRIP 710

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C  T  LI+  G P+ + SAN +G+   T+   +  + +  ++  ++  G S   + ST
Sbjct: 711 DCSVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCDGPSPENIAST 768

Query: 180 IVNVQCEK 187
           +V+  C K
Sbjct: 769 VVD--CTK 774


>gi|238060788|ref|ZP_04605497.1| translation factor SUA5 [Micromonospora sp. ATCC 39149]
 gi|237882599|gb|EEP71427.1| translation factor SUA5 [Micromonospora sp. ATCC 39149]
          Length = 221

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 5/203 (2%)

Query: 5   SITDSN-ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           S+ D +  +  A E +  G  + +PT+TVYG+  D+  P A++ L + K      P +  
Sbjct: 14  SLADRDRGIAAAIEAVKNGELVVLPTDTVYGIGADAFTPYAVKALSDAKGGTRQAPPVLI 73

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            S  ++     ++   +  L + FWPG LT+V++   +  +      +  T   R+P   
Sbjct: 74  GSRHTLDGLVFTLPRSARDLVEAFWPGALTIVVE--HSPSLSWDLGDDSGTVAVRMPLHP 131

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               +     P+A+ SAN+ GQ +    +      +   +   ++ G     + STIV++
Sbjct: 132 VALEVLRETGPMAVASANKVGQPAAVTAEAA-REQLGYTVRAYLEAGPCPDPVPSTIVDL 190

Query: 184 QCEKKVRILRPGGLEIETLKRAI 206
             E   R+LR G + +E L+  +
Sbjct: 191 TGEVP-RLLRAGAIPVEKLRDVV 212


>gi|300776648|ref|ZP_07086506.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
           35910]
 gi|300502158|gb|EFK33298.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 182

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 25/189 (13%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L +G  I  PT+T++G+  D+ N  A+ +++EIKKR     +I  V     ++    V
Sbjct: 6   EILKSGGTILYPTDTIWGIGCDATNIEAVNKIFEIKKREKNKSMIILVESEKRLQDLVDV 65

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP------LSTANLKTACFRVPCGFTKKLIET 130
             ++  +  L    P+T+V +       +P      L   +       V   F KKLI  
Sbjct: 66  PEMAWEIIDLS-EKPVTIVYE-------NPRGLPKELLAEDGSIGIRLVKNDFCKKLITK 117

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIVNVQ 184
              PL   SAN SG+ S      +  S I +E+  ++D  + +   +      S+++ + 
Sbjct: 118 LNRPLVSTSANFSGEKS-----PLKFSDISQEMIDLVDYAVEEDREKVSKYSGSSVIKIW 172

Query: 185 CEKKVRILR 193
            + ++++LR
Sbjct: 173 NDNRIKVLR 181


>gi|300728246|ref|ZP_07061614.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bryantii B14]
 gi|299774481|gb|EFI71105.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bryantii B14]
          Length = 192

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T    ++ A   +  G  I  PT+TV+G+  D+ N  A+ ++Y+IKKR     LIC V 
Sbjct: 1   MTQEEDIKNAVAVMRKGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           SD  + +    +  ++  L +       P T++LD  +   +     A   +   R+   
Sbjct: 61  SDNRLQRYFRDIPNVAWDLFESISENTKPTTVILD--NANGVASNLVAEDGSLAVRITKE 118

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
            F+ +L   +  P+   SAN SGQ + +N + I
Sbjct: 119 KFSHELCYRFQKPIVSTSANISGQPAASNYRDI 151


>gi|295133073|ref|YP_003583749.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87]
 gi|294981088|gb|ADF51553.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87]
          Length = 206

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 17/211 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54
           +I+ I + N     + K  + L  G  +  PT+TVYGL  D  N +A+ ++ +IK     
Sbjct: 3   EIIRIYNENPNPREITKVVKTLRNGGLVIYPTDTVYGLGCDITNNSALEKIAQIKGVKLE 62

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
            A    ICH  D+S +  +   +D  +  + K   PGP T +   L   +  P      K
Sbjct: 63  KANFSFICH--DLSNLSDYVKQIDTSTFKILKRCLPGPYTFI---LPGNNNLPTVFKKKK 117

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGI 171
           T   RVP     + ++   G+P+   S     + I  T    ++       + ++IDGG 
Sbjct: 118 TVGIRVPDNNICRAIVAELGNPIVSTSIRDEDEVIEYTTDPELIQEKWDNLVDIVIDGGY 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
               + ST++++  ++   ++R G   +E +
Sbjct: 178 GD-NIPSTVIDLTTDQP-EVVREGKGSLEIM 206


>gi|285019625|ref|YP_003377336.1| translation factor (sua5) protein [Xanthomonas albilineans GPE
           PC73]
 gi|283474843|emb|CBA17342.1| putative translation factor (sua5) protein [Xanthomonas
           albilineans]
          Length = 186

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +A   L  G  IA PTE V+GL  D  +  A+ RL  IK+RP    LI   +++  +
Sbjct: 5   SLSQAVTALRQGGIIAYPTEAVWGLGCDPYDAAAVNRLLRIKQRPVEKGLIVVAAELDAL 64

Query: 71  K---KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                 +++ P  L      WPGP T +L   +T    P  T        R+        
Sbjct: 65  HPLLDLSALPPERLAAVLASWPGPHTWILP--ATAQAPPWITGTHNGIAVRISAHPLVTA 122

Query: 127 LIETYGHPLAIPSANRSGQ 145
           L   +   L   SANR G+
Sbjct: 123 LCRHWAGALVSTSANRGGE 141


>gi|302539279|ref|ZP_07291621.1| Sua5/YciO/YrdC family protein [Streptomyces sp. C]
 gi|302448174|gb|EFL19990.1| Sua5/YciO/YrdC family protein [Streptomyces sp. C]
          Length = 215

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 12/172 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           + +PT   Y +  D+ NP A + + E K+RP   PL   + D +  +      P +  LA
Sbjct: 22  VVVPTARWYMICADAANPDAYKAILEGKQRPKNKPLALVIPDQNRARDLLHFTPDAERLA 81

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
             FWPG L L L      D    +           P G    L       LA  + N SG
Sbjct: 82  AAFWPGDLALFLPWREPADAARYTVVGSPALTTHAP-GPLGDLARAVPGLLAATTVNVSG 140

Query: 145 Q---------ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
                     I++  V+  L+ +      L++DGG+       TIV+   ++
Sbjct: 141 DAGPDDRGPAITLAEVEEFLTEAGLDA--LVMDGGVCPAANHLTIVDCAGDQ 190


>gi|91070122|gb|ABE11046.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone ASNC729]
          Length = 193

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 12/194 (6%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----IS 68
           + A + L +GLPI  PT+T+  +    +   AI   Y  K+R    PLI   S+    I 
Sbjct: 7   KSALKTLKSGLPIIFPTDTLPAIGCLPKFSNAI---YTFKRRDRDKPLILMGSEPKQLID 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            V + A  D    ++A  +WPG LT+V+   ++     + T+N  T   RVP  +  + +
Sbjct: 64  YVHESAKED--YENIASKYWPGALTMVIP--ASEKQTKILTSNDLTLGLRVPNLYMAQSL 119

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                PL   SAN SG    T V+ I       +I   I  G  + G  STI+  +    
Sbjct: 120 MKETGPLLTSSANISGLKGSTTVEDIALDFPSLKILGPIPWG-KRSGKASTIIFWKKSGD 178

Query: 189 VRILRPGGLEIETL 202
            R+LR G + +  L
Sbjct: 179 WRLLREGEVLVREL 192


>gi|13358171|ref|NP_078455.1| hypothetical protein UU005m [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762116|ref|YP_001752085.1| hypothetical protein UPA3_0005 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920287|ref|ZP_02931643.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|183508513|ref|ZP_02958040.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701710|ref|ZP_02971402.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168827693|gb|ACA32955.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902700|gb|EDT48989.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182675949|gb|EDT87854.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186700976|gb|EDU19258.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 184

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 30/191 (15%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  IT+ N +  A   L A   + IPT+T+ GL   +++      +YEIK+R     +
Sbjct: 1   MKIYRITNLNVIYDA---LMANKCVLIPTDTIIGLLAKNQDV-----IYEIKQRDRNKKI 52

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I  V+D  ++     +         LFWPG +T++ + +S                +R+P
Sbjct: 53  IRFVADYKLL---GDLTVEQKQFLDLFWPGSVTIIKNGIS----------------YRMP 93

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              +  KLI+  G PL   SAN SG+  I N    +         LI      +IG+ ST
Sbjct: 94  NSPYILKLIQKLG-PLYCSSANISGEEPIKNHNEAI-FKFGANSKLIYVEAQQQIGVPST 151

Query: 180 IVNVQCEKKVR 190
           IV++   + +R
Sbjct: 152 IVDIDKWEYIR 162


>gi|118089557|ref|XP_426272.2| PREDICTED: similar to putative transmembrane protein TA-2 [Gallus
           gallus]
          Length = 818

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 15/188 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  + L  G    IPT+TVY L      P A+ + +  K++    P+   +S + 
Sbjct: 555 ASSVKRIADILKNGGTCGIPTDTVYVLVAACNRPDAVEKAHRSKRQAQERPMSLWISSLK 614

Query: 69  MVK--KHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFRVP 120
            ++  KH    PL        WP P++LV+      D L   D         ++   R+P
Sbjct: 615 QLEPAKHL-FSPLLWDFMDAAWPSPISLVIPRGEWVDFLGMKD-SAKYVGTPQSVAIRIP 672

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C  T  LI+  G P+ + SAN +G+   T+   +  + +  ++  ++  G S   + ST
Sbjct: 673 DCSVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCDGPSPENIAST 730

Query: 180 IVNVQCEK 187
           +V+  C K
Sbjct: 731 VVD--CTK 736


>gi|254382317|ref|ZP_04997677.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. Mg1]
 gi|194341222|gb|EDX22188.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. Mg1]
          Length = 215

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 31/211 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+T+YG+  D+ +  A+  L   K R    P    +   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTLYGIGADAFSAEAVGDLLAAKGRGRNMPTPVLIGSPNT 74

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFR 118
           +  H  V   S     L   FWPG LTLV         DL  T            T   R
Sbjct: 75  L--HGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLAWDLGETR----------GTVAVR 122

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIG 175
           +P       + T   P+A+ SAN SG  +  +    + +L  S+     + +DGG +   
Sbjct: 123 MPLHPVAIELLTEVGPMAVSSANLSGHPAPEDCDAAREMLGDSVS----VYLDGGPTPGI 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
             S+IV+V  +  V +LR G L  E L+  +
Sbjct: 179 QPSSIVDVTGKVPV-LLREGALTAEQLREVV 208


>gi|15602527|ref|NP_245599.1| hypothetical protein PM0662 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720939|gb|AAK02746.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 207

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 9/188 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L AG  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRAGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V+ ++  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYSLVNNMAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALALLS 134

Query: 130 TYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEK 187
           T G P+   S    G+ ++T      +   + K++ LII GG   +G E +T+V++  + 
Sbjct: 135 TLGEPILSCSLMLPGEENVTQSDPEEIRDRLEKQVDLIIHGGY--LGAEPTTVVDLTNDT 192

Query: 188 KVRILRPG 195
            + I+R G
Sbjct: 193 PI-IIREG 199


>gi|238783201|ref|ZP_04627227.1| Ribosomal modification protein RimN [Yersinia bercovieri ATCC
           43970]
 gi|238715997|gb|EEQ07983.1| Ribosomal modification protein RimN [Yersinia bercovieri ATCC
           43970]
          Length = 188

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K +     LS L  
Sbjct: 21  IAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYIDDSTLSDLQR 80

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
             +F  WPG +T V+   + T      T +  +   RV      ++L   YG PL   SA
Sbjct: 81  ETIFSCWPGAVTWVIPARAET--PRWLTGSFDSLAVRVSDHPLVQQLCLQYGKPLVSTSA 138

Query: 141 NRSGQ 145
           N SG+
Sbjct: 139 NLSGR 143


>gi|295095682|emb|CBK84772.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 206

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  ++ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGSMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+   S    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 TLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGY--LGQQPTTVVDLTEDAP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|120612352|ref|YP_972030.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax citrulli AAC00-1]
 gi|120590816|gb|ABM34256.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax citrulli AAC00-1]
          Length = 211

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A+PT++ Y L     +  A+ RL  I++    + L     D+S V  +A VD    
Sbjct: 27  GAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQY 86

Query: 82  HLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPS 139
            L K   PGP T +LD  +T ++   +S    KT   RVP     + L+E +G PL   +
Sbjct: 87  RLVKQATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 144

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               G+    N    + +    +I  ++D G     LE T V
Sbjct: 145 LIPPGETEPMNDPSEIRARFEHQIDAVVDAGACP--LEPTTV 184


>gi|330901111|gb|EGH32530.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 185

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVNSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           ++          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NMRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQIDGVLGGSL 164


>gi|313675808|ref|YP_004053804.1| translation factor sua5 [Marivirga tractuosa DSM 4126]
 gi|312942506|gb|ADR21696.1| translation factor SUA5 [Marivirga tractuosa DSM 4126]
          Length = 207

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 12/198 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           D   +++  + L  G  I  PT+T+YGL  D  N  AI +L  +K  +P    L     D
Sbjct: 14  DPRKIQQIVDLLKDGAVIIYPTDTIYGLGCDLTNRKAIDKLCWVKDIKPGKINLSFICED 73

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           +S +  +  ++   +  L K   PGP T +L   + +++  +  AN KT   R+P     
Sbjct: 74  MSHISDYVKNLSTPTFKLMKKNLPGPFTFILP--ANSNVPKIVNANKKTVGIRIPNNNIP 131

Query: 125 KKLIETYGHPLAIPSANRSGQI--SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             L++  G+PL   S   +  I    T+ + I   S    + ++IDGG       ST+++
Sbjct: 132 IALVKALGNPLITTSIKDNDDIVEYPTDPEEIY-ESFKNLVDVVIDGGYGN-NNPSTVID 189

Query: 183 VQCEKK-VRILRPGGLEI 199
             C K+   I+R G  EI
Sbjct: 190 --CTKEPAEIVREGLGEI 205


>gi|146300671|ref|YP_001195262.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae
           UW101]
 gi|146155089|gb|ABQ05943.1| translation factor SUA5 [Flavobacterium johnsoniae UW101]
          Length = 206

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 13/198 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDI 67
           A+ K  + L  G  +  PT+TVYGL  D  N  A+ ++ +IK      A    ICH  D+
Sbjct: 16  AIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVKLEKANFSFICH--DL 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S +  +   +D  +  + K   PGP T +   L   +  P       T   RVP      
Sbjct: 74  SNLSDYVRQIDTSTFKILKRALPGPYTFI---LPGNNNLPKEFKKKTTVGIRVPDNNIVL 130

Query: 126 KLIETYGHPLAIPSA-NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++   G+P+   S  +    I  T    ++       + ++IDGG     + STI+++ 
Sbjct: 131 EIVRQLGNPIVSTSIRDEDDVIEYTTDPELIFEKWQNLVDMVIDGGYGD-NVGSTIIDL- 188

Query: 185 CEKKVRILRPGGLEIETL 202
            E +  ++R G  +I+ L
Sbjct: 189 SEHEPIVVREGKGDIDIL 206


>gi|148244943|ref|YP_001219637.1| Sua5 family translation factor [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326770|dbj|BAF61913.1| translation factor, Sua5/YciO/YrdC/YwlC family [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 204

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 8/190 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L  G  I  PT++ Y L     N   + R+  I+     +     + D++ + 
Sbjct: 17  LEQVADELRRGAVIVYPTDSGYALGATLGNKNGLERIRCIRNLSKQHYFTLMMRDLAHIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
           ++A +D +S  L K   PG  T VL    T D+ + L  A  KT  FRV   G  + L++
Sbjct: 77  EYAKLDNISFRLLKRILPGSYTFVLQ--GTRDVPNRLLHAKKKTIGFRVSNHGLVQALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+ I ++         ++  +   S+ K + +IIDGG     LE T V       +
Sbjct: 135 VLNEPI-INTSLIIKDCEFFDIDDVY-DSLEKRVDVIIDGGYCP--LEPTTVIDLSLSSI 190

Query: 190 RILRPGGLEI 199
            I+R G  +I
Sbjct: 191 NIIRQGAGDI 200


>gi|126662056|ref|ZP_01733055.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium BAL38]
 gi|126625435|gb|EAZ96124.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium BAL38]
          Length = 188

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 5/181 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-H 73
           A E +  G  I  PT+TV+G+  D+ N  AI+++Y +K+R     +I  ++   M+    
Sbjct: 10  AFEIIKNGGIILYPTDTVWGIGCDATNEDAIKKIYALKQREESKSMIVLLNGERMMYNVF 69

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
             +  ++  +  L    P TL+LD       + ++  N   A   V   F  KL+E    
Sbjct: 70  KDIPEVAWQILDLS-ERPTTLILDKPRNVAKNIIAEDN-TLAVRMVTEPFCFKLMERMKK 127

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRIL 192
           PL   SAN SG  +    K I +  I K +  +++    K+    STI+ +  + +V+++
Sbjct: 128 PLVSTSANVSGMFTPKTFKEI-TPEIIKGVDYVVNLHHDKVCKNPSTIIKLGLDSQVKVI 186

Query: 193 R 193
           R
Sbjct: 187 R 187


>gi|145633071|ref|ZP_01788803.1| hypothetical protein CGSHi3655_05899 [Haemophilus influenzae 3655]
 gi|144986297|gb|EDJ92876.1| hypothetical protein CGSHi3655_05899 [Haemophilus influenzae 3655]
          Length = 207

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V+  +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P    + Q     ++  L      +I LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPGEEHTTQSDPEEIRDRLE----HQIDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|86133170|ref|ZP_01051752.1| YrdC protein [Polaribacter sp. MED152]
 gi|85820033|gb|EAQ41180.1| YrdC protein [Polaribacter sp. MED152]
          Length = 206

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 86/197 (43%), Gaps = 13/197 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68
           ++KA + L  G  I  PT+TVYGL  D  N  A+ ++  IK      A    +C+  D+S
Sbjct: 17  IQKAVKVLKNGGLIIYPTDTVYGLGCDITNTKALEKIALIKGIKLDKANFSFVCN--DLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +  +   +D  +  L K   PGP T +   L  ++  P      KT   R+P     + 
Sbjct: 75  HLSDYVKQLDSPTFKLLKRALPGPYTFI---LPGSNNLPKVFKKRKTVGIRIPDNNIART 131

Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L+E  G+P+   S      I   T    ++       + L+IDGG       STI+++  
Sbjct: 132 LVEALGNPIVSSSIRDDDDILEYTTDPELIYEKWNNLVDLVIDGGYGD-NQASTIIDL-T 189

Query: 186 EKKVRILRPGGLEIETL 202
           +    ++R G   ++ L
Sbjct: 190 DNVPEVIREGKGSLDVL 206


>gi|94310010|ref|YP_583220.1| Sua5/YciO/YrdC/YwlC [Cupriavidus metallidurans CH34]
 gi|93353862|gb|ABF07951.1| putative translation factor (SUA5) [Cupriavidus metallidurans CH34]
          Length = 215

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 12/194 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAI---RRLYEIKKRPAMNPLICHVSDIS 68
           +++A + +  G  IA+PT++ Y LA    +  A+   RRL EI ++  +  L+C  SD+S
Sbjct: 17  VKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREIDEKHHLT-LMC--SDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126
            +   A VD       K   PGP   +L+  +T ++   LS    KT   RVP       
Sbjct: 74  ELGNFARVDNRQYRWIKGATPGPYVFILE--ATKEVPRRLSHPARKTIGVRVPEHPIPLA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PL   +    G  +  N    + + + K + L+IDGG +     +T++++   
Sbjct: 132 LVAELGQPLISATLQLPGDDAPMNDPAEIRARLEKRLDLVIDGGPAP-AQPTTVIDLTSG 190

Query: 187 KKVRILRPGGLEIE 200
           + V ++R G  ++E
Sbjct: 191 EPV-LVRAGRGDVE 203


>gi|148546653|ref|YP_001266755.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida F1]
 gi|148510711|gb|ABQ77571.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida F1]
          Length = 221

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 5/178 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y L     + +AI R+  ++     +       D+S + 
Sbjct: 29  IKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKTHNFTLMCCDMSQLG 88

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVP-CGFTKKLIE 129
            +A VD  +  L K   PGP T +L+   T ++  L   +  +T   RVP    T  L+ 
Sbjct: 89  LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHDKRRTIGLRVPDHAITLALLA 146

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             G PL   S    G        + +   +  ++ L+IDGG   +   STI+++  ++
Sbjct: 147 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHQVDLVIDGGFGDLK-ASTIIDLSGDE 203


>gi|282878540|ref|ZP_06287321.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccalis ATCC 35310]
 gi|281299331|gb|EFA91719.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccalis ATCC 35310]
          Length = 189

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A E +  G  I  PT+TV+G+  D+ N  A+ ++Y+IKKR     LIC V   + ++
Sbjct: 7   IKNAIEVMKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVDSDARLQ 66

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++    P ++  L  +    P T++LD     ++ P   A   +   R+    F+ +L  
Sbjct: 67  RYVRQVPNVAWDLLDVA-VKPTTIILD--GAINLAPNLIAEDGSIALRITKEPFSHELCY 123

Query: 130 TYGHPLAIPSANRSGQISITN 150
            +   L   SAN SG+ +  N
Sbjct: 124 RFQKALVSTSANVSGEPAAAN 144


>gi|289209438|ref|YP_003461504.1| SUA5/yciO/yrdC domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945069|gb|ADC72768.1| SUA5/yciO/yrdC domain protein [Thioalkalivibrio sp. K90mix]
          Length = 197

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 61/136 (44%), Gaps = 23/136 (16%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D G+ +A PTE V+GL     +P  I R+ EIK RPA   LI  V+D         +D L
Sbjct: 22  DGGV-VAYPTEAVFGLGCRPDDPRTIDRILEIKGRPATKGLIV-VTD--------RLDRL 71

Query: 80  SLHLAKL----------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
           +  LA L           WPGP T +L +  T    PL      +   RV     T+ L 
Sbjct: 72  APWLAPLPAERRAEIDASWPGPTTWLLPV--TDACPPLLRGEHDSLAVRVTAHPETRALC 129

Query: 129 ETYGHPLAIPSANRSG 144
              G PL   SANR+G
Sbjct: 130 AAAGSPLVSTSANRAG 145


>gi|258404937|ref|YP_003197679.1| SUA5/yciO/yrdC domain-containing protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257797164|gb|ACV68101.1| SUA5/yciO/yrdC domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 219

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 26/197 (13%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD---ISMVKKHASVDPLSLHLA 84
           PTET++ +  D+ NP    ++  IK RP   PL   +     ++MV    S D     L 
Sbjct: 36  PTETLFAVGGDALNPAVGEQVQAIKARPEGKPLPVLLGAPEMLAMVTAWQSRD--LQRLT 93

Query: 85  KLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-----GHPL 135
             FWPGPL+L++     L +    H   T      C R    +T     ++     G PL
Sbjct: 94  NAFWPGPLSLLVPARPGLPAAIQDHAGWT------CVR----WTSHRDASWLSRQCGQPL 143

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKVRILRP 194
              SANRSG      V   L   + + +  +  G  S   GL ST+V +     + +LR 
Sbjct: 144 IATSANRSG-APPAAVAEQLDPEMIRSVNGVWLGHSSPDGGLPSTLVRILSGGVLEVLRQ 202

Query: 195 GGLEIETLKRAISVELE 211
           G ++   L+ A  V  E
Sbjct: 203 GAVDSRALEGAGWVVRE 219


>gi|123967880|ref|YP_001008738.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           AS9601]
 gi|123197990|gb|ABM69631.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           AS9601]
          Length = 193

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 20/198 (10%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC----HVSDIS 68
           + A + L +GLPI  PT+T+  +      P     +YE KKR    PLI     H   I 
Sbjct: 7   KSALKTLKSGLPIIFPTDTLPAIGC---LPKFSNIIYEFKKRDRGKPLILMGSEHKQLID 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            V + A  D    ++A  +WPG LT+V+   ++     + T+N  T   R+P  +  K +
Sbjct: 64  YVHESAKED--YENIASKYWPGALTMVVP--ASEKQTTILTSNDLTLGLRIPNSYMAKSL 119

Query: 129 ETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGLESTIVNVQ 184
                PL   SAN SG      V+ I     S  I   IP        + G  STI+  +
Sbjct: 120 MRETGPLLTSSANISGFKGSITVEGIALDFPSVKILGPIPW-----EKRSGKASTIIFWK 174

Query: 185 CEKKVRILRPGGLEIETL 202
                R++R G + +  L
Sbjct: 175 KSGDWRLIREGEVLVREL 192


>gi|300723350|ref|YP_003712653.1| protein yciO [Xenorhabdus nematophila ATCC 19061]
 gi|297629870|emb|CBJ90488.1| Protein yciO [Xenorhabdus nematophila ATCC 19061]
          Length = 206

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ E L  G  +  PT++ Y +     N  A+ R+  I++    +       D+S + 
Sbjct: 17  IEQSAEVLKKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLEGRHNFTLMCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP      +L+E
Sbjct: 77  TYAHVDNQAFRLIKNNTPGNYTFILQ--ATKEVPRRLMNEKRKTIGLRVPSNPIALELLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES-TIVNVQCEKK 188
             G PL   S    G     +    +  ++ K++ LII GG   +G +S T+V++  +  
Sbjct: 135 KMGEPLMSCSLILPGNDFAESDPEEIKETLGKQVDLIIHGGY--LGQQSTTVVDLTGDSP 192

Query: 189 VRILRPG 195
           V ILR G
Sbjct: 193 V-ILREG 198


>gi|16273118|ref|NP_439354.1| hypothetical protein HI1198 [Haemophilus influenzae Rd KW20]
 gi|145639282|ref|ZP_01794888.1| hypothetical protein CGSHiII_00989 [Haemophilus influenzae PittII]
 gi|260581102|ref|ZP_05848923.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|319776560|ref|YP_004139048.1| protein, putative translation factor SUA5 [Haemophilus influenzae
           F3047]
 gi|329124071|ref|ZP_08252618.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus aegyptius ATCC
           11116]
 gi|1175684|sp|P45103|Y1198_HAEIN RecName: Full=Uncharacterized protein HI_1198
 gi|1574127|gb|AAC22852.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|145271585|gb|EDK11496.1| hypothetical protein CGSHiII_00989 [Haemophilus influenzae PittII]
 gi|260092231|gb|EEW76173.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|309751159|gb|ADO81143.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
 gi|317451151|emb|CBY87384.1| conserved protein, putative translation factor SUA5 [Haemophilus
           influenzae F3047]
 gi|327467496|gb|EGF12994.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus aegyptius ATCC
           11116]
          Length = 207

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V+  +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P+   + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|319901221|ref|YP_004160949.1| translation factor SUA5 [Bacteroides helcogenes P 36-108]
 gi|319416252|gb|ADV43363.1| translation factor SUA5 [Bacteroides helcogenes P 36-108]
          Length = 204

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 11/189 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++    L+ G  I  PT+T+Y +   +    AI R+ ++K   P  N L     D+S +
Sbjct: 15  LQQIINLLNDGGIIIYPTDTMYAIGCHALKERAIERICQLKDIDPKKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A VD  +  L K   PG  T +L+   TT + P    N K    R+P     +++  
Sbjct: 75  SEYAKVDNNTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMPDSSIIREIAR 131

Query: 130 TYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
               P+   +   + S  I       +++      + LIIDGGI   G E + + V C  
Sbjct: 132 LLDAPIMTTTLPYDDSEDIEYATDPELINEKFGNTVDLIIDGGIG--GTEGSTI-VDCTN 188

Query: 188 -KVRILRPG 195
            +  I+R G
Sbjct: 189 GETEIVRQG 197


>gi|326318414|ref|YP_004236086.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375250|gb|ADX47519.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 211

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A+PT++ Y L     +  A+ RL  I++    + L     D+S V  +A VD    
Sbjct: 27  GAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQY 86

Query: 82  HLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPS 139
            L K   PGP T +LD  +T ++   +S    KT   RVP     + L+E +G PL   +
Sbjct: 87  RLVKQATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 144

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               G+    N    + +    +I  ++D G     LE T V
Sbjct: 145 LIPPGETEPMNDPAEIRARFEHQIDAVVDAGACP--LEPTTV 184


>gi|226329519|ref|ZP_03805037.1| hypothetical protein PROPEN_03428 [Proteus penneri ATCC 35198]
 gi|225202705|gb|EEG85059.1| hypothetical protein PROPEN_03428 [Proteus penneri ATCC 35198]
          Length = 189

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+G+  D  +  A+  L  +K+R     LI    +   +K +     L+    
Sbjct: 22  IAYPTEAVFGVGCDPDSEQAVMALLMLKQRSIEKGLILIADNYGQLKPYIDDSALTQTQR 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSA 140
            ++F  WPGP+T V+   STT      T    +   RV      K+L   YG PL   SA
Sbjct: 82  DRMFASWPGPVTWVIPAKSTT--PKWLTGKFDSLAVRVTDHSVVKELCLAYGKPLVSTSA 139

Query: 141 NRSG 144
           N SG
Sbjct: 140 NLSG 143


>gi|78185423|ref|YP_377858.1| hypothetical protein Syncc9902_1857 [Synechococcus sp. CC9902]
 gi|78169717|gb|ABB26814.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 202

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 62/144 (43%), Gaps = 37/144 (25%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI----------------C 62
           L A   + IPT+T+ GLAV  +N   I   + +K+RPA  PLI                C
Sbjct: 19  LQASEAVIIPTDTLPGLAVLPQNANTI---WTLKQRPADKPLILMGATVEALLEGVDSCC 75

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           H    +M  KH              WPG +TLVL       +  L+       C R+P C
Sbjct: 76  HDDAKTMATKH--------------WPGAITLVLPARGIY-VDYLNPGGSNIGC-RIPAC 119

Query: 122 GFTKKLIETYGHPLAIPSANRSGQ 145
             T+ L+   G PLA  SAN SGQ
Sbjct: 120 AITQNLLSISG-PLATSSANPSGQ 142


>gi|302869593|ref|YP_003838230.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315503945|ref|YP_004082832.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5]
 gi|302572452|gb|ADL48654.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315410564|gb|ADU08681.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5]
          Length = 214

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E +  G  + +PT+TVYG+  D+  P A++ L + K      P +   S  ++     
Sbjct: 18  AIEAVKNGELVVLPTDTVYGIGADAFTPYAVKALADTKGGARQAPPVLIGSRHTLDGLVF 77

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-----NLKTACFRVPCGFTKKLIE 129
           S+   +  L + FWPG LT+V++       H  S A     +  T   R+P       + 
Sbjct: 78  SLPGAARDLVEAFWPGALTIVVE-------HSPSLAWDLGDSSGTVAVRMPLHPVALEVL 130

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A+ SAN+ GQ +    +      +   +   ++ G +   + STIV++  +   
Sbjct: 131 RETGPMAVASANKIGQPAALTAEEA-RDQLGYGVRAYLEAGPAVDPVPSTIVDLTGDVP- 188

Query: 190 RILRPGGLEIETLKRAI 206
           R+LR G + +  L+  +
Sbjct: 189 RVLREGAVTLAKLREVV 205


>gi|28867414|ref|NP_790033.1| SUA5/yciO/yrdC family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|81732976|sp|Q88B46|RIMN_PSESM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|28850648|gb|AAO53728.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 185

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 14/166 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKLRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI 159
            R  C     LI T  +P   P+A    R  Q     +  +L  S+
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRVEQYFRGQINGVLGGSL 164


>gi|311746055|ref|ZP_07719840.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
 gi|126576272|gb|EAZ80550.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
          Length = 209

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 20/198 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LI 61
           D   +R+    L  G  +  PT+TVYGL  D  N  A+ R+  IK    +NP       +
Sbjct: 14  DPKKIREIAALLRDGAVVIYPTDTVYGLGCDITNTRAVERICRIK---GINPRKHNFSFV 70

Query: 62  CHVSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           C  +D+S +  +  V   P+   + K   PGP T +L+  + T +  +  +  KT   RV
Sbjct: 71  C--ADLSTISHYTRVITKPV-FKMMKKALPGPYTFILE--ANTQVPKILHSKKKTVGIRV 125

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           P     + L+E  G PL   S     ++   +    ++       + ++I GG  +  + 
Sbjct: 126 PDHKVPRMLVEELGQPLLSTSIRDEDEVLEYSTDPELIFEKYEHLVDVVIHGGFGQ-NIG 184

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+++     ++ I+R G
Sbjct: 185 STVLDCTGH-EMEIIREG 201


>gi|145631248|ref|ZP_01787021.1| hypothetical protein CGSHi22421_04153 [Haemophilus influenzae
           R3021]
 gi|145637047|ref|ZP_01792710.1| hypothetical protein CGSHiHH_02268 [Haemophilus influenzae PittHH]
 gi|148828348|ref|YP_001293101.1| hypothetical protein CGSHiGG_09710 [Haemophilus influenzae PittGG]
 gi|144983175|gb|EDJ90670.1| hypothetical protein CGSHi22421_04153 [Haemophilus influenzae
           R3021]
 gi|145269701|gb|EDK09641.1| hypothetical protein CGSHiHH_02268 [Haemophilus influenzae PittHH]
 gi|148719590|gb|ABR00718.1| hypothetical protein CGSHiGG_09710 [Haemophilus influenzae PittGG]
          Length = 207

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V+  +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P+   + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|70728990|ref|YP_258724.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5]
 gi|68343289|gb|AAY90895.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5]
          Length = 217

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 9/176 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y +A    +  AI R+  +++    +      SD+S + 
Sbjct: 25  IKQAVEIIRGGGVVIYPTDSSYAVACQMGDKGAIERVRRLRQLDDKHNFALICSDLSQLG 84

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A +D  +  L K   PGP T +L+         +HP      +T   RVP       L
Sbjct: 85  LFAKIDTGTFRLLKAHVPGPYTFILNATREVPRLLLHP----KRRTIGLRVPSNPIALAL 140

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +   G PL   S    G     +  + +   +  ++ LIIDGG       ST++N+
Sbjct: 141 LAELGEPLMSVSLIMPGDTEALSDPYEMRQLLEHQVDLIIDGGFGSTE-SSTVINL 195


>gi|54297353|ref|YP_123722.1| hypothetical protein lpp1398 [Legionella pneumophila str. Paris]
 gi|53751138|emb|CAH12549.1| hypothetical protein lpp1398 [Legionella pneumophila str. Paris]
          Length = 206

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 18/200 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           LRKA   ++ G  I  PT++ Y L     N +A   IRRL ++ K   M  L+C   D+S
Sbjct: 17  LRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMT-LVCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124
            +  +A V      L K F PG  T +L+         +HP      +T   RVP    T
Sbjct: 74  QLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHP----KRRTLGLRVPDNTIT 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
             L+E    PL   +    G  +  +    +   +  +I LIIDGG    G E +T+V++
Sbjct: 130 LSLLECLEAPLMSTTLILPGAQAPLSEPEAIKDLLGNQIDLIIDGG--NCGHEPTTVVDL 187

Query: 184 QCEKKVRILRPGGLEIETLK 203
             +  + I+R G  + E  K
Sbjct: 188 TGDYPI-IIREGKGDPEPFK 206


>gi|260854965|ref|YP_003228856.1| hypothetical protein ECO26_1832 [Escherichia coli O26:H11 str.
           11368]
 gi|257753614|dbj|BAI25116.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|323153301|gb|EFZ39559.1| yrdC domain protein [Escherichia coli EPECa14]
          Length = 206

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   + K++ LII GG   +G + T V    + K 
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQKPTTVIDLTDDKP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 VVVREG 198


>gi|167753477|ref|ZP_02425604.1| hypothetical protein ALIPUT_01751 [Alistipes putredinis DSM 17216]
 gi|167658102|gb|EDS02232.1| hypothetical protein ALIPUT_01751 [Alistipes putredinis DSM 17216]
          Length = 200

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 6/172 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PT++VY      R+  A+ RL  IK +      +   S +  +  +  VD     L 
Sbjct: 28  VIYPTDSVYAFGCSIRSAKAVERLRRIKGKDLTTFSVVFDS-LGQIADYCRVDNAQFRLL 86

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
           K   PGP T +LD  +++ +   +    +T   R+P     + ++E  G PL   S    
Sbjct: 87  KQNLPGPFTFLLD--ASSRMPHKALERRRTIGIRIPDNSIPRAIVERLGAPLLTSSVLDD 144

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            +        ++     +++ L+IDGG+    + +T+V++   +   ILR G
Sbjct: 145 EETEYMTDPELIHERYGRDVELVIDGGVGD-AVPTTVVDLTGGEP-EILREG 194


>gi|320534366|ref|ZP_08034852.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133408|gb|EFW25870.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 205

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 9/186 (4%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D GL +A PT++ Y LA    N   + R+  I++    +      +D   V   A V   
Sbjct: 26  DGGL-VAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFGQVGPLAIVGNN 84

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLIETYGHPLA 136
           +  L K   PGP T +L    T D+ P  T N K  T   R+P    T+ L+  +G P+ 
Sbjct: 85  AFRLIKRLTPGPWTFILK--GTKDV-PRMTLNPKKHTLGVRIPDHAITQSLVAEFGAPIL 141

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
             +  R GQ         +  S+   I ++I+G + + G  +T+V++  +    +LR G 
Sbjct: 142 SSTFIRPGQEEPETNGWEIQDSLGHLIDVVIEGPVGQ-GESTTVVDL-TDDVPEVLREGA 199

Query: 197 LEIETL 202
            +I  L
Sbjct: 200 GDISLL 205


>gi|289627012|ref|ZP_06459966.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 162

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---C 116
           +I          P L L      WPGP T ++   +LL    T IH   T  L+      
Sbjct: 61  NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSA 140
            R  C     LI T  +P   P+A
Sbjct: 119 VRELCALVGPLISTSANPAGRPAA 142


>gi|239993815|ref|ZP_04714339.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii ATCC
           27126]
          Length = 206

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +ACE +  G  +  PT++ Y +     +  A+ +L  I++    +       D+S + 
Sbjct: 17  ISQACELIREGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRQIDKDHNFTLMCRDMSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD  +    K   PG  T VL   +T ++   L     KT   RVP       L+E
Sbjct: 77  IYAKVDNTAFRQIKNNTPGRYTFVLK--ATREVPKRLQNPKRKTIGIRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +   ++  ++ K++ LII GG   IG + T V    E   
Sbjct: 135 ELGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGLIIHGGY--IGEQPTTVVDLSEDTP 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 VIVRHG 198


>gi|192361717|ref|YP_001982272.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107]
 gi|190687882|gb|ACE85560.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107]
          Length = 205

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  +  PT++ Y L     +  A+ R+  +++    +       D+S + 
Sbjct: 17  IQQAVDIIRKGGLVVYPTDSAYALGCHIGDKDALERIRTLRQLDKYHNFTLMCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A V+  +  L K   PG  T +L+  +T D+   L     KT   RVP       L+E
Sbjct: 77  TYARVNNQAFRLLKNHTPGAYTFILE--ATADVPRRLMHPKRKTIGLRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL   S    G+       + +  ++  ++ L+IDGG    GLE T V
Sbjct: 135 ELGEPLMTSSLLLPGEEYPMTDPYDIRETLEHQVDLVIDGGYC--GLEPTTV 184


>gi|52841673|ref|YP_095472.1| translation factor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628784|gb|AAU27525.1| translation factor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 221

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 18/200 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           LRKA   ++ G  I  PT++ Y L     N +A   IRRL ++ K   M  L+C   D+S
Sbjct: 32  LRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMT-LVCR--DLS 88

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124
            +  +A V      L K F PG  T +L+         +HP      +T   RVP    T
Sbjct: 89  QLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHP----KRRTLGLRVPDNTIT 144

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
             L+E    PL   +    G  +  +    +   +  +I LIIDGG    G E +T+V++
Sbjct: 145 LSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGG--NCGHEPTTVVDL 202

Query: 184 QCEKKVRILRPGGLEIETLK 203
             +  + I+R G  + E  K
Sbjct: 203 TGDYPI-IIREGKGDPEPFK 221


>gi|109899136|ref|YP_662391.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoalteromonas atlantica
           T6c]
 gi|109701417|gb|ABG41337.1| translation factor SUA5 [Pseudoalteromonas atlantica T6c]
          Length = 206

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++ACE +  G  +  PT++ Y +     + +A+ ++  I++    +       D+S + 
Sbjct: 17  IKQACELIHNGQVVVYPTDSGYSIGCHMDDKSALEQICRIRQIGKDHNFTLMCRDMSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
           ++A VD  +  + K   PGP T +L   +T ++   L     +T   RVP       L+E
Sbjct: 77  EYAQVDNAAFRMIKNNTPGPYTFILK--ATKEVPKRLQNPKRRTIGIRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +      I   +    +   + K++ LII GG   +G + T V    + + 
Sbjct: 135 ELGEPLMSTTLILPNAIVAESDPDEIRDKLEKQVGLIIHGGF--LGEQPTTVIDLSDGEP 192

Query: 190 RILRPGGLEI 199
            I+R G  ++
Sbjct: 193 TIIREGSGDV 202


>gi|254496473|ref|ZP_05109350.1| translation factor [Legionella drancourtii LLAP12]
 gi|254354329|gb|EET12987.1| translation factor [Legionella drancourtii LLAP12]
          Length = 214

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 18/192 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           LRKA   ++ G  I  PT++ Y L     N  A   IRRL ++ K   M  L+C   D+S
Sbjct: 25  LRKAATIIEDGGVIVYPTDSGYALGCSLGNKAALERIRRLRQLDKNHNMT-LVCR--DLS 81

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCGF-T 124
            +  +A V      L K+  PG  T +L+         +HP      KT   RVP    T
Sbjct: 82  QLGTYARVPNPIFRLLKVLTPGSYTFILNATHEVPRLMLHPKK----KTLGLRVPDNLIT 137

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
             L+ET   PL   +    G  +  +    +   +  ++ L+IDGG    G E +T+V++
Sbjct: 138 LALLETLEAPLMSSTLILPGAKAPLSEPEAIRDILGNQVDLVIDGG--NCGQEPTTVVDL 195

Query: 184 QCEKKVRILRPG 195
             +  V ILR G
Sbjct: 196 TGDYPV-ILREG 206


>gi|218195427|gb|EEC77854.1| hypothetical protein OsI_17110 [Oryza sativa Indica Group]
          Length = 408

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 12/181 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A+PT++ Y L     +  A+ RL  I++    + L     D+S V  +A VD    
Sbjct: 224 GAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQY 283

Query: 82  HLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC--GFTKKLIETYGHPLAIP 138
            L K   PGP T +LD  +T ++   +S    KT   RVP   G  + L+E +G PL   
Sbjct: 284 RLVKQATPGPYTFILD--ATKEVPRRVSHPQRKTIGLRVPDRKGL-QLLLELHGAPLLAT 340

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV----NVQCEKKVRILRP 194
           +    G+    N    + +    +I  ++D G     LE T V    ++      R++R 
Sbjct: 341 TLIPPGETEPMNDPSEIRARFEHQIDAVVDAGACP--LEPTTVVDLTDMATGGDPRVVRE 398

Query: 195 G 195
           G
Sbjct: 399 G 399


>gi|183599267|ref|ZP_02960760.1| hypothetical protein PROSTU_02728 [Providencia stuartii ATCC 25827]
 gi|188021499|gb|EDU59539.1| hypothetical protein PROSTU_02728 [Providencia stuartii ATCC 25827]
          Length = 206

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ E L+ G  I  PT++ Y +        A++R+  I++  A +       D+S + 
Sbjct: 17  INQSVEILNKGGVIVYPTDSGYAIGCRLEEKEALQRICRIRQLDANHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +  L  T ++   L     KT   RVP     + L+E
Sbjct: 77  NYAHVDNTAFRLIKNNTPGNYTFI--LRGTKEVPRRLMNEKRKTIGLRVPSNPIARDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL   S    G     +    +   + K++ L+I GG   IG + T V
Sbjct: 135 AVGEPLMSTSLIMPGDDFTQSDPEEIRDLLGKQVDLVIHGGY--IGQKPTTV 184


>gi|238797207|ref|ZP_04640708.1| Ribosomal modification protein RimN [Yersinia mollaretii ATCC
           43969]
 gi|238718844|gb|EEQ10659.1| Ribosomal modification protein RimN [Yersinia mollaretii ATCC
           43969]
          Length = 188

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 10/126 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K +  VD  SL  +
Sbjct: 21  IAYPTEAVFGLGCDPDSEKAVNALLTLKQRPWQKGLILIAANYEQLKPY--VDDSSLSDS 78

Query: 85  K---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
           +   +F  WPG +T V+   + T+     T +  +   RV      ++L   YG PL   
Sbjct: 79  QRETIFSCWPGAVTWVIP--ARTETPRWLTGSFDSLAVRVSDHPLVQQLCLQYGKPLVST 136

Query: 139 SANRSG 144
           SAN SG
Sbjct: 137 SANLSG 142


>gi|260550969|ref|ZP_05825174.1| yrdC domain-containing protein [Acinetobacter sp. RUH2624]
 gi|260405917|gb|EEW99404.1| yrdC domain-containing protein [Acinetobacter sp. RUH2624]
          Length = 205

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 10/196 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S + 
Sbjct: 16  IDQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRDLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD  +  L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + S + K I + IDGG   +   ++IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIESQLSKRIDVFIDGGFGTL-TTTSIVDLSGEH 190

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  ++   +
Sbjct: 191 P-EIIRHGAGDVSAFE 205


>gi|332521840|ref|ZP_08398289.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042512|gb|EGI78714.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 206

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 15/179 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54
           Q + I + N     ++K  E L  G  +  PT+TVYGL  D  N  A+ R+  IK     
Sbjct: 3   QFIRIYEENPNPKEIKKVIEVLKNGGLVIYPTDTVYGLGCDINNTKALERIARIKGVKLE 62

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
            A    IC   D+S +  +   +D  +  + K   PGP T +   L  +   P      K
Sbjct: 63  KANLSFICE--DLSNLSDYVKQIDTATFKILKRALPGPYTFI---LPGSKSLPSVFKKKK 117

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGG 170
               R+P    T ++++  G+PL   S     ++   T    ++       + L+IDGG
Sbjct: 118 EVGIRIPNNNITLEIVKALGNPLVSTSIRDEDEVLEYTTDPELILEKWDNLVDLVIDGG 176


>gi|228471330|ref|ZP_04056131.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3]
 gi|228306831|gb|EEK15944.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3]
          Length = 230

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 22/195 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68
           +A R+A + L  G  I  PT+T++GL  D+ N  A+ RL  +K RP   P++  V SD+ 
Sbjct: 47  SAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDMR 106

Query: 69  MVKKHASVDPLSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           +     +V  ++  L         + +PG   +   LL+      +  A+  T C  + C
Sbjct: 107 IPSYVRTVPSMAYQLIDVAVRPLTIIYPGGRNVAPQLLAEDGSIGIRIAS-DTLCQEI-C 164

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIGLES 178
              ++       PL   SAN +G  S  N   + H L   +   +PL  +  I   G+ S
Sbjct: 165 RLLRR-------PLVSTSANLAGTTSPHNYSEIDHELIKLVDYVVPLRQEEHID--GMPS 215

Query: 179 TIVNVQCEKKVRILR 193
            I+ +    +VR++R
Sbjct: 216 DIIKLGLNNEVRVIR 230


>gi|145641202|ref|ZP_01796782.1| hypothetical protein CGSHiR3021_05354 [Haemophilus influenzae
           R3021]
 gi|145274039|gb|EDK13905.1| hypothetical protein CGSHiR3021_05354 [Haemophilus influenzae
           22.4-21]
 gi|309973339|gb|ADO96540.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
          Length = 207

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V+  +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P    + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPGEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|119627723|gb|EAX07318.1| yrdC domain containing (E. coli), isoform CRA_b [Homo sapiens]
          Length = 239

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 19/118 (16%)

Query: 89  PGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ 145
           PGP+TLV++       D++P +         R+P   F + L + +  PLA+ SAN S Q
Sbjct: 106 PGPVTLVMERSEELNKDLNPFTP----LVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQ 161

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIG--------LESTIVNVQCEKKVRILRPG 195
            S  NV+      +  ++ L+IDGG  +IG        L ST+V++    K  I+RPG
Sbjct: 162 ASSLNVEEF--QDLWPQLSLVIDGG--QIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 215


>gi|119486656|ref|ZP_01620706.1| hypothetical protein L8106_12935 [Lyngbya sp. PCC 8106]
 gi|119456273|gb|EAW37405.1| hypothetical protein L8106_12935 [Lyngbya sp. PCC 8106]
          Length = 201

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 20/186 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HASVDPLSL- 81
           ++ PT+TV  LAV    P     ++++K+R A  PLI   +    +      +V+ L + 
Sbjct: 20  VSFPTDTVPALAV---QPQQAELIFQLKQRSADKPLILMGATPESLWPFVQGTVEELQVW 76

Query: 82  -HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             +A+ +WPG LTLVL   S      ++ ++  T   R+P     + I     PLA  SA
Sbjct: 77  SQMARQYWPGALTLVLP-ASEKVPRAMNPSDPTTIGLRIPNAEISRAILQRTGPLATTSA 135

Query: 141 NRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLE-----STIVNVQCEKKVRILR 193
           N SGQ  +  +     + I  + P +  +D G  K+  E     ST++    E    ILR
Sbjct: 136 NLSGQPPLLTM-----AEIEVQFPQVFTLDPGELKVVSEVSCVPSTVIKWNREGTWNILR 190

Query: 194 PGGLEI 199
            G + +
Sbjct: 191 QGAVTV 196


>gi|148826193|ref|YP_001290946.1| hypothetical protein CGSHiEE_06050 [Haemophilus influenzae PittEE]
 gi|229846228|ref|ZP_04466340.1| hypothetical protein CGSHi7P49H1_05268 [Haemophilus influenzae
           7P49H1]
 gi|148716353|gb|ABQ98563.1| hypothetical protein CGSHiEE_06050 [Haemophilus influenzae PittEE]
 gi|229811232|gb|EEP46949.1| hypothetical protein CGSHi7P49H1_05268 [Haemophilus influenzae
           7P49H1]
          Length = 207

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V+  +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P    + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPGEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|54294522|ref|YP_126937.1| hypothetical protein lpl1598 [Legionella pneumophila str. Lens]
 gi|53754354|emb|CAH15838.1| hypothetical protein lpl1598 [Legionella pneumophila str. Lens]
 gi|307610146|emb|CBW99692.1| hypothetical protein LPW_14601 [Legionella pneumophila 130b]
          Length = 206

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 18/200 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           LRKA   ++ G  I  PT++ Y L     N +A   IRRL ++ K   M  L+C   D+S
Sbjct: 17  LRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMT-LVCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124
            +  +A V      L K F PG  T +L+         +HP      +T   RVP    T
Sbjct: 74  QLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHP----KRRTLGLRVPDNTIT 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
             L+E    PL   +    G  +  +    +   +  +I LIIDGG    G E +T+V++
Sbjct: 130 LSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGG--NCGHEPTTVVDL 187

Query: 184 QCEKKVRILRPGGLEIETLK 203
             +  + I+R G  + E  K
Sbjct: 188 TGDYPI-IIREGKGDPEPFK 206


>gi|297183543|gb|ADI19672.1| putative translation factor (sua5) [uncultured Alteromonadales
           bacterium HF4000_16C08]
          Length = 191

 Score = 49.7 bits (117), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
            + G+ +  PTE V G+  D  + +A+  L EIK+RP    +I   ++ S +  + + + 
Sbjct: 19  FENGMLLVYPTEAVMGIGCDPDSESAVLALLEIKQRPIEKGVILVAANYSQLLPYVNDNA 78

Query: 79  LSLHL-AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
           +   +  ++F  WPGP T +L   ST+    L+  + K A         + + ET G P+
Sbjct: 79  IRPDMRTEIFSSWPGPNTWLLP-KSTSAPMWLTGKHDKIAVRVSNHPTVRAMCETLGKPV 137

Query: 136 AIPSANRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              SAN +GQ    ++   K I + S+     L ++G + K    STI + +    +R
Sbjct: 138 VSTSANLTGQPPARTLDEAKTIFADSV-----LYVEGSVGKSSKPSTIRDGETGDIIR 190


>gi|302791063|ref|XP_002977298.1| hypothetical protein SELMODRAFT_176163 [Selaginella moellendorffii]
 gi|300154668|gb|EFJ21302.1| hypothetical protein SELMODRAFT_176163 [Selaginella moellendorffii]
          Length = 297

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 17/190 (8%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D G+ + +PT+T+Y +  D  N  AI RLY IK   A  PL         + K+ +  P 
Sbjct: 95  DGGVGV-VPTDTIYAIVCDLHNRAAIERLYRIKDMDAKKPLSILCRSFQDIDKYTTGFPT 153

Query: 80  S-LHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTACFRVP-CGFTKKL 127
           S   +A+   PGP T +L   ++ D+    T          A  K+   R+P     +++
Sbjct: 154 SFFRVARQCLPGPYTFILP--ASKDMPKQCTRFGGSVAASYAPRKSVGVRIPDDAVWREM 211

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
                HPL   S  R           I++ +    +  I+DGG +++   ST+V++    
Sbjct: 212 AGQLEHPLLCTSVRRPADDEWMLDPAIIADTY-GSVDFIVDGG-TRVANPSTVVDMTGTM 269

Query: 188 KVRILRPGGL 197
            V + R  G+
Sbjct: 270 PVVLRRGKGV 279


>gi|149278884|ref|ZP_01885019.1| hypothetical protein PBAL39_06896 [Pedobacter sp. BAL39]
 gi|149230503|gb|EDM35887.1| hypothetical protein PBAL39_06896 [Pedobacter sp. BAL39]
          Length = 188

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 9/137 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMV 70
           + K  + L  G  I  PT+TV+GL  D+ N  A+ R+ +IK R +    I  + +D  + 
Sbjct: 6   IDKTLQILKDGGVILYPTDTVWGLGCDATNEQAVERINDIKARSSDKSFIVLLDTDAKLQ 65

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
              A V  ++  L + +   PLTLV      L+   I+   +  ++     V  GF ++L
Sbjct: 66  SYIAEVPDVAYDLIE-YAENPLTLVFPGAKNLAKNVINADGSVGIRI----VKHGFCQQL 120

Query: 128 IETYGHPLAIPSANRSG 144
           ++ +  P+   SAN+SG
Sbjct: 121 LQRFRKPITSTSANKSG 137


>gi|301168423|emb|CBW28013.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 207

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 8/194 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVS 65
           D   L+KA E L  G  +  PT+T + +  D  N   + +LY +K    +    LIC   
Sbjct: 11  DDRVLKKASETLKDGGLVCYPTDTNWIIVCDPFNKKGLEKLYRVKNEGPLKHYSLICDT- 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFT 124
            IS   + A +   +  + +   PG  T + +          +  + K    R  P   T
Sbjct: 70  -ISHAGEVAYIHDSAFKMIRKKVPGHYTFIFEAKKKITRAVQANKSDKEVGVRFCPDSIT 128

Query: 125 KKLIETYGHPLAIP--SANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           + LIE +G  L     +A+  G ++  T   + +  +    + +IID G  +   ESTIV
Sbjct: 129 QNLIEIHGDVLLSTNITADLLGLELGETFYSYQIEETFRGPLDMIIDPGEYEFVGESTIV 188

Query: 182 NVQCEKKVRILRPG 195
           ++  E +V ++R G
Sbjct: 189 DLSVEGEVEVIREG 202


>gi|288941781|ref|YP_003444021.1| SUA5/yciO/yrdC domain-containing protein [Allochromatium vinosum
           DSM 180]
 gi|288897153|gb|ADC62989.1| SUA5/yciO/yrdC domain protein [Allochromatium vinosum DSM 180]
          Length = 204

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR A   L  G  +A PTE VYGL  D  N  A+ RL  IK+R     LI   +D   ++
Sbjct: 26  LRLAVRCLRQGGVLAYPTEAVYGLGCDPWNGRAVARLLAIKRRSMTKGLILIAADPDQLR 85

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               V+PL     +     WPGP T +L     T      T    T   RV       +L
Sbjct: 86  PF--VEPLEPERQREIHATWPGPNTWLLPARVATPA--WLTGRFDTLAVRVSAHPLVAEL 141

Query: 128 IETYGHPLAIPSANRSGQ 145
              YG  +   SAN++ +
Sbjct: 142 CRAYGGAIVSTSANQAAR 159


>gi|16330823|ref|NP_441551.1| hypothetical protein sll1866 [Synechocystis sp. PCC 6803]
 gi|1653316|dbj|BAA18231.1| sll1866 [Synechocystis sp. PCC 6803]
          Length = 199

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 18/182 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           ++ PT+TV  LAV   N   I   YE+K+R A  PLI   + +  +  + +       L 
Sbjct: 19  VSFPTDTVPALAVRPENSALI---YELKQREASKPLILMAATVEQILPYLAGSQREKQLW 75

Query: 85  KL----FWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
           +     +WPG LTLVL        +I+P      +T   R+P       I     PLA  
Sbjct: 76  QAVMAEYWPGALTLVLPCSEKLPPEINPRQD---QTIGVRIPRQAISLEILLQTGPLATT 132

Query: 139 SANRSGQI---SITNVKHILSSSICKE-IPLIIDGGISKIGLESTIVNVQCEKKV-RILR 193
           SAN SGQ     + ++     +  C + + L   G I K GL ST+      K++ +ILR
Sbjct: 133 SANLSGQPPLEKLADIAETFPAVHCLDCLSLEQQGPIGK-GLPSTVAQWDGAKEIFQILR 191

Query: 194 PG 195
            G
Sbjct: 192 QG 193


>gi|88810631|ref|ZP_01125888.1| putative translation factor SUA5 [Nitrococcus mobilis Nb-231]
 gi|88792261|gb|EAR23371.1| putative translation factor SUA5 [Nitrococcus mobilis Nb-231]
          Length = 207

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+  E L  G  IA PT+T Y L        A+ R+  ++K    +       D+S + 
Sbjct: 17  IRRTAEILQRGGVIAYPTDTAYALGCCMGEREAVERIRRLRKLHERHNFTLACRDLSDIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A V   +  L K   PGP T VL   +T ++   L     KT   RVP       +  
Sbjct: 77  TYAKVGNNAFRLLKAHTPGPYTFVLP--ATGEVPRRLQHPKRKTIGIRVPDSAVANAICA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
             G PL   +     +        ++   I  ++ LIIDGG    GLE ST++++  E  
Sbjct: 135 ELGAPLMTTTLLLPHEDLPLTDPELIRERIGAQLDLIIDGGAG--GLELSTVIDLTGETP 192

Query: 189 VRILR 193
             I R
Sbjct: 193 AVIRR 197


>gi|332531465|ref|ZP_08407369.1| sua5/ycio/yrdc/ywlc family protein [Hylemonella gracilis ATCC
           19624]
 gi|332039134|gb|EGI75556.1| sua5/ycio/yrdc/ywlc family protein [Hylemonella gracilis ATCC
           19624]
          Length = 207

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 4/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L +G  +A+PT++ Y L     +  A  RL  I++    + L     D+S + 
Sbjct: 17  LKQAVALLASGQVLAVPTDSCYALVCHLDDKAAAERLRAIRRIDDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A VD     L K   PGP   +L+  S      LS    KT   RVP     ++L+  
Sbjct: 77  NYARVDNRQYRLLKAATPGPWAFILE-ASKEVPRRLSHPARKTIGLRVPDHKVLQELLAL 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PL   +   +G+    N    + S    ++  +ID G     LE T V      +  
Sbjct: 136 HGAPLLATTLIPAGETEPLNDAEEIRSRYQHDLAAVIDAGACP--LEPTTVIDLTGDEPE 193

Query: 191 ILRPG 195
           I+R G
Sbjct: 194 IIRRG 198


>gi|303248116|ref|ZP_07334381.1| SUA5/yciO/yrdC domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490515|gb|EFL50423.1| SUA5/yciO/yrdC domain protein [Desulfovibrio fructosovorans JJ]
          Length = 212

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 24/206 (11%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L AG  +  PTET + L   +    A+ R+  IK RPA  PL   V     V + A
Sbjct: 9   AARGLMAGGCLVYPTETFFALGALATEAAALARIVSIKARPATKPLPLLVGG---VGQFA 65

Query: 75  SVDPLSL----------HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           ++ P              LA+ FWPGPL+LV   +   D  P     +K A  RV   FT
Sbjct: 66  AILPEGFAAGLLAADFDDLARRFWPGPLSLV---VPCRDALP---GLVKDASGRVSVRFT 119

Query: 125 -----KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  L    G  +   SAN SG     + + +  + +     ++ +G     G+ ST
Sbjct: 120 PHPTAAALCRLAGGAVVATSANVSGNPPAASPEALDPAVVAAADGVVTEGPAPGGGVAST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205
           +  +   +++RI R G   +  L+ A
Sbjct: 180 VAGLLGGRRLRIFREGATPLGALRAA 205


>gi|91070575|gb|ABE11478.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone HOT0M-7C8]
          Length = 193

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 22/199 (11%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----IS 68
           + A + L AGLPI  PT+T+  +      P   + +YE KKR    PLI   S     I 
Sbjct: 7   KSALKTLRAGLPIIFPTDTLPAIGC---LPKFSKIIYEFKKRDRNKPLILMGSKYKQLID 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            V + A  D     +A  +WPG LT+V+   ++   + L T+   T   R+P     + L
Sbjct: 64  FVHESAKED--FEKIASKYWPGALTMVIP--ASEHQNALLTSKDHTLGLRIPHSSIAQSL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGLESTIVNV 183
           I+  G PL   SAN SG       + I     S +I   IP     G +     STI++ 
Sbjct: 120 IQETG-PLLTSSANISGFTGSITAEGIALDFPSVAILGPIPWEKSSGKA-----STIISW 173

Query: 184 QCEKKVRILRPGGLEIETL 202
           +     R++R G + ++ L
Sbjct: 174 KKIGDWRLIREGEVLVQEL 192


>gi|260592176|ref|ZP_05857634.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella veroralis F0319]
 gi|260535810|gb|EEX18427.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella veroralis F0319]
          Length = 189

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KA E +  G  I  PT+TV+G+  D+ N  A+ ++Y +K+R     LIC V   + 
Sbjct: 5   DDIKKAIEVMKQGGIILYPTDTVWGIGCDATNAEAVAKVYSLKRRDDSKALICLVDSDNR 64

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++++  ++  ++  L       P TL+LD     ++ P   A   +   R+    F+ +L
Sbjct: 65  LQRYVHNIPDVAWQLIDAV-EKPTTLILD--GAVNLAPNLIAEDGSIGIRITKEPFSHEL 121

Query: 128 IETYGHPLAIPSANRSGQISITN 150
              +   +   SAN SG+ +  N
Sbjct: 122 CYRFQKAIVSTSANISGEPAAQN 144


>gi|269215063|ref|ZP_05987667.2| protein RimN [Neisseria lactamica ATCC 23970]
 gi|269208379|gb|EEZ74834.1| protein RimN [Neisseria lactamica ATCC 23970]
          Length = 189

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +I   +
Sbjct: 6   IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 65

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
               ++    +   +L  + +  WP P T +L   S   +  L          R+P    
Sbjct: 66  QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRIPDHAG 124

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L +  G PL   S NR+G+ +    + +      +++  I+ G I +    S I++ 
Sbjct: 125 ARRLCQALGMPLVSTSCNRAGKRACRAEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 182

Query: 184 QCEKKVR 190
           +  K++R
Sbjct: 183 ETGKRLR 189


>gi|329946638|ref|ZP_08294050.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526449|gb|EGF53462.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 205

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D GL +A PT++ Y LA    N   + R+  I++    +      +D + V   A V   
Sbjct: 26  DGGL-VAYPTDSGYALACAPGNKEGLDRIRAIRQLDGKHNFTFVCADFAQVGPLAIVGNN 84

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLIETYGHPLA 136
           +  L K   PGP T +L    T D+ P  T N K  T   R+P    T+ L+  +G P+ 
Sbjct: 85  AFRLIKRLTPGPWTFILK--GTKDV-PRMTLNPKKHTLGVRIPDHAITQSLVAEFGAPIL 141

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
             +  R GQ         +  S+   I ++I+G + + G  +T+V++  +    +LR G 
Sbjct: 142 SSTFIRPGQEEPETNGWEVEESLGHLIDVVIEGPVGQ-GEPTTVVDL-TDDVPEVLREGA 199

Query: 197 LEIETL 202
            +I  L
Sbjct: 200 GDISLL 205


>gi|308188319|ref|YP_003932450.1| hypothetical protein Pvag_2851 [Pantoea vagans C9-1]
 gi|308058829|gb|ADO11001.1| Uncharacterized protein yrdC [Pantoea vagans C9-1]
          Length = 190

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 35/186 (18%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++L    E L+    IA PTE V+GL  D  + +A+  L  +K+RP    LI   +D S
Sbjct: 7   ADSLETCLEHLNRQAVIAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYS 66

Query: 69  MVKKHASVDPLS-LHLAKLF--W--------------PGPLTLVLDLLSTT-----DIHP 106
            ++ + S   LS +   ++F  W              P  LT   D L+       D+  
Sbjct: 67  QLEPYISARELSVVQRERMFACWPGPVTFVVPVPPQTPRWLTGQFDSLAIRVSDHPDVQA 126

Query: 107 L----------STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
           L          ++ANL     + PC   +++ + +G P  + S    G+++ + ++ ++S
Sbjct: 127 LCRAFGKPLVSTSANLSG---QPPCRTAEEVKQQFGEPFPVLSGKTGGRLNPSEIRDVIS 183

Query: 157 SSICKE 162
             + ++
Sbjct: 184 GELIRQ 189


>gi|170077858|ref|YP_001734496.1| YrdC domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169885527|gb|ACA99240.1| yrdC domain protein [Synechococcus sp. PCC 7002]
          Length = 197

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 22/190 (11%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---ASVDP 78
           G  ++ PT+TV  LA     P A   +Y++K+R    PLI   + +  +  +   +  + 
Sbjct: 16  GQVVSFPTDTVPALAA---QPDAAPLIYQLKRRSPDKPLILMTASLPEIWDYVVGSETEK 72

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
                +A+ +WPG LTLVL          ++  N  T   RVP     + ++   G PLA
Sbjct: 73  AQWQAIAQQYWPGALTLVLPASEKVSAA-MNPTNSGTIGVRVPDLALAQGILRETG-PLA 130

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLI------IDGGISKIGL-ESTIVNVQCEKKV 189
             SANRSG   +  +     ++I KE P I           SKIG  + + V        
Sbjct: 131 TTSANRSGSDPLEWM-----AAIAKEFPEIPVLDCTTQERTSKIGSGQPSTVAQWTGSGW 185

Query: 190 RILRPGGLEI 199
           RILR G + +
Sbjct: 186 RILRQGAVSL 195


>gi|291287679|ref|YP_003504495.1| SUA5/yciO/yrdC domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884839|gb|ADD68539.1| SUA5/yciO/yrdC domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 201

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I     +NA+      L    P+   T+T+YG+     +  +  ++++IK R    P 
Sbjct: 1   MLIAKAEGNNAIEIFRRALTKSEPVIFSTDTIYGIGAPVSDVKSNEKIFDIKGRDRTKPF 60

Query: 61  ICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
              +S +  + + A ++    L   +  WP P+T +L   +   ++PL T N  T   R+
Sbjct: 61  PILISSLKQLSEIAIIESEKQLKALEEVWPAPVTFILK--AKKGLNPLFTIN-GTVAVRM 117

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           P   +   LI+T G P++  SAN SG+    + K ++ +   K I  I D
Sbjct: 118 PDKKWLLNLIDTVG-PVSATSANLSGENYSNSEKAVIETFKSKIIFFIFD 166


>gi|218129310|ref|ZP_03458114.1| hypothetical protein BACEGG_00887 [Bacteroides eggerthii DSM 20697]
 gi|317475279|ref|ZP_07934545.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988487|gb|EEC54808.1| hypothetical protein BACEGG_00887 [Bacteroides eggerthii DSM 20697]
 gi|316908533|gb|EFV30221.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 204

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 11/189 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+ ++K   P  N L     D+S +
Sbjct: 15  LQQVIDILNNGGIIIYPTDTMYAIGCHGLKERAIERICQLKAIDPKKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            ++A  D  +  L K   PGP T +   L+ T   P    N K    R+P     ++L  
Sbjct: 75  SEYAKFDNNTFKLMKRNLPGPFTFI---LNGTVRLPKIFRNRKEVGIRMPDNPIIQELAR 131

Query: 130 TYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
               P+   +     +  I       ++       + L+IDGGI   G+ES+ + V C  
Sbjct: 132 FLDAPIMTTTLPYEENEDIEYCTDPELIDEKFGNIVDLVIDGGIG--GIESSTI-VDCTN 188

Query: 188 -KVRILRPG 195
            +  I+R G
Sbjct: 189 GEAEIVRQG 197


>gi|325068851|ref|ZP_08127524.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces oris K20]
          Length = 205

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 9/186 (4%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D GL +A PT++ Y LA    N   + R+  I++    +      +D   V   A V   
Sbjct: 26  DGGL-VAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFGQVGPLAIVGNN 84

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLIETYGHPLA 136
           +  L K   PGP T +L    T D+ P  T N K  T   R+P    T+ L+  +G P+ 
Sbjct: 85  AFRLIKRLTPGPWTFILK--GTKDV-PRMTLNPKKHTLGVRIPDHAITQSLVAEFGAPIL 141

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
             +  R GQ         +  S+   I ++I+G + + G  +T+V++  +    +LR G 
Sbjct: 142 SSTFIRPGQEEPETNGWEIQDSLGHLIDVVIEGPVGQ-GEPTTVVDL-TDDVPEVLREGA 199

Query: 197 LEIETL 202
            +I  L
Sbjct: 200 GDISLL 205


>gi|158338241|ref|YP_001519418.1| Sua5/YciO/YrdC/YwlC family protein [Acaryochloris marina MBIC11017]
 gi|158308482|gb|ABW30099.1| Sua5/YciO/YrdC/YwlC family protein [Acaryochloris marina MBIC11017]
          Length = 220

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 16/192 (8%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +  PT+TVY +  D     A++R+ +IK+     PL    S +S + ++A V   + 
Sbjct: 27  GAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMSNDKPLTFLCSSLSNIAQYARVSDSAY 86

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPCG-FTKKLIETYGHPLAIP 138
            + +   PGP T    LL  T + P    N   KT   RVP       L+++   P+   
Sbjct: 87  KIMRKLIPGPYTF---LLPATKLVPKLVQNPKRKTTGIRVPDHPVCLSLLDSLATPIIST 143

Query: 139 SANRSGQISITNVKHI--------LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           SA+ S Q S+              L     K++ LII+ G       STI+++ C+ +  
Sbjct: 144 SAHFSDQESVHGWSKKQEPLTPVELFDHFDKQVDLIIENGQDLSTKVSTILDL-CQDQPA 202

Query: 191 ILRPGGLEIETL 202
           ++R  GL  +TL
Sbjct: 203 VVR-EGLGWDTL 213


>gi|311742467|ref|ZP_07716276.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM
           15272]
 gi|311314095|gb|EFQ84003.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM
           15272]
          Length = 207

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 85/192 (44%), Gaps = 9/192 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISM 69
           + +A E + +G  IA PT++ Y L     +  A+ R+  I+     +   L+CH  D + 
Sbjct: 17  VEQAVEIIRSGGLIAYPTDSGYALGAQIGSADALTRIRSIRDLDDKHHFTLVCH--DFAQ 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKL 127
           +     VD       K   PGP T +L   +T ++   L  A  +T   R+P    T+ L
Sbjct: 75  LGHVVQVDNAVFRAVKAATPGPYTFILP--ATREVPKRLLQAKKRTVGVRIPDHVVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         ++ ++   I  ++D G   +G  +T+V++  + 
Sbjct: 133 VTALGEPLLSSTLILPGETDPMTTAWEIAEALDGRIEAVVDAGDEVVGRPTTVVDL-SDG 191

Query: 188 KVRILRPGGLEI 199
             ++LR G  ++
Sbjct: 192 HAQVLREGAGDV 203


>gi|325274080|ref|ZP_08140224.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas sp. TJI-51]
 gi|324100791|gb|EGB98493.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas sp. TJI-51]
          Length = 201

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 5/178 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  +  PT++ Y L     +  AI R+  ++     +       D+S + 
Sbjct: 9   IRQAVEIIRKGGVVVYPTDSAYALGCQIGDKAAIERVRRLRGLDKTHNFTLMCCDMSQLG 68

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD  +  L K   PGP T +L+   T ++   L     +T   RVP    T  L+ 
Sbjct: 69  LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHEKRRTIGLRVPDHAITLALLA 126

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             G PL   S    G        + +   +   + L+IDGG   +   STI+++  ++
Sbjct: 127 ELGEPLMSVSLILPGDNEPMTDPYEIRERLEHHVDLVIDGGYGDLK-ASTIIDLSGDE 183


>gi|89092294|ref|ZP_01165248.1| hypothetical protein MED92_05763 [Oceanospirillum sp. MED92]
 gi|89083382|gb|EAR62600.1| hypothetical protein MED92_05763 [Oceanospirillum sp. MED92]
          Length = 191

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 82/194 (42%), Gaps = 8/194 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  ++  D   + ++   +  G  IA PTE V+GL  D  N  A+ +L +IK+RP    L
Sbjct: 1   MSSINNADWWHIHQSVRAIRQGGVIAYPTEAVWGLGCDPYNEDAVLKLLDIKRRPMHKGL 60

Query: 61  I---CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +    ++S I  + +  S D      A   WPGP T +L       I      +      
Sbjct: 61  VLVAANLSQIDFLLEDLSQDEYDKVTAN--WPGPFTWILP-DKKNRIPAWIKGDYSAVAV 117

Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RV    + + L E YG  +   SAN +      +   +  +   ++I  ++ G +     
Sbjct: 118 RVSAHSSVRNLTEAYGSFIVSTSANPAAHEPARDSLRV-KTYFGEKIDYLLHGELGDSAQ 176

Query: 177 ESTIVNVQCEKKVR 190
            + I +++ ++ VR
Sbjct: 177 PTQIRDLKSDRLVR 190


>gi|110637486|ref|YP_677693.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406]
 gi|110280167|gb|ABG58353.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406]
          Length = 208

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 8/197 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDIS 68
           N +  A E +  G  +  PT+TVY +  D  N  A+ R+  +K  +P    L     D+S
Sbjct: 16  NKILTAVEIIRKGGIVIYPTDTVYAIGCDIHNQKAVERVCRLKNIQPGKINLSFICQDLS 75

Query: 69  MVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + ++    P     + K   PGP T +L+  +  ++  +     KT   RVP     + 
Sbjct: 76  HISEYTKALPTQVFKVMKQVLPGPYTFILN--ANNNVPNILNTKKKTIGIRVPDNRIVQL 133

Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L++  G+P+   S     +I   T     +       + +IIDGG    G E++ +    
Sbjct: 134 LLKELGNPILSTSIKNEDEILEYTTDPEEIYERYKNVVDVIIDGGFG--GNEASTILDCT 191

Query: 186 EKKVRILRPGGLEIETL 202
             ++ ++R G   IE L
Sbjct: 192 GNEIEVIREGKGSIEEL 208


>gi|148358974|ref|YP_001250181.1| translation factor [Legionella pneumophila str. Corby]
 gi|296107023|ref|YP_003618723.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
 gi|148280747|gb|ABQ54835.1| translation factor [Legionella pneumophila str. Corby]
 gi|295648924|gb|ADG24771.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
          Length = 206

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 18/200 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           LRKA   ++ G  I  PT++ Y L     N +A   IRRL ++ K   M  L+C   D+S
Sbjct: 17  LRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMT-LVCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124
            +  +A V      L K F PG  T +L+         +HP      +T   RVP    T
Sbjct: 74  QLGTYAKVSNPIFRLLKAFTPGSYTFILNATHEVPRLMLHP----KRRTLGLRVPDNTIT 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
             L+E    PL   +    G  +  +    +   +  +I LIIDGG    G E +T+V++
Sbjct: 130 LSLLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGG--NCGHEPTTVVDL 187

Query: 184 QCEKKVRILRPGGLEIETLK 203
             +  V I+R G  + E  +
Sbjct: 188 TGDYPV-IIREGKGDPEPFR 206


>gi|26991184|ref|NP_746609.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
 gi|24986231|gb|AAN70073.1|AE016647_3 Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
          Length = 221

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y L     + +AI R+  ++     +       D+S + 
Sbjct: 29  IKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKTHNFTLMCCDMSQLG 88

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVP-CGFTKKLIE 129
            +A VD  +  L K   PGP T +L+   T ++  L   +  +T   RVP    T  L+ 
Sbjct: 89  LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHDKRRTIGLRVPDHAITLALLA 146

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             G PL   S    G        + +   +   + L+IDGG   +   STI+++  ++
Sbjct: 147 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDLK-ASTIIDLSGDE 203


>gi|297518505|ref|ZP_06936891.1| hypothetical protein EcolOP_12763 [Escherichia coli OP50]
          Length = 175

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P+   S    G     +    +   + K++ LII GG
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175


>gi|302536945|ref|ZP_07289287.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. C]
 gi|302445840|gb|EFL17656.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. C]
          Length = 215

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 31/211 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+T+YG+  D+ +  A+  L   K R    P    +   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTLYGIGADAFSAEAVGDLLAAKGRGRNMPTPVLIGSPNT 74

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLV--------LDLLSTTDIHPLSTANLKTACFR 118
           +  H  V   S     L   FWPG LTLV         DL  T            T   R
Sbjct: 75  L--HGLVTDFSEQAWELVDAFWPGGLTLVAKHQPSLAWDLGETR----------GTVAVR 122

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITN---VKHILSSSICKEIPLIIDGGISKIG 175
           +P       + T   P+A+ SAN SG  +  +    + +L  S+     + +DGG +   
Sbjct: 123 MPLHPVAIELLTEVGPMAVSSANLSGHPAPADCDAAREMLGDSVS----VYLDGGPTPST 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
             S+IV+V  +  V +LR G L    L+  +
Sbjct: 179 EPSSIVDVTGKVPV-LLREGALSAAQLREVV 208


>gi|300718668|ref|YP_003743471.1| hypothetical protein [Erwinia billingiae Eb661]
 gi|299064504|emb|CAX61624.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 200

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 10/126 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           IA PTE V+GL  +  + +A+  L  +K+RP    LI   ++ + ++ +  +D L L  A
Sbjct: 33  IAYPTEAVFGLGCNPDSESAVMALLALKQRPVEKGLILIAANYAQLQPY--IDDLGLTDA 90

Query: 85  ---KLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
              K+F  WPGP+T V+   S T      T    +   RV      ++L   +G PL   
Sbjct: 91  QKEKMFASWPGPVTWVMP--SRTSTPRWLTGRFDSLAVRVTDHPDVQRLCLGFGKPLVST 148

Query: 139 SANRSG 144
           SAN +G
Sbjct: 149 SANLTG 154


>gi|152997398|ref|YP_001342233.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas sp. MWYL1]
 gi|150838322|gb|ABR72298.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas sp. MWYL1]
          Length = 210

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA PT+  Y L     +  A+ R+  I++    +       D+S + 
Sbjct: 21  VKQAAEVIRNGGVIAYPTDCGYSLGCHLGDKDALDRIRAIRRLDDKHNFTLVCRDLSEIS 80

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKL 127
            +A  D     L K   PGP T +    S      +HP      KT   RVP       L
Sbjct: 81  TYARFDNRLYRLLKNNTPGPYTFIFSATSEVPRRLLHP----KRKTIGIRVPNNNIVSAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G+       + +  ++   + L+IDGG    GL+ T V      
Sbjct: 137 LEELGEPIMSSSLILPGETDPMTDPYDIRDTLEHALDLVIDGGFC--GLQPTTVVKMDAD 194

Query: 188 KVRILRPG 195
            + ++R G
Sbjct: 195 SIEVVRVG 202


>gi|270160110|ref|ZP_06188766.1| Sua5/YciO/YrdC/YwlC family protein [Legionella longbeachae D-4968]
 gi|289165112|ref|YP_003455250.1| translation factor [Legionella longbeachae NSW150]
 gi|269988449|gb|EEZ94704.1| Sua5/YciO/YrdC/YwlC family protein [Legionella longbeachae D-4968]
 gi|288858285|emb|CBJ12153.1| putative translation factor [Legionella longbeachae NSW150]
          Length = 206

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 89/200 (44%), Gaps = 18/200 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           LRKA   ++ G  I  PT++ Y L     N +A   IRRL ++ K   M  L+C   D+S
Sbjct: 17  LRKAVNIIEDGGIIVYPTDSGYALGCGLGNKSALERIRRLRQLDKNHNMT-LVCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124
            +  +A V      L K F PG  T +L+         +HP      KT   RVP    T
Sbjct: 74  QLGLYARVSNPIFRLLKAFTPGAYTFILNATHEVPRLMLHP----KRKTLGLRVPDNVIT 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
             L+E    PL   +    G  +  +    +   +  +I L+IDGG    G E +T+V++
Sbjct: 130 LALLECLEAPLMSTTLILPGAKAPLSEPEAIRDLLGNQIDLVIDGG--HCGQEPTTVVDL 187

Query: 184 QCEKKVRILRPGGLEIETLK 203
             +  V I+R G  + E  K
Sbjct: 188 TGDYPV-IIREGKGDPEPFK 206


>gi|325269063|ref|ZP_08135684.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella multiformis DSM
          16608]
 gi|324988684|gb|EGC20646.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella multiformis DSM
          16608]
          Length = 189

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDI 67
           + +RKA E +  G  I  PT+TV+G+  D+ N  A+ ++Y +K+R     LIC V SD 
Sbjct: 4  EDDIRKAIEVMRKGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVDSDD 63

Query: 68 SMVKKHASVDPLSLHLAKLFWPGPLTLVLD 97
           + +   +V  ++  L       P TL+LD
Sbjct: 64 RLQRYVRNVPDVAWQLIDAV-ERPTTLILD 92


>gi|313497709|gb|ADR59075.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida BIRD-1]
          Length = 209

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y L     + +AI R+  ++     +       D+S + 
Sbjct: 17  IKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKTHNFTLMCCDMSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVP-CGFTKKLIE 129
            +A VD  +  L K   PGP T +L+   T ++  L   +  +T   RVP    T  L+ 
Sbjct: 77  LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHDKRRTIGLRVPDHAITLALLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             G PL   S    G        + +   +   + L+IDGG   +   STI+++  ++
Sbjct: 135 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDLK-ASTIIDLSGDE 191


>gi|120552989|ref|YP_957340.1| SUA5/yciO/yrdC domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|212288209|sp|A1TWN4|RIMN_MARAV RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|120322838|gb|ABM17153.1| translation factor SUA5 [Marinobacter aquaeolei VT8]
          Length = 190

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 8/155 (5%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  IA PTE V+GL  D  N  A+  + E+K+RP    +I   + +  V+    +DPL 
Sbjct: 21  AGGVIAYPTEAVWGLGCDPWNREAVEYILELKQRPMEKGVILVAASVEQVR--FLLDPLP 78

Query: 81  LHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
             +   A   WPGP+T +L  ++      +   +   A         + L E  G PL  
Sbjct: 79  DAVQSEALRHWPGPVTCLLPDVNQQVPEWVRGKHSSIAVRVSDHPVVRALCEATGMPLVS 138

Query: 138 PSANRSGQI---SITNVKHILSSSICKEIPLIIDG 169
            S N +G+    +I  V+      I + +P  + G
Sbjct: 139 TSCNPAGRQPARAIWQVRRYFGDRIDRIVPGALGG 173


>gi|53803488|ref|YP_114629.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str.
           Bath]
 gi|53757249|gb|AAU91540.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str.
           Bath]
          Length = 207

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 10/196 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISM 69
           +R+A E +  G  I  PT++ Y          A+ R+  I++    +   LICH  D+S 
Sbjct: 17  IRQAAEIVRQGGVIVYPTDSSYAFGCQLDRKDALHRIRTIRQLDEEHNFTLICH--DLSQ 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKL 127
           V   A ++  +  L K   PGP T +L+  +T ++   L     KT   R+P    ++ L
Sbjct: 75  VSAFARINNEAFRLIKTLTPGPYTFLLE--ATREVPRRLQHPKRKTIGIRLPDNAVSQML 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   + LI+  G+     E+TIV++  E 
Sbjct: 133 VAELGEPLFSSTLILPGETEGLADPEDIRERVGTRVELILAAGVIPFA-ETTIVDLTGEF 191

Query: 188 KVRILRPGGLEIETLK 203
            V I+R G   I  L+
Sbjct: 192 PV-IVRQGKGSIGFLR 206


>gi|333007604|gb|EGK27082.1| yrdC domain protein [Shigella flexneri K-272]
 gi|333019538|gb|EGK38818.1| yrdC domain protein [Shigella flexneri K-227]
          Length = 206

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKVEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYSFVDNVAFRLMKNNTPGSYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P+   S    G     +    +   + K++ LII GG
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175


>gi|261342752|ref|ZP_05970610.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288314931|gb|EFC53869.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 190

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 6/137 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---ASVDPLSL 81
           IA PTE V+G+  D  +  A+ RL  +K+RP    LI   ++   +K +   A + P   
Sbjct: 23  IAYPTEAVFGVGCDPDSEKAVSRLLALKQRPVEKGLILIAANYEQLKPYIDDAMLTPAQR 82

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
                 WPGP+T V     TT      T    +   RV       +L   +G PL   SA
Sbjct: 83  ETIFSAWPGPVTFVFPAQPTTPR--WLTGRFDSLAVRVTDHPLVVELCLAFGKPLVSTSA 140

Query: 141 NRSGQISITNVKHILSS 157
           N +G       + +L+ 
Sbjct: 141 NLTGLPPCRTTEEVLAQ 157


>gi|254483308|ref|ZP_05096539.1| putative yrdC domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036403|gb|EEB77079.1| putative yrdC domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 188

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 22/131 (16%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTE V+GL+ D  +  A+ RL  IK R           D  ++   ASV+ L   LA
Sbjct: 23  VACPTEAVWGLSCDPDSEQAVSRLLAIKGRSV---------DKGLILVAASVEQLGFLLA 73

Query: 85  KL----------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            L           WPGP T ++       + P      +T   RV      + L E +G 
Sbjct: 74  DLSQAQKQQLSASWPGPNTWLVP--HQQRVQPWVHGRFETVAVRVSQHPVVRSLCEAWGG 131

Query: 134 PLAIPSANRSG 144
           PL   SAN +G
Sbjct: 132 PLVSTSANPAG 142


>gi|91069910|gb|ABE10839.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone ASNC2150]
          Length = 193

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 12/194 (6%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC----HVSDIS 68
           + A + L +GLPI  PT+T+  +      P     +YE KKR    PLI     H   I 
Sbjct: 7   KSALKTLKSGLPIIFPTDTLPAIGC---LPKFSNIIYEFKKRDRDKPLILMGSEHKQLID 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            V + A  D    ++A  +WPG LT+V+   ++     + T+N  T   R+P  +  + +
Sbjct: 64  YVHESAKED--YENIASKYWPGALTMVIP--ASEKQTTILTSNDLTLGLRIPNSYMAQSL 119

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                PL   SAN SG      V+ I       +I   I  G  + G  STI+  +    
Sbjct: 120 MRETGPLLTSSANISGFKGSITVEGIALDFPTLKILGPIPWG-KRSGKASTIIFWKKSGD 178

Query: 189 VRILRPGGLEIETL 202
            R++R G + +  L
Sbjct: 179 WRLIRQGEVLVREL 192


>gi|260062809|ref|YP_003195889.1| putative Sua5/yciO/yrdC family protein [Robiginitalea biformata
           HTCC2501]
 gi|88784377|gb|EAR15547.1| putative Sua5/yciO/yrdC family protein [Robiginitalea biformata
           HTCC2501]
          Length = 207

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 14/180 (7%)

Query: 11  ALRKACE-FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSD 66
           A+R+  E F D GL I  PT+TVYGL  D  N  A+ RL  IK      A    IC   D
Sbjct: 16  AVRQVVEAFRDGGLVI-YPTDTVYGLGCDITNSRALERLARIKGVKLHKANWSFICE--D 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S +  +   +D  +  + K   PGP T +   L   +  P      KT   RVP     
Sbjct: 73  LSNLSDYVRQIDTQTFKILKRALPGPYTFI---LPGNNNLPRDFKKKKTVGIRVPDNRIA 129

Query: 125 KKLIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             L+   G P+   S  +    +  T    ++       + +++DGG     + ST++++
Sbjct: 130 HALVAGLGRPIVSTSIRDEDDVLEYTTDPELIYEKWENLVDVVVDGGYGG-NVASTVIDL 188


>gi|325335186|gb|ADZ11460.1| Sua5A [Riemerella anatipestifer RA-GD]
          Length = 466

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 13/197 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVS 65
            N +++  + LD G  I  P++TVY L  D  N  A+ +L  +KK     A   +IC  +
Sbjct: 277 ENLIKEVIKTLDNGGLIIYPSDTVYALGCDINNIKAMEKLAALKKIKLEKAHFSIIC--N 334

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           D+S +      +D     L K   PG  T +L+        PL+    KT   RVP    
Sbjct: 335 DLSHLSSFTKPIDNSVFRLLKSHIPGAFTFILEANKNL---PLAYKGHKTVGIRVPDHPI 391

Query: 125 KKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            +LI E  G P+A  S     + I  +    +++      + ++ID G     + STIV+
Sbjct: 392 PQLIVEKLGRPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVASTIVD 450

Query: 183 VQCEKKVRILRPGGLEI 199
           +       I+R G  E+
Sbjct: 451 L-TSGVAEIIRQGKGEL 466


>gi|284921148|emb|CBG34214.1| conserved hypothetical protein [Escherichia coli 042]
 gi|323964604|gb|EGB60077.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M863]
 gi|323977102|gb|EGB72189.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TW10509]
 gi|327253957|gb|EGE65586.1| yrdC domain protein [Escherichia coli STEC_7v]
          Length = 206

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQKPTTVIDLTDDTP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|309789073|ref|ZP_07683668.1| yrdC domain protein [Shigella dysenteriae 1617]
 gi|308923344|gb|EFP68856.1| yrdC domain protein [Shigella dysenteriae 1617]
          Length = 206

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAVERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P+   S    G     +    +   + K++ LII GG
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175


>gi|77165846|ref|YP_344371.1| putative translation factor, Sua5/YciO/YrdC/YwlC [Nitrosococcus
           oceani ATCC 19707]
 gi|254433299|ref|ZP_05046807.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus oceani AFC27]
 gi|76884160|gb|ABA58841.1| translation factor SUA5 [Nitrosococcus oceani ATCC 19707]
 gi|207089632|gb|EDZ66903.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus oceani AFC27]
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A  FL     I  PT++ Y L     N  A  R+ +++     +       D+S + 
Sbjct: 17  LNQAVNFLQQEGLIVYPTDSGYALGCRVGNKAAADRIRQLRGLGNRHEFSLVSRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V   +  L K   PG  T +    +T ++   L     +T   RVP    T+ L+ 
Sbjct: 77  LYAKVGNSAFRLLKALTPGAYTFIFK--ATREVPRRLQDPKRRTIGIRVPDNTVTQALLA 134

Query: 130 TYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           T G PL   +    G+ I +T+ + I    I  ++ LIIDGG    G E T V    E  
Sbjct: 135 TLGEPLISSTLLLPGEDIPLTDPEEI-RDRIGSQVDLIIDGGYC--GFEPTTVVDLVEDM 191

Query: 189 VRILRPG 195
            +++R G
Sbjct: 192 PKVIREG 198


>gi|82776624|ref|YP_402973.1| hypothetical protein SDY_1335 [Shigella dysenteriae Sd197]
 gi|81240772|gb|ABB61482.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 218

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 29  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAVERICRIRQLPDGHNFTLMCRDLSELS 88

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 89  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 146

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P+   S    G     +    +   + K++ LII GG
Sbjct: 147 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 187


>gi|302878814|ref|YP_003847378.1| Sua5/YciO/YrdC/YwlC family protein [Gallionella capsiferriformans
           ES-2]
 gi|302581603|gb|ADL55614.1| Sua5/YciO/YrdC/YwlC family protein [Gallionella capsiferriformans
           ES-2]
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   L  G  +  PT++ Y L     +  A+ R+ EI++    + L     D+S + 
Sbjct: 17  IKQAVSILKDGGIVVYPTDSCYALGCLLDDKNAVSRIREIRQLDDEHYLTLMCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD     L K   PG  T +L+  +T ++   L      T   R+P       L+E
Sbjct: 77  NYARVDNAQFRLLKANTPGSYTFILE--ATREVPKRLQHPKRSTIGIRIPDHPVALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P++  +     ++   N    +   + K++  +IDGG + +   +T++++  E  V
Sbjct: 135 ELGEPMSSSTLILPDEVWPLNDAERIRELLEKKVDAVIDGGAAGVDF-TTVIDLTGEHPV 193

Query: 190 RILRPG 195
            +LR G
Sbjct: 194 -LLRQG 198


>gi|329904391|ref|ZP_08273785.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547995|gb|EGF32734.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 207

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 6/184 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E +  G  +A+PT++ Y L     +  A+ RL  ++     + L     D++ +  +
Sbjct: 19  QAAEIIHRGGIVAMPTDSSYALVCHLDDKDAVTRLRRLRGVDDKHLLTLLCRDLAEIALY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD     L K   PG  T++L+  +T ++   +S  + KT   RVP       L+E  
Sbjct: 79  AKVDNKQYRLLKAATPGSYTMILE--ATKEVPRRISHPSRKTIGLRVPENKIALALLEQL 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL   +    G          +   I K++ LIIDGG   +   +T+V++  ++ V +
Sbjct: 137 GQPLLGTTLILPGDEHPLTDAESVRERIEKQVDLIIDGGACSLE-PTTVVDLSGDEPV-L 194

Query: 192 LRPG 195
           +R G
Sbjct: 195 IRAG 198


>gi|170768140|ref|ZP_02902593.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627]
 gi|170122906|gb|EDS91837.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627]
          Length = 218

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 29  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 88

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 89  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 146

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P+   S    G     +    +   + K++ LII GG
Sbjct: 147 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 187


>gi|33860877|ref|NP_892438.1| hypothetical protein PMM0319 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633819|emb|CAE18778.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 194

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 19/206 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M++ D    + A E L++G PI   T+T+  +      P     +Y+IKKR    PLI  
Sbjct: 1   MNVIDQ---KLALEKLNSGSPIVFQTDTLPAIGCL---PKFSEMIYKIKKRDIKKPLILM 54

Query: 64  VSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            ++        H S      ++A  +WPGPLT+++   S       ST+N  T   R+P 
Sbjct: 55  GAENFEFDDFVHESALGDFKYIASCYWPGPLTIIIP-CSEKRRSFSSTSNF-TLGLRIPN 112

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGLE 177
               KL+     PL   SAN SG  + T+ K I     + +I   IP     G +     
Sbjct: 113 SKMAKLLLKESGPLLTSSANLSGLPTATSAKEISVNLPNVNILGPIPWEKCSGKA----- 167

Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203
           STI+      K +I+R G + I  +K
Sbjct: 168 STIITWVNHGKWKIIREGEVSIPGIK 193


>gi|121606166|ref|YP_983495.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595135|gb|ABM38574.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 211

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 2/160 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A E +  G   A+PT++ Y L     +  A   L  I+     + L     D+S + 
Sbjct: 17  LAQAVELIQRGGIAAVPTDSSYALVCQLDDKAASDNLRRIRGVDGKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
            +A VD     L K   PGP T +L+  S      LS  + KT   RVP   T + L+E 
Sbjct: 77  NYARVDNKQFRLIKAATPGPYTFILE-ASKEVPRRLSHPSRKTIGLRVPDHKTLQALLEL 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           +G PL   +    G+    +    ++  +  E+  IID G
Sbjct: 136 HGGPLLATTLIPRGETESISDPQDITGPLEHELAAIIDAG 175


>gi|313159480|gb|EFR58843.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5]
          Length = 193

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 6/157 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   + AG  I  PT+TV+GL  D+ N  A+ R+Y++K+      ++   +   MV ++
Sbjct: 13  EAVRVMKAGGIILYPTDTVWGLGCDATNAEAVERIYKLKRSENKKSMLVLCASADMVVRY 72

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
            +  P ++  + +L    PLT +L       +        +T   R+P   F ++++   
Sbjct: 73  VNKAPGIAFEVMELA-TSPLTAILP--GAAGVAENLIPEERTLGVRIPDHEFCRRILRGL 129

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           G P+   SAN SG+ +   +  + S  I   +  +++
Sbjct: 130 GRPVVSTSANISGEATPAGLAEV-SREIIDGVDFVVN 165


>gi|302780313|ref|XP_002971931.1| hypothetical protein SELMODRAFT_441705 [Selaginella moellendorffii]
 gi|300160230|gb|EFJ26848.1| hypothetical protein SELMODRAFT_441705 [Selaginella moellendorffii]
          Length = 303

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 21/195 (10%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D G+ + +PT+T+Y +  D  N  AI RLY IK   A  PL         + K+ +  P 
Sbjct: 95  DGGVGV-VPTDTIYAIVCDLHNRAAIERLYRIKDMDAKKPLSILCRSFQDIDKYTTGFPT 153

Query: 80  S-LHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTACFRVP-CGFTKKL 127
           S   +A+   PGP T +L   ++ D+    T          A  K+   R+P     +++
Sbjct: 154 SFFRVARQCLPGPYTFILP--ASKDMPKQCTRFGGSVAASYAPRKSVGVRIPDDSVWREM 211

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILS-----SSICKEIPLIIDGGISKIGLESTIVN 182
                HPL   S  R           I++     SS  + +  I+DGG +++   ST+V+
Sbjct: 212 AGQLEHPLLCTSVRRPADDEWMLDPAIIADTYGVSSGRESVDFIVDGG-TRVANPSTVVD 270

Query: 183 VQCEKKVRILRPGGL 197
           +     V + R  G+
Sbjct: 271 MTGTMPVVLRRGKGV 285


>gi|317050743|ref|YP_004111859.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5]
 gi|316945827|gb|ADU65303.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5]
          Length = 204

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 23/179 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +  PTET+YGL   + +      ++++K RP   PL    +    V+++  + P  L  L
Sbjct: 27  LCFPTETLYGLGGLATSQKVADEVFQVKGRPQGAPLPVLFAHRQQVERYLEI-PAELEVL 85

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET---YGHPLAIPS 139
            + FWPGPLT+ L     T   P  +  L     RV    T  +L++T   Y  P+   S
Sbjct: 86  LEHFWPGPLTVAL-----TARVPFPSGVLDGKG-RVAARITSHRLLKTVIDYAGPMIATS 139

Query: 140 ANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           ANRSG+   +S     H+   +I  + P       S   + ST++    + ++R+ R G
Sbjct: 140 ANRSGEAPAMSAEACLHLQPDAIIMDDP-------STSSVPSTVIGWD-DGELRVYREG 190


>gi|319955258|ref|YP_004166525.1| translation factor sua5 [Cellulophaga algicola DSM 14237]
 gi|319423918|gb|ADV51027.1| translation factor SUA5 [Cellulophaga algicola DSM 14237]
          Length = 206

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 11/165 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVSDIS 68
           ++K    L  G  I  PT+TVYGL  D  N  A   I R+  IK   A    IC  +D+S
Sbjct: 17  IKKVINVLKKGGLIIYPTDTVYGLGCDITNTKALEKIARIKGIKLDKANWSFIC--ADLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +  +   +D  +  + K   PGP T +   L   +  P      KT   RVP     K 
Sbjct: 75  NLSDYVRQIDTPTFKILKRALPGPYTFI---LPGNNNLPKEFKKKKTVGIRVPDNSIAKA 131

Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGG 170
           ++E  G+P+   S     ++   T    ++       + ++IDGG
Sbjct: 132 IVEALGNPIVSTSIRDEDEVLEYTTDPELIFEKWQNLVDIVIDGG 176


>gi|298208805|ref|YP_003716984.1| putative Sua5/yciO/yrdC family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83848732|gb|EAP86601.1| putative Sua5/yciO/yrdC family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 206

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 13/195 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRR---LYEIKKRPAMNPLICHVSDIS 68
           +++    L  G  +  PT+TVYGL  D  N +A+ R   L  +K   A    IC   D+S
Sbjct: 17  IKQVVNALRDGALVIYPTDTVYGLGCDISNVSALERIAKLKNVKLEKANFSFICE--DLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +  +   +D  +  + K   PGP T +   L   +  P      KT   RVP       
Sbjct: 75  NLSDYVKQIDTRTFKILKRCLPGPYTFI---LPGNNNLPNVFKKKKTVGIRVPDNSICNA 131

Query: 127 LIETYGHPLAIPSA-NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L+   G+P+   S  +    I  T    ++     K + ++IDGG     + ST++++  
Sbjct: 132 LVSGLGNPIISTSIRDEDDVIEYTTDPSLILEKWDKHVDIVIDGGYGD-NIASTVIDLTG 190

Query: 186 EKKVRILRPGGLEIE 200
           + +  ++R G   +E
Sbjct: 191 D-EAEVIREGKGSLE 204


>gi|220909107|ref|YP_002484418.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7425]
 gi|219865718|gb|ACL46057.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7425]
          Length = 221

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  +  PT+TVY +  D     A++R+ +IK      PL    S +S +  +A V  
Sbjct: 24  LRAGAVMLYPTDTVYAIGCDLNVKHAVQRVRQIKHLSNDKPLTFLCSSLSNIAHYAYVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLIETYGHPL 135
            +  L +   PGP T    LL  T + P        KT   RVP     + L+E+ G P+
Sbjct: 84  SAYRLMRSLVPGPYTF---LLPATKLVPRLAQEPKRKTTGIRVPDHPVCQSLLESLGSPV 140

Query: 136 AIPSANRSGQISITNVKHILSSS-----ICKEIPLIIDGGISKIGLE-STIVNVQCEKKV 189
            I +A R  +   TN    L S+       + + LI+D G  K G + STI+++     V
Sbjct: 141 -ISTAARLPEEEQTNESVELGSAELFDRFDRLVDLIVDNG-QKTGQQVSTILDLGATPPV 198

Query: 190 RILRPGGLEIETLKR 204
            + +  G E   L++
Sbjct: 199 IVRKGLGWEALPLEK 213


>gi|167035000|ref|YP_001670231.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida GB-1]
 gi|166861488|gb|ABY99895.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida GB-1]
          Length = 221

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y L     +  AI R+  ++     +       D+S + 
Sbjct: 29  IKQAVEIIRKGGVVVYPTDSAYALGCQMGDKNAIERVRRLRGLDKTHNFTLMCCDMSQLG 88

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN-LKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +L+   T ++  L   +  +T   RVP    T  L+ 
Sbjct: 89  LYAKVDTGTFRLLKAHVPGPYTFILN--GTREVPRLLLHDKRRTIGLRVPNHVITLALLA 146

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             G PL   S    G        + +   +   + L+IDGG   +   STI+++  ++
Sbjct: 147 ELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDLK-ASTIIDLSGDE 203


>gi|300114807|ref|YP_003761382.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus watsonii C-113]
 gi|299540744|gb|ADJ29061.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus watsonii C-113]
          Length = 209

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A  FL     I  PT++ Y L     N  A  R+ +++     +       D+S + 
Sbjct: 17  LNQAASFLRQEGLIVYPTDSGYALGCQVGNKAAADRIRQLRGLGNRHEFSLVSRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V   +  L K   PG  T +    +T ++   L     +T   RVP    T+ L+ 
Sbjct: 77  LYAKVGNSAFRLLKALTPGAYTFIFK--ATREVPRRLQDPKRRTIGIRVPANTVTQALLT 134

Query: 130 TYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           T G PL   +    G+ I +T+ + I    +  ++ LIIDGG    G E T V    E  
Sbjct: 135 TLGEPLISSTLILPGEDIPLTDPEEI-RDRMGGQVDLIIDGGYC--GFEPTTVVDLVEDM 191

Query: 189 VRILRPG 195
            +++R G
Sbjct: 192 PKVIREG 198


>gi|239501228|ref|ZP_04660538.1| yrdC domain protein [Acinetobacter baumannii AB900]
          Length = 205

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S + 
Sbjct: 16  IEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD  +  L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNATYRLLKANTPAITTFILSATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ++IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTL-TTTSIVDLSGEH 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIIRRG 197


>gi|123965586|ref|YP_001010667.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123199952|gb|ABM71560.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 193

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 16/199 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A + A E L+ GLPI   T+T+  +      P     +Y+IK+R    PLI   ++   +
Sbjct: 5   ANKLAVEKLNIGLPIIFHTDTLPAIGCL---PKFSEIIYKIKQRDVKKPLILMGAESFQL 61

Query: 71  KK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            +  H +      ++A  +WPGPLT+++ +   +   PL +    T   R+P       +
Sbjct: 62  NEFVHKTAFEDYKYMASRYWPGPLTMIIPISEKS--KPLFSNKNLTLGLRIPNSIMANYL 119

Query: 129 ETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGLESTIVNVQ 184
                PL   SAN SG    TN K I     +  I   +P     G +     STI++  
Sbjct: 120 IKESGPLLTSSANISGLPPSTNAKDISFDLPNVDILGPVPWPKCSGKA-----STIISWV 174

Query: 185 CEKKVRILRPGGLEIETLK 203
             +K +++R G + I  +K
Sbjct: 175 NNEKWKLIREGEVFIPGIK 193


>gi|29349536|ref|NP_813039.1| hypothetical protein BT_4128 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570092|ref|ZP_04847501.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385032|ref|ZP_06994591.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14]
 gi|29341445|gb|AAO79233.1| putative Sua5/yciO/yrdC family protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251840473|gb|EES68555.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262176|gb|EFI05041.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14]
          Length = 204

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 11/189 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK   P  N L     D+S +
Sbjct: 15  LQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPRKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A V      L K   PGP T +   L+ T+  P    N K    R+P     +++  
Sbjct: 75  SEYAKVGNNEFKLMKHNLPGPFTFI---LNGTNRLPKIFRNRKEVGIRMPDNNIIREIAR 131

Query: 130 TYGHPLAIPS--ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-E 186
               P+   +   +    +       ++       + L+IDGGI   G+E + V V+C E
Sbjct: 132 LLDAPIMTTTLPYDEHEDLEYMTDPELIDEKFGDIVDLVIDGGIG--GIEPSTV-VKCTE 188

Query: 187 KKVRILRPG 195
            +  I+R G
Sbjct: 189 DEPEIVRQG 197


>gi|90019673|ref|YP_525500.1| translation factor SUA5 [Saccharophagus degradans 2-40]
 gi|123396836|sp|Q21PU1|RIMN_SACD2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|89949273|gb|ABD79288.1| translation factor SUA5 [Saccharophagus degradans 2-40]
          Length = 191

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK--KHAS 75
            L  G+ IA PTE V+GL  D  N  A+ ++  +KKRP    LI   + I  +    H  
Sbjct: 20  LLQGGV-IAYPTEAVWGLGCDPDNDHAVEKILRLKKRPVHKGLILVAASIEQLDFLLH-D 77

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           ++P      +  WPG  T ++       + P+ T    T   RV      K L E +G P
Sbjct: 78  LEPEYYQKLEASWPGANTWLIP--HKGRVSPMVTGKHATVAVRVSNHPIVKALCEGFGGP 135

Query: 135 LAIPSANRSG 144
           +   SAN  G
Sbjct: 136 IVSTSANPMG 145


>gi|15801912|ref|NP_287932.1| hypothetical protein Z2543 [Escherichia coli O157:H7 EDL933]
 gi|24112666|ref|NP_707176.1| hypothetical protein SF1270 [Shigella flexneri 2a str. 301]
 gi|26247596|ref|NP_753636.1| hypothetical protein c1732 [Escherichia coli CFT073]
 gi|30062790|ref|NP_836961.1| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T]
 gi|74312363|ref|YP_310782.1| hypothetical protein SSON_1876 [Shigella sonnei Ss046]
 gi|82544279|ref|YP_408226.1| hypothetical protein SBO_1799 [Shigella boydii Sb227]
 gi|91210558|ref|YP_540544.1| hypothetical protein UTI89_C1535 [Escherichia coli UTI89]
 gi|110805270|ref|YP_688790.1| hypothetical protein SFV_1280 [Shigella flexneri 5 str. 8401]
 gi|117623527|ref|YP_852440.1| hypothetical protein APECO1_427 [Escherichia coli APEC O1]
 gi|162139712|ref|NP_309866.3| hypothetical protein ECs1839 [Escherichia coli O157:H7 str. Sakai]
 gi|170681810|ref|YP_001743920.1| hypothetical protein EcSMS35_1866 [Escherichia coli SMS-3-5]
 gi|187776059|ref|ZP_02800082.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188025120|ref|ZP_02776177.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189010692|ref|ZP_02808776.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189403568|ref|ZP_02796272.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404340|ref|ZP_02788593.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189405385|ref|ZP_02815073.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189406137|ref|ZP_02826620.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|191171102|ref|ZP_03032653.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11]
 gi|193062588|ref|ZP_03043682.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22]
 gi|194425821|ref|ZP_03058377.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171]
 gi|194436951|ref|ZP_03069050.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1]
 gi|208810838|ref|ZP_03252671.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815519|ref|ZP_03256698.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819462|ref|ZP_03259782.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400954|ref|YP_002270321.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329124|ref|ZP_03445204.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|227886305|ref|ZP_04004110.1| RNA binding protein [Escherichia coli 83972]
 gi|237705290|ref|ZP_04535771.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|291282354|ref|YP_003499172.1| hypothetical protein G2583_1606 [Escherichia coli O55:H7 str.
           CB9615]
 gi|331641825|ref|ZP_08342960.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H736]
 gi|331646588|ref|ZP_08347691.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M605]
 gi|331652304|ref|ZP_08353323.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M718]
 gi|331672792|ref|ZP_08373578.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA280]
 gi|331677045|ref|ZP_08377741.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H591]
 gi|332279543|ref|ZP_08391956.1| yciO [Shigella sp. D9]
 gi|12515530|gb|AAG56548.1|AE005380_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26107998|gb|AAN80198.1|AE016760_57 Protein yciO [Escherichia coli CFT073]
 gi|13361304|dbj|BAB35262.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24051580|gb|AAN42883.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041038|gb|AAP16768.1| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T]
 gi|73855840|gb|AAZ88547.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81245690|gb|ABB66398.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91072132|gb|ABE07013.1| hypothetical protein UTI89_C1535 [Escherichia coli UTI89]
 gi|110614818|gb|ABF03485.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115512651|gb|ABJ00726.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|170519528|gb|ACB17706.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5]
 gi|187769320|gb|EDU33164.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014770|gb|EDU52892.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188998955|gb|EDU67941.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359972|gb|EDU78391.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366283|gb|EDU84699.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370440|gb|EDU88856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189376257|gb|EDU94673.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|190908834|gb|EDV68422.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11]
 gi|192931710|gb|EDV84310.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22]
 gi|194415876|gb|EDX32142.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171]
 gi|194423934|gb|EDX39922.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1]
 gi|208724344|gb|EDZ74052.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732167|gb|EDZ80855.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739585|gb|EDZ87267.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162354|gb|ACI39787.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772038|gb|ACI84331.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|209772040|gb|ACI84332.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|209772042|gb|ACI84333.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|209772044|gb|ACI84334.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|209772046|gb|ACI84335.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|217317563|gb|EEC25991.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|226900047|gb|EEH86306.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836509|gb|EEJ46975.1| RNA binding protein [Escherichia coli 83972]
 gi|281600689|gb|ADA73673.1| hypothetical protein SFxv_1441 [Shigella flexneri 2002017]
 gi|290762227|gb|ADD56188.1| hypothetical protein G2583_1606 [Escherichia coli O55:H7 str.
           CB9615]
 gi|320176681|gb|EFW51719.1| YciO family [Shigella dysenteriae CDC 74-1112]
 gi|320187505|gb|EFW62191.1| YciO family [Shigella flexneri CDC 796-83]
 gi|320195720|gb|EFW70345.1| YciO family [Escherichia coli WV_060327]
 gi|320199302|gb|EFW73893.1| YciO family [Escherichia coli EC4100B]
 gi|326343314|gb|EGD67081.1| YciO family [Escherichia coli O157:H7 str. 1044]
 gi|330911130|gb|EGH39640.1| YciO family [Escherichia coli AA86]
 gi|331038623|gb|EGI10843.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H736]
 gi|331045340|gb|EGI17467.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M605]
 gi|331050582|gb|EGI22640.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M718]
 gi|331070013|gb|EGI41382.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA280]
 gi|331075734|gb|EGI47032.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H591]
 gi|332101895|gb|EGJ05241.1| yciO [Shigella sp. D9]
          Length = 218

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 29  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 88

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 89  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 146

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P+   S    G     +    +   + K++ LII GG
Sbjct: 147 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 187


>gi|172036646|ref|YP_001803147.1| putative Sua5/YciO/YrdC/YwlC [Cyanothece sp. ATCC 51142]
 gi|171698100|gb|ACB51081.1| putative Sua5/YciO/YrdC/YwlC [Cyanothece sp. ATCC 51142]
          Length = 221

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 12/206 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + + C+ L  G  +  PT+TVY +  D  + +A++R+ ++K+     PL    S +S + 
Sbjct: 21  IDEICDSLRKGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIS 80

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128
           ++A V   +  + K   PGP T    LL  T   P  + +   KT   RVP     + ++
Sbjct: 81  EYAGVTDEAYRIMKRVIPGPYTF---LLPATKAVPKLVMSPKRKTTGIRVPDHPICQAIL 137

Query: 129 ETYGHPLAIPSA---NRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
               +P+   SA   +  G+  +I   K  L   +  ++ +IID  +      STI+++ 
Sbjct: 138 TELNNPIISTSAHLPDEEGEFPTIGLEKARLFDILESQVDMIIDNSLEPGFDVSTILDMT 197

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL 210
            +    I+R  GL  E L+  ++VE+
Sbjct: 198 SDPP-SIIR-QGLGWEALQNWVTVEV 221


>gi|220935185|ref|YP_002514084.1| SUA5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996495|gb|ACL73097.1| SUA5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 205

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 72/173 (41%), Gaps = 8/173 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + +  G  I  PT++ Y L     N T + R+  I++    +       D+S + 
Sbjct: 17  IRQAVDVIRDGGVIVYPTDSCYALGCGIGNKTGMERIRRIRQLDDNHHFTLVCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLI 128
            +A VD  +  L K   PGP T    LL  T   P  L  A  KT   RVP    T+ L+
Sbjct: 77  TYAKVDNTAYRLLKNLTPGPYTF---LLKATHEVPRRLQHAKRKTIGLRVPDHAITQALL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              G PL   +    G     +  + +   +   + LI+  G    G+E T V
Sbjct: 134 AELGEPLMSTTLQLPGDHLPLSDPYDIEERLSAHVDLILLAG--SCGVEPTTV 184


>gi|330500990|ref|YP_004377859.1| SUA5/YciO/YrdC domain-containing protein [Pseudomonas mendocina
           NK-01]
 gi|328915276|gb|AEB56107.1| SUA5/YciO/YrdC domain-containing protein [Pseudomonas mendocina
           NK-01]
          Length = 185

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 13/139 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++    +  G  IA PTE V+GL  D  N  A+ RL  +K+RP    LI    DI    
Sbjct: 7   IQQTARVVREGGVIAYPTEAVWGLGCDPWNEEAVDRLLALKERPMHKGLIVVADDIEQFD 66

Query: 72  --KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------C 121
              +   D     LA   WPGP T ++       +    T    T   RV         C
Sbjct: 67  FLLNDLPDVWQERLAG-SWPGPNTWLVP--HQNRLPEWVTGEHDTVALRVSDHPLVRALC 123

Query: 122 GFTKKLIETYGHPLAIPSA 140
            +T  LI T  +P   PSA
Sbjct: 124 RYTGPLISTSANPAGRPSA 142


>gi|255318610|ref|ZP_05359841.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter radioresistens
           SK82]
 gi|262379163|ref|ZP_06072319.1| yrdC domain-containing protein [Acinetobacter radioresistens SH164]
 gi|255304292|gb|EET83478.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter radioresistens
           SK82]
 gi|262298620|gb|EEY86533.1| yrdC domain-containing protein [Acinetobacter radioresistens SH164]
          Length = 205

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 10/194 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +      SD+S +  +
Sbjct: 18  QAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCSDLSDIATY 77

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIE 129
           A VD     L K   P   T +L   S      +HP      KT   R+P     + L++
Sbjct: 78  AKVDNAMYRLLKANTPAITTFILPATSEVPRRLMHP----KRKTIGLRIPSNPICQMLLQ 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    GQ    +  + +   + K I + IDGG   +   ++IV++  E   
Sbjct: 134 ELGEPLLTSTLILPGQEDPLDDPYEIEQQLGKRIDVFIDGGFGMLS-TTSIVDLSGENP- 191

Query: 190 RILRPGGLEIETLK 203
            I+R G  ++   +
Sbjct: 192 EIIRYGEGDVSAFE 205


>gi|313207355|ref|YP_004046532.1| translation factor sua5 [Riemerella anatipestifer DSM 15868]
 gi|312446671|gb|ADQ83026.1| translation factor SUA5 [Riemerella anatipestifer DSM 15868]
 gi|315023250|gb|EFT36260.1| Sua5 YciO YrdC YwlC family protein [Riemerella anatipestifer RA-YM]
          Length = 203

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 13/196 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSD 66
           N +++  + LD G  I  P++TVY L  D  N  A+ +L  +KK     A   +IC  +D
Sbjct: 15  NLIKEVIKTLDNGGLIIYPSDTVYALGCDINNIKAMEKLAALKKIKLEKAHFSIIC--ND 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           +S +      +D     L K   PG  T +L+        PL+    KT   RVP     
Sbjct: 73  LSHLSSFTKPIDNSVFRLLKSHIPGAFTFILEANKNL---PLAYKGHKTVGIRVPDHPIP 129

Query: 126 KLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +LI E  G P+A  S     + I  +    +++      + ++ID G     + STIV++
Sbjct: 130 QLIVEKLGRPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVASTIVDL 188

Query: 184 QCEKKVRILRPGGLEI 199
                  I+R G  E+
Sbjct: 189 -TSGVAEIIRQGKGEL 203


>gi|240119018|ref|ZP_04733080.1| hypothetical protein NgonPID_11272 [Neisseria gonorrhoeae PID1]
          Length = 189

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 9/194 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 1   MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60

Query: 61  ICHVSDISMVKKHASVDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACF 117
           I  + +     +     P      + +  WP P T +  LL+ + + P L          
Sbjct: 61  IV-IGNQLEQLQPLLQMPFENIQTMLRNEWPAPKTFL--LLAKSGVLPALRGKRRSKLAV 117

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP     ++L +  G PL   S NR+G+ +    + +      +++  I+ G I +   
Sbjct: 118 RVPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKS 175

Query: 177 ESTIVNVQCEKKVR 190
            S I++ +  K++R
Sbjct: 176 PSQIIDGETGKRLR 189


>gi|146305099|ref|YP_001185564.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas mendocina
           ymp]
 gi|212288213|sp|A4XNB6|RIMN_PSEMY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|145573300|gb|ABP82832.1| translation factor SUA5 [Pseudomonas mendocina ymp]
          Length = 185

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 61/147 (41%), Gaps = 27/147 (18%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A R  CE    G  IA PTE V+GL  D  N  A+ RL  +K+RP    LI    DI 
Sbjct: 8   QQAARVVCE----GGVIAYPTEAVWGLGCDPWNEVAVDRLLALKERPVHKGLILVADDIE 63

Query: 69  MVKKHASVDPLSLHLAKLF-------WPGPLTLVL---DLLST--TDIHPLSTANLKTA- 115
                   D L   L  ++       WPGP T ++   D L    T +H   +  L+ + 
Sbjct: 64  ------QFDFLLDDLPAIWQERLAASWPGPNTWLVPHQDRLPAWITGVH--DSVALRVSD 115

Query: 116 --CFRVPCGFTKKLIETYGHPLAIPSA 140
               R  C  T  LI T  +P   P+A
Sbjct: 116 HPLVRALCRLTGPLISTSANPAGRPAA 142


>gi|67920201|ref|ZP_00513721.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501]
 gi|67857685|gb|EAM52924.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501]
          Length = 217

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 14/203 (6%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           C  L  G  +  PT+TVY +  D  + +A++R+ ++K+     PL    S +S + K+A 
Sbjct: 21  CSALRQGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIAKYAG 80

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLIETYG 132
           V+  +  + K   PGP T    LL  T   P  + +   K+   RVP     + +++   
Sbjct: 81  VEDEAYRVMKRLIPGPYTF---LLPATKAVPKLVMSPKRKSTGIRVPDHPICQAILQGLE 137

Query: 133 HPLAIPSA---NRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLE-STIVNVQCEK 187
           +P+   SA   +  G+     ++ + L   +  ++ +IID  +   G E STI+++  + 
Sbjct: 138 NPIVSTSAHLPDEDGEFPTLGLEKVKLFDILENQVDIIIDNSLEP-GFEVSTILDMTSDP 196

Query: 188 KVRILRPGGLEIETLKRAISVEL 210
              I+R  GL  E L+  + +++
Sbjct: 197 P-SIIR-QGLGWEELQNWVKLQV 217


>gi|116072664|ref|ZP_01469930.1| hypothetical protein BL107_09136 [Synechococcus sp. BL107]
 gi|116064551|gb|EAU70311.1| hypothetical protein BL107_09136 [Synechococcus sp. BL107]
          Length = 202

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 66/132 (50%), Gaps = 13/132 (9%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L A   + IPT+T+ GLAV  +N   I   + +K+RPA  PLI   + +  + +   VD 
Sbjct: 19  LQASEAVIIPTDTLPGLAVLPQNAETI---WTLKQRPADKPLILMGATVDALLE--GVDS 73

Query: 79  LSLHLAKLF----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
              + AK      WPG +TLVL       +  L+       C R+P C  T+ L+ ++  
Sbjct: 74  RCHNDAKTLAAKHWPGAITLVLPARGPY-VDYLNPGGSNIGC-RIPACAVTQNLL-SFSG 130

Query: 134 PLAIPSANRSGQ 145
           PLA  SAN SGQ
Sbjct: 131 PLATSSANPSGQ 142


>gi|228472867|ref|ZP_04057624.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275449|gb|EEK14226.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 207

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLICHVSDIS 68
           ++K  + L  G  I  PT+TVYGL  D  +  A+ R+ +   IK   A    IC  +D+S
Sbjct: 17  IQKVVDCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLDKANFSFIC--ADLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +  +   +D  +  L K   PG  T +   L  ++  P      KT   R+P     + 
Sbjct: 75  NLSDYVKQIDTTTFKLLKRALPGAYTFI---LPGSNNLPKEFKKKKTVGIRIPDNTIART 131

Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           L+E  G+P+   S     ++   T    ++      ++ ++IDGG     + ST++++
Sbjct: 132 LVEKLGNPIVSSSIYDEDEVLEYTTDPELIFEKWQDKVDIVIDGGYGD-NVASTVIDL 188


>gi|239999974|ref|ZP_04719898.1| hypothetical protein Ngon3_10911 [Neisseria gonorrhoeae 35/02]
 gi|240017646|ref|ZP_04724186.1| hypothetical protein NgonFA_10873 [Neisseria gonorrhoeae FA6140]
 gi|240114151|ref|ZP_04728641.1| hypothetical protein NgonM_11394 [Neisseria gonorrhoeae MS11]
 gi|240116791|ref|ZP_04730853.1| hypothetical protein NgonPID1_11236 [Neisseria gonorrhoeae PID18]
 gi|240122444|ref|ZP_04735400.1| hypothetical protein NgonP_00611 [Neisseria gonorrhoeae PID332]
 gi|240126706|ref|ZP_04739592.1| hypothetical protein NgonSK_10938 [Neisseria gonorrhoeae SK-92-679]
 gi|254493456|ref|ZP_05106627.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441583|ref|ZP_05795399.1| hypothetical protein NgonDG_10945 [Neisseria gonorrhoeae DGI2]
 gi|268595781|ref|ZP_06129948.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268600226|ref|ZP_06134393.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602466|ref|ZP_06136633.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604733|ref|ZP_06138900.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681032|ref|ZP_06147894.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268685287|ref|ZP_06152149.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291044953|ref|ZP_06570662.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226512496|gb|EEH61841.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268549170|gb|EEZ44588.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268584357|gb|EEZ49033.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586597|gb|EEZ51273.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588864|gb|EEZ53540.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268621316|gb|EEZ53716.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625571|gb|EEZ57971.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291011847|gb|EFE03843.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317165270|gb|ADV08811.1| hypothetical protein NGTW08_1856 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 200

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 11/195 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACF 117
           I  + +     +     P      + +  WP P T +  LL+ + + P L          
Sbjct: 72  IV-IGNQLEQLQPLLQMPFENIQTMLRNEWPAPKTFL--LLAKSGVLPALRGKRRSKLAV 128

Query: 118 RVP--CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
           RVP   G  ++L +  G PL   S NR+G+ +    + +      +++  I+ G I +  
Sbjct: 129 RVPDHTG-ARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQK 185

Query: 176 LESTIVNVQCEKKVR 190
             S I++ +  K++R
Sbjct: 186 SPSQIIDGETGKRLR 200


>gi|89108113|ref|AP_001893.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|110641496|ref|YP_669226.1| hypothetical protein ECP_1314 [Escherichia coli 536]
 gi|157155810|ref|YP_001462564.1| hypothetical protein EcE24377A_1466 [Escherichia coli E24377A]
 gi|157160772|ref|YP_001458090.1| hypothetical protein EcHS_A1376 [Escherichia coli HS]
 gi|162135901|ref|NP_415783.6| predicted RNA binding protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|168758351|ref|ZP_02783358.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|170020369|ref|YP_001725323.1| hypothetical protein EcolC_2361 [Escherichia coli ATCC 8739]
 gi|170080944|ref|YP_001730264.1| hypothetical protein ECDH10B_1382 [Escherichia coli str. K-12
           substr. DH10B]
 gi|187733520|ref|YP_001880097.1| hypothetical protein SbBS512_E1491 [Shigella boydii CDC 3083-94]
 gi|188495376|ref|ZP_03002646.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638]
 gi|191166644|ref|ZP_03028472.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A]
 gi|193069999|ref|ZP_03050947.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019]
 gi|194435054|ref|ZP_03067293.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012]
 gi|195939200|ref|ZP_03084582.1| hypothetical protein EscherichcoliO157_22736 [Escherichia coli
           O157:H7 str. EC4024]
 gi|209918507|ref|YP_002292591.1| hypothetical protein ECSE_1316 [Escherichia coli SE11]
 gi|215486562|ref|YP_002328993.1| hypothetical protein E2348C_1457 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218549042|ref|YP_002382833.1| hypothetical protein EFER_1690 [Escherichia fergusonii ATCC 35469]
 gi|218553819|ref|YP_002386732.1| hypothetical protein ECIAI1_1286 [Escherichia coli IAI1]
 gi|218558252|ref|YP_002391165.1| hypothetical protein ECS88_1401 [Escherichia coli S88]
 gi|218689257|ref|YP_002397469.1| hypothetical protein ECED1_1473 [Escherichia coli ED1a]
 gi|218694838|ref|YP_002402505.1| hypothetical protein EC55989_1424 [Escherichia coli 55989]
 gi|218699974|ref|YP_002407603.1| hypothetical protein ECIAI39_1603 [Escherichia coli IAI39]
 gi|218704790|ref|YP_002412309.1| hypothetical protein ECUMN_1565 [Escherichia coli UMN026]
 gi|238900500|ref|YP_002926296.1| hypothetical protein BWG_1096 [Escherichia coli BW2952]
 gi|253773736|ref|YP_003036567.1| hypothetical protein ECBD_2356 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161346|ref|YP_003044454.1| hypothetical protein ECB_01241 [Escherichia coli B str. REL606]
 gi|254792855|ref|YP_003077692.1| hypothetical protein ECSP_1785 [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018487|ref|ZP_05432352.1| hypothetical protein ShiD9_06202 [Shigella sp. D9]
 gi|256023025|ref|ZP_05436890.1| hypothetical protein E4_06609 [Escherichia sp. 4_1_40B]
 gi|260843615|ref|YP_003221393.1| hypothetical protein ECO103_1429 [Escherichia coli O103:H2 str.
           12009]
 gi|260867716|ref|YP_003234118.1| hypothetical protein ECO111_1647 [Escherichia coli O111:H- str.
           11128]
 gi|261224249|ref|ZP_05938530.1| hypothetical protein EscherichiacoliO157_06545 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257495|ref|ZP_05950028.1| hypothetical protein EscherichiacoliO157EcO_16982 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293404808|ref|ZP_06648800.1| hypothetical protein ECGG_00131 [Escherichia coli FVEC1412]
 gi|293409651|ref|ZP_06653227.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B354]
 gi|293414599|ref|ZP_06657248.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B185]
 gi|293433628|ref|ZP_06662056.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B088]
 gi|298380449|ref|ZP_06990048.1| hypothetical protein ECFG_00142 [Escherichia coli FVEC1302]
 gi|300820148|ref|ZP_07100317.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1]
 gi|300822570|ref|ZP_07102709.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7]
 gi|300896125|ref|ZP_07114679.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1]
 gi|300904136|ref|ZP_07122009.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1]
 gi|300919447|ref|ZP_07135948.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1]
 gi|300926648|ref|ZP_07142425.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1]
 gi|300927773|ref|ZP_07143337.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1]
 gi|300940070|ref|ZP_07154680.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1]
 gi|300951923|ref|ZP_07165727.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1]
 gi|300955868|ref|ZP_07168207.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1]
 gi|300971790|ref|ZP_07171624.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1]
 gi|300982414|ref|ZP_07176111.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1]
 gi|301019491|ref|ZP_07183660.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1]
 gi|301046929|ref|ZP_07194043.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1]
 gi|301304782|ref|ZP_07210888.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1]
 gi|301327009|ref|ZP_07220296.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1]
 gi|301647239|ref|ZP_07247058.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1]
 gi|306813710|ref|ZP_07447891.1| hypothetical protein ECNC101_17397 [Escherichia coli NC101]
 gi|307137904|ref|ZP_07497260.1| hypothetical protein EcolH7_07197 [Escherichia coli H736]
 gi|307309979|ref|ZP_07589629.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli W]
 gi|309793260|ref|ZP_07687687.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7]
 gi|312966805|ref|ZP_07781023.1| yrdC domain protein [Escherichia coli 2362-75]
 gi|331657314|ref|ZP_08358276.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA206]
 gi|331662678|ref|ZP_08363601.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA143]
 gi|331682752|ref|ZP_08383371.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H299]
 gi|84027907|sp|P0AFR5|YCIO_ECOL6 RecName: Full=Uncharacterized protein yciO
 gi|84027908|sp|P0AFR4|YCIO_ECOLI RecName: Full=Uncharacterized protein yciO
 gi|84027909|sp|P0AFR6|YCIO_SHIFL RecName: Full=Uncharacterized protein yciO
 gi|85674890|dbj|BAA14801.2| conserved hypothetical protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87081864|gb|AAC74349.2| predicted RNA binding protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110343088|gb|ABG69325.1| probable translation factor YciO [Escherichia coli 536]
 gi|157066452|gb|ABV05707.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli HS]
 gi|157077840|gb|ABV17548.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E24377A]
 gi|169755297|gb|ACA77996.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli ATCC 8739]
 gi|169888779|gb|ACB02486.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187430512|gb|ACD09786.1| Sua5/YciO/YrdC/YwlC family protein [Shigella boydii CDC 3083-94]
 gi|188490575|gb|EDU65678.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638]
 gi|189354813|gb|EDU73232.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|190903293|gb|EDV63014.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A]
 gi|192956752|gb|EDV87207.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019]
 gi|194416711|gb|EDX32841.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012]
 gi|209911766|dbj|BAG76840.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215264634|emb|CAS09005.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218351570|emb|CAU97282.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|218356583|emb|CAQ89206.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
 gi|218360587|emb|CAQ98145.1| conserved hypothetical protein [Escherichia coli IAI1]
 gi|218365021|emb|CAR02724.1| conserved hypothetical protein [Escherichia coli S88]
 gi|218369960|emb|CAR17734.1| conserved hypothetical protein [Escherichia coli IAI39]
 gi|218426821|emb|CAR07671.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|218431887|emb|CAR12772.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|222033071|emb|CAP75811.1| Uncharacterized protein yciO [Escherichia coli LF82]
 gi|238860471|gb|ACR62469.1| conserved protein [Escherichia coli BW2952]
 gi|242377044|emb|CAQ31768.1| conserved protein [Escherichia coli BL21(DE3)]
 gi|253324780|gb|ACT29382.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973247|gb|ACT38918.1| hypothetical protein ECB_01241 [Escherichia coli B str. REL606]
 gi|253977461|gb|ACT43131.1| hypothetical protein ECD_01241 [Escherichia coli BL21(DE3)]
 gi|254592255|gb|ACT71616.1| predicted RNA-binding protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257758762|dbj|BAI30259.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257764072|dbj|BAI35567.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|260449603|gb|ACX40025.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli DH1]
 gi|281178455|dbj|BAI54785.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|291324447|gb|EFE63869.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B088]
 gi|291427016|gb|EFF00043.1| hypothetical protein ECGG_00131 [Escherichia coli FVEC1412]
 gi|291434657|gb|EFF07630.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B185]
 gi|291470119|gb|EFF12603.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B354]
 gi|294493370|gb|ADE92126.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli IHE3034]
 gi|298277891|gb|EFI19405.1| hypothetical protein ECFG_00142 [Escherichia coli FVEC1302]
 gi|300301155|gb|EFJ57540.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1]
 gi|300309296|gb|EFJ63816.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1]
 gi|300317270|gb|EFJ67054.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1]
 gi|300359989|gb|EFJ75859.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1]
 gi|300399232|gb|EFJ82770.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1]
 gi|300403901|gb|EFJ87439.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1]
 gi|300408752|gb|EFJ92290.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1]
 gi|300413469|gb|EFJ96779.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1]
 gi|300417349|gb|EFK00660.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1]
 gi|300448867|gb|EFK12487.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1]
 gi|300455105|gb|EFK18598.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1]
 gi|300464166|gb|EFK27659.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1]
 gi|300524986|gb|EFK46055.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7]
 gi|300527303|gb|EFK48365.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1]
 gi|300839903|gb|EFK67663.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1]
 gi|300846357|gb|EFK74117.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1]
 gi|301074601|gb|EFK89407.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1]
 gi|305852984|gb|EFM53429.1| hypothetical protein ECNC101_17397 [Escherichia coli NC101]
 gi|306909697|gb|EFN40191.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli W]
 gi|307553325|gb|ADN46100.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli ABU 83972]
 gi|307627159|gb|ADN71463.1| hypothetical protein UM146_10450 [Escherichia coli UM146]
 gi|308122847|gb|EFO60109.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7]
 gi|309701565|emb|CBJ00872.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|312288269|gb|EFR16171.1| yrdC domain protein [Escherichia coli 2362-75]
 gi|312945901|gb|ADR26728.1| hypothetical protein NRG857_06500 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313649456|gb|EFS13887.1| yrdC domain protein [Shigella flexneri 2a str. 2457T]
 gi|315060518|gb|ADT74845.1| hypothetical protein ECW_m1359 [Escherichia coli W]
 gi|315135903|dbj|BAJ43062.1| hypothetical protein ECDH1ME8569_1206 [Escherichia coli DH1]
 gi|315254774|gb|EFU34742.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 85-1]
 gi|315289105|gb|EFU48503.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 110-3]
 gi|315294758|gb|EFU54101.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 153-1]
 gi|315297256|gb|EFU56536.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 16-3]
 gi|315619345|gb|EFU99889.1| yrdC domain protein [Escherichia coli 3431]
 gi|320181707|gb|EFW56618.1| YciO family [Shigella boydii ATCC 9905]
 gi|320189982|gb|EFW64634.1| YciO family [Escherichia coli O157:H7 str. EC1212]
 gi|320637161|gb|EFX06987.1| hypothetical protein ECO5101_20125 [Escherichia coli O157:H7 str.
           G5101]
 gi|320642527|gb|EFX11775.1| hypothetical protein ECO9389_21424 [Escherichia coli O157:H- str.
           493-89]
 gi|320647880|gb|EFX16588.1| hypothetical protein ECO2687_09354 [Escherichia coli O157:H- str. H
           2687]
 gi|320653482|gb|EFX21587.1| hypothetical protein ECO7815_06412 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659182|gb|EFX26771.1| hypothetical protein ECO5905_15803 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320663975|gb|EFX31162.1| hypothetical protein ECOSU61_13093 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323162372|gb|EFZ48227.1| yrdC domain protein [Escherichia coli E128010]
 gi|323168240|gb|EFZ53925.1| yrdC domain protein [Shigella sonnei 53G]
 gi|323172377|gb|EFZ58014.1| yrdC domain protein [Escherichia coli LT-68]
 gi|323179781|gb|EFZ65342.1| yrdC domain protein [Escherichia coli 1180]
 gi|323185574|gb|EFZ70935.1| yrdC domain protein [Escherichia coli 1357]
 gi|323378919|gb|ADX51187.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli KO11]
 gi|323937588|gb|EGB33856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E1520]
 gi|323942381|gb|EGB38551.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E482]
 gi|323947452|gb|EGB43456.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H120]
 gi|323949130|gb|EGB45022.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H252]
 gi|323953862|gb|EGB49663.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H263]
 gi|323962567|gb|EGB58147.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H489]
 gi|323973493|gb|EGB68679.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA007]
 gi|324006123|gb|EGB75342.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 57-2]
 gi|324011322|gb|EGB80541.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 60-1]
 gi|324018953|gb|EGB88172.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 117-3]
 gi|324113139|gb|EGC07114.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia fergusonii B253]
 gi|324117540|gb|EGC11446.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E1167]
 gi|325497459|gb|EGC95318.1| hypothetical protein ECD227_1556 [Escherichia fergusonii ECD227]
 gi|326341073|gb|EGD64866.1| YciO family [Escherichia coli O157:H7 str. 1125]
 gi|331055562|gb|EGI27571.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA206]
 gi|331061100|gb|EGI33064.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA143]
 gi|331080383|gb|EGI51562.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H299]
 gi|332091657|gb|EGI96737.1| yrdC domain protein [Shigella boydii 5216-82]
 gi|332094838|gb|EGI99882.1| yrdC domain protein [Shigella boydii 3594-74]
 gi|332098121|gb|EGJ03094.1| yrdC domain protein [Shigella dysenteriae 155-74]
 gi|332342859|gb|AEE56193.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332757919|gb|EGJ88246.1| yrdC domain protein [Shigella flexneri 4343-70]
 gi|332759350|gb|EGJ89658.1| yrdC domain protein [Shigella flexneri 2747-71]
 gi|332760362|gb|EGJ90652.1| yrdC domain protein [Shigella flexneri K-671]
 gi|332767502|gb|EGJ97696.1| yrdC domain protein [Shigella flexneri 2930-71]
 gi|333004582|gb|EGK24106.1| yrdC domain protein [Shigella flexneri VA-6]
 gi|333005653|gb|EGK25171.1| yrdC domain protein [Shigella flexneri K-218]
 gi|333019096|gb|EGK38386.1| yrdC domain protein [Shigella flexneri K-304]
          Length = 206

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P+   S    G     +    +   + K++ LII GG
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175


>gi|301022797|ref|ZP_07186639.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1]
 gi|299881098|gb|EFI89309.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1]
          Length = 206

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYSFVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQTLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P+   S    G     +    +   + K++ LII GG
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175


>gi|134095363|ref|YP_001100438.1| hypothetical protein HEAR2179 [Herminiimonas arsenicoxydans]
 gi|133739266|emb|CAL62315.1| Conserved hypothetical protein, putative translation factor
           [Herminiimonas arsenicoxydans]
          Length = 207

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E +  G  +A+PT++ Y L     +  A+ RL  I+     + L     D+S + ++
Sbjct: 19  QAVEVIKGGGIVALPTDSCYALVCQLDDKDAVARLRRIRNVDDKHHLTLLCRDLSEIAQY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A +D     L K   PG  T +L+  +T ++   LS  + KT   RVP       ++E  
Sbjct: 79  AKIDNQQYRLLKAATPGAYTFILE--ATKEVPRRLSHPSRKTIGLRVPENRIVHAVLEEL 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             PL   +    G+         +   + K + L+IDGG
Sbjct: 137 AQPLLGTTLILPGEDEPLTDPDDVRDRLSKVVDLVIDGG 175


>gi|311279824|ref|YP_003942055.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae SCF1]
 gi|308749019|gb|ADO48771.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae SCF1]
          Length = 206

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYAYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 AIGEPMLSTSLMLPGSDFTESDPDEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDAP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|218247419|ref|YP_002372790.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257061244|ref|YP_003139132.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8802]
 gi|218167897|gb|ACK66634.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8801]
 gi|256591410|gb|ACV02297.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8802]
          Length = 197

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 12/139 (8%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  ++ PT+TV  LA   +N   I   +  KKRP   PLI   + I  + ++    P  L
Sbjct: 16  GQVVSFPTDTVPALAALPQNAALI---FATKKRPPDKPLILMGASIEALWQYIQGTPEEL 72

Query: 82  HL----AKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            L    A+ +WPG LTLVL    L    ++PL   +  T   R+P     + I      L
Sbjct: 73  ALWQQIAESYWPGSLTLVLPASSLVPAAMNPL---DPTTIGVRIPNHPIAQAILAETGCL 129

Query: 136 AIPSANRSGQISITNVKHI 154
           A  SANRSGQ  +  +  I
Sbjct: 130 ATTSANRSGQPPLETMTAI 148


>gi|126660837|ref|ZP_01731931.1| hypothetical protein CY0110_27268 [Cyanothece sp. CCY0110]
 gi|126617888|gb|EAZ88663.1| hypothetical protein CY0110_27268 [Cyanothece sp. CCY0110]
          Length = 217

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 12/202 (5%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           C+ L  G  +  PT+TVY +  D  + +A++R+ ++K+     PL    S +S +  +A 
Sbjct: 21  CDSLRKGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIADYAG 80

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLIETYG 132
           V   +  + K   PGP T    LL  T   P  + +   KT   RVP     + ++    
Sbjct: 81  VTDEAYRIMKRVIPGPYTF---LLPATKAVPKLVMSPKRKTTGIRVPDHPICQAILTELN 137

Query: 133 HPLAIPSA---NRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +P+   SA   +  G+  +I   K  L   +  ++ +IID  +      STI+++  +  
Sbjct: 138 NPIISTSAHLPDEEGEFPTIGLEKARLFDILESQVDMIIDNSLEPGFDVSTILDMTSDPP 197

Query: 189 VRILRPGGLEIETLKRAISVEL 210
             I+R  GL  E L+  ++VE+
Sbjct: 198 -SIIR-QGLGWEALQNWVTVEV 217


>gi|157145596|ref|YP_001452915.1| hypothetical protein CKO_01342 [Citrobacter koseri ATCC BAA-895]
 gi|157082801|gb|ABV12479.1| hypothetical protein CKO_01342 [Citrobacter koseri ATCC BAA-895]
          Length = 206

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T D+   L     KT   RVP       L+E
Sbjct: 77  TYSFVDNVAFRLIKNNTPGNYTFILK--GTKDVPRRLLQEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDSP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|325860005|ref|ZP_08173132.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola CRIS
          18C-A]
 gi|327313739|ref|YP_004329176.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola F0289]
 gi|325482531|gb|EGC85537.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola CRIS
          18C-A]
 gi|326944894|gb|AEA20779.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola F0289]
          Length = 189

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDIS 68
          + ++KA + +  G  I  PT+TV+G+  D+ N  A+ ++Y +K+R     LIC V SD  
Sbjct: 5  DDIKKAIDVMKNGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVDSDDR 64

Query: 69 MVKKHASVDPLSLHLAKLFWPGPLTLVLD 97
          + +   SV  ++  L       P TL+LD
Sbjct: 65 LQRYVRSVPDVAWQLIDAV-DKPTTLILD 92


>gi|305667010|ref|YP_003863297.1| putative Sua5/yciO/yrdC family protein [Maribacter sp. HTCC2170]
 gi|88709245|gb|EAR01479.1| putative Sua5/yciO/yrdC family protein [Maribacter sp. HTCC2170]
          Length = 206

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 13/191 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDI 67
           A+ +  + L  G  I  PT+TVY L  D  N  A+ +L  IK      A    +C  +D+
Sbjct: 16  AISRVVQSLRKGGLIIYPTDTVYSLGCDITNTRALEKLARIKGIKLEKANWSFVC--ADL 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +  +   +D     + K   PGP T +   L  ++  P      KT   RVP     K
Sbjct: 74  SNLSDYVRQIDTSVFKILKRALPGPYTFI---LPGSNSLPKVFKKKKTIGIRVPNNSIPK 130

Query: 126 KLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L++  G+P+   S +   ++   T    ++       + ++IDGG     + ST++++ 
Sbjct: 131 TLVQELGNPIVSTSIHDEDEVLEYTTDPELIHEKWGNIVDVVIDGGYGG-NIASTVIDL- 188

Query: 185 CEKKVRILRPG 195
            + +V ++R G
Sbjct: 189 SQDEVEVVREG 199


>gi|149372161|ref|ZP_01891431.1| translation factor [unidentified eubacterium SCB49]
 gi|149354928|gb|EDM43490.1| translation factor [unidentified eubacterium SCB49]
          Length = 205

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 31/216 (14%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKR 54
           + + I D+N     +++    +  G  +  P++TVY L  D  N +A  RL +   +K  
Sbjct: 3   EFIKIYDNNPNEKDIKRVVSIIKKGGLVIYPSDTVYALGCDVTNKSAYERLAKLKGVKPE 62

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL- 112
            A   ++C   D+S +  +   +D  +  L K  +PGP T +L           S  NL 
Sbjct: 63  KANFSIVCE--DLSNLSDYVKQIDGTTFKLLKRAFPGPYTFILP----------SNNNLT 110

Query: 113 ------KTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIP 164
                 K    RVP    T+ +I+  G+P+   S     ++   T    ++     K + 
Sbjct: 111 GYFKKKKEVGIRVPDNTITQAIIKELGNPIVSTSIKDEDEVLEYTTDPELIFEKWEKLVD 170

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILR-PGGLEI 199
           +++DGG     + STI+++   + V +    G LEI
Sbjct: 171 VVVDGGYGD-NVASTIIDITSGEPVLVREGKGSLEI 205


>gi|15677963|ref|NP_275135.1| hypothetical protein NMB2150 [Neisseria meningitidis MC58]
 gi|161871012|ref|YP_001600192.1| hypothetical protein NMCC_2108 [Neisseria meningitidis 053442]
 gi|81784069|sp|Q9JXA4|RIMN_NEIMB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288211|sp|A9M4K6|RIMN_NEIM0 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288268|sp|A1KWL6|RIMN_NEIMF RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288269|sp|A1IP83|RIMN_NEIMA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|7227408|gb|AAF42458.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|161596565|gb|ABX74225.1| putative translation factor [Neisseria meningitidis 053442]
 gi|261393462|emb|CAX51108.1| putative RNA-binding protein [Neisseria meningitidis 8013]
          Length = 189

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +I   +
Sbjct: 6   IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 65

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
               ++    +   +L  + +  WP P T +L   S   +  L          RVP    
Sbjct: 66  QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 124

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L +    PL   S NR+G+ +    + +      +++  I+ G I +    S I++ 
Sbjct: 125 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 182

Query: 184 QCEKKVR 190
           +  K++R
Sbjct: 183 ETGKRLR 189


>gi|119775262|ref|YP_928002.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella amazonensis SB2B]
 gi|119767762|gb|ABM00333.1| translation factor SUA5 [Shewanella amazonensis SB2B]
          Length = 206

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 8/189 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L +G  I  PT++ Y L     +  A+ R+  I++    +       D+S +  +
Sbjct: 19  QAVNILRSGGVIVYPTDSGYALGCLIGDKNAMERIVRIRQMEQDHHFSLMCRDLSEIATY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFTK-KLIETY 131
           A V+  +  L K   PGP T +    +T ++   L     KT   RVP       L+E  
Sbjct: 79  ARVENQAFRLVKHCTPGPYTFIFK--ATKEVPRRLQNDKKKTIGIRVPDNVIALALLEAL 136

Query: 132 GHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           G PL   S    GQ  + ++ +HI    +  ++  I++GG   +G   T V    E    
Sbjct: 137 GEPLMSTSLVMPGQEFAESDPEHI-RDLLEHQVEAILNGGY--LGESPTTVVDMSEDTFE 193

Query: 191 ILRPGGLEI 199
           +LR G  +I
Sbjct: 194 VLREGAGDI 202


>gi|255535332|ref|YP_003095703.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium
           3519-10]
 gi|255341528|gb|ACU07641.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium
           3519-10]
          Length = 205

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 13/197 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVS 65
            N + +  + L  G  I  P++TVY L  +  +  A+ +L +IKK     A   +IC+  
Sbjct: 16  ENLIDEVVKTLQNGGIIIYPSDTVYALGCNIFDIRAMEKLAQIKKIKLEKAQFSIICN-- 73

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           D+  +      +D       K   PGP T +L+   +    PL+    KT   RVP    
Sbjct: 74  DLGHLSGFTRPIDTPVFRFLKSKIPGPFTFILEAGKSL---PLAYKGNKTVGIRVPDHVI 130

Query: 125 KKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            +LI E  GHP+A  S     + I  +    +++      + ++ID G     + STIV+
Sbjct: 131 PQLIVEKLGHPIASTSVKDDDEVIEYSTDPELIAEKYDNLVDIVIDSGYGD-NVASTIVD 189

Query: 183 VQCEKKVRILRPGGLEI 199
           +   +   I+R G  E+
Sbjct: 190 LTSGEP-EIVRQGKGEV 205


>gi|83647680|ref|YP_436115.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396]
 gi|83635723|gb|ABC31690.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396]
          Length = 205

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 10/195 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E + +G  I  PT++ Y L     +  A  R+  I++    +       D+S + 
Sbjct: 17  VRQAVEIIHSGGVIVYPTDSGYALGCAIGDKNAADRIKSIRRLDDKHNFTLVCRDLSDIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD  +  L K   PG  T +L   S      +HP      +    RVP     + L
Sbjct: 77  TYAKVDNSTYRLLKNHTPGAYTFILTATSEVPRRLLHP----KRRQIGIRVPDNRIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+       + +   +   + LIIDGG    G+E T V    + 
Sbjct: 133 LEELGAPLMSSTLIMPGEEMPMTDPYEIRQMLEHAVDLIIDGGFC--GMEPTSVVDLTDD 190

Query: 188 KVRILRPGGLEIETL 202
              ILR G  ++ + 
Sbjct: 191 APVILREGAGDVSSF 205


>gi|189468028|ref|ZP_03016813.1| hypothetical protein BACINT_04422 [Bacteroides intestinalis DSM
           17393]
 gi|189436292|gb|EDV05277.1| hypothetical protein BACINT_04422 [Bacteroides intestinalis DSM
           17393]
          Length = 204

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQQIVDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A VD  +  L K   PG  T +L+   TT + P    N K    R+P     +++  
Sbjct: 75  SEYAKVDNNTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMPDNAIIQEIAR 131

Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
               P+    +P          T+   ++       + L+IDGGI   G ES+ + V C 
Sbjct: 132 VLDAPIMTTTLPHEEHEDMEYCTD-PELIDEKFGDLVDLVIDGGIG--GTESSTI-VDCT 187

Query: 187 K-KVRILRPG 195
             +  I+R G
Sbjct: 188 NGETEIVRQG 197


>gi|325578257|ref|ZP_08148392.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159993|gb|EGC72122.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC
           33392]
          Length = 207

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A+V  ++  L K   PG  T +L   +T ++   L T+  KT   RVP       L++
Sbjct: 77  TYATVSNVAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNQIALDLLK 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P            ++  L     +++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPDNEHMTYSDPEEIRECLE----RQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|169796996|ref|YP_001714789.1| hypothetical protein ABAYE2997 [Acinetobacter baumannii AYE]
 gi|184157091|ref|YP_001845430.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU]
 gi|213156599|ref|YP_002318260.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii AB0057]
 gi|215484458|ref|YP_002326691.1| yrdC domain protein [Acinetobacter baumannii AB307-0294]
 gi|260555712|ref|ZP_05827932.1| yrdC domain-containing protein [Acinetobacter baumannii ATCC 19606]
 gi|301348043|ref|ZP_07228784.1| yrdC domain protein [Acinetobacter baumannii AB056]
 gi|301510847|ref|ZP_07236084.1| yrdC domain protein [Acinetobacter baumannii AB058]
 gi|301594335|ref|ZP_07239343.1| yrdC domain protein [Acinetobacter baumannii AB059]
 gi|332852084|ref|ZP_08433911.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013150]
 gi|332867482|ref|ZP_08437635.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013113]
 gi|332872667|ref|ZP_08440635.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6014059]
 gi|169149923|emb|CAM87817.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|183208685|gb|ACC56083.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU]
 gi|193076588|gb|ABO11251.2| hypothetical protein A1S_0813 [Acinetobacter baumannii ATCC 17978]
 gi|213055759|gb|ACJ40661.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii AB0057]
 gi|213987507|gb|ACJ57806.1| yrdC domain protein [Acinetobacter baumannii AB307-0294]
 gi|260410623|gb|EEX03921.1| yrdC domain-containing protein [Acinetobacter baumannii ATCC 19606]
 gi|322506990|gb|ADX02444.1| putative translation factor (SUA5) [Acinetobacter baumannii 1656-2]
 gi|323516857|gb|ADX91238.1| putative translation factor (SUA5) [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729456|gb|EGJ60795.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013150]
 gi|332733899|gb|EGJ65044.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013113]
 gi|332739196|gb|EGJ70055.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6014059]
          Length = 205

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S + 
Sbjct: 16  IEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD  +  L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ++IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTL-TTTSIVDLSGEH 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIIRRG 197


>gi|87300985|ref|ZP_01083827.1| hypothetical protein WH5701_06035 [Synechococcus sp. WH 5701]
 gi|87284856|gb|EAQ76808.1| hypothetical protein WH5701_06035 [Synechococcus sp. WH 5701]
          Length = 213

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS--MVKKHA 74
           E++ AG P   PT+T+  LA       A  +++E+K RP+  PLI   S+          
Sbjct: 24  EWILAGGPAIFPTDTLPALAALP---AAAGQIWELKSRPSNKPLILMGSEPETLFAALEL 80

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           S  P  L LA+  WPG LTLVL         + P   A       R+P C   ++L+   
Sbjct: 81  SPRPQWLELAERCWPGALTLVLPARGAVVAALQPGVVAAEARLGLRIPACERARELLRRT 140

Query: 132 GHPLAIPSANRSG 144
           G PLA  SANRSG
Sbjct: 141 G-PLATTSANRSG 152


>gi|300865647|ref|ZP_07110419.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336348|emb|CBN55569.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 197

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 25/189 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83
           I+ PT+TV  LAV    P A   ++  KKR    PLI   +    +  + +  P  L + 
Sbjct: 20  ISFPTDTVPALAV---RPEASELIFTTKKRDREKPLILMGATPEHLWPYITGTPEQLQIW 76

Query: 84  ---AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138
              A   WPG LTLVL   ++  + P ++  +  T   RVP     +K+++  G PLA  
Sbjct: 77  QQIAASHWPGALTLVLP--ASPKVPPAMNPTDPTTIGLRVPNLAIAQKILQQTG-PLATT 133

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-------GLESTIVNVQCEKKVRI 191
           SAN SGQ  +       ++ I +  P ++    S++       GL ST+          I
Sbjct: 134 SANLSGQPPLET-----AAEIQQNFPEVLTLEASELKTTTTASGLPSTVAK-WSGNSWEI 187

Query: 192 LRPGGLEIE 200
           LR G +E++
Sbjct: 188 LRQGAVELK 196


>gi|329894846|ref|ZP_08270646.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC3088]
 gi|328922740|gb|EGG30074.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC3088]
          Length = 173

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 20/189 (10%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  IA PTE V+GL  D  N  A+ RL  +K+RP    LI  +++  +        
Sbjct: 1   MLARGGVIAYPTEGVWGLGCDPLNKRAVERLLALKERPWQKGLIVALANEGVADTLLRTL 60

Query: 78  PLSLHLA-KLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGHP 134
           P     A K  WPGP T    L+   D+ P  ++  +   AC        + L    G  
Sbjct: 61  PQDRKNAIKATWPGPNTW---LVPHDDLWPSWVTGESDFIACRLSAYAVVRDLARAAGGA 117

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           +   SAN +GQ+     + +      + +  I+ G             VQ  +K  ++R 
Sbjct: 118 IISTSANPAGQVPAMTAQAV-RQYFGRSVDFIMPG------------RVQGLQKPSVIRH 164

Query: 195 GGLEIETLK 203
            GL  ETL+
Sbjct: 165 -GLTGETLR 172


>gi|56478937|ref|YP_160526.1| putative translation factor YrdC/SUA5 [Aromatoleum aromaticum EbN1]
 gi|56314980|emb|CAI09625.1| putative translation factor YrdC/SUA5 [Aromatoleum aromaticum EbN1]
          Length = 209

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 18/178 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVY---GLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +R+A E + +G  +  PT++ Y   GLA D+     IRR+  + +R     L+C   D+S
Sbjct: 17  IRQAAEIMRSGGLVTFPTDSAYALGGLAGDASVLLRIRRIRGVDERHHFT-LMCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +  +A VD +   L K   PGP T +L+    L    +HP      KT   RVP     
Sbjct: 74  EIATYARVDNMQYRLLKATTPGPYTFILEGTKELPRRVLHP----KRKTIGLRVPDHPVV 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             L+     P+   +    G+ + +T+ + I    + K++ L+I+ G    G E+T V
Sbjct: 130 AALLAELDEPILTSTLLLPGEDLPLTDAEEI-RDRMEKQVELVIEAGFC--GPEATTV 184


>gi|126668173|ref|ZP_01739134.1| hypothetical protein MELB17_23665 [Marinobacter sp. ELB17]
 gi|126627322|gb|EAZ97958.1| hypothetical protein MELB17_23665 [Marinobacter sp. ELB17]
          Length = 190

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 17/193 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD   L  A   L  G  +A PTE V+GL  D  N  A++R+ ++K+RP    +I   +
Sbjct: 7   LTDWQ-LHCARRTLHQGGVLAYPTEAVWGLGCDPWNQVAVQRILDLKQRPVHKGMILVAA 65

Query: 66  DISMVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLK----TACFR 118
            +  +     ++PL   L   A+  WPGP+T +L      D+H      ++    +   R
Sbjct: 66  SVEQIV--FLLNPLPQDLQQRARQHWPGPVTCLL-----PDVHQQVPEWVRGEHSSIAVR 118

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           V      K L    G PL   S N +G+    +   +       ++  ++ G +      
Sbjct: 119 VSAHPVVKALCNAVGSPLVSTSCNPAGRAPARSPWQV-QGYFHGQLDWVVPGALGGNRQP 177

Query: 178 STIVNVQCEKKVR 190
           S I+++   +++R
Sbjct: 178 SRIIDIVTGQQLR 190


>gi|126657314|ref|ZP_01728473.1| hypothetical protein CY0110_00105 [Cyanothece sp. CCY0110]
 gi|126621301|gb|EAZ92013.1| hypothetical protein CY0110_00105 [Cyanothece sp. CCY0110]
          Length = 199

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 12/136 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I+ PT+TV  LA     P +   ++  KKRP   PLI   S    + K+    P    + 
Sbjct: 19  ISFPTDTVPALAAL---PESASLIFATKKRPPDKPLILMGSSSEAIWKYVKGTPEEFRIW 75

Query: 85  KL----FWPGPLTLVL--DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
           +     +WPG LTLVL    L    I+PL  +   T   R+P     + I      LA  
Sbjct: 76  EKIVNKYWPGQLTLVLPASELVPQGINPLDPS---TIGVRIPNSIIAQNILKQTGCLATT 132

Query: 139 SANRSGQISITNVKHI 154
           SAN SG+  I N+  I
Sbjct: 133 SANLSGEPPIENLSDI 148


>gi|296135809|ref|YP_003643051.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12]
 gi|294339974|emb|CAZ88337.1| putative RNA-binding protein, yciO [Thiomonas sp. 3As]
 gi|295795931|gb|ADG30721.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12]
          Length = 211

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   L +G   AIPT++ Y L     +  A++RL +I++    + L    SD+S + 
Sbjct: 17  IKQAAAVLHSGGVAAIPTDSSYALVCHLDDKAAVQRLRQIRQVDERHHLTLLCSDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A VD     L +   PGP T +L+  +T ++   +S  + KT   RVP       L+ 
Sbjct: 77  NYARVDNRQYRLIRACTPGPYTFILE--ATKEVPRRVSHPSRKTIGVRVPQNAVAHTLLV 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
               PL   +    G     N    +   +  ++ L++D G
Sbjct: 135 EMAQPLLATTLILPGDEHALNDAADIRDQLEHQVDLVLDAG 175


>gi|303257826|ref|ZP_07343836.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium
           1_1_47]
 gi|302859429|gb|EFL82510.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium
           1_1_47]
          Length = 207

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G   A+ T+T + L     +  A+ ++  I++             +S + 
Sbjct: 17  IEQAAKLLTKGQVAAVSTDTGFSLVCRLDDKEALDKIRLIRQLSEKKHFTLFCDSLSQMS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFT-KKLIE 129
           K A V+     +AK   PGP T +L+  +T ++   LS  + KT   RVP       L+E
Sbjct: 77  KLARVNNTGYRMAKSVTPGPYTFILE--ATKEVPRRLSHPSKKTIGLRVPSNKALHALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+    +    +   I  ++  I+D G S IG ++T+V++  ++  
Sbjct: 135 KIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG-DTTVVDLSGDEP- 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|254428427|ref|ZP_05042134.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
 gi|196194596|gb|EDX89555.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
          Length = 207

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 11/196 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP--LICHVSDISM 69
           +R+A + + +G  IA PT+T Y L        A+ RL  +++    +   L+CH  D+S 
Sbjct: 17  IRQAVDVIRSGGLIAYPTDTTYALGCGIGEKAALDRLIRLRQLDKKHEFTLLCH--DLSA 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKL 127
           +  +A VD     L K   PG  T +L    TT++   L     +T   RVP     + L
Sbjct: 75  LAIYAKVDNPDYRLLKAHTPGAYTFILQ--GTTEVPRRLMHPKKRTIGIRVPDHAICQAL 132

Query: 128 IETYGHPLAIPSANR-SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +  +G P+   + +  + +  +T+ + +    +   + L+IDGG      E+T++++   
Sbjct: 133 LAEHGEPIMTSTCHLPNDEFPLTDPQDV-RDFLENHVDLVIDGGFCGT-TETTVISLSEG 190

Query: 187 KKVRILRPGGLEIETL 202
           +   ++R G   I+ +
Sbjct: 191 EGPVVVREGAGPIDAI 206


>gi|308390230|gb|ADO32550.1| hypothetical protein NMBB_2449 [Neisseria meningitidis alpha710]
 gi|325129260|gb|EGC52099.1| protein RimN [Neisseria meningitidis OX99.30304]
 gi|325135372|gb|EGC57993.1| YrdC domain, putative [Neisseria meningitidis M0579]
 gi|325203123|gb|ADY98577.1| protein RimN [Neisseria meningitidis M01-240149]
 gi|325207044|gb|ADZ02497.1| protein RimN [Neisseria meningitidis M04-240196]
 gi|325208992|gb|ADZ04444.1| protein RimN [Neisseria meningitidis NZ-05/33]
          Length = 200

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +I   +
Sbjct: 17  IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
               ++    +   +L  + +  WP P T +L   S   +  L          RVP    
Sbjct: 77  QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L +    PL   S NR+G+ +    + +      +++  I+ G I +    S I++ 
Sbjct: 136 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193

Query: 184 QCEKKVR 190
           +  K++R
Sbjct: 194 ETGKRLR 200


>gi|240081874|ref|ZP_04726417.1| hypothetical protein NgonF_11291 [Neisseria gonorrhoeae FA19]
 gi|240127157|ref|ZP_04739818.1| hypothetical protein NgonS_00622 [Neisseria gonorrhoeae SK-93-1035]
 gi|212288270|sp|Q5F5I5|RIMN_NEIG1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 189

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 7/193 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 1   MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118
           I   + +  ++    +   ++  + +  WP P T +  LL+ + + P L          R
Sbjct: 61  IVIGNQLEQLQPLLQMPSENIQTMLRNEWPAPKTFL--LLAKSGVLPALRGKRRSKLAVR 118

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     ++L +  G PL   S NR+G+ +    + +      +++  I+ G I +    
Sbjct: 119 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSP 176

Query: 178 STIVNVQCEKKVR 190
           S I++ +  K++R
Sbjct: 177 SQIIDGETGKRLR 189


>gi|333029883|ref|ZP_08457944.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM
           18011]
 gi|332740480|gb|EGJ70962.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM
           18011]
          Length = 203

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 21/209 (10%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAM 57
           +M + DSN     +++  + L+ G  I  PT+T+Y +        AI ++ EIK   P  
Sbjct: 2   LMKLYDSNNDPQKIQQVIDILNDGGIIIYPTDTMYAIGCHCMKERAIEQICEIKGIDPRK 61

Query: 58  N--PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           N   LIC+  D+S + ++A +      + K   PGP T +   L+ T+  P    N K  
Sbjct: 62  NNLSLICY--DLSTISEYAKMSNTVFKIMKANLPGPFTFI---LNGTNKLPKIFRNRKEV 116

Query: 116 CFRVP-----CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             R+P        TK L E       +P         +TN   ++     K + L+IDGG
Sbjct: 117 GIRMPNNEIIMDITKAL-EFPIMTTTVPLGENEDTGFLTN-PELIYEKFGKIVDLVIDGG 174

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEI 199
                  STIV+   +  V I R G  E+
Sbjct: 175 TGDYS-ASTIVDCTGD-YVEIARQGKGEL 201


>gi|260582127|ref|ZP_05849921.1| SUA5 protein [Haemophilus influenzae NT127]
 gi|260094759|gb|EEW78653.1| SUA5 protein [Haemophilus influenzae NT127]
          Length = 207

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K    +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLTEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A+V+  +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYATVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P+   + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|330811305|ref|YP_004355767.1| hypothetical protein PSEBR_a4356 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379413|gb|AEA70763.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 209

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y +     +  A+ R+  +++    +      SD+S + 
Sbjct: 17  IKQAVEIIRGGGVVVYPTDSSYAIGCQIGDKNAVERVRRLRQLDDKHNFALICSDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A +D  +  L K   PGP T +L+         +HP      +T   RVP       L
Sbjct: 77  LFAKIDTGTFRLLKAHLPGPYTFILNATREVPRLLLHP----KKRTIGLRVPSHPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+       + +   +  ++ LIIDGG   +   ST++N+  + 
Sbjct: 133 LAELGEPLMSVTLIMPGESEPLTDPYEMRQILEHQVDLIIDGGFGGMS-ASTVINL-ADG 190

Query: 188 KVRILRPG 195
           + +++R G
Sbjct: 191 EPQVVRVG 198


>gi|254804056|ref|YP_003082277.1| putative translation factor [Neisseria meningitidis alpha14]
 gi|254667598|emb|CBA03357.1| putative translation factor [Neisseria meningitidis alpha14]
 gi|316984513|gb|EFV63479.1| ribosome maturation factor [Neisseria meningitidis H44/76]
 gi|325127245|gb|EGC50183.1| protein RimN [Neisseria meningitidis N1568]
 gi|325139460|gb|EGC62000.1| protein RimN [Neisseria meningitidis CU385]
 gi|325201186|gb|ADY96641.1| protein RimN [Neisseria meningitidis H44/76]
          Length = 200

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +I   +
Sbjct: 17  IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
               ++    +   +L  + +  WP P T +L   S   +  L          RVP    
Sbjct: 77  QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L +    PL   S NR+G+ +    + +      +++  I+ G I +    S I++ 
Sbjct: 136 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193

Query: 184 QCEKKVR 190
           +  K++R
Sbjct: 194 ETGKRLR 200


>gi|224538268|ref|ZP_03678807.1| hypothetical protein BACCELL_03159 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520128|gb|EEF89233.1| hypothetical protein BACCELL_03159 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 204

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 17/192 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L     D+S +
Sbjct: 15  LQQVVDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++A VD  +  L K   PG  T +L+   TT + P    N K    R+P      +I+ 
Sbjct: 75  SEYAKVDNNTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNAIIQE 128

Query: 131 YGHPLAIPSANRS------GQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
               L  P    +        I       ++       + L+IDGGI   G E STIV+ 
Sbjct: 129 IARILDAPIMTTTLPHEAHEDIEYCTDPELIDEKFGDLVDLVIDGGIG--GTEFSTIVDC 186

Query: 184 QCEKKVRILRPG 195
               ++ ++R G
Sbjct: 187 T-SGEIEVIRQG 197


>gi|302879854|ref|YP_003848418.1| SUA5/yciO/yrdC domain [Gallionella capsiferriformans ES-2]
 gi|302582643|gb|ADL56654.1| SUA5/yciO/yrdC domain [Gallionella capsiferriformans ES-2]
          Length = 184

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
          + R    +L +G  IA PTE+ YGL  D  N +A+R+L  +K+RP    LI   SD   +
Sbjct: 7  SFRSIAAYLKSGGLIAYPTESCYGLGCDPLNRSAVRKLLRLKQRPQAKGLILIASDYRQL 66

Query: 71 KKH 73
           ++
Sbjct: 67 ARY 69


>gi|256424924|ref|YP_003125577.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588]
 gi|256039832|gb|ACU63376.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588]
          Length = 189

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 16/194 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N +  + + L +G  I  PT+T++G+  D+ +  A+++++ +K RP    L+  ++D+  
Sbjct: 6   NDISASLQVLRSGGLILYPTDTIWGIGCDATDEAAVKKVFTLKDRPEAKSLVILLADVRD 65

Query: 70  VKKHASVDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
           + K+ +  P S  +A +   +  P T++ +     D+ P    +  T   R V   F + 
Sbjct: 66  LLKYVA-HP-SPEIADILAGFDRPTTVIYE--GALDLAPNVINSDGTVAIRIVKDTFCRH 121

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQC 185
           LI+    PL   SAN SGQ S         ++  +  P II+G    +   +      Q 
Sbjct: 122 LIKRLRKPLVSTSANLSGQPS--------PATFAEVSPEIINGVDYVVSYRQDDTTPAQA 173

Query: 186 EKKVRILRPGGLEI 199
            + +++L+ G +++
Sbjct: 174 SRIIKLLKDGSVQV 187


>gi|291326241|ref|ZP_06123711.2| Sua5/YciO/YrdC/YwlC family protein [Providencia rettgeri DSM 1131]
 gi|291315158|gb|EFE55611.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rettgeri DSM 1131]
          Length = 220

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ E L+ G  I  PT++ Y +        A++R+  I++  A +       D+S + 
Sbjct: 31  ISQSVEILNKGGVIVYPTDSGYAIGCRLEEKDALQRICRIRQLDANHNFTLMCRDLSELS 90

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD     L K   PG  T +  L +T ++   L     KT   RVP     + L+E
Sbjct: 91  NYAHVDNTVFRLIKNNTPGNYTFI--LRATKEVPRRLMNEKRKTIGLRVPSNPIARDLLE 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL   S    G     +    +   + K++ L+I GG   IG + T V
Sbjct: 149 AVGEPLMSTSLIMPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTV 198


>gi|317048305|ref|YP_004115953.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. At-9b]
 gi|316949922|gb|ADU69397.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. At-9b]
          Length = 206

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A ++L+ G  I  PT++ Y L        A+ R+  I++    +       D+S + 
Sbjct: 17  VNQAVDYLNKGGVIVYPTDSGYALGCRLEEKNAMERICRIRQLDGHHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD  +  + K   PG  T +L   +T ++   L     KT   RVP       L+E
Sbjct: 77  TYSQVDNSAFRIIKNNTPGSYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPVALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
               P+   S    G     +    +  SI K + LIIDGG   +G + +T+V++  +  
Sbjct: 135 ALNEPMMSTSLMLPGNDFTESDPEEIQHSIGKLVDLIIDGG--TLGQQPTTVVDLTSDAP 192

Query: 189 VRILRPG 195
           + I+R G
Sbjct: 193 I-IVREG 198


>gi|198284016|ref|YP_002220337.1| SUA5/yciO/yrdC domain [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666682|ref|YP_002426660.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|198248537|gb|ACH84130.1| SUA5/yciO/yrdC domain [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518895|gb|ACK79481.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 186

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
          +R+    +  G  IA PTE V+GL  D R   A+ R+  +K RP    ++      +  +
Sbjct: 11 IRRGVAHIRRGGVIAYPTEGVWGLGCDPRRRRALHRILALKGRPRFKGVLLVAGRTAETR 70

Query: 72 KHASVDPLSLHLAKLFWPGPLTLVL 96
          ++ S       L   FWPG  TLVL
Sbjct: 71 RYWSAQGTDQALLARFWPG-TTLVL 94


>gi|121635793|ref|YP_976038.1| hypothetical protein NMC2128 [Neisseria meningitidis FAM18]
 gi|218767259|ref|YP_002341771.1| hypothetical protein NMA0237 [Neisseria meningitidis Z2491]
 gi|120867499|emb|CAM11276.1| hypothetical protein NMC2128 [Neisseria meningitidis FAM18]
 gi|121051267|emb|CAM07543.1| hypothetical protein NMA0237 [Neisseria meningitidis Z2491]
 gi|254671287|emb|CBA08623.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|254672629|emb|CBA06396.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|319411465|emb|CBY91881.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594]
 gi|325131234|gb|EGC53946.1| protein RimN [Neisseria meningitidis M6190]
 gi|325133318|gb|EGC55984.1| protein RimN [Neisseria meningitidis M13399]
 gi|325137408|gb|EGC59996.1| protein RimN [Neisseria meningitidis ES14902]
 gi|325143385|gb|EGC65714.1| protein RimN [Neisseria meningitidis 961-5945]
 gi|325143552|gb|EGC65873.1| protein RimN [Neisseria meningitidis M01-240013]
 gi|325199224|gb|ADY94680.1| protein RimN [Neisseria meningitidis G2136]
          Length = 200

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +I   +
Sbjct: 17  IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
               ++    +   +L  + +  WP P T +L   S   +  L          RVP    
Sbjct: 77  QFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L +    PL   S NR+G+ +    + +      +++  I+ G I +    S I++ 
Sbjct: 136 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193

Query: 184 QCEKKVR 190
           +  K++R
Sbjct: 194 ETGKRLR 200


>gi|59802252|ref|YP_208964.1| hypothetical protein NGO1940 [Neisseria gonorrhoeae FA 1090]
 gi|194099801|ref|YP_002002936.1| hypothetical protein NGK_2311 [Neisseria gonorrhoeae NCCP11945]
 gi|240013077|ref|ZP_04719990.1| hypothetical protein NgonD_00200 [Neisseria gonorrhoeae DGI18]
 gi|240122267|ref|ZP_04735229.1| hypothetical protein NgonPI_10985 [Neisseria gonorrhoeae PID24-1]
 gi|268597971|ref|ZP_06132138.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268685513|ref|ZP_06152375.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|293398025|ref|ZP_06642231.1| translation factor [Neisseria gonorrhoeae F62]
 gi|59719147|gb|AAW90552.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193935091|gb|ACF30915.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268551759|gb|EEZ46778.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268625797|gb|EEZ58197.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291611971|gb|EFF41040.1| translation factor [Neisseria gonorrhoeae F62]
          Length = 200

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 9/194 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118
           I   + +  ++    +   ++  + +  WP P T +  LL+ + + P L          R
Sbjct: 72  IVIGNQLEQLQPLLQMPSENIQTMLRNEWPAPKTFL--LLAKSGVLPALRGKRRSKLAVR 129

Query: 119 VP--CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           VP   G  ++L +  G PL   S NR+G+ +    + +      +++  I+ G I +   
Sbjct: 130 VPDHTG-ARRLCQALGMPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKS 186

Query: 177 ESTIVNVQCEKKVR 190
            S I++ +  K++R
Sbjct: 187 PSQIIDGETGKRLR 200


>gi|296313775|ref|ZP_06863716.1| protein RimN [Neisseria polysaccharea ATCC 43768]
 gi|296839703|gb|EFH23641.1| protein RimN [Neisseria polysaccharea ATCC 43768]
          Length = 200

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +I   +
Sbjct: 17  IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
               ++    +   +L  + +  WP P T +L   S   +  L          RVP    
Sbjct: 77  QFEQLQPLLQMPSENLQAMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L +    PL   S NR+G+ +    + +      +++  I+ G I +    S I++ 
Sbjct: 136 ARRLCQALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193

Query: 184 QCEKKVR 190
           +  K++R
Sbjct: 194 ETGKRLR 200


>gi|260768729|ref|ZP_05877663.1| YrdC family protein [Vibrio furnissii CIP 102972]
 gi|260616759|gb|EEX41944.1| YrdC family protein [Vibrio furnissii CIP 102972]
 gi|315180432|gb|ADT87346.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio furnissii NCTC 11218]
          Length = 206

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S +  +
Sbjct: 19  QAVAIIRNGGVVVYPTDSGYALGCQLENKHALERICQIRRLDDKHNFTLMCRDLSELSLY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       L+E  
Sbjct: 79  ARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPNNQIALDLLEAM 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL   S    G  +  +    +   +   + +I++GG   +G + T V    + ++++
Sbjct: 137 GEPLMSTSLILPGNETTESDPEEIRDRLEHAVDVILNGGY--LGEQPTTVVDFSDDEMQV 194

Query: 192 LRPG 195
           +R G
Sbjct: 195 VRFG 198


>gi|330470257|ref|YP_004408000.1| hypothetical protein VAB18032_01580 [Verrucosispora maris
           AB-18-032]
 gi|328813228|gb|AEB47400.1| hypothetical protein VAB18032_01580 [Verrucosispora maris
           AB-18-032]
          Length = 238

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 89/198 (44%), Gaps = 13/198 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +P++T Y +A+   N  + + +  + +RP   P+    S +  V+ +  ++ 
Sbjct: 31  LNQGGFVLLPSDTCYSIALVPHNEDSWKFINSLLRRPVDRPVSVAFSGLDQVRGYLELNA 90

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFRVPCGFTKKLIETYGH- 133
            +LHL + F PGP+TLV    +    H  +  +     +T  FR+P    ++ + ++   
Sbjct: 91  TALHLVERFTPGPITLVCP--ANQRAHKFAAKSTGSPDRTLGFRIPDSKIERDVASHARW 148

Query: 134 PLAIPSANRSGQISITNVKHILS------SSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           P+   +        + +    L       +++       ++G  S     ST+V V    
Sbjct: 149 PITTTAVRDKRDEPVQSFDEALKIVTAAAAAVGSARWHAVEGRDSFYSKHSTVVRVDQSG 208

Query: 188 KVRILRPGGLEIETLKRA 205
           +V ++R G +  ET++++
Sbjct: 209 EVGLIREGDIPFETIRQS 226


>gi|282899761|ref|ZP_06307724.1| Sua5/YciO/YrdC/YwlC [Cylindrospermopsis raciborskii CS-505]
 gi|281195376|gb|EFA70310.1| Sua5/YciO/YrdC/YwlC [Cylindrospermopsis raciborskii CS-505]
          Length = 217

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 14/191 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V  +A V  
Sbjct: 24  LSGGAVMLYPTDTVYAIGCDLNAKSAVERVKKIKRLANDKPLTFLCPSLSRVATYAFVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPC-GFTKKLIETYGHPL 135
           ++  + K   PGP T    LL  T + P    N   KT   RVP       L+E+ G+P+
Sbjct: 84  IAYRIMKSLIPGPYTF---LLPATKLVPRLVQNPKRKTTGIRVPNHHLCLALLESLGNPI 140

Query: 136 AIPSA--------NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              SA        + +  I I   K  L   +   + +IID G       STI+++   +
Sbjct: 141 ISTSAHLPLHDMDDLNVDIDIHPSKMDLFDRLDSLVDIIIDTGEEPKNQVSTILDLTDNQ 200

Query: 188 KVRILRPGGLE 198
            +   +  G E
Sbjct: 201 PIITRKGMGWE 211


>gi|227538481|ref|ZP_03968530.1| possible translation factor, Sua5 [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241667|gb|EEI91682.1| possible translation factor, Sua5 [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 191

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 6/193 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+  D   + KA E L  G  I  PT+T++G+  D+ NP A+ R+ ++K R     +I  
Sbjct: 1   MTPIDREDINKALETLKNGGLILYPTDTIWGIGCDATNPEAVDRVIQLKGRSKEKSMIVL 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122
           + + + +  + +  P   +    +   PLT+V    +  ++   + A   +   R V   
Sbjct: 61  LHNENQLAGYVNDIPEVAYQLIEYTEHPLTIVYS--NAKNLAANAIAEDGSIGIRIVNHP 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTI 180
           F  +L++ +  P+   SAN SG+ S      I    I   +   +  G   IG    STI
Sbjct: 119 FCTQLLQRFRKPIISTSANISGEPSAKTFGDI-DQKIKDGVDYTVQFGQKDIGAGKASTI 177

Query: 181 VNVQCEKKVRILR 193
           + +    K   +R
Sbjct: 178 MKLDPSGKFEFIR 190


>gi|330998752|ref|ZP_08322480.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329576249|gb|EGG57765.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 207

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G   A+ T+T + L     +  A+ ++  I++             +S + 
Sbjct: 17  IEQAAKLLTKGQLAAVSTDTGFSLVCRLDDKEALDKIRLIRQLSEKKHFTLFCDSLSQMS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFT-KKLIE 129
           K A V+     +AK   PGP T +L+  +T ++   LS  + KT   RVP       L+E
Sbjct: 77  KLARVNNTGYRMAKSVTPGPYTFILE--ATKEVPRRLSHPSKKTIGLRVPSNKALHALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+    +    +   I  ++  I+D G S IG ++T+V++  ++  
Sbjct: 135 KIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG-DTTVVDLSGDEP- 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|262089750|gb|ACY24844.1| Sua5/YciO/YrdC/YwlC family protein [uncultured organism]
          Length = 173

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 23/177 (12%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83
           +A PTE V+GL  +  +  A+ RL ++K+RP    LI   +DIS+       +P   HL 
Sbjct: 7   VAYPTEAVWGLGCNPFSEDAVMRLLDMKQRPVNKGLILLAADISL------FEPFIYHLN 60

Query: 84  ------AKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV---PCGFTKKLIETYGH 133
                  K  WPGP+T    L+    + P   T +      RV   P      L   +G 
Sbjct: 61  DIQRQRIKKTWPGPVTW---LIPNNGLAPKWITGDYTGVALRVTDHPV--AAGLSRAFGA 115

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           P+   S N  G+    +   +       E+  I  G + K    S I ++   + VR
Sbjct: 116 PIVSTSCNLQGRAPARSGFDV-HRYFGDELDAITSGAVGKRANPSEIRDLMTGEVVR 171


>gi|18977588|ref|NP_578945.1| hypothetical protein PF1216 [Pyrococcus furiosus DSM 3638]
 gi|18893305|gb|AAL81340.1| hypothetical protein PF1216 [Pyrococcus furiosus DSM 3638]
          Length = 49

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
          +A PTET+YGL  D+ N  A++R++E K RP  N LI +++  S ++
Sbjct: 1  MAFPTETIYGLGDDALNGEAVKRIFEAKGRPTDNLLIVYMAKFSQLR 47


>gi|299771354|ref|YP_003733380.1| yrdC domain protein [Acinetobacter sp. DR1]
 gi|298701442|gb|ADI92007.1| yrdC domain protein [Acinetobacter sp. DR1]
          Length = 205

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S + 
Sbjct: 16  ISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD  +  L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ++IV++  E 
Sbjct: 132 LQELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTL-TSTSIVDLSGEH 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIIRRG 197


>gi|221068835|ref|ZP_03544940.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1]
 gi|220713858|gb|EED69226.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1]
          Length = 214

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L  G  +A+PT++ Y L     +  A+ R+  I++    + L     D+S + 
Sbjct: 17  IKQAAEMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +A VD     L KL  PGP T +L+  S      LS  + KT   RVP
Sbjct: 77  NYARVDNRQYRLLKLATPGPYTFILE-ASKEVPKRLSHPSRKTIGLRVP 124


>gi|300868277|ref|ZP_07112906.1| translation factor SUA5 [Oscillatoria sp. PCC 6506]
 gi|300333712|emb|CBN58090.1| translation factor SUA5 [Oscillatoria sp. PCC 6506]
          Length = 222

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 19/195 (9%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  +  PT+TVY +  D    +A+ R+ +IK      PL      +S + ++A V  
Sbjct: 24  LQAGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKHLSNDKPLTFLCPSLSNIAQYAVVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLIETYGHPL 135
               + K   PGP T    LL  T + P  +     KT   RVP   F   L+E  G+P+
Sbjct: 84  SGYRMIKRLIPGPYTF---LLPATKLVPRLVMEPKRKTTGIRVPDQKFCLALLEALGNPI 140

Query: 136 AIPSA----NRSGQISITNV-------KHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
              SA    +  G+     +       K  L  S+ K + +I+D   S+ G + STI+++
Sbjct: 141 ISTSAHITNDDEGKAPAAALATEENFGKAELFDSLEKLVDIIVD-DTSETGYQVSTILDL 199

Query: 184 QCEKKVRILRPGGLE 198
             +K   + R  G E
Sbjct: 200 TQDKPSIVRRGLGWE 214


>gi|124023897|ref|YP_001018204.1| translation factor (SUA5) [Prochlorococcus marinus str. MIT 9303]
 gi|123964183|gb|ABM78939.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 196

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 17/201 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++ D++AL      L AG    +PT+T   L   +  P    +L+ +K+R A  PLI   
Sbjct: 7   AVLDASAL---ASRLHAGSAALLPTDT---LPALAAAPVHAAQLWTMKQRSADKPLILMA 60

Query: 65  SDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +    +  H  V PL+L     +A+ +WPG LTLV+   S   +  L+     T   RVP
Sbjct: 61  ATPEELLAH--VSPLALEDAWSMARRYWPGALTLVVP-ASGVLVEALNPGAF-TLGLRVP 116

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            CG  + L++  G PLA  SAN SG  + T       +       L      +  GL ST
Sbjct: 117 DCGVIRCLLKQSG-PLATTSANLSGA-APTFSADAAHTCFPGLPLLGPLPWPTPSGLAST 174

Query: 180 IVNVQCEKKVRILRPGGLEIE 200
           +V  Q   +   LR G + +E
Sbjct: 175 VVAWQGSGRWHELRRGAVVLE 195


>gi|104779340|ref|YP_605838.1| hypothetical protein PSEEN0027 [Pseudomonas entomophila L48]
 gi|122401163|sp|Q1I2G9|RIMN_PSEE4 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|95108327|emb|CAK13021.1| conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein
           [Pseudomonas entomophila L48]
          Length = 185

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 59/150 (39%), Gaps = 23/150 (15%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSWRVQQAAREVKAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60

Query: 66  DISMVK------KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118
           +I              +D +S       WPGP T    L+   D+ P   T    T   R
Sbjct: 61  NIRQFDFLFEDFPQDWIDRMSAT-----WPGPNTW---LVPHQDLLPEWVTGQHDTVALR 112

Query: 119 VP--------CGFTKKLIETYGHPLAIPSA 140
           V         C     LI T  +P   P+A
Sbjct: 113 VSDHPQVRELCALVGPLISTSCNPAGRPAA 142


>gi|71065086|ref|YP_263813.1| translation factor SUA5 [Psychrobacter arcticus 273-4]
 gi|71038071|gb|AAZ18379.1| translation factor SUA5 [Psychrobacter arcticus 273-4]
          Length = 207

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 10/208 (4%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ+  I   N     + +    L     I  PT+T Y          A+ +L  I++   
Sbjct: 1   MQVFYIHPENPQPRLIEQVANLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKHIRELDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTA 115
            +       D+S +  +A+VD +     K   P P+T +L+  +T D+   L+ A  KT 
Sbjct: 61  KHQFTLLCRDLSEIANYAAVDNVQFKQLKAHTPAPITFILN--ATKDVPKKLAHAKKKTI 118

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             RVP     + L+E    P+   S     + +I +    +   +  +I  +I+ GI   
Sbjct: 119 GIRVPSNAIAQALLEAMDEPILTSSLILPNRDNILDDPFEIEELLGNQIDGLINAGIKTT 178

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETL 202
            L +TIV++   +   ++R G  ++++L
Sbjct: 179 KL-TTIVDMTSSQP-EVIRQGAADVDSL 204


>gi|85059382|ref|YP_455084.1| hypothetical protein SG1404 [Sodalis glossinidius str. 'morsitans']
 gi|84779902|dbj|BAE74679.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 206

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L  G  I  PT++ Y L     + TA+ R+  I++    +       D+S +  +
Sbjct: 19  QAVDLLRKGAVIVYPTDSGYALGCQLEDKTAMERICRIRQLDGHHNFTLVCRDLSELSTY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       L+E  
Sbjct: 79  AQVDNQAFRLMKNNTPGKYTFILK--ATKEVPRRLMSDKRKTIGLRVPSNPIALALLEVL 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+   +    G     +    +   + K++ L+I GG   +G + T V    +   R+
Sbjct: 137 DKPMMSTTLMLPGNDFAESDPESICDHLGKQVDLVIHGGF--LGQQPTTVIDLTDPTPRV 194

Query: 192 LRPG 195
           +R G
Sbjct: 195 VRQG 198


>gi|86132278|ref|ZP_01050873.1| YrdC protein [Dokdonia donghaensis MED134]
 gi|85817197|gb|EAQ38380.1| YrdC protein [Dokdonia donghaensis MED134]
          Length = 205

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68
           L++  + L AG  I  P++TVY L  D  N  A+ ++ +IK      A    +C   D+S
Sbjct: 17  LKQIVKILKAGGLIIYPSDTVYALGCDITNAKALEKVAQIKGVKLAKANFSFVCE--DLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +  +   +D  +  + K   PGP T +   L   +  P S    K    RVP    T+ 
Sbjct: 75  NLSDYVRQIDTKTFKILKRALPGPYTFI---LPGNNNLPSSFKKKKEVGIRVPDNEITRA 131

Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   G+P+   S     + I  T    ++       + +I+DGG     + ST++++  
Sbjct: 132 IVRALGNPIVSTSIYDEDEVIEYTTDPELIFEKWQNRVDVIVDGGYGG-NIPSTVIDLTG 190

Query: 186 EKKVRILRPG 195
           ++ + ++R G
Sbjct: 191 DEPI-LIREG 199


>gi|332140784|ref|YP_004426522.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550806|gb|AEA97524.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 206

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +ACE +  G  +  PT++ Y +     +  A+ +L  I++    +       D+S + 
Sbjct: 17  ISQACELIRDGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRQIDKDHNFTLMCRDMSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD  +    K   PG  T VL   +T ++   L     KT   RVP       L+E
Sbjct: 77  IYAKVDNTAFRQIKNNTPGHYTFVLK--ATREVPKRLQNPKRKTIGIRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +   ++  ++ K++ LII GG   IG   T V    +   
Sbjct: 135 ELGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGLIIHGGY--IGEHPTTVIDLSDDTP 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 VIMRHG 198


>gi|190576014|ref|YP_001973859.1| hypothetical protein Smlt4185 [Stenotrophomonas maltophilia K279a]
 gi|212288232|sp|B2FIS1|RIMN_STRMK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|190013936|emb|CAQ47576.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 186

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 6/138 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L AG  IA PTE V+GL  D  +  A+  +  +K+RP    +I   +D++ ++
Sbjct: 6   LDSAVATLRAGGVIAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAADLAQLE 65

Query: 72  KHASVD--PLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +   P +   A L  WPG  T +L   +     P  T        R+       +L
Sbjct: 66  GWVRLQALPDARQRAVLASWPGANTWILP--AGPRAQPWVTGEHSGIAVRISAHPLVAEL 123

Query: 128 IETYGHPLAIPSANRSGQ 145
              +G PL   SAN +G+
Sbjct: 124 CRAWGGPLVSTSANLAGE 141


>gi|254421677|ref|ZP_05035395.1| hypothetical protein S7335_1827 [Synechococcus sp. PCC 7335]
 gi|196189166|gb|EDX84130.1| hypothetical protein S7335_1827 [Synechococcus sp. PCC 7335]
          Length = 241

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 22/188 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81
           ++ PT+TV  LA     P+    ++  K+RP   PLI   + +  +  + S    ++   
Sbjct: 63  VSFPTDTVPALAA---APSQADLIFAAKQRPPEKPLILMGASLGDLLPYVSGQDSAMAAW 119

Query: 82  -HLAKLFWPGPLTLVLDL--LSTTDIHPLST-ANLKTACFRVPCGFTKKLIETYGHPLAI 137
             +A+ +WPG LTLVL    L+  +++P  T     T   RVP       + +   PLA 
Sbjct: 120 QSIAEQYWPGQLTLVLPASDLAPKNLNPHPTDQTAGTLGIRVPDHPVALALLSQTGPLAT 179

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI------GLESTIVNVQCEKKVRI 191
            SAN SGQ ++T +     S+I +  P  +  G          G+ ST+         +I
Sbjct: 180 TSANLSGQPALTEI-----SAIAQMFPSALTLGPEDYQSKAASGMPSTVAK-WTSHGWQI 233

Query: 192 LRPGGLEI 199
           LR G +++
Sbjct: 234 LRQGKIQL 241


>gi|293609079|ref|ZP_06691382.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829652|gb|EFF88014.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 205

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 10/186 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S +  +
Sbjct: 18  QAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIATY 77

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIE 129
           A VD  +  L K   P   T +L   S      +HP      KT   R+P     + L++
Sbjct: 78  AKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQALLQ 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    GQ    +  + + + + K I + IDGG   +   ++IV++  E   
Sbjct: 134 ELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTL-TSTSIVDLSGEHP- 191

Query: 190 RILRPG 195
            I+R G
Sbjct: 192 EIIRRG 197


>gi|169634119|ref|YP_001707855.1| hypothetical protein ABSDF2646 [Acinetobacter baumannii SDF]
 gi|169152911|emb|CAP01952.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 205

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S + 
Sbjct: 16  IEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD  +  L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ++IV++  E 
Sbjct: 132 LKELGGPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTL-TTTSIVDLSGEH 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIIRHG 197


>gi|300777696|ref|ZP_07087554.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
           35910]
 gi|300503206|gb|EFK34346.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 203

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 19/196 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLIC--- 62
            N + +  + L+ G  I  P++TVY L  +  +  A+ +L ++KK     +   +IC   
Sbjct: 14  ENLVNEVIKTLNNGGLIIYPSDTVYALGCNIFDIKAMEKLAQLKKMKLEKSKFSIICNDL 73

Query: 63  -HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            H+SD +       +D       K   PGP T +L+   +    PL+    KT   RVP 
Sbjct: 74  SHLSDFT-----RPIDTSVFRFLKSHLPGPFTFILEANKSL---PLAYKGHKTIGIRVPD 125

Query: 122 GFTKKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               +LI E  GHP+A  S     + I  +    +++      + ++ID G     + ST
Sbjct: 126 HPIPQLIVEKLGHPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVAST 184

Query: 180 IVNVQCEKKVRILRPG 195
           IV++   +   I+R G
Sbjct: 185 IVDLTSGEP-EIIRQG 199


>gi|326335637|ref|ZP_08201824.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692403|gb|EGD34355.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 207

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 13/197 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLICHVSDIS 68
           ++K  + L  G  I  PT+TVYGL  D  +  A+ R+ +   IK   A    +C  +D+S
Sbjct: 17  VQKVVDCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLEKANFSFVC--ADLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +  +   +D  +  + K   PG  T +L     T++ P      KT   RVP     + 
Sbjct: 75  NLSDYVKQIDTATFKILKRALPGAYTFILP--GNTNL-PKEFKKKKTVGIRVPDNNIARI 131

Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L++  G+P+   S     + I  T    ++      ++ ++IDGG     + ST++++  
Sbjct: 132 LVKKLGNPIVSSSIYDEDEVIEYTTDPELIFEKWQDKVDMVIDGGYGD-NVASTVIDLST 190

Query: 186 EKKVRILRPGGLEIETL 202
            +   ++R G   IE L
Sbjct: 191 -RVPELIREGKGSIEGL 206


>gi|118462898|ref|YP_880757.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium 104]
 gi|254774340|ref|ZP_05215856.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118164185|gb|ABK65082.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium 104]
          Length = 219

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 7/189 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           + +PT+TVYG+  D+ N  A+  L   K R    P+   V     ++      P     L
Sbjct: 30  VVMPTDTVYGIGADAFNSAAVSALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARDL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L+LV+    +     L  A   T   R+P      +L+   G P+A+ SAN 
Sbjct: 90  IRAFWPGALSLVVTQAPSLQWD-LGDAR-GTVMLRMPLHPVAIELLREVG-PMAVSSANI 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG  +  +        +   + + +  G ++ G  STIV++      RILRPG +  + +
Sbjct: 147 SGHPAAVDADEA-RGQLGDLVDVYLAAGRAERGAASTIVDLTGATP-RILRPGPVSAQRI 204

Query: 203 KRAISVELE 211
              + ++ E
Sbjct: 205 AEVLGIDPE 213


>gi|254412598|ref|ZP_05026371.1| Sua5/YciO/YrdC/YwlC family protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196180333|gb|EDX75324.1| Sua5/YciO/YrdC/YwlC family protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 221

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 13/192 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L  G  +  PT+TVY +  D    +A+ R+  +K+     PL    S +S + 
Sbjct: 17  IEKIRDNLQDGAVMLYPTDTVYAIGCDLNVKSAVERVRRLKQLSNEKPLTFLCSSLSNIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128
           ++A V   +  + K   PGP T    LL  T + P  + +   KT+  RVP     + ++
Sbjct: 77  EYAWVSDPAYRIMKRLIPGPYTF---LLPATKLVPRLVMSPKRKTSGIRVPDHPVCQAIL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKE----IPLIIDGGISKIGLE-STIVNV 183
           E  G+P+   SA+   ++       + ++ +  +    + +I+D G SK G++ STI+++
Sbjct: 134 EALGNPVISTSAHLPDEMGNFPTVGLETARLFDQFEGLVDIIVDDG-SKPGVQVSTILDM 192

Query: 184 QCEKKVRILRPG 195
             ++   ILR G
Sbjct: 193 TGDEPT-ILRKG 203


>gi|163755495|ref|ZP_02162614.1| translation factor [Kordia algicida OT-1]
 gi|161324408|gb|EDP95738.1| translation factor [Kordia algicida OT-1]
          Length = 207

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 13/197 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68
           ++K  + L  G  +  PT+TVYGL  D  N  A+ R+  IK      A    IC+  D+S
Sbjct: 17  IKKVVDILRDGGLVIYPTDTVYGLGCDITNTKALERIARIKGIKLEKANFSFICN--DLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +  +   +D  +  + K   PGP T +   L   +  P      KT   RVP     + 
Sbjct: 75  HISDYIRQIDTPTYKILKKALPGPYTFI---LPGNNNLPKVFKKKKTVGIRVPDNNIART 131

Query: 127 LIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +++  G+P+   S  +    I  T    ++       +  ++DGG     + STI+++  
Sbjct: 132 IVQELGNPIVSTSIYDEDDIIEYTTDPELILEKWENLVDAVVDGGYGD-NVASTIIDLSG 190

Query: 186 EKKVRILRPGGLEIETL 202
            +   ++R G  +I+ +
Sbjct: 191 YEP-EVIREGKGDIDII 206


>gi|47222934|emb|CAF99090.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 472

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  E + +G    +PT+TVY L      P A+ + Y +KK+    P+   +S I 
Sbjct: 308 ASSVQQIAEIMKSGGICGMPTDTVYVLVAACNRPEAVVKAYNVKKQAQDRPMSMWISSIQ 367

Query: 69  MVK--KHASVDPLSLHLAKLFWPGPLTL--VLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            ++  +H  + PL L   +  WP  +++   +D+    D         ++   R P C  
Sbjct: 368 QLEPVRHL-LSPLLLDFMEAAWPSSISMGPWMDIFGLGDASR-HIGTPQSIAIRNPDCSV 425

Query: 124 TKKLIETYGHPLAIPSANRSGQISITN 150
              LI   G P+A+ SAN +G+   T+
Sbjct: 426 ATYLISKVG-PIAVTSANPTGEADTTH 451


>gi|270262116|ref|ZP_06190388.1| hypothetical protein SOD_b03230 [Serratia odorifera 4Rx13]
 gi|270043992|gb|EFA17084.1| hypothetical protein SOD_b03230 [Serratia odorifera 4Rx13]
          Length = 206

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  I  PT++ Y L       +A+ R+  I++    +       D+S + 
Sbjct: 17  INQAVDVLRKGGVIVYPTDSGYALGCKLEEKSAMERICRIRQLDGNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L+E
Sbjct: 77  TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   +    G     +    +S  + K++ L+I GG   +G + T V    E   
Sbjct: 135 VLNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVDLVIHGGF--LGQQPTTVIDLTESAP 192

Query: 190 RILRPGGLEIETLK 203
            ++R G  +I   +
Sbjct: 193 EVVREGAGDITPFR 206


>gi|33863926|ref|NP_895486.1| hypothetical protein PMT1659 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635510|emb|CAE21834.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 196

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 17/201 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++ D++AL      L AG    +PT+T   L   +  P    +L+ IK+R A  PLI   
Sbjct: 7   AVLDASAL---ASRLHAGSAALLPTDT---LPALAAAPVHAAQLWTIKQRSADKPLILMG 60

Query: 65  SDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +    +  H  V PL+L     +A+ +WPG LTLV+   S   +  L+     T   RVP
Sbjct: 61  ATPEELLAH--VLPLALEDVWSMARRYWPGALTLVVP-ASGVLVEALNPGAF-TLGLRVP 116

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            CG  + L++  G PLA  SAN SG  + T       +       L      +  GL ST
Sbjct: 117 DCGMLRTLLKQSG-PLATTSANLSGS-APTFSADAAHTCFPGLPLLGPLPWPTPSGLAST 174

Query: 180 IVNVQCEKKVRILRPGGLEIE 200
           +V  Q   +   LR G + +E
Sbjct: 175 VVAWQGAGRWHELRRGAVVLE 195


>gi|332289472|ref|YP_004420324.1| putative ribosome maturation factor [Gallibacterium anatis UMN179]
 gi|330432368|gb|AEC17427.1| putative ribosome maturation factor [Gallibacterium anatis UMN179]
          Length = 187

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  IA PTE V+GL  D  N  AI +L ++K+RP    LI     +   K+    + 
Sbjct: 14  LKQGEVIAYPTEAVFGLGCDPFNDQAIEKLLKLKQRPQEKGLILIAPHLDFFKQIIDFNK 73

Query: 79  LS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGH 133
           LS   L   +  +  P T ++ +     + PL T    T   R+ C     + L +    
Sbjct: 74  LSAQDLQRLQQTYSRPTTWIVPV--QKQVSPLLTGRFDTIAVRL-CRHPAVEMLCQLAKM 130

Query: 134 PLAIPSANRSGQ 145
           P+   SAN SGQ
Sbjct: 131 PITSTSANFSGQ 142


>gi|120436667|ref|YP_862353.1| YrdC domain-containing protein [Gramella forsetii KT0803]
 gi|117578817|emb|CAL67286.1| protein containing YrdC domain [Gramella forsetii KT0803]
          Length = 206

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 25/215 (11%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54
           +++ I D N     + K  E L  G  I  PT+T+YGL  D  N +A+ ++ +IK     
Sbjct: 3   ELLRIYDENPAPKHINKVVETLRKGGLIIYPTDTIYGLGCDITNVSALEKIAQIKNVKLE 62

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
            A    +C   D+S +  +   +D  +  + K   PGP T +   L   +  P      K
Sbjct: 63  KANFSFVCE--DLSNLSDYVKQIDSSTFKILKRSLPGPYTFI---LPGGNSLPNVFKKKK 117

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-----IPLII 167
           T   RVP     + ++   G+P+   S     ++    +++     + KE     + ++I
Sbjct: 118 TVGIRVPDNNICRAIVNGLGNPIVSTSIRDEDEV----LEYSTDPELIKEKWDHLVDIVI 173

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           DGG     + ST++++   +   ++R G   I+ +
Sbjct: 174 DGGFGD-NIASTVIDLTTGEP-EVIREGKGRIDIM 206


>gi|93005341|ref|YP_579778.1| Sua5/YciO/YrdC/YwlC [Psychrobacter cryohalolentis K5]
 gi|92393019|gb|ABE74294.1| translation factor SUA5 [Psychrobacter cryohalolentis K5]
          Length = 205

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 10/208 (4%)

Query: 1   MQIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ+  I   N     + +  + L     I  PT+T Y          A+ +L +I+    
Sbjct: 1   MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTA 115
            +       D+S +  +A+VD +     K   P P+T +L+  +T D+   L+ A  KT 
Sbjct: 61  KHQFTLLCRDLSEIANYAAVDNVQFKQLKSHTPAPITFILN--ATKDVPKKLAHAKKKTI 118

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             RVP     + L+E    P+   S     +  I +    +   +  +I  +I+ GI   
Sbjct: 119 GIRVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIEELLGNQIDGLINAGIKTT 178

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETL 202
            L +TIV++   +   I+R G  ++ +L
Sbjct: 179 KL-TTIVDMTSSQP-EIIRQGAADVSSL 204


>gi|294778304|ref|ZP_06743730.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510]
 gi|294447932|gb|EFG16506.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510]
          Length = 204

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L +    L+ G  I  PT+T+Y +        AI R+ ++K   P  N L     D+S +
Sbjct: 15  LEEVIRVLEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSIICYDLSNI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            ++A VD  +  L K   PGP T +L+   T +  P    N K    RVP
Sbjct: 75  SEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVP 121


>gi|226942190|ref|YP_002797263.1| RNA binding yrdC protein [Azotobacter vinelandii DJ]
 gi|226717117|gb|ACO76288.1| RNA binding yrdC protein [Azotobacter vinelandii DJ]
          Length = 185

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 29/148 (19%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+    +  G  IA PTE V+GL  D  N  A+RRL  +K+RP    LI   +DI    
Sbjct: 7   VRQVARAVRRGGVIAYPTEAVWGLGCDPWNADAVRRLLALKRRPQDKGLILVAADIGQFG 66

Query: 72  KHASVDPLSL--HLAKLFWPGPLTLVLD----------------LLSTTDIHPLSTANLK 113
                 P +    LA   WPGP T ++                  L  +D HPL      
Sbjct: 67  FLLDDLPSAWRERLAGT-WPGPNTWLVPHRGRLPAWITGRHASVALRVSD-HPL------ 118

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSAN 141
               R  C  T  L+ T  +P   P+A 
Sbjct: 119 ---VRALCRLTGPLVSTSANPAGRPAAR 143


>gi|149928539|ref|ZP_01916768.1| Sua5/YciO/YrdC/YwlC family protein [Limnobacter sp. MED105]
 gi|149822738|gb|EDM81996.1| Sua5/YciO/YrdC/YwlC family protein [Limnobacter sp. MED105]
          Length = 218

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 4/181 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S   ++A + +++G   AIPT++ Y L     +  A+ RL  +K       L     D+S
Sbjct: 14  SRLCKQAADLINSGGIAAIPTDSCYALVCHLDDKNAVERLRRLKGISEKQHLALLCKDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKK 126
            +  +A V+ +   L K  +PGP T +L+  +T ++   +S  + K+   RVP     + 
Sbjct: 74  ELGSYAKVNNVQYRLLKSVFPGPYTFILE--ATKEVPKRVSHPSKKSIGLRVPAHAVVQG 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E     L   +    G             ++  ++ LI+D G       +T+++   E
Sbjct: 132 LLEHIEGALIATTLQLPGMEEPARSGWEAQEAVGNDVDLIVDDGEYCGAFPTTVIDWTSE 191

Query: 187 K 187
           +
Sbjct: 192 E 192


>gi|67924899|ref|ZP_00518292.1| SUA5/yciO/yrdC, N-terminal [Crocosphaera watsonii WH 8501]
 gi|67853266|gb|EAM48632.1| SUA5/yciO/yrdC, N-terminal [Crocosphaera watsonii WH 8501]
          Length = 199

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP----LS 80
           I+ PT+TV  LA     P     ++  KKRP   PLI   S    + K+    P    + 
Sbjct: 19  ISFPTDTVPALAA---LPNYASLIFATKKRPPDKPLILMGSSPKAIWKYVQGTPEEFRIW 75

Query: 81  LHLAKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
             + + +WPG LTLVL    L   D++PL  +   T   R+P     + I      LA  
Sbjct: 76  QEVVQKYWPGQLTLVLPASELVPKDMNPLDNS---TIGVRIPDSVIARNILKETGCLATT 132

Query: 139 SANRSGQISITNVKHILSS---SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           SAN SG+     ++ I+ S   ++  +   + +G     GL ST+     +  + ILR G
Sbjct: 133 SANLSGEPPKEKLREIVVSFPNALVLDKEPLNNGKKYGSGLPSTVAKWTNQGWI-ILRQG 191

Query: 196 GLEI 199
            +++
Sbjct: 192 SIQL 195


>gi|212710704|ref|ZP_03318832.1| hypothetical protein PROVALCAL_01771 [Providencia alcalifaciens DSM
           30120]
 gi|212686401|gb|EEB45929.1| hypothetical protein PROVALCAL_01771 [Providencia alcalifaciens DSM
           30120]
          Length = 206

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ E L+ G  +  PT++ Y +        A+ R+  I+K  + +       D+S + 
Sbjct: 17  ISQSVEILNKGGVVVYPTDSGYAIGCRLEEKNALERICRIRKLDSNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD     L K   PG  T +L   +T ++   L     KT   RVP     + L+E
Sbjct: 77  NYAHVDNTVFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIARDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL   S    G     +    +   + K++ L+I GG   IG + T V
Sbjct: 135 AVGEPLMSTSLILPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTV 184


>gi|77457715|ref|YP_347220.1| translation factor SUA5 [Pseudomonas fluorescens Pf0-1]
 gi|77381718|gb|ABA73231.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 209

 Score = 47.0 bits (110), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y +     +  AI R+  +++    +      SD+S + 
Sbjct: 17  IKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLDEKHNFALICSDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A +D  +  + K   PGP T +L+         +HP      +T   RVP       L
Sbjct: 77  NYAKIDTATFRILKAHLPGPYTFILNATREVPRLLLHP----KKRTIGLRVPSHPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +   G PL   +    G     +  + +   +  ++ LIIDGG   I   ST++++
Sbjct: 133 LAELGEPLMSVTLIMPGDEDPLSDPYEMRQVLEHQVDLIIDGGSGGIK-ASTVIDL 187


>gi|260913990|ref|ZP_05920464.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC
           43325]
 gi|260632077|gb|EEX50254.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC
           43325]
          Length = 207

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRRGGVIIYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V+  +  L K   PG  T +  L +T ++   L T+  KT   RVP       L++
Sbjct: 77  TYSLVNNTAYRLIKNNTPGRYTFI--LAATKELPRRLMTSKRKTIGIRVPDNQIALDLLK 134

Query: 130 TYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             G P+   S    G+  IT      +   + +++ LII GG   +G E T V    E  
Sbjct: 135 ALGEPILSCSLMLPGEEYITQSDPEEIRDRLERQVDLIIHGGY--LGQEPTTVVDLTEDT 192

Query: 189 VRILRPG 195
             ILR G
Sbjct: 193 PVILREG 199


>gi|145298417|ref|YP_001141258.1| hypothetical protein ASA_1410 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851189|gb|ABO89510.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 206

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 7/186 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + +  G  IA PT++ Y L     +  A+ R+  I++    +       D+S +  +
Sbjct: 19  QAVQIIQNGGVIAYPTDSGYALGCQMGDKGALERICRIRRIDPTHDFTLVCRDLSEISTY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIETY 131
           A VD  +  L K   PGP T +    +T ++   L     KT   RVP       L+E  
Sbjct: 79  AKVDNTAFRLVKGNTPGPYTFIFK--ATKEVPRRLMNEKKKTIGIRVPANNIALALLEAL 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           G PL   +    G          +   + K++ L+++GG   +G + +T+V+   ++ V 
Sbjct: 137 GEPLLSTTLILPGSEMAEFDPEEIFDKLGKQLDLVVNGGY--LGEQPTTVVDFSDDETVL 194

Query: 191 ILRPGG 196
             R  G
Sbjct: 195 RRRGAG 200


>gi|262280082|ref|ZP_06057867.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260433|gb|EEY79166.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 205

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S + 
Sbjct: 16  ISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD  +  L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNATYRLLKANTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ++IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTL-TSTSIVDLSGEH 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIIRRG 197


>gi|168035903|ref|XP_001770448.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678325|gb|EDQ64785.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 291

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 24/218 (11%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S +D   L    E + +G    IPT+TVY +  D +N  AI RLY IK    M PL    
Sbjct: 52  SGSDVWRLDPLVELIKSGAVGIIPTDTVYAIVCDLKNRQAIDRLYRIKNMDPMKPLSILC 111

Query: 65  SDISMVKKHASVDPLS--------LHLAKLFWPGPLTLVL--------DLLSTTDIHPLS 108
                + K+    P             A+   PGP T +L           +      +S
Sbjct: 112 RSFQDIDKYTLGFPRGNSHGQTNVFRAARQSLPGPYTFILPASKEMPKQCTTFGGSSAVS 171

Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKE- 162
            A  K+   R+P      +L++    PL   S  +  +    +    +     +S  +E 
Sbjct: 172 CAPRKSVGVRMPDDVICAELLKRLDEPLLCTSVRQRSEDEWMLDPVIIADTYGASEGREG 231

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           +  +IDGG  ++   ST++++  EK + ILR G   +E
Sbjct: 232 VDFVIDGG-ERLAYPSTVIDMTGEKPI-ILRRGKGPVE 267


>gi|326773289|ref|ZP_08232572.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505]
 gi|326636519|gb|EGE37422.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505]
          Length = 205

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D GL +A PT++ Y LA    N   + R+  I++    +      +D + V   A V   
Sbjct: 26  DGGL-VAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFAQVGPLAIVGNN 84

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLIETYGHPLA 136
           +  L K   PGP T +L    T D+ P  T N K  T   R+P    T+ L+  +G P+ 
Sbjct: 85  AFRLIKRLTPGPWTFILK--GTKDV-PRMTLNPKKHTLGVRIPDHAITQSLVAEFGAPIL 141

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
             +  R GQ         +  S+   I ++++G + + G  ++++++  +    +LR G 
Sbjct: 142 SSTFIRPGQEEPETNGWEIQDSLGHLIDVVVEGPVGQ-GEPTSVIDL-TDDVPEVLREGA 199

Query: 197 LEIETL 202
            ++  L
Sbjct: 200 GDVSLL 205


>gi|319897336|ref|YP_004135532.1| translation factor sua5 [Haemophilus influenzae F3031]
 gi|317432841|emb|CBY81206.1| conserved protein, putative translation factor SUA5 [Haemophilus
           influenzae F3031]
          Length = 207

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K    +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLSEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V+  +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNKIALDLLS 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P+   + Q     ++  L      ++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPNEEHTTQSDPEEIRDRLE----HQVDLIIHGGY--LGQELTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|89902007|ref|YP_524478.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118]
 gi|89346744|gb|ABD70947.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118]
          Length = 207

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 2/160 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   LD G  +A+PT++ Y L     +  A  +L  I+     + L     D+S + 
Sbjct: 17  LKQAITLLDQGDILAVPTDSSYALVCHLDDKAAADKLRRIRGVDDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A VD       K   PGP T +L   S      LS  + KT   RVP     + L++ 
Sbjct: 77  NYAQVDNQQFRRIKSATPGPYTFILQ-ASKEVPRRLSHPSRKTIGLRVPEHKVLQALLDL 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           +  PL   +    G++   N    +     K+I  +ID G
Sbjct: 136 HNGPLLATTLIPPGEVEPINDALEIRERYKKQIAAVIDAG 175


>gi|261749259|ref|YP_003256944.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497351|gb|ACX83801.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K+ + L  G  +  PT+TV+GL  D+ N  A+ ++Y+IK R     +I  V   SM +
Sbjct: 7   IEKSVKILKKGKSLLYPTDTVWGLGCDAFNIKAVEKIYKIKNRSFSKTMILLVE--SMDR 64

Query: 72  KHASVDPLSLHLAKLFWPG----PLTLVLD--LLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +  V+ +   + K+        P+T+V D      + ++P +  N  T   R+    F 
Sbjct: 65  LYELVEEIPFFVKKILLENHRKKPITIVYDNPRKIVSKLNPQAKDN--TLAIRLTMDPFC 122

Query: 125 KKLIETYGHPLAIPSANRSG 144
             LI+    P+   SAN SG
Sbjct: 123 SLLIQNLDRPIISTSANLSG 142


>gi|86607002|ref|YP_475765.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab]
 gi|86555544|gb|ABD00502.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab]
          Length = 235

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++++    L  G  +  PT+TVY +  D  +  A+ R+  +K+     PL      +S
Sbjct: 14  ARSIQRIAAALREGAVMLYPTDTVYAIGCDVTHKQAVERVRRLKRLSNDKPLTFLCPSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTK 125
            + ++A V   +  L +   PGP T    LL  T + P  +     KT   RVP     +
Sbjct: 74  QIAQYAQVSDPAYRLMRRLIPGPFTF---LLPATKLVPKLVMDPKRKTTGIRVPDSAICQ 130

Query: 126 KLIETYGHPLAIPSANRSG 144
            L+   G+P+   SA   G
Sbjct: 131 ALLAELGNPIVSTSAKLGG 149


>gi|261343645|ref|ZP_05971290.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rustigianii DSM
           4541]
 gi|282568028|gb|EFB73563.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rustigianii DSM
           4541]
          Length = 206

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L+ G  +  PT++ Y +     +  A++R+  I++  A +       D+S + 
Sbjct: 17  ISQSVDILNKGGVVVYPTDSGYAIGCRLEDKDALQRICRIRQLDANHNFTLMCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD     L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  NYAHVDNTVFRLIKNNTPGNYTFILK--GTKEVPRRLMNEKKKTIGLRVPSNPIARDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL   S    G     +    +   + K++ L+I GG   IG + T V
Sbjct: 135 AVGEPLMSTSLILPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTV 184


>gi|291612767|ref|YP_003522924.1| SUA5/yciO/yrdC domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291582879|gb|ADE10537.1| SUA5/yciO/yrdC domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 185

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 16/175 (9%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R+   +L  G  IA PTE+ YGL  D  N  A+ RL ++K+RP    LI   S    V +
Sbjct: 9   RQLAAYLKRGGLIAYPTESCYGLGCDPANRAAVLRLLKLKRRPQRKGLILIASHYRQVAR 68

Query: 73  HASVDPLS-LHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +  + PL+    A+L   G   +T ++ + S+       T +  T   R+    F ++L 
Sbjct: 69  Y--LQPLAPADQARLQHEGAQAVTYLMPVRSSAPRWLRGTHD--TLAVRLTAHPFARQLC 124

Query: 129 ETYGHPLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            +    L   SANRSGQ    +  + + +  + +      ++ G + K    STI
Sbjct: 125 RSADSALVSTSANRSGQRPAKTYADCRRLFGNKV-----WVLRGRVGKRKQPSTI 174


>gi|282895924|ref|ZP_06303964.1| Sua5/YciO/YrdC/YwlC [Raphidiopsis brookii D9]
 gi|281199169|gb|EFA74038.1| Sua5/YciO/YrdC/YwlC [Raphidiopsis brookii D9]
          Length = 219

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V  +A V  
Sbjct: 24  LSGGAVMLYPTDTVYAIGCDLNAKSAVERVKKIKRLANDKPLTFLCPSLSRVATYAFVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPC-GFTKKLIETYGHPL 135
           ++  + K   PGP T    LL  T + P    N   KT   RVP       L+E+ G+P+
Sbjct: 84  MAYRIMKSLIPGPYTF---LLPATKLVPRLVQNPKRKTTGIRVPNHHLCLALLESLGNPI 140

Query: 136 AIPSAN 141
              SA+
Sbjct: 141 ISTSAH 146


>gi|148981774|ref|ZP_01816522.1| putative translation factor [Vibrionales bacterium SWAT-3]
 gi|145960741|gb|EDK26080.1| putative translation factor [Vibrionales bacterium SWAT-3]
          Length = 206

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 6/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIVRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++  L K   PG  T +    +T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYARVDNVAFRLLKAHTPGAYTFIFK--ATKEVPKRLMNAKRKTIGIRVPDNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G  +  +    +  S+   + +I++GG   +G + T V    +   
Sbjct: 135 AMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGY--LGEQPTTVIDFSDDDA 192

Query: 190 RILRPGG 196
            ILR G 
Sbjct: 193 VILRRGA 199


>gi|269467898|gb|EEZ79637.1| translation factor SUA5 [uncultured SUP05 cluster bacterium]
          Length = 178

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R A E+L AG  I+ PT+T+ GL+   R   ++ RL +IK+R A   LI   SD+  ++ 
Sbjct: 6   RLASEYLKAGGVISHPTDTIQGLSCLPRFEHSMHRLLKIKQRSAAKGLILLASDVRYLED 65

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           +  V  +S  L  +   G  T  L L +++ I  L T    T   R+       +L +  
Sbjct: 66  Y--VADVS-QLKSIKNTGAPTTYL-LKASSKISKLLTGEFSTVAIRLTDNALIAELCKAT 121

Query: 132 GHPLAIPSANRSGQISITNV 151
              L   SAN +G+ S T+V
Sbjct: 122 NSALVSSSANTTGKHSATSV 141


>gi|188995759|ref|YP_001930011.1| hypothetical protein PGN_1895 [Porphyromonas gingivalis ATCC 33277]
 gi|188595439|dbj|BAG34414.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 191

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 23/164 (14%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +KA E +  G  I  PT+T++G+  D+ N  A+RR+Y +K+R     ++       ++  
Sbjct: 11  KKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVRRIYRLKERADSKSMLV------LIDS 64

Query: 73  HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
            A +  L   + +L W        PLT++        + P   A+  +   R+    F+ 
Sbjct: 65  EAKLQGLMDEVPELAWDLIELTTKPLTIIYP--QAKGVVPALIASDGSLGIRLTRETFSA 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +L      P+   SAN SGQ S      I         P I+DG
Sbjct: 123 ELCRLMRVPIVSTSANISGQPSARTFGEIA--------PAILDG 158


>gi|41408558|ref|NP_961394.1| hypothetical protein MAP2460c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396916|gb|AAS04777.1| hypothetical protein MAP_2460c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 219

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 7/189 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           + +PT+TVYG+  D+ N  A+  L   K R    P+   V     ++      P     L
Sbjct: 30  VVMPTDTVYGIGADAFNSAAVSALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARDL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            + FWPG L+LV+    +     L  A   T   R+P      +L+   G P+A+ SAN 
Sbjct: 90  IRAFWPGALSLVVPQAPSLQWD-LGDAR-GTVMLRMPLHPVAIELLREVG-PMAVSSANI 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG  +  +        +   + + +  G ++ G  STIV++      RILRPG +  + +
Sbjct: 147 SGHPAAVDADEA-RGQLGDLVDVYLAAGRAERGAASTIVDLTGATP-RILRPGPVSAQRI 204

Query: 203 KRAISVELE 211
              + ++ E
Sbjct: 205 AAVLGIDPE 213


>gi|301156160|emb|CBW15631.1| conserved protein [Haemophilus parainfluenzae T3T1]
          Length = 207

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 15/191 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A+V   +  L K   PG  T +L   +T ++   L T+  KT   RVP       L++
Sbjct: 77  TYATVSNSAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGLRVPDNQIALDLLK 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             G P     L +P            ++  L     +++ LII GG   +G E T V   
Sbjct: 135 ALGEPILSCSLMLPDNEHMTYSDPEEIRECLE----RQVDLIIHGGY--LGQEPTTVVDL 188

Query: 185 CEKKVRILRPG 195
            E+   ILR G
Sbjct: 189 TEESPVILREG 199


>gi|326673468|ref|XP_003199892.1| PREDICTED: hypothetical protein LOC335392 [Danio rerio]
          Length = 876

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 87/198 (43%), Gaps = 15/198 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S ++ +  E +  G    +PT+TVY L      P A+ + Y +KK+    P+   V+ I 
Sbjct: 607 STSVHQIAEIMKNGGICGMPTDTVYVLVAACNRPQAVEKAYSVKKQAKERPMSLWVASIK 666

Query: 69  MVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KTACFRVP-C 121
            ++     + P+     +  WP  ++LV+      +   L  ++      ++   R P C
Sbjct: 667 QLEPVRKQISPILWDFMEAAWPSSISLVIARAPWMEFFGLGDSSKYIGTPQSIAIRNPDC 726

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI   G P+A+ SAN +G+   T+   +  + +  ++  ++  G S   + ST+V
Sbjct: 727 TVATHLINAVG-PIAVTSANPTGEADTTHHNQVY-AKLGDKVDGVLCDGPSPENIASTVV 784

Query: 182 NVQCEK----KVRILRPG 195
           +  C K    ++   R G
Sbjct: 785 D--CTKIESGQIGFFRVG 800


>gi|87119434|ref|ZP_01075331.1| putative translation factor [Marinomonas sp. MED121]
 gi|86164910|gb|EAQ66178.1| putative translation factor [Marinomonas sp. MED121]
          Length = 206

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + +  G  I  PT+  Y L     + +A+ R+ +I++    +       D+S + 
Sbjct: 17  IRQATDIIRNGGVIVYPTDCGYSLGCHIGDKSALDRIRQIRRLDDKHNFTLVCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A  D     L K   PGP T +    S      +HP      KT   R+P     + L
Sbjct: 77  TYARFDNRLYRLLKHHTPGPYTFIFGATSEVPRRLLHP----KRKTIGIRIPENKIVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   S     +       + +  ++  ++ L+IDGG    G+E T V      
Sbjct: 133 LDELGEPIMSSSLILPNETLPMMDPYDIRDTLQHQLDLVIDGGYC--GMEPTTVIKMDLD 190

Query: 188 KVRILRPG 195
            + ILR G
Sbjct: 191 DMAILRQG 198


>gi|313229165|emb|CBY23750.1| unnamed protein product [Oikopleura dioica]
          Length = 243

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 45/224 (20%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH----------- 73
           IA PT+T++G+A    + +  RR+YEIK R    P+    S I  + ++           
Sbjct: 21  IAFPTDTLFGIAAQISSESGYRRIYEIKGRSEAKPVAVCFSTIPQILQYLPALDRFRELL 80

Query: 74  ----ASVDPLSL-------------------HLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
               +   P+++                    L     PGP+TLV+        H     
Sbjct: 81  MHGRSEAKPVAVCFSTIPQILQYLPALDRFRELLSRLLPGPVTLVVPRGKFIPEH--VNP 138

Query: 111 NLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVK-----HILSSSICKEIPL 165
           N +T   R+P     +L+ +   PL + SAN+SG  S          H L  +I  E  L
Sbjct: 139 NCETIGIRIPDNTISRLL-SQAEPLCLTSANKSGAKSAITSNDFADLHPLLDAIV-ETEL 196

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209
            I   +S+ G  ST+V +  + K   +R  G   +    + + E
Sbjct: 197 GIPTSMSRAG--STVVELNLQAKTYFIRRKGCAFDATVASFTAE 238


>gi|237745676|ref|ZP_04576156.1| translation factor [Oxalobacter formigenes HOxBLS]
 gi|229377027|gb|EEO27118.1| translation factor [Oxalobacter formigenes HOxBLS]
          Length = 208

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 6/189 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  ++KA + +  G  + +PT++ Y L     +  A+ R+ +I++    + L     D+ 
Sbjct: 15  SRLIKKAADVVRGGGVVVMPTDSSYALVCRLDDKAAVDRIRQIRQMDERHLLTLLCRDLK 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126
            V  +A VD  +  L K   PG  T +L   +T ++   LS  + KT   R+P     + 
Sbjct: 75  EVGSYARVDNSAYRLLKAATPGAFTFILQ--ATKEVPRRLSHPSRKTIGLRIPDNRIDQA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   +    G        + +   + K +  +IDGG   + L +T++++   
Sbjct: 133 LLEELGEPLIGTTLILPGDEDPLTEGYAIQERLEKLVDAVIDGGACGL-LPTTVIDL-TG 190

Query: 187 KKVRILRPG 195
           K+  ++R G
Sbjct: 191 KEPELVRSG 199


>gi|221103657|ref|XP_002161835.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 139

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 13/114 (11%)

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147
           PGP+TLV    S  + +   T+N  +   R+P C F + L +    P+A+ SAN S  +S
Sbjct: 12  PGPVTLVFQRSSLLNSYLNPTSN--SIGVRIPKCAFIQTLAQKCQQPIALTSANISSAMS 69

Query: 148 ITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPG 195
             ++K      +  ++ LI+DGG       S++G  ST+V++  E +  I+R G
Sbjct: 70  SLDIKEF--EELWPKLDLIVDGGTLGSSEQSRLG--STVVDLTKEGEFTIIREG 119


>gi|89094112|ref|ZP_01167055.1| hypothetical protein MED92_16255 [Oceanospirillum sp. MED92]
 gi|89081587|gb|EAR60816.1| hypothetical protein MED92_16255 [Oceanospirillum sp. MED92]
          Length = 205

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 80/192 (41%), Gaps = 10/192 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E ++ G  +  PT+  Y L     + +A+ ++  I++    +       D+S + 
Sbjct: 17  INQAVEIINRGGVVIYPTDCAYALGCHLGDKSALEKIKRIRQLDDKHNFTLVCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD     L K   PG  T +L   S      +HP      +T   R+P       L
Sbjct: 77  TYAKVDNSCYRLLKSHTPGAYTFILKATSEVPRRLLHP----KRRTIGIRIPDNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G P+   S    G+       + +   +  ++ L+IDGG    G+E+T V    E+
Sbjct: 133 TEALGEPIMSTSLIMPGEEMPLMDPYEMRELLQHQVDLVIDGGYC--GMEATSVINLVEE 190

Query: 188 KVRILRPGGLEI 199
              I+R G  ++
Sbjct: 191 TPEIIREGAGDV 202


>gi|160891097|ref|ZP_02072100.1| hypothetical protein BACUNI_03544 [Bacteroides uniformis ATCC 8492]
 gi|156859318|gb|EDO52749.1| hypothetical protein BACUNI_03544 [Bacteroides uniformis ATCC 8492]
          Length = 204

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 17/192 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  +  PT+T+Y +        AI R+  +K   P  N L     D+S V
Sbjct: 15  LQQVVDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKNIDPKKNNLSIICYDLSKV 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++A VD  +  L K   PG  T +L+   TT + P    N K    R+P      +I+ 
Sbjct: 75  SEYAKVDNSTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNSIIQE 128

Query: 131 YGHPLAIP------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
               L  P        + +  I       ++       + L+IDGGI   G E + V V 
Sbjct: 129 IARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGSTV-VD 185

Query: 185 CEK-KVRILRPG 195
           C   +  I+R G
Sbjct: 186 CTNGEPEIIRQG 197


>gi|283832908|ref|ZP_06352649.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220]
 gi|291071513|gb|EFE09622.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220]
          Length = 206

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L+E
Sbjct: 77  TYSFVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDSP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|113475329|ref|YP_721390.1| SUA5/yciO/yrdC-like [Trichodesmium erythraeum IMS101]
 gi|110166377|gb|ABG50917.1| SUA5/yciO/yrdC-like [Trichodesmium erythraeum IMS101]
          Length = 197

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 26/190 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83
           ++ PT+TV  LA     P     ++++K R    P+I   ++ + +  +       L L 
Sbjct: 19  VSFPTDTVPALAA---RPDRANLIFQVKGRSQDKPVILMGANAASLWPYICGSDQELQLW 75

Query: 84  ---AKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
              A  +WPG LTLV   L  +++ P  ++     T   RVP C   +K++   G PLA 
Sbjct: 76  QRVAGKYWPGQLTLV---LPASEMVPRVMNPVEGTTIGVRVPNCDIARKIMARTG-PLAT 131

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-------IGLESTIVNVQCEKKVR 190
            SAN SGQ ++  +     + I ++ P ++   +S+        G+ ST+       +  
Sbjct: 132 TSANISGQPTLGKM-----AEISRQFPEVLVVSLSQSEEIMLTSGVPSTVAKWNGIARWE 186

Query: 191 ILRPGGLEIE 200
           ILR G ++++
Sbjct: 187 ILRQGAVKLK 196


>gi|309379075|emb|CBX22377.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 206

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E L+ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IRQAVEILNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAEIDNVQFRQLKAATPGPYTFILQ--ATKDVPARALHP----KRKTIGLRIP 124


>gi|27573707|pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio
          Length = 221

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A  R+  I++ P  +       D+S + 
Sbjct: 32  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELS 91

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 92  TYSFVDNVAFRLXKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGXRVPSNPIAQALLE 149

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P    S    G     +    +   + K++ LII GG
Sbjct: 150 ALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQVDLIIHGG 190


>gi|300770029|ref|ZP_07079908.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762505|gb|EFK59322.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 191

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+  D   + KA E L  G  I  PT+T++G+  D+ NP A+ R+ ++K R     +I  
Sbjct: 1   MTPIDREDINKALETLKNGGLILYPTDTIWGIGCDATNPEAVDRIIQLKGRSKEKSMIVL 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122
           + + + +  + +  P   +    +   PLT+V    +  ++   + A   +   R V   
Sbjct: 61  LHNENQLAGYVNDIPEVAYQLIEYTEHPLTIVYS--NAKNLAANAIAEDGSIGIRIVNHP 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQ 145
           F  +L++ +  P+   SAN SG+
Sbjct: 119 FCTQLLQRFRKPIISTSANISGE 141


>gi|325272507|ref|ZP_08138885.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324102368|gb|EGB99836.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 185

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVAD 60

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA---CFR 118
           +I          P   +      WPGP T ++   DLL         T  L+ +     R
Sbjct: 61  NIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQDLLPEWVTGQHDTVALRVSDHPVVR 120

Query: 119 VPCGFTKKLIETYGHPLAIPSA 140
             C     LI T  +P   P+A
Sbjct: 121 ELCALVGPLISTSCNPGGRPAA 142


>gi|293395933|ref|ZP_06640214.1| Sua5/YciO/YrdC/YwlC family protein [Serratia odorifera DSM 4582]
 gi|291421431|gb|EFE94679.1| Sua5/YciO/YrdC/YwlC family protein [Serratia odorifera DSM 4582]
          Length = 206

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L        A+ R+  I++    +       D+S + 
Sbjct: 17  INQAVEVLRKGGVIVYPTDSGYALGCKLEEKAAMERICRIRQLDGNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L+E
Sbjct: 77  TYAYVDNSAFRLIKNNTPGHYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   +    G     +    +S  + K++ L+I GG   +G + T V    E   
Sbjct: 135 ELNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVELVIHGGF--LGQQPTTVIDLTESSP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVVREG 198


>gi|239993915|ref|ZP_04714439.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonas macleodii ATCC
           27126]
          Length = 201

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 6/175 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
             AG  I  PTE V G+  D  N  A+  L EIK+RP    +I   ++ S +  + + + 
Sbjct: 29  FQAGSLIVYPTEAVMGIGCDPDNEAAVNALLEIKQRPVEKGVILIAANYSQLLPYVNDNA 88

Query: 79  LSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
           +       +F  WPGP T +L   S+  +  L+  + K A          +L    G PL
Sbjct: 89  IRPDRRTDIFSSWPGPNTWLLPKSSSAPVW-LTGKHSKIAVRVTNHPVVVELCNKLGKPL 147

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              SAN +GQ   T  +   + ++  +    ++G +      STI +    + +R
Sbjct: 148 VSTSANLTGQPPATTTEE--AKAVFADSVFYVEGEVGGATKPSTIRDGDTAEVIR 200


>gi|320539230|ref|ZP_08038901.1| putative ribosome maturation factor [Serratia symbiotica str.
           Tucson]
 gi|320030868|gb|EFW12876.1| putative ribosome maturation factor [Serratia symbiotica str.
           Tucson]
          Length = 189

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HL 83
           IA PTE V+GL  D  +  A+  L  +K+R     LI   +D   +  + +   LS    
Sbjct: 22  IAYPTEAVFGLGCDPDSEQAVNTLLSLKQRSWEKGLILIAADYQQLIPYINDSALSEPQR 81

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           A +F  WPGP+T  +     T      T    +   RV      ++L   YG PL   SA
Sbjct: 82  AAIFASWPGPVTWAIPARPETPR--FLTGRFNSLAVRVSAHPLVQQLCRQYGKPLVSTSA 139

Query: 141 NRSGQISITNVKHI 154
           N S +    N   +
Sbjct: 140 NFSEREPCRNTNEV 153


>gi|254425585|ref|ZP_05039302.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. PCC
           7335]
 gi|196188008|gb|EDX82973.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. PCC
           7335]
          Length = 751

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 7/206 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+KA   L  G  +AI     + L VD+RN  AI RL ++K+RP   PL    +  +  +
Sbjct: 190 LQKAIASLKQGKIVAIKGLGGFQLLVDARNNEAITRLRQLKQRP-HKPLALICATFAAAR 248

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +HA +  ++  L     PGP+ L+      +++  L           +P       L+  
Sbjct: 249 RHAQISEVAAALLTAA-PGPIVLLPRRQDVSELSRLIAPQSPFLGIMLPTTPLHYLLLGA 307

Query: 131 YGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           YGHP+   S N SG+   T+ +  L   S+  +  L+ +  I +   +S +  VQ   + 
Sbjct: 308 YGHPVVATSGNVSGEPICTDNRAALEKLSVIADAFLVHNRPIQRPVDDSVVQIVQ--DRP 365

Query: 190 RILRPG-GLEIETLKRAISVELEYCV 214
           +ILR   G   +T+  A  +    CV
Sbjct: 366 QILRHARGYAPQTIHVANQLPASTCV 391


>gi|149375615|ref|ZP_01893384.1| putative translation factor [Marinobacter algicola DG893]
 gi|149360017|gb|EDM48472.1| putative translation factor [Marinobacter algicola DG893]
          Length = 191

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 6/169 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL---SL 81
           IA PTE V+GL  D  +  A+ R+  +K+RP    LI   + +  ++    +DPL     
Sbjct: 26  IAYPTEAVWGLGCDPWDQEAVERVLSLKQRPMEKGLILVAASVDQIR--FLLDPLPKEQQ 83

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
             A   WPGP+T +L  +       +   +   A         + L E  G PL   S N
Sbjct: 84  RQAMSHWPGPVTCLLPDVRQQIPQQVRGRHSSIAVRVSDHPVVRALCEAAGFPLVSTSCN 143

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            +G+        +       E+  ++ G +      S I+++   K++R
Sbjct: 144 PAGRQPARTSWQV-RRYFEGELDWLVPGELGGNRQPSRIIDIVSGKQLR 191


>gi|50084077|ref|YP_045587.1| hypothetical protein ACIAD0865 [Acinetobacter sp. ADP1]
 gi|49530053|emb|CAG67765.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 211

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E + AG  +  PT+  Y +     N +A+ R+ +I+     +       D+S + 
Sbjct: 22  INQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDIA 81

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD     L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 82  TYAKVDNAMYRLLKANTPSITTFILPATSEVPKRLMHP----KKKTIGLRIPTNPICQAL 137

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   +    GQ    +  + + + + K + + IDGG   +   S IV++  E 
Sbjct: 138 LQELGEPILTSTLILPGQSDPLDDPYDIENQLGKRVDVFIDGGFGTLSTTS-IVDLSGEN 196

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  ++   +
Sbjct: 197 P-EVVRHGAGDVSAFE 211


>gi|23200231|pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1
          Length = 206

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A  R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP     + L+E
Sbjct: 77  TYSFVDNVAFRLXKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGXRVPSNPIAQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G P    S    G     +    +   + K++ LII GG
Sbjct: 135 ALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175


>gi|332976018|gb|EGK12889.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. 1501(2011)]
          Length = 228

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          +  + +A ++L  G  +A PTE+V+G+  D+ N  A+ ++  IK RPA   +I    +I 
Sbjct: 9  TTEIEQAAQWLQQGKLLAYPTESVWGIGCDAYNEEAVNQILTIKNRPAEKGMIVVTDNID 68

Query: 69 MVK 71
           V+
Sbjct: 69 RVR 71


>gi|290770141|gb|ADD61901.1| putative protein [uncultured organism]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 17/192 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  +  PT+T+Y +        AI R+  +K   P  N L     D+S V
Sbjct: 15  LQQVIDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKDIDPKKNNLSIICYDLSKV 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++A VD  +  L K   PG  T +L+   TT + P    N K    R+P      +I+ 
Sbjct: 75  SEYAKVDNSTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNSIIQE 128

Query: 131 YGHPLAIP------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
               L  P        + +  I       ++       + L+IDGGI   G E + V V 
Sbjct: 129 IARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGSTV-VD 185

Query: 185 CEK-KVRILRPG 195
           C   +  I+R G
Sbjct: 186 CTNGEPEIIRQG 197


>gi|170719276|ref|YP_001746964.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida W619]
 gi|212288216|sp|B1J499|RIMN_PSEPW RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|169757279|gb|ACA70595.1| SUA5/yciO/yrdC domain [Pseudomonas putida W619]
          Length = 185

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 25/200 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVAD 60

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP--- 120
           +I          P   +      WPGP T    L+   D+ P   T    T   RV    
Sbjct: 61  NIRQFDFLFEDFPEDWIDRMGSTWPGPNTW---LVPHQDLLPEWVTGQHDTVALRVSDHP 117

Query: 121 -----CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
                C     LI T  +P   P+A    ++ +    H        ++ +++ G +    
Sbjct: 118 QVRELCALVGPLISTSCNPGGRPAAK--SRLRVEQYFH-------GDLDMVLGGALGGRK 168

Query: 176 LESTIVNVQCEKKVRILRPG 195
             S I N+   +   I+RPG
Sbjct: 169 NPSVIRNLATGE---IVRPG 185


>gi|317481004|ref|ZP_07940084.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36]
 gi|316902897|gb|EFV24771.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 17/192 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  +  PT+T+Y +        AI R+  +K   P  N L     D+S V
Sbjct: 15  LQQVVDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKNIDPKKNNLSIICYDLSKV 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++A VD  +  L K   PG  T +L+   TT + P    N K    R+P      +I+ 
Sbjct: 75  SEYAKVDNATFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNSIIQE 128

Query: 131 YGHPLAIPSANRS------GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
               L  P    +        I       ++       + L+IDGGI   G E + V V 
Sbjct: 129 IARLLDAPIMTTTLPHEDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGSTV-VD 185

Query: 185 CEK-KVRILRPG 195
           C   +  I+R G
Sbjct: 186 CTNGEPEIIRQG 197


>gi|194477096|ref|YP_002049275.1| Putative translation factor (SUA5) [Paulinella chromatophora]
 gi|171192103|gb|ACB43065.1| Putative translation factor (SUA5) [Paulinella chromatophora]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG P   PT+T+  +A     P   ++++E+K R    PLI    +  ++ K  +   LS
Sbjct: 16  AGSPGIFPTDTLPAIATI---PGKAKQIWELKHRIKSKPLILMGHEAELLFKFIAQPILS 72

Query: 81  --LHLAKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135
               + + +WPG LT+++    L   +++PL      +   RVP C  T  L+   G PL
Sbjct: 73  DCYKVGERYWPGALTIIVPASGLIVKELNPLGN----SIGLRVPACRSTLDLLSRTG-PL 127

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLESTIVNVQCEKKVRILR 193
           A  SAN SG+       H +S+   K IPL+  +    + I   STIV +    K +I R
Sbjct: 128 ATSSANISGKYPYL-FPHQVSADF-KNIPLLGPLPWPKNTITTGSTIVELYGSGKWKIHR 185

Query: 194 PG 195
            G
Sbjct: 186 QG 187


>gi|84394230|ref|ZP_00992958.1| Putative translation factor [Vibrio splendidus 12B01]
 gi|84375144|gb|EAP92063.1| Putative translation factor [Vibrio splendidus 12B01]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 6/185 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S +  +
Sbjct: 19  QAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELSLY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD ++  L K   PG  T +    +T ++   L  A  KT   RVP       L+E  
Sbjct: 79  ARVDNVAFRLLKAHTPGAYTFIFK--ATKEVPKRLMNAKRKTIGIRVPDNKIALDLLEAM 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL   S    G  +  +    +  S+   + +I++GG   +G + T V    +    +
Sbjct: 137 GEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGY--LGEQPTTVIDFSDDDAVV 194

Query: 192 LRPGG 196
           LR G 
Sbjct: 195 LRRGA 199


>gi|270294398|ref|ZP_06200600.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20]
 gi|270275865|gb|EFA21725.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 17/192 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  +  PT+T+Y +        AI R+  +K   P  N L     D+S V
Sbjct: 15  LQQVIDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKDIDPKKNNLSIICYDLSKV 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++A VD  +  L K   PG  T +L+   TT + P    N K    R+P      +I+ 
Sbjct: 75  SEYAKVDNSTFKLMKRNLPGAFTFILN--GTTRL-PKIFRNRKEVGIRMP---DNSIIQE 128

Query: 131 YGHPLAIP------SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
               L  P        + +  I       ++       + L+IDGGI   G E + V V 
Sbjct: 129 IARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGSTV-VD 185

Query: 185 CEK-KVRILRPG 195
           C   +  I+R G
Sbjct: 186 CTNGEPEIIRQG 197


>gi|264676972|ref|YP_003276878.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2]
 gi|262207484|gb|ACY31582.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2]
          Length = 214

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L  G  +A+PT++ Y L     +  A+ R+  I++    + L     D+S + 
Sbjct: 17  IKQAADMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +A VD     L KL  PGP T +L+  S      LS  + KT   RVP
Sbjct: 77  NYARVDNRQYRLLKLATPGPYTFILE-ASKEVPKRLSHPSRKTIGLRVP 124


>gi|148545343|ref|YP_001265445.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida F1]
 gi|212288214|sp|A5VWK1|RIMN_PSEP1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|148509401|gb|ABQ76261.1| SUA5/yciO/yrdC, N-terminal domain [Pseudomonas putida F1]
          Length = 185

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 19/197 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA---CFR 118
           +I          P   +      WPGP T ++   DLL         T  L+ +     R
Sbjct: 61  NIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQDLLPEWVTGQHDTVALRVSDHPVVR 120

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
             C     LI T  +P   P+A    ++ +    H        ++ L++ G +      S
Sbjct: 121 ELCALVGPLISTSCNPGGRPAAKT--RLRVEQYFH-------GQLDLVLGGALGGRKNPS 171

Query: 179 TIVNVQCEKKVRILRPG 195
            I N+   +   ++RPG
Sbjct: 172 VIRNLATGE---VVRPG 185


>gi|322515423|ref|ZP_08068414.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus ureae ATCC
           25976]
 gi|322118546|gb|EFX90779.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus ureae ATCC
           25976]
          Length = 205

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 80/194 (41%), Gaps = 15/194 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L        AI R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAIDRIVAIRKLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A V   S  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALALIAE 134

Query: 131 YGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            G P     L +P      +I+ ++   I    +   + LII GG   +G E T V    
Sbjct: 135 LGEPILSCSLMLPDT----EITESDPDEI-REHLEHRVDLIIHGGY--LGQEPTTVIDLT 187

Query: 186 EKKVRILRPGGLEI 199
           E   RI+R G  +I
Sbjct: 188 EDSPRIIREGSGDI 201


>gi|157370905|ref|YP_001478894.1| hypothetical protein Spro_2665 [Serratia proteamaculans 568]
 gi|157322669|gb|ABV41766.1| Sua5/YciO/YrdC/YwlC family protein [Serratia proteamaculans 568]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  I  PT++ Y L       +A+ R+  I++    +       D+S + 
Sbjct: 17  INQAVDVLRKGGVIVYPTDSGYALGCKLEEKSAMERICRIRQLDGNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L+E
Sbjct: 77  TYAYVDNTAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   +    G     +    +S  + K++ L+I GG   +G + T V    E   
Sbjct: 135 VLNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVDLVIHGGF--LGQQPTTVIDLTESAP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVVREG 198


>gi|227497322|ref|ZP_03927554.1| SUA5/YciO/YrdC/YwlC [Actinomyces urogenitalis DSM 15434]
 gi|226833193|gb|EEH65576.1| SUA5/YciO/YrdC/YwlC [Actinomyces urogenitalis DSM 15434]
          Length = 242

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 6   ITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP-AMNPL 60
           +TD N  R     +    D GL + IPT+TVYG+   + +  A+ RL   K R   M P 
Sbjct: 1   MTDVNEDRTLSTVVAHVRDGGL-VIIPTDTVYGIGTLASDAAAVARLLAAKGRGRQMPPP 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +       +     ++ P +  L + FWPG LT++LD  +  D+         T   R+P
Sbjct: 60  VLVAGPDQLDGVVGALPPAAQALMEAFWPGALTIILD--AAPDLGWDLGETGGTIAVRMP 117

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL---------SSSICKEIP------ 164
                 +L+   G P+A+ SAN +GQ   T+              + S     P      
Sbjct: 118 DHPLALELLRATG-PMAVTSANHTGQPPATDAASARVAFPGRVREAGSPGAGSPDRSEGD 176

Query: 165 -LIIDGGISKIGLESTIVNVQCEKKV--RILRPGGLEIETL 202
            L++DGG +   + STIV++  +     RI+R G L +  L
Sbjct: 177 ILLLDGGATPGPVPSTIVSLAGDHAYSPRIIRDGVLSLSQL 217


>gi|260220460|emb|CBA28020.1| Uncharacterized protein HI1198 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 207

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 4/186 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L+ G  +A+PT++ Y L     +  A  +L  I+     + L     D+S + 
Sbjct: 17  LKQAIALLEKGGILAVPTDSSYALVCHLDDKAAADKLRSIRGVDDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A VD     L K   PG  T +L+  S      +S  + KT   RVP     ++L+  
Sbjct: 77  NYARVDNRQYRLLKAATPGAYTFILE-ASKEVPRRVSHPSRKTIGLRVPEHQVLQELLAH 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           YG  L   +    G+    N    +      +I  +ID G     LE T V     ++  
Sbjct: 136 YGSALLATTLIAKGESEPLNDAQDIRERYEHQIAAVIDAG--ACALEPTTVIDLTGEEPE 193

Query: 191 ILRPGG 196
           ++R GG
Sbjct: 194 LIRQGG 199


>gi|313496442|gb|ADR57808.1| RimN [Pseudomonas putida BIRD-1]
          Length = 185

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVAD 60

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA---CFR 118
           +I          P   +      WPGP T ++   DLL         T  L+ +     R
Sbjct: 61  NIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQDLLPEWVTGQHDTVALRVSDHPVVR 120

Query: 119 VPCGFTKKLIETYGHPLAIPSA 140
             C     LI T  +P   P+A
Sbjct: 121 ELCALVGPLISTSCNPGGRPAA 142


>gi|330881838|gb|EGH15987.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 59/147 (40%), Gaps = 14/147 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLHL 83
           IA PTE V+GL  D  +  A+ RL  IK RP    LI    +I          P L L  
Sbjct: 2   IAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNIRQFDFLFEDFPQLWLDR 61

Query: 84  AKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---CFRVPCGFTKKLIETYGHPL 135
               WPGP T ++   +LL    T IH   T  L+       R  C     LI T  +P 
Sbjct: 62  MASTWPGPNTWLVPHQNLLPEWITGIH--ETVALRVTDHPTVRELCALVGPLISTSANPA 119

Query: 136 AIPSAN---RSGQISITNVKHILSSSI 159
             P+A    R  Q     +  +L  S+
Sbjct: 120 GRPAARSRLRVEQYFRGQIDGVLGGSL 146


>gi|329894513|ref|ZP_08270327.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium IMCC3088]
 gi|328923038|gb|EGG30363.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium IMCC3088]
          Length = 207

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 20/197 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++A + + AG  +  PT++ Y L     D R    IRR+ ++  +     L+C   D+S
Sbjct: 17  IKQAADIIRAGGIVVYPTDSAYALGCHIGDKRALDTIRRIRKLDDKHNFT-LVCR--DLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126
            +   A VD  +  L K   PGP T +L   +T ++   L  A  KT   RVP     + 
Sbjct: 74  ELANFARVDNAAYRLLKAATPGPYTFILK--ATPEVPRRLLHAKRKTIGLRVPENNIAQA 131

Query: 127 LIETYGHPLA----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           L+     P+     I   +    I    ++ +L      ++ L+IDGG    GLE T V 
Sbjct: 132 LLAELNEPMMSVTLIMPDDEDPLIDPYEIRDLLEH----DVDLVIDGGYC--GLEMTTVI 185

Query: 183 VQCEKKVRILRPGGLEI 199
              + +  ++R G  +I
Sbjct: 186 DLADDEPVLVRQGKGDI 202


>gi|86141363|ref|ZP_01059909.1| putative Sua5/yciO/yrdC family protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85831922|gb|EAQ50377.1| putative Sua5/yciO/yrdC family protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 205

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 17/208 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKR 54
           + + + D N     +++  E L     I  PT+TVYGL  D  +  A+ R+ +   +K  
Sbjct: 3   EFIKLYDENPSEREIKRIVEVLKNDGVIIYPTDTVYGLGCDITSNRALERVAQLRGVKLA 62

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
            A    IC   D+S +  +   +D  +  L K   PGP T +   L   +  P      K
Sbjct: 63  KANFSFICE--DLSNLSDYVRQIDTPTFKLLKRALPGPYTFI---LPGNNNLPTVFKKKK 117

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
           T   RVP     + ++   G+P+   S  +    I  T    ++     K + ++IDGG 
Sbjct: 118 TVGIRVPDNNIARAIVSHLGNPIISTSIYDEDDVIEYTTDPELILEKWDKLVDVVIDGGY 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEI 199
               + ST++++   + V +LR G  E+
Sbjct: 178 GG-NIPSTVIDLTSGEAV-VLREGKGEL 203


>gi|299531543|ref|ZP_07044949.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44]
 gi|298720506|gb|EFI61457.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44]
          Length = 214

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L  G  +A+PT++ Y L     +  A+ R+  I++    + L     D+S + 
Sbjct: 17  IKQAADMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +A VD     L KL  PGP T +L+  S      LS  + KT   RVP
Sbjct: 77  NYARVDNRQYRLLKLATPGPYTFILE-ASKEVPKRLSHPSRKTIGLRVP 124


>gi|26986815|ref|NP_742240.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
 gi|81442499|sp|Q88RQ9|RIMN_PSEPK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|24981412|gb|AAN65704.1|AE016197_2 Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
          Length = 185

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 17/147 (11%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60

Query: 66  DISMVK------KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTA- 115
           +I              +D +S       WPGP T ++   DLL         T  L+ + 
Sbjct: 61  NIRQFDFLFEDFPEDWIDRMSST-----WPGPNTWLVPHQDLLPEWVTGQHDTVALRVSD 115

Query: 116 --CFRVPCGFTKKLIETYGHPLAIPSA 140
               R  C     LI T  +P   P+A
Sbjct: 116 HPVVRELCALVGPLISTSCNPGGRPAA 142


>gi|113474502|ref|YP_720563.1| translation factor SUA5 [Trichodesmium erythraeum IMS101]
 gi|110165550|gb|ABG50090.1| translation factor SUA5 [Trichodesmium erythraeum IMS101]
          Length = 218

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 14/198 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L  G  +  PT+TVY +  D    +A+ ++ +IK+     PL    S +S + 
Sbjct: 17  VEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLSNDKPLTFLCSSLSNIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128
            +A V+  +  + K   PGP T V   L  T + P  + +   KT   RVP       L+
Sbjct: 77  NYAVVNDSAYRIIKRLIPGPYTFV---LPATKLVPRLVMSPKRKTTGIRVPNNQVCLTLL 133

Query: 129 ETYGHPLAIPSANRSG--------QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           +   +P+   SAN +         ++ +   K  L   +   + +I+D G   I   STI
Sbjct: 134 KALDNPIISTSANITSDAEGIAPIKVEVVTGKAELFDCLENLVDIIVDDGSDSIYQVSTI 193

Query: 181 VNVQCEKKVRILRPGGLE 198
           +++   +   I +  G+E
Sbjct: 194 LDLTGHQPNLIRQGLGVE 211


>gi|113867221|ref|YP_725710.1| putative translation factor (SUA5) [Ralstonia eutropha H16]
 gi|113525997|emb|CAJ92342.1| putative translation factor (SUA5) [Ralstonia eutropha H16]
          Length = 207

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 4/164 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +++A + L  G  IA+PT++ Y LA    +  A+ RL  ++     + L     D+S
Sbjct: 14  SRLVKQAAQILQKGGLIALPTDSSYALACRLDDKAAVERLRRLRGIDDRHHLTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126
            +   A VD       K   PGP   +L+  +T ++   LS    KT   RVP       
Sbjct: 74  ELGNFARVDNRQYRWLKGATPGPYVFILE--ATKEVPRRLSHPARKTIGVRVPEHAIPLA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           L+   G PL   +    G     N    + + + K++ L++ GG
Sbjct: 132 LLGETGEPLISATLQMPGDEEPLNDPAEIRARLEKQLDLVVCGG 175


>gi|86147036|ref|ZP_01065353.1| Putative translation factor [Vibrio sp. MED222]
 gi|218709945|ref|YP_002417566.1| translation factor [Vibrio splendidus LGP32]
 gi|85835101|gb|EAQ53242.1| Putative translation factor [Vibrio sp. MED222]
 gi|218322964|emb|CAV19141.1| hypothetical translation factor [Vibrio splendidus LGP32]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 6/185 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S +  +
Sbjct: 19  QAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLSELSLY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD ++  L K   PG  T +    +T ++   L  A  KT   RVP       L+E  
Sbjct: 79  ARVDNVAFRLLKAHTPGAYTFIFK--ATKEVPKRLMNAKRKTIGIRVPDNKIALDLLEAM 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL   S    G  +  +    +  S+   + +I++GG   +G + T V    +    +
Sbjct: 137 GEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGY--LGEQPTTVIDFSDDDAVV 194

Query: 192 LRPGG 196
           LR G 
Sbjct: 195 LRRGA 199


>gi|186681197|ref|YP_001864393.1| Sua5/YciO/YrdC/YwlC family protein [Nostoc punctiforme PCC 73102]
 gi|186463649|gb|ACC79450.1| Sua5/YciO/YrdC/YwlC family protein [Nostoc punctiforme PCC 73102]
          Length = 219

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 16/193 (8%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V  +A V  
Sbjct: 24  LSSGAVMLYPTDTVYAIGCDLNAKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135
            +  + K   PGP T    LL  T + P  + +   K+   RVP      +L+   G+P+
Sbjct: 84  TAYRIMKRLIPGPYTF---LLPATKLVPRLVQSPKRKSTGIRVPNHTVCLELLAALGNPI 140

Query: 136 AIPSAN------RSGQISI----TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
              SA+       +G I I       +  L   + K + +I+D G       STI+++  
Sbjct: 141 ISTSAHLPADEADNGMIRIDPETVQSRVELFDRLDKLVDIIVDTGEEPTYEVSTILDMTG 200

Query: 186 EKKVRILRPGGLE 198
           ++   I R  G E
Sbjct: 201 DEAAIIRRGLGWE 213


>gi|312883596|ref|ZP_07743321.1| YrdC family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368819|gb|EFP96346.1| YrdC family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  +  KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNRIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    GQ    +    +   +   +  I++GG   +G + T V    E + 
Sbjct: 135 ALGEPLMSTSLILPGQDVTESDPEDIRDKLEHAVDCILNGGY--LGEQPTTVVDFSEDEP 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 VIVRMG 198


>gi|302850327|ref|XP_002956691.1| hypothetical protein VOLCADRAFT_107339 [Volvox carteri f.
           nagariensis]
 gi|300258052|gb|EFJ42293.1| hypothetical protein VOLCADRAFT_107339 [Volvox carteri f.
           nagariensis]
          Length = 233

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +D+  L +  + L  G    IPT+T+  +  D  N  A++RLY +K+  A  PL C V +
Sbjct: 61  SDAWRLEQIVDLLKNGAVGVIPTDTLPAIVCDLHNKDAVQRLYTVKEMDAKKPLSCLVPN 120

Query: 67  ISMVKKHASVDPLS--------LHLAKLFWPGPLTL--VLDLLSTTDIH 105
           +S V ++ +  P S         ++ +   PGP  L  V  +L  T +H
Sbjct: 121 LSAVTQYTTGFPASNTPGSPNWFNVVRRLVPGPTILEGVGGVLLCTSVH 169


>gi|217970101|ref|YP_002355335.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T]
 gi|217507428|gb|ACK54439.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T]
          Length = 207

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E L  G  +A+PT++ Y LA    +   + R+  I+     +       D+S + 
Sbjct: 17  IRQAAEILRGGGLVALPTDSAYALACQVGDAALLDRIRRIRGVDERHHFTLMCRDLSEIG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVP 120
            +A VD     L K   PGP T +L+    L    +HP      KT   RVP
Sbjct: 77  TYARVDNSQYRLLKAVTPGPYTFILEGTKELPRRVLHP----KRKTIGLRVP 124


>gi|159039551|ref|YP_001538804.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
 gi|157918386|gb|ABV99813.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
          Length = 214

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 20/200 (10%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK-KRPAMNPLICHVSDISMVKKH 73
           A E +  G  + +PT+TVYG+  D+  P A++ L + K  RP   P+        ++   
Sbjct: 18  AIEAVRGGELVVLPTDTVYGVGADAFTPHAVKALLDAKGGRPVPPPV--------LIGSR 69

Query: 74  ASVDPLSLHLAK-------LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
            ++D L   L +        FWPG LT+V++   +       T+   T   R+P      
Sbjct: 70  RTLDGLVFRLPRAARDLVEAFWPGALTIVVEHSPSLRWDLGETSG--TVAVRMPLHPVAL 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     P+A+ SAN +G  + T  +      +   +   ++ G +   + STIV++   
Sbjct: 128 EVLRETGPMAVASANTAGLPAATTAEAA-RGQLAYSVRTYLEAGPAVDPVPSTIVDLTGA 186

Query: 187 KKVRILRPGGLEIETLKRAI 206
              +++R G + ++ L+  +
Sbjct: 187 VP-QLVRAGAIGLDRLRDVV 205


>gi|167031107|ref|YP_001666338.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida GB-1]
 gi|212288215|sp|B0KF32|RIMN_PSEPG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|166857595|gb|ABY96002.1| SUA5/yciO/yrdC domain [Pseudomonas putida GB-1]
          Length = 185

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 78/200 (39%), Gaps = 25/200 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSFRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP--- 120
           +I          P   +      WPGP T    L+   D+ P   T    T   RV    
Sbjct: 61  NIRQFDFLFEDFPEDWIERMGSTWPGPNTW---LVPHQDLLPEWVTGKHDTVALRVTDHP 117

Query: 121 -----CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
                C     LI T  +P   P+A    ++ +    H        ++ L++ G +    
Sbjct: 118 QVRELCALVGPLISTSCNPGGRPAAKT--RLRVEQYFH-------GQLDLVLGGALGGRK 168

Query: 176 LESTIVNVQCEKKVRILRPG 195
             S I N+   +   ++RPG
Sbjct: 169 NPSVIRNLATGE---VVRPG 185


>gi|319760358|ref|YP_004124296.1| putative ribosome maturation factor [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039072|gb|ADV33622.1| putative ribosome maturation factor [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I SIT+  +++     L     I  PTE+V+GL  +  + +AIR L +IK+R     L
Sbjct: 1   MIINSITEY-SIKNLSMQLKKNRVIIYPTESVFGLGCNPDSESAIRTLLKIKRRSWKKGL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I   ++ S + K+     LS +   L    WPGP+T V      T      T    +   
Sbjct: 60  ILVAANYSQLLKYVDDRLLSDNQRLLVFSTWPGPVTWVFPARVGTPY--WLTGQFSSIAV 117

Query: 118 RVPCGFT--KKLIETYGHPLAIPSANRSG 144
           RV   F   + L   +G PL   SAN SG
Sbjct: 118 RV-SDFKPIRYLCLDFGKPLVSTSANLSG 145


>gi|126695682|ref|YP_001090568.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542725|gb|ABO16967.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 193

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 22/199 (11%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----IS 68
           + A + L++GLPI  PT+T+  +      P     +Y+ KKR    PLI   S+    I 
Sbjct: 7   KSALKTLNSGLPIIFPTDTLPAIGCL---PKFSNIIYKFKKRDRNKPLILMGSEYKHLID 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            V + A  D    ++A  +WPG LT+V+       ++   T+N  T   R+P     K +
Sbjct: 64  YVHESAKKD--YENIASKYWPGALTIVVPASEKQTVN--LTSNDLTIGLRIPNSCIAKSL 119

Query: 129 ETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLI-IDGGI---SKIGLESTIVNV 183
                PL   SAN SG + SIT      +  I  + P + I G I      G  STI+  
Sbjct: 120 LRETGPLLTSSANISGFKGSIT------AEGIALDFPSVKIYGPIPWEKSSGKASTIIFW 173

Query: 184 QCEKKVRILRPGGLEIETL 202
           +     R++R G + ++ L
Sbjct: 174 KKSGNWRLIREGEVLVKEL 192


>gi|33241612|ref|NP_876553.1| SUA5 protein [Chlamydophila pneumoniae TW-183]
 gi|33236120|gb|AAP98210.1| SUA5 protein [Chlamydophila pneumoniae TW-183]
          Length = 286

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPL 79
           G  +A+PT+TVYG  +    P A  RLY +K R        +V+ I  ++  +   + P 
Sbjct: 22  GKIVALPTDTVYGFVLSLYAPEAEERLYALKDREPSKAFALYVNSIEDIENISGYPLSPT 81

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
           +  LA+LF PG +TLV+        H       +T  FR+      + I  +   L   S
Sbjct: 82  AKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREIVDHCGTLIGTS 133

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           AN S   S    + I +     ++  I DG  S  GLEST+V
Sbjct: 134 ANLSEFPSALTAQEIFADFADHDL-CIFDGPCSH-GLESTVV 173


>gi|257455999|ref|ZP_05621208.1| SUA5/YciO/yrdC domain protein [Enhydrobacter aerosaccus SK60]
 gi|257446588|gb|EEV21622.1| SUA5/YciO/yrdC domain protein [Enhydrobacter aerosaccus SK60]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 4  MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
          M   D+  L    +FL AG  +A PTE V+G+  D  N  A++++  IK+RP    +I  
Sbjct: 1  MQFNDTQ-LDAVQQFLQAGNLLAYPTEAVWGIGCDPFNEIAVKQILAIKQRPIEKGMIVI 59

Query: 64 VSDISMVK 71
            DI+ ++
Sbjct: 60 TGDIAHIQ 67


>gi|62180287|ref|YP_216704.1| hypothetical protein SC1717 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127920|gb|AAX65623.1| putative translation factor [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322714761|gb|EFZ06332.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L++
Sbjct: 77  TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
           T G P+   S    G     +    +   + K++ LII GG   +G + +T++++  +  
Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192

Query: 189 VRILRPG 195
           V +LR G
Sbjct: 193 V-VLREG 198


>gi|16760160|ref|NP_455777.1| hypothetical protein STY1330 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765064|ref|NP_460679.1| hypothetical protein STM1720 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142069|ref|NP_805411.1| hypothetical protein t1633 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56413354|ref|YP_150429.1| hypothetical protein SPA1156 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161613790|ref|YP_001587755.1| hypothetical protein SPAB_01524 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167549771|ref|ZP_02343529.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168230159|ref|ZP_02655217.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237773|ref|ZP_02662831.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241299|ref|ZP_02666231.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260058|ref|ZP_02682031.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168462805|ref|ZP_02696736.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819543|ref|ZP_02831543.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443555|ref|YP_002040974.1| hypothetical protein SNSL254_A1847 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451404|ref|YP_002045767.1| hypothetical protein SeHA_C1910 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470175|ref|ZP_03076159.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734510|ref|YP_002114752.1| hypothetical protein SeSA_A1852 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250623|ref|YP_002146306.1| hypothetical protein SeAg_B1426 [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262994|ref|ZP_03163068.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362278|ref|YP_002141915.1| hypothetical protein SSPA1075 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200390159|ref|ZP_03216770.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927841|ref|ZP_03219042.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207856767|ref|YP_002243418.1| hypothetical protein SEN1313 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213023265|ref|ZP_03337712.1| hypothetical protein Salmonelentericaenterica_12025 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213163148|ref|ZP_03348858.1| hypothetical protein Salmoneentericaenterica_25228 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213421198|ref|ZP_03354264.1| hypothetical protein Salmonentericaenterica_27079 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213424437|ref|ZP_03357250.1| hypothetical protein SentesTyphi_01480 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582659|ref|ZP_03364485.1| hypothetical protein SentesTyph_16218 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213619078|ref|ZP_03372904.1| hypothetical protein SentesTyp_22475 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213649102|ref|ZP_03379155.1| hypothetical protein SentesTy_18553 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855224|ref|ZP_03383464.1| hypothetical protein SentesT_14592 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224583788|ref|YP_002637586.1| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238911888|ref|ZP_04655725.1| hypothetical protein SentesTe_12251 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289829088|ref|ZP_06546768.1| hypothetical protein Salmonellentericaenterica_21274 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25319041|pir||AH0653 conserved hypothetical protein STY1330 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420250|gb|AAL20638.1| putative translation factor [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16502454|emb|CAD08411.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137698|gb|AAO69260.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127611|gb|AAV77117.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161363154|gb|ABX66922.1| hypothetical protein SPAB_01524 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402218|gb|ACF62440.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409708|gb|ACF69927.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456539|gb|EDX45378.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710012|gb|ACF89233.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195634421|gb|EDX52773.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093755|emb|CAR59229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197214326|gb|ACH51723.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241249|gb|EDY23869.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289249|gb|EDY28616.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199602604|gb|EDZ01150.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323183|gb|EDZ08379.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205325048|gb|EDZ12887.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205335546|gb|EDZ22310.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339648|gb|EDZ26412.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343598|gb|EDZ30362.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350954|gb|EDZ37585.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708570|emb|CAR32891.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224468315|gb|ACN46145.1| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246910|emb|CBG24727.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158248|emb|CBW17747.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912713|dbj|BAJ36687.1| hypothetical protein STMDT12_C17440 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085781|emb|CBY95557.1| putative ribosome maturation factor rimN [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224351|gb|EFX49414.1| YciO family [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129992|gb|ADX17422.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326623168|gb|EGE29513.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332988609|gb|AEF07592.1| hypothetical protein STMUK_1692 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L++
Sbjct: 77  TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
           T G P+   S    G     +    +   + K++ LII GG   +G + +T++++  +  
Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192

Query: 189 VRILRPG 195
           V +LR G
Sbjct: 193 V-VLREG 198


>gi|315634118|ref|ZP_07889407.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter segnis ATCC
           33393]
 gi|315477368|gb|EFU68111.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter segnis ATCC
           33393]
          Length = 207

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 21/194 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V   +  L K   PG  T +L   +T ++   L T+  KT   RVP       L++
Sbjct: 77  NYSLVTNSAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALDLLK 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLE-STIV 181
             G P+       S  + + N +HI  S        +  ++ LII GG   +G E +T+V
Sbjct: 135 ALGEPIL------SCSLMLPNEEHITQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVV 186

Query: 182 NVQCEKKVRILRPG 195
           ++  E  V ILR G
Sbjct: 187 DLTTETPV-ILREG 199


>gi|34541562|ref|NP_906041.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83]
 gi|34397879|gb|AAQ66940.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 23/164 (14%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +KA E +  G  I  PT+T++G+  D+ N  A++R+Y +K+R     ++       ++  
Sbjct: 11  KKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVQRIYRLKERADSKSMLV------LIDS 64

Query: 73  HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
            A +  L   + +L W        PLT++        + P   A+  +   R+    F+ 
Sbjct: 65  EAKLQGLMDEVPELAWDLIELTTKPLTIIYP--QAKGVAPALIASDGSLGIRLTRETFSA 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +L      P+   SAN SGQ S      I         P I+DG
Sbjct: 123 ELCRLMRVPIVSTSANISGQPSARTFGEIA--------PAILDG 158


>gi|298493014|ref|YP_003723191.1| Sua5/YciO/YrdC/YwlC family protein ['Nostoc azollae' 0708]
 gi|298234932|gb|ADI66068.1| Sua5/YciO/YrdC/YwlC family protein ['Nostoc azollae' 0708]
          Length = 219

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 16/193 (8%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V  +A V  
Sbjct: 24  LSSGAIMLYPTDTVYAIGCDLNAKSAVERVRQIKQLGNDKPLTFLCPSLSNVATYAFVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN--LKTACFRVPC-GFTKKLIETYGHPL 135
           ++  + K   PG  T    LL  T + P    N   KT   RVP       L+E  G+P+
Sbjct: 84  IAYRIMKRLIPGSYTF---LLPATKLVPRLVQNPKRKTTGIRVPDHTVCLALLEALGNPI 140

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPL----------IIDGGISKIGLESTIVNVQC 185
              SA+   +     +  + S +I   + L          IID G       STI+++  
Sbjct: 141 ISTSAHLPPKDIDYEIAELDSENIMSRVELFDRWDNLVDIIIDTGEEPTYHVSTILDLTD 200

Query: 186 EKKVRILRPGGLE 198
           E+ V   R  G E
Sbjct: 201 EEPVITRRGLGWE 213


>gi|307152837|ref|YP_003888221.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306983065|gb|ADN14946.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7822]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 7/193 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L++G  + +PTE  Y +   +  P AIR++ ++K+  A  PL+  ++    V++   V  
Sbjct: 21  LESGELVIVPTEVSYIIVAHAFKPRAIRKIAQLKRWNAPQPLVL-LTRREKVEEFGVVSA 79

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
            S  L   F P P+TL++   +T  I    TA         P  F   L+     P+   
Sbjct: 80  ASQKLINHF-PYPITLIIPKKNT--IPDTITAQHSALFISCPDEFIYNLVAQIPFPMVCT 136

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           +A  S +      +  +      ++PLI+DGG  K   + T+++        IL  G + 
Sbjct: 137 TAGFSDEYKARKYRTAI-ELFDGQVPLIVDGGDCKYDSKGTLIDCTLPTPT-ILNFGTVS 194

Query: 199 IETLKRAISVELE 211
           ++ L R+I  E+E
Sbjct: 195 VDDL-RSILPEIE 206


>gi|317494303|ref|ZP_07952717.1| yrdC domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917553|gb|EFV38898.1| yrdC domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTE V+GL  D  +  A+  L ++K+R     LI   ++   ++ +     LS    
Sbjct: 22  VAYPTEAVFGLGCDPDSELAVHALLDLKQRQWEKGLILIAANYEQLQPYVDDAKLSGERR 81

Query: 85  KL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
           +    +WPGP+T V+    TT           T   RV      + L   +G PL   SA
Sbjct: 82  EEVFSYWPGPVTWVMPAKPTTP--QWLRGRFSTIAVRVSDHPLVQTLCLQFGKPLVSTSA 139

Query: 141 NRSG 144
           N SG
Sbjct: 140 NLSG 143


>gi|28898727|ref|NP_798332.1| putative translation factor [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839753|ref|ZP_01992420.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810]
 gi|260363729|ref|ZP_05776505.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus K5030]
 gi|260877277|ref|ZP_05889632.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897776|ref|ZP_05906272.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus
           Peru-466]
 gi|260903496|ref|ZP_05911891.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ4037]
 gi|28806945|dbj|BAC60216.1| putative translation factor [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746720|gb|EDM57708.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810]
 gi|308087594|gb|EFO37289.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308090289|gb|EFO39984.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308106751|gb|EFO44291.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ4037]
 gi|308114914|gb|EFO52454.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus K5030]
 gi|328474709|gb|EGF45514.1| putative translation factor [Vibrio parahaemolyticus 10329]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYARVDNGAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPNNQIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +   +   + +I++GG   +G + T V    E + 
Sbjct: 135 ALGEPLMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTVIDFSEGEP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVVRIG 198


>gi|205352606|ref|YP_002226407.1| hypothetical protein SG1394 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272387|emb|CAR37267.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627670|gb|EGE34013.1| hypothetical protein SG9_1422 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSGLS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L++
Sbjct: 77  TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
           T G P+   S    G     +    +   + K++ LII GG   +G + +T++++  +  
Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192

Query: 189 VRILRPG 195
           V +LR G
Sbjct: 193 V-VLREG 198


>gi|309379826|emb|CBX21602.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 166

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 5/168 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTE+ YGL        A+ +L  +KKRP    +I   +    ++    +   SL  +
Sbjct: 2   VAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSESLQAM 61

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANR 142
            +  WP P T +L   S   +  L          R+P     ++L +  G PL   S NR
Sbjct: 62  LRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRIPDHAGARRLCQALGMPLVSTSCNR 120

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G+ +    + +      +++  I+ G I +    S I++ +  K++R
Sbjct: 121 AGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDGETGKRLR 166


>gi|304388786|ref|ZP_07370842.1| translation factor RimN [Neisseria meningitidis ATCC 13091]
 gi|304337238|gb|EFM03416.1| translation factor RimN [Neisseria meningitidis ATCC 13091]
 gi|325205095|gb|ADZ00549.1| protein RimN [Neisseria meningitidis M01-240355]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +I   +
Sbjct: 17  IIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGN 76

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
               ++    +   +L  + +  WP P T +L   S   +  L          RVP    
Sbjct: 77  QFEQLQPLLQMPSENLQAMLRKEWPAPKTFLLSAKSCV-LPELRGKQRSKLAVRVPAHVG 135

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L      PL   S NR+G+ +    + +      +++  I+ G I +    S I++ 
Sbjct: 136 ARRLCLALQTPLVSTSCNRAGKRACRTEREV-RRQFGRDV-WIVGGRIGRQKSPSQIIDG 193

Query: 184 QCEKKVR 190
           +  K++R
Sbjct: 194 ETGKRLR 200


>gi|283768245|ref|ZP_06341158.1| Sua5/YciO/YrdC/YwlC family protein [Bulleidia extructa W1219]
 gi|283105122|gb|EFC06493.1| Sua5/YciO/YrdC/YwlC family protein [Bulleidia extructa W1219]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKHASVDPLSLH 82
           +A+PT+TV+G+     +  A   L ++KKRP     P++C  +D+  V +   +      
Sbjct: 22  VAVPTDTVFGVCARYDHIQAQENLRDLKKRPETKAFPIMC--ADMEQVLQICEMCEEEKR 79

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
           +   F PGPLT++L       +         T   R+       ++I   G P+ + SAN
Sbjct: 80  VMNQFMPGPLTMILK--KKKGVPSFVNGGKDTIAIRLATSPILAEMIGKLGVPVYMTSAN 137

Query: 142 RSGQISITNVKHI 154
            SG+ +   V+ +
Sbjct: 138 VSGEPAALTVEDV 150


>gi|296122837|ref|YP_003630615.1| protein-tyrosine phosphatase, low molecular weight [Planctomyces
           limnophilus DSM 3776]
 gi|296015177|gb|ADG68416.1| Protein-tyrosine phosphatase, low molecular weight [Planctomyces
           limnophilus DSM 3776]
          Length = 383

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 21/225 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN------PLICH 63
           + + + C+ L  G  + +PTET Y +A  + +   ++RL  +    A+N       L+  
Sbjct: 15  DVIHRVCQSLAQGELVGLPTETTYTVAASALSEVGVQRLKALATELAVNHQPPQFELLLK 74

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTL---------VLDLLSTTDIHPLSTANLKT 114
            +D ++             L +  WPGP+TL           + L  T  H L TA   T
Sbjct: 75  AADEAL-DYLVEQSRYGRKLIRRCWPGPVTLRFPKSHCGWFFEQLPETSRH-LLTAPENT 132

Query: 115 ACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
             FRVP       ++     PL   S  + G+  + + +          + LI+D G S+
Sbjct: 133 VSFRVPAHTLPADILNLLPGPLIALSEAQPGRPPLRHARDA-DQRFGNNLALIVDDGPSR 191

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKR-AISVELEYCVDET 217
            G   T+V +       I  PG +   T+ R A  V L  C   T
Sbjct: 192 YGEPGTVVQIG-NNDWNIAFPGVVSDRTMGRLASEVILFACTGNT 235


>gi|227111427|ref|ZP_03825083.1| hypothetical protein PcarbP_00610 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S + 
Sbjct: 17  INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP      +L+ 
Sbjct: 77  TYAHVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIALELLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   +    G     +    +   + K++ LII GG   +G + T V    E   
Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQDRLGKQVDLIIHGG--SLGQQPTTVIDLTESAP 192

Query: 190 RILRPG 195
           R+ R G
Sbjct: 193 RVAREG 198


>gi|229496359|ref|ZP_04390079.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316937|gb|EEN82850.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 198

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 27/148 (18%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA-------------M 57
           A+++A + + AG  I  PT+T++GL  D+ N  A++R++ +K R               +
Sbjct: 15  AVQEASKVVKAGGIILYPTDTIWGLGCDATNEEAVQRIFTLKGRAESKAMLLLIDSDAKL 74

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             L+  V DI+     A+V PL+     L +PG   +   L     I P  T  ++    
Sbjct: 75  PGLVREVPDIAYQLIDAAVSPLT-----LIYPGGRNVAPSL-----IAPEGTLGIRITHE 124

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQ 145
                F++ L      PL   SAN SGQ
Sbjct: 125 ----AFSRALCAAVRVPLVSTSANLSGQ 148


>gi|90021364|ref|YP_527191.1| hypothetical protein Sde_1719 [Saccharophagus degradans 2-40]
 gi|89950964|gb|ABD80979.1| Sua5/YciO/YrdC/YwlC [Saccharophagus degradans 2-40]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 15/197 (7%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  SI   N     + ++ + +  G  IA PT++ Y L     +  A+ R+  I++    
Sbjct: 3   QFFSIHPENPQARLISQSVDIVRRGGLIAYPTDSAYALGCHIGDKLALDRIRAIRQLDKD 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKT 114
           +       D+S +  +A VD     L K   PG  T +L   S      +HP      KT
Sbjct: 63  HNFTLMCRDLSELANYAKVDNAVFRLIKSHTPGAYTFILPATSEVPRRLMHP----KRKT 118

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              RVP       L++  G PL   S    G        + +  S+  ++ L+IDGG   
Sbjct: 119 LGLRVPNNPIALALMDALGEPLMSSSLILPGDTVPLTDPYDIRESLEHQLELVIDGGYC- 177

Query: 174 IGLE-STIVNVQCEKKV 189
            G+E +T+V++  ++ V
Sbjct: 178 -GMEPTTVVDLTGDEPV 193


>gi|332139435|ref|YP_004425173.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549457|gb|AEA96175.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 201

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
            +AG  I  PTE V G+  D  N  A+  L +IK+RP    +I   ++ S +  +  VD 
Sbjct: 29  FEAGRLIVYPTEAVMGIGCDPDNEAAVNALLDIKQRPVEKGVILIAANYSQLLPY--VDD 86

Query: 79  LSLHLAK---LF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            ++   +   +F  WPGP T +L   S+  +  L+  + K A           L    G 
Sbjct: 87  NAIRPDRRTDIFSSWPGPNTWLLPKSSSAPVW-LTGKHSKIAVRVTNHPVVVALCNKLGK 145

Query: 134 PLAIPSANRSGQISITNV---KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           PL   SAN +GQ   T+    K + + S+       ++G +      STI +    + +R
Sbjct: 146 PLVSTSANLTGQPPATDTDEAKAVFADSV-----FYVEGKVGGATKPSTIRDGDTAEVIR 200


>gi|311696638|gb|ADP99511.1| Sua5/YciO/YrdC/YwlC family protein [marine bacterium HP15]
          Length = 190

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 2/171 (1%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  IA PTE V+GL  D  +  A+ ++ E+K+RP    +I   S +  V+      P  
Sbjct: 21  GGGVIAYPTEAVWGLGCDPWDQEAVEKVLELKQRPVEKGVILVASSLDQVRFLLDPLPPL 80

Query: 81  LHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
           L   A+  WPGP+T +L          +   +   A         + L E  G PL   S
Sbjct: 81  LRAEAERHWPGPVTCLLPDPERQVPEWVRGKHSSIAVRVSEHPVVRALCEATGMPLVSTS 140

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            N +G+    ++  +       ++  I+ G +      S I+++   +++R
Sbjct: 141 CNPAGRQPARHIWQV-RGYFGDQLDWIVPGALGGNRKPSRIIDIVSGQQLR 190


>gi|283785438|ref|YP_003365303.1| hypothetical protein ROD_17371 [Citrobacter rodentium ICC168]
 gi|282948892|emb|CBG88494.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSDLS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP      +L+ 
Sbjct: 77  TYSFVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALELLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDSP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|257068424|ref|YP_003154679.1| translation factor SUA5 [Brachybacterium faecium DSM 4810]
 gi|256559242|gb|ACU85089.1| translation factor SUA5 [Brachybacterium faecium DSM 4810]
          Length = 211

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 6/170 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L+AG  IA PT++ Y L     N   + R+  I++    +      +D + + + 
Sbjct: 25  QAAAVLEAGGLIAYPTDSCYALGCALGNAEGLERIRRIRQVGKDHHFTLVCADFAQLGQF 84

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
             V   +  L K   PGP T +L   +T ++   +S     T   R+P       L+E  
Sbjct: 85  VLVSNPTFRLVKNATPGPYTFILR--ATREVPRKMSHPKKHTVGVRIPDHRVAHALVEAL 142

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           G P+A  +    GQ        ++   + +++  IID G  ++G E T V
Sbjct: 143 GEPIASSTLLLPGQEEPPTEGWVVQDLLGEQVDAIIDSG--EVGTEPTTV 190


>gi|198245890|ref|YP_002215421.1| hypothetical protein SeD_A1608 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197940406|gb|ACH77739.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L++
Sbjct: 77  TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
           T G P+   S    G     +    +   + K++ LII GG   +G + +T++++  +  
Sbjct: 135 TLGEPMLSTSLMLLGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192

Query: 189 VRILRPG 195
           V +LR G
Sbjct: 193 V-VLREG 198


>gi|152981334|ref|YP_001352969.1| translation factor (SUA5) [Janthinobacterium sp. Marseille]
 gi|151281411|gb|ABR89821.1| translation factor (SUA5) [Janthinobacterium sp. Marseille]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 4/159 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + +  G  +A+PT++ Y L     +  A+ RL  I+     + L     D+S +  +
Sbjct: 19  QAVQIVRDGGIVALPTDSCYALVCHLDDKDAVARLRRIRNVDDKHHLTLLCRDLSEIALY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD     + K   PG  T +L+  +T ++   LS  + KT   RVP       L+E  
Sbjct: 79  AKVDNQQYRMLKAATPGAYTFILE--ATKEVPRRLSHPSRKTIGLRVPENRIVHALLEEL 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             PL   +    G+         +   + K + L+IDGG
Sbjct: 137 AQPLLGTTLILPGEDEPLTDPEDVRDRLNKVVDLVIDGG 175


>gi|298372929|ref|ZP_06982919.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275833|gb|EFI17384.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 212

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 8/191 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           + + + K  E L  G  I  PT+TVY    D  +P AI ++  +K   P  + +     D
Sbjct: 22  NEHQIAKVIEVLKNGGVIIYPTDTVYAFGCDIFHPKAIEKICRLKHLNPQKSRMAIVCQD 81

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +S +  +A +   +  L K   PG  T    LL+ +   P    + KT   R+P      
Sbjct: 82  LSNISNYAKISTDTFKLLKKNLPGAFTF---LLNGSRQLPSILKDRKTIGIRMPKNNIAL 138

Query: 126 KLIETYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            ++   G+P+   S      I+       +L+      + ++IDGG       STIV+  
Sbjct: 139 DIVRQLGNPIFTTSVIAIDDITEYETDPELLTEKYEDVVDMVIDGGFGD-NTPSTIVDC- 196

Query: 185 CEKKVRILRPG 195
            + +  I+R G
Sbjct: 197 TQNEPEIIRQG 207


>gi|22125943|ref|NP_669366.1| hypothetical protein y2053 [Yersinia pestis KIM 10]
 gi|45441809|ref|NP_993348.1| hypothetical protein YP_2009 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596460|ref|YP_070651.1| hypothetical protein YPTB2134 [Yersinia pseudotuberculosis IP
           32953]
 gi|108807565|ref|YP_651481.1| hypothetical protein YPA_1570 [Yersinia pestis Antiqua]
 gi|108811841|ref|YP_647608.1| hypothetical protein YPN_1679 [Yersinia pestis Nepal516]
 gi|145598220|ref|YP_001162296.1| hypothetical protein YPDSF_0923 [Yersinia pestis Pestoides F]
 gi|149365869|ref|ZP_01887904.1| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125]
 gi|153949288|ref|YP_001400904.1| hypothetical protein YpsIP31758_1929 [Yersinia pseudotuberculosis
           IP 31758]
 gi|165927411|ref|ZP_02223243.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938161|ref|ZP_02226720.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010763|ref|ZP_02231661.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210525|ref|ZP_02236560.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167400845|ref|ZP_02306351.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420278|ref|ZP_02312031.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425046|ref|ZP_02316799.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470516|ref|ZP_02335220.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis FV-1]
 gi|170024275|ref|YP_001720780.1| hypothetical protein YPK_2040 [Yersinia pseudotuberculosis YPIII]
 gi|186895509|ref|YP_001872621.1| hypothetical protein YPTS_2203 [Yersinia pseudotuberculosis PB1/+]
 gi|218929308|ref|YP_002347183.1| hypothetical protein YPO2212 [Yersinia pestis CO92]
 gi|229894896|ref|ZP_04510074.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
 gi|229897639|ref|ZP_04512795.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229898284|ref|ZP_04513431.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229902143|ref|ZP_04517264.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
 gi|270490617|ref|ZP_06207691.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27]
 gi|294503750|ref|YP_003567812.1| hypothetical protein YPZ3_1640 [Yersinia pestis Z176003]
 gi|21958883|gb|AAM85617.1|AE013807_11 hypothetical protein y2053 [Yersinia pestis KIM 10]
 gi|45436671|gb|AAS62225.1| Putative translation factor (SUA5) [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51589742|emb|CAH21372.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108775489|gb|ABG18008.1| translation factor SUA5 [Yersinia pestis Nepal516]
 gi|108779478|gb|ABG13536.1| translation factor SUA5 [Yersinia pestis Antiqua]
 gi|115347919|emb|CAL20841.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209916|gb|ABP39323.1| translation factor SUA5 [Yersinia pestis Pestoides F]
 gi|149292282|gb|EDM42356.1| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125]
 gi|152960783|gb|ABS48244.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis IP
           31758]
 gi|165913822|gb|EDR32440.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920677|gb|EDR37925.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990465|gb|EDR42766.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207705|gb|EDR52185.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961973|gb|EDR57994.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049698|gb|EDR61106.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056233|gb|EDR66011.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750809|gb|ACA68327.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186698535|gb|ACC89164.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681039|gb|EEO77134.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
 gi|229688574|gb|EEO80643.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693976|gb|EEO84025.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701991|gb|EEO90012.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
 gi|262362130|gb|ACY58851.1| hypothetical protein YPD4_1944 [Yersinia pestis D106004]
 gi|262365459|gb|ACY62016.1| hypothetical protein YPD8_1331 [Yersinia pestis D182038]
 gi|270339121|gb|EFA49898.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27]
 gi|294354209|gb|ADE64550.1| hypothetical protein YPZ3_1640 [Yersinia pestis Z176003]
 gi|320014877|gb|ADV98448.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S + 
Sbjct: 17  INQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L++
Sbjct: 77  TYAYVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +  ++ K++ LII GG   +G + T V    +   
Sbjct: 135 ALGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGG--SLGQQPTTVIDLTDSAP 192

Query: 190 RILRPGGLEIETLK 203
            ++R G  ++   +
Sbjct: 193 EVIREGAGDVTPFR 206


>gi|307824289|ref|ZP_07654515.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacter tundripaludum
           SV96]
 gi|307734669|gb|EFO05520.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacter tundripaludum
           SV96]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 12/189 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + +A + +  G  I  PT++ Y +A    D +    IRR+ ++  +     L+C   D++
Sbjct: 17  IHRAVDIIRKGGVIVYPTDSSYAIACQIGDKQALDKIRRIRQLDDKHNFT-LVC--KDLT 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126
            V     +   +  L K   PG  T +L+  +T ++   L     KT   RVP     + 
Sbjct: 74  QVSMFTKISNDAYRLIKALTPGAFTFILE--ATREVPRRLQHPKKKTVGIRVPDHPVAQL 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G PL   +    G+       + + + +  E+ LIID GI  I  E T +     
Sbjct: 132 LVQELGEPLFSSTLMLPGEDEALTDPYEIRNKLEHELDLIIDAGI--IEFEQTTIIEFSS 189

Query: 187 KKVRILRPG 195
             V I+R G
Sbjct: 190 SGVEIIRQG 198


>gi|269215181|ref|ZP_05987872.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria lactamica ATCC 23970]
 gi|269208121|gb|EEZ74576.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria lactamica ATCC 23970]
          Length = 250

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+  E L+ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 61  IRQVVEILNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 120

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 121 TYAEIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 168


>gi|91786903|ref|YP_547855.1| Sua5/YciO/YrdC/YwlC [Polaromonas sp. JS666]
 gi|91696128|gb|ABE42957.1| Sua5/YciO/YrdC/YwlC [Polaromonas sp. JS666]
          Length = 215

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           L++A   L  G   A+PT++ Y L     D     ++RR+  +  +  +  L+C   D+S
Sbjct: 17  LKQAVNLLARGGVAAVPTDSSYALVCHLDDKAAADSLRRIRGVDDKHHLT-LLC--RDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD     L K   PGP T +L+  S      LS  + KT   RVP   T + L
Sbjct: 74  ELANYARVDNKQFRLLKAATPGPYTFILE-ASKEVPRRLSHPSRKTIGLRVPGHKTLQAL 132

Query: 128 IETYGHPLA-----IPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           +E +G PL      +P  +      + + + I    +  E+  +ID G
Sbjct: 133 LELHGAPLLATTLILPGPDNPPHEPLNDARDI-RDQLEHELAAVIDAG 179


>gi|299771934|ref|YP_003733960.1| Protein yrdC [Acinetobacter sp. DR1]
 gi|298702022|gb|ADI92587.1| Protein yrdC [Acinetobacter sp. DR1]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3  TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|159031016|emb|CAO88719.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 195

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS----MVKKHASV 76
           +G  ++ PT+TV  LAV   +P     ++  KKR    PLI   +  +     VK +   
Sbjct: 15  SGQVVSFPTDTVPALAV---SPPYAALVFAAKKRTFDKPLILMAASAADLWDYVKGNQEE 71

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   + + +WPG LTLVL   S      L+  +  T   RVP     + I      LA
Sbjct: 72  REIWRQMTEKYWPGSLTLVLP-ASEKVPKVLNPKDSSTIGIRVPAHAIAREILGRTGVLA 130

Query: 137 IPSANRSGQISITNVKHILSS--SICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
             SAN SGQ  +   + I+++  S+    P      GI   G  ST+   QC++   ILR
Sbjct: 131 TTSANLSGQEPLLTPEAIMTTFPSVTVLAPTERQAWGIINSGQPSTVARWQCQRW-DILR 189

Query: 194 PGGL 197
            G +
Sbjct: 190 QGAV 193


>gi|52425092|ref|YP_088229.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307144|gb|AAU37644.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 19/193 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  I  PT++ Y L     +  A+ R+ +I+  P  +      SD+S + 
Sbjct: 17  INQAVDILRNGGVIVYPTDSGYALGCMIGDKRAMDRIVQIRHLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V   +  L K   PG  T +L   +T ++   L T+  KT   RVP       L+ 
Sbjct: 77  TYSLVTNTAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALDLLR 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLESTIVN 182
           T G P+       S  + + N +HI  S        +  ++ LII GG   +G E T V 
Sbjct: 135 TLGEPIL------SCSLMLPNEEHITQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVV 186

Query: 183 VQCEKKVRILRPG 195
              E+   ILR G
Sbjct: 187 DLTEETPVILREG 199


>gi|149638532|ref|XP_001511974.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 148

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 14/99 (14%)

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
           PLS+ + +    R+P   F ++L++ +  PLA+ SAN S Q S   VK      +  ++ 
Sbjct: 31  PLSSGS-QLVGIRIPRHAFMRQLVQKFSGPLALTSANVSSQASSLTVKEF--RDLWPQLS 87

Query: 165 LIIDGGISKIG--------LESTIVNVQCEKKVRILRPG 195
           LI+DGG   IG        L ST+V++    K  ++RPG
Sbjct: 88  LIVDGG--PIGDVQSPECRLGSTVVDLSVPGKFSVIRPG 124


>gi|145596153|ref|YP_001160450.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440]
 gi|145305490|gb|ABP56072.1| translation factor SUA5 [Salinispora tropica CNB-440]
          Length = 236

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 87/182 (47%), Gaps = 4/182 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           + +PT+TVYG+  D+  P A++ L + K    + P +   S  ++     S+   +  L 
Sbjct: 50  VVLPTDTVYGIGADAFTPHAVKALLDAKGGQPVPPPVLIGSRHTLDGLVFSLPSAARDLV 109

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
           + FWPG LT+V++  S +    L   + + A  R+P       +     P+A+ SAN +G
Sbjct: 110 EAFWPGALTIVVE-HSPSLRWDLGETSGRVAV-RMPLHPVALEVLRETGPMAVASANTAG 167

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204
             + T  +      +   +   ++ G +   + STIV++      +++R G ++++ L+ 
Sbjct: 168 LPAATTAEAA-RGQLAYSVRTYLEAGPAVDPVPSTIVDLTGAVP-QLIRAGAIDLDRLRD 225

Query: 205 AI 206
            +
Sbjct: 226 VV 227


>gi|294790664|ref|ZP_06755822.1| Sua5/YciO/YrdC/YwlC family protein [Scardovia inopinata F0304]
 gi|294458561|gb|EFG26914.1| Sua5/YciO/YrdC/YwlC family protein [Scardovia inopinata F0304]
          Length = 322

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 2   QIMSITDSNALRKA----CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ + D ++L K      E + +G    IPT+TVYGL  D  + +A++ ++  K RP  
Sbjct: 4   KILPLYDGDSLEKTVQTVTEAIRSGKTAVIPTDTVYGLVADPLSVSAVQGIFRAKHRPPE 63

Query: 58  NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLST 101
             +    S+    +K   + P +   L  +F PG L LV  ++ST
Sbjct: 64  KTVQILCSNPDQARKLGLIIPHIYEQLLDIFPPGSLCLVCSVIST 108


>gi|149190890|ref|ZP_01869153.1| hypothetical protein VSAK1_01032 [Vibrio shilonii AK1]
 gi|148835245|gb|EDL52219.1| hypothetical protein VSAK1_01032 [Vibrio shilonii AK1]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  I  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIVRNGGVIIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L     KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNPKRKTIGIRVPDNQIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +   +   +  I++GG   +G + T V    + + 
Sbjct: 135 ALGEPLMSTSLILPGNEVTESDPEEIRDQLEHAVDCILNGGY--LGEQPTTVIDFSDDEA 192

Query: 190 RILRPG 195
           ++LR G
Sbjct: 193 KVLRTG 198


>gi|308187010|ref|YP_003931141.1| hypothetical protein Pvag_1502 [Pantoea vagans C9-1]
 gi|308057520|gb|ADO09692.1| Uncharacterized protein yciO [Pantoea vagans C9-1]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A ++L+ G  I  PT++ Y L        A+ R+  I++    +       D+S + 
Sbjct: 17  INQAVDYLNKGSVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V   +  L K   PG  T +L   +T ++   L     KT   RVP       L+E
Sbjct: 77  VYSQVGNSAFRLLKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPVALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +  SI K + LIIDGG   +G + T V        
Sbjct: 135 ALNQPMMSTSLILPGNDFTESDPEEIQHSIGKLVDLIIDGGT--LGQQPTTVVDLTTDSP 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 EIVREG 198


>gi|325124149|gb|ADY83672.1| putative SUA5/YciO/YrdC/YwlC family protein [Acinetobacter
          calcoaceticus PHEA-2]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3  TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|291617617|ref|YP_003520359.1| YciO [Pantoea ananatis LMG 20103]
 gi|291152647|gb|ADD77231.1| YciO [Pantoea ananatis LMG 20103]
 gi|327394045|dbj|BAK11467.1| protein YciO [Pantoea ananatis AJ13355]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E+L+ G  I  PT++ Y L        A+ R+  I++    +       D+S + 
Sbjct: 17  INQAVEYLNKGGVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V   +  L K   PG  T +L   +T ++   L     KT   RVP       L+E
Sbjct: 77  VYSQVGNSAFRLLKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPVALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               P+   S    G     +    +  SI K + LIIDGG   +G + T V
Sbjct: 135 ALNEPMMSTSLILPGNDFTESDPEDIQHSIGKLVDLIIDGG--TLGQQPTTV 184


>gi|169632175|ref|YP_001705911.1| putative ribosome maturation factor (dsRNA-binding protein)
          (RimN) [Acinetobacter baumannii SDF]
 gi|169797636|ref|YP_001715429.1| putative ribosome maturation factor (dsRNA-binding protein)
          (RimN) [Acinetobacter baumannii AYE]
 gi|184156507|ref|YP_001844846.1| putative translation factor (SUA5) [Acinetobacter baumannii
          ACICU]
 gi|213155570|ref|YP_002317615.1| protein YrdC [Acinetobacter baumannii AB0057]
 gi|215484990|ref|YP_002327231.1| Protein yrdC [Acinetobacter baumannii AB307-0294]
 gi|260557579|ref|ZP_05829793.1| yrdC [Acinetobacter baumannii ATCC 19606]
 gi|301346865|ref|ZP_07227606.1| Protein yrdC [Acinetobacter baumannii AB056]
 gi|301512293|ref|ZP_07237530.1| Protein yrdC [Acinetobacter baumannii AB058]
 gi|301594507|ref|ZP_07239515.1| Protein yrdC [Acinetobacter baumannii AB059]
 gi|332852662|ref|ZP_08434316.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
          6013150]
 gi|332869378|ref|ZP_08438756.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
          6013113]
 gi|332875641|ref|ZP_08443453.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
          6014059]
 gi|212277661|sp|B2I111|RIMN_ACIBC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|212277662|sp|B0VNL3|RIMN_ACIBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|212277670|sp|B0VCB7|RIMN_ACIBY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|212277730|sp|A3M154|RIMN_ACIBT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|169150563|emb|CAM88472.1| putative ribosome maturation factor (dsRNA-binding protein)
          (RimN) [Acinetobacter baumannii AYE]
 gi|169150967|emb|CAO99583.1| putative ribosome maturation factor (dsRNA-binding protein)
          (RimN) [Acinetobacter baumannii]
 gi|183208101|gb|ACC55499.1| putative translation factor (SUA5) [Acinetobacter baumannii
          ACICU]
 gi|193076053|gb|ABO10648.2| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter
          baumannii ATCC 17978]
 gi|213054730|gb|ACJ39632.1| protein YrdC [Acinetobacter baumannii AB0057]
 gi|213988323|gb|ACJ58622.1| Protein yrdC [Acinetobacter baumannii AB307-0294]
 gi|260408752|gb|EEX02056.1| yrdC [Acinetobacter baumannii ATCC 19606]
 gi|322506375|gb|ADX01829.1| Putative ribosome maturation factor [Acinetobacter baumannii
          1656-2]
 gi|323516243|gb|ADX90624.1| putative translation factor (SUA5) [Acinetobacter baumannii
          TCDC-AB0715]
 gi|332729130|gb|EGJ60477.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
          6013150]
 gi|332732796|gb|EGJ64012.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
          6013113]
 gi|332736214|gb|EGJ67229.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
          6014059]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3  TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|330881429|gb|EGH15578.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTISLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|312971455|ref|ZP_07785630.1| yrdC domain protein [Escherichia coli 1827-70]
 gi|310336052|gb|EFQ01252.1| yrdC domain protein [Escherichia coli 1827-70]
 gi|323187498|gb|EFZ72807.1| yrdC domain protein [Escherichia coli RN587/1]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT++ Y L     +  A+ R+  I++ P  +       D+S +  ++ VD ++  L 
Sbjct: 7   IVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLM 66

Query: 85  KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           K   PG  T +L    T ++   L     KT   RVP     + L+E  G P+   S   
Sbjct: 67  KNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLML 124

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGG 170
            G     +    +   + K++ LII GG
Sbjct: 125 PGSEFTESDPEEIKDRLEKQVDLIIHGG 152


>gi|239503034|ref|ZP_04662344.1| Protein yrdC [Acinetobacter baumannii AB900]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3  TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|602960|gb|AAB59987.1| ORF1 [Escherichia coli str. K-12 substr. W3110]
          Length = 183

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 4/148 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT++ Y L     +  A+ R+  I++ P  +       D+S +  ++ VD ++  L 
Sbjct: 7   IVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLM 66

Query: 85  KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           K   PG  T +L    T ++   L     KT   RVP     + L+E  G P+   S   
Sbjct: 67  KNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLML 124

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGG 170
            G     +    +   + K++ LII GG
Sbjct: 125 PGSEFTESDPEEIKDRLEKQVDLIIHGG 152


>gi|269959634|ref|ZP_06174014.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835557|gb|EEZ89636.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   + +G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRSGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYARVDNAAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   +   + +I++GG   +G + T V    E + 
Sbjct: 135 ALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTVIDFSEGEA 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARVG 198


>gi|308050243|ref|YP_003913809.1| translation factor SUA5 [Ferrimonas balearica DSM 9799]
 gi|307632433|gb|ADN76735.1| translation factor SUA5 [Ferrimonas balearica DSM 9799]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 6/189 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A   +  G  I  PT++ Y L     + +A+ R+  I++    +       D+S
Sbjct: 14  SRLINQAVATIHKGGVIVYPTDSGYALGCHIGDKSALERICRIRRLNEHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKK 126
            +  +A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       
Sbjct: 74  ELSLYARVDNAAFRLLKNNTPGPYTFIFK--GTKEVPRRLLNAKRKTIGIRVPDNNIALA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G P+   S    G+    +    +   +  ++ LI+ GG   +G   T V    E
Sbjct: 132 LLEALGEPMMSTSLILPGETLAESDPDDIRDKLEHQVDLILHGGF--LGESPTTVVDFSE 189

Query: 187 KKVRILRPG 195
            +  I+R G
Sbjct: 190 GEGEIVRVG 198


>gi|148652264|ref|YP_001279357.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. PRwf-1]
 gi|148571348|gb|ABQ93407.1| translation factor SUA5 [Psychrobacter sp. PRwf-1]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+T Y       +  AI +L  I++    +       D+S +  +A+VD     L 
Sbjct: 29  IVYPTDTSYAFGCKIGSKEAIEKLRLIRQLDDKHQFTLLCRDLSEIATYATVDNQQFKLL 88

Query: 85  KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           K   P P+T +LD  +T D+   LS    KT   RVP     + L+E  G P+
Sbjct: 89  KASTPAPITFILD--ATKDVPKKLSHPKKKTIGIRVPSNPIAQMLLEAMGEPI 139


>gi|304396084|ref|ZP_07377966.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. aB]
 gi|304356453|gb|EFM20818.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. aB]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A ++L+ G  I  PT++ Y L        A+ R+  I++    +       D+S + 
Sbjct: 17  INQAVDYLNKGSVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V   +  L K   PG  T +L   +T ++   L     KT   RVP       L+E
Sbjct: 77  VYSQVGNSAFRLLKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPVALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +  SI K + LIIDGG   +G + T V        
Sbjct: 135 ALNQPMMSTSLILPGNDFTESDPEEIQHSIGKLVDLIIDGGT--LGQQPTTVVDLTTDAP 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 EIVREG 198


>gi|261365262|ref|ZP_05978145.1| protein RimN [Neisseria mucosa ATCC 25996]
 gi|288566351|gb|EFC87911.1| protein RimN [Neisseria mucosa ATCC 25996]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC--- 62
           I  ++ L K    L  G  +A PTE+ YG+      P A+ RL  +KKRP    +I    
Sbjct: 6   ILSASTLCKLQSHLKKGGLVAYPTESCYGIGCIPTLPKALNRLIHLKKRPQHKGMIVIGN 65

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121
            +  +  + K +S +  +  + +  WP P T +L   +  D+ P L          RVP 
Sbjct: 66  QLEQLQPLLKRSSENIQT--MLRNEWPAPKTFLLP--AAADVLPALRGKGRSKLAVRVPA 121

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQ 145
               ++L +    PL   S NR+G+
Sbjct: 122 HAGARRLCQALKTPLVSTSCNRAGK 146


>gi|291515259|emb|CBK64469.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes shahii WAL 8301]
          Length = 193

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   + AG  I  PT+TV+GL  D+ +  A+ R+Y +K+      ++   +   M+ ++
Sbjct: 13  EAVRTMRAGGIILYPTDTVWGLGCDATSAAAVERIYRLKRSGNKKSMLVLCASADMIVRY 72

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
            +  P ++  + +L    PLT +L       +      +  T   R+P   F ++++   
Sbjct: 73  VNKAPGIAFEVMELA-TSPLTAILP--GAAGLAENLIPDEGTLGVRIPDHEFCRRMLRAL 129

Query: 132 GHPLAIPSANRSGQISITNVKHI 154
           G P+   SAN SG+ +   ++ +
Sbjct: 130 GRPIVSTSANISGEATPVGLQDV 152


>gi|320323237|gb|EFW79325.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329732|gb|EFW85721.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 30  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 90  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTISLRVPSHPIAQAL 145

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 146 LEQLGEPL 153


>gi|297626391|ref|YP_003688154.1| Sua5_yciO_yrdC [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922156|emb|CBL56724.1| Sua5_yciO_yrdC [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +  + L  G  IA PT++ + L     N   I  +  I+     + L   VS+ +
Sbjct: 14  ARSIHQVADLLREGAVIAYPTDSGFALGTLFGNKEGIDTMRRIRDLDERHHLSVVVSEFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
            + ++  +D       K   PGP T +  L +T ++        KT   RVP   T   L
Sbjct: 74  QLGRYVDMDNREFRAIKASTPGPFTFI--LRATREVPRSMQHPNKTVGVRVPDHVTALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCE 186
           ++    PL   +    GQ    +    +  ++  +I  ++D G   +G + +T+V++  E
Sbjct: 132 LDELDEPLVSSTLILPGQEEPMSEGWQIKEALDNDIAAVLDSG--DVGHVPTTVVDLTGE 189

Query: 187 KKVRILRPGG 196
           + V + R GG
Sbjct: 190 EPVVVRRGGG 199


>gi|260789486|ref|XP_002589777.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae]
 gi|229274960|gb|EEN45788.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae]
          Length = 145

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 13/122 (10%)

Query: 81  LHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137
           + L +   PGP+T+V+   +   T+++P    +      RVP   F ++L ET   P+A+
Sbjct: 1   MELLQDLLPGPVTVVMQRTAALNTNLNP----STDLVGIRVPQHKFMRQLAETCMEPIAL 56

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNVQCEKKVRILR 193
            SAN S   +  +++     ++  ++ L++DGG       +   ST+V++  E + R+LR
Sbjct: 57  TSANTSAAGNTIDIQEF--ENLWPQLDLVLDGGRLESTQAVREGSTVVDLSVEGQFRVLR 114

Query: 194 PG 195
            G
Sbjct: 115 VG 116


>gi|253688396|ref|YP_003017586.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754974|gb|ACT13050.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 206

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S + 
Sbjct: 17  INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP      +L+ 
Sbjct: 77  TYAHVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIALELLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   +    G     +    +   + K++ LII GG   +G + T V    E   
Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQEILGKQVDLIIHGG--SLGQQPTTVIDLTESAP 192

Query: 190 RILRPG 195
           R+ R G
Sbjct: 193 RVAREG 198


>gi|304310659|ref|YP_003810257.1| Putative translation factor (SUA5) [gamma proteobacterium HdN1]
 gi|301796392|emb|CBL44600.1| Putative translation factor (SUA5) [gamma proteobacterium HdN1]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 11/177 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   L  G  I  PT+  Y       N +A+ R+ +I++  + +       ++S + 
Sbjct: 17  IQQAVNILRDGGVIVYPTDAAYAFGCTVGNKSALERIVQIRQLGSKHNFTIACHNLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD     L K   PGP T +L   +      +HP      KT   R+P       L
Sbjct: 77  TYARVDNQVFRLLKNNTPGPYTFILAATAEVPRRLMHP----KRKTVGLRIPDNKIALAL 132

Query: 128 IETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +E  G PL   +     +   + + + IL   + + I L+IDGG  +    +T+V++
Sbjct: 133 LEALGEPLMTTTLIMPNESEPLVDPEEIL-ELLSRRIELVIDGGWGETS-TTTVVDL 187


>gi|74317545|ref|YP_315285.1| putative translation factor Sua5 [Thiobacillus denitrificans ATCC
           25259]
 gi|74057040|gb|AAZ97480.1| putative translation factor Sua5 [Thiobacillus denitrificans ATCC
           25259]
          Length = 207

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 5/177 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  + L  G  I  PT++ Y L     +  A  RL  ++     + L     D+S + 
Sbjct: 17  IQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLDTGHDLTLVCRDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
           ++A VD     L K   PGP T +L    T ++   L      T   RVP     + L+E
Sbjct: 77  RYAQVDNAQFRLLKAHTPGPYTFILR--GTREVPRRLLHKRHDTIGLRVPAHPLVQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
             G P+   +    G+         +   +  ++ L+IDGG   +   +T+V++  E
Sbjct: 135 GLGEPILSSTLLLYGEDVPLTEPWEIRERLEHQVDLVIDGGACGL-TPTTVVDLTAE 190


>gi|109896360|ref|YP_659615.1| SUA5/yciO/yrdC-like [Pseudoalteromonas atlantica T6c]
 gi|123065188|sp|Q15ZX7|RIMN_PSEA6 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|109698641|gb|ABG38561.1| translation factor SUA5 [Pseudoalteromonas atlantica T6c]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 20/161 (12%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG   A PTE V+GL  D  N  A+ +L  +K+R     LI    + S +  +  VD  +
Sbjct: 16  AGKVFAYPTEAVFGLGCDPDNEQAVNKLLALKQRDVSKGLILVGDNYSQLLPY--VDDSA 73

Query: 81  LHLAK---LF--WPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIETYGH 133
           + + K   +F  WPGP+T    LL  +   P   T   +    RV      K L +    
Sbjct: 74  IKMTKRTEIFSSWPGPITW---LLPKSKTAPSWVTGESEFIAVRVSAHPLIKDLCQRANK 130

Query: 134 PLAIPSANRSGQ---ISITNVKHILSSSICKEIPLIIDGGI 171
           PL   SAN +G    +S   V    S+ +     ++IDG +
Sbjct: 131 PLVSTSANTAGHPPALSADEVTSYFSNQV-----ILIDGSL 166


>gi|262281298|ref|ZP_06059079.1| DsRNA-binding protein [Acinetobacter calcoaceticus RUH2202]
 gi|262257124|gb|EEY75861.1| DsRNA-binding protein [Acinetobacter calcoaceticus RUH2202]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3  TTSVTEAAESLHQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|121608594|ref|YP_996401.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553234|gb|ABM57383.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 211

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+A   L  G  +A+PT++ Y LA    +  A  RL  I++    + L     D+S + 
Sbjct: 17  LRQAAALLRQGGIVAVPTDSSYALACHLDDKDAAERLRRIRQVDDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP 120
             A VD     L +L  PGP T +L+  +T ++   +S    KT   RVP
Sbjct: 77  SCARVDNRQYRLLRLGTPGPYTFILE--ATREVPRRVSHPARKTLGLRVP 124


>gi|332304414|ref|YP_004432265.1| SUA5/yciO/yrdC domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
 gi|332171743|gb|AEE20997.1| SUA5/yciO/yrdC domain protein [Glaciecola agarilytica
          4H-3-7+YE-5]
          Length = 187

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
          +FL AG   A PTE V+GL  D  N  A+ +L  +K+R     LI    + S +  + + 
Sbjct: 13 DFL-AGKVFAYPTEAVFGLGCDPDNEQAVSKLLLLKERDVSKGLILVADNYSQLLPYVND 71

Query: 77 DPLSL-HLAKLF--WPGPLTLVL 96
          D + +    ++F  WPGP+T +L
Sbjct: 72 DAIKMTKRTEIFSSWPGPVTWLL 94


>gi|238786121|ref|ZP_04630076.1| hypothetical protein yberc0001_36560 [Yersinia bercovieri ATCC
           43970]
 gi|238712973|gb|EEQ05030.1| hypothetical protein yberc0001_36560 [Yersinia bercovieri ATCC
           43970]
          Length = 178

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 6/173 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PT++ Y L     + TA+ R+  I++    +       D+S +  +A VD  +  L 
Sbjct: 2   VVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVDNSAFRLI 61

Query: 85  KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           K   PG  T +L   +T ++   L     KT   RVP       L++  G PL   +   
Sbjct: 62  KNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLDVLGEPLMSTTLML 119

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            G     +    +   + K++ LII GG   +G + T V    +  V ++R G
Sbjct: 120 PGNDFAESDPEEIKEHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSVAVIREG 170


>gi|281207352|gb|EFA81535.1| brix domain-containing protein [Polysphondylium pallidum PN500]
          Length = 592

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   D   + +A   + +G  ++ PTETVYGL  ++ +  A+  ++  K RP  +P+I 
Sbjct: 88  IVDSLDDQVMLEAANKIKSGGLVSFPTETVYGLGANAFDTDAVLSIFTAKGRPLTDPVIV 147

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD 103
           H+ +   VK+H         L   + P     +L  + T D
Sbjct: 148 HLQN--SVKQHQQGQEAPGQLLTHYAPDIQAYILKDIITDD 186


>gi|77456248|ref|YP_345753.1| SUA5/yciO/yrdC-like [Pseudomonas fluorescens Pf0-1]
 gi|123606494|sp|Q3KKE2|RIMN_PSEPF RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|77380251|gb|ABA71764.1| translation factor SUA5 [Pseudomonas fluorescens Pf0-1]
          Length = 185

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 13/145 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    
Sbjct: 1   MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD 60

Query: 66  DISMVKKHASVDPLSL--HLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA--- 115
           +I          P      +A   WPGP T ++   +LL    T +H   T  L+ +   
Sbjct: 61  NIRQFDFLFEDFPQDWIDRMAST-WPGPNTWLVPHQNLLPEWVTGVH--DTVALRVSDHP 117

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSA 140
             R  C     LI T  +P   P+A
Sbjct: 118 QVRDLCSLVGPLISTSANPQGRPAA 142


>gi|331012312|gb|EGH92368.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|330866210|gb|EGH00919.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|116075870|ref|ZP_01473129.1| hypothetical protein RS9916_40431 [Synechococcus sp. RS9916]
 gi|116067185|gb|EAU72940.1| hypothetical protein RS9916_40431 [Synechococcus sp. RS9916]
          Length = 217

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 26/202 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  ++A+ +      AGL   +PT+T+  L      P   R+++ +K+RP+  PLI   +
Sbjct: 15  VCSTDAMARCLLAGGAGL---MPTDTLPALIA---LPGHARQIWTLKQRPSEKPLILMAA 68

Query: 66  DISMV------KKHASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTA 115
           +   +      +  A+  PL    A+L WPG LT+VL    D L+ + +  L+     T 
Sbjct: 69  NAEALLALVRPEAQAAARPL----AQLHWPGALTMVLPIAGDALAQSWLRALNP-GATTL 123

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SK 173
             RVP C   ++L+   G PLA  SAN SG  +        +     ++PL+      + 
Sbjct: 124 GLRVPACAQARQLLARTG-PLATTSANPSGDAAALTAAQ--AHCYFPDLPLLGPTPWPAP 180

Query: 174 IGLESTIVNVQCEKKVRILRPG 195
            GL ST++  Q     + LR G
Sbjct: 181 QGLASTVLAWQDSGSWQTLRAG 202


>gi|330972285|gb|EGH72351.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|71738162|ref|YP_275690.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558715|gb|AAZ37926.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|289677279|ref|ZP_06498169.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae FF5]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 30  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 90  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 146 LEQLGEPL 153


>gi|298488128|ref|ZP_07006165.1| predicted RNA-binding protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157407|gb|EFH98490.1| predicted RNA-binding protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330989191|gb|EGH87294.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|260598146|ref|YP_003210717.1| hypothetical protein CTU_23540 [Cronobacter turicensis z3032]
 gi|260217323|emb|CBA31309.1| Uncharacterized protein yciO [Cronobacter turicensis z3032]
          Length = 206

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  IKQAVEIVRKGGVIVYPTDSGYALGCKLEDKGAMERICRIRDLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L+E
Sbjct: 77  TYSYVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   S    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 ALDEPMLSTSLMLPGSDFTESDPDEIKDRLEKQVDLIIHGGY--LGQQPTTVVDLTDDAP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|260554284|ref|ZP_05826534.1| yrdC [Acinetobacter sp. RUH2624]
 gi|260404593|gb|EEW98113.1| yrdC [Acinetobacter sp. RUH2624]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A E L  G  +A PTE V+GL  D  N  A +++ ++K+RP    +I   S IS
Sbjct: 3  TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILKLKQRPIEKGVILLASHIS 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|255065428|ref|ZP_05317283.1| protein RimN [Neisseria sicca ATCC 29256]
 gi|255050253|gb|EET45717.1| protein RimN [Neisseria sicca ATCC 29256]
          Length = 199

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 11/190 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC--- 62
           I  ++ LRK    L  G  +A PTE+ YG+      P A+ RL  +KKRP    +I    
Sbjct: 16  ILSASTLRKLQSHLKKGGLVAYPTESCYGIGCIPTLPKALNRLIHLKKRPQHKGMIVIGN 75

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPC 121
            +  +  + K +S +  +  + +  WP P T +L   +  D+ P L          RVP 
Sbjct: 76  QLEQLQPLLKRSSENIQT--MLRNEWPAPKTFLLP--AAADVLPALRGKGRSKLAVRVPA 131

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               ++L       L   S NR+G+ +    + +      +++  ++ G I K    S I
Sbjct: 132 HAGARRLCRALKTSLVSTSCNRAGKRACKTEREV-RRQFGRDV-WVVGGLIGKQKSPSQI 189

Query: 181 VNVQCEKKVR 190
           ++ +   ++R
Sbjct: 190 IDGETGVRLR 199


>gi|78778710|ref|YP_396822.1| hypothetical protein PMT9312_0325 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712209|gb|ABB49386.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 193

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 21/206 (10%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M++ DS   + A + L +GLPI  PT+T+  +      P     +Y+ KKR    PLI  
Sbjct: 1   MNLVDS---KSALKTLTSGLPIIFPTDTLPAIGC---LPKFSNIIYDYKKRDRNKPLILM 54

Query: 64  VSDISMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
            S+   +    H S      ++A  +WPG LT+V+   S+     + T+   T   R+P 
Sbjct: 55  GSEYKQLIDYVHESAKEDYENIASKYWPGALTMVIP--SSEKQTGILTSKDLTLGLRIPN 112

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHIL----SSSICKEIPLIIDGGISKIGL 176
               + L++  G PL   SAN SG         I     S  I + IP     G +    
Sbjct: 113 FHMAQSLLKETG-PLLTSSANISGLTGSITADGIALDFPSVEILEPIPWEKSSGKA---- 167

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            STI+  +     R++R G + +  L
Sbjct: 168 -STIIFWKKSGDWRLIREGEVLVREL 192


>gi|66046814|ref|YP_236655.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae B728a]
 gi|63257521|gb|AAY38617.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae B728a]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 30  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 90  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 146 LEQLGEPL 153


>gi|302188867|ref|ZP_07265540.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae 642]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 30  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 90  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 146 LEQLGEPL 153


>gi|257465550|ref|ZP_05629921.1| hypothetical protein AM202_03495 [Actinobacillus minor 202]
 gi|257451210|gb|EEV25253.1| hypothetical protein AM202_03495 [Actinobacillus minor 202]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 5/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +     I  PT++ Y L     N +A+ R+ +I+K P  +      SD+S + 
Sbjct: 17  INQAVEIIKNDGVIVYPTDSGYALGCAIGNKSAMERIVKIRKLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V   +  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  NYAMVSNQAYRLIKNNVPNPYTFILP--ATKDVPRRLLTKRKTIGIRVPQNEIALALISA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   S     +    +    +   + +++ LII GG   +G E T V    +    
Sbjct: 135 LGEPILSCSLMLPDEEITQSDPEAIRDLLERQVDLIIHGGY--LGAEPTTVIDLTDDSPV 192

Query: 191 ILRPG 195
           I+R G
Sbjct: 193 IIREG 197


>gi|322614979|gb|EFY11904.1| hypothetical protein SEEM315_01811 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621427|gb|EFY18281.1| hypothetical protein SEEM971_11630 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623231|gb|EFY20073.1| hypothetical protein SEEM973_05841 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628521|gb|EFY25309.1| hypothetical protein SEEM974_16300 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633685|gb|EFY30425.1| hypothetical protein SEEM201_01494 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638507|gb|EFY35202.1| hypothetical protein SEEM202_14835 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640823|gb|EFY37472.1| hypothetical protein SEEM954_09139 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645313|gb|EFY41841.1| hypothetical protein SEEM054_03164 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651804|gb|EFY48176.1| hypothetical protein SEEM675_03227 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654299|gb|EFY50621.1| hypothetical protein SEEM965_10369 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659264|gb|EFY55512.1| hypothetical protein SEEM19N_12191 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662734|gb|EFY58941.1| hypothetical protein SEEM801_18172 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667655|gb|EFY63815.1| hypothetical protein SEEM507_07019 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671931|gb|EFY68052.1| hypothetical protein SEEM877_04046 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677023|gb|EFY73087.1| hypothetical protein SEEM867_17434 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680315|gb|EFY76354.1| hypothetical protein SEEM180_05885 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685256|gb|EFY81252.1| hypothetical protein SEEM600_09039 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195434|gb|EFZ80613.1| hypothetical protein SEEM581_00405 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199315|gb|EFZ84409.1| hypothetical protein SEEM501_04659 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204773|gb|EFZ89769.1| hypothetical protein SEEM460_05081 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205931|gb|EFZ90894.1| hypothetical protein SEEM020_06034 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209959|gb|EFZ94868.1| hypothetical protein SEEM6152_14301 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217256|gb|EGA01977.1| hypothetical protein SEEM0077_19770 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220711|gb|EGA05156.1| hypothetical protein SEEM0047_22885 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227965|gb|EGA12117.1| hypothetical protein SEEM0055_13137 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232120|gb|EGA16227.1| hypothetical protein SEEM0052_17269 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234647|gb|EGA18734.1| hypothetical protein SEEM3312_15960 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238099|gb|EGA22158.1| hypothetical protein SEEM5258_03733 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243297|gb|EGA27316.1| hypothetical protein SEEM1156_03139 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248446|gb|EGA32381.1| hypothetical protein SEEM9199_22439 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252552|gb|EGA36395.1| hypothetical protein SEEM8282_02206 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255423|gb|EGA39189.1| hypothetical protein SEEM8283_12880 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260825|gb|EGA44427.1| hypothetical protein SEEM8284_12339 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267588|gb|EGA51071.1| hypothetical protein SEEM8285_08414 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270946|gb|EGA54382.1| hypothetical protein SEEM8287_13334 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 206

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVDIVLKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L++
Sbjct: 77  TYSYVDNVAFRLMKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
           T G P+   S    G     +    +   + K++ LII GG   +G + +T++++  +  
Sbjct: 135 TLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSP 192

Query: 189 VRILRPG 195
           V +LR G
Sbjct: 193 V-VLREG 198


>gi|257482786|ref|ZP_05636827.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 30  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 90  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 146 LEQLGEPL 153


>gi|262341230|ref|YP_003284085.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272567|gb|ACY40475.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 11/140 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K+ + L  G  +  PT+TV+GL  D+ N  AI ++ +IK R     +I  V   SM +
Sbjct: 7   IEKSVDILKKGKSLLYPTDTVWGLGCDAFNVEAINKICKIKNRSFSKSMILLVE--SMDR 64

Query: 72  KHASVDPLSLHLAKLFWPG------PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            H  V  ++    ++          P+T+V D ++    + LS  N  T   R+    F 
Sbjct: 65  LHQLVGKITDFTRQIIVDNIAKKNKPITIVYDHVNQIASNLLSEDN--TLAIRLTYDPFC 122

Query: 125 KKLIETYGHPLAIPSANRSG 144
             LI+    P+   SAN SG
Sbjct: 123 VCLIQNLDRPIISTSANLSG 142


>gi|15676348|ref|NP_273484.1| hypothetical protein NMB0436 [Neisseria meningitidis MC58]
 gi|7225661|gb|AAF40874.1| conserved hypothetical protein [Neisseria meningitidis MC58]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 24  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 83

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A VD +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 84  TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 131


>gi|332969027|gb|EGK08067.1| Sua5/YciO/YrdC/YwlC family protein [Kingella kingae ATCC 23330]
          Length = 206

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++ACE +  G    +PT++ Y L     + TA+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQACEIVRQGGVAVLPTDSCYALVCQLGDKTAMERILSIRKIDLKHHLTLLCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD       K+  PG  T +L     +    +HP      KT   RVP       L
Sbjct: 77  TYAKVDNSQFRQLKMTTPGAYTFILPASKEVPNRTLHP----KRKTIGLRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           +   G PL   +          +  + +   +   + L+IDGG    G E T V
Sbjct: 133 LRELGEPLLSCTLMLPEDDEPLSDPYEIRERLEHSVDLVIDGGWC--GTEPTTV 184


>gi|331092924|ref|ZP_04587538.2| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021931|gb|EGI01988.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|289624034|ref|ZP_06456988.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650385|ref|ZP_06481728.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 30  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 90  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 145

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 146 LEQLGEPL 153


>gi|113954257|ref|YP_729767.1| YrdC domain-containing protein [Synechococcus sp. CC9311]
 gi|113881608|gb|ABI46566.1| yrdC domain, putative [Synechococcus sp. CC9311]
          Length = 205

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 61/140 (43%), Gaps = 29/140 (20%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI----------CHVSDIS 68
           L AG    +PT+T+  LA     P    +++ +KKRP   PLI          CHVS ++
Sbjct: 18  LRAGGAALLPTDTLPALA---SMPEQAAQIWRLKKRPQDKPLILMGADVDALLCHVSPVA 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-CGFTK 125
                A        LA+  WPG LTLVL         ++P       T   R+P C    
Sbjct: 75  RADASA--------LAQRHWPGALTLVLPAFGPCAETLNP----GCATLGLRIPACKPML 122

Query: 126 KLIETYGHPLAIPSANRSGQ 145
            L+   G PLA  SAN SG+
Sbjct: 123 DLLRCSG-PLATTSANLSGE 141


>gi|260789488|ref|XP_002589778.1| hypothetical protein BRAFLDRAFT_90451 [Branchiostoma floridae]
 gi|229274961|gb|EEN45789.1| hypothetical protein BRAFLDRAFT_90451 [Branchiostoma floridae]
          Length = 160

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           L  A + L AG  IA+PT+T+YGLA  +++  A+ ++Y IK R +  P+   V+++S
Sbjct: 100 LSMAAKSLQAGNIIAVPTDTIYGLAGLAQSTEAVEQIYAIKGRNSSKPVAISVAEVS 156


>gi|10440179|dbj|BAB15668.1| unnamed protein product [Homo sapiens]
          Length = 127

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 13/87 (14%)

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG- 175
           R+P   F + L + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG  +IG 
Sbjct: 21  RIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEF--QDLWPQLSLVIDGG--QIGD 76

Query: 176 -------LESTIVNVQCEKKVRILRPG 195
                  L ST+V++    K  I+RPG
Sbjct: 77  GQSPECRLGSTVVDLSVPGKFGIIRPG 103


>gi|90416537|ref|ZP_01224468.1| hypothetical protein GB2207_05027 [marine gamma proteobacterium
           HTCC2207]
 gi|90331736|gb|EAS46964.1| hypothetical protein GB2207_05027 [marine gamma proteobacterium
           HTCC2207]
          Length = 204

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 10/172 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA   +  G  I  PT++VY +     +  A+ R+  I++    +       D+S +  +
Sbjct: 19  KAAAIVRKGGVIVYPTDSVYAIGCHIGDKQAMDRIRSIRQLDKNHNFTLMCRDLSELASY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFTKKLIE 129
           A VD  +    K   PGP T +L   S      +HP      KT   RVP     + L++
Sbjct: 79  ARVDNSAFRSLKAQTPGPFTFILPATSEVPRRLMHP----KRKTIGLRVPDSPIAQALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G P+   +    G     +  + + +++   + ++IDGG    GLE T V
Sbjct: 135 ELGEPMMSVTLILPGDEYPLSDPYDIRAALEAHVDVLIDGG--HCGLEPTTV 184


>gi|330960478|gb|EGH60738.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLVLHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|316984949|gb|EFV63905.1| yrdC domain protein [Neisseria meningitidis H44/76]
 gi|325134902|gb|EGC57535.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M13399]
 gi|325140950|gb|EGC63457.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis CU385]
 gi|325144974|gb|EGC67257.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           M01-240013]
 gi|325199623|gb|ADY95078.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis H44/76]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A VD +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|197285200|ref|YP_002151072.1| dsRNA-binding protein [Proteus mirabilis HI4320]
 gi|227355625|ref|ZP_03840019.1| RNA binding protein [Proteus mirabilis ATCC 29906]
 gi|194682687|emb|CAR42839.1| putative dsRNA-binding protein [Proteus mirabilis HI4320]
 gi|227164232|gb|EEI49125.1| RNA binding protein [Proteus mirabilis ATCC 29906]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y +     N  A+ R+  I++    +       D+S + 
Sbjct: 17  IEQSADVLRKGGVVIYPTDSGYAIGCCLDNKDAMTRICRIRQLDKHHNFTLMCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD +   L K   PG  T +L   +T D+   L     KT   RVP       L+E
Sbjct: 77  TYAYVDNVVFRLIKNNTPGNYTFILK--ATKDVPKRLMNDKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    ++  + K++ L+I GG   +G + T V    E   
Sbjct: 135 NIGEPLMSTSLILPGNDFAESDPEEINDLLGKQVDLVIHGGY--LGQKPTTVIDLTEDSP 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 VIVREG 198


>gi|28869017|ref|NP_791636.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852257|gb|AAO55331.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|330876948|gb|EGH11097.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966749|gb|EGH67009.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 209

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 17  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 77  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLILHP----KRRTIGLRVPSHPIAQAL 132

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 133 LEQLGEPL 140


>gi|75908905|ref|YP_323201.1| translation factor SUA5 [Anabaena variabilis ATCC 29413]
 gi|75702630|gb|ABA22306.1| translation factor SUA5 [Anabaena variabilis ATCC 29413]
          Length = 219

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 20/199 (10%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V  +A V  
Sbjct: 24  LSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135
            +  + K   PG  T    LL  T + P  + +   KT   RVP       L+E  G+P+
Sbjct: 84  TAYRIMKRLIPGTYTF---LLPATKLVPKLVQSPKRKTTGIRVPNHTVCLALLEALGNPI 140

Query: 136 AIPSAN------RSGQI-----SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              SA+       +G++     SIT++  +    + K + +I+D G       STIV++ 
Sbjct: 141 ISTSAHIPPDEAGNGKVGIVSESITSMAELF-DRVDKLVDVIVDTGQEPTYDVSTIVDLT 199

Query: 185 CEKKVRILRPGGLEIETLK 203
            ++   ++   GL  E +K
Sbjct: 200 GDEP--MITRQGLGWEAVK 216


>gi|56708352|ref|YP_170248.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670822|ref|YP_667379.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457478|ref|ZP_03665951.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370974|ref|ZP_04986977.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875175|ref|ZP_05247885.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604844|emb|CAG45926.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321155|emb|CAL09309.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569215|gb|EDN34869.1| hypothetical protein FTBG_01595 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841174|gb|EET19610.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159967|gb|ADA79358.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 204

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D+S + 
Sbjct: 17  LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++A VD  +  L K + PGP T +L+  +T  +   L T +  T   RV   +  + I  
Sbjct: 77  EYAKVDNNAYRLLKRYTPGPYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134

Query: 131 -YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             G PL I S    G Q  +T+   +  S I   +  +++      G + T V    E  
Sbjct: 135 EIGEPLVISSFIVPGHQYVVTDCDEV-DSQIMNYLDAVVES--DYCGYDPTTVVELLELP 191

Query: 189 VRILRPGGLEIE 200
            +ILR G  EI+
Sbjct: 192 YQILRQGAGEID 203


>gi|254672732|emb|CBA06707.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A VD +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|73540803|ref|YP_295323.1| Sua5/YciO/YrdC/YwlC [Ralstonia eutropha JMP134]
 gi|72118216|gb|AAZ60479.1| Sua5/YciO/YrdC/YwlC [Ralstonia eutropha JMP134]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  IA+PT++ Y L     +  A+ RL  ++     + L    SD+S + 
Sbjct: 17  IKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGIDDKHHLTLMCSDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
             A VD       K   PGP   +L+  +T ++   LS  + KT   RVP       L+ 
Sbjct: 77  SFARVDNRQYRWIKGATPGPYVFILE--ATKEVPRRLSHPSRKTIGVRVPEHAIPLALLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             G PL   +    G     N    + + + K + L+I GG
Sbjct: 135 DAGEPLLTATLQLPGDEEPMNDPAEIRARLEKLLDLVICGG 175


>gi|308388638|gb|ADO30958.1| hypothetical protein NMBB_0480 [Neisseria meningitidis alpha710]
 gi|325130804|gb|EGC53538.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           OX99.30304]
 gi|325137003|gb|EGC59600.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M0579]
 gi|325202753|gb|ADY98207.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           M01-240149]
 gi|325208749|gb|ADZ04201.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           NZ-05/33]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A VD +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|325205504|gb|ADZ00957.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           M04-240196]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A VD +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKVDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|237731719|ref|ZP_04562200.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907258|gb|EEH93176.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S + 
Sbjct: 17  INQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L+E
Sbjct: 77  TYSFVDNVAFRLIKNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   + K + LII GG   +G + T V    +   
Sbjct: 135 ALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKLVDLIIHGGY--LGQQPTTVIDLTDDSP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLREG 198


>gi|254448704|ref|ZP_05062162.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium HTCC5015]
 gi|198261712|gb|EDY85999.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium HTCC5015]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 13/176 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E +  G  +  PT++ Y +     +  A+ R+  I++    +       D+S + 
Sbjct: 17  VQQVAEIIRGGGIVVYPTDSSYAIGCHLDDKRALERIQRIRQVDKHHNFTLMCRDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A V   +  L K   PGP T +    S      L+    KT   RVP C  T  ++E 
Sbjct: 77  NYAKVGNQAFRLLKSHTPGPYTFIFSATSQVP-RRLAHPKKKTIGLRVPDCNITLAILEA 135

Query: 131 YGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            G P     L +P+      + +  ++  L ++    +  II+GG  +I  E T V
Sbjct: 136 LGEPMLSTTLILPNVEWPELVDVNFLRDQLENA----VDAIIEGG--QIPAEPTTV 185


>gi|47459206|ref|YP_016068.1| putative translation factor [Mycoplasma mobile 163K]
 gi|47458535|gb|AAT27857.1| putative translation factor [Mycoplasma mobile 163K]
          Length = 162

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 29/169 (17%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           ++  T T  G+++   NP     LYE+K RP    +   V  I   +K    +  +   A
Sbjct: 20  VSTDTVTGIGISIHHENPNL---LYELKNRPKNKKIAIVVGSIEQARKMPFWNEKAEAFA 76

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
            + WPG +TL+++                    R+P C   +  I   G P  + SAN+S
Sbjct: 77  NILWPGAVTLIVN----------------DQAIRMPNCKKLQDFIIDEG-PFFLTSANKS 119

Query: 144 GQ--ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           G+  I I N + I       +I     G     G  S I++++ +K++R
Sbjct: 120 GEDPIEINNAQKIFPE--VTKIYNFCKGN----GKSSIIIDIETKKRLR 162


>gi|77360238|ref|YP_339813.1| RNA binding protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875149|emb|CAI86370.1| putative RNA binding protein with YrdC/RibB domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 10/191 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +++A + +  G  +  PT++ Y +  +  N  A  R+  I+     +       D+S
Sbjct: 14  SRLIQQAADIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKHHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS----TANLKTACFRVPCGFT 124
            +  +A VD  +  L K   PGP T +           L+    T  ++     + C   
Sbjct: 74  ELSTYARVDNQTFRLIKNNTPGPYTFIFKGTKEVPKRLLNDKKKTIGIRVIAHPIACA-- 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L+E  G PL   S    G+    +    +   + K + LII GG   +  ++T V   
Sbjct: 132 --LLEELGEPLMSCSLILPGEEYTESDPDEIIERLDKHVDLIIHGGY--LAEQATTVVDL 187

Query: 185 CEKKVRILRPG 195
            E +V+ILR G
Sbjct: 188 SEDEVQILRVG 198


>gi|213968655|ref|ZP_03396797.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato T1]
 gi|301384615|ref|ZP_07233033.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato Max13]
 gi|302062060|ref|ZP_07253601.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato K40]
 gi|302130738|ref|ZP_07256728.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926588|gb|EEB60141.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato T1]
 gi|331017429|gb|EGH97485.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 222

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 30  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
             A VD  +    K   PGP T +L+         +HP      +T   RVP     + L
Sbjct: 90  LFAKVDTGAFRALKAHTPGPYTFILNATREVPRLILHP----KRRTIGLRVPSHPIAQAL 145

Query: 128 IETYGHPL 135
           +E  G PL
Sbjct: 146 LEQLGEPL 153


>gi|284929281|ref|YP_003421803.1| putative translation factor [cyanobacterium UCYN-A]
 gi|284809725|gb|ADB95422.1| putative translation factor (SUA5) [cyanobacterium UCYN-A]
          Length = 134

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 14 KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
          K  + L  G  ++ PT+T+  LA   +N ++I   + +KKR    PLI   S    V K+
Sbjct: 8  KLVQGLFEGKVVSFPTDTIPALATLPQNASSI---FALKKRSFQKPLILMCSSSENVWKY 64

Query: 74 ASVDPLSL----HLAKLFWPGPLTLVL 96
             +   L    ++A  +WPGPLTLVL
Sbjct: 65 TQGNSEELRNWKNIAYRYWPGPLTLVL 91


>gi|119476916|ref|ZP_01617197.1| putative translation factor (SUA5) [marine gamma proteobacterium
           HTCC2143]
 gi|119449723|gb|EAW30960.1| putative translation factor (SUA5) [marine gamma proteobacterium
           HTCC2143]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 10/191 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A + L  G  I  PT++ Y +     N  A+  +  ++K  + +       D+S
Sbjct: 14  SRLINQAVDILKGGGVIVYPTDSGYAIGCQLGNKKALDTIRRVRKLDSSHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVP-CGFT 124
            +  +A VD  +  L K   PGP T +L   S      +HP      +T   RVP     
Sbjct: 74  ELGSYAKVDNTAYRLLKNHTPGPYTFILKATSEVPKRLMHP----KRRTIGLRVPENNIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +L+     P+   +    G        + +  ++  E+ L+IDGG    G+E T V   
Sbjct: 130 LQLLAGLNEPMMSVTMILPGDDLPMTDPYDIRQTLEHELDLVIDGGYC--GMEPTSVIDL 187

Query: 185 CEKKVRILRPG 195
            +    I+R G
Sbjct: 188 VDDMPVIIRRG 198


>gi|34497149|ref|NP_901364.1| hypothetical protein CV_1694 [Chromobacterium violaceum ATCC 12472]
 gi|34103006|gb|AAQ59369.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68
           +R+A + L  G  IA PT++ Y L     +  A+ R+ EI+    +  +  L+CH  D+S
Sbjct: 17  IREAVKILREGGVIAYPTDSCYALGCALGDKEAMERILEIRGVDLKQRLMTLVCH--DLS 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC--FRVP-CGFTK 125
            +  +A VD     L K   PG  T +L   +T ++ P  T + K A    RVP      
Sbjct: 75  ELANYAKVDNRQYRLLKSTTPGSYTFILQ--ATREV-PRRTLHPKRATIGLRVPDHKVAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+E  G P+   +    G     +  + +   +   +  ++DGG    G E T V V  
Sbjct: 132 ALLEELGEPILSCTLMLPGDDVPMSDPYEIRERLEHLVDAVLDGGWC--GTEPTTV-VDM 188

Query: 186 EKKVRILRPG 195
              V ++R G
Sbjct: 189 TDGVELVREG 198


>gi|88802782|ref|ZP_01118309.1| putative Sua5/yciO/yrdC family protein [Polaribacter irgensii 23-P]
 gi|88781640|gb|EAR12818.1| putative Sua5/yciO/yrdC family protein [Polaribacter irgensii 23-P]
          Length = 205

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 12/194 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68
           + K  + L AG  +  PT+TVYGL  D     A+ ++ ++K      A    IC+  D+S
Sbjct: 17  ITKIVKVLQAGGLVIYPTDTVYGLGCDITKVKALEKIAQLKGVKLDKANFSFICN--DLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +  +   +D  +  + K   PGP T +L    +T++ P      KT   R+P     + 
Sbjct: 75  HLSDYVKQIDSTTFKILKRALPGPYTFILP--GSTNL-PKVFKKKKTVGIRIPDNNIIRM 131

Query: 127 LIETYGHPLAIPSA-NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L+   G+P+   S  +    +  T    ++       + ++IDGG       ST++++  
Sbjct: 132 LVAELGNPIVSTSIRDEDDVLEYTTDPELIFEKWQNSVDVVIDGGYGD-NEPSTVIDLTE 190

Query: 186 EKKVRILRPGGLEI 199
             KV     G L+I
Sbjct: 191 APKVIREGKGSLDI 204


>gi|313667824|ref|YP_004048108.1| hypothetical protein NLA_4790 [Neisseria lactamica ST-640]
 gi|313005286|emb|CBN86719.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 234

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+  E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 45  IRQVVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 104

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A++D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 105 TYAAIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 152


>gi|212277729|sp|B3PGZ1|RIMN_CELJU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 189

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  +  +  A+  L  +K+RP    +I   +++  ++   
Sbjct: 13  AANMMRQGGVIAYPTEAVWGLGCNPFDEDAVADLLALKQRPVEKGVILIAANLQQIEPFI 72

Query: 75  S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIETY 131
             +D L     K  WPGP+T    L+    + P   T    +   RV        L   +
Sbjct: 73  DHLDDLQRQRLKNTWPGPVTW---LVPNNGLAPHWITGAFPSVALRVTDHPVAAGLCRAF 129

Query: 132 GHPLAIPSANRSGQISITNVKHI 154
           G P+   S N +G+    N+  +
Sbjct: 130 GGPVVSTSCNPAGKPPARNIHEV 152


>gi|220905671|ref|YP_002480982.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862282|gb|ACL42621.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7425]
          Length = 200

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----ISMVKKHASVDPLS 80
           I+ PT+TV  LA     P     ++  K+R    PLI   +        V+   +   + 
Sbjct: 20  ISFPTDTVPALAT---RPDRAELIFAAKQRQPDKPLILMAATPEALWPYVQGSTAEWQIW 76

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
             +A+ +WPG LTLV   L  +D  P  ++    KT   R+P  G    +++  G PLA 
Sbjct: 77  QSVAERYWPGALTLV---LPASDRLPAVMNPIEGKTIGVRIPNWGLALTILQQTG-PLAT 132

Query: 138 PSANRSGQISITNVKHI 154
            S NRSGQ  +T +  I
Sbjct: 133 TSVNRSGQPPLTALNEI 149


>gi|227326053|ref|ZP_03830077.1| hypothetical protein PcarcW_01496 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S + 
Sbjct: 17  INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP      +L+ 
Sbjct: 77  TYAHVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIALELLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   +    G     +    +   + K++ L+I GG   +G + T V    E   
Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQERLGKQVDLVIHGG--SLGQQPTTVIDLTESVP 192

Query: 190 RILRPG 195
           R+ R G
Sbjct: 193 RVAREG 198


>gi|123442466|ref|YP_001006445.1| hypothetical protein YE2207 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089427|emb|CAL12275.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 206

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S + 
Sbjct: 17  INQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L++
Sbjct: 77  TYAYVDNPAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKEYLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|221103449|ref|XP_002169716.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 143

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 13/114 (11%)

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147
           PGP+TLV    S  + +   T+N  +   R+P C F + L +    P+A+ SAN S  +S
Sbjct: 16  PGPVTLVFQRSSLLNSYLNPTSN--SIGVRIPKCAFIQTLAQKCQQPIALTSANISSAMS 73

Query: 148 ITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPG 195
             ++       +  ++ LI+DGG       S++G  ST+V++  +++  I+R G
Sbjct: 74  SLDINEF--EELWPKLDLIVDGGTLGSSEQSRLG--STVVDLTKKREFTIIREG 123


>gi|89891475|ref|ZP_01202980.1| translation factor, Sua5/YciO/YrdC/YwlC family [Flavobacteria
           bacterium BBFL7]
 gi|89516249|gb|EAS18911.1| translation factor, Sua5/YciO/YrdC/YwlC family [Flavobacteria
           bacterium BBFL7]
          Length = 205

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 17/209 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI---KKR 54
           Q++ I + N     L++  + +  G  +  PT+TVYGL  D  +  A+ ++ +I   K  
Sbjct: 3   QLVRIYEDNPSPKELQRIAKAMRDGALVIYPTDTVYGLGCDINHKGALEKVAKIRGVKLE 62

Query: 55  PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
            A    IC    +S + ++ S +D  +  L K   PGP T +   L   +  P      K
Sbjct: 63  KANFSFICE--SLSNLSEYVSQIDTATFKLLKRNLPGPYTFI---LPGNNNLPSVFKKKK 117

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGI 171
           T   RVP       L++  G+P+   S     + I  T    ++       +  +IDGG 
Sbjct: 118 TVGIRVPDNSIAIGLVQALGNPIISTSIKDEDEVIEYTTDPSLIVEKWDNLVDYVIDGGY 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIE 200
               + ST++++  ++ V ++R G   +E
Sbjct: 178 GD-NIASTVIDLTGDEPV-LVREGKGSVE 204


>gi|170078316|ref|YP_001734954.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002]
 gi|169885985|gb|ACA99698.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002]
          Length = 223

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 11/191 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    + L AG  +  PT+TVY +  D     A++++ ++K+     PL    S +S + 
Sbjct: 17  LEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLANDKPLTFLCSSLSNIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLI 128
           ++A V   +  + K   PGP T    LL  T   P  + +   ++   RVP     + L+
Sbjct: 77  EYALVSDEAYRIMKRAIPGPYTF---LLPATKQVPKLVMSPKRRSTGIRVPDHAICQGLL 133

Query: 129 ETYGHPLAIPSA---NRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +  G+P+   SA   +  G+  ++   K  L  ++   + +IID         STI++  
Sbjct: 134 QALGNPIISTSAHLPDEDGEPFTLGLEKARLFDALEPLVDIIIDSDSEPGTKTSTILDF- 192

Query: 185 CEKKVRILRPG 195
           C+++  ++R G
Sbjct: 193 CDRQPTLIRKG 203


>gi|118497072|ref|YP_898122.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           novicida U112]
 gi|134301787|ref|YP_001121755.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931331|ref|YP_001891315.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194324308|ref|ZP_03058082.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118422978|gb|ABK89368.1| Sua5/YciO/YrdC family protein [Francisella novicida U112]
 gi|134049564|gb|ABO46635.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187712240|gb|ACD30537.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194321755|gb|EDX19239.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 204

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 6/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D+S + 
Sbjct: 17  LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++A VD  +  L K + PGP T +L+  +T  +   L T +  T   RV   +  + I  
Sbjct: 77  EYAKVDNNAYRLLKRYTPGPYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134

Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL I S    G   +      + S I   +  +++      G + T V    E   
Sbjct: 135 EIGEPLVISSFIVPGHQHVVTDCDEVDSQIMNYLDAVVES--DYCGYDPTTVVELLELPY 192

Query: 190 RILRPGGLEIE 200
           +ILR G  EI+
Sbjct: 193 QILRQGAGEID 203


>gi|254468103|ref|ZP_05081509.1| putative yrdC domain protein [beta proteobacterium KB13]
 gi|207086913|gb|EDZ64196.1| putative yrdC domain protein [beta proteobacterium KB13]
          Length = 179

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 17/170 (10%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HLAKL 86
           PTE+ +GL    +N  A++++  IKKR      +     +    ++ S+   +L H++  
Sbjct: 19  PTESCFGLGCHPKNINALKKILIIKKRSKNKSFLLISDKVQKFFRYVSLSEKNLQHISD- 77

Query: 87  FWPGPLTLVL--DLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
            WP   + +   +L S   + P      K  C R+P     K+ +E    P+   SAN S
Sbjct: 78  -WPKHTSYLFKKNLRSPMLLSP---KKEKIGC-RIPDHKKIKRTLENLNFPITSTSANFS 132

Query: 144 GQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           GQIS+   +H     SS  C    +I++  +      STI++ + +K +R
Sbjct: 133 GQISLKFWRHCCRKFSSKSC----IIMNERVGNYKRPSTIIDFETKKIIR 178


>gi|260773018|ref|ZP_05881934.1| YrdC family protein [Vibrio metschnikovii CIP 69.14]
 gi|260612157|gb|EEX37360.1| YrdC family protein [Vibrio metschnikovii CIP 69.14]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L     KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNVKRKTIGIRVPDNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G+ +  +    +   +   + +I++GG   +G + T V    E ++
Sbjct: 135 ALGEPLMSTSLILPGKETTESDPEEIRDRLEHLVDVILNGGY--LGEQPTTVIDFSEDEM 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARLG 198


>gi|312958123|ref|ZP_07772646.1| SUA5/YciO/YrdC-like probable translation factor [Pseudomonas
           fluorescens WH6]
 gi|311287554|gb|EFQ66112.1| SUA5/YciO/YrdC-like probable translation factor [Pseudomonas
           fluorescens WH6]
          Length = 185

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    +I          P  
Sbjct: 16  AGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNIRQFDFLFEDFPQD 75

Query: 81  L--HLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKTA---CFRVPCGFTKKLIET 130
               +A   WPGP T ++   DLL    T +H   T  L+       R  C     LI T
Sbjct: 76  WIDRMAST-WPGPNTWLVPHQDLLPEWVTGVH--DTVALRVTDHPLVRDLCSLVGPLIST 132

Query: 131 YGHPLAIPSA 140
             +P   P+A
Sbjct: 133 SANPQGRPAA 142


>gi|240948953|ref|ZP_04753309.1| hypothetical protein AM305_08629 [Actinobacillus minor NM305]
 gi|240296768|gb|EER47379.1| hypothetical protein AM305_08629 [Actinobacillus minor NM305]
          Length = 205

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 5/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +     I  PT++ Y L     N +A+ R+ +I+K P  +      SD+S + 
Sbjct: 17  INQAVEIIKNDGVIIYPTDSGYALGCAIGNKSAMERIVKIRKLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V   +  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  NYAMVSNQAYRLIKNNVPNPYTFILP--ATKDVPRRLLTKRKTIGIRVPQNEIALALISA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   S     +    +    +   + +++ LII GG   +G E T V    +    
Sbjct: 135 LGEPILSCSLMLPDEEITQSDPEAIRDLLERQVDLIIHGGY--LGAEPTTVIDLTDDSPV 192

Query: 191 ILRPG 195
           I+R G
Sbjct: 193 IIREG 197


>gi|70733538|ref|YP_257177.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5]
 gi|123658961|sp|Q4KKQ6|RIMN_PSEF5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|68347837|gb|AAY95443.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5]
          Length = 185

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    
Sbjct: 1   MVSSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKSRSVDKGLILIAD 60

Query: 66  DISMVK------KHASVDPLSLHLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKT 114
           +I              +D +S       WPGP T ++   +LL    T +H   T  L+ 
Sbjct: 61  NIHQFDFLFEDFPDTWIDRMSST-----WPGPNTWLVPHQNLLPEWVTGVH--DTVALRV 113

Query: 115 A---CFRVPCGFTKKLIETYGHPLAIPSA 140
           +     R  C     LI T  +P   P+A
Sbjct: 114 SDHPLVRELCSLVGPLISTSANPQGRPAA 142


>gi|323492457|ref|ZP_08097605.1| hypothetical protein VIBR0546_15511 [Vibrio brasiliensis LMG 20546]
 gi|323313244|gb|EGA66360.1| hypothetical protein VIBR0546_15511 [Vibrio brasiliensis LMG 20546]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +   +   +  I++GG   +G + T V    E + 
Sbjct: 135 ALGEPLMSTSLILPGSDVTESDPEDIRDKLEHAVDCILNGGY--LGEQPTTVVDFSEDEP 192

Query: 190 RILRPG 195
            I R G
Sbjct: 193 VIARVG 198


>gi|284799516|ref|ZP_05984195.2| protein RimN [Neisseria subflava NJ9703]
 gi|284798106|gb|EFC53453.1| protein RimN [Neisseria subflava NJ9703]
          Length = 191

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 13/196 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  + A R+    L  G  +A PTE+ YGL      P A+ +L  +KKRP    +
Sbjct: 3   MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCVPTLPKALNQLIHLKKRPQHKGM 62

Query: 61  ICHVSDIS----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTA 115
           I     +     ++++ +      LH A   WP P T +L   +   + P L        
Sbjct: 63  IVIGHSLEQLQPLLQRPSENIQTMLHEA---WPAPKTFLLP--AGKKVLPSLRGKRRSKL 117

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             RVP     ++L +    PL   S NR+G+ +    + +      +++  ++ G I K 
Sbjct: 118 AVRVPAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREV-RRQFGRKV-WVVGGLIGKQ 175

Query: 175 GLESTIVNVQCEKKVR 190
              S I++ +   ++R
Sbjct: 176 KTPSQIIDGETGARLR 191


>gi|161870640|ref|YP_001599813.1| hypothetical protein NMCC_1710 [Neisseria meningitidis 053442]
 gi|161596193|gb|ABX73853.1| putative translation factor [Neisseria meningitidis 053442]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|163803031|ref|ZP_02196917.1| putative translation factor [Vibrio sp. AND4]
 gi|159173205|gb|EDP58034.1| putative translation factor [Vibrio sp. AND4]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYARVDNSAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   +   + +I++GG   +G + T V    E + 
Sbjct: 135 ALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTVIDFSEGEA 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARVG 198


>gi|332290311|ref|YP_004421163.1| conserved hypothetical protein, yrdC domain protein [Gallibacterium
           anatis UMN179]
 gi|330433207|gb|AEC18266.1| conserved hypothetical protein, yrdC domain protein [Gallibacterium
           anatis UMN179]
          Length = 207

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 17/197 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVDILRDGGVIVYPTDSGYALGCMLGDKHAMDRIIRIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            ++ V      L K   PG  T +L   +T ++   L T+  KT   RVP       L++
Sbjct: 77  NYSLVTNTIYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNNIALALLK 134

Query: 130 TYGHPLAIPSANRSGQISIT-----NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
           T G P+   S    G+   T      ++++L +    ++ LII GG   +G + +T+V++
Sbjct: 135 TLGEPILSCSLMLPGEEYFTLSDPEEIRNLLEN----QVDLIIHGGY--LGQDPTTVVDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
             E  V ILR G   IE
Sbjct: 189 TVEPPV-ILREGSGSIE 204


>gi|17227697|ref|NP_484245.1| hypothetical protein alr0201 [Nostoc sp. PCC 7120]
 gi|17135179|dbj|BAB77725.1| alr0201 [Nostoc sp. PCC 7120]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V  +A V  
Sbjct: 24  LSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPC-GFTKKLIETYGHPL 135
            +  + K   PG  T    LL  T + P  + +   KT   RVP       L+E  G+P+
Sbjct: 84  TAYRIMKRLIPGTYTF---LLPATKLVPRLVQSPKRKTTGIRVPNHTVCLALLEALGNPI 140

Query: 136 AIPSAN------RSGQI-----SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              SA+       +G++     SIT++  +    + K + +I+D G       STIV++ 
Sbjct: 141 ISTSAHIPPDEAGNGKVGIISESITSMVELF-DRVDKLVDVIVDTGQEPTYDVSTIVDLT 199

Query: 185 CEKKVRILRPG-GLEIET 201
            ++ + I R G G E  T
Sbjct: 200 GDEPM-ITRQGLGWEAVT 216


>gi|325203543|gb|ADY98996.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           M01-240355]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|325128851|gb|EGC51710.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis N1568]
 gi|325142951|gb|EGC65309.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           961-5945]
          Length = 206

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|238763131|ref|ZP_04624097.1| hypothetical protein ykris0001_40700 [Yersinia kristensenii ATCC
           33638]
 gi|238698630|gb|EEP91381.1| hypothetical protein ykris0001_40700 [Yersinia kristensenii ATCC
           33638]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y L     +  A+ R+  I++    +       D+S + 
Sbjct: 17  INQSVDVLRKGGVVVYPTDSGYALGCRLEDKAAMERICRIRQLDGNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L++
Sbjct: 77  TYAYVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +  ++ K++ LII GG   +G + T V    +   
Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|221135276|ref|ZP_03561579.1| Sua5/YciO/YrdC family protein [Glaciecola sp. HTCC2999]
          Length = 188

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 14/186 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +     + G  I  PTE V+GL  D     A+  +  IK RP    LI   +    + 
Sbjct: 9   LEQFISAFEQGEVIGYPTEAVFGLGCDPDIADAVNNVLAIKTRPQDKGLILIAATFEQLL 68

Query: 72  KH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
            +   + ++P  ++     WPGP T ++    TT  +   T    T   RV    T   L
Sbjct: 69  PYIDISELEPEIINKVHATWPGPYTWIMPKAKTTPDY--LTGGRNTIAVRVSAHPTVIAL 126

Query: 128 IETYGHPLAIPSANRSGQI---SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
                 PL   SAN SG+    ++  +K   + +I       IDG +      S I +  
Sbjct: 127 CNAVNKPLVSTSANPSGETPARTLEQIKTYFADTI-----FAIDGEVDHNAQPSKIQDAV 181

Query: 185 CEKKVR 190
             K +R
Sbjct: 182 TGKVLR 187


>gi|113460885|ref|YP_718952.1| translation factor SUA5 [Haemophilus somnus 129PT]
 gi|170717433|ref|YP_001784533.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus somnus 2336]
 gi|112822928|gb|ABI25017.1| translation factor SUA5 [Haemophilus somnus 129PT]
 gi|168825562|gb|ACA30933.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus somnus 2336]
          Length = 207

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 17/199 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S
Sbjct: 14  SRLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVKIRQLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTK 125
            +  ++ V+     L K   PG  T +   LS T   P  L T+  KT   RVP      
Sbjct: 74  ELSTYSVVNNSVYRLIKNNTPGRYTFI---LSATKELPRRLMTSKRKTIGIRVPDNQIAL 130

Query: 126 KLIETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            L+++ G P     L +P    + Q     ++  L      ++ LII GG   +  + T 
Sbjct: 131 DLLKSLGEPILSCSLMLPGEEYTTQSDPEEIRDRLE----HQVDLIIHGGY--LSQQPTT 184

Query: 181 VNVQCEKKVRILRPGGLEI 199
           V    E    ILR G  +I
Sbjct: 185 VVDLTEDNPVILREGSGDI 203


>gi|59801858|ref|YP_208570.1| hypothetical protein NGO1520 [Neisseria gonorrhoeae FA 1090]
 gi|194099331|ref|YP_002002431.1| hypothetical protein NGK_1806 [Neisseria gonorrhoeae NCCP11945]
 gi|254494302|ref|ZP_05107473.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268595399|ref|ZP_06129566.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599438|ref|ZP_06133605.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601955|ref|ZP_06136122.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604284|ref|ZP_06138451.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682743|ref|ZP_06149605.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684847|ref|ZP_06151709.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687170|ref|ZP_06154032.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043170|ref|ZP_06568893.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398503|ref|ZP_06642681.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria gonorrhoeae F62]
 gi|59718753|gb|AAW90158.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934621|gb|ACF30445.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226513342|gb|EEH62687.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548788|gb|EEZ44206.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583569|gb|EEZ48245.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586086|gb|EEZ50762.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588415|gb|EEZ53091.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268623027|gb|EEZ55427.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625131|gb|EEZ57531.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627454|gb|EEZ59854.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012776|gb|EFE04759.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610974|gb|EFF40071.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria gonorrhoeae F62]
 gi|317164837|gb|ADV08378.1| hypothetical protein NGTW08_1416 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 234

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 45  IKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 104

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----IHPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D     +HP      KT   R+P
Sbjct: 105 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDAPARALHP----KRKTIGLRIP 152


>gi|332290736|ref|YP_004429345.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332168822|gb|AEE18077.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 205

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 13/190 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVSDIS 68
           L++  + L  G  I  P++TVY L  D  N  A+ R+ +IK      A    +C   D+S
Sbjct: 17  LQEIVKILKNGGLIIYPSDTVYALGCDITNTKALERVAQIKGVKLAKANFSFVCE--DLS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +  +   +D  +  + K   PGP T +   L   +  P      K    RVP    T+ 
Sbjct: 75  NLSDYVKQIDTQTFKILKRALPGPYTFI---LPGNNNLPSVFKKKKEVGIRVPDNEITRA 131

Query: 127 LIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   G+P+   S     + I  T    ++       + +I+DGG     + ST++++  
Sbjct: 132 IVRALGNPIISTSIYDEDEVIEYTTDPELIFEKWQNRVDVIVDGGYGG-NIPSTVIDLTG 190

Query: 186 EKKVRILRPG 195
           ++ + ++R G
Sbjct: 191 DEPI-LIREG 199


>gi|254805532|ref|YP_003083753.1| putative translation factor [Neisseria meningitidis alpha14]
 gi|254669074|emb|CBA07599.1| putative translation factor [Neisseria meningitidis alpha14]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|268597262|ref|ZP_06131429.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268551050|gb|EEZ46069.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 234

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 45  IKQAVEIINQGGVVVYPTDSCYALGCKLGDKVAMERILSIRKIDLKHHLTLMCADLSELG 104

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----IHPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D     +HP      KT   R+P
Sbjct: 105 TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDAPARALHP----KRKTIGLRIP 152


>gi|262199867|ref|YP_003271076.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365]
 gi|262083214|gb|ACY19183.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365]
          Length = 208

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 77/194 (39%), Gaps = 22/194 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L  G   A PT++ Y L        A  R+Y+ K     + +     DI+   
Sbjct: 17  IQQAVDILHRGGVAAYPTDSCYALGCAIEAKQAALRIYQAKSMSQNHRMALICPDIASAS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
           ++     L+  LAK  +PGP TLVL   +T ++  L      +TA  R+      + L+ 
Sbjct: 77  EYVHFSQLAYKLAKRIFPGPYTLVLP--ATREVPKLVIDKKQRTAGIRITSNPVAQALVN 134

Query: 130 TYGHPLAIPSA---NRSGQI-----SITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL   +A   +  G       +I    HIL   +  E P          G E T V
Sbjct: 135 ALGRPLLTSTAILPDEDGACIDADETIDAFGHILDVVVDSESP----------GDEPTTV 184

Query: 182 NVQCEKKVRILRPG 195
                  V +LR G
Sbjct: 185 VEVAGNDVNVLREG 198


>gi|37523508|ref|NP_926885.1| hypothetical protein gll3939 [Gloeobacter violaceus PCC 7421]
 gi|35214512|dbj|BAC91880.1| gll3939 [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 20/199 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L AG  +  PT+T Y +  D  +  AI R+  IK+     PL      +S V 
Sbjct: 17  LGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLSNDKPLTFLCPSLSNVA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKKLI 128
            +A V   +  L +   PGP T    LL  T   P    + K  T   RVP     + L+
Sbjct: 77  TYARVGDDAYRLMRHLLPGPYTF---LLPATRALPKLVLDPKRRTTGIRVPDHPLCQALL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-----SKIGL----EST 179
              G+PL I ++ RS   S    ++ L  ++      ++DG +     ++ GL     ST
Sbjct: 134 AGLGNPL-ISTSARSADGSEIRYEYELFEALAP----VVDGIVELDPPAQDGLLLTQVST 188

Query: 180 IVNVQCEKKVRILRPGGLE 198
           ++++  E+ V + R  G E
Sbjct: 189 VIDLSGEQPVVVRRGLGWE 207


>gi|192360293|ref|YP_001984039.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107]
 gi|190686458|gb|ACE84136.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107]
          Length = 233

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 10/145 (6%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  +  +  A+  L  +K+RP    +I   +++  ++   
Sbjct: 57  AANMMRQGGVIAYPTEAVWGLGCNPFDEDAVADLLALKQRPVEKGVILIAANLQQIEPFI 116

Query: 75  S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRV---PCGFTKKLIE 129
             +D L     K  WPGP+T    L+    + P   T    +   RV   P      L  
Sbjct: 117 DHLDDLQRQRLKNTWPGPVTW---LVPNNGLAPHWITGAFPSVALRVTDHPV--AAGLCR 171

Query: 130 TYGHPLAIPSANRSGQISITNVKHI 154
            +G P+   S N +G+    N+  +
Sbjct: 172 AFGGPVVSTSCNPAGKPPARNIHEV 196


>gi|240081150|ref|ZP_04725693.1| hypothetical protein NgonF_07548 [Neisseria gonorrhoeae FA19]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIINQGGVVVYPTDSCYALGCKLGDKVAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----IHPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D     +HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDAPARALHP----KRKTIGLRIP 124


>gi|197119503|ref|YP_002139930.1| hydrogenase maturation protein HypF [Geobacter bemidjiensis Bem]
 gi|197088863|gb|ACH40134.1| hydrogenase maturation protein HypF [Geobacter bemidjiensis Bem]
          Length = 758

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL+ A E L  G  +A+     Y LAVD+ N  A+ RL + K+R    P     +D+ 
Sbjct: 201 GDALKLALEALSQGKIVAVKGVGGYHLAVDAGNQAAVERLRQRKRRDE-KPFAMLAADLE 259

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           MV++HA    L   L  L    P+ L+  L  ++ I  L         F +P    + L+
Sbjct: 260 MVRRHAHCSELEGRLL-LGVERPIVLMRKLAGSS-ISDLVAPGNGWFGFMLPGNPLQHLL 317

Query: 129 -ETYGHPLAIPSANRSGQ 145
              +G PL + S N S +
Sbjct: 318 ARGHGAPLVMTSGNLSDE 335


>gi|208780526|ref|ZP_03247866.1| Sua5/YciO/YrdC/YwlC family protein [Francisella novicida FTG]
 gi|254372431|ref|ZP_04987921.1| hypothetical protein FTCG_01656 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570159|gb|EDN35813.1| hypothetical protein FTCG_01656 [Francisella novicida GA99-3549]
 gi|208743672|gb|EDZ89976.1| Sua5/YciO/YrdC/YwlC family protein [Francisella novicida FTG]
          Length = 204

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 6/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D+S + 
Sbjct: 17  LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++A VD  +  L K + PGP T +L+  +T  +   L T +  T   RV   +  + I  
Sbjct: 77  EYAKVDNNAYRLLKRYTPGPYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134

Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL I S    G   +      + S I   +  +++      G + T V    E   
Sbjct: 135 EIGEPLVISSFIVPGHQHVVTDCAEVDSQIMNYLDAVVES--DYCGYDPTTVVELLELPY 192

Query: 190 RILRPGGLEIE 200
           +ILR G  EI+
Sbjct: 193 QILRQGAGEID 203


>gi|87120381|ref|ZP_01076276.1| hypothetical protein MED121_09318 [Marinomonas sp. MED121]
 gi|86164484|gb|EAQ65754.1| hypothetical protein MED121_09318 [Marinomonas sp. MED121]
          Length = 185

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 17 EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
          + L  G  IA PTE V+GL  D +N TA+ +L EIK RP    +I    D
Sbjct: 12 DLLKRGGIIAYPTEAVWGLGCDPQNQTAVIKLLEIKSRPMNKGMILAAGD 61


>gi|218768797|ref|YP_002343309.1| hypothetical protein NMA2049 [Neisseria meningitidis Z2491]
 gi|121052805|emb|CAM09152.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|319411036|emb|CBY91436.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDVPARTLHP----KRKTIGLRIP 124


>gi|15806862|ref|NP_295585.1| SUA5-like protein [Deinococcus radiodurans R1]
 gi|6459642|gb|AAF11415.1|AE002026_3 SUA5-related protein [Deinococcus radiodurans R1]
          Length = 230

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 79/194 (40%), Gaps = 12/194 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR A + LD G  +A PTETV+GLA       A   LY  K R A  PL       +   
Sbjct: 23  LRAAADVLDRGGVVAYPTETVWGLAARP---AAAAELYRRKGREANKPLQLSCPGAAAAL 79

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
             A   P  L L+   WPGPLT+V     + L        + A       RVP       
Sbjct: 80  ALAVPSPALLALSAC-WPGPLTVVTPGRPERLEDWGAGAEAVAPDGWLGLRVPAHPVALA 138

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLESTIVNV-- 183
           L+   G PLA  S N SGQ + T      + ++    +P             ST++ +  
Sbjct: 139 LLSAAGGPLATTSLNPSGQAAATTQAEAEAYALADLTLPEPAGTADRPPAAPSTVLRLPA 198

Query: 184 QCEKKVRILRPGGL 197
           + E   R+LR GGL
Sbjct: 199 EGEDTARMLRLGGL 212


>gi|172039116|ref|YP_001805617.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142]
 gi|171700570|gb|ACB53551.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 26/189 (13%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL- 83
           I+ PT+TV  LA     P +   ++  K+RP   PLI   S    + K+    P    + 
Sbjct: 19  ISFPTDTVPALAA---LPESASLIFATKQRPPDKPLILMGSSSDAIWKYVKGTPQEFEIW 75

Query: 84  ---AKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCGFTKKLIETYGHPLAIP 138
               K +WPG LTLV   L  ++  P +   L+  T   R+P     + I      LA  
Sbjct: 76  EKVVKQYWPGQLTLV---LPASEWVPKAMNPLEPTTIGVRIPNSIIAQNILKQTGCLATT 132

Query: 139 SANRSGQISITNVKHILSSSICKEIP--LIIDGGISK------IGLESTIVNVQCEKKVR 190
           SAN SG+  I  +     S I    P  L+++  + K       GL ST+     +   +
Sbjct: 133 SANLSGEPPIETL-----SEIAANFPDVLVLNEEVLKNQKKYGSGLPSTVAK-WTDTDWK 186

Query: 191 ILRPGGLEI 199
           ILR G +++
Sbjct: 187 ILRQGSIKL 195


>gi|163788700|ref|ZP_02183145.1| translation factor [Flavobacteriales bacterium ALC-1]
 gi|159875937|gb|EDP69996.1| translation factor [Flavobacteriales bacterium ALC-1]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 15/199 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK--KRPAMN-PLICHVSDI 67
           A++     L  G  I  PT+TVYGL  D  N  A+ R+  IK  K    N   +C   D+
Sbjct: 16  AIQNVVNVLKRGGLIIYPTDTVYGLGCDITNIKALERIAIIKGVKLEKSNFSFVCE--DL 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S +  +   +D  +  + K   PG  T +   L  +   P      KT   RVP      
Sbjct: 74  SNLSDYVKQIDTRTFKILKRALPGAYTFI---LPGSKNLPNPFKKRKTVGIRVPDNSIAL 130

Query: 126 KLIETYGHPLAIPSA-NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
            L+E  G+P+   S  +    I  T    ++       + L+IDGG    G E STI+++
Sbjct: 131 ALVEALGNPIVSTSIRDEDDVIEYTTDPELILEKWDDLVDLVIDGGYG--GNEASTIIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
             +  + I+R G  ++E  
Sbjct: 189 SEDDPI-IVREGKGDLEIF 206


>gi|239999590|ref|ZP_04719514.1| hypothetical protein Ngon3_08918 [Neisseria gonorrhoeae 35/02]
 gi|240014764|ref|ZP_04721677.1| hypothetical protein NgonD_08995 [Neisseria gonorrhoeae DGI18]
 gi|240017213|ref|ZP_04723753.1| hypothetical protein NgonFA_08608 [Neisseria gonorrhoeae FA6140]
 gi|240113362|ref|ZP_04727852.1| hypothetical protein NgonM_07292 [Neisseria gonorrhoeae MS11]
 gi|240116290|ref|ZP_04730352.1| hypothetical protein NgonPID1_08647 [Neisseria gonorrhoeae PID18]
 gi|240118578|ref|ZP_04732640.1| hypothetical protein NgonPID_08974 [Neisseria gonorrhoeae PID1]
 gi|240121287|ref|ZP_04734249.1| hypothetical protein NgonPI_05870 [Neisseria gonorrhoeae PID24-1]
 gi|240124121|ref|ZP_04737077.1| hypothetical protein NgonP_09310 [Neisseria gonorrhoeae PID332]
 gi|240126263|ref|ZP_04739149.1| hypothetical protein NgonSK_08652 [Neisseria gonorrhoeae SK-92-679]
 gi|240128790|ref|ZP_04741451.1| hypothetical protein NgonS_09224 [Neisseria gonorrhoeae SK-93-1035]
 gi|260439893|ref|ZP_05793709.1| hypothetical protein NgonDG_02184 [Neisseria gonorrhoeae DGI2]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----IHPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D     +HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQ--ATKDAPARALHP----KRKTIGLRIP 124


>gi|319639149|ref|ZP_07993903.1| hypothetical protein HMPREF0604_01527 [Neisseria mucosa C102]
 gi|317399588|gb|EFV80255.1| hypothetical protein HMPREF0604_01527 [Neisseria mucosa C102]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 21/197 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  I  PT++ Y L     + TA+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRSGGVIVYPTDSCYALGCKLGDKTAMERILTIRKIDQKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP   T   L
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNATALAL 132

Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++  G P     L +P         +T+   I    +   + L+IDGG    G E T V 
Sbjct: 133 LQELGEPILSCTLMLPEDEE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184

Query: 183 VQCEKKVRILRPGGLEI 199
           +       ++R G  +I
Sbjct: 185 IDMTDGTELIRQGKGDI 201


>gi|238788419|ref|ZP_04632212.1| hypothetical protein yfred0001_830 [Yersinia frederiksenii ATCC
           33641]
 gi|238723332|gb|EEQ14979.1| hypothetical protein yfred0001_830 [Yersinia frederiksenii ATCC
           33641]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y L     + +A+ R+  I++    +       D+S + 
Sbjct: 17  INQSVDVLRKGGVVVYPTDSGYALGCRLEDKSAMERICRIRQLDGNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L++
Sbjct: 77  TYAYVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|325282693|ref|YP_004255234.1| SUA5/yciO/yrdC domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324314502|gb|ADY25617.1| SUA5/yciO/yrdC domain protein [Deinococcus proteolyticus MRP]
          Length = 228

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 9/180 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETV+GL            L   K R          +   +    A   P  L   
Sbjct: 38  VAFPTETVWGLGAPPTQ-EGWEALIRAKGRDPKQAFQVSCASPQLALAWAQ-HPDLLRPL 95

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRS 143
             FWPGPLTLV+   +     P   A       RVP     + L+   G  L   S N S
Sbjct: 96  TAFWPGPLTLVVQARAGL---PEYLAPGGWVGLRVPAHPAAQALLHGSGGRLLTSSLNLS 152

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           GQ    +     +  + +++  + DGG    G  ST++ V  E  + +LR G L +  ++
Sbjct: 153 GQPVARSEAEARALGLAEQV--LGDGGQPPSGEASTVLRV-SETGLDVLRAGALRLADIR 209


>gi|83642946|ref|YP_431381.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396]
 gi|123535430|sp|Q2SQW8|RIMN_HAHCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|83630989|gb|ABC26956.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396]
          Length = 184

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 7/163 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KA   L  G  +A PTE V+GL  D     A+ R+ ++K+RP    LI     I    
Sbjct: 6   IQKAVSVLSRGGVLAYPTEAVWGLGCDPSCEDAVNRILQLKRRPWRKGLILVSGQIEHFS 65

Query: 72  KHASVDPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +     P       L  WPGP+T V+         PL          RV       +L +
Sbjct: 66  QLLDRLPQQQKDQILATWPGPVTWVVP--DPGVYAPLVRGAHDAIAIRVTAHPLVVELTK 123

Query: 130 TYGHPLAIPSAN---RSGQISITNVKHILSSSICKEIPLIIDG 169
            +G P+   SAN   R    ++ + +    S +   +P  + G
Sbjct: 124 AFGGPIVSTSANPATREPARTLFDCRRYFKSGVDHYLPGKLSG 166


>gi|224826312|ref|ZP_03699414.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002]
 gi|224601413|gb|EEG07594.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 11/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + L AG  I  PT++ Y L     +  A+ R+ +I++    + L    +D+S + 
Sbjct: 17  IREAVKILRAGGVIVYPTDSCYALGCLLGDKAAMERILDIRQLDLKHHLTLVCADLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD       K   PG  T +L     +    +HP       T   RVP       L
Sbjct: 77  NYARVDNSQFRQLKAATPGSYTFILQASKEVPRRTLHP----KRATIGLRVPEHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   + +  G        + +   + +++ L+IDGG    G E T V +    
Sbjct: 133 LAELGEPILSCTLSLPGDSEALTDPYEIRERMERQVDLVIDGGWC--GTEPTTV-IDLTD 189

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 190 GVELVRRG 197


>gi|332161875|ref|YP_004298452.1| hypothetical protein YE105_C2253 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666105|gb|ADZ42749.1| hypothetical protein YE105_C2253 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860991|emb|CBX71264.1| uncharacterized protein yciO [Yersinia enterocolitica W22703]
          Length = 206

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S + 
Sbjct: 17  INQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L++
Sbjct: 77  TYAYVDNPAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIRVG 198


>gi|319638767|ref|ZP_07993526.1| hypothetical protein HMPREF0604_01150 [Neisseria mucosa C102]
 gi|317400008|gb|EFV80670.1| hypothetical protein HMPREF0604_01150 [Neisseria mucosa C102]
          Length = 212

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 7/193 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  + A R+    L  G  +A PTE+ YGL      P A+ +L  +KKRP    +
Sbjct: 24  MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCIPTLPKALNQLIHLKKRPQHKGM 83

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFR 118
           I     +  ++        ++  + +  WP P T +L   +   + P L          R
Sbjct: 84  IVIGHSLEQLQPLLQRPSENIQTMLREAWPAPKTFLLP--AGKKVLPSLRGKRRSKLAVR 141

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     ++L +    PL   S NR+G+ +    + +      +++  ++ G I K    
Sbjct: 142 VPAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREV-RRQFGRKV-WVVGGLIGKQKTP 199

Query: 178 STIVNVQCEKKVR 190
           S I++ +   ++R
Sbjct: 200 SQIIDGETGARLR 212


>gi|124267942|ref|YP_001021946.1| hypothetical protein Mpe_A2757 [Methylibium petroleiphilum PM1]
 gi|124260717|gb|ABM95711.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 209

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 5/187 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G   AIPT++ Y L     +  A   L  I+     + L     D+S + 
Sbjct: 17  LKQAVQILHGGGIAAIPTDSSYALVCHLDDKAAAESLRRIRGVDDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD     L KL  PGP T +L+  +T ++   +S  + +T   RVP    T+ L+E
Sbjct: 77  NYARVDNRQYRLLKLGTPGPYTFILE--ATKEVPRRVSHPSRRTIGLRVPEHAVTQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +     +    N  H +     K++  I+D G   +   +T++++  ++ V
Sbjct: 135 LLGQPLLATTLIPPNEAEALNDPHEIRQRFEKQLQAIVDAGACPMQ-PTTVIDLSGDETV 193

Query: 190 RILRPGG 196
            + R  G
Sbjct: 194 LVRRGSG 200


>gi|312111086|ref|YP_003989402.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp.
           Y4.1MC1]
 gi|311216187|gb|ADP74791.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp.
           Y4.1MC1]
          Length = 758

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 14/178 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D +A+ KA + L +G  +AI     Y LA D+ N  A+++L   K+RP   PL    + +
Sbjct: 198 DGDAIDKAKQLLLSGAIVAIKGLGGYHLACDATNEQAVQQLRTRKQRPT-RPLAVMAASL 256

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           S+VK+   V+     +  L  P    +VL   +T  + P     LKT    +P      L
Sbjct: 257 SVVKQMCEVNDEEKRV--LTSPEAPIVVLKRKTTYPLAPSLAPGLKTVGVMLPYTPLHHL 314

Query: 128 IETYGH--PLAIPSANRSG-------QISITNVKHILSSSICKEIPLI--IDGGISKI 174
           +    H   L + SANRSG       + ++ ++K I    +    P++  ID  + +I
Sbjct: 315 LLDEEHIPVLVMTSANRSGVPILYKDEQALQDLKSIADYFLVHNRPIVHPIDDSVVQI 372


>gi|295400387|ref|ZP_06810366.1| SUA5/yciO/yrdC domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294977662|gb|EFG53261.1| SUA5/yciO/yrdC domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 497

 Score = 43.1 bits (100), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 14/178 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D +A+ KA + L +G  +AI     Y LA D+ N  A+++L   K+RP   PL    + +
Sbjct: 198 DGDAIDKAKQLLLSGAIVAIKGLGGYHLACDATNEQAVQQLRTRKQRPT-RPLAVMAASL 256

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           S+VK+   V+     +  L  P    +VL   +T  + P     LKT    +P      L
Sbjct: 257 SVVKQMCEVNDEEKRV--LTSPEAPIVVLKRKTTYPLAPSLAPGLKTVGVMLPYTPLHHL 314

Query: 128 IETYGH--PLAIPSANRSG-------QISITNVKHILSSSICKEIPLI--IDGGISKI 174
           +    H   L + SANRSG       + ++ ++K I    +    P++  ID  + +I
Sbjct: 315 LLDEEHIPVLVMTSANRSGVPILYKDEQALQDLKSIADYFLVHNRPIVHPIDDSVVQI 372


>gi|291279580|ref|YP_003496415.1| hypothetical protein DEFDS_1190 [Deferribacter desulfuricans
          SSM1]
 gi|290754282|dbj|BAI80659.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 203

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 24 PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
          P   PT+T+YG+     N  A  ++YEIKKR      I  +  +  +         +   
Sbjct: 24 PFIYPTDTIYGIGASYLNEEANNKIYEIKKRDKGKTFITLIGSVKQLYDLIDRSFFTNTH 83

Query: 84 AKL---FWPGPLTLVL 96
           K+   FWPG  T + 
Sbjct: 84 EKIINRFWPGSFTFIF 99


>gi|261416990|ref|YP_003250673.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373446|gb|ACX76191.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326738|gb|ADL25939.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 195

 Score = 43.1 bits (100), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L+    +  PTE+ Y +  ++ +  AI +LY +KK      +   V DI    
Sbjct: 15  VKQAAEILEDDGLVLYPTESGYAIGCNAESSKAIHKLYALKKPMKKFFMALIVPDIRFAT 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKKLI 128
            +A V   + ++ K   PGP T +L      D H     ++K      R+P   F K+L 
Sbjct: 75  GYAHVSNFAFNIIKQRVPGPYTFIL----PADPHIARKLDVKRPEIGIRIPTHPFFKELF 130

Query: 129 ETYGHPLAIPSANRSGQ 145
           + +  P+   +A  S +
Sbjct: 131 QHFDKPILSTAAKLSEE 147


>gi|297832740|ref|XP_002884252.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330092|gb|EFH60511.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 305

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 16/101 (15%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH-V 64
           DS  L+   E L  G    IPT+TVY L  D +N +A+ RL  IKK  +  PL  +C  +
Sbjct: 77  DSWKLQPVIELLKQGAVGVIPTDTVYALVCDCKNHSAVERLRRIKKIESSKPLSILCRSL 136

Query: 65  SDISM---------VKKHASVDPLSLHLAKLFWPGPLTLVL 96
            DI              HA+V        K   PGP T +L
Sbjct: 137 RDIDTFTMGFPRGDAHGHANV----FRAVKQCLPGPYTFIL 173


>gi|269213846|ref|ZP_05982985.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria cinerea ATCC 14685]
 gi|269145185|gb|EEZ71603.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria cinerea ATCC 14685]
          Length = 213

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 24  IKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDQKHHLTLVCADLSELG 83

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L   +T D+     HP      KT   R+P
Sbjct: 84  SYAKIDNVQFRQLKAATPGPYTCILQ--ATKDVPARTLHP----KRKTIGLRIP 131


>gi|148654173|ref|YP_001281266.1| SUA5/yciO/yrdC domain-containing protein [Psychrobacter sp.
          PRwf-1]
 gi|148573257|gb|ABQ95316.1| SUA5/yciO/yrdC, N-terminal domain [Psychrobacter sp. PRwf-1]
          Length = 262

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +A ++L  G  +A PTE+V+G+  D+ N  A+ ++  IK RP+   +I     I  ++
Sbjct: 30 EQAAQWLQQGKLLAYPTESVWGIGCDAYNQQAVEQILAIKNRPSEKGMIVVTDSIERIR 88


>gi|22330801|ref|NP_566156.2| yrdC family protein [Arabidopsis thaliana]
 gi|6091731|gb|AAF03443.1|AC010797_19 hypothetical protein [Arabidopsis thaliana]
 gi|19310491|gb|AAL84979.1| At3g1920/F28J7.25 [Arabidopsis thaliana]
 gi|23505865|gb|AAN28792.1| At3g1920/F28J7.25 [Arabidopsis thaliana]
 gi|332640214|gb|AEE73735.1| putative translation factor [Arabidopsis thaliana]
          Length = 307

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 16/101 (15%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH-V 64
           DS  L+   + L  G    IPT+TVY +A D +N +A+ RL  IKK  +  PL  +C  +
Sbjct: 79  DSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSL 138

Query: 65  SDISMVK---------KHASVDPLSLHLAKLFWPGPLTLVL 96
            DI              HA+V        K   PGP T +L
Sbjct: 139 RDIDTFTMGFPRGDGHGHANV----FRAVKQCLPGPYTFIL 175


>gi|330806735|ref|YP_004351197.1| hypothetical protein PSEBR_a71 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374843|gb|AEA66193.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 185

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 11/144 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    
Sbjct: 1   MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVERLLAIKSRLPDKGLILVAD 60

Query: 66  DISMVKKHASVDPLS-LHLAKLFWPGPLTLVL---DLLST--TDIHPLSTANLKTA---C 116
           +I          P + +      WPGP T ++   +LL    T +H   T  L+ +    
Sbjct: 61  NIHQFDFLFEDFPDTWMDRMASTWPGPNTWLVPHQNLLPEWITGVH--DTVALRVSDHPT 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSA 140
            R  C     L+ T  +P   P+A
Sbjct: 119 VRDLCSLVGPLVSTSANPQGRPAA 142


>gi|284006128|emb|CBA71369.1| RNA-binding protein [Arsenophonus nasoniae]
          Length = 189

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           + R     L+ G  IA PTE V+GL  D  N   +R+L  +K+R     LI    D   +
Sbjct: 8   SFRNIIAALNEGKIIAYPTEAVFGLGCDPDNEKTVRQLLLLKQRSWKKGLILIAGDYEQL 67

Query: 71  KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
             +   + L+ L    +   G  ++   + +  +     T    +   R+      KKL 
Sbjct: 68  IPYIDDNKLTNLQKEMMLSTGSKSITWVVPARKNTPKWLTGKFDSIAVRITNFELIKKLC 127

Query: 129 ETYGHPLAIPSANRSG 144
             YG PL   SAN +G
Sbjct: 128 FLYGKPLISTSANLNG 143


>gi|37526349|ref|NP_929693.1| hypothetical protein plu2456 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785780|emb|CAE14830.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 206

 Score = 43.1 bits (100), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 6/188 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           ++ + L  G  +  PT++ Y +     +  ++ R+  I++  + +       D+S +  +
Sbjct: 19  QSVDMLKKGGVVIYPTDSGYAIGCHLEDKDSMTRICRIRQLDSHHNFTLMCRDLSEISTY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD  +  L K   PG  T +  L +T ++   L     KT   RVP       L+E  
Sbjct: 79  AYVDNSAFRLIKNNTPGNYTFI--LRATKEVPRRLMNDKRKTIGLRVPSNPIALALLEQV 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL   S    G     +    +  ++ K++ LII GG   +G + T V    E    +
Sbjct: 137 GEPLMSTSLILPGNDFAESDPEEIKDNLGKQVDLIIHGGY--LGQQPTTVIDLTEDTPVV 194

Query: 192 LRPGGLEI 199
           +R G   I
Sbjct: 195 IREGAGNI 202


>gi|93007286|ref|YP_581723.1| SUA5/yciO/yrdC-like [Psychrobacter cryohalolentis K5]
 gi|122414663|sp|Q1Q7W4|RIMN_PSYCK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|92394964|gb|ABE76239.1| SUA5/yciO/yrdC-like [Psychrobacter cryohalolentis K5]
          Length = 214

 Score = 43.1 bits (100), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 6  ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
          ITDS    +A  +L  G  +A PTE+V+G+  D  N  A+ RL +IK+RP
Sbjct: 8  ITDSTI--QAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRP 55


>gi|187250803|ref|YP_001875285.1| (NiFe) hydrogenase maturation protein [Elusimicrobium minutum
           Pei191]
 gi|186970963|gb|ACC97948.1| (NiFe) hydrogenase maturation protein [Elusimicrobium minutum
           Pei191]
          Length = 736

 Score = 43.1 bits (100), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL+ A  FLD G   A+ +   Y LA D++NP A+  L   KKRP   PL     D+   
Sbjct: 200 ALKTAAVFLDKGKITAVKSIGGYHLACDAKNPKAVTSLRLSKKRP-YKPLAIMFKDLKTA 258

Query: 71  KKHASVDPL 79
           KK+  ++ +
Sbjct: 259 KKYCFINKI 267


>gi|238798392|ref|ZP_04641874.1| hypothetical protein ymoll0001_19710 [Yersinia mollaretii ATCC
           43969]
 gi|238717777|gb|EEQ09611.1| hypothetical protein ymoll0001_19710 [Yersinia mollaretii ATCC
           43969]
          Length = 184

 Score = 43.1 bits (100), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 6/180 (3%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S +  +A VD
Sbjct: 1   MLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVD 60

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
             +  L K   PG  T +L   +T ++   L     KT   RVP       L++  G PL
Sbjct: 61  NSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLDVLGEPL 118

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
              +    G     +    +   + K++ LII GG   +G + T V    +    ++R G
Sbjct: 119 MSTTLMLPGNDFAESDPEEIKDHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSPEVIREG 176


>gi|330830520|ref|YP_004393472.1| translation factor YciO [Aeromonas veronii B565]
 gi|328805656|gb|AEB50855.1| translation factor YciO [Aeromonas veronii B565]
          Length = 206

 Score = 43.1 bits (100), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 16/175 (9%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + +  G  I  PT++ Y L     +  A+ R+  I++  A +       D+S +  +
Sbjct: 19  QAVQIIQNGGVIVYPTDSGYALGCQMGDKGALERICRIRRLDANHDFTLVCRDLSEISTY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD  +  L K   PG  T +    +T ++   L     K+   RVP     + L+E  
Sbjct: 79  AKVDNSAFRLIKNNTPGAYTFIFK--ATKEVPRRLMNEKKKSIGIRVPDNKIAQALLEAL 136

Query: 132 GHPLA-----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           G PL      +P +    +I+  + + I    + K+I L+++GG   +G + T V
Sbjct: 137 GEPLLSTTLILPDS----EIAEFDPEEIF-DKLGKQIDLVVNGGY--LGEQPTTV 184


>gi|251792412|ref|YP_003007138.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533805|gb|ACS97051.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter aphrophilus
           NJ8700]
          Length = 207

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 19/193 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRKGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V      L K   PG  T +L   +T ++   L T+  KT   RVP       L++
Sbjct: 77  NYSLVPNSVYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALDLLK 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLESTIVN 182
             G P+       S  + + N +HI  S        + +++ LII GG   +G E T V 
Sbjct: 135 ALGEPIL------SCSLMLPNEEHITQSDPEEIRDRLERQVDLIIHGGY--LGQEPTTVV 186

Query: 183 VQCEKKVRILRPG 195
              +    ILR G
Sbjct: 187 DLTDSTPIILREG 199


>gi|149923373|ref|ZP_01911780.1| Sua5/YciO/YrdC/YwlC family protein [Plesiocystis pacifica SIR-1]
 gi|149815787|gb|EDM75311.1| Sua5/YciO/YrdC/YwlC family protein [Plesiocystis pacifica SIR-1]
          Length = 212

 Score = 43.1 bits (100), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 16/200 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVY--GLAVDS-RNPTAIRRLYEIKKRPAMNPLICHV 64
           D   L  A E L  G  I  PT+T Y  G A+ S +  + +R+L  I  + A  PL   V
Sbjct: 18  DPRKLSPAVEALQRGAVIIYPTDTGYAFGCALSSNKGISTLRKLKGIHAKHA-KPLTMLV 76

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---- 120
             ++ + ++  +   +  + +   PGP T+VL   +T+D+             R+P    
Sbjct: 77  ETLNDMGRYGVMPNTAFRVVRRLLPGPYTMVLR--ATSDVPRAMKNRTGEVGMRLPDHKV 134

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
           C     L+E  G PL   S               L +   ++I L+IDGG   I  E ST
Sbjct: 135 CNL---LVEHLGEPLLTGSLTPGEDSPELEDPAELEARYNRDIGLMIDGG--HIWPEPST 189

Query: 180 IVNVQCEKKVRILRPGGLEI 199
           ++       + +LR G  EI
Sbjct: 190 VLRFDERGDIEVLREGQGEI 209


>gi|50121220|ref|YP_050387.1| hypothetical protein ECA2292 [Pectobacterium atrosepticum SCRI1043]
 gi|49611746|emb|CAG75195.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 206

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S + 
Sbjct: 17  INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L+ 
Sbjct: 77  TYAHVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALDLLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   +    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 ALNEPLMSTTLMLQGNDFAESDPEEIQERLGKLVDLIIHGG--SLGQQPTTVIDLTESVP 192

Query: 190 RILRPG 195
           R+ R G
Sbjct: 193 RVAREG 198


>gi|262373289|ref|ZP_06066568.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262313314|gb|EEY94399.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 205

 Score = 43.1 bits (100), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S + 
Sbjct: 16  ITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD     L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNAMYRLLKNNTPAVTTFILPATSEVPKRLMHPKK----KTIGLRIPSNPIAQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +     Q    +  + + + + K I + IDGG   +   S IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPDQTEPLDDPYDIENQLGKRIDVFIDGGFGTLSTTS-IVDLSGEN 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIVRRG 197


>gi|162418116|ref|YP_001606745.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis Angola]
 gi|162350931|gb|ABX84879.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis Angola]
          Length = 176

 Score = 43.1 bits (100), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 6/174 (3%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PT++ Y L     + TA+ R+  I++    +       D+S +  +A VD  +  L K  
Sbjct: 3   PTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVDNSAFRLIKNN 62

Query: 88  WPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145
            PG  T +L   +T ++   L     KT   RVP       L++  G PL   +    G 
Sbjct: 63  TPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLDALGEPLMSTTLMLPGN 120

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
               +    +  ++ K++ LII GG   +G + T V    +    ++R G  ++
Sbjct: 121 DFAESDPEEIKENLGKQVDLIIHGG--SLGQQPTTVIDLTDSAPEVIREGAGDV 172


>gi|149608588|ref|XP_001515227.1| PREDICTED: similar to YRDC protein, partial [Ornithorhynchus
          anatinus]
          Length = 65

 Score = 42.7 bits (99), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
          AL  A   L AG  IA+PT+T+YGLA  + +  A+R +Y IK R    PL
Sbjct: 5  ALGLAVSALRAGGVIAVPTDTLYGLACSALSSAALRDVYRIKGRSGDKPL 54


>gi|238794708|ref|ZP_04638312.1| hypothetical protein yinte0001_18120 [Yersinia intermedia ATCC
           29909]
 gi|238725939|gb|EEQ17489.1| hypothetical protein yinte0001_18120 [Yersinia intermedia ATCC
           29909]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y L     +  A+ R+  I++    +       D+S + 
Sbjct: 17  INQSVDVLRKGGVVVYPTDSGYALGCRLEDKAAMERICRIRQLDGNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L++
Sbjct: 77  TYAYVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKDHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIREG 198


>gi|91228667|ref|ZP_01262582.1| putative translation factor [Vibrio alginolyticus 12G01]
 gi|254230518|ref|ZP_04923890.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio sp. Ex25]
 gi|262393862|ref|YP_003285716.1| YrdC family protein [Vibrio sp. Ex25]
 gi|269967048|ref|ZP_06181116.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91187788|gb|EAS74105.1| putative translation factor [Vibrio alginolyticus 12G01]
 gi|151936966|gb|EDN55852.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio sp. Ex25]
 gi|262337456|gb|ACY51251.1| YrdC family protein [Vibrio sp. Ex25]
 gi|269828307|gb|EEZ82573.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYARVDNSAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNQIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   +   + +I++GG   +G + T V    E + 
Sbjct: 135 ALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTVIDFSEGEP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 VVVRLG 198


>gi|304386703|ref|ZP_07368976.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ATCC
           13091]
 gi|304339218|gb|EFM05299.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ATCC
           13091]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 35  IKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 94

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL 96
            +A +D +     K   PGP T +L
Sbjct: 95  TYAKIDNVQFRQLKAATPGPYTFIL 119


>gi|325132982|gb|EGC55659.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M6190]
 gi|325138970|gb|EGC61520.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ES14902]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L     +    +HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTLHP----KRKTIGLRIP 124


>gi|225024541|ref|ZP_03713733.1| hypothetical protein EIKCOROL_01416 [Eikenella corrodens ATCC
           23834]
 gi|224942692|gb|EEG23901.1| hypothetical protein EIKCOROL_01416 [Eikenella corrodens ATCC
           23834]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 20/179 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  I  PT++ Y L     N  A+ R+  I++    + L    +D+S + 
Sbjct: 17  VKQAAEIVRQGGVIVYPTDSCYALGCQMGNKEAMERILAIRQIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP       L
Sbjct: 77  TYAKVDNSQFRQLKAATPGAYTFILPATKEVPNRTLHP----KRKTIGLRVPDNKIALAL 132

Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           +   G P     L +P      Q     ++++L  +    + LIIDGG    G E T V
Sbjct: 133 LAELGEPMLSCTLMLPEETEP-QTDPYEIRNLLEHA----VDLIIDGGWC--GTEPTTV 184


>gi|261391950|emb|CAX49412.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L     +    +HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTLHP----KRKTIGLRIP 124


>gi|153835312|ref|ZP_01987979.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio harveyi HY01]
 gi|156975029|ref|YP_001445936.1| hypothetical protein VIBHAR_02755 [Vibrio harveyi ATCC BAA-1116]
 gi|148868177|gb|EDL67330.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio harveyi HY01]
 gi|156526623|gb|ABU71709.1| hypothetical protein VIBHAR_02755 [Vibrio harveyi ATCC BAA-1116]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYARVDNSAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G P+   S    G     +    +   +   + +I++GG   +G + T V
Sbjct: 135 ALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGY--LGEQPTTV 184


>gi|297250433|ref|ZP_06864286.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria polysaccharea ATCC
           43768]
 gi|296838895|gb|EFH22833.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria polysaccharea ATCC
           43768]
          Length = 239

 Score = 42.7 bits (99), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 50  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDQKHHLTLVCADLSELG 109

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL 96
            +A +D +     K   PGP T +L
Sbjct: 110 TYAKIDNVQFRQLKAATPGPYTFIL 134


>gi|121635430|ref|YP_975675.1| hypothetical protein NMC1726 [Neisseria meningitidis FAM18]
 gi|120867136|emb|CAM10903.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
          Length = 254

 Score = 42.7 bits (99), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 42/85 (49%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 65  IKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 124

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL 96
            +A +D +     K   PGP T +L
Sbjct: 125 TYAKIDNVQFRQLKAATPGPYTFIL 149


>gi|254671067|emb|CBA07959.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L     +    +HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTLHP----KRKTIGLRIP 124


>gi|290475292|ref|YP_003468180.1| protein yciO [Xenorhabdus bovienii SS-2004]
 gi|289174613|emb|CBJ81407.1| Protein yciO [Xenorhabdus bovienii SS-2004]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 14/193 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + ++ + L  G  +  PT++ Y +     N  A+ R+  I++    +       D+S
Sbjct: 14  SRLIGQSVDMLKKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLDGRHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126
            +  +A VD  +  L K   PG  T +L   +T D+   L     KT   RVP       
Sbjct: 74  EIATYAHVDNQAFRLIKNNTPGNYTFILQ--ATKDVPRRLMNEKRKTIGLRVPSNPIALA 131

Query: 127 LIETYGHPLA----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           L+E    PL     I   N   +     +K +L     K++ LII GG   +G + T V 
Sbjct: 132 LLEGMREPLMSCSLILPGNDFAESDPEEIKDVLG----KQVDLIIHGGY--LGQQPTTVI 185

Query: 183 VQCEKKVRILRPG 195
                   +LR G
Sbjct: 186 DLTGDSPAVLREG 198


>gi|261210663|ref|ZP_05924955.1| YrdC family protein [Vibrio sp. RC341]
 gi|262402465|ref|ZP_06079026.1| YrdC family protein [Vibrio sp. RC586]
 gi|260840148|gb|EEX66728.1| YrdC family protein [Vibrio sp. RC341]
 gi|262351247|gb|EEZ00380.1| YrdC family protein [Vibrio sp. RC586]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y +     N   + R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYAVGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L     KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPDNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +  S+   + +I++GG   +G + T V    + ++
Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVILNGGY--LGQQPTTVIDFSDDEI 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARVG 198


>gi|237807720|ref|YP_002892160.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187]
 gi|237499981|gb|ACQ92574.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L  G  I  PT++ Y L     + +A+ ++  I++    +      +D+S + 
Sbjct: 17  ISQAVGILRQGGVIIYPTDSGYALGCMMGDKSALEKICRIRQLEDEHNFTLLCNDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A +D  +  L K   PG  T +L   +T ++   L     KT   RVP     + L+ 
Sbjct: 77  VYAKIDNTAFRLIKNNTPGAYTFILK--ATKEVPRRLMNEKKKTIGIRVPTNNIAQALLT 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    GQ             + K + LIIDGG    G + T V    + + 
Sbjct: 135 ELGEPLMSSTLILPGQALAEADPEEFRGQLEKVVDLIIDGGTQ--GAQPTTVIDFSDDEP 192

Query: 190 RILRPG 195
           +++R G
Sbjct: 193 KVVRFG 198


>gi|161503166|ref|YP_001570278.1| hypothetical protein SARI_01234 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864513|gb|ABX21136.1| hypothetical protein SARI_01234 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S + 
Sbjct: 17  INQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ VD ++  L K   PG  T +L    T ++   L     KT   RVP       L++
Sbjct: 77  TYSFVDNVAFRLIKNNTPGNYTFILK--GTKELPRRLLQEKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T   P+   S    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 TLSEPMLSTSLMLPGSDFTESDPEEIKERLEKQVDLIIHGGY--LGQQPTTVIDLTDDSP 192

Query: 190 RILRPG 195
            +LR G
Sbjct: 193 VVLRVG 198


>gi|26553519|ref|NP_757453.1| translation factor [Mycoplasma penetrans HF-2]
 gi|26453525|dbj|BAC43857.1| predicted translation factor [Mycoplasma penetrans HF-2]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 25/149 (16%)

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI  VS++  +     V+     LA  FWPG LTL+                 K   +R+
Sbjct: 85  LIRFVSNLDQI---PEVNETFKKLASKFWPGKLTLI----------------YKKESYRM 125

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLE 177
           P   F   LI+  G PL   SAN SG   ITN+     S +  K   + I+G   +    
Sbjct: 126 PDDKFILNLIDKTG-PLYSSSANLSGNPPITNIIDAFESFNKYKSDIIFIEGDYYQNNQP 184

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206
           STI ++       + R G ++ E +K+ I
Sbjct: 185 STIYDIDTN---TLKREGEIKYEWIKKTI 210


>gi|255530767|ref|YP_003091139.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
 gi|255343751|gb|ACU03077.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
          Length = 188

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA   L  G  I  PT+TV+GL  D+ N  A  ++  IK R      I  +   + ++
Sbjct: 6   IEKALAVLKDGGVILYPTDTVWGLGCDATNEQAAAKINAIKGRAEDKSFIVLLDTDAKIQ 65

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            + +  P   +    +   PLTLV      L+   I+   +  ++ A       F ++LI
Sbjct: 66  SYVTEVPDVAYDLIEYAENPLTLVFPGAKNLAKNVINADGSVGIRIARHE----FCQQLI 121

Query: 129 ETYGHPLAIPSANRSG 144
           + +  P+   SAN SG
Sbjct: 122 QRFRKPITSTSANVSG 137


>gi|325198880|gb|ADY94336.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis G2136]
          Length = 206

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP 120
            +A +D +     K   PGP T +L     +    +HP      KT   R+P
Sbjct: 77  TYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTLHP----KRKTIGLRIP 124


>gi|262369302|ref|ZP_06062630.1| yrdC domain-containing protein [Acinetobacter johnsonii SH046]
 gi|262315370|gb|EEY96409.1| yrdC domain-containing protein [Acinetobacter johnsonii SH046]
          Length = 205

 Score = 42.7 bits (99), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 8/176 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E + AG  +  PT+  Y +     N  A+ R+ +I+   A +      +D+S
Sbjct: 13  ARSISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGAKHQYAIICADLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FT 124
            +  +A VD     L K   P   T +L   S      +HP      KT   R+P     
Sbjct: 73  DIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVPKRLMHP----KKKTIGLRIPSNPVC 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           + L++  G PL   +     Q    +  + +   + K I + ID G+  +   S +
Sbjct: 129 QMLLKELGEPLLTSTLILPNQEEPLDDPYDIEMQLSKRIDVFIDSGLGTLSTTSIV 184


>gi|119509584|ref|ZP_01628731.1| SUA5/yciO/yrdC-like protein [Nodularia spumigena CCY9414]
 gi|119465773|gb|EAW46663.1| SUA5/yciO/yrdC-like protein [Nodularia spumigena CCY9414]
          Length = 200

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 11/185 (5%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH--ASVDP 78
           AGL ++ PT+TV  LA     P     ++  K+R    PLI   +    +  +   S + 
Sbjct: 19  AGLLVSFPTDTVPALAA---LPEKAGLIFAAKQRSQDKPLILMGASAEDLWPYVQGSENE 75

Query: 79  LSLH--LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
           L +   +A   WPG LTLVL   S      ++  +  T   RVP     + I      LA
Sbjct: 76  LKIWQDVANRHWPGALTLVLP-ASQKVPKQMNPTDPSTIGIRVPQSAIAQTILAQTGALA 134

Query: 137 IPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
             SAN SGQ  +  +  I      +    P   +G  S IG+ ST V+    +   ILR 
Sbjct: 135 TTSANFSGQQPLLKLAEIAEQFPEVLTLEPTQFNGEFSGIGVPST-VSKWTGRNWEILRQ 193

Query: 195 GGLEI 199
           G +++
Sbjct: 194 GTVKL 198


>gi|15618190|ref|NP_224475.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae CWL029]
 gi|15835805|ref|NP_300329.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae J138]
 gi|16752768|ref|NP_445036.1| Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae AR39]
 gi|4376543|gb|AAD18419.1| SuA5 Superfamily-related Protein [Chlamydophila pneumoniae CWL029]
 gi|7189407|gb|AAF38319.1| Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae AR39]
 gi|8978644|dbj|BAA98480.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae J138]
          Length = 286

 Score = 42.7 bits (99), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPL 79
           G  +A+PT+TVYG  +      A  RLY +K R        +V+ I  ++  +   + P 
Sbjct: 22  GKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDIENISGYPLSPT 81

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
           +  LA+LF PG +TLV+        H       +T  FR+      + I  +   L   S
Sbjct: 82  AKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREIVDHCGTLIGTS 133

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           AN S   S    + I +     ++  I DG  S  GLEST+V
Sbjct: 134 ANLSEFPSALTAQEIFADFADHDL-CIFDGPCSH-GLESTVV 173


>gi|117619033|ref|YP_857424.1| Sua5/YciO/YrdC/YwlC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560440|gb|ABK37388.1| Sua5/YciO/YrdC/YwlC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 229

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 16/177 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  I  PT++ Y L     +  A+ R+  I++    +       D+S + 
Sbjct: 40  ISQAVQIIQNGGVIVYPTDSGYALGCQMGDKGALERICRIRRIDPNHDFTLVCRDLSEIS 99

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +    +T ++   L     KT   RVP     + L+E
Sbjct: 100 TYAKVDNTAFRLIKNNTPGPYTFIFK--ATKEVPRRLMNEKKKTIGIRVPDNKIAQALLE 157

Query: 130 TYGHPLA-----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL      +P ++    ++  + + I    + K++ L+++GG   +G + T V
Sbjct: 158 ALGEPLLSTTLILPESD----MAEFDPEEIF-DKLGKQLDLVVNGGY--LGEQPTTV 207


>gi|332977635|gb|EGK14403.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. 1501(2011)]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT+T Y       +  AI +L  I++    +       D+S +  +A+VD     L 
Sbjct: 29  IIYPTDTSYAFGCKIGSKEAIEKLRLIRQLDDRHQFTLLCRDLSEIATYATVDNQQFKLL 88

Query: 85  KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           K   P P+T +LD  +T D+   LS    KT   RVP    ++ +++  G P+
Sbjct: 89  KASTPSPITFILD--ATKDVPKKLSHPKKKTIGIRVPSNPISQMILDAMGEPI 139


>gi|260597698|ref|YP_003210269.1| carbamoyltransferase hypF [Cronobacter turicensis z3032]
 gi|260216875|emb|CBA30419.1| Carbamoyltransferase hypF [Cronobacter turicensis z3032]
          Length = 764

 Score = 42.4 bits (98), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 19/148 (12%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL  A + L+ GL +AI     + LA D++NP A+ RL   K RPA  PL   ++D + +
Sbjct: 215 ALEAAIDALNEGLIVAIKGIGGFHLACDAQNPDAVARLRARKHRPA-KPLAVMLTDAAGL 273

Query: 71  KKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTA---NLKTACFRVPCG-FTK 125
              A         A+L  P  P+ LV        + PL  A    L      +P      
Sbjct: 274 PDDAR--------AQLTTPAAPIVLV----DNAHLPPLCEAIAPGLNETGVMLPANPLQH 321

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVK 152
            L++  G PL + S NRSG+  ++TN +
Sbjct: 322 LLMQGVGRPLVMTSGNRSGEPPALTNAQ 349


>gi|226941023|ref|YP_002796097.1| SUA5/YciO/YrdC/YwlC family protein [Laribacter hongkongensis HLHK9]
 gi|226715950|gb|ACO75088.1| SUA5/YciO/YrdC/YwlC family protein [Laribacter hongkongensis HLHK9]
          Length = 210

 Score = 42.4 bits (98), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 14/176 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISM 69
           +R+A + +  G  I  PT++ Y L     +  A+ R+  I++    +   L+CH  ++S 
Sbjct: 17  IREAVKIVREGGVIVYPTDSCYALGCRLSDKKAMDRIITIRQLDLRHHFTLVCH--NLSE 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT---DIHPLSTANLKTACFRVP-CGFTK 125
           +  +A VD     L K   PG  T +L          +HP      +T   RVP      
Sbjct: 75  LGTYARVDNTVYRLLKSVTPGAYTFILQATKEVPRRTLHP----KRQTIGLRVPDNAIAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            L+E  G P+   +    G+    +  + +  +I  ++ L+IDGG    G++ T V
Sbjct: 131 ALLEELGEPMLSCTLMLPGENEPPSDPYDIRDTIGPQVDLVIDGGYC--GVDPTTV 184


>gi|293611139|ref|ZP_06693437.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826390|gb|EFF84757.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 189

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A + L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     I+
Sbjct: 3  TTSVTEAAQCLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIN 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|261821581|ref|YP_003259687.1| hypothetical protein Pecwa_2310 [Pectobacterium wasabiae WPP163]
 gi|261605594|gb|ACX88080.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium wasabiae WPP163]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S + 
Sbjct: 17  INQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L+ 
Sbjct: 77  TYAHVDNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNPIALDLLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   +    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQEELGKLVDLIIHGG--SLGQQPTTVIDLTESVP 192

Query: 190 RILRPG 195
           R+ R G
Sbjct: 193 RVAREG 198


>gi|254784309|ref|YP_003071737.1| protein YrdC [Teredinibacter turnerae T7901]
 gi|237687380|gb|ACR14644.1| protein YrdC [Teredinibacter turnerae T7901]
          Length = 186

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 15/165 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLIC 62
           M      A+ +  + L+ G  IA PTE V+GL  D  N  A+ ++  +K+R P    +I 
Sbjct: 1   MDYRAHPAIHRCVDALNKGDVIAYPTEAVWGLGCDPFNQHAVDKVLWLKRRKPEKGLIIV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL----KTACFR 118
             S   +      + P         WPGP T ++        H    AN+     T   R
Sbjct: 61  AASAAQIQWLLQGITPAQEQQLSASWPGPNTWLIPH------HGRIPANVCGQHATIAVR 114

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSG---QISITNVKHILSSSI 159
           V      + L + YG P+   SAN          T V+H    S+
Sbjct: 115 VSSHPVVRALCQAYGGPIVSTSANPQALRPARDATQVRHYFRDSV 159


>gi|85712441|ref|ZP_01043490.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein
           [Idiomarina baltica OS145]
 gi|85693719|gb|EAQ31668.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein
           [Idiomarina baltica OS145]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 4/161 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  +  PT++ Y +     +  A+ R+ +I+     +       D+S + 
Sbjct: 17  IQQAVDIIRQGGIVVYPTDSGYAIGCQIGDKKAVDRICQIRDIDKEHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +L    T ++   L     KT   RVP       L+E
Sbjct: 77  TYARVDNDAFRLLKNNTPGPYTFILK--GTKEVPKRLLNPKRKTIGIRVPTNRIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
               PL   S          +    +   + K + LI+DGG
Sbjct: 135 ELNEPLMSTSLILGNNELAESDPETIREQLEKRVDLIVDGG 175


>gi|241760643|ref|ZP_04758735.1| translation factor SUA5 [Neisseria flavescens SK114]
 gi|241318824|gb|EER55350.1| translation factor SUA5 [Neisseria flavescens SK114]
          Length = 212

 Score = 42.4 bits (98), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 11/195 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  + A R+    L  G  IA PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 24  MMFPRILSAAAQRRLQAHLKKGGLIAYPTESCYGLGCVPTLSKALNQLIHLKKRPQHKGM 83

Query: 61  ICHVSDIS----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I     +     ++++ +      LH A   WP P T +L   S   +  L         
Sbjct: 84  IVIGHSLEQLQPLLQRPSENIQTMLHEA---WPAPKTFLLP-ASKKVLPSLRGKGRSKLA 139

Query: 117 FRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     ++L +    PL   S NR+G+ +    + +      +++  ++ G I K  
Sbjct: 140 VRVPAHAGARRLCQVLETPLVSTSCNRAGKRACKTEREV-RRQFGRKV-WVVGGLIGKQK 197

Query: 176 LESTIVNVQCEKKVR 190
             S I++ +   ++R
Sbjct: 198 TPSQIIDGETGARLR 212


>gi|238754969|ref|ZP_04616318.1| hypothetical protein yruck0001_15210 [Yersinia ruckeri ATCC 29473]
 gi|238706828|gb|EEP99196.1| hypothetical protein yruck0001_15210 [Yersinia ruckeri ATCC 29473]
          Length = 186

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 6/181 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L  G  I  PT++ Y L        A+ R+  I++    +       D+S +  +A V
Sbjct: 2   DVLRKGGVIVYPTDSGYALGCRLEEKAAMERICRIRQLDGNHNFTLVCRDLSELSTYAHV 61

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           D  +  L K   PG  T +L   +T ++   L     KT   RVP       L++  G P
Sbjct: 62  DNSAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLDVLGEP 119

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L   +    G     +    +   + K++ L+I GG   +G + T V    E    ++R 
Sbjct: 120 LMSTTLMLPGNDFAESDPEEIRDHLGKQVDLVIHGG--SLGQQPTTVIDLTESSPEVIRE 177

Query: 195 G 195
           G
Sbjct: 178 G 178


>gi|225075954|ref|ZP_03719153.1| hypothetical protein NEIFLAOT_00979 [Neisseria flavescens
           NRL30031/H210]
 gi|224952669|gb|EEG33878.1| hypothetical protein NEIFLAOT_00979 [Neisseria flavescens
           NRL30031/H210]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 21/197 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  I  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRSGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP   T   L
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNATALAL 132

Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++  G P     L +P  +      +T+   I    +   + L+IDGG    G E T V 
Sbjct: 133 LQELGEPILSCTLMLPEDDE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184

Query: 183 VQCEKKVRILRPGGLEI 199
           +       ++R G  +I
Sbjct: 185 IDMTDGTELIRQGKGDI 201


>gi|229525789|ref|ZP_04415194.1| hypothetical protein VCA_003425 [Vibrio cholerae bv. albensis
           VL426]
 gi|229339370|gb|EEO04387.1| hypothetical protein VCA_003425 [Vibrio cholerae bv. albensis
           VL426]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N   + R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L     KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPNNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +   +   + +I++GG   +G + T V    + +V
Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGY--LGQQPTTVIDFSDDEV 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARVG 198


>gi|269303145|gb|ACZ33245.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 286

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPL 79
           G  +A+PT+TVYG  +      A  RLY +K R        +V+ I  ++  +   + P 
Sbjct: 22  GKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDIENISGYPLSPT 81

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
           +  LA+LF PG +TLV+        H       +T  FR+      + I  +   L   S
Sbjct: 82  AKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREIVDHCGTLIGTS 133

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           AN S   S    + + +     ++  I DG  S  GLEST+V
Sbjct: 134 ANLSEFPSALTAQEVFADFADHDL-CIFDGPCSH-GLESTVV 173


>gi|152988004|ref|YP_001345419.1| hypothetical protein PSPA7_0023 [Pseudomonas aeruginosa PA7]
 gi|212288212|sp|A6UX84|RIMN_PSEA7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|150963162|gb|ABR85187.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 185

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 57/140 (40%), Gaps = 21/140 (15%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---CHVSDISMVK 71
           A   +  G  IA PTE V+GL  D  N  A+ RL  +K RP    LI    H+  +  + 
Sbjct: 10  AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAAHIHQLDFLL 69

Query: 72  KHASVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-------- 120
           +    D   + L +L   WPGP T    L+   D  P   T    +   RV         
Sbjct: 70  E----DLPDVWLERLAGTWPGPNTW---LVPHQDRLPEWVTGVHDSVAVRVTDHPLVQEL 122

Query: 121 CGFTKKLIETYGHPLAIPSA 140
           C  T  LI T  +P   P+A
Sbjct: 123 CYLTGPLISTSANPAGRPAA 142


>gi|71908079|ref|YP_285666.1| Sua5/YciO/YrdC/YwlC [Dechloromonas aromatica RCB]
 gi|71847700|gb|AAZ47196.1| Sua5/YciO/YrdC/YwlC [Dechloromonas aromatica RCB]
          Length = 208

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A EF+  G  +A+PT++ Y L     +  A+ ++  I++    + L   V D+S + 
Sbjct: 17  LAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMDDRHHLTLMVRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVP 120
             A VD     L K   PG  T +L+    L    +HP      KT   RVP
Sbjct: 77  HFARVDNAQYRLLKAATPGSYTFILEGSKELPRRVMHP----KRKTIGLRVP 124


>gi|241758536|ref|ZP_04756654.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria flavescens SK114]
 gi|241321309|gb|EER57463.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria flavescens SK114]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 21/197 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  I  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRGGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP   T   L
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNATALAL 132

Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++  G P     L +P  +      +T+   I    +   + L+IDGG    G E T V 
Sbjct: 133 LQELGEPILSCTLMLPEDDE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184

Query: 183 VQCEKKVRILRPGGLEI 199
           +       ++R G  +I
Sbjct: 185 IDMTDGTELIRQGKGDI 201


>gi|254492266|ref|ZP_05105440.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxidans
           DMS010]
 gi|224462591|gb|EEF78866.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxydans
           DMS010]
          Length = 207

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++AC+ +  G  +  PT++ Y L     +   + R+  I++  A +       D+S + 
Sbjct: 17  IKQACDIIRRGGLVVYPTDSGYALGCQIGDKNTMDRIRRIRQLDADHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A  +     L K   PG  T VL   +T ++   L     KT   R+P       L+E
Sbjct: 77  TYAKFNNAVFRLLKAHTPGSYTFVLP--ATKEVPKRLQHPKRKTIGLRIPEHTIALALLE 134

Query: 130 TYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGG 170
               PL   +    G  + +T+ + I+  +I K + LIIDGG
Sbjct: 135 ELDEPLMSSTLILPGDDLPMTDAEDIV-DAIGKHVDLIIDGG 175


>gi|229520393|ref|ZP_04409818.1| hypothetical protein VIF_000914 [Vibrio cholerae TM 11079-80]
 gi|229342491|gb|EEO07484.1| hypothetical protein VIF_000914 [Vibrio cholerae TM 11079-80]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N   + R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKYGMERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L     KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPNNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +   +   + +I++GG   +G + T V    + +V
Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGY--LGQQPTTVIDFSDDEV 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARVG 198


>gi|323497600|ref|ZP_08102617.1| hypothetical protein VISI1226_22275 [Vibrio sinaloensis DSM 21326]
 gi|323317349|gb|EGA70343.1| hypothetical protein VISI1226_22275 [Vibrio sinaloensis DSM 21326]
          Length = 206

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  +  KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNRIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G     +    +   +   +  I++GG   +G + T V    E + 
Sbjct: 135 ALGEPMMSTSLILPGNDYTESDPEDIRDKLEHAVDCILNGGY--LGEQPTTVVDFSEDEP 192

Query: 190 RILRPG 195
            I R G
Sbjct: 193 VIARVG 198


>gi|217966526|ref|YP_002352032.1| (NiFe) hydrogenase maturation protein HypF [Dictyoglomus turgidum
           DSM 6724]
 gi|217335625|gb|ACK41418.1| (NiFe) hydrogenase maturation protein HypF [Dictyoglomus turgidum
           DSM 6724]
          Length = 741

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D +   K  ++L+ G  +AI     + LA D+     ++RL E KKRP+  P    + DI
Sbjct: 192 DKDIFEKIAKYLEEGKILAIKGMGGFHLACDATKEDIVKRLRERKKRPS-KPFALMMKDI 250

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            M+K++  V      + K     P+ L L      DI PL     K     +P   +   
Sbjct: 251 EMIKEYCFVSKEEEKILKS-KEAPIVL-LRTRELKDISPLVAPGNKYLGVMLPYTPYHHL 308

Query: 127 LIETYGHPLAIPSANRSGQ 145
           + + +  P+ + S N S +
Sbjct: 309 IFDYFKKPIIMTSGNLSDE 327


>gi|318605611|emb|CBY27109.1| ycio family [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S + 
Sbjct: 17  INQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +    +T ++   L     KT   RVP       L++
Sbjct: 77  TYAYVDNPAFRLIKNNTPGNYTFIFK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +   + K++ LII GG   +G + T V    +   
Sbjct: 135 VLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG--SLGQQPTTVIDLTDSSP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 EVIRVG 198


>gi|262376934|ref|ZP_06070161.1| YrdC [Acinetobacter lwoffii SH145]
 gi|262308279|gb|EEY89415.1| YrdC [Acinetobacter lwoffii SH145]
          Length = 189

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A  +L  G  +A PTE V+GL  D  N  A  ++ E+K+RP    +I   + +S
Sbjct: 3  TTSVAEAAAWLKDGQVLAYPTEAVWGLGCDPYNEQAFHQILELKQRPIEKGVILLAAHLS 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|224082001|ref|XP_002195111.1| PREDICTED: yrdC domain containing (E. coli) [Taeniopygia guttata]
          Length = 162

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 15/123 (12%)

Query: 82  HLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
            L +   PGP+TLVL+       D++P ++        R+P   F + L      PLA+ 
Sbjct: 25  QLLRDLLPGPVTLVLERSEELNKDLNPFTS----LVGVRIPDHPFMRDLARACSGPLALT 80

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG-----LESTIVNVQCEKKVRIL 192
           SAN S Q S   V       +  ++ L++DGG I  I      L ST+V++    K  I+
Sbjct: 81  SANISSQGSTLTVLEF--QDLWPQLSLVVDGGPIGDIQSPECRLGSTVVDLSVSGKFSII 138

Query: 193 RPG 195
           RPG
Sbjct: 139 RPG 141


>gi|167624539|ref|YP_001674833.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354561|gb|ABZ77174.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   + +G  I  PT++ Y L     +  A+ ++  I++    +       D S + 
Sbjct: 17  ISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQIDNDHNFSLMCRDQSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130
            +A VD  +  L K   PGP T +  + S      L     KT   RVP       L+E 
Sbjct: 77  TYARVDNQAYRLLKQNTPGPYTFIF-MASKEVPKRLQNPKKKTIGIRVPDNVIALALLEA 135

Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            G PL   S    GQ  + ++ +HI    +  ++ LII GG   +G + T V    + ++
Sbjct: 136 LGEPLMSTSLILPGQEFTESDPEHI-RDILEHQVDLIIHGGY--LGEKPTTVIDLSDGEI 192

Query: 190 RILRPGGLEI 199
            ++R G  ++
Sbjct: 193 EVIREGAGDV 202


>gi|209522642|ref|ZP_03271200.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira maxima CS-328]
 gi|209496691|gb|EDZ96988.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira maxima CS-328]
          Length = 222

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 37/205 (18%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L  G  +  PT+TVY +  D    +A++++ +IK+     PL    S +S +  +A V
Sbjct: 22  DALKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIADYAIV 81

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGHP 134
              +    K   PG  T V   L  T + P  + +   KT   RVP            HP
Sbjct: 82  TDAAYRTIKRLIPGSYTFV---LPATKLVPKLVMSPKRKTTGIRVP-----------DHP 127

Query: 135 LAIPSANRSGQISITNVKHILS----SSICKEIP-----------------LIIDGGISK 173
           + +      G   I+   HI      S++ K+IP                 +I+D G   
Sbjct: 128 VCLAILESLGNPVISTSAHIKEEDEPSALIKKIPQEYDKVQLFDALENLVDIIVDDGADW 187

Query: 174 IGLESTIVNVQCEKKVRILRPGGLE 198
               STI+++  +  V + R  G E
Sbjct: 188 DYQVSTIIDLSADDPVLVRRGKGWE 212


>gi|219557202|ref|ZP_03536278.1| hypothetical protein MtubT1_07815 [Mycobacterium tuberculosis T17]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 14/190 (7%)

Query: 25  IAIPTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80
           + +PT+TVYG+A     SR P   R+   +    A+ P+   V     ++    S+   +
Sbjct: 7   VVMPTDTVYGIARRFDSSRWPRCCRQRGGV----AICPVGVLVGSWHTIEGLVYSMPDGA 62

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             L + FWPG L+LV+ + + +    L  A+  T   R+P      +L+   G P+A+ S
Sbjct: 63  RELIRAFWPGALSLVV-VQAPSLQWDLGDAH-GTVMLRMPLHPVAIELLREVG-PMAVSS 119

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG     + +    S +   + + +D G S+    STIV++      R+LR G +  
Sbjct: 120 ANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLRQGPVST 177

Query: 200 ETLKRAISVE 209
           E +   + V+
Sbjct: 178 ERIAEVLGVD 187


>gi|15641191|ref|NP_230823.1| hypothetical protein VC1178 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587790|ref|ZP_01677549.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728251|ref|ZP_01681284.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|153215328|ref|ZP_01949941.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153819097|ref|ZP_01971764.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823502|ref|ZP_01976169.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153826680|ref|ZP_01979347.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153829624|ref|ZP_01982291.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|183179583|ref|ZP_02957794.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227081350|ref|YP_002809901.1| hypothetical protein VCM66_1133 [Vibrio cholerae M66-2]
 gi|229505228|ref|ZP_04394738.1| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286]
 gi|229511102|ref|ZP_04400581.1| hypothetical protein VCE_002509 [Vibrio cholerae B33]
 gi|229515559|ref|ZP_04405018.1| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21]
 gi|229518221|ref|ZP_04407665.1| hypothetical protein VCC_002245 [Vibrio cholerae RC9]
 gi|229529734|ref|ZP_04419124.1| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)]
 gi|229608247|ref|YP_002878895.1| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236]
 gi|254226704|ref|ZP_04920281.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254291997|ref|ZP_04962776.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254848304|ref|ZP_05237654.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255745588|ref|ZP_05419536.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262158339|ref|ZP_06029455.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
 gi|262169497|ref|ZP_06037189.1| YrdC family protein [Vibrio cholerae RC27]
 gi|262191634|ref|ZP_06049812.1| YrdC family protein [Vibrio cholerae CT 5369-93]
 gi|297578778|ref|ZP_06940706.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298498720|ref|ZP_07008527.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757]
 gi|9655654|gb|AAF94337.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547954|gb|EAX58035.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629502|gb|EAX61928.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124114771|gb|EAY33591.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|125620765|gb|EAZ49122.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126510380|gb|EAZ72974.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518970|gb|EAZ76193.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|148874900|gb|EDL73035.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149739542|gb|EDM53770.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150422074|gb|EDN14042.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183012994|gb|EDT88294.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227009238|gb|ACP05450.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229333508|gb|EEN98994.1| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)]
 gi|229344936|gb|EEO09910.1| hypothetical protein VCC_002245 [Vibrio cholerae RC9]
 gi|229347328|gb|EEO12288.1| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21]
 gi|229351067|gb|EEO16008.1| hypothetical protein VCE_002509 [Vibrio cholerae B33]
 gi|229357451|gb|EEO22368.1| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286]
 gi|229370902|gb|ACQ61325.1| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236]
 gi|254844009|gb|EET22423.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255736663|gb|EET92060.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262022310|gb|EEY41019.1| YrdC family protein [Vibrio cholerae RC27]
 gi|262029780|gb|EEY48428.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
 gi|262032476|gb|EEY51036.1| YrdC family protein [Vibrio cholerae CT 5369-93]
 gi|297536372|gb|EFH75205.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297543053|gb|EFH79103.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757]
 gi|327483879|gb|AEA78286.1| YciO family [Vibrio cholerae LMA3894-4]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N   + R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L     KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPNNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +   +   + +I++GG   +G + T V    + +V
Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGY--LGQQPTTVIDFSDDEV 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARVG 198


>gi|258621658|ref|ZP_05716689.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258626397|ref|ZP_05721244.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|262171790|ref|ZP_06039468.1| YrdC family protein [Vibrio mimicus MB-451]
 gi|258581449|gb|EEW06351.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258585889|gb|EEW10607.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|261892866|gb|EEY38852.1| YrdC family protein [Vibrio mimicus MB-451]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y +     N   + R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYAVGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L     KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPDNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +  S+   + +I++GG   +G + T V    + ++
Sbjct: 135 ALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVILNGGY--LGQQPTTVIDFSDDEI 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARVG 198


>gi|90581221|ref|ZP_01237019.1| putative translation factor [Vibrio angustum S14]
 gi|90437592|gb|EAS62785.1| putative translation factor [Vibrio angustum S14]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  IKQAVEIIKNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +  VD ++  L +   PG  T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYTRVDNIAFRLLRNNTPGAYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G  +       +   +   + LI+ GG   +G + T V    E ++
Sbjct: 135 ALGEPLMSTSLILPGNETTEADPDEIRDKLEHAVDLIMHGGY--LGEQPTTVIDFSEGEI 192

Query: 190 RILRPGGLEI 199
            I+R G  ++
Sbjct: 193 NIVRVGAGDV 202


>gi|329957163|ref|ZP_08297730.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056]
 gi|328523431|gb|EGF50530.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056]
          Length = 204

 Score = 42.0 bits (97), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+ ++K   P  N L     D+S +
Sbjct: 15  LQQVIDILNDGGIIIYPTDTMYAIGCHGLKERAIERICQLKNIDPKKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLD 97
            ++A  D  +  L K   PG  T +L+
Sbjct: 75  SEYAKFDNNTFKLMKRNLPGAFTFILN 101


>gi|253998631|ref|YP_003050694.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. SIP3-4]
 gi|253985310|gb|ACT50167.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. SIP3-4]
          Length = 209

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK--KRPAMNPLICHVSDISMVK 71
           +A E L  G  +A PT++ Y L     N  A  R+  I+      +  L+C   ++S + 
Sbjct: 19  QAVEILRNGGVVAYPTDSSYALGCVVGNKDAQDRIRAIRGVDDDHLFTLVCR--NLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A VD     L K   PG  T +L   +T ++   L      T   RVP    T+ L+E
Sbjct: 77  VYAQVDNSQFRLLKANTPGQYTFILK--ATREVPRRLQHPKRSTLGLRVPDHAVTQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
               PL   S    G+  + N    +   +  ++ L+ID G
Sbjct: 135 ALDEPLLSMSLQLPGEEDVLNEAWEIRDRLEHQLDLVIDAG 175


>gi|53729058|ref|ZP_00134151.2| COG0009: Putative translation factor (SUA5) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208629|ref|YP_001053854.1| hypothetical protein APL_1161 [Actinobacillus pleuropneumoniae L20]
 gi|165976587|ref|YP_001652180.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190150488|ref|YP_001969013.1| hypothetical protein APP7_1219 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250090|ref|ZP_07336292.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253263|ref|ZP_07339412.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307246076|ref|ZP_07528158.1| hypothetical protein appser1_12790 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307248184|ref|ZP_07530212.1| hypothetical protein appser2_11650 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252800|ref|ZP_07534690.1| hypothetical protein appser6_13130 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255058|ref|ZP_07536876.1| hypothetical protein appser9_12920 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307257216|ref|ZP_07538987.1| hypothetical protein appser10_12150 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259494|ref|ZP_07541219.1| hypothetical protein appser11_12910 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261644|ref|ZP_07543311.1| hypothetical protein appser12_12040 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263832|ref|ZP_07545437.1| hypothetical protein appser13_12420 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097421|gb|ABN74249.1| hypothetical protein APL_1161 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165876688|gb|ABY69736.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189915619|gb|ACE61871.1| hypothetical protein APP7_1219 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302647945|gb|EFL78152.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651153|gb|EFL81307.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306853011|gb|EFM85234.1| hypothetical protein appser1_12790 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855361|gb|EFM87536.1| hypothetical protein appser2_11650 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306859699|gb|EFM91722.1| hypothetical protein appser6_13130 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861931|gb|EFM93907.1| hypothetical protein appser9_12920 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864258|gb|EFM96170.1| hypothetical protein appser10_12150 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866430|gb|EFM98293.1| hypothetical protein appser11_12910 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868636|gb|EFN00446.1| hypothetical protein appser12_12040 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870821|gb|EFN02560.1| hypothetical protein appser13_12420 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 205

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 15/194 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L        A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V   S  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALALIAA 134

Query: 131 YGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            G P     L +P      +I+ ++   I    +   + LII GG   +G E T V    
Sbjct: 135 LGEPILSCSLMLPDT----EITESDPDEI-REHLEHRVDLIIHGGY--LGQEPTTVIDLT 187

Query: 186 EKKVRILRPGGLEI 199
           E+  RI+R G  +I
Sbjct: 188 EESPRIIREGSGDI 201


>gi|295396779|ref|ZP_06806914.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970363|gb|EFG46303.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 8/123 (6%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKHA 74
           + ++ G  IA PT++ Y L     N   I R+  I++  A +   L+CH  D + + +  
Sbjct: 22  DVINNGGLIAYPTDSCYALGCSLDNKDGIERITRIRQLSAKHHFTLMCH--DFAQLGQFV 79

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYG 132
            VD  +    K   PGP T +L   +T ++   +  A  KT   R+P    +  LIE  G
Sbjct: 80  IVDNSAFRTIKALTPGPYTFILK--ATKEVPRRMLHAKKKTVGARIPQNRLSLDLIEQVG 137

Query: 133 HPL 135
            P+
Sbjct: 138 EPI 140


>gi|328676531|gb|AEB27401.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida Fx1]
          Length = 204

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 8/192 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D+S + 
Sbjct: 17  LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++A VD  +  L K + PG  T +L+  +T  +   L T +  T   RV   +  + I  
Sbjct: 77  EYAKVDNNAYRLLKRYTPGSYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134

Query: 131 -YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             G PL I S    G Q  +T+   +  S I   +  +++      G + T V    E  
Sbjct: 135 EIGEPLVISSFIVPGHQYVVTDCAEV-DSQIMNYLDAVVES--DYCGYDQTTVVELLELP 191

Query: 189 VRILRPGGLEIE 200
            +ILR G  EI+
Sbjct: 192 YQILRQGAGEID 203


>gi|321309523|ref|YP_004191852.1| putative translation factor/ribosome maturation factor [Mycoplasma
           haemofelis str. Langford 1]
 gi|319801367|emb|CBY92013.1| putative translation factor / ribosome maturation factor
           [Mycoplasma haemofelis str. Langford 1]
          Length = 156

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 33/176 (18%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           + +G    I T++V+G+    ++      +Y +KKRP    LI  +S  S +       P
Sbjct: 9   IKSGKAAIIATDSVFGIISKDKD-----LIYSLKKRPKEKQLILFISSASELP-----SP 58

Query: 79  LSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134
           +   L +L    WPG  T++                 K   +RVP      K+++  G P
Sbjct: 59  IPKDLEELVTSRWPGTFTII----------------YKGQGYRVPESNLLIKILKKTG-P 101

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           L   SAN SG+  + +++   + SI  E  L I G +   G  STI +   +K VR
Sbjct: 102 LWSSSANLSGEPVVKDLEE--AKSIFGEGILYIKGDVVPTGTPSTIYDYDNKKLVR 155


>gi|298493040|ref|YP_003723217.1| SUA5/yciO/yrdC domain-containing protein ['Nostoc azollae' 0708]
 gi|298234958|gb|ADI66094.1| SUA5/yciO/yrdC domain protein ['Nostoc azollae' 0708]
          Length = 192

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  I+ PT TV  LA     P     +Y  K+R    PLI   +    +  +     + 
Sbjct: 14  AGKLISFPTGTVPALATI---PEQAELIYAAKQRSLDKPLILMAAKTEDLWDYVQGSDIE 70

Query: 81  LHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
            H+ +     +WPG LTLVL   S      ++  +  T   RVP     + I  +  P+A
Sbjct: 71  YHIWQEVVNRYWPGALTLVLP-ASNKISQVMNPTDPTTIGIRVPNHTVAQTILAHTGPMA 129

Query: 137 IPSANRSGQISITNVKHI 154
             S N SGQ ++  +  I
Sbjct: 130 TTSVNLSGQPALQTLAEI 147


>gi|254430370|ref|ZP_05044073.1| hypothetical protein CPCC7001_260 [Cyanobium sp. PCC 7001]
 gi|197624823|gb|EDY37382.1| hypothetical protein CPCC7001_260 [Cyanobium sp. PCC 7001]
          Length = 202

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK--HA 74
           E L  G    +PT+T+  LA     P    +++ +K RPA  PLI   +D+  +      
Sbjct: 19  ERLRGGEAALLPTDTLPALAA---CPDHADQIWTLKSRPAEKPLILMGADLEQLLPLLGG 75

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
                 LHL    WPG LTLVL   ++  +         +   R+P C   + L+   G 
Sbjct: 76  PWRQEWLHLGHQGWPGALTLVLP--ASGPVAAALNPGRGSLGLRIPACEQARALLRLSG- 132

Query: 134 PLAIPSANRSGQ 145
           PLA  SAN SG+
Sbjct: 133 PLATTSANPSGR 144


>gi|325121146|gb|ADY80669.1| hypothetical protein BDGL_000083 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 195

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PT+  Y +     N  A+ R+ +I+     +       D+S +  +A VD  +  L K  
Sbjct: 22  PTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLSDIATYAKVDNATYRLLKAN 81

Query: 88  WPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
            P   T +L   S      +HP      KT   R+P     + L++  G PL   +    
Sbjct: 82  TPAITTFILPATSEVPRRLMHP----KKKTIGLRIPSNPICQALLKELGEPLLTSTLILP 137

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           GQ    +  + + + + K I + IDGG   +   ++IV++  E    I+R G
Sbjct: 138 GQEDPLDDPYDIENQLDKRIEVFIDGGFGTL-TSTSIVDLSGEHP-EIIRRG 187


>gi|160872342|ref|ZP_02062474.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsiella grylli]
 gi|159121141|gb|EDP46479.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsiella grylli]
          Length = 208

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 14/185 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT++ Y L     N   I+R+ +I++    + L     DIS +   A ++     L 
Sbjct: 30  IVYPTDSAYALGCQLTNKKGIQRIKQIRQLKDQHSLTLLCRDISEMAHFAQLETPIFRLI 89

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP-----LAIP 138
           K   PGP T +L   S    + L  A  KT   R+P       L+E    P     L +P
Sbjct: 90  KANTPGPYTFLLPATSHVPRY-LIHAKRKTIGIRIPDNKIVHALLEMNDQPLINTTLILP 148

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
            ++    +    ++ IL     K + L+IDGG    GLE T V         I+R G  E
Sbjct: 149 DSDLP-LLEPEAIRDILG----KRVDLVIDGGFC--GLELTTVIDLSGHIPHIIRCGKGE 201

Query: 199 IETLK 203
           I+  +
Sbjct: 202 IKPFQ 206


>gi|304399252|ref|ZP_07381118.1| SUA5/yciO/yrdC domain protein [Pantoea sp. aB]
 gi|304353178|gb|EFM17559.1| SUA5/yciO/yrdC domain protein [Pantoea sp. aB]
          Length = 190

 Score = 42.0 bits (97), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 35/170 (20%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           IA PTE V+GL  D  + +A+  L  +K+RP    LI   +D + ++ + S   LS +  
Sbjct: 23  IAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYTQLEPYISARELSVMQR 82

Query: 84  AKLF--W--------------PGPLTLVLDLLSTT-----DIHPL----------STANL 112
            ++F  W              P  LT   D L+       D+  L          ++ANL
Sbjct: 83  ERMFACWPGPVTFVVPVPPQTPRWLTGQFDSLAIRVSDHPDVQALCRAFGKPLVSTSANL 142

Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
                  PC   +++ + +G    + S    G+++ + ++ ++S  + ++
Sbjct: 143 SGL---PPCRTAEEVKQQFGEHFPVLSGKTGGRLNPSEIRDVISGELIRQ 189


>gi|307543967|ref|YP_003896446.1| translation factor [Halomonas elongata DSM 2581]
 gi|307215991|emb|CBV41261.1| K07566 putative translation factor [Halomonas elongata DSM 2581]
          Length = 195

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 3/188 (1%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +++  +++L  A   L  G  IA PTE V+GL  D  + +A+ RL  IK+R     +I  
Sbjct: 9   ITMLQASSLDTAVAALREGGVIAYPTEAVWGLGCDPDDTSALTRLLRIKRRDPAKGVILV 68

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            +D+          P     A L  P        +        L          RV    
Sbjct: 69  AADLDQFSPWLEGLP-DERRAVLAEPQAQPTTWLVPDNGRAAELVRGEHDKVALRVSDHP 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              +L   +G PL   SANR+G+ S  + + +       E+  ++DG +      STI +
Sbjct: 128 LVGELCRAFGGPLVSTSANRAGEPSAMSAEEV-RRVFGDELDALLDGPLGGHTRPSTIRD 186

Query: 183 VQCEKKVR 190
           +   + +R
Sbjct: 187 LATGRVLR 194


>gi|261253232|ref|ZP_05945805.1| YrdC family protein [Vibrio orientalis CIP 102891]
 gi|260936623|gb|EEX92612.1| YrdC family protein [Vibrio orientalis CIP 102891]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  +  KT   RVP       L+E
Sbjct: 77  LYARVDNGAFRLLKNNTPGPFTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNRIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +   +   +  I++GG   +G + T V    + + 
Sbjct: 135 ALGEPLMSTSLILPGNDITESDPEDIRDKLEHAVDCILNGGY--LGEQPTTVIDFSDDEP 192

Query: 190 RILRPG 195
           ++ R G
Sbjct: 193 KVARLG 198


>gi|92112840|ref|YP_572768.1| Sua5/YciO/YrdC/YwlC [Chromohalobacter salexigens DSM 3043]
 gi|91795930|gb|ABE58069.1| Sua5/YciO/YrdC/YwlC [Chromohalobacter salexigens DSM 3043]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 9/170 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  IA PT++ Y L     +  AI ++  ++     +      SD+S +  +A VD 
Sbjct: 24  LRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLDDKHNFTLMCSDLSEIGTYAKVDN 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
               L K   PGP T +L+  S      +HP      ++   RVP    T  L++  G P
Sbjct: 84  AVFRLLKAHTPGPYTFILNATSEVPRLLLHP----KRRSIGVRVPDHRITHALLDALGEP 139

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           L   +    G+        ++       +  +IDGG   +   +T+V+V+
Sbjct: 140 LMSVTLIPVGEDLPMTDPEVIRDRFGAHLDAVIDGGACHLD-PTTVVDVR 188


>gi|78485574|ref|YP_391499.1| Sua5/YciO/YrdC/YwlC [Thiomicrospira crunogena XCL-2]
 gi|78363860|gb|ABB41825.1| Sua5/YciO/YrdC/YwlC family protein [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 4/190 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  E L+ G  IA PTE+ Y L     N     R+  I++    +       D+S + 
Sbjct: 20  LLQVVEVLNKGGVIAYPTESGYALGCLLDNKEGADRIRAIRRLDEKHHFTLVCPDLSHLS 79

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIET 130
            +A V  +     K   PGP T +L   S      L T   KT   RV P   T  L+  
Sbjct: 80  AYAKVGNVQFRYLKSHLPGPYTFILP-ASREVPRRLQTPKRKTIGLRVTPNVVTNALLSY 138

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +  PL   S    G+         +  ++   +  ++DGG    G E T V    +    
Sbjct: 139 FDKPLISVSLILPGEDLPMTDGWSIQETLGHALDAVLDGGFC--GFEPTTVIDFTDDVPE 196

Query: 191 ILRPGGLEIE 200
           ++R G  E +
Sbjct: 197 LIRQGQGEFK 206


>gi|147674311|ref|YP_001216749.1| hypothetical protein VC0395_A0799 [Vibrio cholerae O395]
 gi|146316194|gb|ABQ20733.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227013095|gb|ACP09305.1| conserved hypothetical protein [Vibrio cholerae O395]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N   + R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L     KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNEKRKTIGIRVPNNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G     +    +   +   + +I++GG   +G + T V    + +V
Sbjct: 135 VLGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGY--LGQQPTTVIDFSDDEV 192

Query: 190 RILRPG 195
            + R G
Sbjct: 193 VVARVG 198


>gi|27366331|ref|NP_761859.1| YciO family [Vibrio vulnificus CMCP6]
 gi|37679408|ref|NP_934017.1| putative translation factor [Vibrio vulnificus YJ016]
 gi|320156839|ref|YP_004189218.1| YciO family [Vibrio vulnificus MO6-24/O]
 gi|27362532|gb|AAO11386.1| YciO family [Vibrio vulnificus CMCP6]
 gi|37198151|dbj|BAC93988.1| putative translation factor [Vibrio vulnificus YJ016]
 gi|319932151|gb|ADV87015.1| YciO family [Vibrio vulnificus MO6-24/O]
          Length = 206

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLDEKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  A  KT   RVP       L++
Sbjct: 77  IYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNRIALDLLD 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL   S    G+         +   +   + +I++GG   +G + T V
Sbjct: 135 ALGEPLMSTSLILPGKEVTEADPEEIRDKLEHAVDVILNGGY--LGEQPTTV 184


>gi|289810569|ref|ZP_06541198.1| hypothetical protein Salmonellaentericaenterica_41842 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 174

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PT++ Y L     +  A+ R+  I+  P  +       D+S +  ++ VD ++  L K  
Sbjct: 1   PTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSYVDNVAFRLMKNN 60

Query: 88  WPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145
            PG  T +L    T ++   L     KT   RVP       L++T G P+   S    G 
Sbjct: 61  TPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGS 118

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRILRPG 195
               +    +   + K++ LII GG   +G + +T++++  +  V +LR G
Sbjct: 119 DFTESDPEEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTNDSPV-VLREG 166


>gi|282899092|ref|ZP_06307073.1| SUA5/yciO/yrdC-like protein [Cylindrospermopsis raciborskii CS-505]
 gi|281196008|gb|EFA70924.1| SUA5/yciO/yrdC-like protein [Cylindrospermopsis raciborskii CS-505]
          Length = 190

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 25/203 (12%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+I+    +R A E    G  I+ PT+TV G+A     PT    +Y  K+R    PLI  
Sbjct: 1   MNISLDRLIRGAKE----GKIISFPTDTVPGMAT---IPTKAELIYIAKQRSLDKPLILM 53

Query: 64  VSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACF 117
            ++       VK       +   +   +WPG LTLV   L  +D  P  ++  +  T   
Sbjct: 54  GAEPESLWEYVKGSDQEYEIWQEVVNRYWPGALTLV---LPASDKVPRVMNPQDPTTIGI 110

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKI 174
           RVP     + I     P+A  S N SG+  +        + I  E P ++   +     +
Sbjct: 111 RVPNHPIARAILAQTGPMATTSVNLSGKPPLET-----QAEIAGEFPDVLTEELIEYKGL 165

Query: 175 GLESTIVNVQCEKKVRILRPGGL 197
           G+ ST+     E   +ILR G +
Sbjct: 166 GVPSTVAK-WTENHWQILRQGSI 187


>gi|254506994|ref|ZP_05119132.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus 16]
 gi|219549989|gb|EED26976.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus 16]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDEKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  +  KT   RVP       L+E
Sbjct: 77  LYARVDNSAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNQIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             G PL   S    G     +    +   +   +  I++GG   +G + T V
Sbjct: 135 ALGEPLMSTSLILPGNDYTESDPEDIRDKLEHAVDCILNGGY--LGEQPTTV 184


>gi|262374665|ref|ZP_06067938.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262310455|gb|EEY91546.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 189

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          +N++ +A + L  G  +A PTE V+GL  D  N  A + + E+K RP    +I     + 
Sbjct: 3  TNSIAEAADCLKQGQVLAYPTEAVWGLGCDPFNQQAFQDILELKHRPVEKGVILLAGHLE 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|332968321|gb|EGK07392.1| translation factor RimN [Kingella kingae ATCC 23330]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A PTE+ YGL     N   +R L  +KKRP    +I   ++ S ++ H    P
Sbjct: 39  LKRGGVVAYPTESCYGLGALPDNVRGLRTLLRLKKRPQHKGMIVIGANWSQLQPHLCRLP 98

Query: 79  L-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLA 136
              +   +  WP P T++L    T   +       K A  R+P     + L +     L 
Sbjct: 99  CDDVAALQAIWPAPKTVLLPAKPTVLPNLRGRGRNKLA-VRIPAHDIARGLCQQVQAALV 157

Query: 137 IPSANRSGQISITNVKHI 154
             S NR+ Q    N + +
Sbjct: 158 STSCNRAKQRPCRNEREV 175


>gi|332749609|gb|EGJ80026.1| ribosome maturation factor [Shigella flexneri K-671]
          Length = 106

 Score = 41.6 bits (96), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
          +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8  DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70 VKKH 73
          +K +
Sbjct: 68 LKPY 71


>gi|323144451|ref|ZP_08079054.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT
           12066]
 gi|322415766|gb|EFY06497.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT
           12066]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 4/162 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KAC  +++G    IPT++ Y L  +  +  A+ R+  I+K    +       D+S + 
Sbjct: 18  IKKACSIIESGGVGVIPTDSAYALCCNIGDKNAMERIAAIRKISKKHNFTLICRDLSELS 77

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V      L K   PG  T +L   +T ++   L     +T   RVP G   + L+ 
Sbjct: 78  TYAKVSNNVFRLLKNNTPGAYTFILP--ATKEVPRRLMNEKKRTIGIRVPAGAIIEALLN 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
               PL   S          N    ++  I   + +I+DGG+
Sbjct: 136 ECSEPLLSCSLILPDHEEPENDPITINDEIGSIVDVIVDGGV 177


>gi|56460847|ref|YP_156128.1| Sua5 family translation factor [Idiomarina loihiensis L2TR]
 gi|56179857|gb|AAV82579.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family [Idiomarina
           loihiensis L2TR]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 6/178 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PT++ Y +     N  A  R+ +I++    +       D+S +  +A VD  +  L 
Sbjct: 30  VVYPTDSGYAIGCQIGNKAAADRICQIREIDKEHNFTLMCRDLSELATYARVDNDAFRLL 89

Query: 85  KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           K   PGP T +L    T ++   L     KT   RVP       L+E    PL   S   
Sbjct: 90  KNNTPGPYTFILK--GTKEVPKRLLNPKRKTIGIRVPTNRIAMALLEELNEPLMSTSLIL 147

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
              +   +    +   + K + LIIDGG    G E T V    E    I R G  ++E
Sbjct: 148 GQGMLAESDPEEIRDKLEKLVDLIIDGGHK--GEEPTTVVDLSEGAPTIRREGSGDVE 203


>gi|166363633|ref|YP_001655906.1| putative translation factor [Microcystis aeruginosa NIES-843]
 gi|166086006|dbj|BAG00714.1| putative translation factor [Microcystis aeruginosa NIES-843]
          Length = 195

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 12/184 (6%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS----MVKKHASV 76
           +G  ++ PT+TV  LAV   +P     ++  KKR    PLI   +  +     V+ +   
Sbjct: 15  SGQVVSFPTDTVPALAV---SPPYAALIFAAKKRTFDKPLILMAASAADLWDYVEGNQEE 71

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   + +  WPG LTLVL          L+  N  T   RVP     + I      LA
Sbjct: 72  REIWRQMTEKHWPGSLTLVLPAAEKVP-KVLNPKNPSTIGIRVPAHAIAREILGRTGVLA 130

Query: 137 IPSANRSGQISITNVKHILSS--SICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
             SAN SGQ  +   + I+++  S+    P      GI   G  ST+   QC+    ILR
Sbjct: 131 TTSANLSGQEPLLTPEAIMTTFPSVTVLAPTERQAWGIINSGQPSTVARWQCQGW-DILR 189

Query: 194 PGGL 197
            G +
Sbjct: 190 QGAV 193


>gi|238921140|ref|YP_002934655.1| [NiFe] hydrogenase maturation protein HypF, [Edwardsiella ictaluri
           93-146]
 gi|238870709|gb|ACR70420.1| [NiFe] hydrogenase maturation protein HypF, putative [Edwardsiella
           ictaluri 93-146]
          Length = 774

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 8/130 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           LDAG  +A+     + LA D+ N  AI RL E K+RP   PL   + D+S + ++    P
Sbjct: 210 LDAGHIVAVKGLGGFHLACDAENDAAIARLRERKRRPG-KPLALMLPDLSWLARYCRAAP 268

Query: 79  LSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFTKKLIETY-GHPL 135
            +   A L  P  P+ LV      +D  P   A  L      +P      L+  + G PL
Sbjct: 269 DAGLQALLSSPAAPIVLV----PASDAVPAQVAPGLDEVGVMLPGTPLHHLLMAHIGRPL 324

Query: 136 AIPSANRSGQ 145
            + S N SGQ
Sbjct: 325 VMTSGNASGQ 334


>gi|261381413|ref|ZP_05985986.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria subflava NJ9703]
 gi|284795602|gb|EFC50949.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria subflava NJ9703]
          Length = 206

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 21/197 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  I  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRSGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP   T   L
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNATALAL 132

Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++  G P     L +P         +T+   I    +   + L+IDGG    G E T V 
Sbjct: 133 LQELGEPILSCTLMLPEDEE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184

Query: 183 VQCEKKVRILRPGGLEI 199
           +       ++R G  +I
Sbjct: 185 IDMTDGTELIRQGKGDI 201


>gi|15829084|ref|NP_326444.1| hypothetical protein MYPU_6130 [Mycoplasma pulmonis UAB CTIP]
 gi|14090028|emb|CAC13786.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 154

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 29/151 (19%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +   T+T+ GL     +   + ++YEIKKRP    +I  V  ++  +  +  +  +   A
Sbjct: 9   LVFTTDTLIGLG-GKVSDVILEKIYEIKKRPIDKKMIILVGSLAQAQSFSQWNLKANKQA 67

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-----CGFTKKLIETYGHPLAIPS 139
           + +WPG  TL+++                   FR+P     C F   LIE    PL   S
Sbjct: 68  QKYWPGATTLIVN----------------DQGFRMPKNKALCKF---LIEQ--GPLYTTS 106

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           AN SG  +I  +    +  I  +I   ID G
Sbjct: 107 ANLSGFENIKTLDE--AKKIFPQIKHFIDFG 135


>gi|313200705|ref|YP_004039363.1| sua5/ycio/yrdc/ywlc family protein [Methylovorus sp. MP688]
 gi|312440021|gb|ADQ84127.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. MP688]
          Length = 209

 Score = 41.6 bits (96), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK--KRPAMNPLICHVSDISMVK 71
           +A E L  G  +A PT++ Y L     N  A  R+  I+      +  L+C   ++S + 
Sbjct: 19  QAVEILRNGGVVAYPTDSSYALGCVVGNKDAQDRIRAIRGVDDDHLFTLVCR--NLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPC-GFTKKLIE 129
            +A VD     L K   PG  T +L   +T ++   L      T   RVP    T+ L+E
Sbjct: 77  VYAQVDNSQFRLLKANTPGQYTFILK--ATREVPRRLQHPKRSTLGLRVPDHAVTQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
               PL   S    G+  + N    +   +  ++ L+ID G
Sbjct: 135 ALDEPLLSMSLQLPGEEDVLNEAWEIRDRLEHQLGLVIDAG 175


>gi|320540532|ref|ZP_08040182.1| conserved protein [Serratia symbiotica str. Tucson]
 gi|320029463|gb|EFW11492.1| conserved protein [Serratia symbiotica str. Tucson]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L  G  I  PT++ Y L     + TA+ R+  I++  + +       D+S + 
Sbjct: 17  INQTMDVLRKGGVIVYPTDSGYALGCMLEDKTAMARICHIRQLGSNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD ++ HL K   PG  T +L   +T ++   L     KT   RVP       L+ 
Sbjct: 77  SYAYVDNIAYHLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGLRVPSNPIALALLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               P+   +    G     +    +S  + K++ L+I GG   +G + T V
Sbjct: 135 ALNEPMMSTTLMLPGNDFAESDPQEISDHLGKQVDLVIHGGF--LGQQPTTV 184


>gi|254415268|ref|ZP_05029030.1| hypothetical protein MC7420_2694 [Microcoleus chthonoplastes PCC
           7420]
 gi|196178074|gb|EDX73076.1| hypothetical protein MC7420_2694 [Microcoleus chthonoplastes PCC
           7420]
          Length = 205

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 12/132 (9%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH----VSDISMVKKHAS 75
           ++G  ++ PT+T+  LAV    P     ++ +K+R    PLI       S  S VK   +
Sbjct: 14  NSGQIVSFPTDTIPALAV---RPDYAELIFTLKQRSNNKPLILMGSFPSSLWSYVKGTDA 70

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGH 133
              +   +AK +WPG LTLV   L  +D  P  ++  +  T   RVP       I +   
Sbjct: 71  ELEIWQQVAKHYWPGALTLV---LPASDKVPAAMNPTDPTTIGLRVPDSRVAIAILSQTG 127

Query: 134 PLAIPSANRSGQ 145
           PLA  SAN SG+
Sbjct: 128 PLATTSANVSGK 139


>gi|119475272|ref|ZP_01615625.1| Sua5/YciO/YrdC family protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451475|gb|EAW32708.1| Sua5/YciO/YrdC family protein [marine gamma proteobacterium
           HTCC2143]
          Length = 184

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 10/138 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A   L  G  IA PTE+V+G   D  N  A+ +L  +K+RP    LI   +      +
Sbjct: 6   QRAARQLLVGNIIAYPTESVWGFGCDPDNQEAVAKLLSLKQRPVSKGLILVAASAEQFSR 65

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS--TANLKTACFRVPCGFTKKLIE- 129
           +  ++ LS  L + F   P  +    L   + H +S  T +  +   RV     K +++ 
Sbjct: 66  Y--LEGLSPSLQEKF-RRPTAVPTTWLVPANKHAMSWITGDYDSIALRVST--YKPVVDL 120

Query: 130 --TYGHPLAIPSANRSGQ 145
              +G PL   SAN +G+
Sbjct: 121 CVAFGTPLVSTSANTAGK 138


>gi|22299666|ref|NP_682913.1| hypothetical protein tll2123 [Thermosynechococcus elongatus BP-1]
 gi|22295850|dbj|BAC09675.1| tll2123 [Thermosynechococcus elongatus BP-1]
          Length = 197

 Score = 41.6 bits (96), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 21/185 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD----ISMVKKHASVDPLS 80
           I+ PT+TV  LA        I   Y  K+R    PLI   ++       V+  A+     
Sbjct: 23  ISFPTDTVPALASRCDRGELI---YTAKERQPDKPLILMGANPEQLWPFVRGSAAEWEQW 79

Query: 81  LHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
             +A  +WPG +TLVL        ++PL T    T   RVP     + +     PLA  S
Sbjct: 80  SAMAARYWPGAVTLVLPAAELPPGLNPLGTG---TIGLRVPDWPPAQALLQQTGPLATTS 136

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIID----GGISKIGLESTIVNVQCEKKVRILRPG 195
            NRSGQ  +  +      +I +E P ++              ST+V  Q   +  ILR G
Sbjct: 137 INRSGQPPLIEL-----GAIAREFPQVLTLHPWQLPPSPPQPSTVVQWQS-GQWHILRQG 190

Query: 196 GLEIE 200
            ++IE
Sbjct: 191 RVQIE 195


>gi|15595220|ref|NP_248712.1| hypothetical protein PA0022 [Pseudomonas aeruginosa PAO1]
 gi|107099015|ref|ZP_01362933.1| hypothetical protein PaerPA_01000023 [Pseudomonas aeruginosa PACS2]
 gi|116053742|ref|YP_788177.1| hypothetical protein PA14_00240 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888768|ref|YP_002437632.1| putative translation factor [Pseudomonas aeruginosa LESB58]
 gi|254237736|ref|ZP_04931059.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254243134|ref|ZP_04936456.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296386495|ref|ZP_06875994.1| putative translation factor [Pseudomonas aeruginosa PAb1]
 gi|313111455|ref|ZP_07797257.1| putative translation factor [Pseudomonas aeruginosa 39016]
 gi|81542151|sp|Q9I7A5|RIMN_PSEAE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|122262123|sp|Q02V59|RIMN_PSEAB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|9945841|gb|AAG03412.1|AE004441_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115588963|gb|ABJ14978.1| putative translation factor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169667|gb|EAZ55178.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196512|gb|EAZ60575.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218768991|emb|CAW24749.1| putative translation factor [Pseudomonas aeruginosa LESB58]
 gi|310883759|gb|EFQ42353.1| putative translation factor [Pseudomonas aeruginosa 39016]
          Length = 185

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  D  N  A+ RL  +K RP    LI   ++I  +    
Sbjct: 10  AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLDFLL 69

Query: 75  SVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CGFT 124
              P  + L +L   WPGP T ++       +    T    +   RV         C  T
Sbjct: 70  EDLP-DVWLDRLAGTWPGPNTWLVP--HQERLPEWVTGVHDSVAVRVTDHPLVQELCHLT 126

Query: 125 KKLIETYGHPLAIPSA 140
             LI T  +P   P+A
Sbjct: 127 GPLISTSANPAGRPAA 142


>gi|198283581|ref|YP_002219902.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665262|ref|YP_002426205.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248102|gb|ACH83695.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517475|gb|ACK78061.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 211

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A E L  G  +  PT+T Y L        +  RL  I++    + L    S IS + 
Sbjct: 17  LAQAAEVLRGGGLLVYPTDTCYALGCTVAARESQERLRRIRQLDLQHDLSLLFSSISQLT 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A +D  +  L +   PGP T +L   +T D+   L+    ++   R+P     + LI 
Sbjct: 77  DYAQLDDRAYALLRRILPGPYTFILP--ATRDVPRRLADPKKRSIGVRIPASPLCEGLIA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G  +       +  ++  ++ +++  G   +   ST+V++  +   
Sbjct: 135 ELGEPLMSSTLQLPGATAPLTDPDEICKTMGNQVDMVLLSGPGGVRC-STVVDL-LQWPP 192

Query: 190 RILRPG 195
           R+LR G
Sbjct: 193 RLLREG 198


>gi|317054482|ref|YP_004118507.1| (NiFe) hydrogenase maturation protein HypF [Pantoea sp. At-9b]
 gi|316952477|gb|ADU71951.1| (NiFe) hydrogenase maturation protein HypF [Pantoea sp. At-9b]
          Length = 757

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           S+T   AL++A   L  G  +A+     + LAVD+RNP A+ RL + K+RP+
Sbjct: 203 SVTGEAALQQAVAVLKNGGIVAVKGLGGFHLAVDARNPAAVERLRQRKRRPS 254


>gi|71066688|ref|YP_265415.1| hypothetical protein Psyc_2134 [Psychrobacter arcticus 273-4]
 gi|123647618|sp|Q4FPS7|RIMN_PSYA2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|71039673|gb|AAZ19981.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 214

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 6  ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
          ITDS  + +A  +L  G  +A PTE+V+G+  D  N  A+ +L  IK+RP    +I
Sbjct: 8  ITDS--VIQAAHWLKKGQLLAYPTESVWGIGCDPFNQQAVMQLLTIKQRPIEKGMI 61


>gi|167765241|ref|ZP_02437354.1| hypothetical protein BACSTE_03629 [Bacteroides stercoris ATCC
           43183]
 gi|167696869|gb|EDS13448.1| hypothetical protein BACSTE_03629 [Bacteroides stercoris ATCC
           43183]
          Length = 204

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L++  + L+ G  I  PT+T+Y +        AI R+ ++K   P  N L     D+S +
Sbjct: 15  LQQVIDILNDGGIIIYPTDTMYAIGCHGLKERAIERICQLKNTDPKKNNLSIICYDLSSI 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLD 97
            ++A  D  +  L K   PG  T +L+
Sbjct: 75  SEYAKFDNNTFKLMKRNLPGAFTFILN 101


>gi|301155130|emb|CBW14594.1| predicted ribosome maturation factor [Haemophilus parainfluenzae
           T3T1]
          Length = 183

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  +  + +A+R+L ++K+RP    LI     +  ++       LS   L
Sbjct: 16  VAYPTEAVFGLGCNPLSESAVRKLLDLKQRPIEKGLILVAPSLHFLQPFVDFSRLSNEQL 75

Query: 84  AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           A+L   +  P+T V+   +  ++    T    +   R+ C     K L ET G  L   S
Sbjct: 76  ARLQAQYEHPITWVVP--AKAEVPHFLTGQFDSIAVRL-CTHPAVKALCETTGFALTSTS 132

Query: 140 ANRSG 144
           AN +G
Sbjct: 133 ANLTG 137


>gi|261867922|ref|YP_003255844.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413254|gb|ACX82625.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 207

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 21/194 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V   +  L K   PG  T +L   +T ++   L T+  KT   RVP       L++
Sbjct: 77  TYSLVTNSAYRLIKNNTPGRYTFILT--ATKELPRRLMTSKRKTIGIRVPDNQIALDLLK 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLE-STIV 181
             G P+       S  + + N +H+  S        +  ++ LII GG   +G E +T+V
Sbjct: 135 ALGEPIL------SCSLMLPNEEHLTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVV 186

Query: 182 NVQCEKKVRILRPG 195
           ++  +  V ILR G
Sbjct: 187 DLTGDTPV-ILREG 199


>gi|282897709|ref|ZP_06305708.1| SUA5/yciO/yrdC-like protein [Raphidiopsis brookii D9]
 gi|281197388|gb|EFA72285.1| SUA5/yciO/yrdC-like protein [Raphidiopsis brookii D9]
          Length = 190

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 25/203 (12%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+I+    +R A E    G  I+ PT+TV G+A     PT    +Y  K+R    PLI  
Sbjct: 1   MNISLDRLVRGAKE----GKIISFPTDTVPGMAT---IPTKAELIYVAKQRSLDKPLILM 53

Query: 64  VSD----ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACF 117
            ++       VK       +   +   +WPG LTLV   L  +D  P  ++  +  T   
Sbjct: 54  GAEPESLWEYVKGSDQEYEIWQEVVNRYWPGALTLV---LPASDKVPRVMNPQDPTTIGI 110

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKI 174
           RVP     + I     P+A  S N SG+  +        + I  E P ++   +     +
Sbjct: 111 RVPNHPIARAILAQTGPMATTSVNLSGKPPLET-----QAEIAVEFPDVLTEELIEYKGL 165

Query: 175 GLESTIVNVQCEKKVRILRPGGL 197
           G+ ST+     E   +ILR G +
Sbjct: 166 GVPSTVAK-WTENHWQILRQGSI 187


>gi|254282932|ref|ZP_04957900.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR51-B]
 gi|219679135|gb|EED35484.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR51-B]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 15/180 (8%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   ++ G  I  PT++ Y L     N +A+ R+  I++    +       D+S +  +
Sbjct: 19  QAVTIVNKGGVIVYPTDSAYALGCLLGNKSALERIRRIRQLDDSHNFTLVCRDLSELGNY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIETY 131
           A VD  +  L +   PGP T +L+  +T ++   L     KT   RVP     + L+   
Sbjct: 79  ARVDNTAYRLIRAHTPGPFTFILE--ATREVPKRLQHPKRKTIGLRVPDNAIAQALLAEL 136

Query: 132 GHPLA----IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186
             P+     I   +        +++ IL       +  +IDGG    GLE T +V++ C+
Sbjct: 137 DAPMMSVTLIMPDDEYPLTDPYDIRDILE----HHVDAVIDGGYC--GLEPTSVVDMTCD 190


>gi|171059265|ref|YP_001791614.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6]
 gi|170776710|gb|ACB34849.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6]
          Length = 208

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 10/148 (6%)

Query: 28  PTETVYGLAV---DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           PT++ Y L     D     A+RR+  +  +  +  L+C   D+S +  +A VD     L 
Sbjct: 33  PTDSSYALVCQLDDKAAADALRRIRGVDDKHHLT-LLCR--DLSELSSYARVDNRQYRLL 89

Query: 85  KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           K   PGP T +L+  +T ++   LS  + +T   RVP    T+ L++ +G PL   +   
Sbjct: 90  KSATPGPYTFILE--ATKEVPRRLSHPSRRTIGLRVPDHRVTQDLLDLFGQPLLGTTLIP 147

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGG 170
            G+I   N    +     + + +I+D G
Sbjct: 148 PGEIHPLNDCAEIRERFERLVQVIVDAG 175


>gi|317492214|ref|ZP_07950643.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919553|gb|EFV40883.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 206

 Score = 41.2 bits (95), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 6/189 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +  E L  G  I  PT++ Y L        A+ R+  I+   + +       D+S
Sbjct: 14  SRLISQCVEVLRKGGVIVYPTDSGYALGCMLGEKNAMERICRIRNLDSNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126
            +  +A VD  +  L K   PG  T +L   +T ++   L +   KT   RVP       
Sbjct: 74  EISTYAFVDNTAFRLIKNNTPGHYTFILK--ATKEVPRRLMSEKRKTIGLRVPSNPIALD 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PL   +    G     +    +  ++ K + L+I GG   +G + T V    E
Sbjct: 132 LLAALGEPLMSTTLMLPGNDFAESDPEEIQDALGKVVDLVIHGGF--LGQQPTTVIDLTE 189

Query: 187 KKVRILRPG 195
               ++R G
Sbjct: 190 DSPEVVRVG 198


>gi|260776102|ref|ZP_05884997.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607325|gb|EEX33590.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 206

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRNGGVVIYPTDSGYALGCQLENKQALERICKIRRLDEKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PGP T +     T ++   L  +  KT   RVP       L+E
Sbjct: 77  LYARVDNTAFRLLKNNTPGPYTFIFK--GTKEVPRRLMNSKRKTIGIRVPDNQIALDLLE 134

Query: 130 TYGHPL 135
             G PL
Sbjct: 135 ALGEPL 140


>gi|238020912|ref|ZP_04601338.1| hypothetical protein GCWU000324_00809 [Kingella oralis ATCC 51147]
 gi|237867892|gb|EEP68898.1| hypothetical protein GCWU000324_00809 [Kingella oralis ATCC 51147]
          Length = 206

 Score = 41.2 bits (95), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 21/193 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  I  PT++ Y +     + TA+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAVEIVRKGGVIVYPTDSCYAIGCALGDKTAMERILAIRKIDLKHHLTLMCADLSDLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP       L
Sbjct: 77  TYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNAIALAL 132

Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++  G P     L +P  +      +T+   I    +   + L+IDGG    G E T V 
Sbjct: 133 LKELGEPMLSSTLMLPEDDE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 184

Query: 183 VQCEKKVRILRPG 195
           +     V ++R G
Sbjct: 185 IDMTDGVELVRQG 197


>gi|330956061|gb|EGH56321.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7]
          Length = 82

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
          +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    +I
Sbjct: 7  VQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNI 62


>gi|330955918|gb|EGH56178.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7]
          Length = 77

 Score = 41.2 bits (95), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 31/56 (55%)

Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
          +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    +I
Sbjct: 7  VQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNI 62


>gi|325576777|ref|ZP_08147392.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160983|gb|EGC73101.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC
           33392]
          Length = 183

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-----HASVDPL 79
           +A PTE V+GL  +  + +A+R+L ++K+RP    LI    ++  +++     H S + L
Sbjct: 16  VAYPTEAVFGLGCNPLSESAVRKLLDLKQRPIEKGLILVAPNLHFLQQFIDFSHLSDEQL 75

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAI 137
           S   A+  +  P+T V+   +  ++    T    +   R+ C     K L E  G  L  
Sbjct: 76  SRLQAQ--YDHPITWVVP--AKAEVPHFLTGQFNSIAVRL-CTHPAVKALCEKTGFALTS 130

Query: 138 PSANRSGQISITNVKHILSS 157
            SAN +G+    N   + S 
Sbjct: 131 TSANLTGKSPCRNADAVRSQ 150


>gi|254373899|ref|ZP_04989381.1| hypothetical protein FTDG_00053 [Francisella novicida GA99-3548]
 gi|151571619|gb|EDN37273.1| hypothetical protein FTDG_00053 [Francisella novicida GA99-3548]
          Length = 204

 Score = 41.2 bits (95), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 8/192 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D+S + 
Sbjct: 17  LKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++A VD  +  L K + PG  T +L+  +T  +   L T +  T   RV   +  + I  
Sbjct: 77  EYAKVDNNAYRLLKRYTPGSYTFILN--ATKKVSSLLVTKSKNTVGIRVSEHYVPRAISA 134

Query: 131 -YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             G PL I S    G Q  +T+   +  S I   +  +++      G + T V    E  
Sbjct: 135 EIGEPLVISSFIVPGHQYVVTDCAEV-DSQIMNYLDAVVES--DYCGYDPTTVVELLELP 191

Query: 189 VRILRPGGLEIE 200
            +ILR G  EI+
Sbjct: 192 YQILRQGAGEID 203


>gi|330445591|ref|ZP_08309243.1| yrdC domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489782|dbj|GAA03740.1| yrdC domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 206

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  IKQAVEIIKNGGVVVYPTDSGYALGCQLENKAALERICQIRRLNEKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +  VD ++  L +   PG  T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYTRVDNVAFRLLRNNTPGAYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G  +  +    +   +   + LI+ GG   +G + T V    + ++
Sbjct: 135 ALGEPLMSTSLILPGNDTTESDPDEIRDKLEHAVDLIMHGGY--LGEQPTTVIDFSDGEI 192

Query: 190 RILRPGGLEI 199
            ++R G  ++
Sbjct: 193 EVVRVGAGDV 202


>gi|260905265|ref|ZP_05913587.1| translation factor SUA5 [Brevibacterium linens BL2]
          Length = 206

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 14/167 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA + L  G  IA PT++ Y L     N   I R+  I++  + +       D + + 
Sbjct: 17  IEKAVQTLRDGGLIAYPTDSGYALGCALDNKAGIERITRIRQLDSKHHFTLMCRDFAQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFTK-KLIE 129
           +   VD     + K   PGP T ++   +T ++   +  A   +   R+P   T   L+E
Sbjct: 77  QFVIVDNSDFRVIKSMTPGPYTFIMK--ATKEVPRRMMHAKKHSVGARIPQNVTALALVE 134

Query: 130 TYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
             G P     L +P A    +  +T    ++   I  E+  +I+ G+
Sbjct: 135 AMGEPILSSTLLLPGA----EDPLTQADEVV-EQIGHELDAVIESGV 176


>gi|146312826|ref|YP_001177900.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter sp. 638]
 gi|145319702|gb|ABP61849.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter sp. 638]
          Length = 751

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            +  NAL+ A + L AG  +AI +   + L  D+RN  AI RL E K RPA  PL   V+
Sbjct: 194 FSHENALQVAVKLLKAGGVVAIKSLGGFHLVCDARNIQAISRLRERKHRPA-KPLAVMVA 252

Query: 66  DIS 68
           D++
Sbjct: 253 DVA 255


>gi|294649549|ref|ZP_06726969.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824536|gb|EFF83319.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + + AG  +  PT+  Y +     N +A+ R+ +I+     +       D+S + 
Sbjct: 16  ITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD     L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNAMYRLLKNNTPAVTTFILPATSEVPKRLMHP----KKKTIGLRIPSNPVAQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +     Q    +  + + S + K I + ID G   +   S IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPDQKDPLDDPYDIESQLGKRIDVFIDSGFGTLSTTS-IVDLSGEN 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIIRRG 197


>gi|145349506|ref|XP_001419173.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579404|gb|ABO97466.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 244

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH-VSDIS 68
           L +  E +  G   AIPT+T Y    D  N  A+++LY+IK      PL  +C   +DI 
Sbjct: 19  LDQVAEAIRRGEVGAIPTDTKYAFVADLTNADAVQKLYDIKDAGLNKPLSILCRGFADID 78

Query: 69  MVKKHASVDP-----LSLHLAKLFWPGPLTLVL 96
                   +P     L   LAK   PGP T +L
Sbjct: 79  AYTTGFPNNPKPGATLPFKLAKQCLPGPYTFIL 111


>gi|119944820|ref|YP_942500.1| Sua5/YciO/YrdC/YwlC family protein [Psychromonas ingrahamii 37]
 gi|119863424|gb|ABM02901.1| translation factor SUA5 [Psychromonas ingrahamii 37]
          Length = 206

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 14/194 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L  G  I  PT++ Y L     N   + ++ +I+     +       D+S + 
Sbjct: 17  IKQAVEILKKGGVIIYPTDSGYALGCTMDNKHGLDKICQIRDLNKKHNFTLVCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFTK-KLIE 129
            +A VD  +    K   PG  T +    ST D+   L     +T   R+P       L+ 
Sbjct: 77  TYARVDNHAFRALKNNTPGAYTFIFK--STKDLPKRLMNPTKRTIGIRIPNNVIALALLA 134

Query: 130 TYGHPLAIPS----ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             G PL   S     N S +    ++K  LS+    ++ LI+ GG   +G   T V    
Sbjct: 135 ELGEPLMTTSLILPGNTSTEFDPEDIKDKLSN----QVDLIMTGGY--LGESPTTVIDFS 188

Query: 186 EKKVRILRPGGLEI 199
           +  V I R G  +I
Sbjct: 189 DDDVVITRIGAGDI 202


>gi|194367364|ref|YP_002029974.1| SUA5/yciO/yrdC domain [Stenotrophomonas maltophilia R551-3]
 gi|194350168|gb|ACF53291.1| SUA5/yciO/yrdC domain [Stenotrophomonas maltophilia R551-3]
          Length = 196

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 6/138 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L AG  IA PTE V+GL  D  +  A+  +  +K+RP    +I   ++++ ++
Sbjct: 16  LDSAVASLRAGGVIAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAAELAQLE 75

Query: 72  KHASVD--PLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +   P +   A L  WPG  T +L       +    T        R+        L
Sbjct: 76  GWVRLQALPDARQRAVLASWPGANTWILPAGPRAQL--WITGEHSGIAVRISAHPLVAAL 133

Query: 128 IETYGHPLAIPSANRSGQ 145
              +G PL   SAN +G+
Sbjct: 134 CRAWGGPLVSTSANLAGE 151


>gi|194337081|ref|YP_002018875.1| (NiFe) hydrogenase maturation protein HypF [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309558|gb|ACF44258.1| (NiFe) hydrogenase maturation protein HypF [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 849

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A  FL  G+ +A+     + LAVD+RN  A+RRL E K R A  P    + D S
Sbjct: 247 GDVVAEAVAFLRRGMIVALKGLGGFHLAVDARNEAAVRRLRERKGREA-KPFAVMIRDRS 305

Query: 69  MVKKHASV 76
           +V  +  V
Sbjct: 306 LVHGYCEV 313


>gi|149907888|ref|ZP_01896556.1| Sua5/YciO/YrdC/YwlC family protein [Moritella sp. PE36]
 gi|149808894|gb|EDM68825.1| Sua5/YciO/YrdC/YwlC family protein [Moritella sp. PE36]
          Length = 206

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L  G  I  PT++ Y L     +  A+ R+ +I+K    +       D+S + 
Sbjct: 17  ISQAVAILRDGGVIIYPTDSGYALGCHLGDKNALERICKIRKLDKDHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A V+  +    K   PGP T +     T ++   L     KT   RVP       ++E
Sbjct: 77  LYARVENQAYRALKNNTPGPFTFIFK--GTKEVPRRLMNPKRKTIGIRVPDNTIALAILE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S    G          +   +  ++ LII+GG   +G + T V    E   
Sbjct: 135 ALGEPMMSTSLILPGNEGAEFDPEAIRDQLENQVELIINGGY--LGEQVTTVVDYSEGDA 192

Query: 190 RILRPG 195
            I+R G
Sbjct: 193 VIVRQG 198


>gi|50083490|ref|YP_045000.1| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp.
          ADP1]
 gi|81393947|sp|Q6FFH9|RIMN_ACIAD RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|49529466|emb|CAG67178.1| putative ribosome maturation factor (dsRNA-binding protein)
          (RimN) [Acinetobacter sp. ADP1]
          Length = 192

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A   L  G  +A PTE V+GL  D  N  A R++  +K+RP    +I    D+ 
Sbjct: 5  TTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLAGDVG 64

Query: 69 MVK 71
           ++
Sbjct: 65 QIE 67


>gi|262375678|ref|ZP_06068910.1| yrdC domain-containing protein [Acinetobacter lwoffii SH145]
 gi|262309281|gb|EEY90412.1| yrdC domain-containing protein [Acinetobacter lwoffii SH145]
          Length = 205

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 20/179 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP------LICHVS 65
           + +A E + AG  +  PT+  Y +     N +A+ R+ +I+    + P      L C +S
Sbjct: 16  ISQAVERIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIR---GLGPKHQYAILCCDLS 72

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG 122
           DI+    +A VD     L K   P   T +L   S      +HP      KT   R+P  
Sbjct: 73  DIA---TYAKVDNAMYRLLKNNTPAITTFILPATSEVPRRLMHP----KKKTIGLRIPNN 125

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
              + L++  G PL   +    GQ    +  + +   + K I + +D G+  +   S +
Sbjct: 126 PVCQMLLKELGEPLLTSTLILPGQTDPLDDPYDIEMQLGKRIDVFVDSGLGTLSTTSIV 184


>gi|284053293|ref|ZP_06383503.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira platensis str.
           Paraca]
          Length = 275

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 13/191 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +  PT+TVY +  D    +A++++ +IK+     PL    S +S +  +A V  
Sbjct: 77  LKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIADYAIVTD 136

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETYGHPLA 136
            +    K   PG  T VL   +T  +  L  +   KT   RVP       ++E+ G+P+ 
Sbjct: 137 EAYRTIKKLIPGSYTFVLP--ATKQVPKLVMSPKRKTTGIRVPDHPVCLAILESLGNPVI 194

Query: 137 IPSANRSGQ---------ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             SA+   +         I     K  L  ++   + +I+D G       STI+++  + 
Sbjct: 195 STSAHIKEEDEPSALIRKIPQNYDKFQLFDALENLVDIIVDDGADLDYQVSTIIDLSADD 254

Query: 188 KVRILRPGGLE 198
            V + R  G E
Sbjct: 255 PVLVRRGKGWE 265


>gi|308807076|ref|XP_003080849.1| translation factor-like (ISS) [Ostreococcus tauri]
 gi|116059310|emb|CAL55017.1| translation factor-like (ISS) [Ostreococcus tauri]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 26  AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH-VSDISMV-----KKHASVD 77
           AIPT+T Y    D  N +A+++LY+IK      PL  +C   +DI        K     +
Sbjct: 98  AIPTDTKYAFVADMSNASAVQKLYDIKGCGYNKPLSILCRGFADIDAYTTGFPKNVKPGE 157

Query: 78  PLSLHLAKLFWPGPLTLVL 96
            L   LAK   PGP T +L
Sbjct: 158 TLPFKLAKKCLPGPYTFIL 176


>gi|269102963|ref|ZP_06155660.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162861|gb|EEZ41357.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 221

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     N +A+ R+ +I++    +       D+S + 
Sbjct: 31  INQAVEIIRNGGVIVYPTDSGYALGCQLENKSALERICQIRRLNDKHNFTLLCRDLSEIS 90

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L +   PG  T +     T D+   L     KT   RVP       L+ 
Sbjct: 91  LYARVDNAAFRLLRNNTPGAYTFIFK--GTKDVPRRLMNPKRKTIGIRVPDNQIALDLLA 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   S          +    +   +   + LII GG   +G + T V       +
Sbjct: 149 ALGEPMMSTSLILPNHEMTESDPDEIRDKLEHAVDLIIHGGY--LGEQPTTVIDFSNDDI 206

Query: 190 RILRPG 195
            I+R G
Sbjct: 207 EIVRVG 212


>gi|33151637|ref|NP_872990.1| hypothetical protein HD0414 [Haemophilus ducreyi 35000HP]
 gi|81423817|sp|Q7VNS3|RIMN_HAEDU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|33147858|gb|AAP95379.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 184

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
          N L    E L     +A PTE+V+GL  +  N  AIR+L ++K RP    LI
Sbjct: 2  NNLLAVIELLKQNQVVAYPTESVFGLGCNPNNEEAIRQLLQLKNRPIEKGLI 53


>gi|89074055|ref|ZP_01160556.1| putative translation factor [Photobacterium sp. SKA34]
 gi|89050193|gb|EAR55704.1| putative translation factor [Photobacterium sp. SKA34]
          Length = 206

 Score = 40.8 bits (94), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  IKQAVEIIKNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +  VD ++  L +   PG  T +     T ++   L  A  KT   RVP       L+E
Sbjct: 77  LYTRVDNIAFRLLRNNTPGAYTFIFK--GTKEVPRRLMNAKRKTIGIRVPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G  +       +   +   + LI+ GG   +G + T V    + ++
Sbjct: 135 ALGEPLMSTSLILPGNETTEADPDDIRDKLEHAVDLIMHGGY--LGEQPTTVIDFSDGEI 192

Query: 190 RILRPGGLEI 199
            I+R G  ++
Sbjct: 193 NIVRVGAGDV 202


>gi|186683986|ref|YP_001867182.1| SUA5/yciO/yrdC domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186466438|gb|ACC82239.1| SUA5/yciO/yrdC, N-terminal domain protein [Nostoc punctiforme PCC
           73102]
          Length = 225

 Score = 40.8 bits (94), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 29/195 (14%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---CHVSDISM-VKKHASV 76
           AGL ++ PT+TV  LA     P     ++  K+R    PLI       D+ + VK   + 
Sbjct: 38  AGLLVSFPTDTVPALAAI---PEKAGLIFAAKQRSQDKPLILMAASAEDLWLYVKGSENE 94

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCGFTKKLIETYGHP 134
             +   L    WPG LTLVL     ++  P  ++  +  T   RVP     + I     P
Sbjct: 95  YKVWQELVGKHWPGGLTLVL---PASERLPKVMNPIDPTTIGIRVPNSAIARTILAQTGP 151

Query: 135 LAIPSANRSGQISITNVKHI---------LSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           LA  SAN SGQ  +  +  I         L+++ C+       G  + +G+ ST+     
Sbjct: 152 LATTSANFSGQPPLQTMAEIETQFPQVLTLATTECQ-------GETAAMGIPSTVAK-WT 203

Query: 186 EKKVRILRPGGLEIE 200
               +ILR G ++++
Sbjct: 204 GINWQILRQGAIKLD 218


>gi|262371339|ref|ZP_06064657.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262313676|gb|EEY94725.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 189

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A + L  G  +A PTE V+GL  D  N  A   + +IK+RP    +I     I 
Sbjct: 3  TTSVTEAAQCLKQGQVLAYPTEAVWGLGCDPYNEQAFLDILQIKQRPIEKGVILLAGQI- 61

Query: 69 MVKKHASVDPLSLHL 83
               A V+PL  HL
Sbjct: 62 -----AQVEPLLEHL 71


>gi|16331389|ref|NP_442117.1| hypothetical protein slr0006 [Synechocystis sp. PCC 6803]
 gi|1001560|dbj|BAA10187.1| slr0006 [Synechocystis sp. PCC 6803]
          Length = 217

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 31  TVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHASVDPLSLHLAKLFWP 89
           T Y L V+  +P A+ +L   K+     PL I    D +M    A + P +  L  LF P
Sbjct: 38  TTYVLVVNGASPRAVAQLRAFKQFDKDQPLGILTRGDRAM--DVAKIPPAAKKLMGLF-P 94

Query: 90  GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISIT 149
            P+TL+++ L   D  P  T   +      P  F   L+     PL   +A   G+  +T
Sbjct: 95  LPITLIVEALPKLD--PGITQGFRNIFIACPDAFVFDLVGAMPFPLVCATAKVGGE-PVT 151

Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           + +   S     ++PLI DGG  +     T+++
Sbjct: 152 SFEAA-SRYFEGQVPLIGDGGRCRYARRGTLID 183


>gi|190150467|ref|YP_001968992.1| hypothetical protein APP7_1198 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189915598|gb|ACE61850.1| hypothetical protein APP7_1198 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 204

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 2/145 (1%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I  +   N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI 
Sbjct: 15  IYLVKKMNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL 74

Query: 63  HVSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
                 ++  +   + L+    ++F  P    +   + +   +    T    T   R+ C
Sbjct: 75  IAPTKELLLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCC 134

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQ 145
                 L E  G  L   S N +GQ
Sbjct: 135 IPAVIDLCERTGFALTSTSCNLTGQ 159


>gi|332991534|gb|AEF01589.1| putative double-stranded RNA-binding protein [Alteromonas sp. SN2]
          Length = 191

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PTE V G+  D  N  A+  L  +K+RP    +I   ++ S +  + + + +  H  
Sbjct: 25  LVYPTEAVMGIGCDPDNEEAVLALLALKQRPIEKGVILIAANYSQLLPYINDEAILQHRR 84

Query: 85  KLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
                 WPGP T +L   ++T    L+  + K A         K L E    PL   SAN
Sbjct: 85  TEIVSSWPGPNTWLLPKSASTP-QWLTGKHEKIAVRVSNHPVVKALCEKLEKPLVSTSAN 143

Query: 142 RSGQ---ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            +GQ   I+  +  +I   S+       IDG +      STI +    + +R
Sbjct: 144 LTGQQPAITQQDAINIFGDSV-----FYIDGEVGGHAKPSTIRDGDTGEIIR 190


>gi|71279925|ref|YP_266809.1| putative RNA-binding protein [Colwellia psychrerythraea 34H]
 gi|123634304|sp|Q48AU1|RIMN_COLP3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|71145665|gb|AAZ26138.1| putative RNA-binding protein [Colwellia psychrerythraea 34H]
          Length = 183

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 7/161 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +   E    G  IA PTE V+GL  D  N  A++RL ++K+R     LI      S +  
Sbjct: 4   KNVVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLP 63

Query: 73  H--ASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   S  P    L  L  WP  +T ++      +I  L + +  T   R+        L 
Sbjct: 64  YIDDSKIPQDKRLTLLSRWPDGITQLVP--KNNNISSLLSGSFDTIAVRITSQPDVVALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +    P+   SAN SGQ         L   + K++  I+ G
Sbjct: 122 QQTNKPIVSTSANLSGQ-EPAKTWQSLDLVLSKQVDFILKG 161


>gi|167855223|ref|ZP_02477993.1| hypothetical protein HPS_06619 [Haemophilus parasuis 29755]
 gi|167853676|gb|EDS24920.1| hypothetical protein HPS_06619 [Haemophilus parasuis 29755]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 5/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +      SD+S + 
Sbjct: 17  INQAVEIIKNGGVIVYPTDSGYALGCAIGDKHAMDRIVAIRRLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130
            +A V   S  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  TYALVTNQSYRLIKNNVPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNVIALALISA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   S     +    +    +   +  ++ LII GG   +G   T V    +    
Sbjct: 135 LGEPILSCSLMLPNEAITQSDPDEIREHLEHQVDLIIHGGY--LGQSPTTVIDLTQDSPE 192

Query: 191 ILRPG 195
           I+R G
Sbjct: 193 IIRVG 197


>gi|56751762|ref|YP_172463.1| hypothetical protein syc1753_d [Synechococcus elongatus PCC 6301]
 gi|81301159|ref|YP_401367.1| translation factor SUA5 [Synechococcus elongatus PCC 7942]
 gi|56686721|dbj|BAD79943.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170040|gb|ABB58380.1| translation factor SUA5 [Synechococcus elongatus PCC 7942]
          Length = 233

 Score = 40.4 bits (93), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  I  PT++VY +  D ++  A++R+  IK+     PL      +S+  ++  +
Sbjct: 22  EALRQGAVILYPTDSVYAIGCDVKDRAAVQRVRRIKEIDNDKPLTFICPSLSVAAQYGCI 81

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVP 120
              +  L +   PGP T    LL  T   P    N K  TA  R+P
Sbjct: 82  SDRAFRLMRELVPGPYTF---LLPATPEVPRVVMNPKRRTAGIRIP 124


>gi|325955575|ref|YP_004239235.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922]
 gi|323438193|gb|ADX68657.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922]
          Length = 184

 Score = 40.4 bits (93), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 7/186 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +++  E L  G  +  PT+T+ GL  ++ +  AI ++Y IK RP    LI  V   + +
Sbjct: 2   TIQEIAERLLNGETMIYPTDTILGLGCNALDDKAIAKIYSIKNRPESKSLILLVDSPARL 61

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +    V  L+  L  L    PLT++ D         +S  N  T   R+    F  ++I+
Sbjct: 62  QSIVDVPELTWDLIDLN-EKPLTIIYDDPRGLPKSLVSKDN--TIGIRLTKDPFCCQIIQ 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCEK 187
               PL   S N S Q +  +   I S +I +++  ++D   + +     STI+ +  + 
Sbjct: 119 RIKAPLVSTSVNISSQKAAQSYADI-SPAILEKVDFVVDEAKTFLPKSEPSTIIQLTKDL 177

Query: 188 KVRILR 193
           +V+++R
Sbjct: 178 QVKVIR 183


>gi|291568165|dbj|BAI90437.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 222

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 13/191 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +  PT+TVY +  D    +A++++ +IK+     PL    S +S +  +A V  
Sbjct: 24  LKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIADYAIVTD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTKKLIETYGHPLA 136
            +    K   PG  T VL   +T  +  L  +   KT   RVP       ++E+ G+P+ 
Sbjct: 84  EAYRTIKKLIPGSYTFVLP--ATKQVPKLVMSPKRKTTGIRVPDHPVCLAILESLGNPVI 141

Query: 137 IPSANRSGQ---------ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             SA+   +         I     K  L  ++   + +I+D G       STI+++  + 
Sbjct: 142 STSAHIKEEDEPSALIRKIPQNYDKFQLFDALENLVDIIVDDGADLDYQVSTIIDLSADD 201

Query: 188 KVRILRPGGLE 198
            V + R  G E
Sbjct: 202 PVLVRRGKGWE 212


>gi|30249687|ref|NP_841757.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas europaea ATCC
           19718]
 gi|30180724|emb|CAD85636.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Nitrosomonas europaea ATCC 19718]
          Length = 210

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 39/85 (45%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + +  G  IA PT++ Y L     N  A+ R+  I+K    +       D++ + 
Sbjct: 17  IRQAVDIVRKGGVIAYPTDSCYALGCQIGNKEAMDRIRTIRKVDQNHNFTLVCRDLAEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL 96
            +A VD     L K   PG  T +L
Sbjct: 77  TYAKVDNAQYRLLKAATPGSYTFIL 101


>gi|255319592|ref|ZP_05360804.1| Sua5/YciO/YrdC family protein [Acinetobacter radioresistens SK82]
 gi|262380778|ref|ZP_06073931.1| yrdC [Acinetobacter radioresistens SH164]
 gi|255303347|gb|EET82552.1| Sua5/YciO/YrdC family protein [Acinetobacter radioresistens SK82]
 gi|262297726|gb|EEY85642.1| yrdC [Acinetobacter radioresistens SH164]
          Length = 189

 Score = 40.4 bits (93), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          + ++ +A E L  G  +A PTE V+GL  D  N  A   +  +K+RP    +I     +S
Sbjct: 3  TTSVTEAAECLSQGKVLAYPTEAVWGLGCDPYNEAAFHEILRLKQRPIEKGVILLAGQLS 62

Query: 69 MVK 71
           V+
Sbjct: 63 QVE 65


>gi|238899277|ref|YP_002924960.1| putative translation factor, yrdC domain protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467038|gb|ACQ68812.1| putative translation factor, yrdC domain protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 12/165 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y L       +A  R+ +I++R + +       D+S + 
Sbjct: 17  INQSIDLLKKGSVMVYPTDSGYALGCLLEKKSAQERICQIRERTSDHHFTLVCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A +D  +  L K   PG  T +L   +T ++   L     KT   RVP       L++
Sbjct: 77  LYAYLDNSAFRLIKNNTPGRYTFILK--ATKEVPRRLMNEKRKTIGLRVPSNDIALALLD 134

Query: 130 TYGHPLA----IPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
               PL     I   +   Q     +K  L     K++ LIIDGG
Sbjct: 135 ALNEPLMSTTLILPGDDFAQFDPEQIKQKLG----KKVDLIIDGG 175


>gi|329119555|ref|ZP_08248239.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464342|gb|EGF10643.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 206

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 11/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+  + +  G   A PT++ Y L     +  A+ R+  I+K    + L    +D++ + 
Sbjct: 17  IRQVAQIVRGGGVAAYPTDSCYALGCRLGDKEAMERILRIRKIDLKHHLTLMCADLAELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +A VD     + K   PG  T +L     +    +HP      KT   RVP       L
Sbjct: 77  TYAKVDNAQFRMLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNAVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +          +  + +   +   + L+IDGG    G E T V V    
Sbjct: 133 LRELGEPLLSCTLMLPEDSEPLSDPYEIRDRLEHAVDLVIDGGWC--GTEPTTV-VDMTD 189

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 190 GVTLVREG 197


>gi|225077323|ref|ZP_03720522.1| hypothetical protein NEIFLAOT_02382 [Neisseria flavescens
           NRL30031/H210]
 gi|224951315|gb|EEG32524.1| hypothetical protein NEIFLAOT_02382 [Neisseria flavescens
           NRL30031/H210]
          Length = 190

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 13/196 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  + A R+    L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 2   MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCVPTLSKALNQLIHLKKRPQHKGM 61

Query: 61  ICHVSDIS----MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTA 115
           I     +     ++++ +      LH A   WP P T +L   +   + P L        
Sbjct: 62  IVIGHSLEQLQPLLQRPSENIQTMLHEA---WPAPKTFLLS--AGKKVLPSLRGKGRSKL 116

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             RVP     ++L +    PL   S NR+G+ +    + +      +++  ++ G I K 
Sbjct: 117 AVRVPAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREV-RRQFGRKV-WVVGGLIGKQ 174

Query: 175 GLESTIVNVQCEKKVR 190
              S I++ +   ++R
Sbjct: 175 KTPSQIIDGETGVRLR 190


>gi|254523713|ref|ZP_05135768.1| Sua5/YciO/YrdC family protein [Stenotrophomonas sp. SKA14]
 gi|219721304|gb|EED39829.1| Sua5/YciO/YrdC family protein [Stenotrophomonas sp. SKA14]
          Length = 169

 Score = 40.4 bits (93), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD--PLSLH 82
           IA PTE V+GL  D  +  A+  +  +K+RP    +I   +++  ++    +   P +  
Sbjct: 2   IAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAAELPQLEGWVRLQALPDARQ 61

Query: 83  LAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            A L  WPG  T +L   +     P  T        R+        L   +G PL   SA
Sbjct: 62  RAVLASWPGANTWILP--AGPRAQPWVTGEHSGIAVRISAHPLVAALCRAWGGPLVSTSA 119

Query: 141 NRSGQ 145
           N +G+
Sbjct: 120 NLAGE 124


>gi|301169373|emb|CBW28973.1| predicted ribosome maturation factor [Haemophilus influenzae 10810]
          Length = 183

 Score = 40.4 bits (93), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT--KKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT      T    +   R+ C  +  K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTSY--FLTGKFDSIAVRL-CDHSSVKALCELVGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|152994766|ref|YP_001339601.1| SUA5/yciO/yrdC domain-containing protein [Marinomonas sp. MWYL1]
 gi|212288210|sp|A6VT87|RIMN_MARMS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis
          protein RimN; AltName: Full=t(6)A37
          threonylcarbamoyladenosine biosynthesis protein RimN
 gi|150835690|gb|ABR69666.1| SUA5/yciO/yrdC domain [Marinomonas sp. MWYL1]
          Length = 185

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ +  + +  G  IA PTE V+GL  D  N +A+RR+  +K RP    LI
Sbjct: 5  TSVEELADIIRQGGVIAYPTEAVWGLGCDPFNESAVRRILTLKSRPESKGLI 56


>gi|145642211|ref|ZP_01797778.1| predicted translation factor SUA5 [Haemophilus influenzae R3021]
 gi|145273071|gb|EDK12950.1| predicted translation factor SUA5 [Haemophilus influenzae 22.4-21]
          Length = 183

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTS-HFL-TGKFDSIAVRL-CDHPSVKALCELTGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|229587599|ref|YP_002869718.1| hypothetical protein PFLU0021 [Pseudomonas fluorescens SBW25]
 gi|229359465|emb|CAY46306.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 185

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    +I          P  
Sbjct: 16  AGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVADNIRQFDFLFEDFPQD 75

Query: 81  L--HLAKLFWPGPLTLVL---DLL--STTDIHPLSTANLKT-ACFRVPCGFTKKLIETYG 132
               +A   WPGP T ++    LL    T +H      +      R  C     LI T  
Sbjct: 76  WIDRMAST-WPGPNTWLVPHQGLLPEWVTGVHDTVAVRVTDHPLVRDLCSLVGPLISTSA 134

Query: 133 HPLAIPSA 140
           +P   P+A
Sbjct: 135 NPQGRPAA 142


>gi|113460156|ref|YP_718212.1| Sua5 family translation factor [Haemophilus somnus 129PT]
 gi|112822199|gb|ABI24288.1| possible translation factor, Sua5 family [Haemophilus somnus 129PT]
          Length = 192

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           +A PTE V+GL  +  + +A+ +L  +K+RP    LI     +         + + S H 
Sbjct: 25  VAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFFSFIDKEQINSQHW 84

Query: 84  AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138
            KL   +P P+T ++   +  DI      N  +   RV   P    K L E  G  L   
Sbjct: 85  QKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPA--IKILCEQTGFALTST 140

Query: 139 SANRSG 144
           SAN SG
Sbjct: 141 SANLSG 146


>gi|213865416|ref|ZP_03387535.1| putative ribosome maturation factor [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 58

 Score = 40.4 bits (93), Expect = 0.42,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%)

Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
          A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI
Sbjct: 1  AIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLI 51


>gi|206900558|ref|YP_002251596.1| [NiFe] hydrogenase maturation protein HypF [Dictyoglomus
           thermophilum H-6-12]
 gi|206739661|gb|ACI18719.1| [NiFe] hydrogenase maturation protein HypF [Dictyoglomus
           thermophilum H-6-12]
          Length = 742

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +  ++  E+LD G  +AI     + LA D+     +R+L E KKRP+  P    + DI 
Sbjct: 193 KDLFKRISEYLDEGKILAIKGIGGFHLACDATQDDTVRKLRERKKRPS-KPFALMMKDIE 251

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            +K++  V      + K     P+ L L +    DI PL           +P      LI
Sbjct: 252 TIKEYCFVSEEEEKILKS-KQSPIVL-LRIKDLKDISPLVAPGNNYLGVMLPYAPYHHLI 309

Query: 129 -ETYGHPLAIPSANRSGQ 145
            + +  PL + S N S +
Sbjct: 310 FDHFKKPLIMTSGNLSDE 327


>gi|260583205|ref|ZP_05850984.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae NT127]
 gi|260093762|gb|EEW77671.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae NT127]
          Length = 183

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT--KKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT      T    +   R+ C  +  K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTSY--FLTGKFDSIAVRL-CDHSSVKALCELVGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|17227612|ref|NP_484160.1| hypothetical protein alr0116 [Nostoc sp. PCC 7120]
 gi|17135094|dbj|BAB77640.1| alr0116 [Nostoc sp. PCC 7120]
          Length = 194

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 15/189 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI---CHVSDIS-MVKKHA 74
           + AG  ++ PT+TV  LA     P     ++  K+R    PLI       D+   V+   
Sbjct: 13  VGAGGLVSFPTDTVPALAT---LPEQAELIFAAKQRSQDKPLILMGASAEDLWPYVEGRE 69

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
               +   +   +WPG LTLV+   S      ++  +  T   RVP     + I +   P
Sbjct: 70  QDKQIWEQVVSQYWPGALTLVVPA-SKRVPEVMNPIDPTTIGIRVPKSAIAQKILSQTGP 128

Query: 135 LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           LA  SAN SGQ ++  +  I     + +  E   +   G   IGL ST+     E   +I
Sbjct: 129 LATTSANFSGQPALLTMAEIDAQFPTVLTLESTAVEAEG---IGLPSTVAKWTGENW-QI 184

Query: 192 LRPGGLEIE 200
           LR G + +E
Sbjct: 185 LRQGAVSLE 193


>gi|212288271|sp|Q0I1B6|RIMN_HAES1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 183

 Score = 40.0 bits (92), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           +A PTE V+GL  +  + +A+ +L  +K+RP    LI     +         + + S H 
Sbjct: 16  VAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFFSFIDKEQINSQHW 75

Query: 84  AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138
            KL   +P P+T ++   +  DI      N  +   RV   P    K L E  G  L   
Sbjct: 76  QKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPA--IKILCEQTGFALTST 131

Query: 139 SANRSG 144
           SAN SG
Sbjct: 132 SANLSG 137


>gi|303327758|ref|ZP_07358198.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862119|gb|EFL85053.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 82

 Score = 40.0 bits (92), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
          L  A   L  G  +  PTET YGL   + +  A+ R+Y++K+RP   PL
Sbjct: 11 LEAAARCLRRGGVVIFPTETFYGLGCLAADAAAVGRIYQLKRRPVQRPL 59


>gi|326796760|ref|YP_004314580.1| ribosome maturation factor rimN [Marinomonas mediterranea MMB-1]
 gi|326547524|gb|ADZ92744.1| ribosome maturation factor rimN [Marinomonas mediterranea MMB-1]
          Length = 185

 Score = 40.0 bits (92), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
          ++++ +  + +  G  +A PTE V+GL  D  N  A+RR+  +K RP    LI    D
Sbjct: 4  TSSIAEITDIIRQGGVVAYPTEAVWGLGCDPYNELAVRRILALKSRPEEKGLILITGD 61


>gi|330889220|gb|EGH21881.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. mori str. 301020]
          Length = 141

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 41/86 (47%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S + 
Sbjct: 30  IKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLSQLG 89

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD 97
             A VD  +    K   PGP T +L+
Sbjct: 90  LFAKVDTGAFRALKAHTPGPYTFILN 115


>gi|229847438|ref|ZP_04467538.1| hypothetical protein CGSHi7P49H1_08654 [Haemophilus influenzae
           7P49H1]
 gi|229809676|gb|EEP45402.1| hypothetical protein CGSHi7P49H1_08654 [Haemophilus influenzae
           7P49H1]
          Length = 183

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|206602460|gb|EDZ38941.1| Putative translation factor (SUA5) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 204

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 21/162 (12%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLST 101
           RRL+ IK R    P++     +S+V + A + P ++    H+++  WP   TLVL     
Sbjct: 54  RRLFSIKARSPGKPILYLAGSLSIVARFARL-PATVRCRRHVSR--WPNFRTLVLP-ARP 109

Query: 102 TDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSIC 160
             +H L  ++     FR+P   + +L   + G PL+  S N SG   + + +      IC
Sbjct: 110 LAVH-LGMSHNGGVAFRIPEERSLRLFLNFLGTPLSGTSLNLSGCPPLRSPEE-----IC 163

Query: 161 KEIPL---IIDGGISKIGLESTIVNV-QCEKKVRILRPGGLE 198
           +  P    +++ G+   G  S +++V +C +  R++RPG L+
Sbjct: 164 RAFPFLDGVVEAGVLPGGPPSPVIDVTKCPE--RVVRPGVLK 203


>gi|119898405|ref|YP_933618.1| hypothetical protein azo2114 [Azoarcus sp. BH72]
 gi|119670818|emb|CAL94731.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 210

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  +A PT++ Y L   + +   + R+  I+     +       D+S + 
Sbjct: 17  IRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVDERHQFTLLCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTANLKTACFRVP 120
            +A VD     L K   PG  T +L+    L    +HP      KT   R+P
Sbjct: 77  TYARVDNSQYRLLKAVTPGAYTFILEGTRELPRRVLHP----KRKTIGLRIP 124


>gi|170718186|ref|YP_001785212.1| SUA5/yciO/yrdC domain-containing protein [Haemophilus somnus 2336]
 gi|212288206|sp|B0UWV9|RIMN_HAES2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|168826315|gb|ACA31686.1| SUA5/yciO/yrdC domain [Haemophilus somnus 2336]
          Length = 183

 Score = 40.0 bits (92), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           +A PTE V+GL  +  + +A+ +L  +K+RP    LI     +         + + S H 
Sbjct: 16  VAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFFSFIDKEQINSQHW 75

Query: 84  AKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIP 138
            KL   +P P+T ++   +  DI      N  +   RV   P    K L E  G  L   
Sbjct: 76  QKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPA--IKILCEQTGFALTST 131

Query: 139 SANRSG 144
           SAN SG
Sbjct: 132 SANLSG 137


>gi|307257194|ref|ZP_07538966.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864356|gb|EFM96267.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 184

 Score = 40.0 bits (92), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 2/138 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 2   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61

Query: 70  VKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +  +   + L S H      P    +   + +   +    T    T   R+ C      L
Sbjct: 62  LLPYIDENKLTSAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDL 121

Query: 128 IETYGHPLAIPSANRSGQ 145
            E  G  L   S N +GQ
Sbjct: 122 CERTGFALTSTSCNLTGQ 139


>gi|209694705|ref|YP_002262633.1| hypothetical protein VSAL_I1156 [Aliivibrio salmonicida LFI1238]
 gi|208008656|emb|CAQ78841.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 206

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 7/178 (3%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D G+ I  PT++ Y L     N  A+ R+ +I++    +       D+S +  +A VD  
Sbjct: 26  DGGV-IIYPTDSGYALGCQIENKQALERICQIRRLDDKHNFTLVCRDLSELSIYARVDNT 84

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
              L K   PG  T +     T ++   L     KT   RVP       L+E  G PL  
Sbjct: 85  MFRLLKNNTPGAYTFIFK--GTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMS 142

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            +    G          +   +   + LI++GG   +G + T V    +  ++I R G
Sbjct: 143 TTLILPGNEMAEADPEAIRDQLEHAVDLIMNGGY--LGEQPTTVIDFSDDDIKIARVG 198


>gi|312111044|ref|YP_003989360.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp.
           Y4.1MC1]
 gi|311216145|gb|ADP74749.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp.
           Y4.1MC1]
          Length = 753

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ K  E L  G  +AI     Y LA D+ N  A+R L + K+R A  P    V DI
Sbjct: 199 DEKAIEKTAELLRTGRIVAIKGLGGYHLACDAENEEAVRELRKRKRRSA-KPFALMVKDI 257

Query: 68  SMVKK 72
              KK
Sbjct: 258 ETAKK 262


>gi|307130977|ref|YP_003882993.1| putative RNA-binding protein [Dickeya dadantii 3937]
 gi|306528506|gb|ADM98436.1| predicted RNA-binding protein [Dickeya dadantii 3937]
          Length = 206

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L  G  I  PT++ Y L     +  A+ R+  I+     +       D+S + 
Sbjct: 17  INQTVEILHKGGVIVYPTDSGYALGCMLEDKAAMERICRIRDLDQNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP      +L+ 
Sbjct: 77  SYAYVDNAAFRLMKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGMRVPSNPIALELLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   +    G     +    +   + K + L+I GG   +G + T V    E   
Sbjct: 135 ALNEPLMSTTLMLPGNDFAESDPEEIQEQLGKRVDLVIHGGF--LGQQPTTVIDLTESVP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 VVVREG 198


>gi|156933738|ref|YP_001437654.1| hypothetical protein ESA_01564 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531992|gb|ABU76818.1| hypothetical protein ESA_01564 [Cronobacter sakazakii ATCC BAA-894]
          Length = 183

 Score = 40.0 bits (92), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 6/173 (3%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I  PT++ Y L     +  A+ R+  I+  P  +       D+S +  ++ VD ++  L 
Sbjct: 7   IVYPTDSGYALGCKLEDKGAMERICRIRDLPDGHNFTLMCRDLSELSTYSYVDNVAFRLI 66

Query: 85  KLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           K   PG  T +L    T ++   L     KT   RVP       L+E    P+   S   
Sbjct: 67  KNNTPGNYTFILK--GTKEVPRRLLQEKRKTIGLRVPSNPIALALLEALDEPMLSTSLML 124

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            G     +    +   + K++ LII GG   +G + T V    +    +LR G
Sbjct: 125 PGSEFTESDPDEIKDRLEKQVDLIIHGGY--LGQQPTTVIDLTDDAPVVLREG 175


>gi|295400430|ref|ZP_06810409.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977705|gb|EFG53304.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 753

 Score = 40.0 bits (92), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ K  E L  G  +AI     Y LA D+ N  A+R L + K+R A  P    V DI
Sbjct: 199 DEKAIEKTAELLRTGRIVAIKGLGGYHLACDAENEEAVRELRKRKRRSA-KPFALMVKDI 257

Query: 68  SMVKK 72
              KK
Sbjct: 258 ETAKK 262


>gi|255067572|ref|ZP_05319427.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sicca ATCC 29256]
 gi|255048193|gb|EET43657.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sicca ATCC 29256]
          Length = 206

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 11/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  I  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRSGGVIVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP       L
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNTIALSL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +             + +   +   + L+IDGG    G E T V +    
Sbjct: 133 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHSVDLVIDGGWC--GTEPTTV-IDMTD 189

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 190 GTELIRQG 197


>gi|328675606|gb|AEB28281.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida 3523]
          Length = 204

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 6/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D+S + 
Sbjct: 17  LKELANILDNDGVIAIPTDSGYALACSMKSKKGIDKIIKIRNLDSSHNFTLCCKDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIET 130
           ++A VD  +  L K + PG  T +L   +T  +   L T +  T   RV   +  K I  
Sbjct: 77  EYAKVDNNAYRLLKRYTPGSYTFILK--ATKKVSSLLVTKSKNTVGIRVSEHYVPKAISA 134

Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL + S    G   +      + + I   I  +++      G + T V    E   
Sbjct: 135 EIGEPLVVSSFIIPGHQHVVTDCADVDNQIMNYIDAVVESDYC--GYDPTTVVELLELPY 192

Query: 190 RILRPGGLEIE 200
           +ILR G  EI+
Sbjct: 193 QILRQGAGEID 203


>gi|307246055|ref|ZP_07528137.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307250396|ref|ZP_07532343.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252778|ref|ZP_07534669.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255037|ref|ZP_07536855.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259473|ref|ZP_07541198.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307263811|ref|ZP_07545417.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306852990|gb|EFM85213.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306857525|gb|EFM89634.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859810|gb|EFM91832.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861910|gb|EFM93886.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866409|gb|EFM98272.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306870932|gb|EFN02670.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 2/138 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 5   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 64

Query: 70  VKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +  +   + L+    ++F  P    +   + +   +    T    T   R+ C      L
Sbjct: 65  LLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDL 124

Query: 128 IETYGHPLAIPSANRSGQ 145
            E  G  L   S N +GQ
Sbjct: 125 CERTGFALTSTSCNLTGQ 142


>gi|167561725|ref|ZP_02354641.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           EO147]
          Length = 144

 Score = 40.0 bits (92), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 20/120 (16%)

Query: 216 ETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275
           + + P++ G LK+HYAPR+ + L      P E L R  +      E   +    S+ G  
Sbjct: 24  DATAPRASGTLKAHYAPRTPLAL-----APFERLERLLSAARDAGERIALVARASRAGAW 78

Query: 276 KEA---------------AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                             A  L+  ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 79  AHTDGVHFVAAPEDPLVYARELYGLLRALDRAQVARILVEKLPDTAEWIAVNDRLGRAAA 138


>gi|226953462|ref|ZP_03823926.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244]
 gi|226835804|gb|EEH68187.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244]
          Length = 205

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + + AG  +  PT+  Y +     N +A+ R+ +I+     +       D+S + 
Sbjct: 16  ITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLSDIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD     L K   P   T +L   S      +HP      KT   R+P     + L
Sbjct: 76  TYAKVDNAMYRLLKNNTPAVTTFILPATSEVPKRLMHP----KKKTIGLRIPSNPVAQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +     Q    +  + + + + K I + ID G   +   S IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPDQKDPLDDPYDIENQLGKRIDVFIDSGFGTLSTTS-IVDLSGEN 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIIRRG 197


>gi|165976566|ref|YP_001652159.1| hypothetical protein APJL_1159 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250111|ref|ZP_07336313.1| hypothetical protein APP6_1523 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253285|ref|ZP_07339434.1| hypothetical protein APP2_0592 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248163|ref|ZP_07530191.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|212277663|sp|B0BQ80|RIMN_ACTPJ RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277727|sp|B3GY27|RIMN_ACTP7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|165876667|gb|ABY69715.1| hypothetical protein APJL_1159 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302647967|gb|EFL78174.1| hypothetical protein APP2_0592 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651174|gb|EFL81328.1| hypothetical protein APP6_1523 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306855340|gb|EFM87515.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 184

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 2/138 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 2   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61

Query: 70  VKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +  +   + L+    ++F  P    +   + +   +    T    T   R+ C      L
Sbjct: 62  LLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDL 121

Query: 128 IETYGHPLAIPSANRSGQ 145
            E  G  L   S N +GQ
Sbjct: 122 CERTGFALTSTSCNLTGQ 139


>gi|253998091|ref|YP_003050154.1| SUA5/yciO/yrdC domain-containing protein [Methylovorus sp.
          SIP3-4]
 gi|313200156|ref|YP_004038814.1| sua5/ycio/yrdc domain-containing protein [Methylovorus sp. MP688]
 gi|253984770|gb|ACT49627.1| SUA5/yciO/yrdC domain protein [Methylovorus sp. SIP3-4]
 gi|312439472|gb|ADQ83578.1| SUA5/yciO/yrdC domain protein [Methylovorus sp. MP688]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
          R+   +L  G  IA PTE+ +GL  D  +   ++R+  +K RP    LI      +  K+
Sbjct: 5  RELRHYLRHGGVIAYPTESCFGLGCDPHSRLGVQRILRLKGRPQRKGLILIGDQQTRFKR 64

Query: 73 H-ASVDPLSLHLAKLFWPGPLTLVL 96
            A + P         WPGP T ++
Sbjct: 65 LIAPLSPEQQARVATTWPGPHTWLV 89


>gi|219872045|ref|YP_002476420.1| putative translation factor (SUA5) [Haemophilus parasuis SH0165]
 gi|219692249|gb|ACL33472.1| putative translation factor (SUA5) [Haemophilus parasuis SH0165]
          Length = 206

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +      SD+S + 
Sbjct: 17  INQAVEIIKNGGVIVYPTDSGYALGCAIGDKHAMDRIVAIRRLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130
            +A V   S  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  TYALVTNQSYRLIKNNVPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNVIALALISA 134

Query: 131 YGHPL 135
            G P+
Sbjct: 135 LGEPI 139


>gi|157961471|ref|YP_001501505.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella pealeana ATCC
           700345]
 gi|157846471|gb|ABV86970.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella pealeana ATCC
           700345]
          Length = 206

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 6/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  I  PT++ Y L     +  A+ ++  I++    +       D S + 
Sbjct: 17  ISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQIDNDHNFSLMCRDQSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130
            +A VD  +  L K   PGP T +  + S      L     KT   RVP       L+E 
Sbjct: 77  TYARVDNQAYRLLKQNTPGPYTFIF-MASKEVPKRLQNPKKKTIGIRVPDNVIALALLEA 135

Query: 131 YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            G PL   S    G + + ++ +HI    +  ++ LII GG   +G + T V    + ++
Sbjct: 136 LGEPLMSTSLILPGKEFTESDPEHI-RDILEHQVDLIIHGGY--LGEKPTTVIDLSDGEI 192

Query: 190 RILRPGGLEI 199
            ++R G  ++
Sbjct: 193 EVIREGAGDV 202


>gi|145631687|ref|ZP_01787450.1| hypothetical protein CGSHi22421_05142 [Haemophilus influenzae
           R3021]
 gi|144982710|gb|EDJ90246.1| hypothetical protein CGSHi22421_05142 [Haemophilus influenzae
           R3021]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|59711642|ref|YP_204418.1| hypothetical protein VF_1035 [Vibrio fischeri ES114]
 gi|59479743|gb|AAW85530.1| conserved protein [Vibrio fischeri ES114]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  INQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD     L K   PG  T +     T ++   L     KT   RVP       L+E
Sbjct: 77  IYARVDNSIFRLLKNNTPGAYTFIFK--GTKEVPRRLMNPKRKTIGMRVPDNKIALDLLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G     +    +   +   + LI++GG   +G + T V    +  +
Sbjct: 135 ALGEPLMSTTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGY--LGEQPTTVIDFSDDDI 192

Query: 190 RILRPG 195
           +I R G
Sbjct: 193 KIARVG 198


>gi|332534849|ref|ZP_08410672.1| YciO family protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035709|gb|EGI72197.1| YciO family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  +  PT++ Y +  +  N  A  R+  I+     +       D+S + 
Sbjct: 17  ISQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKNDNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRV-----PCGFTK 125
            +A VD     L K   PGP T +     T ++   L     KT   RV      C    
Sbjct: 77  TYARVDNQLFRLIKNNTPGPYTFIFK--GTKEVPKRLLNDKKKTIGMRVIEHPIACALLA 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L    G PL   S    GQ    +    +   + K + LII GG   +  ++T V    
Sbjct: 135 EL----GEPLMSCSLILPGQQFTESDPDEILERLDKHVDLIIHGG--HLAEQATTVIDLS 188

Query: 186 EKKVRILRPG 195
           E +V+ILR G
Sbjct: 189 EDEVKILRVG 198


>gi|145633852|ref|ZP_01789574.1| trigger factor [Haemophilus influenzae 3655]
 gi|144985294|gb|EDJ92133.1| trigger factor [Haemophilus influenzae 3655]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +   + + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVNFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|145635688|ref|ZP_01791384.1| hypothetical protein CGSHiAA_01574 [Haemophilus influenzae PittAA]
 gi|145267083|gb|EDK07091.1| hypothetical protein CGSHiAA_01574 [Haemophilus influenzae PittAA]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|307250416|ref|ZP_07532363.1| hypothetical protein appser4_11970 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857545|gb|EFM89654.1| hypothetical protein appser4_11970 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 205

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 15/194 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L        A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V   S  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALALIAA 134

Query: 131 YGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            G P     L +P      +I+ ++   I    +   + LII GG   +G E T V    
Sbjct: 135 LGEPILSCSLMLPDT----EITESDPDEI-REHLEHRVDLIIHGGY--LGQEPTTVIDLT 187

Query: 186 EKKVRILRPGGLEI 199
           E   +I+R G  +I
Sbjct: 188 EDAPKIIREGSGDI 201


>gi|261866941|ref|YP_003254863.1| protein YrdC [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412273|gb|ACX81644.1| protein YrdC [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  +  + +A+  L  +K+RP    LI   + +  +       PL+ LH 
Sbjct: 16  VAYPTEAVFGLGCNPNSQSAVENLLVLKQRPVSKGLILIATALDFLLPFIDERPLAELHW 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSA 140
            +L   +  P T V+    TT      T +  +   R+      KL+ E  G  L   SA
Sbjct: 76  QRLTAQYARPTTWVVPAKKTTP--KFLTGDFDSIAVRISQHPAVKLLCEQAGFALTSTSA 133

Query: 141 NRSGQ 145
           N SGQ
Sbjct: 134 NLSGQ 138


>gi|289677573|ref|ZP_06498463.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae
          FF5]
          Length = 55

 Score = 39.7 bits (91), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 12 LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
          +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP
Sbjct: 7  VQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRP 50


>gi|222874698|gb|EEF11829.1| predicted protein [Populus trichocarpa]
          Length = 302

 Score = 39.7 bits (91), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S
Sbjct: 148 SRLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVKIRQLPEGHNFTLVCSDLS 207

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTK 125
            +  ++ V+     L K   PG  T +   LS T   P  L T+  KT   RVP      
Sbjct: 208 ELSTYSVVNNSVYRLIKNNTPGRYTFI---LSATKELPRRLMTSKRKTIGIRVPDNQIAL 264

Query: 126 KLIETYGHPL 135
            L+++ G P+
Sbjct: 265 DLLKSLGEPI 274


>gi|197335779|ref|YP_002155838.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio fischeri MJ11]
 gi|121308593|dbj|BAF43688.1| hypothetical protein [Vibrio fischeri]
 gi|197317269|gb|ACH66716.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio fischeri MJ11]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 7/178 (3%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D G+ +  PT++ Y L     N  A+ R+ +I++    +       D+S +  +A VD  
Sbjct: 26  DGGV-VIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELSIYARVDNS 84

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
              L K   PG  T +     T ++   L     KT   RVP       L+E  G PL  
Sbjct: 85  IFRLLKNNTPGAYTFIFK--GTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMS 142

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            +    G     +    +   +   + LI++GG   +G + T V    +  ++I R G
Sbjct: 143 TTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGY--LGEQPTTVIDFSDDDIKIARVG 198


>gi|54309647|ref|YP_130667.1| putative translation factor [Photobacterium profundum SS9]
 gi|46914085|emb|CAG20865.1| putative translation factor [Photobacterium profundum SS9]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 6/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  MTQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD  +  L +   PG  T +     T ++   L +   KT   R+P       L+E
Sbjct: 77  NYARVDNAAFRLLRSNTPGAYTFIFK--GTKEVPRRLMSPKRKTIGIRIPNNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S          +    +   +   + LI++GG   +G + T V      ++
Sbjct: 135 ELGEPLMSTSLILPNSDVAESDPEDIRDKLEHAVDLIMNGGY--LGEQPTTVIDFSNDEM 192

Query: 190 RILRPGG 196
            +LR G 
Sbjct: 193 EVLRVGA 199


>gi|331007630|ref|ZP_08330772.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC1989]
 gi|330418570|gb|EGG93094.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC1989]
          Length = 189

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK--- 71
           A   +  G  IA PTE V+GL     N  A+ R+  +K+R     LI   S I+  +   
Sbjct: 13  AARIMRQGGVIAYPTEAVWGLGCLPDNKDAVHRILSLKQRHVSKGLILVASSIAQFEPYL 72

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +H +V+       +  WPGP T ++   +T  +    +    +   RV      + L   
Sbjct: 73  RHITVE--QRKTLENSWPGPFTWLVPHHNT--VPSWVSGKHSSIALRVSNHPHVRYLCNA 128

Query: 131 YGHPLAIPSANRSGQIS---ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            G P+   SAN  G+ +      VK         E+  I+ G + +    STI ++
Sbjct: 129 VGGPIVSTSANPQGKPAPKQTWQVKRYFKHQ--PELDWIVSGCVGQRAEPSTITDL 182


>gi|297571292|ref|YP_003697066.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931639|gb|ADH92447.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 208

 Score = 39.7 bits (91), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVK 71
           K  + L  G  IA+PT++ Y +     N   + R+  I++    +   L+CH  D + + 
Sbjct: 19  KVVDRLRRGEVIAMPTDSGYAICCMMANKDGLERIRRIRQVGDKHHFTLLCH--DFAQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC-GFTKKLI 128
           +   VD     L K   PGP T +L    T ++ P  T N K  T   R+P    T+ ++
Sbjct: 77  QLVIVDNAVFRLVKSLTPGPYTFILK--GTKEV-PRMTLNPKKATVGVRIPDHKITQAIV 133

Query: 129 ETYGHPL 135
            T G PL
Sbjct: 134 NTLGEPL 140


>gi|291059589|gb|ADD72324.1| putative YrdC domain protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 212

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 32/201 (15%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN---------PLICHVSDISMVKKHAS 75
           +A+PT+TVYG +     P A+  L  +K R             P I  ++D   V  +  
Sbjct: 24  VALPTDTVYGFS--GLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYTG 81

Query: 76  VD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
              P      +  WPGP T VL +            +  T  FR P   + + +I   G 
Sbjct: 82  TRLPAEF---RALWPGPYTFVLRM-----------QDGATQAFRCPADLWLRSVIRAVGG 127

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +   SANR G+  + + + I      K + L +D G    G  S ++++      R+LR
Sbjct: 128 AIFSTSANRHGEPPLQDAQDI-DHIFGKHLALTVDAG-PLTGSPSAVIDLT-HPVPRVLR 184

Query: 194 PGG--LEIETLKRAISVELEY 212
            G   L +  L+R  S  L +
Sbjct: 185 AGAAPLPLAGLERRDSPSLPH 205


>gi|224417916|ref|ZP_03655922.1| Hydrogenase maturation protein HypF [Helicobacter canadensis MIT
           98-5491]
 gi|313141457|ref|ZP_07803650.1| hydrogenase maturation protein HypF [Helicobacter canadensis MIT
           98-5491]
 gi|313130488|gb|EFR48105.1| hydrogenase maturation protein HypF [Helicobacter canadensis MIT
           98-5491]
          Length = 770

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 38/207 (18%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A + L  G  +A+     Y L  D+ N  +I+ L E K RP   P      +I M K
Sbjct: 216 IKSALKALKEGKILALKGIGGYALICDATNANSIKALRERKNRPK-KPFALMCKNIQMAK 274

Query: 72  KHA------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFR 118
            +A            S+ P+ L  +K     PL+L+   LST   I P S          
Sbjct: 275 NYAYLNSQAIAMLNSSISPIVLSYSKTKANLPLSLIAPNLSTLGIILPYS---------- 324

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
              G    L  +   PL   SAN SG+  I +       S+ +++  + DG +S      
Sbjct: 325 ---GLHHLLFHSIDFPLVFTSANISGEPIIKDC-----YSVIQKLQNVCDGILS---YNR 373

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRA 205
            I+N   +  VRIL   G + + L+RA
Sbjct: 374 DILNPIDDSLVRIL---GKKTQVLRRA 397


>gi|126208610|ref|YP_001053835.1| hypothetical protein APL_1140 [Actinobacillus pleuropneumoniae L20]
 gi|212277671|sp|A3N1E4|RIMN_ACTP2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|126097402|gb|ABN74230.1| hypothetical protein APL_1140 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 184

 Score = 39.7 bits (91), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 2/138 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 2   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61

Query: 70  VKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +  +   + L+    ++F  P    +   + +   +    T    T   R+ C      L
Sbjct: 62  LLPYIDENKLTAAHWQIFETPSERAITWVMPAKKAVPQYLTGQFDTIAVRLCCIPAVIDL 121

Query: 128 IETYGHPLAIPSANRSGQ 145
            E  G  L   S N +GQ
Sbjct: 122 CERTGFALTSTSCNLTGQ 139


>gi|294670991|ref|ZP_06735847.1| hypothetical protein NEIELOOT_02697 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307478|gb|EFE48721.1| hypothetical protein NEIELOOT_02697 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 10/174 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  IA PT++ Y L     +  A+ R+  I++    + L    +D+  + 
Sbjct: 17  IKQAAEIVRNGGVIAYPTDSCYALGCRLGDKEAMERILRIRQIDLKHHLTLMCADLGELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP       L
Sbjct: 77  TYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNKIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           +   G PL   +          +  + +   +   + L+IDGG    G+E T V
Sbjct: 133 LNELGEPLLSCTLMLPEDGEPLSDPYEIRDRLEHSVDLVIDGGWC--GMEPTTV 184


>gi|269138888|ref|YP_003295589.1| hypothetical protein ETAE_1537 [Edwardsiella tarda EIB202]
 gi|267984549|gb|ACY84378.1| hypothetical protein ETAE_1537 [Edwardsiella tarda EIB202]
 gi|304558874|gb|ADM41538.1| hypothetical protein ETAF_1426 [Edwardsiella tarda FL6-60]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 4/171 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L  G  I  PT++ Y L        A+ R+  I++  + +       D+S + 
Sbjct: 17  IKQVVEVLHKGGVIVYPTDSGYALGCMLEEKNAMERICRIRRIDSNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A VD  +  L K   PG  T +L   S      L +   KT   RVP     + L+  
Sbjct: 77  SYAFVDNAAFRLLKNNTPGGYTFILK-ASKEVPRRLMSEKRKTIGLRVPSNPIAQDLLAE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            G PL   +          +    +   + K++ L+I GG   +G + T V
Sbjct: 136 LGEPLMSTTLMLPDSEFAESDPEEIQERLGKQVDLVIHGGY--LGQQPTTV 184


>gi|253574246|ref|ZP_04851588.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846723|gb|EES74729.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 80

 Score = 39.7 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +L+L +  +L+ AA  L+  ++  D+ G + I   + P  GLG A+ NRL +AA  R
Sbjct: 11  ALSLGREDELETAAHRLYAALRRFDECGVTYILAEACPEEGLGSAVMNRLLKAAGHR 67


>gi|153000435|ref|YP_001366116.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS185]
 gi|151365053|gb|ABS08053.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS185]
          Length = 838

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 13/195 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD   L+ A   L  G  +AI     + L  D+RN  A+  L   K+R A  PL   ++D
Sbjct: 263 TDLAVLKAAANRLHQGQILAIKGLGGFHLICDARNDKAVNTLRLRKQRQA-KPLAVMMAD 321

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVPCGFT 124
           I M + + +  D   L L+    P    +++   +  D+ P    NL K   F       
Sbjct: 322 IQMAQHYVTGTDAEWLVLSSQERP---IVLMSSRAEHDLSPAVAPNLNKLGVFLPYTPLH 378

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV-- 181
             L++ +  PL   SAN SG+  ITN   ++   +   +  I+D     I G + ++V  
Sbjct: 379 HLLLDLFKGPLVATSANVSGEPIITNCDELI-HHLSHVVDAIVDHNRPIINGCDDSVVQV 437

Query: 182 ---NVQCEKKVRILR 193
              N+    +V++LR
Sbjct: 438 IQPNMDSPAEVQVLR 452


>gi|294787792|ref|ZP_06753036.1| Sua5/YciO/YrdC/YwlC family protein [Simonsiella muelleri ATCC
           29453]
 gi|294484085|gb|EFG31768.1| Sua5/YciO/YrdC/YwlC family protein [Simonsiella muelleri ATCC
           29453]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 21/193 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E ++ G  +  PT++ Y L     +  A+ R+  I++    +      +D+S + 
Sbjct: 17  IKQAVETINKGGVVIYPTDSCYALGCRLGDKAAMERILAIRQMNLKHHFTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP       L
Sbjct: 77  TYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNQIALAL 132

Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++  G P     L +P  N      +T+   I    +   + LIIDGG    G E T V 
Sbjct: 133 LKELGEPMLSCTLILPEDNE----PLTDPYEI-RDRLDYAVDLIIDGGWC--GTEPTTV- 184

Query: 183 VQCEKKVRILRPG 195
           +     V ++R G
Sbjct: 185 IDMTDGVELVRQG 197


>gi|329122573|ref|ZP_08251154.1| SUA5/YciO/yrdC family domain protein [Haemophilus aegyptius ATCC
           11116]
 gi|327473124|gb|EGF18550.1| SUA5/YciO/yrdC family domain protein [Haemophilus aegyptius ATCC
           11116]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|186474345|ref|YP_001863316.1| (NiFe) hydrogenase maturation protein HypF [Burkholderia phymatum
           STM815]
 gi|184198304|gb|ACC76266.1| (NiFe) hydrogenase maturation protein HypF [Burkholderia phymatum
           STM815]
          Length = 791

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           +++S  D +ALR A + L  GL +A+ +   + L VD+RNP A+ RL + K+R
Sbjct: 212 RMLSAGD-DALRAAIDALRTGLTVAVKSVGGFHLVVDARNPDAVARLRDRKRR 263


>gi|29654232|ref|NP_819924.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493]
 gi|154706053|ref|YP_001424357.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161829815|ref|YP_001596797.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331]
 gi|29541498|gb|AAO90438.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493]
 gi|154355339|gb|ABS76801.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161761682|gb|ABX77324.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331]
          Length = 204

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 8/191 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +A  T++ Y L     N +   R+  +++    +P      D+S + 
Sbjct: 16  IKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128
            +A +        K   PGP T +   LS T   P  L     KT   RVP     + ++
Sbjct: 76  VYARIANPVFRFLKAHTPGPYTFI---LSATRAVPRQLQHPKRKTIGIRVPDHRVIQAIL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    PL   +    G+    +        +  ++ LI+D G+   G+E T V    + +
Sbjct: 133 EQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVC--GVEPTTVIDLVDGE 190

Query: 189 VRILRPGGLEI 199
             ILR G  +I
Sbjct: 191 PTILREGKGDI 201


>gi|308447376|ref|XP_003087416.1| hypothetical protein CRE_14455 [Caenorhabditis remanei]
 gi|308256659|gb|EFP00612.1| hypothetical protein CRE_14455 [Caenorhabditis remanei]
          Length = 561

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A + L  G  +A PTE V+GL  D  N  A   +  +K+RP    +I     +S
Sbjct: 375 TTSVAEAAQILQQGKVLAYPTEAVWGLGCDPFNEQAFLEILRLKQRPIEKGVILLAGQLS 434

Query: 69  MVKK-HASVDPL 79
            V+     +DP+
Sbjct: 435 QVEHLLTEIDPI 446


>gi|253827255|ref|ZP_04870140.1| transcriptional regulatory protein HypF [Helicobacter canadensis
           MIT 98-5491]
 gi|253510661|gb|EES89320.1| transcriptional regulatory protein HypF [Helicobacter canadensis
           MIT 98-5491]
          Length = 775

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 38/207 (18%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A + L  G  +A+     Y L  D+ N  +I+ L E K RP   P      +I M K
Sbjct: 221 IKSALKALKEGKILALKGIGGYALICDATNANSIKALRERKNRPK-KPFALMCKNIQMAK 279

Query: 72  KHA------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFR 118
            +A            S+ P+ L  +K     PL+L+   LST   I P S          
Sbjct: 280 NYAYLNSQAIAMLNSSISPIVLSYSKTKANLPLSLIAPNLSTLGIILPYS---------- 329

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
              G    L  +   PL   SAN SG+  I +       S+ +++  + DG +S      
Sbjct: 330 ---GLHHLLFHSIDFPLVFTSANISGEPIIKDC-----YSVIQKLQNVCDGILS---YNR 378

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRA 205
            I+N   +  VRIL   G + + L+RA
Sbjct: 379 DILNPIDDSLVRIL---GKKTQVLRRA 402


>gi|16272599|ref|NP_438816.1| hypothetical protein HI0656 [Haemophilus influenzae Rd KW20]
 gi|260581367|ref|ZP_05849182.1| trigger factor [Haemophilus influenzae RdAW]
 gi|1176855|sp|P44807|RIMN_HAEIN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|1573655|gb|AAC22315.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260091962|gb|EEW75910.1| trigger factor [Haemophilus influenzae RdAW]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|238919595|ref|YP_002933110.1| hypothetical protein NT01EI_1694 [Edwardsiella ictaluri 93-146]
 gi|238869164|gb|ACR68875.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 206

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 4/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L  G  I  PT++ Y L       +A+ R+  I++  + +       D+S + 
Sbjct: 17  IKQVVEVLHKGGVIVYPTDSGYALGCMLEEKSAMERICRIRRIDSNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V+  +  L K   PG  T +L   S      L +   KT   RVP     + L+  
Sbjct: 77  SYAFVNNAAFRLLKNNTPGGYTFILK-ASKGVPRRLMSEKRKTIGLRVPSNPIARDLLAE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   S          +    +   + K++ L+I GG   +G + T V    E    
Sbjct: 136 LGEPLMSTSLMLPESEFTESDPEEIQERLGKQVDLVIHGGY--LGQQPTTVIDLTEDTPL 193

Query: 191 ILRPG 195
           ++R G
Sbjct: 194 VVRVG 198


>gi|148827835|ref|YP_001292588.1| hypothetical protein CGSHiGG_06565 [Haemophilus influenzae PittGG]
 gi|212277677|sp|A5UHE9|RIMN_HAEIG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|148719077|gb|ABR00205.1| hypothetical protein CGSHiGG_06565 [Haemophilus influenzae PittGG]
          Length = 183

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAVRL-CDHPSVKALCEITGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|293390210|ref|ZP_06634544.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950744|gb|EFE00863.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 207

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 21/194 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            ++ V   +  L K   PG  T +L   +T ++   L  +  KT   RVP       L++
Sbjct: 77  TYSLVTNSAYRLIKNNTPGRYTFILT--ATKELPRRLMASKRKTIGIRVPDNQIALDLLK 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSS-------ICKEIPLIIDGGISKIGLE-STIV 181
             G P+       S  + + N +H+  S        +  ++ LII GG   +G E +T+V
Sbjct: 135 ALGEPIL------SCSLMLPNEEHLTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVV 186

Query: 182 NVQCEKKVRILRPG 195
           ++  +  V ILR G
Sbjct: 187 DLTGDTPV-ILREG 199


>gi|319775401|ref|YP_004137889.1| ribosome maturation factor SUA5/yciO/yrdC [Haemophilus influenzae
           F3047]
 gi|317449992|emb|CBY86204.1| predicted ribosome maturation factor SUA5/yciO/yrdC [Haemophilus
           influenzae F3047]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|288575494|ref|ZP_05977046.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria mucosa ATCC 25996]
 gi|288567761|gb|EFC89321.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria mucosa ATCC 25996]
          Length = 227

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 21/197 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 38  IKQATDIVRSGGVVVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLSELG 97

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTT---DIHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD       K   PG  T +L          +HP      KT   RVP       L
Sbjct: 98  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNTIALSL 153

Query: 128 IETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++  G P     L +P  +      +T+   I    +   + L+IDGG    G E T V 
Sbjct: 154 LQELGEPLLSCTLMLPEDDE----PLTDPYEI-RDRLEHAVDLVIDGGWC--GTEPTTV- 205

Query: 183 VQCEKKVRILRPGGLEI 199
           +       ++R G  +I
Sbjct: 206 IDMTDGTELIRQGKGDI 222


>gi|309751744|gb|ADO81728.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Haemophilus influenzae R2866]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT--KKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT      T    +   R+ C  +  K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTPY--FLTGKFDSIAVRL-CDHSSVKALCELVGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|261856053|ref|YP_003263336.1| Sua5/YciO/YrdC/YwlC family protein [Halothiobacillus neapolitanus
           c2]
 gi|261836522|gb|ACX96289.1| Sua5/YciO/YrdC/YwlC family protein [Halothiobacillus neapolitanus
           c2]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK--RPAMNPLICHVSDISMVK 71
           +  E L  G  I +PT++ Y LA    + TA+ ++ +I++   P    L+C   D+S + 
Sbjct: 19  QIAEALSDGSVIVLPTDSGYTLACRLEDKTALAKIAQIRRDNEPHHMTLLCR--DLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLS 100
            +A +D       K   PGP T +L+  S
Sbjct: 77  TYAKLDNQHYRFLKTHTPGPYTFILEATS 105


>gi|68249235|ref|YP_248347.1| translation factor SUA5 [Haemophilus influenzae 86-028NP]
 gi|81336361|sp|Q4QMR0|RIMN_HAEI8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|68057434|gb|AAX87687.1| predicted translation factor SUA5 [Haemophilus influenzae 86-028NP]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS---L 81
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
              +  +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SHLQGKYERPTTWIVPAKSTTS-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|304389436|ref|ZP_07371399.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656683|ref|ZP_07909570.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304327246|gb|EFL94481.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492638|gb|EFU82242.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 207

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSD 66
           + +LR+  E +  G  +A PT++ Y L     N   + R+ +I++    +   L+CH  D
Sbjct: 15  ARSLRQIVEIIQDGGIMAYPTDSGYALGCALANGAGLERIRKIRQLDDKHHFTLVCH--D 72

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC 121
            S + +   V      L K   PGP T +L    T ++ P +T N K  T   R+P 
Sbjct: 73  FSQLGQLVMVSNSQYRLIKSLTPGPYTFILK--GTKEV-PRATLNKKKHTVGVRIPA 126


>gi|153206741|ref|ZP_01945582.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918501|ref|ZP_02218587.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334]
 gi|212218383|ref|YP_002305170.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154]
 gi|120577104|gb|EAX33728.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165917747|gb|EDR36351.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334]
 gi|212012645|gb|ACJ20025.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154]
          Length = 204

 Score = 39.3 bits (90), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 8/191 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +A  T++ Y L     N +   R+  +++    +P      D+S + 
Sbjct: 16  IKQAVETVKTGGILAYSTDSGYALGCRLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128
            +A +        K   PGP T +   LS T   P  L     KT   RVP     + ++
Sbjct: 76  VYARIANPVFRFLKAHTPGPYTFI---LSATRAVPRQLQHPKRKTIGIRVPDHRVIQAIL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    PL   +    G+    +        +  ++ LI+D G+   G+E T V    + +
Sbjct: 133 EQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVC--GVEPTTVIDLVDGE 190

Query: 189 VRILRPGGLEI 199
             ILR G  +I
Sbjct: 191 PTILREGKGDI 201


>gi|118489827|gb|ABK96713.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 313

 Score = 39.3 bits (90), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 16/102 (15%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL--ICH- 63
           +D+  L    E L  G    IPT+TVY +  D ++ +AI RL  IK      PL  +CH 
Sbjct: 82  SDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKPLSILCHS 141

Query: 64  VSDISMV---------KKHASVDPLSLHLAKLFWPGPLTLVL 96
           + DI            + HA +        K   PGP T +L
Sbjct: 142 LRDIDTYTTGFPRGDGQGHADI----FRAVKHCLPGPYTFIL 179


>gi|218961320|ref|YP_001741095.1| putative Protein-tyrosine-phosphatase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729977|emb|CAO80889.1| putative Protein-tyrosine-phosphatase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 394

 Score = 39.3 bits (90), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 11/160 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLP-----IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           +IM +     LRK  +F+ A  P     I   T +++G+     +   I R+  +K+R  
Sbjct: 27  EIMLVLKDPGLRKLEKFI-ANNPLIHSTILHWTGSMWGIGCRLSSSETIARIETLKQRAD 85

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
               I  + D+S++++     P+   L   +WPG LTL+ +     D             
Sbjct: 86  KQGFIALIPDMSVLEQDKIPAPIR-PLMNQYWPGNLTLIFNY---DDPQFAGIKRGNKVA 141

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
            RVP     + LI   G PL   S N SG +   N + I+
Sbjct: 142 LRVPSDPALRALISLLGEPLISTSVNVSGLMPEENYERIV 181


>gi|319897809|ref|YP_004136006.1| ribosome maturation factor sua5/ycio/yrdc [Haemophilus influenzae
           F3031]
 gi|317433315|emb|CBY81691.1| predicted ribosome maturation factor SUA5/yciO/yrdC [Haemophilus
           influenzae F3031]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELSGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|307261622|ref|ZP_07543290.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|306868745|gb|EFN00554.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
          Length = 187

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
          N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI
Sbjct: 5  NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLI 56


>gi|229845648|ref|ZP_04465773.1| predicted translation factor SUA5 [Haemophilus influenzae 6P18H1]
 gi|229811448|gb|EEP47152.1| predicted translation factor SUA5 [Haemophilus influenzae 6P18H1]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTS-HFL-TGKFDSIAVRL-CDHPSVKALCELTGFTLTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|298346859|ref|YP_003719546.1| RNA binding protein [Mobiluncus curtisii ATCC 43063]
 gi|315655404|ref|ZP_07908304.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333]
 gi|298236920|gb|ADI68052.1| RNA binding protein [Mobiluncus curtisii ATCC 43063]
 gi|315490344|gb|EFU79969.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333]
          Length = 207

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSD 66
           + +LR+  E +  G  +A PT++ Y L     N   + R+ +I++    +   L+CH  D
Sbjct: 15  ARSLRQIVEIIQDGGIMAYPTDSGYALGCALANGAGLERIRKIRQLDDKHHFTLVCH--D 72

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPC 121
            S + +   V      L K   PGP T +L    T ++ P +T N K  T   R+P 
Sbjct: 73  FSQLGQLVMVSNSQYRLIKSLTPGPYTFILK--GTKEV-PRATLNKKKHTVGVRIPA 126


>gi|226938986|ref|YP_002794057.1| SUA5/YciO/YrdC family protein [Laribacter hongkongensis HLHK9]
 gi|322967314|sp|C1D9T5|RIMN_LARHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|226713910|gb|ACO73048.1| probable SUA5/YciO/YrdC family protein [Laribacter hongkongensis
           HLHK9]
          Length = 185

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 5/167 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHL 83
           +A  TE+ +GL     N   +R +  +K RP    +I      + +++    VD      
Sbjct: 23  LAYATESCFGLGCLPGNARGLRTILRLKGRPNHKGMIVVGRRFADLRRLVRPVDAAGQAR 82

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
               WPGP T +L   +   + PL     +T   RV       ++     PL   SAN +
Sbjct: 83  LMSRWPGPTTFLLP--ADRRVLPLLRGRHRTLAVRVSAHHGVAMLTRDLGPLVSTSANFA 140

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           G++S+ N       +  +E+ +++ G   +    S I++    + +R
Sbjct: 141 GKVSLKNAAAC-RRTFGQEV-MVLPGRTGRARRPSAIIDFASGRVLR 185


>gi|145629659|ref|ZP_01785456.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae 22.1-21]
 gi|144978170|gb|EDJ87943.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae 22.1-21]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTS-HFL-TGKFDSIAVRL-CDHPSVKALCELTGFTLTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|225012824|ref|ZP_03703258.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-2A]
 gi|225003098|gb|EEG41074.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-2A]
          Length = 205

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           + +A   L+ G  I  PT+TVYGL   S N   + R  +I+  +  + PL     DI  +
Sbjct: 17  IEEAARILNQGGLIIFPTDTVYGLGCLSNNKKGLSRFAKIRDVKIELAPLSFLFQDIREL 76

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLD 97
             +   ++  +  L K   PGP  L+++
Sbjct: 77  TNYVQHMNSTTFKLVKKLLPGPYALIMN 104


>gi|159572301|emb|CAP19076.1| yrdC domain containing (E.coli) [Mus musculus]
          Length = 103

 Score = 39.3 bits (90), Expect = 0.86,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 17/102 (16%)

Query: 103 DIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161
           D++P +    +    R+P   F   L + +G PLA+ SAN S Q S  +V+      +  
Sbjct: 10  DLNPFT----RLVGIRIPDHAFMLDLAQMFGGPLALTSANLSSQASSLSVEEF--QDLWP 63

Query: 162 EIPLIIDGGISKIG--------LESTIVNVQCEKKVRILRPG 195
            + L+IDGG   IG        L ST+V++    K  I+RPG
Sbjct: 64  HLSLVIDGG--PIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 103


>gi|146329578|ref|YP_001209160.1| SUA5/yciO/yrdC domain-containing protein [Dichelobacter nodosus
           VCS1703A]
 gi|146233048|gb|ABQ14026.1| Sua5-YciO-YrdC-YwlC domain protein [Dichelobacter nodosus VCS1703A]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 19  LDAGLPIAIPTETVYGLA--VDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           LD G  I  P++T Y L   +D++N +  IRRL ++        L+C  SD++ +  +A 
Sbjct: 24  LDKGGVIVAPSDTGYALLCRLDAKNASVRIRRLRQLDDDHFFT-LLC--SDLTHLSHYAR 80

Query: 76  VDPLSLHLAKLFWPGPLTLVL 96
           VD +   L K  +PG  T +L
Sbjct: 81  VDNVQFRLLKTLFPGAFTCIL 101


>gi|315637441|ref|ZP_07892652.1| hydrogenase maturation protein HypF [Arcobacter butzleri JV22]
 gi|315478231|gb|EFU68953.1| hydrogenase maturation protein HypF [Arcobacter butzleri JV22]
          Length = 748

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +    +  G  IA+     + +  D+ N   + +L EIK RP   P     S I+ +
Sbjct: 203 AIEQTANLIKDGYIIAVKGMGGFHIVCDATNDKVVNKLREIKNRPN-KPFAVMFSSINSI 261

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           K++ +++     +       P+ LV   ++T     ++    K  CF   CG    L + 
Sbjct: 262 KQYTNINYQEEEILTS-KEKPIVLVKKRINTNLSSYIAPNISKLGCFIANCGIHHLLFKY 320

Query: 131 YGHPLAIPSAN 141
             +P+   SAN
Sbjct: 321 LQNPIVATSAN 331


>gi|146280421|ref|YP_001170574.1| hypothetical protein PST_0024 [Pseudomonas stutzeri A1501]
 gi|212288217|sp|A4VFI1|RIMN_PSEU5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|145568626|gb|ABP77732.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
 gi|327478637|gb|AEA81947.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 185

 Score = 39.3 bits (90), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++    + AG  IA PTE V+G+  D  +  A+ RL  +K+RP    LI  ++D     
Sbjct: 7   VQQVARVVRAGGVIAYPTEAVWGVGCDPWDEDAVLRLLALKERPVEKGLIL-IADTVEQF 65

Query: 72  KHASVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------C 121
                D     L +L   WPGP T ++       +    T    +   RV         C
Sbjct: 66  DFLLDDLPERWLDRLSGTWPGPNTWLVP--HRGRLPEWITGRHDSVALRVTDHPLVKRLC 123

Query: 122 GFTKKLIETYGHPLAIPSAN 141
             T  L+ T  +P   P+A 
Sbjct: 124 ALTGPLVSTSANPAGRPAAR 143


>gi|89892405|gb|ABD78986.1| HI0656-like protein [Haemophilus influenzae]
          Length = 183

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPSKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCELTGFTLTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|172035978|ref|YP_001802479.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142]
 gi|171697432|gb|ACB50413.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142]
          Length = 215

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            ++L+ G  + +PT+TVY L V+   P AI +L +IKK     PL      ++   K   
Sbjct: 21  IDYLEQGEVVLLPTDTVYTLVVNGLKPKAIAKLRKIKKFGQDQPL----GILTRGNKAEE 76

Query: 76  VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
           V  L+    ++   +P P+T+++   +   ++   T          P  F   L+E    
Sbjct: 77  VAILNTSAKRMISHFPYPITMIVQ--AHPQLNREITQGFSKIFLSCPDPFIYDLVEQIPF 134

Query: 134 PLAIPSANRSGQ--ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           PL   +A   G+  +S    +          IPLI+DGG S+ G   T+++   E    I
Sbjct: 135 PLVSATAKVGGEPIVSFDAAQRYFRDI----IPLIVDGGRSRYGRRGTLIDFTVEYPT-I 189

Query: 192 LRPGGLEIETLK 203
           +  G + ++ L+
Sbjct: 190 MNFGPISVDDLR 201


>gi|90412190|ref|ZP_01220196.1| putative translation factor [Photobacterium profundum 3TCK]
 gi|90326914|gb|EAS43299.1| putative translation factor [Photobacterium profundum 3TCK]
          Length = 206

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 6/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S + 
Sbjct: 17  MTQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIE 129
            +A VD  +  L +   PG  T +     T ++   L     KT   R+P       L+E
Sbjct: 77  NYARVDNAAFRLLRSNTPGAYTFIFK--GTKEVPRRLMNPKRKTIGIRIPDNAIALALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S          +    +   +   + LI++GG   +G + T V      ++
Sbjct: 135 ELGEPLMSTSLILPNSDVAESDPEDIRDKLEHAVDLIMNGGY--LGEQPTTVIDFSNDEM 192

Query: 190 RILRPGG 196
            +LR G 
Sbjct: 193 EVLRVGA 199


>gi|269140246|ref|YP_003296947.1| hydrogenase maturation protein [Edwardsiella tarda EIB202]
 gi|267985907|gb|ACY85736.1| hydrogenase maturation protein [Edwardsiella tarda EIB202]
 gi|304560076|gb|ADM42740.1| (NiFe) hydrogenase metallocenter assembly protein HypF
           [Edwardsiella tarda FL6-60]
          Length = 774

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           LDAG  +A+     + LA D+ N  AI RL E K+RP   PL   + D+S + ++    P
Sbjct: 210 LDAGHIVAVKGLGGFHLACDAENDAAIARLRERKRRPG-KPLALMLPDLSWLARYCRTAP 268

Query: 79  LSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
                A L  P  P+ L+    +++ + P     L      +P       L+   G PL 
Sbjct: 269 DDGLQALLSSPAAPIVLI---PASSAVPPRVAPGLDEVGVMLPSTPLHHLLMARIGRPLV 325

Query: 137 IPSANRSGQ 145
           + S N +GQ
Sbjct: 326 MTSGNANGQ 334


>gi|291614092|ref|YP_003524249.1| Sua5/YciO/YrdC/YwlC family protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584204|gb|ADE11862.1| Sua5/YciO/YrdC/YwlC family protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 209

 Score = 39.3 bits (90), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 40/86 (46%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L  G  I  PT++ Y L     +  A+ R+ +I+     + L     D+S + 
Sbjct: 17  IKQAAEMLRNGAVIVYPTDSGYALGCHLDDKDAVTRIRQIRGLDDKHFLTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD 97
            +A VD     L K   PG  T +L+
Sbjct: 77  HYARVDNAQFRLLKNNTPGSYTFILE 102


>gi|145639411|ref|ZP_01795016.1| predicted translation factor SUA5 [Haemophilus influenzae PittII]
 gi|145271458|gb|EDK11370.1| predicted translation factor SUA5 [Haemophilus influenzae PittII]
          Length = 183

 Score = 38.9 bits (89), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEKINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPSKSTTP-HFL-TGKFDSIAVRL-CDHPSVKALCELTGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|304413778|ref|ZP_07395222.1| dsRNA-binding putative translation factor [Candidatus Regiella
           insecticola LSR1]
 gi|304283869|gb|EFL92263.1| dsRNA-binding putative translation factor [Candidatus Regiella
           insecticola LSR1]
          Length = 196

 Score = 38.9 bits (89), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 4/162 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ + + L  G  I  PT++ Y L        A+ R+  I++    N       D+S + 
Sbjct: 17  IKLSVDVLSKGGVIIYPTDSGYALGCRLEEKIAMDRICRIRQHNTTNHFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RV        L+ 
Sbjct: 77  TYAHVDNYAFKLIKNNIPGSYTFILR--ATKEVPRRLMNDKRKTIGLRVLTNPIALALMA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
               PL   +    G     +   ++  ++ K++ LII GGI
Sbjct: 135 LLKEPLMSTTLILQGNDRAESDPEVIKKNLSKQVDLIIHGGI 176


>gi|148826708|ref|YP_001291461.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae PittEE]
 gi|212277676|sp|A5UE77|RIMN_HAEIE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|148716868|gb|ABQ99078.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae PittEE]
          Length = 183

 Score = 38.9 bits (89), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFEQINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT      T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPSKSTTPY--FLTGKFDSIAVRL-CDHPSVKALCELTGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|295697076|ref|YP_003590314.1| (NiFe) hydrogenase maturation protein HypF [Bacillus tusciae DSM
           2912]
 gi|295412678|gb|ADG07170.1| (NiFe) hydrogenase maturation protein HypF [Bacillus tusciae DSM
           2912]
          Length = 756

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  ALR+A   L  G  +A+     Y LA D++N  A+R L E K+R A  P      D+
Sbjct: 200 DEAALREAVHLLGRGAIVAVKGLGGYHLACDAKNAGAVRALRERKRRGA-KPFAVMAKDL 258

Query: 68  SMVKKHASVDP 78
           ++ ++   + P
Sbjct: 259 NVARELVDLSP 269


>gi|212212644|ref|YP_002303580.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212]
 gi|212011054|gb|ACJ18435.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212]
          Length = 204

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 8/191 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E +  G  +A  T++ Y L     N +   R+  +++    +P      D+S + 
Sbjct: 16  IKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNKAHPFTLLCRDLSEIA 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVPCG-FTKKLI 128
            +A +        K   PGP T +   LS T   P  L     KT   RVP     + ++
Sbjct: 76  VYARIANPVFRFLKAHTPGPYTFI---LSATQAVPRQLQHPKRKTIGIRVPDHRVIQAIL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    PL   +    G+    +        +  ++ LI+D G+   G+E T +    + +
Sbjct: 133 EQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVC--GVEPTTLIDLVDGE 190

Query: 189 VRILRPGGLEI 199
             ILR G  +I
Sbjct: 191 PTILREGKGDI 201


>gi|126640266|ref|YP_001083250.1| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter
          baumannii ATCC 17978]
          Length = 171

 Score = 38.9 bits (89), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
          +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS V+
Sbjct: 1  MAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHISQVE 47


>gi|170078339|ref|YP_001734977.1| YrdC domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169886008|gb|ACA99721.1| yrdC domain protein [Synechococcus sp. PCC 7002]
          Length = 211

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 5/173 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+    E LD G  + I T+ VY L  ++ NP A  +++E+K      PL   ++    
Sbjct: 10  QAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPLTLLLTP-PK 68

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           V ++  +   +  L   F P P++++L      ++    TA         P  F   L  
Sbjct: 69  VPEYGILSAEAQTLVNQF-PYPISVILP--HRNNLAEGVTAGHSEVFVSCPDQFIYDLAA 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               P+A  +A+   ++   + K    +   +++ LIIDGG +K  + +T+++
Sbjct: 126 QAPFPIAAGTASLGSEMRANDAK-TAEAFFGQQVSLIIDGGKAKERIRTTLID 177


>gi|240948328|ref|ZP_04752714.1| SUA5 protein, possible translation factor [Actinobacillus minor
          NM305]
 gi|240297367|gb|EER47908.1| SUA5 protein, possible translation factor [Actinobacillus minor
          NM305]
          Length = 184

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
          +A PTE V+GL  +  +  A++ L ++KKRP    LI    D+ +++ +     LS
Sbjct: 17 VAYPTEAVFGLGCNPNSEQAVKLLLDLKKRPEEKGLILIAHDVELLRPYIDESQLS 72


>gi|254362317|ref|ZP_04978429.1| possible translation factor [Mannheimia haemolytica PHL213]
 gi|261493259|ref|ZP_05989786.1| putative translation factor [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496498|ref|ZP_05992878.1| putative translation factor [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153093897|gb|EDN74825.1| possible translation factor [Mannheimia haemolytica PHL213]
 gi|261307701|gb|EEY09024.1| putative translation factor [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311109|gb|EEY12285.1| putative translation factor [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 184

 Score = 38.9 bits (89), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 39/172 (22%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL--- 81
           +A PTE V+GL  + ++  A+R+L  +K+RP    LI   SD+  +  +  +D   +   
Sbjct: 17  VAYPTEAVFGLGCNPQSEKAVRKLLVLKQRPEEKGLILLASDLKYLLPY--IDEARMTEQ 74

Query: 82  ------HLAK--LFW--------PGPLT--------------LVLDLLSTTDIHPLST-A 110
                 H+ +  + W        P  LT               V+ L   + +   ST A
Sbjct: 75  AWQRLSHIGEQAITWIVPVKNTVPSYLTGKFDSIAVRLCNVPAVVQLCEASGVALTSTSA 134

Query: 111 NLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
           NL       PC   K++I+ +G    +  A+  G+ + + ++ I S  I ++
Sbjct: 135 NLSG---EPPCRNAKEVIDQFGQDFPVLHADTLGRENPSEIRDIFSQQIFRQ 183


>gi|159462480|ref|XP_001689470.1| translation factor [Chlamydomonas reinhardtii]
 gi|158283458|gb|EDP09208.1| translation factor [Chlamydomonas reinhardtii]
          Length = 278

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 9   SNALR--KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           SNA R  +  + + AG    IPT+T+  +  D  N  A+ RLY +K+  A  PL      
Sbjct: 69  SNAWRLDEVVQLIKAGGVGVIPTDTLPAIVCDLHNRDAVLRLYSVKEMDARKPLSILCPS 128

Query: 67  ISMVKKHASVDPLS-----LHLAKLFWPGPLTLVL-----------DLLSTTDIH 105
           +S +  + +  P +      ++A+   PGP T VL           D +S  +IH
Sbjct: 129 LSTITTYTTGFPTTASANWFNVARRLLPGPYTFVLPATKNLPPQCIDFMSGKNIH 183


>gi|75907707|ref|YP_322003.1| SUA5/yciO/yrdC-like protein [Anabaena variabilis ATCC 29413]
 gi|75701432|gb|ABA21108.1| SUA5/yciO/yrdC-like protein [Anabaena variabilis ATCC 29413]
          Length = 194

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 21/185 (11%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS----MVKKHASVDPLS 80
           ++ PT+TV  LA     P     ++  K+R    PLI   +        V+       + 
Sbjct: 19  VSFPTDTVPALAT---LPEQAGLIFAAKQRSQDKPLILMAASAEDLWPYVEGSEQDQQIW 75

Query: 81  LHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
             +   +WPG LTLVL         ++P+   +  T   RVP     + I +   PLA  
Sbjct: 76  EQVVSQYWPGALTLVLPASKRVPKVMNPI---DPTTIGIRVPKNAIAQKILSQTGPLATT 132

Query: 139 SANRSGQISITNVKHI---LSSSICKE-IPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           SAN SGQ ++  +  I     S +  E   L ++G    IGL ST+     E   +ILR 
Sbjct: 133 SANFSGQPALLTMAEIDAQFPSVLTLESTALEMEG----IGLPSTVAKWTGENW-QILRQ 187

Query: 195 GGLEI 199
           G + +
Sbjct: 188 GAVSL 192


>gi|309973849|gb|ADO97050.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Haemophilus influenzae R2846]
          Length = 183

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   +     + ++   L
Sbjct: 16  VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRPFVDFELINDEQL 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF--TKKLIETYGHPLAIPS 139
           ++L   +  P T ++   STT  H L T    +   R+ C     K L E  G  L   S
Sbjct: 76  SRLQGKYERPTTWIVPAKSTTP-HFL-TGKFDSIAIRL-CDHPSVKALCEITGFALTSTS 132

Query: 140 ANRSGQ 145
           AN +G+
Sbjct: 133 ANLTGE 138


>gi|254500948|ref|ZP_05113099.1| (NiFe) hydrogenase maturation protein HypF [Labrenzia alexandrii
           DFL-11]
 gi|222437019|gb|EEE43698.1| (NiFe) hydrogenase maturation protein HypF [Labrenzia alexandrii
           DFL-11]
          Length = 773

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 13/73 (17%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL----- 60
           I  ++ +R A   L AG  IA+     + LAVD+ N  A+ RL E KKRP   PL     
Sbjct: 199 IETADPIRWAASRLAAGEIIALKGLGGFHLAVDATNDAAVARLREKKKRP-HKPLAVMVR 257

Query: 61  -------ICHVSD 66
                  ICHVSD
Sbjct: 258 DLEQARTICHVSD 270


>gi|119509689|ref|ZP_01628835.1| hypothetical protein N9414_21841 [Nodularia spumigena CCY9414]
 gi|119465708|gb|EAW46599.1| hypothetical protein N9414_21841 [Nodularia spumigena CCY9414]
          Length = 216

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V  +A V  
Sbjct: 24  LSSGAVMLYPTDTVYAIGCDLNAKSAVERVRQIKQLANDKPLTFLCPSLSNVATYAFVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHP--LSTANLKTACFRVP 120
            +  + K   PG  T    LL  T + P  + +   KT   RVP
Sbjct: 84  TAYRIMKRLIPGSYTF---LLPATKLVPRLVQSPKRKTTGIRVP 124


>gi|47177028|ref|YP_015639.1| [Ni/Fe] hydrogenase maturation protein [Oligotropha carboxidovorans
           OM5]
 gi|47115419|emb|CAG28472.1| [NiFe] hydrogenase maturation protein HypF [Oligotropha
           carboxidovorans OM5]
          Length = 787

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           +AI     Y LA D+ +P A+ RL  +K+R A  P      D+ MV+++ SVD
Sbjct: 213 VAIKALGGYQLACDATDPDAVARLRGLKRREA-KPFALMARDLDMVRRYCSVD 264


>gi|253989544|ref|YP_003040900.1| hypothetical protein PAU_02064 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780994|emb|CAQ84156.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 206

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 6/184 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           ++ +    G  +  PT++ Y +     +  A+ R+  I++    +       D+S +  +
Sbjct: 19  QSVDVFKNGGVVVYPTDSGYAIGCHLEDKDAMTRICRIRQLDNHHNFTLMCRDLSEISTY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD  +  L K   PG  T +  L +T ++   L     KT   RVP       L+E  
Sbjct: 79  AYVDNSAFRLIKNNTPGNYTFI--LRATKEVPRRLMNDKRKTIGLRVPSNPIALALLEQV 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL   S    G     +    +  ++ K + LII GG   +G + T V    +    +
Sbjct: 137 GEPLMSTSLILPGNDFAESDPEEIKDNLGKLVDLIIHGGY--LGQQPTTVIDLTDDTPVV 194

Query: 192 LRPG 195
           +R G
Sbjct: 195 IRKG 198


>gi|229828577|ref|ZP_04454646.1| hypothetical protein GCWU000342_00641 [Shuttleworthia satelles DSM
           14600]
 gi|229793171|gb|EEP29285.1| hypothetical protein GCWU000342_00641 [Shuttleworthia satelles DSM
           14600]
          Length = 444

 Score = 38.5 bits (88), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G   AI    +  + +I  V+H L S +   + L +  G+  +G E  +V    E   
Sbjct: 71  TVGAERAIVCVKKEYKAAIQAVEHGLESGLYPHVSLHLLQGVYPMGDEVVLVY---EATG 127

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
           R++RPGGL IE      +VE  Y V    T ++P
Sbjct: 128 RVIRPGGLPIEEGVIVFNVETMYNVSRALTQEAP 161


>gi|15639175|ref|NP_218621.1| hypothetical protein TP0182 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025415|ref|YP_001933187.1| hypothetical protein TPASS_0182 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322447|gb|AAC65168.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017990|gb|ACD70608.1| hypothetical protein TPASS_0182 [Treponema pallidum subsp. pallidum
           SS14]
          Length = 259

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 38/204 (18%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN---------PLICHVSDISMVKKHAS 75
           +A+PT+TVYG +     P A+  L  +K R             P I  ++D   V  +  
Sbjct: 71  VALPTDTVYGFS--GLVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYTG 128

Query: 76  VD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
              P      +  WPGP T VL +            +  T  FR P   + + +I   G 
Sbjct: 129 TRLPAEF---RALWPGPYTFVLRM-----------QDGATQAFRCPADLWLRSVIRAVGG 174

Query: 134 PLAIPSANRSGQISI---TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            +   SANR G+  +    ++ HI      K + L +D G    G  S ++++      R
Sbjct: 175 AIFSTSANRHGEPPLQDAQDIDHIFG----KHLALTVDAG-PLTGSPSAVIDLT-HPVPR 228

Query: 191 ILRPGG--LEIETLKRAISVELEY 212
           +LR G   L +  L+R  S  L +
Sbjct: 229 VLRAGAAPLPLAGLERRDSPSLPH 252


>gi|284007497|emb|CBA72979.1| dsRNA-binding protein [Arsenophonus nasoniae]
          Length = 206

 Score = 38.5 bits (88), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 12/189 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVY--GLAVDSRNP-TAIRRLYEIKKRPAMNPLICHVSDIS 68
           + +    L+ G  I  PT++ Y  G  +D++N  T I RL ++  R     L+C   ++S
Sbjct: 17  ISQCVNILNKGGIIVYPTDSGYAIGCKLDNKNALTQICRLRQLDSRHNFT-LMCR--NLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKK 126
            + ++A +D     + K   PG  T +L   +T ++   +     KT   R+P     K 
Sbjct: 74  EIAEYAYLDNPVFRMIKNSTPGHYTFILR--ATKEVPRRIMNKKRKTIGIRLPSNPIAKD 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PL   S    G     +    + S I +++ LII+GG   +  +ST V    E
Sbjct: 132 LLNGIGEPLLSTSLILPGDDFAQSSAEEIESLIGEQVDLIINGGY--LSEKSTTVVDLTE 189

Query: 187 KKVRILRPG 195
               I+R G
Sbjct: 190 STPNIIRVG 198


>gi|49081744|gb|AAT50272.1| PA0022 [synthetic construct]
          Length = 186

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  D  N  A+ RL  +K RP     I   ++I  +    
Sbjct: 10  AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGPIVVAANIHQLDFLL 69

Query: 75  SVDPLSLHLAKL--FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--------CGFT 124
              P  + L +L   WPGP T ++       +    T    +   RV         C  T
Sbjct: 70  EDLP-DVWLDRLAGTWPGPNTWLVP--HQERLPEWVTGVHDSVAVRVTDHPLVQELCHLT 126

Query: 125 KKLIETYGHPLAIPSA 140
             LI T  +P   P+A
Sbjct: 127 GPLISTSANPAGRPAA 142


>gi|256822097|ref|YP_003146060.1| Sua5/YciO/YrdC/YwlC family protein [Kangiella koreensis DSM 16069]
 gi|256795636|gb|ACV26292.1| Sua5/YciO/YrdC/YwlC family protein [Kangiella koreensis DSM 16069]
          Length = 207

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +  PT++ Y L     +  A+ R+ +I+     +       D+S +  +A VD  + 
Sbjct: 27  GGVVVYPTDSGYALGCHIGDKKALDRIRQIRDLEKDHNFTLVCRDLSELAFYARVDNTAF 86

Query: 82  HLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPS 139
            L K   PGP T +  L +T ++ + L     KT   RVP    ++ ++E  G P+   S
Sbjct: 87  RLIKNNTPGPYTFI--LRATAEVPNRLKHPKKKTIGIRVPDNAISQAILEALGEPMMNTS 144

Query: 140 ANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               GQ     +  + +   +   +  +IDGG      E+T+V++
Sbjct: 145 LILPGQDEGEVLAPYEIFDELNGRVDAVIDGGYCG-HQETTVVDM 188


>gi|329118384|ref|ZP_08247090.1| translation factor RimN [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465430|gb|EGF11709.1| translation factor RimN [Neisseria bacilliformis ATCC BAA-1200]
          Length = 187

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+S  ++  L+     L  G  IA PTE+ YG+    R+  A++ L  +K+RP    +I
Sbjct: 3   RILSAAETGRLK---NRLRRGGLIAYPTESCYGIGCLPRHAGALKSLVRLKRRPQHKGMI 59

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
             V   S+ +    + PL    A      WP   T +L       +        K A  R
Sbjct: 60  --VVGDSLSRLRPLLRPLFAADAAALDGIWPARQTFLLPAARNVPVLLRGRGRGKLA-VR 116

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           VP     + +    G PL   S NR+G+    + + +
Sbjct: 117 VPAHAAARDVCYLLGTPLVSTSCNRAGKRPCRSAREV 153


>gi|325525441|gb|EGD03262.1| putative translation factor [Burkholderia sp. TJI49]
          Length = 116

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 20/115 (17%)

Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA-- 278
           ++ G LK+HYAPR+ + L      P +AL     V   + E   +    S+ G+  +A  
Sbjct: 1   RASGTLKAHYAPRTPLAL-----LPFDALESLLAVAQADGERVALVARASRAGRWAQADG 55

Query: 279 -------------AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                        A +L+  ++  D +  + I    +P     IA+N+RL RAAA
Sbjct: 56  VHFVAAPEDPQAYARDLYGILRTLDRAQVARILVEKLPETVEWIAVNDRLGRAAA 110


>gi|307546301|ref|YP_003898780.1| translation factor [Halomonas elongata DSM 2581]
 gi|307218325|emb|CBV43595.1| K07566 putative translation factor [Halomonas elongata DSM 2581]
          Length = 207

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   +  G  IA PT++ Y L     +  AI R+  ++     +      SD+S +  +
Sbjct: 19  QAVRIIRDGGVIAYPTDSGYALGCHLGDKKAIERIKWLRSLDDKHNFTLVCSDLSEIGTY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIE 129
           A VD     L K   PG  T +L   S      +HP      ++   RVP     + L+ 
Sbjct: 79  AKVDNAVFRLLKAHTPGAYTFILQATSEVPRLLLHP----KRRSIGVRVPDHPIPRALLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +    G+         +       + L+IDGG     LE T V    E   
Sbjct: 135 ELGEPLMSVTLIPVGEEQPMTEAEEIRERFGAHLDLVIDGGACH--LEPTSVIDLRELPP 192

Query: 190 RILRPG 195
           +I+R G
Sbjct: 193 QIVREG 198


>gi|149920237|ref|ZP_01908709.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1]
 gi|149819003|gb|EDM78442.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1]
          Length = 217

 Score = 38.5 bits (88), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 17/208 (8%)

Query: 1   MQIMSITDSNAL--RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +++   TD++AL  R A    + GL + +P    Y +  D  N +A+  L   K+R    
Sbjct: 4   IKLDDTTDTSALAQRLAATLEEGGL-VCLPCNGSYRIVADLTNTSAVLDLMVSKQRTRKA 62

Query: 59  PLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPLSTANLKT 114
           P +  +   + +++  A++   +  LA   WP PLT+ +   D L       L     K 
Sbjct: 63  PALVFIDSHARLEEIDAALPEPARVLADALWPKPLTIRVQLGDALPRKVKKELGGKKAKV 122

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANR---SGQISITNVKHILSSSICKEIPLIIDGG 170
              RVP     +      G PL + SANR   +G+ S   V+     S    + + +D G
Sbjct: 123 G-VRVPADALARATAAALGRPLLVSSANRQKKAGESSPAQVRR----SFGARVDIFVDAG 177

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLE 198
             +    ST++++  +  + I R G +E
Sbjct: 178 DIQKKSASTVIDI-VDGALSIERQGTVE 204


>gi|146328766|ref|YP_001209262.1| hypothetical protein DNO_0343 [Dichelobacter nodosus VCS1703A]
 gi|322967307|sp|A5EW39|RIMN_DICNV RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|146232236|gb|ABQ13214.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 190

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG   A PTE VYGL  +  +  A+  +  +K R A   LI    + +      S     
Sbjct: 22  AGGVFAYPTEAVYGLGGNPADERAVCEILRLKGRTAAKGLIMVAGNWAQCCGWVSGVSKR 81

Query: 81  LHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
                + W G  P T ++        H ++TA+ KTA         ++L    G PL   
Sbjct: 82  DQAEMMDWAGDYPTTFIVYAGEKLCAH-VATADGKTAIRISQHPLIQELCALIGQPLLST 140

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           SAN SGQ    +V  +       ++P+++ G +      S I++    + +R
Sbjct: 141 SANLSGQEPARSVAAV--RQYFPDLPMVL-GALGAAERPSRIIDWHSRQVIR 189


>gi|317010330|gb|ADU84077.1| transcriptional regulatory protein HypF [Helicobacter pylori
           SouthAfrica7]
          Length = 757

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            + D +AL +  + +  G  IA+     + L  D+RN   I RL  +K RP + P     
Sbjct: 195 QLNDGDALLECAKDIQKGKIIALKGLGGFALVCDARNFQTIERLRLLKNRP-LKPFALMF 253

Query: 65  SDISMVKKHASVDPLS 80
            D++  K+HA ++ L 
Sbjct: 254 KDLNTAKQHAFLNELE 269


>gi|33152183|ref|NP_873536.1| hypothetical protein HD1051 [Haemophilus ducreyi 35000HP]
 gi|33148405|gb|AAP95925.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 205

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L        A+ R+  I+K P  +      SD++ + 
Sbjct: 17  INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLAELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V   S  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNTIALALISA 134

Query: 131 YGHPL 135
            G P+
Sbjct: 135 LGEPI 139


>gi|294648882|ref|ZP_06726338.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus
          ATCC 19194]
 gi|292825273|gb|EFF84020.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus
          ATCC 19194]
          Length = 189

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
          ++++  A + L  G  +A PTE V+GL  D  N  A + + E K RP
Sbjct: 3  TSSVADAAQLLKQGQVLAYPTEAVWGLGCDPFNEQAFQNVLECKHRP 49


>gi|226952179|ref|ZP_03822643.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244]
 gi|226837017|gb|EEH69400.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244]
          Length = 189

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
          ++++  A + L  G  +A PTE V+GL  D  N  A + + E K RP
Sbjct: 3  TSSVADAAQLLKQGQVLAYPTEAVWGLGCDPFNEQAFQNVLECKHRP 49


>gi|114332006|ref|YP_748228.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91]
 gi|114309020|gb|ABI60263.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91]
          Length = 210

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 38/85 (44%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + +  G  I  PT++ Y L     N  A+ R+  I+K    +       D++ + 
Sbjct: 17  IRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVGQDHNFTLVCRDLAEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL 96
            +A VD     L K   PG  T +L
Sbjct: 77  TYAKVDNAQYRLLKATTPGSYTFIL 101


>gi|254361757|ref|ZP_04977892.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
 gi|153093292|gb|EDN74288.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
          Length = 205

 Score = 38.1 bits (87), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEIIRNGGVIVYPTDSGYALGCAMGDKHAMDRIVAIRKLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A V+  +  L K   P P T +L   +T ++        KT   RVP       LI  
Sbjct: 77  IYALVNNQAYRLIKNNTPNPYTFILP--ATKELPRRLMTKRKTVGIRVPDNAIALALISA 134

Query: 131 YGHPL 135
            G P+
Sbjct: 135 LGEPI 139


>gi|307151374|ref|YP_003886758.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981602|gb|ADN13483.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7822]
          Length = 193

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 8/138 (5%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG  ++ PT+TV  LA     P+    ++  K+RP   PLI   + +  +  + S     
Sbjct: 15  AGKVVSFPTDTVPALAA---LPSYSGLIFVAKQRPQDKPLILMGASLEDLWPYVSGTAKE 71

Query: 81  L----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
           L     L + + PG LTLVL       +  ++  +  T   RVP     ++I +   PLA
Sbjct: 72  LDIWQELGQKYLPGALTLVLPASEKIPVA-MNPTDPTTIGIRVPKHQVAQMILSKTGPLA 130

Query: 137 IPSANRSGQISITNVKHI 154
             SAN SG+ ++ ++  I
Sbjct: 131 TTSANLSGEPALLSMNKI 148


>gi|294635973|ref|ZP_06714415.1| Sua5/YciO/YrdC/YwlC family protein [Edwardsiella tarda ATCC 23685]
 gi|291090702|gb|EFE23263.1| Sua5/YciO/YrdC/YwlC family protein [Edwardsiella tarda ATCC 23685]
          Length = 206

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 4/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  + L  G  I  PT++ Y L        A+ R+  I++  + +       D+S + 
Sbjct: 17  IKQVVDILRKGGVIVYPTDSGYALGCMLEEKNAMERICRIRRIDSNHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A VD  +  L K   PG  T +L   S      L +   KT   RVP     + L+  
Sbjct: 77  SYAFVDNAAFRLLKNNTPGGYTFILK-ASKEVPRRLMSEKRKTIGLRVPSNPIAQDLLAE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   +          +    +   + K + L+I GG   +G + T V    +   +
Sbjct: 136 LGEPLMSTTLMLPDSEFAESDPEEIQERLGKLVDLVIHGGY--LGQQPTTVIDMTDDNPQ 193

Query: 191 ILRPG 195
           ++R G
Sbjct: 194 VVRVG 198


>gi|34541326|ref|NP_905805.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83]
 gi|34397642|gb|AAQ66704.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83]
          Length = 200

 Score = 38.1 bits (87), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L +A   L  G  I  PTE  Y    D+    ++ R+ E+K   P    L    SD+SM 
Sbjct: 15  LERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRRKSLSIMCSDMSMA 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            ++  +D  +    K       T VL   S+    P    N K    R+     T+ L E
Sbjct: 75  AEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSL---PKVFKNRKQVGIRLALHPLTRLLAE 131

Query: 130 TYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE-K 187
           + G PL   S     +     +   ++       + +++DGGI  I  E T V V C   
Sbjct: 132 SLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGI--IPFEQTTV-VDCTVS 188

Query: 188 KVRILRPGG 196
              ILR GG
Sbjct: 189 PYTILREGG 197


>gi|226326234|ref|ZP_03801752.1| hypothetical protein PROPEN_00076 [Proteus penneri ATCC 35198]
 gi|225205312|gb|EEG87666.1| hypothetical protein PROPEN_00076 [Proteus penneri ATCC 35198]
          Length = 449

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  +AL +ACE L AG  IA+     + L  D+RN  ++  L E K RPA  PL   ++ 
Sbjct: 189 TKEHALTQACEALLAGKIIAVKGIGGFHLVCDARNNESVALLRERKYRPA-KPLAVMITG 247

Query: 67  ISMVK 71
           I  +K
Sbjct: 248 IDQIK 252


>gi|261494041|ref|ZP_05990544.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496198|ref|ZP_05992604.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308150|gb|EEY09447.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310207|gb|EEY11407.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 205

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEIIRNGGVIVYPTDSGYALGCAMGDKHAMDRIVAIRKLPENHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A V+  +  L K   P P T +L   +T ++        KT   RVP       LI  
Sbjct: 77  IYALVNNQAYRLIKNNTPNPYTFILP--ATKELPRRLMTKRKTVGIRVPDNAIALALISA 134

Query: 131 YGHPL 135
            G P+
Sbjct: 135 LGEPI 139


>gi|289808082|ref|ZP_06538711.1| putative ribosome maturation factor [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 77

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
          IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K +
Sbjct: 23 IAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKPY 71


>gi|294634811|ref|ZP_06713335.1| [NiFe] hydrogenase maturation protein HypF [Edwardsiella tarda ATCC
           23685]
 gi|291091779|gb|EFE24340.1| [NiFe] hydrogenase maturation protein HypF [Edwardsiella tarda ATCC
           23685]
          Length = 774

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A +  C+ L++G  +AI     + LA D+ +  AI RL   K+RPA  PL   +  I 
Sbjct: 200 EEAWQAVCQVLESGGIVAIKGLGGFHLACDASDAAAIARLRTRKQRPA-KPLALMLPGID 258

Query: 69  MVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCG-FTK 125
            + ++    P +  +A L  P  P+ L+      +D  P   A  L      +P      
Sbjct: 259 WLARYCRTTPEAGLVALLNSPAAPIVLI----PASDAVPTGVAPGLDEVGVMLPSTPLHH 314

Query: 126 KLIETYGHPLAIPSANRSGQ 145
            L+   G PL + S N SGQ
Sbjct: 315 LLLARLGRPLVMTSGNASGQ 334


>gi|293390830|ref|ZP_06635164.1| protein YrdC [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951364|gb|EFE01483.1| protein YrdC [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 183

 Score = 37.7 bits (86), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS-LHL 83
           +A PTE V+GL  +  + +A+  L  +K+RP    LI     +  +       PL+ LH 
Sbjct: 16  VAYPTEAVFGLGCNPNSQSAMENLLVLKQRPVSKGLILIAPALDFLLPFIDERPLAELHW 75

Query: 84  AKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSA 140
            +L   +  P T V+    TT      T +  +   R+      KL+ E  G  L   SA
Sbjct: 76  QRLTAQYARPTTWVVPAKKTTP--KFLTGDFDSIAVRISQHPAVKLLCEQAGFALTSTSA 133

Query: 141 NRSGQ 145
           N SGQ
Sbjct: 134 NLSGQ 138


>gi|225451447|ref|XP_002273946.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082345|emb|CBI21350.3| unnamed protein product [Vitis vinifera]
          Length = 306

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S TDS  L    + L  G    IPT+TVY +    R+ +AI RL  IK   A  PL    
Sbjct: 72  SGTDSWKLEPVADLLKEGAVGVIPTDTVYAIVCHLRSHSAIERLRRIKDIEASKPLSILC 131

Query: 65  SDISMVKKHASVDPLSL--------HLAKLFWPGPLTLVL 96
             +  +  + +  P  +           K   PGP T +L
Sbjct: 132 RSLRDIDTYTTGFPCGIGQGQTNIFRAVKHCLPGPYTFIL 171


>gi|269219483|ref|ZP_06163337.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211062|gb|EEZ77402.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 205

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVK 71
           K  E + +G  IA PT++ Y L     N   + R+  I++    +   L+CH  D + + 
Sbjct: 19  KVVEHIRSGEVIAFPTDSGYALGCSLGNKEGLERIRSIRQVGDKHHFTLLCH--DFAQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVP 120
           + A V      L K   PGP T +L    T D+ P  + N K  T   R+P
Sbjct: 77  QLAIVGNSEFRLIKSLTPGPYTFILK--GTKDV-PRISVNPKKHTVGARIP 124


>gi|253699760|ref|YP_003020949.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M21]
 gi|251774610|gb|ACT17191.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M21]
          Length = 758

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL+   E L  G  +A+     Y LAVD+ N  A+ RL + KKR    P     +D+ 
Sbjct: 201 GDALQLTLEALAQGKIVAVKGVGGYHLAVDAANQAALERLRQRKKRDE-KPFAMLAADLD 259

Query: 69  MVKKHASVDPLSLHL 83
            V++HA    L   L
Sbjct: 260 AVRRHAHCSELEGRL 274


>gi|293192668|ref|ZP_06609622.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus
           F0309]
 gi|292820175|gb|EFF79172.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus
           F0309]
          Length = 205

 Score = 37.7 bits (86), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 10/159 (6%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKH 73
            + L+ G  IA+PT++ Y +A  + N   +  +  I+K    +   L+CH    + + + 
Sbjct: 20  VDLLERGGTIALPTDSGYAIATKAGNKAGMDTIRAIRKLDDKHNFSLLCH--SFAQLGEL 77

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKKLIET 130
             +D       K   PGP T +  L  T ++ P    N K  T   R+P    T+ ++E 
Sbjct: 78  VIIDNHEFRTMKALTPGPYTFI--LRGTKEV-PRIMLNKKKHTVGVRIPDHVITQAIVEA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            G PLA  +    G+         +   I  ++ L++ G
Sbjct: 135 LGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVG 173


>gi|188994286|ref|YP_001928538.1| hypothetical protein PGN_0422 [Porphyromonas gingivalis ATCC 33277]
 gi|188593966|dbj|BAG32941.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 200

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMV 70
           L +A   L  G  I  PTE  Y    D+    ++ R+ E+K   P    L    SD+SM 
Sbjct: 15  LERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRRKNLSIMCSDMSMA 74

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            ++  +D  +    K       T VL   S+    P    N K    R+     T+ L E
Sbjct: 75  AEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSL---PKVFKNRKQVGIRLALHPLTRLLAE 131

Query: 130 TYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE-K 187
           + G PL   S     +     +   ++       + +++DGGI  I  E T V V C   
Sbjct: 132 SLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGI--IPFEQTTV-VDCTVS 188

Query: 188 KVRILRPGG 196
              ILR GG
Sbjct: 189 PYTILREGG 197


>gi|320161188|ref|YP_004174412.1| hydrogenase maturation protein HypF [Anaerolinea thermophila UNI-1]
 gi|319995041|dbj|BAJ63812.1| hydrogenase maturation protein HypF [Anaerolinea thermophila UNI-1]
          Length = 765

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL+KA + L  G  +AI     + LA D+ N TA++ L   KKR +  P    V D+S
Sbjct: 204 EEALQKARQLLKEGAILAIKGLGGFHLACDAANETAVKTLRNRKKR-SDKPFAVMVFDLS 262

Query: 69  MVKKHASVD 77
            V+K A  D
Sbjct: 263 KVEKIAEFD 271


>gi|24373654|ref|NP_717697.1| hydrogenase maturation protein HypF [Shewanella oneidensis MR-1]
 gi|24347998|gb|AAN55141.1|AE015650_11 hydrogenase maturation protein HypF [Shewanella oneidensis MR-1]
          Length = 808

 Score = 37.7 bits (86), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 4/146 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  +AI     + L  D+RN  A+ +L + K+R A  PL   +  I M K
Sbjct: 222 LSAAANMLAQGHILAIKGLGGFHLMCDARNSHAVSQLRQRKQRKA-KPLAVMMPSIEMAK 280

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVPCGFTKKLIET 130
           ++  V         L  P    +++  L   D++P    N+ K   F         L+  
Sbjct: 281 QY--VTGTEAEWQTLSSPERPIVLMQALDEHDLNPEIAPNIPKLGVFLPYTPLHHLLLSQ 338

Query: 131 YGHPLAIPSANRSGQISITNVKHILS 156
           +  PL   SAN SG+  IT+   ++S
Sbjct: 339 FNGPLVATSANVSGEPIITDCDALIS 364


>gi|119469322|ref|ZP_01612261.1| putative RNA binding protein with YrdC/RibB domain [Alteromonadales
           bacterium TW-7]
 gi|119447186|gb|EAW28455.1| putative RNA binding protein with YrdC/RibB domain [Alteromonadales
           bacterium TW-7]
          Length = 206

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 14/190 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  +  PT++ Y +  +  N  A  R+  I+     +       D+S + 
Sbjct: 17  ITQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIDKNDNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRV-----PCGFTK 125
            +A VD     L K   PGP T +     T ++   L     KT   RV      C    
Sbjct: 77  TYARVDNQLFRLIKNNTPGPYTFIFK--GTKEVPKRLLNDKKKTIGIRVIEHPIACALLA 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L    G PL   S    GQ    +    +   + K + LII GG   +  ++T V    
Sbjct: 135 EL----GEPLMSCSLILPGQEFTESDPDEILDRLDKHVDLIIHGGY--LPEQATTVIDLS 188

Query: 186 EKKVRILRPG 195
           E  V+ILR G
Sbjct: 189 EDDVKILRVG 198


>gi|84496393|ref|ZP_00995247.1| hypothetical protein JNB_02700 [Janibacter sp. HTCC2649]
 gi|84383161|gb|EAP99042.1| hypothetical protein JNB_02700 [Janibacter sp. HTCC2649]
          Length = 207

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 10/189 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++++A + L  G  IA PT++ Y L     N +A  R+ +I+K    +      +D + +
Sbjct: 16  SIKQAVDTLREGGLIAYPTDSGYALGAALGNQSAKDRIRDIRKLDDKHHYTLVCADFAQL 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKK 126
                VD       K   PGP T +L          +HP      KT   R+P     + 
Sbjct: 76  GHFVHVDNAVFRAVKASTPGPYTFILPATGEVPRRVLHP----KKKTVGVRIPEHPVVQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+   +    G+         +   +   + ++ID G  + G E T V     
Sbjct: 132 LLAELGEPMLTSTLILPGETEPMTDGWQVKEELDHVVDVVIDSG--ECGTEPTTVIDLSG 189

Query: 187 KKVRILRPG 195
               +LR G
Sbjct: 190 DVAEVLRVG 198


>gi|114777136|ref|ZP_01452156.1| Sua5/YciO/YrdC/YwlC [Mariprofundus ferrooxydans PV-1]
 gi|114552657|gb|EAU55117.1| Sua5/YciO/YrdC/YwlC [Mariprofundus ferrooxydans PV-1]
          Length = 205

 Score = 37.4 bits (85), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + L  GL +A+PT+T Y L        A+  + ++++    +      +D+SM  
Sbjct: 19  VRRAADLLRQGLFVAVPTDTTYALMCRPDATDAVAAIRQLRRLDDSHLWAVACADLSMAS 78

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVL 96
               +D  +  + K   PGP T +L
Sbjct: 79  ACVRMDNHAHRILKRCLPGPYTFIL 103


>gi|242239361|ref|YP_002987542.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech703]
 gi|242131418|gb|ACS85720.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech703]
          Length = 206

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 6/188 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           ++ + L  G  I  PT++ Y L     + TA+ R+  I+     +       D+S +  +
Sbjct: 19  QSVDILRKGGVIVYPTDSGYALGCMLEDKTAMERICRIRNLDQHHNFTLMCRDLSELSSY 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIETY 131
           A VD  +  L K   PG  T +L   +T ++   L     KT   RVP      +L+   
Sbjct: 79  AYVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGMRVPSNPIALELLAAL 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+   +    G     +    +   + K++ L+I GG   +G + T V    E   ++
Sbjct: 137 NAPMMSTTLMLPGNDFAESDPEEIQEHLGKQVDLVIHGGF--LGQQPTTVIDLTEPAPQV 194

Query: 192 LRPGGLEI 199
           +R G  ++
Sbjct: 195 VRDGSGDV 202


>gi|251789771|ref|YP_003004492.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya zeae Ech1591]
 gi|247538392|gb|ACT07013.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya zeae Ech1591]
          Length = 206

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 6/172 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L  G  I  PT++ Y L     +  A+ R+  I+     +       D+S + 
Sbjct: 17  INQTVEILRKGGVIVYPTDSGYALGCMLEDKAAMERICRIRSLDQNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP      +L+ 
Sbjct: 77  SYAYVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNEKRKTIGMRVPSNPIALELLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               PL   +    G     +    +   + K + L+I GG   +G + T V
Sbjct: 135 VLNEPLMSTTLMLPGNDFAESDPEEIQERLGKLVDLVIHGGF--LGQQPTTV 184


>gi|160875032|ref|YP_001554348.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS195]
 gi|160860554|gb|ABX49088.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS195]
          Length = 840

 Score = 37.4 bits (85), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD   L+ A + L  G  +AI     + L  D+RN  A+ +L   K+R A  PL   ++D
Sbjct: 265 TDLAVLKAAADRLHQGQILAIKGLGGFHLICDARNDKAVNKLRLRKQRQA-KPLAVMMAD 323

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA---NL-KTACFRVPC 121
           I M + + +  D     L+    P      + L+S+   H LS A   NL K   F    
Sbjct: 324 IQMAQHYVTGTDAEWQVLSSQERP------IVLMSSRAEHDLSLAVAPNLNKLGVFLPYT 377

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
                L+  +  PL   SAN SG+  ITN   ++
Sbjct: 378 PLHHLLLGLFKGPLVATSANVSGEPIITNCDELI 411


>gi|271500650|ref|YP_003333675.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech586]
 gi|270344205|gb|ACZ76970.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech586]
          Length = 206

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 6/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L     I  PT++ Y L     +  A+ R+  I++    +       D+S + 
Sbjct: 17  INQTVEILRKSGVIVYPTDSGYALGCMLEDKAAMERICRIRELDQNHNFTLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCG-FTKKLIE 129
            +A VD  +  L K   PG  T +L   +T ++   L     KT   RVP       L+ 
Sbjct: 77  SYAYVDNAAFRLIKNNTPGNYTFILK--ATKEVPRRLMNDKRKTIGMRVPSNPIALDLLS 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   +    G     +    +   + K + LII GG   +G + T V    E   
Sbjct: 135 VLNEPLMSTTLMLPGNDFAESDPEEIQEQLGKRVDLIIHGGF--LGQQPTTVIDLTEDVP 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 VVVREG 198


>gi|288941674|ref|YP_003443914.1| (NiFe) hydrogenase maturation protein HypF [Allochromatium vinosum
           DSM 180]
 gi|288897046|gb|ADC62882.1| (NiFe) hydrogenase maturation protein HypF [Allochromatium vinosum
           DSM 180]
          Length = 789

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A   L  G  +AI     + LA D+ + TA+  L + K+R A  P      D  +
Sbjct: 211 DAIAAASRLLTEGRILAIKGIGGFHLACDATHDTAVETLRQRKRRFA-KPFALMARDPDV 269

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +++HA +  L      L  P    L+L+ L  +D+ P       T  F +P       L+
Sbjct: 270 IRRHARLSELEAEW--LASPAAPILLLERLRESDLAPGIAPGQSTLGFMLPYSPLHHLLL 327

Query: 129 ETYGHPLAIPSANRSGQ 145
             +  PL + S N S +
Sbjct: 328 ADWDRPLVMTSGNLSDE 344


>gi|315267264|gb|ADT94117.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS678]
          Length = 838

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 12/154 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD   L+ A + L  G  +AI     + L  D+RN  A+ +L   K+R A  PL   ++D
Sbjct: 263 TDLAVLKAAADRLHQGQILAIKGLGGFHLICDARNDKAVNKLRLRKQRQA-KPLAVMMAD 321

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA---NL-KTACFRVPC 121
           I M + + +  D     L+    P      + L+S+   H LS A   NL K   F    
Sbjct: 322 IQMAQHYVTGTDAEWQVLSSQERP------IVLMSSRAEHDLSLAVAPNLNKLGVFLPYT 375

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
                L+  +  PL   SAN SG+  ITN   ++
Sbjct: 376 PLHHLLLGLFKGPLVATSANVSGEPIITNCDELI 409


>gi|114563279|ref|YP_750792.1| (NiFe) hydrogenase maturation protein HypF [Shewanella
           frigidimarina NCIMB 400]
 gi|114334572|gb|ABI71954.1| (NiFe) hydrogenase maturation protein HypF [Shewanella
           frigidimarina NCIMB 400]
          Length = 803

 Score = 37.4 bits (85), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 30/215 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL +A E ++ G  +AI     + L  D+ N  A+  L + K+R A  PL   V++++  
Sbjct: 212 ALEQAVEMINRGGIVAIKGLGGFHLVCDATNNDAVAALRQRKQRLA-KPLAIMVTNLAQA 270

Query: 71  KKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTD-----------IHPLSTANL------ 112
           K    V         L  P  P+TL+   +++ D           IHP++ + L      
Sbjct: 271 K--LCVSGTETEWQVLTSPEKPITLMTKRVASVDGKDNGRDNCGNIHPIALSPLLAPGID 328

Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           +   F         L++    P+   SANRSG+  I N      + I + +  ++DG   
Sbjct: 329 RLGVFLPYTPLHHLLMQRLHKPIVATSANRSGEPIIAN-----QAEIEQHLSHVVDG--- 380

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            +G    I+N  C+  V  +  G L++  L R  +
Sbjct: 381 ILGHNRPIINA-CDDSVVQVIDGQLQVIRLARGYA 414


>gi|227496187|ref|ZP_03926493.1| RNA binding protein [Actinomyces urogenitalis DSM 15434]
 gi|226834270|gb|EEH66653.1| RNA binding protein [Actinomyces urogenitalis DSM 15434]
          Length = 205

 Score = 37.4 bits (85), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           D GL +A PT++ Y LA    N   + R+  I++    +      +D +     A V   
Sbjct: 26  DGGL-VAYPTDSGYALACAPGNKEGLDRIRAIRQLDDKHNFTFVCADFAQAGPLAIVGNN 84

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVP-CGFTKKLIETYGHPLA 136
           +  L K   PGP T +L    T ++ P  T N K  T   R+P    T+ L+  +G P+ 
Sbjct: 85  AFRLIKRLTPGPWTFILK--GTKEV-PRMTLNPKKHTLGVRIPDHAITQALVAGFGAPIL 141

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
             +  R G          +  ++   I ++I+G ++
Sbjct: 142 SSTFIRPGNEEPETSGWEIEDALGHLIDVVIEGPVT 177


>gi|256081558|ref|XP_002577036.1| SUMO ligase [Schistosoma mansoni]
 gi|238662329|emb|CAZ33273.1| SUMO ligase, putative [Schistosoma mansoni]
          Length = 1258

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 58   NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            N L  H+ + + ++   +VDP  +  A   WP  L   +   S +  + ++  ++  +  
Sbjct: 945  NDLNSHLDEFTTIRNELTVDPKQISRADSNWPPGLVQTMLRTSNSSFNNINQFDINDS-- 1002

Query: 118  RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
                 F ++L+E   H +      R+  IS+ + + +L +   K + L  DGG SK
Sbjct: 1003 --KSAFYQRLLEVTAHRVNQTMLKRNSHISLKDNEKLLYN---KALSLAFDGGGSK 1053


>gi|291300925|ref|YP_003512203.1| (NiFe) hydrogenase maturation protein HypF [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570145|gb|ADD43110.1| (NiFe) hydrogenase maturation protein HypF [Stackebrandtia
           nassauensis DSM 44728]
          Length = 764

 Score = 37.4 bits (85), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL +A   L+ G  IA+     Y L  D+ + TA+RRL  +K RP   PL   V  +   
Sbjct: 209 ALSQAIAVLETGGLIAMKGVGGYQLVTDAGDDTAVRRLRHVKNRPG-KPLAVMVGTLDRA 267

Query: 71  KKHASVD 77
           ++ A +D
Sbjct: 268 RRLADLD 274


>gi|288553290|ref|YP_003425225.1| [NiFe] hydrogenase maturation protein HypF [Bacillus pseudofirmus
           OF4]
 gi|288544450|gb|ADC48333.1| [NiFe] hydrogenase maturation protein HypF [Bacillus pseudofirmus
           OF4]
          Length = 779

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A+R   + L  G  I+I     Y LA D + P AI  L EIK RP   PL   +  + 
Sbjct: 209 ESAIRGTIDALTEGRIISIKGLGGYHLACDMKQPYAITHLREIKSRPT-RPLAVMMRSLE 267

Query: 69  MVKKHASV 76
           +VK++  V
Sbjct: 268 IVKQYCHV 275


>gi|154508878|ref|ZP_02044520.1| hypothetical protein ACTODO_01389 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798512|gb|EDN80932.1| hypothetical protein ACTODO_01389 [Actinomyces odontolyticus ATCC
           17982]
          Length = 205

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 10/159 (6%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN--PLICHVSDISMVKKH 73
            + L+ G  IA+PT++ Y +A  + N   +  +  I+K    +   L+CH    + + + 
Sbjct: 20  VDLLERGGTIALPTDSGYAVATRAGNKAGMDTIRAIRKLDDKHNFSLLCH--SFAQLGEL 77

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFRVPCG-FTKKLIET 130
             +D       K   PGP T +  L  T ++ P    N K  T   R+P    T+ ++E 
Sbjct: 78  VIIDNHEFRTMKALTPGPYTFI--LRGTKEV-PRIMLNKKKHTVGVRIPDHVITQAIVEA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            G PLA  +    G+         +   I  ++ L++ G
Sbjct: 135 LGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVG 173


>gi|322515024|ref|ZP_08068033.1| translation factor [Actinobacillus ureae ATCC 25976]
 gi|322118975|gb|EFX91148.1| translation factor [Actinobacillus ureae ATCC 25976]
          Length = 184

 Score = 37.0 bits (84), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
          N L    E L     +A PTE V+GL  +  +  A+R L ++KKRP    LI
Sbjct: 2  NNLENIVEQLKQNNVVAYPTEAVFGLGCNPNSEAAVRALLKLKKRPEEKGLI 53


>gi|290953955|ref|ZP_06558576.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312676|ref|ZP_06803422.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 106

 Score = 37.0 bits (84), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D+S + 
Sbjct: 17  LKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKDLSEIF 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD 97
           ++A VD  +  L K + PGP T +L+
Sbjct: 77  EYAKVDNNAYRLLKRYTPGPYTFILN 102


>gi|116180920|ref|XP_001220309.1| hypothetical protein CHGG_01088 [Chaetomium globosum CBS 148.51]
 gi|88185385|gb|EAQ92853.1| hypothetical protein CHGG_01088 [Chaetomium globosum CBS 148.51]
          Length = 1139

 Score = 37.0 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 23   LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
            +P+A PTETVYGL  D+    A+R +Y  K  PA+
Sbjct: 1102 VPVAFPTETVYGLGADATRSAAVRGIYSAKG-PAL 1135


>gi|325294647|ref|YP_004281161.1| Acylphosphatase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065095|gb|ADY73102.1| Acylphosphatase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 756

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+R   E+L+ G  IA+     + L  D+ N  A++ L + K+R    P      D   
Sbjct: 204 DAIRLTIEYLEKGKIIALKGLGGFHLICDATNEKAVKELRKRKQREE-KPFAVMFPDFET 262

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI-HPLSTANLKTACFRVPCGFTKKLI 128
            KK+A +  L     K     P+ ++L+    TD+ + +S  N     F         ++
Sbjct: 263 TKKYAYISSLEKRALKSV-ESPI-VILEKKENTDLAYSISPENKTIGAFLPYTPLHHIIL 320

Query: 129 ETYGHPLAIPSANRSGQ 145
           + +G P+   SAN + +
Sbjct: 321 KDFGKPIVATSANLTDE 337


>gi|317124934|ref|YP_004099046.1| translation factor SUA5 [Intrasporangium calvum DSM 43043]
 gi|315589022|gb|ADU48319.1| translation factor SUA5 [Intrasporangium calvum DSM 43043]
          Length = 207

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 10/186 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L  G  IA PT++ + L     NP    R+  I+     +      +D + + + 
Sbjct: 19  QAVQILRDGGLIAYPTDSGFALGCSLDNPDGRSRILRIRGLDDRHHFTLVCADFAQLGQF 78

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCG-FTKKLIE 129
           A +D       K   PGP T ++          +HP      +T   R+P     + L++
Sbjct: 79  AQLDNTVFRAVKSHTPGPYTFIVPATKQVPRRLLHP----KKRTVGVRIPDHPVVRALLQ 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+   +    G          +   +   +  +ID G  + GLE T V    +   
Sbjct: 135 AHGEPILSSTLLMPGDEEPMTDGWAIKERLDHVVDAVIDSG--ECGLEPTTVVDFSDGYA 192

Query: 190 RILRPG 195
            ++R G
Sbjct: 193 ELIRVG 198


>gi|325971179|ref|YP_004247370.1| SUA5/yciO/yrdC domain [Spirochaeta sp. Buddy]
 gi|324026417|gb|ADY13176.1| SUA5/yciO/yrdC domain [Spirochaeta sp. Buddy]
          Length = 189

 Score = 36.6 bits (83), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 31/174 (17%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q++  T    + +    L     + +P +T+YGL+   +  T++ +L  +K++   +  I
Sbjct: 6   QLLYKTVDTTVDQVVRLLQENKILVLPCDTIYGLS--GQYNTSLEKLCSLKQKKGQHQFI 63

Query: 62  CHVSDISMVKKHASVDPLSLHLAKL------FWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                 ++++ H        HL K+       WP  LT++L+          +     + 
Sbjct: 64  VLA---TLMQAH--------HLCKIPPVLEKHWPCALTVILE----------NQNGEGST 102

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
             RVP   FT++++   G P+   S N +G  +IT++  I+ +   K   ++ID
Sbjct: 103 AIRVPDDPFTQQILNKLGKPIYSTSVNDAG-FAITSITDIIFTYKQKVQAIVID 155


>gi|158431283|pdb|2YV4|A Chain A, Crystal Structure Of C-Terminal Sua5 Domain From
           Pyrococcus Horikoshii Hypothetical Sua5 Protein Ph0435
          Length = 105

 Score = 36.6 bits (83), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++E A NLF  ++  D +G   +    +   GLG+A+ NRL +A+ 
Sbjct: 54  VEEVAKNLFKALRYXDKAGVDVVIAEGVEERGLGLAVXNRLRKASG 99


>gi|37522843|ref|NP_926220.1| hypothetical protein glr3274 [Gloeobacter violaceus PCC 7421]
 gi|35213845|dbj|BAC91215.1| glr3274 [Gloeobacter violaceus PCC 7421]
          Length = 197

 Score = 36.6 bits (83), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 14/185 (7%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASV 76
           +L AG   A+PT+TV GL      P    ++Y +K R    PLI   +  + +  + A  
Sbjct: 24  YLRAGGVGAMPTDTVPGLVC---LPEYAEQIYALKGRDEHKPLILLGAAAADLAFYTAQW 80

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
                 LA+  WPG LTLVL +       +H        T   R+P       +     P
Sbjct: 81  RSEWTELAERGWPGALTLVLPVGGRVPAAVH----RGGGTVGVRIPNHPDAHALLAKTGP 136

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           LA  SANRSGQ  +   + I  +        ++ G     G  ST+V  + +   ++LR 
Sbjct: 137 LASTSANRSGQPVLIEPQAIRRTFAGVA---LLAGTYRGSGTASTVVRWE-DDGWQVLRQ 192

Query: 195 GGLEI 199
           G  ++
Sbjct: 193 GDFKL 197


>gi|89255812|ref|YP_513174.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009603|ref|ZP_02274534.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367173|ref|ZP_04983204.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|89143643|emb|CAJ78841.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134252994|gb|EBA52088.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           holarctica 257]
          Length = 121

 Score = 36.6 bits (83), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D+S + 
Sbjct: 17  LKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKDLSEIF 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLD 97
           ++A VD  +  L K + PGP T +L+
Sbjct: 77  EYAKVDNNAYRLLKRYTPGPYTFILN 102


>gi|223042141|ref|ZP_03612312.1| hypothetical protein AM202_0726 [Actinobacillus minor 202]
 gi|223017080|gb|EEF15521.1| hypothetical protein AM202_0726 [Actinobacillus minor 202]
          Length = 184

 Score = 36.6 bits (83), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
          +A PTE V+GL  +  +  A++ L ++KKRP    LI    ++ +++ +     LS
Sbjct: 17 VAYPTEAVFGLGCNPNSEQAVKLLLDLKKRPEEKGLILIAHNLELLRPYIDESQLS 72


>gi|315444891|ref|YP_004077770.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp.
           Spyr1]
 gi|315263194|gb|ADT99935.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp.
           Spyr1]
          Length = 756

 Score = 36.6 bits (83), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +   + LR A   L AG  +A+     Y LA D+  P A+  L   +KR    P    V 
Sbjct: 199 LAGESGLRAARRMLRAGKIVAVKGIGGYHLACDATGPRAVTTL-RARKRRGDKPFAVMVP 257

Query: 66  DISMVKKHASVDPLSLHL 83
           D+   ++ A VDP S  L
Sbjct: 258 DLDAARRVAEVDPASAAL 275


>gi|145224560|ref|YP_001135238.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium gilvum
           PYR-GCK]
 gi|145217046|gb|ABP46450.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium gilvum
           PYR-GCK]
          Length = 756

 Score = 36.6 bits (83), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +   + LR A   L AG  +A+     Y LA D+  P A+  L   +KR    P    V 
Sbjct: 199 LAGESGLRAARRMLRAGKIVAVKGIGGYHLACDATGPRAVTTL-RARKRRGDKPFAVMVP 257

Query: 66  DISMVKKHASVDPLSLHL 83
           D+   ++ A VDP S  L
Sbjct: 258 DLDAARRVAEVDPASAAL 275


>gi|206895108|ref|YP_002247264.1| [NiFe] hydrogenase maturation protein HypF [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737725|gb|ACI16803.1| [NiFe] hydrogenase maturation protein HypF [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 764

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
           LRK  + L  G  +AI +   Y LA D+ N TA+ RL ++K+RP
Sbjct: 202 LRKTVDILKDGKVVAIKSLGGYLLACDALNETAVNRLRKLKRRP 245


>gi|82697921|gb|ABB88998.1| hypothetical protein [uncultured crenarchaeote]
          Length = 167

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 22/151 (14%)

Query: 191 ILRPGGLEIETLKRAIS-VELEYCV--------DETSTPQSPGMLKSHYAPRSQVRL-RA 240
           +LRPGGL +E ++  I  + +   +           +  +SPGM   HY+P++ + L + 
Sbjct: 11  LLRPGGLPLERIREVIDKISIHSSILNPKKDHLKSGNGYKSPGMKYRHYSPKADLILVKG 70

Query: 241 IHVNPREALIRFGN-----------VPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKI 288
             +  R  ++               +  K+I N  I+  +   G   +  +  LF   + 
Sbjct: 71  TKIKVRNKIVELARRMRNEQSKSVCIMTKSINNNYIADIVWFVGNDFETISRGLFEIFRY 130

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            D+     I    +    LG+A+ +RL+RAA
Sbjct: 131 VDNHNIDVIIAEEMDCVDLGLAVMDRLKRAA 161


>gi|256379000|ref|YP_003102660.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827]
 gi|255923303|gb|ACU38814.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827]
          Length = 206

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 38/86 (44%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +A E + AG  IA PT++ Y L     N   + R+ +I+     +       D + +
Sbjct: 16  AIDQAVEVVRAGGLIAYPTDSCYALGCQLGNKEGLDRIRQIRNLDDKHHFTLVCRDFAQL 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVL 96
            + A V+  +    K   PG  T +L
Sbjct: 76  GQFAYVENAAFRAIKAATPGSYTFIL 101


>gi|308050856|ref|YP_003914422.1| (NiFe) hydrogenase maturation protein HypF [Ferrimonas balearica
           DSM 9799]
 gi|307633046|gb|ADN77348.1| (NiFe) hydrogenase maturation protein HypF [Ferrimonas balearica
           DSM 9799]
          Length = 771

 Score = 36.2 bits (82), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL +A + L AG  +AI     Y LAVD+ N  A+  L + K RP+  P    V+D++
Sbjct: 202 EQALTEAVDALRAGQIVAIKALGGYHLAVDASNDQAVSTLRQRKHRPS-KPFALMVADLA 260

Query: 69  MV 70
           M 
Sbjct: 261 MA 262


>gi|145637788|ref|ZP_01793438.1| hypothetical protein CGSHiHH_02760 [Haemophilus influenzae
          PittHH]
 gi|145269033|gb|EDK08986.1| hypothetical protein CGSHiHH_02760 [Haemophilus influenzae
          PittHH]
          Length = 67

 Score = 36.2 bits (82), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 26/37 (70%)

Query: 25 IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
          +A PTE V+GL  + ++ +A+++L ++K+RP    LI
Sbjct: 16 VAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLI 52


>gi|298370013|ref|ZP_06981329.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281473|gb|EFI22962.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 242

 Score = 36.2 bits (82), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 10/174 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+  + 
Sbjct: 53  VKQAADIIRNGGVVVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLRELG 112

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDL---LSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +A VD       K   PG  T +L     +    +HP      KT   RVP       L
Sbjct: 113 TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTLHP----KRKTIGLRVPDNTIALSL 168

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           ++  G PL   +             + +   +   + L+IDGG    G E T V
Sbjct: 169 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWC--GTEPTTV 220


>gi|196232005|ref|ZP_03130861.1| hypothetical protein CfE428DRAFT_4027 [Chthoniobacter flavus
           Ellin428]
 gi|196224127|gb|EDY18641.1| hypothetical protein CfE428DRAFT_4027 [Chthoniobacter flavus
           Ellin428]
          Length = 35

 Score = 36.2 bits (82), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           M+  D++G   I    +P HGLGIAI +RL +A+A
Sbjct: 1   MRRLDEAGLDMILAEEVPEHGLGIAIMDRLRKASA 35


>gi|118474454|ref|YP_892105.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413680|gb|ABK82100.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 741

 Score = 36.2 bits (82), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 70/175 (40%), Gaps = 19/175 (10%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   D  A+R     L +G  IAI     + L  D+ N  AI  L E K RP   P   
Sbjct: 192 IVLANDEEAIRLCANELKSGKIIAIKGIGGFHLVCDATNQKAISSLRERKNRPD-KPFAI 250

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLSTA-NLKT-ACF 117
              DI M    A ++         F    LT  +    LL + +I P + A NLK    F
Sbjct: 251 MCKDIQMASLVAYINE--------FEEDALTSNIKPIILLKSKEILPANLALNLKKIGIF 302

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
             P      L E    P+   SAN SG+  I + +     SI K++  + DG + 
Sbjct: 303 LPPTSLHLLLFEYIDFPIIATSANISGEPIIIDFE-----SISKKLIKVCDGALD 352


>gi|170727252|ref|YP_001761278.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908]
 gi|169812599|gb|ACA87183.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908]
          Length = 213

 Score = 35.8 bits (81), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 6/193 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  I  PT++ Y L        A+ R+  I++    +       D S + 
Sbjct: 24  INQAVNAIKNGGVIVYPTDSGYALGCLLGEKDAMSRIARIRQIDNDHNFSLMCRDQSELS 83

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIET 130
            +A VD  +  + K   PGP T +    S      L     KT   RVP       L+E 
Sbjct: 84  TYAKVDNQAYRVLKHNTPGPYTFIFK-ASKEVPKRLQNPKKKTIGIRVPDNVIALALLEA 142

Query: 131 YGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
              PL   S    G + + ++ +HI    +  ++ +II GG   +G + T V    E  +
Sbjct: 143 LDEPLMSTSLILPGEEFTESDPEHI-RDILEHQVDVIIHGGY--LGEKPTTVIDLSEGDI 199

Query: 190 RILRPGGLEIETL 202
            I+R G  +I + 
Sbjct: 200 EIIREGAGDISSF 212


>gi|119356556|ref|YP_911200.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353905|gb|ABL64776.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium
           phaeobacteroides DSM 266]
          Length = 773

 Score = 35.8 bits (81), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           + LAVD+RN  A+R L E K R    P    +SD+ +V++   V+P
Sbjct: 240 FHLAVDARNDAAVRLLRERKGREE-KPFAVMMSDMELVRQFCDVEP 284


Searching..................................................done


Results from round 2




>gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040437|gb|ACT57233.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 330

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 330/330 (100%), Positives = 330/330 (100%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL
Sbjct: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP
Sbjct: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI
Sbjct: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA
Sbjct: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS
Sbjct: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300

Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330
           SIPNHGLGIAINNRLERAAAPRNQSQRIVP
Sbjct: 301 SIPNHGLGIAINNRLERAAAPRNQSQRIVP 330


>gi|315121975|ref|YP_004062464.1| hypothetical protein CKC_01125 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495377|gb|ADR51976.1| hypothetical protein CKC_01125 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 320

 Score =  410 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 251/319 (78%), Positives = 285/319 (89%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSITDS+ L++ACEFLDAGLPI IPTETVYGLAV++R+P+AIRRLYEIK+RP  NPLICH
Sbjct: 1   MSITDSDVLQQACEFLDAGLPIVIPTETVYGLAVNARDPSAIRRLYEIKQRPPTNPLICH 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           VS+ISMVKK+A +D LSLHL+KLFWPGPLTLVLDLLS  DIHPL+ +NL TACFRVP GF
Sbjct: 61  VSNISMVKKYAHIDDLSLHLSKLFWPGPLTLVLDLLSENDIHPLAISNLNTACFRVPRGF 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            KKLI+TYG+PLAIPSAN SGQIS TN++HILSS ICK+IPL IDGGISKIGLESTIVNV
Sbjct: 121 AKKLIDTYGYPLAIPSANISGQISTTNIQHILSSPICKQIPLAIDGGISKIGLESTIVNV 180

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + ++ + ILRPGGLEI+ +++AI  ++EY   ET+TP SPG L+SHYAPRSQVRLRA H+
Sbjct: 181 KHDQTIHILRPGGLEIDKIEKAIGGKIEYSTSETATPLSPGRLQSHYAPRSQVRLRATHI 240

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
           NP EALIRF N PIKN +NAIISLNLSK+GKLKEAAFNLFNYMKIADDSGA SIAFS IP
Sbjct: 241 NPGEALIRFANFPIKNSKNAIISLNLSKSGKLKEAAFNLFNYMKIADDSGAISIAFSPIP 300

Query: 304 NHGLGIAINNRLERAAAPR 322
           NHGLGIAINNRLERAAAPR
Sbjct: 301 NHGLGIAINNRLERAAAPR 319


>gi|325292109|ref|YP_004277973.1| hypothetical protein AGROH133_04322 [Agrobacterium sp. H13-3]
 gi|325059962|gb|ADY63653.1| hypothetical protein AGROH133_04322 [Agrobacterium sp. H13-3]
          Length = 325

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/320 (51%), Positives = 217/320 (67%), Gaps = 1/320 (0%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +      AL+ A E L  G PIA+PTETVYGLA D+ +P AI R+YE K RP  NPLICH
Sbjct: 7   IENERETALQAAVEELSRGQPIALPTETVYGLAADATDPAAITRIYETKGRPQFNPLICH 66

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           ++DI+M +++A  DP+S  LA+ FWPGPLTLVL L   + IH L+TA L T   RVP GF
Sbjct: 67  MADIAMAERYAVFDPVSRRLAEAFWPGPLTLVLPLKPASGIHSLATAGLDTVGIRVPQGF 126

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              LI  +  PLA PSAN SG+IS T+  H+  + +   I LI+DGG + +G+ESTIV V
Sbjct: 127 AGDLIRRFDKPLAAPSANSSGKISPTSAAHV-EADLGNRINLILDGGAASVGVESTIVKV 185

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + + +VR+LRPGG+  E ++R    +LE     ++  ++PGML SHYAP + VRL A  V
Sbjct: 186 EDDGRVRLLRPGGIVTEEIERITGTQLERPEKASAAIEAPGMLASHYAPGAAVRLDATSV 245

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
           +  EALIRFG + ++  E A   L+LS +G L EAA NLF+Y+K AD SGA++IA ++IP
Sbjct: 246 SANEALIRFGGIAVEGQETARTVLDLSPSGDLAEAAANLFDYLKAADASGAATIAVTTIP 305

Query: 304 NHGLGIAINNRLERAAAPRN 323
            HGLG AIN+RL RAAAPR 
Sbjct: 306 AHGLGEAINDRLSRAAAPRG 325


>gi|159184438|ref|NP_353749.2| hypothetical protein Atu0724 [Agrobacterium tumefaciens str. C58]
 gi|159139751|gb|AAK86534.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 325

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 168/320 (52%), Positives = 218/320 (68%), Gaps = 1/320 (0%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +      AL+ +   L  G PIA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH
Sbjct: 7   IETERETALQASVAELADGRPIALPTETVYGLAADATNPAAITRIYETKGRPQFNPLICH 66

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           ++DI+M +++A  DP+S  LA+ FWPGPLTLVL L   +DIH L+TA L T   RVP GF
Sbjct: 67  MADIAMAERYAVFDPISRKLAEAFWPGPLTLVLPLKPESDIHSLATAGLDTVGIRVPQGF 126

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              LI  +G PLA PSAN SG+IS T+  H+  + + ++I L++DGG + +G+ESTIV V
Sbjct: 127 ASDLIRRFGKPLAAPSANSSGKISPTSAAHV-EADLGQKINLVLDGGAAAVGVESTIVKV 185

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + + +VR+LRPGG+  E ++R   V LE     ++  ++PGML SHYAP + VRL A  V
Sbjct: 186 EQDGRVRLLRPGGIVTEEIERLAGVRLERPKKASAAIEAPGMLASHYAPGATVRLGATSV 245

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EALIRFG + I   E A   L+LS +G L EAA NLF+Y+K AD SGA +IA ++IP
Sbjct: 246 LPDEALIRFGGIAISGEETARTILDLSPSGDLAEAAANLFDYLKAADASGADTIAITAIP 305

Query: 304 NHGLGIAINNRLERAAAPRN 323
            HGLG AIN+RL RAAAPR 
Sbjct: 306 THGLGEAINDRLSRAAAPRG 325


>gi|121602316|ref|YP_988708.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583]
 gi|120614493|gb|ABM45094.1| Sua5/YciO/YrdC family protein [Bartonella bacilliformis KC583]
          Length = 320

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/324 (47%), Positives = 213/324 (65%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+ + +S+++++A E L  G  + +PTETVYGLA D+ N  A+  ++ IK RP  NPL
Sbjct: 1   MTILPL-NSHSIKEAVEILKKGQLVVLPTETVYGLAGDATNGKAVASIFAIKGRPQFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVS I M + +  +D LS  L + FWPGPLTLVL L    +IHPL+TA L T   R P
Sbjct: 60  IAHVSSIKMAECYVEIDCLSRRLMEAFWPGPLTLVLPLKPHHNIHPLTTAGLNTLAVRFP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G   ++++ +G PLA PSAN+SG +S T+   +   S+ +++ LIID G +KIGLESTI
Sbjct: 120 DGGFAEIVQCFGRPLAAPSANQSGYLSPTSAASVF-DSLGEKVSLIIDNGPAKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V V C+  + +LRPGG+  E +++ +   L+  +D+ +  ++PGMLKSHYAP S VRL A
Sbjct: 179 VKV-CDGNIYLLRPGGIIAEDIEKVVEKSLKR-MDQCAAIEAPGMLKSHYAPNSLVRLNA 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I  +ENAI  LNLS++G+L+EAAFN F YMK  D   A  IA  
Sbjct: 237 QTVENGEALLAFGTQRIAGVENAIYVLNLSESGQLEEAAFNFFQYMKQLDLFKARCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP +GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGE 320


>gi|138896951|ref|YP_001127404.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268464|gb|ABO68659.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 345

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/329 (36%), Positives = 176/329 (53%), Gaps = 16/329 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +++A E+L  G  IA PTETVYGL  D+ N TA+ +++  K RP+ NPLI HV+ ++ V
Sbjct: 20  QIQEAAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASLAQV 79

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   AS+ P++  L + FWPGPLTLVL       +    TA L T   R+P       LI
Sbjct: 80  ESIAASIPPVAKTLMERFWPGPLTLVLPKRDGA-VSERVTAGLSTVAVRMPDHPLALALI 138

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++   E  
Sbjct: 139 EASGLALAAPSANRSGRPSPTTAAHVL-ADLNGRIAGVIDGGPTGVGVESTVLDCSGEVP 197

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR--------LRA 240
             ILRPGG+  E L   I    E   DE + P++PGM  +HYAP++ +         L+ 
Sbjct: 198 -TILRPGGVTKEALSEVIGRVEEAAGDEQTAPKAPGMKYTHYAPKAPLWIAAGPPSFLQR 256

Query: 241 IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           +    R      G +  +  +N   A + L       L+  A  L++ ++  D++G + I
Sbjct: 257 LVDESRAEGKTVGVLTTEENKNRYVADVVLACGARRDLETVAQRLYDVLRQFDETGVNLI 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
              + P  G+G AI NRL +AA  R  S+
Sbjct: 317 YSEAFPEEGIGAAIMNRLRKAAGGRVISE 345


>gi|319408205|emb|CBI81858.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 320

 Score =  372 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/324 (48%), Positives = 215/324 (66%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+ + +S ++++A E L  G  +A+PTETVYGLA D+ N  A+  ++  KKRP  NPL
Sbjct: 1   MTILPL-NSASIKEAVEVLKQGQLVALPTETVYGLAGDATNGKAVASIFTTKKRPQFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVS I M + +  +D LS    + FWPGPLTLVL L    +IHPL+T+ L T   R P
Sbjct: 60  IVHVSSIVMAEHYVEIDLLSRRFMEAFWPGPLTLVLPLKVNHNIHPLTTSGLDTLAVRFP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G   ++++ +G PLA PSAN+SG +S T+   +  +S+   +PLIIDGG+SKIGLESTI
Sbjct: 120 VGGFAEVVQHFGRPLAAPSANQSGGLSPTSAASVF-ASLGASVPLIIDGGVSKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + V C+K + +LRPGG+  E ++      L+  +D+ +  ++PGMLKSHYAP + VRL A
Sbjct: 179 IKV-CDKNIYLLRPGGVTAEEIEEVAGQPLK-QLDQRAAIEAPGMLKSHYAPNALVRLNA 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I   ENAI  LNLS++G+L+EAAF+LF+YMK  D      IA  
Sbjct: 237 QKVESDEALLAFGPKRIVGAENAISILNLSESGQLEEAAFHLFDYMKQLDSLKVRCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
           SIP +GLG+AIN+RL RAAAPR +
Sbjct: 297 SIPFYGLGVAINDRLMRAAAPRGK 320


>gi|163761038|ref|ZP_02168116.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43]
 gi|162281819|gb|EDQ32112.1| hypothetical protein HPDFL43_03344 [Hoeflea phototrophica DFL-43]
          Length = 323

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/323 (49%), Positives = 220/323 (68%), Gaps = 3/323 (0%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI++++D N LR A E L  G  +A+PTETVYGLA D+ NP+AI  +YE K RP  NPLI
Sbjct: 3   QILTVSDPNTLRAAVEALRRGEAVAVPTETVYGLAADATNPSAITAIYEAKGRPRFNPLI 62

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HVSD+ M + H    PL+  LA  FWPGPLTLVL L     IH L+TA L+TA  R+P 
Sbjct: 63  SHVSDMDMARAHVLFTPLAEKLAAAFWPGPLTLVLPLNPDGGIHELATAGLETAAVRIPE 122

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
           GF + LI+++G PLA PSANRSG+IS T+ +H+ +  +   I L++DGG  ++G+ESTI+
Sbjct: 123 GFARTLIKSFGGPLAAPSANRSGRISPTSARHV-ADDLDGRINLVLDGGPCRVGVESTIL 181

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
            V  +K + +LRPGG+ ++ ++ A  V ++    D  ++  +PGMLKSHYAP + +RL A
Sbjct: 182 AVNGDK-LTLLRPGGIPVDAIETAAGVAVDRPGPDAQTSVIAPGMLKSHYAPDAALRLNA 240

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V P EA+++FG  P+   + A + L+LS  G L+EAA NLF+ +K AD S A+ IA +
Sbjct: 241 TSVLPGEAILQFGGKPLDGQDKASLVLDLSPLGDLREAAANLFSMLKRADASQATGIAVA 300

Query: 301 SIPNHGLGIAINNRLERAAAPRN 323
            +P HGLG AIN+RL RAAAPR+
Sbjct: 301 PVPQHGLGEAINDRLNRAAAPRD 323


>gi|295400676|ref|ZP_06810653.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112634|ref|YP_003990950.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1]
 gi|294977257|gb|EFG52858.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217735|gb|ADP76339.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y4.1MC1]
          Length = 351

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 169/326 (51%), Gaps = 18/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +++A ++L AG  +A PTETVYGL  ++++  A+ +++  K RP+ NPLI H++ +  +
Sbjct: 23  QIKEAAQWLKAGEVVAFPTETVYGLGANAKDTKAVEKIFAAKGRPSDNPLIVHIAHVKQL 82

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            +  S  P ++  L + FWPGPLTL+L       I    TA L T   R+P       LI
Sbjct: 83  DEIVSDVPRIAGMLIERFWPGPLTLILPKKEGV-ISDKVTAGLSTVAVRMPDHPVALALI 141

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G PLA PSAN SG+ S T   H+ +  +   I  I+DGG + IG+EST+++   +  
Sbjct: 142 EESGLPLAAPSANISGRPSPTTAAHVFTD-LNGRIVGIVDGGETGIGVESTVLDCTSDVP 200

Query: 189 VRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L++ I          DE  TP+SPGM  +HYAP+S +         L
Sbjct: 201 -TILRPGGVTKEALEQVIGNVAVDSALTDERQTPKSPGMKYTHYAPKSPMAIVQGSPAFL 259

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    R    + G +  +      +A + L       L+  A  L++ ++  D++   
Sbjct: 260 QTLVNQQRALGKKVGVMTTEENCLFYDADVVLTCGSRHDLRTVASRLYDTLRQFDETDVD 319

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S P  G+G AI NRL +AA  
Sbjct: 320 FIYSESFPAEGIGAAIMNRLRKAAGH 345


>gi|196249769|ref|ZP_03148465.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16]
 gi|196210645|gb|EDY05408.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. G11MC16]
          Length = 345

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/329 (36%), Positives = 176/329 (53%), Gaps = 16/329 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +++A E+L  G  IA PTETVYGL  D+ N TA+ +++  K RP+ NPLI HV+  + V
Sbjct: 20  QIQEAAEWLRTGEVIAFPTETVYGLGADAANTTAVEKIFAAKGRPSDNPLIVHVASRAQV 79

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   AS+ P++  L + FWPGPLTLVL       +    TA L T   R+P       LI
Sbjct: 80  ESIAASIPPVAKTLMERFWPGPLTLVLPKRDGA-VSERVTAGLSTVAVRMPDHPLALALI 138

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++   E  
Sbjct: 139 EASGLALAAPSANRSGRPSPTTAAHVL-ADLNGRIAGVIDGGPTGVGVESTVLDCSGEVP 197

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR--------LRA 240
             ILRPGG+  E L   I    E   DE + P++PGM  +HYAP++ +         L+ 
Sbjct: 198 -TILRPGGVTKEALSEVIGRVEEAAGDEQTAPKAPGMKYTHYAPKAPLWIAAGPPSFLQR 256

Query: 241 IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           +    R      G +  +  +N   A + L      +L+  A  L++ ++  D++G + I
Sbjct: 257 LVDESRAEGKTVGVLTTEENKNRYVADVVLACGARRELETVAQRLYDVLRQFDETGVNLI 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
              + P  G+G AI NRL +AA  R  S+
Sbjct: 317 YSEAFPEEGIGAAIMNRLRKAAGGRVISE 345


>gi|316932620|ref|YP_004107602.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris
           DX-1]
 gi|315600334|gb|ADU42869.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris
           DX-1]
          Length = 332

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/326 (43%), Positives = 191/326 (58%), Gaps = 11/326 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           + ++ TD++   +A   L  G  +A PTETVYGL  D+ N  A+ RLY  K RP+ NPLI
Sbjct: 12  KTLTATDAD---EAVRALRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLI 68

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV+D+   +  A  D  +L LA+ FWPGPLTLVL   +   +  L+TA L +   RVP 
Sbjct: 69  AHVADLDAARLIARFDTAALRLAETFWPGPLTLVLPKATNCSVCDLATAGLDSVALRVPS 128

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L+  +G P+  PSANRSG +S T   H+ ++ +   I +I+DGG   +G+ESTI
Sbjct: 129 HPVAQALLRAFGGPVVAPSANRSGHVSPTTAAHV-AADLGGRIDVIVDGGPVMVGVESTI 187

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQV 236
           V       +  LRPGG+  E ++R +  +L       + +   P +PGML SHYAPR+ V
Sbjct: 188 VGCLGAPVL--LRPGGVPREAIERVLGHKLGAPAATNITDDHAPLAPGMLASHYAPRATV 245

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           RL A  V P EAL+ FG+      E A+   NLS  G L EAA  LF  ++  D+ GA  
Sbjct: 246 RLNAAEVKPGEALLAFGSELPPGAETAVAVHNLSPRGDLAEAAAQLFGALRALDERGARG 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322
           IA  SIP+HGLG AIN+RL RAAAPR
Sbjct: 306 IAVMSIPHHGLGEAINDRLRRAAAPR 331


>gi|239828601|ref|YP_002951225.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. WCH70]
 gi|239808894|gb|ACS25959.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. WCH70]
          Length = 348

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/344 (32%), Positives = 178/344 (51%), Gaps = 22/344 (6%)

Query: 3   IMSITDSNAL----RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           + +I D  ++    ++A + L +G  +A PTETVYGL  ++++  A+ +++  K RP+ N
Sbjct: 8   VDNIVDKQSIYPQVKEAAQLLKSGEVVAFPTETVYGLGANAKDAKAVEKIFAAKGRPSDN 67

Query: 59  PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI H++ +  +++  S +  ++  L K FWPGPLTLVL       I    TA L T   
Sbjct: 68  PLIVHIAHLKQLEEMVSAIPDVAHTLIKRFWPGPLTLVLPKKEGV-ISDPVTAGLPTVAV 126

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       LIE  G PLA PSAN SG+ S T   H+  + +   I  I+DGG + IG+
Sbjct: 127 RMPAHPVALALIEASGLPLAAPSANISGRPSPTTAAHVF-ADLNGRIAGIVDGGETGIGV 185

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234
           EST+++    K   ILRPGG+  E L++ I          DE  TP+SPGM  +HYAP+S
Sbjct: 186 ESTVLDCTT-KVPTILRPGGVTKEALEKVIGNVFVDSALTDERQTPKSPGMKYTHYAPKS 244

Query: 235 QV--------RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLF 283
            +         L+ +    R    + G +  +      +A + L       L   A +L+
Sbjct: 245 PMAIVQGSPAFLQTLVNKQRTLGKKVGVLTTEENRSFYDADVVLACGSRHDLHTVASHLY 304

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           + ++  D++    I   S P  G+G AI NRL++AA  +   ++
Sbjct: 305 DTLRKFDETDVDFIYSESFPTEGIGEAIMNRLKKAAGHQVIDEK 348


>gi|319898590|ref|YP_004158683.1| hypothetical protein BARCL_0418 [Bartonella clarridgeiae 73]
 gi|319402554|emb|CBI76099.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 320

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/324 (47%), Positives = 212/324 (65%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+ + +S A+++A   L  G  +A+PTETVYGLA D+ +  A+  ++  K RP  NPL
Sbjct: 1   MMILPL-NSEAIKQAVTILQQGKLVALPTETVYGLAGDATDGKAVASIFSTKGRPPFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVSDI M + +  +D LS  L + FWPGPLT+VL L    +IHPL+TA L T   R P
Sbjct: 60  IVHVSDIVMAECYVEIDLLSRRLMEAFWPGPLTVVLPLKVHHNIHPLTTAGLNTLAVRFP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G   +++  +G PLA PSAN+SG++S T+   + +S +   +PLIIDGG SKIGLESTI
Sbjct: 120 RGGFAEIVRHFGRPLAAPSANQSGKLSPTSATSVFTS-LGTSVPLIIDGGDSKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + + C++ V ILRPGGL IE ++R     ++  +D+    ++PGML+SHYAP + VRL  
Sbjct: 179 IKI-CDENVYILRPGGLAIEEIERVAKKSVKR-LDQQVAIEAPGMLRSHYAPDTSVRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I+  ENAI  LNLS+TG+L+EAAF+LF YM+  D      IA  
Sbjct: 237 KRVESGEALLAFGPKRIEGFENAIAVLNLSETGRLEEAAFHLFQYMQELDSLKVKCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP +GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPFYGLGEAINDRLTRAAAPKGK 320


>gi|49475221|ref|YP_033262.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1]
 gi|49238026|emb|CAF27233.1| hypothetical protein BH04240 [Bartonella henselae str. Houston-1]
          Length = 320

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/324 (46%), Positives = 217/324 (66%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+   +S ++++A   L+ G  +A+PTETVYGLA D+ N  AI  ++  K+RP  NPL
Sbjct: 1   MTILPF-NSASVKEAVALLEQGRLVALPTETVYGLAGDATNGNAIASIFLTKRRPKFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVS I M +++  +D LS HL ++FWPGPLT VL L +  +IHPL+T+ L T   R P
Sbjct: 60  IAHVSSIFMAERYVEIDFLSRHLMEVFWPGPLTFVLPLKAQHNIHPLTTSGLNTLAVRFP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             F  ++++ +G PLA PSAN+SG +S T+ + +  +S+ + +PLI+DGG SKIGLESTI
Sbjct: 120 DSFFAEVVKCFGRPLAAPSANQSGHLSPTSAEAVW-ASLGESVPLILDGGFSKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + V  ++ + +LRPGG+  E ++      L+  +D+ +  ++PGMLKSHYAP + VRL  
Sbjct: 179 IKV-SDENIYLLRPGGIAAEDIEEVAGKSLKR-IDQRAAIEAPGMLKSHYAPNAAVRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I  +ENA+  LNLS++G+L+EAAF+LF YM+  D     SIA  
Sbjct: 237 QKVEHGEALLAFGIKRIMGVENAVSVLNLSESGQLEEAAFHLFQYMRQLDSLKVRSIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP++GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPSYGLGEAINDRLIRAAAPKGK 320


>gi|212640537|ref|YP_002317057.1| putative translation factor (SUA5) [Anoxybacillus flavithermus WK1]
 gi|212562017|gb|ACJ35072.1| Putative translation factor (SUA5) [Anoxybacillus flavithermus WK1]
          Length = 355

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/332 (31%), Positives = 171/332 (51%), Gaps = 19/332 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A  +L  G  +A PTETVYGL  ++ +  A+  ++  K RP+ NPLI H++    +
Sbjct: 28  QVTQAAAYLQRGELVAFPTETVYGLGANAMSTAAVENIFVAKGRPSDNPLIVHIATTEQL 87

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
              A  + P++  L + FWPGPLTLVL       + P  TA L T   R+P       LI
Sbjct: 88  HDIACDIPPVAYTLIEHFWPGPLTLVLP--KKEVVSPRVTAGLNTVAVRMPNHPIALALI 145

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+A PSANRSG+ S T  KH+L   +   I  I+DGG + +G+EST+++      
Sbjct: 146 KASGLPIAAPSANRSGRPSPTTAKHVL-DDLNGRIAAIVDGGPTGVGVESTVIDCTTTIP 204

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETST-PQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E +++ I  V+++  + E    P+SPGM  +HYAP++ +         L
Sbjct: 205 -TILRPGGVTKEDIEQVIGVVDIDRALVEKEAVPKSPGMKYTHYAPKAPLVVVHGSSTFL 263

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    R    + G +  +       A + +   +   L+  A  L++ ++  D +   
Sbjct: 264 QQLVTEKRANGFKVGVLTTEEGRHTYEADVVIPCGRRDDLRTVAQQLYDALRTFDQTNVD 323

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
            I   + PN G+G+AI NRL +AA      ++
Sbjct: 324 MIYSEAFPNEGIGVAIMNRLLKAAGHEQMMEK 355


>gi|289435803|ref|YP_003465675.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172047|emb|CBH28593.1| Sua5/YciO/YrdC/YwlC family protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 345

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 171/330 (51%), Gaps = 19/330 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E L  G  +A PTETVYGL  D+ N  AI+++YE K RP+ NPLI H++    +  
Sbjct: 19  QQAAELLRNGECVAFPTETVYGLGADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDA 78

Query: 73  H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
             AS    ++ L + FWPGPLT++L L   + +    +A L T   R+P       LI+ 
Sbjct: 79  FVASYPQKAIKLMEKFWPGPLTVILPLKKDS-LASNVSAGLSTVGVRMPEHPVSLALIKE 137

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+A PSANRSG+ S T+  H++   +  ++  IIDGG + +GLEST+++   E  V 
Sbjct: 138 AGIPVAAPSANRSGKPSPTSASHVI-EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV- 195

Query: 191 ILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---------- 238
           ILRPGG+  E +++ I  VEL      ET  P++PGM  +HYAP++ V L          
Sbjct: 196 ILRPGGITKEQIEQVIGSVELANNDTKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQK 255

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
               +    ++  I      +  +    ++        ++E A  L+  ++  D +    
Sbjct: 256 EINKVEAAHKKLGILATKELLDGLTTNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDI 315

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           I     P   LG A+ NRLE+AA  R  S+
Sbjct: 316 IFAEVYPETELGAAVMNRLEKAAGNRRISE 345


>gi|319406928|emb|CBI80565.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 320

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/324 (46%), Positives = 212/324 (65%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+   ++ A+ +A   L  G  +A+PTETVYGLA D+ N  A+  ++  K RP  NPL
Sbjct: 1   MAILPFNNA-AINQAVAILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVSDI M + +  +D LS  L + FWPGPLT+VL L +  +IHPL+TA L T   R P
Sbjct: 60  IVHVSDIVMAECYVKIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G   ++I  +G PLA PSAN+SG++S T+   + +S +   +PLIIDGG SKIGLESTI
Sbjct: 120 KGGFVEVIRHFGRPLAAPSANQSGKLSPTSALSVFTS-LGTSVPLIIDGGDSKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + + C++ + +LRPGGL IE +++     ++  +D+ +  ++PGMLKSHYAP + +RL  
Sbjct: 179 IKI-CDENIYLLRPGGLAIEEIEKVAKKSVKR-LDQKTAIEAPGMLKSHYAPNTSMRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I+ +ENA+  LNLS +G+L+EAAF+LF YM+  D      IA  
Sbjct: 237 KKVKSGEALLAFGPKRIEGVENAVAVLNLSTSGRLEEAAFHLFQYMQQLDSLKVKCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP +GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGK 320


>gi|49473987|ref|YP_032029.1| hypothetical protein BQ03430 [Bartonella quintana str. Toulouse]
 gi|49239490|emb|CAF25843.1| hypothetical protein BQ03430 [Bartonella quintana str. Toulouse]
          Length = 320

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 150/324 (46%), Positives = 211/324 (65%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+ + +++ ++KA   L+ G  +A+PTETVYGLA D+ N  A+  ++  K+RP  NPL
Sbjct: 1   MTILPLNNAS-IKKAVALLEQGKLVALPTETVYGLAGDATNGRAVASIFFTKRRPKFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVS I M + +  +D LS  L ++FWPGPLTLVL L +  +IHPL+T+ L T   R P
Sbjct: 60  IAHVSGIVMAEHYVEIDFLSRRLMEVFWPGPLTLVLPLKAHHNIHPLTTSGLNTLAIRFP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +++E +G PLA PSAN+SG IS T+   +  + + + +PLI+DGG  KIGLESTI
Sbjct: 120 DSRFAEVVERFGRPLAAPSANQSGCISPTSAGAVF-AFLGESVPLILDGGACKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V V C + + +LRPGGL  E ++      L+  +D+ +  ++PGMLKSHYAP + VRL  
Sbjct: 179 VKV-CGESIYLLRPGGLAAEEIEAVAGKSLKR-LDQQAAIEAPGMLKSHYAPNAMVRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I  +ENA+  LNLS++G+L+EAA +LF YMK  D      IA  
Sbjct: 237 QKVKHGEALLAFGRKRIMGVENAVSVLNLSESGQLEEAASHLFEYMKQLDSLKVKYIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP++GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPSYGLGEAINDRLIRAAAPKEK 320


>gi|313622340|gb|EFR92826.1| protein Sua5 [Listeria innocua FSL J1-023]
          Length = 345

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 121/342 (35%), Positives = 181/342 (52%), Gaps = 20/342 (5%)

Query: 2   QIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +I     SN + +KA E L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPL
Sbjct: 7   KINKQQSSNLIYQKAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPL 66

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    + +  AS  P +L L + FWPGPLT++L L   + +    +A L T   R+
Sbjct: 67  IVHIAKREQMDQFIASYPPKALQLMEAFWPGPLTVILPLKKDS-LAANVSAGLSTVGVRM 125

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +LI T   P+A PSANRSG+ S T  +H++   +  E+  IIDGG + +GLES
Sbjct: 126 PEHPVSLELIATANIPIAAPSANRSGKPSPTTAEHVI-EDLDGEVAGIIDGGPTGVGLES 184

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236
           T+++   +  + ILRPGG+  E +++ I         V ET  P++PGM  +HYAP++ V
Sbjct: 185 TVIDCSLDVPI-ILRPGGITKEQIEQVIGTVDLSTNSVTETEKPKAPGMKYTHYAPKAPV 243

Query: 237 RLRAIHVNPRE--------ALIRFGNVPIKNIENAII-SLNLSKTGKLK---EAAFNLFN 284
            L        +        A  + G +  K + + +  S  +  TG +K   E A +L+ 
Sbjct: 244 YLVEGSSQFWQSEINKVETAGKKLGILATKELTSKLATSAVIQPTGSIKAMDEIATSLYK 303

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            ++  D +    I     P   LG AI NRLE+AA  R  S+
Sbjct: 304 GLRAFDHADVDIIFAEVYPETELGAAIMNRLEKAAGNRRISE 345


>gi|222147737|ref|YP_002548694.1| hypothetical protein Avi_0976 [Agrobacterium vitis S4]
 gi|221734725|gb|ACM35688.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 323

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 159/316 (50%), Positives = 213/316 (67%), Gaps = 2/316 (0%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +   A+R A   L+AG  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICHV+D
Sbjct: 10  SPEPAIRAALPLLEAGEVIAMPTETVYGLAADATNPQAITRIYETKGRPQFNPLICHVAD 69

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           ++M + +   DPLS  LA+ FWPGPLTL++ L     IHPL+TA L T   R+P GF  +
Sbjct: 70  LAMAEHYGVFDPLSRQLAERFWPGPLTLIVPLAPDCAIHPLATAGLDTVGLRMPLGFAAE 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI  +G PLA PSAN SG+IS T   H+    +  +IPLI+D   + +G+ESTI+ V+ +
Sbjct: 130 LIAAFGKPLAAPSANTSGKISPTTAAHV-EEDLGAKIPLILDAEAAGVGVESTILKVE-D 187

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            ++++LRPGGL +E ++ A  + +       +  ++PGML SHYAP + VRL    V   
Sbjct: 188 GQIQLLRPGGLSVEAVEEATGLRVIRPQKAGAIIEAPGMLASHYAPEAAVRLNVTSVYAD 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EA+I FG+   + +E A + LNLS +G L EAA NLF++MK AD SGA+ IAF++IP HG
Sbjct: 248 EAVITFGSAVPQGLEKAALVLNLSASGDLTEAAANLFSFMKRADASGAARIAFTAIPTHG 307

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RLERAAAPR
Sbjct: 308 LGDAINDRLERAAAPR 323


>gi|16801746|ref|NP_472014.1| hypothetical protein lin2685 [Listeria innocua Clip11262]
 gi|16415221|emb|CAC97911.1| lin2685 [Listeria innocua Clip11262]
          Length = 345

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/330 (36%), Positives = 176/330 (53%), Gaps = 19/330 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +KA E L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++    + +
Sbjct: 19  QKAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAKREQMDQ 78

Query: 73  H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
             AS  P +L L + FWPGPLT++L L   + +    +A L T   R+P      +LI T
Sbjct: 79  FIASYPPKALQLMEAFWPGPLTVILPLKKDS-LAANVSAGLSTVGVRMPEHPVSLELIAT 137

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSANRSG+ S T  +H++   +  EI  IIDGG + +GLEST+++   +  + 
Sbjct: 138 ANIPIAAPSANRSGKPSPTTAEHVI-EDLDGEIAGIIDGGPTGVGLESTVIDCSLDVPI- 195

Query: 191 ILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE- 247
           ILRPGG+ IE +++ I           ET  P++PGM  +HYAP++ V L        + 
Sbjct: 196 ILRPGGITIEQIEQVIGTVDLSTNSTTETEKPKAPGMKYTHYAPKAPVYLVEGSSQFWQS 255

Query: 248 -------ALIRFGNVPIKNIENAII-SLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296
                  A  + G +  K + + +  S  +  TG +K   E A +L+  ++  D +    
Sbjct: 256 EINKVGIAGKKLGILATKELTSKLATSAVIQSTGSIKAMDEIATSLYKGLRAFDHADVDI 315

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           I     P   LG AI NRLE+AA  R  S+
Sbjct: 316 IFAEVYPETELGAAIMNRLEKAAGNRRISE 345


>gi|229176001|ref|ZP_04303497.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3]
 gi|228607494|gb|EEK64820.1| hypothetical protein bcere0006_50710 [Bacillus cereus MM3]
          Length = 347

 Score =  365 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 113/332 (34%), Positives = 173/332 (52%), Gaps = 19/332 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++   E  
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSEVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
            I   S PN G+G AI NRL +AA  +  ++ 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQVITES 347


>gi|319405355|emb|CBI78972.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 320

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 151/324 (46%), Positives = 210/324 (64%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+   +S A+ +A   L  G  +A+PTETVYGLA D+ N  A+  ++  K RP  NPL
Sbjct: 1   MAILPF-NSAAINQAVTILQQGQLVALPTETVYGLAGDATNGKAVASIFSTKGRPFFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVSDI M + +  +D LS  L + FWPGPLT+VL L +  +IHPL+TA L T   R P
Sbjct: 60  IVHVSDIVMAECYVKIDFLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAVRFP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G   ++I  +G PLA PSAN+SG++S T+   +  S +   +PLIIDGG SKIGLESTI
Sbjct: 120 KGGFAEVIRHFGRPLAAPSANQSGKLSPTSAISVFKS-LGTLVPLIIDGGASKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + + C++ V +LRPGGL IE + +     ++  +D+ +  ++PGMLKSHYAP + +RL  
Sbjct: 179 IKI-CDENVYLLRPGGLAIEEIAKVAKKPVKR-LDQQAAIEAPGMLKSHYAPNTSMRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   ++ +ENA+  LNLS++G+L+EAAF+LF YM+  D      IA  
Sbjct: 237 KKVESGEALLAFGPKRVEGVENAVAVLNLSESGRLEEAAFHLFQYMQQLDLPKVKCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP +GLG AIN+RL RAAA + +
Sbjct: 297 PIPFYGLGEAINDRLIRAAAAKGK 320


>gi|89095606|ref|ZP_01168500.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911]
 gi|89089352|gb|EAR68459.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. NRRL B-14911]
          Length = 346

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 106/335 (31%), Positives = 168/335 (50%), Gaps = 18/335 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + S+ D   +++A   L     +A PTETVYGL  ++RN  A+++++E K RP+ NPLI 
Sbjct: 12  VDSLNDYPQIKQAAALLAQNETVAFPTETVYGLGGNARNDEAVKKIFEAKGRPSDNPLII 71

Query: 63  HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H++D   ++     V   +  L + FWPGPLT++ +      +   +TA L T   R+P 
Sbjct: 72  HIADREQLEGIVESVPASADKLMEAFWPGPLTIIFNKKDG-QLSETATAGLNTVGIRMPD 130

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 ++   G P+A PSANRSG+ S T   H+    +   I  I+DGG + +G+EST+
Sbjct: 131 HPVALAILRESGVPVAAPSANRSGRPSPTTAGHV-KEDLNGRIAGIVDGGPTGVGVESTV 189

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV-- 236
           ++   E  V ILRPGG+  E L+R +          DE   P+SPGM   HYAP + +  
Sbjct: 190 LDCTGEIPV-ILRPGGVTKEQLERVVGEVAADPALADEKEAPRSPGMKYRHYAPDAPLYI 248

Query: 237 ------RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMK 287
                 R++ +        ++ G +         ++  +    K   L+  A +L+  ++
Sbjct: 249 VEGTRERIQELVNEQHTEGLKAGVLTTAENEKFYDSDFTFICGKRANLETVAASLYEALR 308

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             + SG   I   S P  G+G AI NRL +AA  R
Sbjct: 309 SFNSSGVDVIFSESFPAEGVGEAIMNRLLKAAGHR 343


>gi|239831281|ref|ZP_04679610.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823548|gb|EEQ95116.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum intermedium LMG
           3301]
          Length = 355

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 147/319 (46%), Positives = 196/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HVS I
Sbjct: 40  DDEAVLRAVEVLRRGGLVAIPTETVYGLAADASNGEGVAGIFAAKGRPQFNPLIAHVSGI 99

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL----STTDIHPLSTANLKTACFRVPCGF 123
           +M +++ + D LS  LA++FWPGPLT+VL L     +   IHPL TA L+T   R+P G 
Sbjct: 100 AMAERYVTFDALSRKLAEMFWPGPLTIVLPLKDRQDADRPIHPLVTAGLQTLAIRMPLGR 159

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +IE    P+A PSAN SG+IS T+   +    +   + LI+D G   +G+ESTIV V
Sbjct: 160 VRDIIEGLDSPVAAPSANTSGRISPTSASAVAGD-LGNRLDLILDAGPCGVGVESTIVKV 218

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
              K V +LRPGGL  E ++  I  +L    D TS  Q+PGM+ SHYAP + +RL    V
Sbjct: 219 DGNK-VHLLRPGGLAAEEIEAVIGEKL-VRADHTSAIQAPGMMASHYAPDAAMRLDVGSV 276

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P E L+ FG   +   E A   +NLS  G L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 277 QPGEVLLAFGPQRVAGAEGAATVMNLSANGNLREAAANLFDFMRRLDATGAATIAVEPIP 336

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 337 FDGLGEAINDRLKRAAAPR 355


>gi|228994044|ref|ZP_04153945.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM
           12442]
 gi|228765692|gb|EEM14345.1| hypothetical protein bpmyx0001_47670 [Bacillus pseudomycoides DSM
           12442]
          Length = 347

 Score =  364 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 114/329 (34%), Positives = 165/329 (50%), Gaps = 19/329 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 17  DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 76

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +K     +  ++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 77  SQLKGIVRGIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   
Sbjct: 135 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTS 193

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           E    ILRPGG+  E L+  I  V L+  + DE   P++PGM  +HYAP++ + +     
Sbjct: 194 EVP-TILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 252

Query: 244 NPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
           +  + LI                  ++   A + L+      L   A  L++ ++  D S
Sbjct: 253 DFIQQLIDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDAS 312

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321
               I   S PN G+G AI NRL +AA  
Sbjct: 313 KVDVIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|42784497|ref|NP_981744.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987]
 gi|42740429|gb|AAS44352.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus ATCC 10987]
          Length = 346

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 112/331 (33%), Positives = 172/331 (51%), Gaps = 19/331 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLESVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +     +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLADEKKEEGFKVGVLTTEEYQHVYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            I   S PN G+G AI NRL +AA  +  ++
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITE 346


>gi|324329274|gb|ADY24534.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 346

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 113/331 (34%), Positives = 172/331 (51%), Gaps = 19/331 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEQLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G +     +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            I   S PN G+G AI NRL +AA  +  ++
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITE 346


>gi|229118821|ref|ZP_04248170.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3]
 gi|228664622|gb|EEL20115.1| hypothetical protein bcere0017_50860 [Bacillus cereus Rock1-3]
          Length = 342

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 164/326 (50%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A   L     +A PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 16  QLQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 75

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 76  DGIVNEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E  
Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIP 192

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV---------- 236
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +          
Sbjct: 193 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 251

Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
            RL     +    +        +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 252 QRLVDKKKDEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASEVD 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 312 VIFSESFPNDGIGNAIMNRLTKAAGH 337


>gi|229105918|ref|ZP_04236542.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28]
 gi|228677492|gb|EEL31745.1| hypothetical protein bcere0019_50420 [Bacillus cereus Rock3-28]
          Length = 342

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 163/326 (50%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A   L     +A PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 16  QLQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 75

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 76  DGIVNEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E  
Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIP 192

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV---------- 236
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +          
Sbjct: 193 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSRKFI 251

Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
            RL          +        +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 252 QRLVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASEVD 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 312 VIFSESFPNDGIGNAIMNRLTKAAGH 337


>gi|229076540|ref|ZP_04209500.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18]
 gi|229099758|ref|ZP_04230683.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29]
 gi|228683647|gb|EEL37600.1| hypothetical protein bcere0020_49760 [Bacillus cereus Rock3-29]
 gi|228706573|gb|EEL58786.1| hypothetical protein bcere0024_49790 [Bacillus cereus Rock4-18]
          Length = 342

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 164/326 (50%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A   L     +A PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 16  QLQEAARLLRENEAVAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 75

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 76  DGIVNEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E  
Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEIP 192

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV---------- 236
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +          
Sbjct: 193 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 251

Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
            RL     +    +        +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 252 QRLVDKKKDEGFKVGVLTTEEYQHVYSADVVLSCGMRSDLASVATKLYDVLRTFDASEVD 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 312 VIFSESFPNDGIGNAIMNRLTKAAGH 337


>gi|229014495|ref|ZP_04171613.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048]
 gi|229064976|ref|ZP_04200274.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603]
 gi|229136144|ref|ZP_04264897.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196]
 gi|229170033|ref|ZP_04297725.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621]
 gi|228613458|gb|EEK70591.1| hypothetical protein bcere0007_49700 [Bacillus cereus AH621]
 gi|228647303|gb|EEL03385.1| hypothetical protein bcere0014_50170 [Bacillus cereus BDRD-ST196]
 gi|228716277|gb|EEL67989.1| hypothetical protein bcere0026_50330 [Bacillus cereus AH603]
 gi|228746845|gb|EEL96730.1| hypothetical protein bmyco0001_48980 [Bacillus mycoides DSM 2048]
          Length = 346

 Score =  363 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 168/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A   L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVREIPPVAEKLMEHFWPGPLTIILPRKKG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E  
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    ++   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QRIVDEKKKEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|229000111|ref|ZP_04159681.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17]
 gi|228759648|gb|EEM08624.1| hypothetical protein bmyco0003_46640 [Bacillus mycoides Rock3-17]
          Length = 343

 Score =  363 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 113/329 (34%), Positives = 166/329 (50%), Gaps = 19/329 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 13  DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 72

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +K     +  ++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 73  SQLKGIVREIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   
Sbjct: 131 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTS 189

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV------- 236
           E    ILRPGG+  E L+  I  V L+  + DE   P++PGM  +HYAP++ +       
Sbjct: 190 EVP-TILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 248

Query: 237 -RLRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
             ++ +    ++     G +  +       A + L+      L   A  L++ ++  D S
Sbjct: 249 DFIQQLVDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDAS 308

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321
               I   S PN G+G AI NRL +AA  
Sbjct: 309 KVDVIFSESFPNEGIGNAIMNRLTKAAGH 337


>gi|229020544|ref|ZP_04177289.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273]
 gi|229026765|ref|ZP_04183097.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272]
 gi|228734488|gb|EEL85150.1| hypothetical protein bcere0029_50320 [Bacillus cereus AH1272]
 gi|228740764|gb|EEL91017.1| hypothetical protein bcere0030_50250 [Bacillus cereus AH1273]
          Length = 346

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A   L     +A PTETVYGL  ++ +  AI +++  K RP+ NPLI H+   S +
Sbjct: 20  QLKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFAAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVREIPPVAEKLMEHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E  
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    ++   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QRIVDEKKKEGFKVGVLTTEEYQHVYSADVVLSCGMRNDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|163943013|ref|YP_001647897.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis
           KBAB4]
 gi|163865210|gb|ABY46269.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 346

 Score =  363 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A   L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLKEAARLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVREIPPVAEKLMEHFWPGPLTIILPRKKG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   E  
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSEVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGNVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    ++   + G +  +    + +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QRIVDEKKKEGFKVGVLTTEEYQRVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|39934152|ref|NP_946428.1| SUA5/yciO/yrdC domain-containing protein [Rhodopseudomonas
           palustris CGA009]
 gi|39648000|emb|CAE26520.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Rhodopseudomonas
           palustris CGA009]
          Length = 348

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/308 (45%), Positives = 177/308 (57%), Gaps = 7/308 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A PTETVYGL  D+ N  A+ RLY  K RP+ NPLI HV+D+   +  A  D 
Sbjct: 43  LRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDA 102

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +L LA+ FWPGPLTLVL   +   +  L+TA L +   R+P     + L+  +  P+  
Sbjct: 103 AALRLAEAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFDGPVVA 162

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG +S T   H+ +S +   I +I+DGG   +G+ESTIV+      +  LRPGGL
Sbjct: 163 PSANRSGHVSPTTAAHV-ASDLDGRIDVIVDGGPVMVGVESTIVSCLGAPVL--LRPGGL 219

Query: 198 EIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
             E ++R +   L       S    P +PGML SHYAPR+ VRL A  V P EAL+ FG 
Sbjct: 220 PREAIERVLDQALGTPTTNNSDDHAPVAPGMLASHYAPRALVRLNATEVKPGEALLAFGP 279

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
                 E A    NLS  G L EAA +LF  ++  DD GA  IA   IP HGLG AIN+R
Sbjct: 280 ELPPGAETAAAVHNLSPRGDLTEAAAHLFGALRALDDRGARGIAVMPIPFHGLGEAINDR 339

Query: 315 LERAAAPR 322
           L RAAAPR
Sbjct: 340 LRRAAAPR 347


>gi|152977511|ref|YP_001377028.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026263|gb|ABS24033.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 347

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 110/329 (33%), Positives = 162/329 (49%), Gaps = 19/329 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A + L     +A PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 17  DYPQLQEAAKLLRENEAVAFPTETVYGLGANAMNDEAIVKIFEAKGRPSDNPLIVHIGSK 76

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +      V P++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 77  SQLTDIVREVPPVAEVLMKHFWPGPLTIILP--KKDGISEKVTAGLDTVGVRMPDHEVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   
Sbjct: 135 ALIEAANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTS 193

Query: 186 EKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            K   ILRPGG+  E L+  I          DE   P++PGM  +HYAP++ + +     
Sbjct: 194 -KVPTILRPGGITKEQLEEVIGPVSFDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 252

Query: 244 NPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
           +  + L+                  +++  A + L+      L   A  L++ ++  D S
Sbjct: 253 DFIQQLVEKKKREGYTVGVLTTEEYQHVYQADVVLSCGLRRDLASVATKLYDVLRTFDTS 312

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321
               I   S PN G+G AI NRL +AA  
Sbjct: 313 KVDCIFSESFPNEGIGNAIMNRLIKAAGH 341


>gi|229164273|ref|ZP_04292206.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803]
 gi|228619213|gb|EEK76106.1| hypothetical protein bcere0009_50340 [Bacillus cereus R309803]
          Length = 347

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 169/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QIQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGIRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|240850071|ref|YP_002971464.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii
           as4aup]
 gi|240267194|gb|ACS50782.1| translation factor, Sua5/YciO/YrdC family [Bartonella grahamii
           as4aup]
          Length = 320

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 148/324 (45%), Positives = 216/324 (66%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+ + +S ++R+A   L+ G  +A+PTETVYGLA D+ N  AI  ++  K RP +NPL
Sbjct: 1   MTILPL-NSASIREAIALLEQGKLVALPTETVYGLAGDATNGRAISSIFSTKGRPQINPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVS I M +++  +D LS  L + FWPGPLTLVL L    +IHPL+T+ L T   R P
Sbjct: 60  IAHVSGIEMAERYVKIDFLSRQLMEEFWPGPLTLVLPLKEQHNIHPLTTSGLNTLAVRFP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                ++++ +G PLA PSAN+SG++S T+ + +  +S+ + +PLI+DGG +KIGLESTI
Sbjct: 120 DSLFAEVVQHFGRPLAAPSANQSGRLSPTSAEAVF-ASLGESVPLILDGGPAKIGLESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + + C++ + +LRPGGL  + ++  +   L+  +D+ +  ++PGMLKSHYAP + +RL  
Sbjct: 179 IKI-CDENIYLLRPGGLAADKIEEVVGKSLKR-IDQRAAIEAPGMLKSHYAPNATIRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG+  +   ENA+  LNLS+ GKL+EAAF+LF YMK  D      IA  
Sbjct: 237 EKVENGEALLAFGSKRVMGAENAVSILNLSEDGKLEEAAFHLFQYMKELDSFKVRCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP++GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPSYGLGEAINDRLIRAAAPKEK 320


>gi|319403916|emb|CBI77504.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 320

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 148/324 (45%), Positives = 211/324 (65%), Gaps = 4/324 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+   ++ A+ +A      G  +A+PTETVYGLA D+ N  A+  ++  K RP  NPL
Sbjct: 1   MTILPFNNA-AINQAVAIFQQGQLVALPTETVYGLAGDATNGKAVASIFSTKARPLFNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVSDI M + +  +D LS  L + FWPGPLT+VL L +  +IHPL+TA L T   R P
Sbjct: 60  IVHVSDIVMAECYVKIDLLSRRLMEAFWPGPLTVVLPLKAHHNIHPLTTAGLNTLAIRSP 119

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            G   ++I  +G PLA PSAN+SG++S T+   + +S +   +PLIIDGG SKIG+ESTI
Sbjct: 120 KGGFAEVIRHFGRPLAAPSANQSGKLSPTSALSVFTS-LGTSVPLIIDGGASKIGIESTI 178

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + + C++ + +LRPGGL IE +++     ++  +++ +  ++PGMLKSHYAP + +RL  
Sbjct: 179 IKI-CDENIYLLRPGGLAIEEIEKVAKKSVKR-LEQQTAIEAPGMLKSHYAPNTSMRLNV 236

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   EAL+ FG   I+ +ENA+  LNLS +G+L+EAAF+LF YM+  D      IA  
Sbjct: 237 KKVKSGEALLAFGPKRIEGVENAVAVLNLSTSGRLEEAAFHLFQYMQQLDSLEVKCIAVE 296

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            IP +GLG AIN+RL RAAAP+ +
Sbjct: 297 PIPFYGLGEAINDRLIRAAAPKGK 320


>gi|167636681|ref|ZP_02394969.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442]
 gi|254744456|ref|ZP_05202136.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Kruger
           B]
 gi|167527881|gb|EDR90703.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0442]
          Length = 346

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +    I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|229007631|ref|ZP_04165225.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4]
 gi|228753642|gb|EEM03086.1| hypothetical protein bmyco0002_45100 [Bacillus mycoides Rock1-4]
          Length = 340

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 113/329 (34%), Positives = 166/329 (50%), Gaps = 19/329 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 10  DYPQLQKAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGSK 69

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +K     +  ++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 70  SQLKGIVREIPEVAEVLMKHFWPGPLTIILP--KKEGISEKVTAGLDTVGVRMPDHPVAL 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++   
Sbjct: 128 ALIEEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTS 186

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV------- 236
           E    ILRPGG+  E L+  I  V L+  + DE   P++PGM  +HYAP++ +       
Sbjct: 187 EVP-TILRPGGITKEQLEEVIGTVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 245

Query: 237 -RLRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
             ++ +    ++     G +  +       A + L+      L   A  L++ ++  D S
Sbjct: 246 DFIQQLVDQKKDEGYTVGVLTTEEYQHEYKADVVLSCGVRSDLASVATKLYDVLRTFDAS 305

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321
               I   S PN G+G AI NRL +AA  
Sbjct: 306 KVDVIFSESFPNEGIGNAIMNRLTKAAGH 334


>gi|192289677|ref|YP_001990282.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192283426|gb|ACE99806.1| Sua5/YciO/YrdC/YwlC family protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 326

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/308 (45%), Positives = 178/308 (57%), Gaps = 7/308 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A PTETVYGL  D+ N  A+ RLY  K RP+ NPLI HV+D+   +  A  D 
Sbjct: 21  LRGGGLVAFPTETVYGLGADASNAEAVARLYAAKGRPSFNPLIAHVADLDAARTIARFDA 80

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +L LA+ FWPGPLTLVL   +   +  L+TA L +   R+P     + L+  +G P+  
Sbjct: 81  AALRLAEAFWPGPLTLVLPKQADCSVCDLATAGLDSVAIRIPSHPVAQALLRAFGGPVVA 140

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG +S T   H+ +S +   I +I+DGG   +G+ESTIV+      +  LRPGGL
Sbjct: 141 PSANRSGHVSPTTAAHV-ASDLDGRIDVIVDGGPVMVGVESTIVSCLGAPVL--LRPGGL 197

Query: 198 EIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
             E ++R +   L       +    P +PGML SHYAPR+ VRL A  V P EAL+ FG 
Sbjct: 198 PREAIERVLGQALGTPTTNNADDHAPLAPGMLASHYAPRALVRLNATEVKPGEALLAFGP 257

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
                 E A    NLS  G L EAA +LF  ++  DD GA  IA   IP HGLG AIN+R
Sbjct: 258 ELPPGAETAAAVHNLSPRGDLPEAAAHLFGALRALDDRGARGIAVMPIPFHGLGEAINDR 317

Query: 315 LERAAAPR 322
           L RAAAPR
Sbjct: 318 LRRAAAPR 325


>gi|153007869|ref|YP_001369084.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum anthropi ATCC
           49188]
 gi|151559757|gb|ABS13255.1| Sua5/YciO/YrdC/YwlC family protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 332

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 147/319 (46%), Positives = 200/319 (62%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+++A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HVS I
Sbjct: 17  DDEAVQRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVSGI 76

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M +++ + D LS  LA++FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 77  AMAERYVTFDALSRKLAEMFWPGPLTIVLPLKDRQDTDRPIHPLVTAGLSTLAIRMPLGR 136

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +IE    P+A PSAN SG+IS T+ + + +  +  ++ LI+D G   +G+ESTIV V
Sbjct: 137 VRDIIEGLDSPVAAPSANTSGRISPTSARAV-ADDLGNKLDLILDAGPCGVGVESTIVKV 195

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
              K V +LRPGGL  E ++  I  +L    D TS  Q+PGM+ SHYAP + +RL    V
Sbjct: 196 DGNK-VHLLRPGGLAAEEIEAVIGEKL-VRADHTSAIQAPGMMASHYAPDAAMRLGVGSV 253

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +   + A + +NLS  G L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 254 QPGEALLAFGPQRVAGADTAKVIMNLSADGNLREAAANLFDFMRRLDATGATTIAVEPIP 313

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 314 FEGLGEAINDRLKRAAAPR 332


>gi|300117839|ref|ZP_07055606.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1]
 gi|298724703|gb|EFI65378.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus SJ1]
          Length = 346

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 113/331 (34%), Positives = 171/331 (51%), Gaps = 19/331 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +    I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            I   S PN G+G AI NRL +AA  +  ++
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITE 346


>gi|228988550|ref|ZP_04148637.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771167|gb|EEM19646.1| hypothetical protein bthur0001_52050 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 347

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 112/332 (33%), Positives = 172/332 (51%), Gaps = 19/332 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
            I   S PN G+G AI NRL +AA  +  ++ 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITES 347


>gi|30265348|ref|NP_847725.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames]
 gi|47778411|ref|YP_022236.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188160|ref|YP_031413.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne]
 gi|49480413|ref|YP_039318.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140237|ref|YP_086594.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L]
 gi|65317301|ref|ZP_00390260.1| COG0009: Putative translation factor (SUA5) [Bacillus anthracis
           str. A2012]
 gi|165871252|ref|ZP_02215901.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488]
 gi|170688185|ref|ZP_02879396.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465]
 gi|170709376|ref|ZP_02899789.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389]
 gi|177651870|ref|ZP_02934453.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174]
 gi|206978500|ref|ZP_03239359.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97]
 gi|217962814|ref|YP_002341392.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187]
 gi|218906503|ref|YP_002454337.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820]
 gi|227818088|ref|YP_002818097.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC
           684]
 gi|228917934|ref|ZP_04081470.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930333|ref|ZP_04093337.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228949046|ref|ZP_04111318.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229094437|ref|ZP_04225509.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42]
 gi|229124829|ref|ZP_04254007.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201]
 gi|229142067|ref|ZP_04270592.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26]
 gi|229199451|ref|ZP_04326114.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293]
 gi|229600982|ref|YP_002869540.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248]
 gi|254686252|ref|ZP_05150111.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724247|ref|ZP_05186031.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A1055]
 gi|254735253|ref|ZP_05192962.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755794|ref|ZP_05207826.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Vollum]
 gi|254762134|ref|ZP_05213980.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str.
           Australia 94]
 gi|30260026|gb|AAP29211.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Ames]
 gi|47552116|gb|AAT34711.2| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182087|gb|AAT57463.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. Sterne]
 gi|49331969|gb|AAT62615.1| sua5/yciO/yrdC/ywlC family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51973706|gb|AAU15256.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus E33L]
 gi|164712919|gb|EDR18447.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0488]
 gi|170125724|gb|EDS94638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0389]
 gi|170667878|gb|EDT18630.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0465]
 gi|172082574|gb|EDT67638.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0174]
 gi|206743290|gb|EDZ54738.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus H3081.97]
 gi|217063465|gb|ACJ77715.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH187]
 gi|218539161|gb|ACK91559.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH820]
 gi|227004860|gb|ACP14603.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. CDC
           684]
 gi|228584027|gb|EEK42182.1| hypothetical protein bcere0001_49500 [Bacillus cereus m1293]
 gi|228641356|gb|EEK97662.1| hypothetical protein bcere0013_51530 [Bacillus cereus BDRD-ST26]
 gi|228658620|gb|EEL14282.1| hypothetical protein bcere0016_51090 [Bacillus cereus 95/8201]
 gi|228688974|gb|EEL42801.1| hypothetical protein bcere0021_51420 [Bacillus cereus Rock3-42]
 gi|228810619|gb|EEM56968.1| hypothetical protein bthur0007_51670 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228829319|gb|EEM74952.1| hypothetical protein bthur0010_50120 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841731|gb|EEM86842.1| hypothetical protein bthur0012_51350 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229265390|gb|ACQ47027.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis str. A0248]
          Length = 346

 Score =  362 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +    I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|315230833|ref|YP_004071269.1| YrdC/Sua5 protein [Thermococcus barophilus MP]
 gi|315183861|gb|ADT84046.1| putative YrdC/Sua5 protein [Thermococcus barophilus MP]
          Length = 341

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 116/332 (34%), Positives = 174/332 (52%), Gaps = 23/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  ++ A +F+  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPLI H++  
Sbjct: 12  DNRKIKIAAKFIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIVHIARF 71

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + + A +V   +  LA+ FWPGPLT+VL      ++   +T  L T   R+P      
Sbjct: 72  EQLYELARNVPREAEILAEHFWPGPLTIVLP--KKDNVPKTTTGGLDTVAIRMPAHEIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G P+A PSAN SG+ S T  +H++       I  IIDGG  KIG+EST++++  
Sbjct: 130 NLIKASGRPIAAPSANISGKPSPTLAEHVV-DDFYGRIECIIDGGEVKIGVESTVLDLTT 188

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIH 242
            K   +LRPGGL +E ++R I  +++   V        ++PGM   HYAP +QV +   +
Sbjct: 189 -KPPTLLRPGGLPLEEIERIIGRIKIHPAVKGKTVDIAKAPGMKYKHYAPNAQVIVIEGN 247

Query: 243 VNP------------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                          ++  I+ G +   +   A   +NL      +E A NLF  ++  D
Sbjct: 248 REKVKEKIKELLKEYKKRGIKVGIMATGDFYEADAYVNLG--NSEEEVAKNLFRALRELD 305

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            SG   I    I   GLG+A+ NRL +AA  +
Sbjct: 306 KSGVDVILAEGIEEKGLGLAVMNRLRKAAGYK 337


>gi|301056793|ref|YP_003795004.1| sua5/yciO/yrdC/ywlC family protein [Bacillus anthracis CI]
 gi|300378962|gb|ADK07866.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 346

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +    I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIHNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|229087815|ref|ZP_04219931.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44]
 gi|228695490|gb|EEL48359.1| hypothetical protein bcere0022_43720 [Bacillus cereus Rock3-44]
          Length = 347

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 111/329 (33%), Positives = 164/329 (49%), Gaps = 19/329 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A   L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   
Sbjct: 17  DYPQLQEAARLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGAR 76

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S + +    + P++  L K FWPGPLT++L       I    TA L T   R+P      
Sbjct: 77  SQLGEIVREITPVAEELMKHFWPGPLTIILP--KKDGISEKVTAGLDTVGVRMPDHPVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+V+   
Sbjct: 135 ALIEAANVPVAAPSANRSGRPSPTLAHHVY-EDLNEKIAGIVDGGATGVGVESTVVDCTS 193

Query: 186 EKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           E    ILRPGG+  E L+  I +        DE   P++PGM  +HYAP++ + +     
Sbjct: 194 EVP-TILRPGGITKEQLEEVIGIVSLDPALKDEKEKPKAPGMKYTHYAPKAPLSIVEGSR 252

Query: 244 NPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
           +  + L+                  +++  A + L+      L   A  L++ ++  D S
Sbjct: 253 DFIQQLVDKKKEEGYTVGVLTTEEYQHVYKADVVLSCGVRSDLASVATKLYDVLRTFDAS 312

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321
               I   S PN G+G AI NRL +AA  
Sbjct: 313 EVDVIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|229158887|ref|ZP_04286944.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342]
 gi|228624498|gb|EEK81268.1| hypothetical protein bcere0010_50590 [Bacillus cereus ATCC 4342]
          Length = 347

 Score =  362 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 112/332 (33%), Positives = 172/332 (51%), Gaps = 19/332 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + I    +E   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QLIVDKKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
            I   S PN G+G AI NRL +AA  +  ++ 
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITES 347


>gi|229033958|ref|ZP_04188912.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271]
 gi|228728384|gb|EEL79406.1| hypothetical protein bcere0028_49880 [Bacillus cereus AH1271]
          Length = 346

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 111/331 (33%), Positives = 172/331 (51%), Gaps = 19/331 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DVIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYQHVYSADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            I   S PN G+G AI NRL +AA  +  ++
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGHQIITE 346


>gi|118480360|ref|YP_897511.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam]
 gi|196042389|ref|ZP_03109654.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99]
 gi|118419585|gb|ABK88004.1| translation factor SUA5 [Bacillus thuringiensis str. Al Hakam]
 gi|196026781|gb|EDX65423.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus NVH0597-99]
          Length = 346

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVKGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +    I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASIATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|288554403|ref|YP_003426338.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4]
 gi|288545563|gb|ADC49446.1| sua5/yciO/yrdC/ywlC family protein [Bacillus pseudofirmus OF4]
          Length = 346

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 107/340 (31%), Positives = 166/340 (48%), Gaps = 22/340 (6%)

Query: 1   MQIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
             +  I D +     +  A  ++  G  +A PTETVYGL  ++ +  AI +++E K RP+
Sbjct: 9   FNVDKINDEDKKREYISDAALWISEGEVVAFPTETVYGLGANALDEKAIAKIFEAKGRPS 68

Query: 57  MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
            NPLI H+++   + +    + P +  L + FWPGPLT++        I P  TA L T 
Sbjct: 69  DNPLIVHIANRDQLSELVTEITPAAEKLMEAFWPGPLTIIF--KKKGPIAPNVTAGLDTV 126

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      KLI+    P+A PSAN SG+ S T   H+    +   I  ++DGG + +
Sbjct: 127 AIRMPSHPLALKLIKAANVPVAAPSANLSGKPSPTTAAHVY-HDLQGRIAGVVDGGSTGV 185

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAP 232
           GLEST+++        + RPGG+ IE LK  +  V ++  +  T   P+SPGM  +HYAP
Sbjct: 186 GLESTVLDCSV-HPPMLYRPGGVTIEELKEVVGEVAVDPSLKNTEDAPRSPGMKYTHYAP 244

Query: 233 RSQV-------RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNL 282
           +  +       R++A+    RE   + G +  +       A   +       L   A  L
Sbjct: 245 KGSLTLVHDVSRIQALLDEAREQGKKVGVLTTEERAAEYKADTVIACGAREDLSTVAAKL 304

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  ++  D      I   + PN G+G AI NRLE+AA  R
Sbjct: 305 YEALRQFDQENVDVIYSETFPNEGVGAAIMNRLEKAAGGR 344


>gi|222085082|ref|YP_002543612.1| translation factor sua5 protein [Agrobacterium radiobacter K84]
 gi|221722530|gb|ACM25686.1| translation factor sua5 protein [Agrobacterium radiobacter K84]
          Length = 324

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 165/303 (54%), Positives = 213/303 (70%), Gaps = 2/303 (0%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            GLPI +PTETVYGLA D+ NP AI R+YE K RP  NPLICH+SD++M +++A  DP+S
Sbjct: 24  EGLPIGLPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMSDLAMAERYAIFDPVS 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             LA+ FWPGPLTLVL L   +DIHPL+TA L T   R+P GF  +LI  +G PLA PSA
Sbjct: 84  RKLAEAFWPGPLTLVLPLRPESDIHPLATAGLDTVGIRIPQGFAGELIRAFGRPLAAPSA 143

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG+IS T+  H+    + + I LI+D G S +G+ESTIV V+   ++R+LRPGGL  +
Sbjct: 144 NTSGKISATSADHV-HDDLGERISLILDAGASVVGVESTIVKVE-HGEMRLLRPGGLAAD 201

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
            ++R     L+     ++  ++PGML SHYAP + VRL A  V+  EALIRFG   I  I
Sbjct: 202 EIERVAGQSLKRKNGASAAIEAPGMLASHYAPGAAVRLDATAVSSGEALIRFGKPDIAGI 261

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           E A + L+LS +G L EAA NLF++MK AD SGA++IAFSSIP+ GLG AIN+RL+RAAA
Sbjct: 262 ETAAVVLDLSPSGDLAEAAANLFDFMKRADASGAATIAFSSIPDEGLGEAINDRLQRAAA 321

Query: 321 PRN 323
           PR 
Sbjct: 322 PRE 324


>gi|228936610|ref|ZP_04099404.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823045|gb|EEM68883.1| hypothetical protein bthur0009_50450 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 346

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 113/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +    I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASIATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|116873906|ref|YP_850687.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742784|emb|CAK21908.1| Sua5/YciO/YrdC/YwlC family protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 345

 Score =  362 bits (929), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 118/339 (34%), Positives = 181/339 (53%), Gaps = 23/339 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +++ +  ++A + L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++
Sbjct: 12  LSNQSIYQEAAKLLQKGECVAFPTETVYGLGADATNQAAIQKIYTAKGRPSDNPLIVHIA 71

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
               + +      P ++ L + FWPGPLTL+L L+  + +    +A L T   R+P    
Sbjct: 72  RREQMDQFVESYPPKAIQLMEKFWPGPLTLILPLIKDS-LAANVSAGLSTVGVRMPEHPV 130

Query: 125 -KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              LI+T   P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++ 
Sbjct: 131 SLDLIKTANIPVAAPSANRSGKPSPTTAAHVI-EDLDGKIAGIIDGGPTGVGLESTVIDC 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRA 240
             E  V ILRPGG+  E ++R I   ++   +   ET  P++PGM  +HYAP++ V L  
Sbjct: 190 SQETPV-ILRPGGITKEQIERVIG-PVKVATNSTTETEQPKAPGMKYTHYAPKAPVYLIE 247

Query: 241 IHVNPREALI--------RFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMK 287
                 ++ I        + G +  K +      NA+I      T  L+E A +L+N ++
Sbjct: 248 GSAKFWQSEIDKVEAAHKKLGILATKELTSSLSTNAVIQTT-GSTRALEEVATSLYNGLR 306

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
             D +    I     P   LG AI NRLE+AA  R  S+
Sbjct: 307 AFDHADVDVIFAEVYPETELGAAIMNRLEKAAGNRRISE 345


>gi|15616333|ref|NP_244638.1| hypothetical protein BH3771 [Bacillus halodurans C-125]
 gi|10176395|dbj|BAB07490.1| BH3771 [Bacillus halodurans C-125]
          Length = 348

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 177/333 (53%), Gaps = 18/333 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +SN +++A  ++  G  +A+PTETVYGL  ++ +  A+++++  K RP+ NPLI H+S  
Sbjct: 20  NSNEIKEAALWIKKGELVALPTETVYGLGANALSDEAVQKIFIAKGRPSDNPLIVHISRK 79

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + +  S  P S + L   FWPGPLT++       ++  + TA L T   R+P     +
Sbjct: 80  EQLLRLVSHIPDSANLLINAFWPGPLTIIFP--KGEEVSTVVTAGLDTVAVRMPSHPVAQ 137

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LIE    P+A PSANRSG+ S T+  H+L + +  +I  ++DGG +  G+EST+++   
Sbjct: 138 ALIEAANVPIAAPSANRSGKPSPTSATHVL-ADLRGKIAGVVDGGPTAEGVESTVIDCTT 196

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIH- 242
              + + RPGG+  E L+  +  + ++   + +   P+SPGM  +HYAP  ++ L     
Sbjct: 197 TPPI-LYRPGGVTREQLEAVLGPIRIDPALLGKDEQPKSPGMKYTHYAPEGELTLVENQA 255

Query: 243 ------VNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
                    RE   + G +     K   +A + L++     L E A NL++ ++  D+  
Sbjct: 256 AIQTFVDKWREKQFKVGIMATDEHKQDYDADVILSVGSRNDLAEVAHNLYHVLRQFDEQK 315

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
              I   + P  G+G+AI NRLE+AA  R   +
Sbjct: 316 VDVIIGETFPREGIGVAIMNRLEKAAGGRIIQR 348


>gi|86356545|ref|YP_468437.1| translation factor sua5 protein [Rhizobium etli CFN 42]
 gi|86280647|gb|ABC89710.1| probable translation factor sua5 protein [Rhizobium etli CFN 42]
          Length = 336

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 168/319 (52%), Positives = 211/319 (66%), Gaps = 2/319 (0%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +      AL  AC  L  G  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH
Sbjct: 17  IRADRQTALEAACAALSDGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICH 76

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           ++D+ M ++HA  DP+S  LA+ FWPGPLTLVL L + + IH L+TA L +   RVP GF
Sbjct: 77  MADLEMAEQHAEFDPVSRALAEAFWPGPLTLVLPLKAESPIHALATAGLDSVGVRVPKGF 136

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              LI  +G PLA PSAN SG IS T+  H+  + +  +IPLI+D G S +G+ESTIV V
Sbjct: 137 AGTLIGAFGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSTVGVESTIVKV 195

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + + +VR+LRPGGL    ++R     L      ++  ++PGML SHYAP + VRL A  V
Sbjct: 196 EGD-RVRLLRPGGLAAREIERIAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAV 254

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EALI FG   ++   +A I L+LS  G L EAA NLF+YMK AD SG SSIAFS IP
Sbjct: 255 EPGEALIAFGGAVVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIP 314

Query: 304 NHGLGIAINNRLERAAAPR 322
           + GLG AIN+RL+RAAAPR
Sbjct: 315 DDGLGEAINDRLQRAAAPR 333


>gi|225867306|ref|YP_002752684.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102]
 gi|229187551|ref|ZP_04314691.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1]
 gi|225785999|gb|ACO26216.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus 03BB102]
 gi|228595918|gb|EEK53598.1| hypothetical protein bcere0004_50840 [Bacillus cereus BGSC 6E1]
          Length = 346

 Score =  361 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 112/326 (34%), Positives = 168/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     IA PTETVYGL  ++ N  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAIAFPTETVYGLGANAMNDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L + FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMEHFWPGPLTIILPRKEG--ISEKVTAGLHTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    + ++I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNEKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVKGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +  +    I NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QRLVDEKKEEGFKVGVLTTEEYHHIYNADVVLSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S P+ G+G AI NRL +AA  
Sbjct: 316 VIFSESFPSEGIGNAIMNRLTKAAGH 341


>gi|218900451|ref|YP_002448862.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842]
 gi|228968453|ref|ZP_04129442.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218543168|gb|ACK95562.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus G9842]
 gi|228791233|gb|EEM38846.1| hypothetical protein bthur0004_52280 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 346

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +     +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QQLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|297531575|ref|YP_003672850.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. C56-T3]
 gi|297254827|gb|ADI28273.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. C56-T3]
          Length = 355

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 118/331 (35%), Positives = 176/331 (53%), Gaps = 17/331 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +R+A E+L AG  IA PTETVYGL  D+ N  A+ +++  K RP+ NPLI HV+ ++  
Sbjct: 26  QIREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQA 85

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   AS+ P++  L + FWPGPLTLVL   +   +    TA L T   R+P       LI
Sbjct: 86  EAVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALI 144

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++      
Sbjct: 145 EASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLDCSGGVP 203

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA------- 240
             ILRPGG+  E L  AI  VE    VD+ + P++PGM  +HYAP++ + + A       
Sbjct: 204 -TILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 262

Query: 241 -IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            +    R      G +  +   +   A + L       L+  A  L++ ++  D++    
Sbjct: 263 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 322

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           I   + P  G+G AI NRL +AA  R  S++
Sbjct: 323 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 353


>gi|75762684|ref|ZP_00742523.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903800|ref|ZP_04067916.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL
           4222]
 gi|74489830|gb|EAO53207.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228855827|gb|EEN00371.1| hypothetical protein bthur0014_49550 [Bacillus thuringiensis IBL
           4222]
          Length = 346

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +     +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QQLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|154505651|ref|ZP_02042389.1| hypothetical protein RUMGNA_03190 [Ruminococcus gnavus ATCC 29149]
 gi|153794090|gb|EDN76510.1| hypothetical protein RUMGNA_03190 [Ruminococcus gnavus ATCC 29149]
          Length = 523

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 168/336 (50%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D +A+R+A E L  G  +A PTETVYGL  ++ +  A ++ YE K RP+ NPLI H++D
Sbjct: 26  IDEDAIREAGEILREGGLVAFPTETVYGLGANALDEEAAKKTYEAKGRPSDNPLIVHIAD 85

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  + +    V P +  LAK FWPGPLT++ +   ++ +   +T  L T   R+P     
Sbjct: 86  LEDLSEITENVPPETELLAKHFWPGPLTMIFE--KSSLVPYGTTGGLDTVAVRMPSDLIA 143

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +KLI   G  ++ PSAN SG+ S T  +H+    +  +I +IIDGG   IGLESTI+++ 
Sbjct: 144 RKLILAAGGYVSAPSANTSGRPSPTTAEHVW-EDLNGKIEMIIDGGSVDIGLESTILDMT 202

Query: 185 CEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
               + ILRPG +  + L+  I V    E     + +  P++PGM   HYAP++++ +  
Sbjct: 203 VSPPM-ILRPGAITADMLEEVIGVVSVDETILGSESSQAPKAPGMKYRHYAPKAKLTIVE 261

Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
             +      IR                G           +  N+      K  A NL+  
Sbjct: 262 GSLKEEVFAIRQLAYEKSRQGVQVGIIGTNETVEFYTHGLVKNIGSRENEKTIARNLYRI 321

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D+   S I   S    G+G AI NRLE+AA  
Sbjct: 322 LREFDEEDVSEIYSESFAIQGIGNAIMNRLEKAAGH 357


>gi|56421910|ref|YP_149228.1| hypothetical protein GK3375 [Geobacillus kaustophilus HTA426]
 gi|56381752|dbj|BAD77660.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 349

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 118/331 (35%), Positives = 176/331 (53%), Gaps = 17/331 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +R+A E+L AG  IA PTETVYGL  D+ N  A+ +++  K RP+ NPLI HV+ ++  
Sbjct: 20  QIREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQA 79

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   AS+ P++  L + FWPGPLTLVL   +   +    TA L T   R+P       LI
Sbjct: 80  EAVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALI 138

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++      
Sbjct: 139 EASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLDCSGGVP 197

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA------- 240
             ILRPGG+  E L  AI  VE    VD+ + P++PGM  +HYAP++ + + A       
Sbjct: 198 -TILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 256

Query: 241 -IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            +    R      G +  +   +   A + L       L+  A  L++ ++  D++    
Sbjct: 257 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 316

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           I   + P  G+G AI NRL +AA  R  S++
Sbjct: 317 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 347


>gi|291486279|dbj|BAI87354.1| hypothetical protein BSNT_05644 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 346

 Score =  360 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 172/331 (51%), Gaps = 18/331 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  +++N  A++++YE K RP+ NPLI H++D
Sbjct: 16  TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS ++         +  L K FWPG LTL+L       + P  TA L T   R+P     
Sbjct: 76  ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPGA-LSPRVTAGLDTVAIRMPDHPLA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST+++  
Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193

Query: 185 CEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQV------ 236
            +  V +LRPGG+  E ++  I      +   D+   P SPGM  +HYAP + +      
Sbjct: 194 DDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGS 252

Query: 237 --RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
             R++ +    ++   R G +  +    + +A    +  +  +L+  A  L++ ++  D+
Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTEENAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDE 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +    I   S P+ G+G+AI NRL +AA  R
Sbjct: 313 NKVDLIISESFPDTGVGLAIMNRLMKAAGGR 343


>gi|218233574|ref|YP_002370102.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264]
 gi|218161531|gb|ACK61523.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus B4264]
          Length = 346

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 166/326 (50%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVTEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G +  +    + +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQYVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|228942472|ref|ZP_04105009.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975404|ref|ZP_04135960.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982041|ref|ZP_04142334.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407]
 gi|228777705|gb|EEM25979.1| hypothetical protein bthur0002_51990 [Bacillus thuringiensis Bt407]
 gi|228784386|gb|EEM32409.1| hypothetical protein bthur0003_51490 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817214|gb|EEM63302.1| hypothetical protein bthur0008_51020 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326943123|gb|AEA19019.1| SUA5 protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 346

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 110/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +     +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|229153489|ref|ZP_04281667.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550]
 gi|228630093|gb|EEK86744.1| hypothetical protein bcere0011_50190 [Bacillus cereus m1550]
          Length = 346

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 166/326 (50%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G +  +    + +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQYVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|217963355|ref|YP_002349033.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23]
 gi|290892704|ref|ZP_06555696.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           J2-071]
 gi|217332625|gb|ACK38419.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HCC23]
 gi|290557764|gb|EFD91286.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           J2-071]
 gi|307572068|emb|CAR85247.1| translation factor, SUA5 type [Listeria monocytogenes L99]
          Length = 345

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 167/336 (49%), Gaps = 19/336 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++    ++A E L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++ 
Sbjct: 13  SNQAIYQEAAELLQNGECVAFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIAR 72

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
           +  +    AS  P ++ L + FWPGPLT++L L   + +    +A L T   R+P     
Sbjct: 73  LDQMNSFVASYPPKAIQLMEKFWPGPLTVILPLKKDS-LAANVSAGLSTVGVRMPEHPVS 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI     P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++  
Sbjct: 132 LALINAANVPVAAPSANRSGKPSPTTADHVI-EDLDGKIAGIIDGGATGVGLESTVIDCS 190

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRL---- 238
            E  + ILRPGG+  E +++ I           ET  P++PGM  +HYAP++ V L    
Sbjct: 191 LEMPI-ILRPGGITKEQIEQVIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249

Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                     +    ++  I      I  +  +           L E A +L+  ++  D
Sbjct: 250 TPFWQKEINKVEAANKKLGILATKELIDQLTTSAAVETTGSIKALDEIATSLYKGLRAFD 309

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            +    I     P   LG AI NRLE+AA  R  ++
Sbjct: 310 HADVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE 345


>gi|30023356|ref|NP_834987.1| SUA5 protein [Bacillus cereus ATCC 14579]
 gi|229112739|ref|ZP_04242272.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15]
 gi|229130575|ref|ZP_04259531.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4]
 gi|229147866|ref|ZP_04276207.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24]
 gi|296505750|ref|YP_003667450.1| integral membrane protein [Bacillus thuringiensis BMB171]
 gi|29898917|gb|AAP12188.1| SUA5 protein [Bacillus cereus ATCC 14579]
 gi|228635516|gb|EEK92005.1| hypothetical protein bcere0012_49890 [Bacillus cereus BDRD-ST24]
 gi|228652914|gb|EEL08796.1| hypothetical protein bcere0015_50080 [Bacillus cereus BDRD-Cer4]
 gi|228670720|gb|EEL26031.1| hypothetical protein bcere0018_49780 [Bacillus cereus Rock1-15]
 gi|296326802|gb|ADH09730.1| integral membrane protein [Bacillus thuringiensis BMB171]
          Length = 346

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|319768450|ref|YP_004133951.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC52]
 gi|317113316|gb|ADU95808.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC52]
          Length = 355

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/331 (35%), Positives = 176/331 (53%), Gaps = 17/331 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +R+A E+L AG  IA PTETVYGL  D+ N  A+ +++  K RP+ NPLI HV+ ++  
Sbjct: 26  QIREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQA 85

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   AS+ P++  L + FWPGPLTLVL   +   +    TA L T   R+P       LI
Sbjct: 86  EAVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALI 144

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++      
Sbjct: 145 EASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLDCSGSVP 203

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA------- 240
             ILRPGG+  E L  AI  VE    VD+ + P++PGM  +HYAP++ + + A       
Sbjct: 204 -TILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 262

Query: 241 -IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            +    R      G +  +   +   A + L       L+  A  L++ ++  D++    
Sbjct: 263 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 322

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           I   + P  G+G AI NRL +AA  R  S++
Sbjct: 323 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 353


>gi|190890611|ref|YP_001977153.1| translation factor protein [Rhizobium etli CIAT 652]
 gi|190695890|gb|ACE89975.1| probable translation factor protein [Rhizobium etli CIAT 652]
          Length = 334

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 168/320 (52%), Positives = 211/320 (65%), Gaps = 2/320 (0%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +      AL  A   L  G  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH
Sbjct: 17  IEADRQAALEAASTALADGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICH 76

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           ++D++M + HA+ DPLS  LA+ FWPGPLTLVL L   + IH L+TA L +   RVP GF
Sbjct: 77  MADLAMAEHHAAFDPLSRALAEAFWPGPLTLVLPLKPESPIHSLATAGLDSVGVRVPKGF 136

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              LI  +G PLA PSAN SG IS T+  H+  + +  +IPLI+D G S +G+ESTIV V
Sbjct: 137 AGALIGAFGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSAVGVESTIVKV 195

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + + +VR+LRPGGL    ++R     L      ++  ++PGML SHYAP + VRL A  V
Sbjct: 196 EGD-RVRLLRPGGLAAREVERVAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAV 254

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EALI FG   ++   +A I L+LS  G L EAA NLF+YMK AD SG SSIAFS IP
Sbjct: 255 EPGEALIAFGGAAVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIP 314

Query: 304 NHGLGIAINNRLERAAAPRN 323
           + GLG AIN+RL+RAAAPR+
Sbjct: 315 DDGLGEAINDRLQRAAAPRD 334


>gi|229050996|ref|ZP_04194545.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676]
 gi|228722373|gb|EEL73769.1| hypothetical protein bcere0027_49490 [Bacillus cereus AH676]
          Length = 346

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSTVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|261420780|ref|YP_003254462.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC61]
 gi|261377237|gb|ACX79980.1| Sua5/YciO/YrdC/YwlC family protein [Geobacillus sp. Y412MC61]
          Length = 349

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 118/331 (35%), Positives = 176/331 (53%), Gaps = 17/331 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +R+A E+L AG  IA PTETVYGL  D+ N  A+ +++  K RP+ NPLI HV+ ++  
Sbjct: 20  QIREAVEWLRAGEVIAFPTETVYGLGADAANTAAVEKIFAAKGRPSDNPLIVHVASMAQA 79

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   AS+ P++  L + FWPGPLTLVL   +   +    TA L T   R+P       LI
Sbjct: 80  EAVAASIPPMAKTLMERFWPGPLTLVLPKRAKA-VSERVTAGLPTVAVRMPDHPLALALI 138

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  LA PSANRSG+ S T   H+L + +   I  +IDGG + +G+EST+++      
Sbjct: 139 EASGLALAAPSANRSGRPSPTTAAHVL-ADLDGRIAGVIDGGPTGVGVESTVLDCSGSVP 197

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA------- 240
             ILRPGG+  E L  AI  VE    VD+ + P++PGM  +HYAP++ + + A       
Sbjct: 198 -TILRPGGVTKEALIEAIGRVEEAAAVDDEAAPKAPGMKYTHYAPKAPLWIVAGPPAFLQ 256

Query: 241 -IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            +    R      G +  +   +   A + L       L+  A  L++ ++  D++    
Sbjct: 257 RLVDESRAEGKTVGVLTTEENRDQYAADVVLPCGTRQALETVASRLYDTLRRFDETNVDL 316

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           I   + P  G+G AI NRL +AA  R  S++
Sbjct: 317 IYSEAFPEEGIGAAIMNRLRKAAGGRAISEQ 347


>gi|52787618|ref|YP_093447.1| YwlC [Bacillus licheniformis ATCC 14580]
 gi|52350120|gb|AAU42754.1| YwlC [Bacillus licheniformis ATCC 14580]
          Length = 349

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 114/331 (34%), Positives = 171/331 (51%), Gaps = 18/331 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  ++++  A+ ++YE K RP+ NPLI H+++
Sbjct: 18  TNCPQIAQAARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAE 77

Query: 67  ISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           I  + + A VD P +  L K FWPGPLTLVL       +    TA L T   R+P     
Sbjct: 78  IEQLAEFAEVDSPQAEMLMKRFWPGPLTLVLPCKPGV-LSTRVTAGLDTVAVRMPDHPVA 136

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  +H+++  +   I  ++DGG + +G+EST+V+  
Sbjct: 137 LELIRQAGVPVAAPSANLSGKPSPTKAEHVVND-LNGRIAGVVDGGPTGVGVESTVVSCT 195

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            E  V ILRPGG+  E L+ A    L  +   DE   P SPGM  +HYAP + + +    
Sbjct: 196 GEIPV-ILRPGGVTKEQLEEAAGPVLIDQGLTDEKKAPMSPGMKYTHYAPEAPLAIVNGG 254

Query: 243 VNPREALI--------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           V   + LI        + G +  +    +  A       +  +L+  A  L++ ++  D+
Sbjct: 255 VEDIQRLIDQYQKDGMKVGVLTTEERADVYQADAVRICGRRDRLETVAAGLYDVLRSFDE 314

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                I   S P  G+G AI NRL +AA  R
Sbjct: 315 ERLDFIFAESFPEEGVGRAIMNRLLKAAGHR 345


>gi|228961589|ref|ZP_04123198.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798071|gb|EEM45075.1| hypothetical protein bthur0005_50310 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 346

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISENVTAGLNTVGVRMPDHPIAIALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    ++   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKKEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASKVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|206970259|ref|ZP_03231212.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134]
 gi|228924061|ref|ZP_04087337.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229072792|ref|ZP_04205991.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185]
 gi|229082540|ref|ZP_04215003.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2]
 gi|229181573|ref|ZP_04308899.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W]
 gi|229193577|ref|ZP_04320521.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876]
 gi|206734836|gb|EDZ52005.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus AH1134]
 gi|228589882|gb|EEK47757.1| hypothetical protein bcere0002_52210 [Bacillus cereus ATCC 10876]
 gi|228601941|gb|EEK59436.1| hypothetical protein bcere0005_49130 [Bacillus cereus 172560W]
 gi|228700972|gb|EEL53495.1| hypothetical protein bcere0023_51570 [Bacillus cereus Rock4-2]
 gi|228710283|gb|EEL62258.1| hypothetical protein bcere0025_49520 [Bacillus cereus F65185]
 gi|228835551|gb|EEM80916.1| hypothetical protein bthur0011_50340 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 346

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISEKVTAGLNTVGVRMPDHPIALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSAVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 256 QHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 316 VIFSESFPNEGIGNAIMNRLTKAAGH 341


>gi|52082226|ref|YP_081017.1| hypothetical protein BL03986 [Bacillus licheniformis ATCC 14580]
 gi|319648100|ref|ZP_08002317.1| YwlC protein [Bacillus sp. BT1B_CT2]
 gi|52005437|gb|AAU25379.1| conserved protein YwlC [Bacillus licheniformis ATCC 14580]
 gi|317389735|gb|EFV70545.1| YwlC protein [Bacillus sp. BT1B_CT2]
          Length = 347

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 114/331 (34%), Positives = 171/331 (51%), Gaps = 18/331 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  ++++  A+ ++YE K RP+ NPLI H+++
Sbjct: 16  TNCPQIAQAARLLQQNETVAFPTETVYGLGANAKHSEAVAKIYEAKGRPSDNPLIVHIAE 75

Query: 67  ISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           I  + + A VD P +  L K FWPGPLTLVL       +    TA L T   R+P     
Sbjct: 76  IEQLAEFAEVDSPQAEMLMKRFWPGPLTLVLPCKPGV-LSTRVTAGLDTVAVRMPDHPVA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  +H+++  +   I  ++DGG + +G+EST+V+  
Sbjct: 135 LELIRQAGVPVAAPSANLSGKPSPTKAEHVVND-LNGRIAGVVDGGPTGVGVESTVVSCT 193

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            E  V ILRPGG+  E L+ A    L  +   DE   P SPGM  +HYAP + + +    
Sbjct: 194 GEIPV-ILRPGGVTKEQLEEAAGPVLIDQGLTDEKKAPMSPGMKYTHYAPEAPLAIVNGG 252

Query: 243 VNPREALI--------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           V   + LI        + G +  +    +  A       +  +L+  A  L++ ++  D+
Sbjct: 253 VEDIQRLIDQYQKDGMKVGVLTTEERADVYQADAVRICGRRDRLETVAAGLYDVLRSFDE 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                I   S P  G+G AI NRL +AA  R
Sbjct: 313 ERLDFIFAESFPEEGVGRAIMNRLLKAAGHR 343


>gi|315304791|ref|ZP_07874955.1| protein Sua5 [Listeria ivanovii FSL F6-596]
 gi|313626839|gb|EFR95808.1| protein Sua5 [Listeria ivanovii FSL F6-596]
          Length = 345

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 115/336 (34%), Positives = 169/336 (50%), Gaps = 19/336 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ +   KA + L  G  +A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H++ 
Sbjct: 13  SNKSVYEKAAKLLQNGECVAFPTETVYGLGADATNQAAIKKIYMAKGRPSDNPLIVHIAS 72

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
              +    AS    ++ L + FWPGPLT++L L   T +    +A L T   R+P     
Sbjct: 73  REQMDIFVASYPQKAMQLMENFWPGPLTVILPLKKDT-LASNVSAGLSTVGVRMPEHPVS 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI+  G P+A PSANRSG+ S T   H++   +  EI  IIDGG + +G+EST+++  
Sbjct: 132 LALIKEAGLPVAAPSANRSGKPSPTTASHVI-EDLDGEIAGIIDGGETGVGVESTVIDCS 190

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238
            E  V ILRPGG+  E +++ I  VEL      ET  P++PGM  +HYAP++ V L    
Sbjct: 191 AEIPV-ILRPGGITKEQIEQIIGPVELATNDTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249

Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                          ++  I      I+ +    I  +      + E A  L+  ++  D
Sbjct: 250 KEFWQKEINKAEAAHKKIGILATEELIEGLTTNAIIQSTGSISSMAEIANQLYKGLRAFD 309

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
                 I     P   LG A+ NRLE+AA  R  S+
Sbjct: 310 HVEVDMIFAEVYPETELGAAVMNRLEKAAGNRRISE 345


>gi|256368861|ref|YP_003106367.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915]
 gi|255999019|gb|ACU47418.1| Sua5/YciO/YrdC family protein [Brucella microti CCM 4915]
          Length = 323

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIVHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|228955573|ref|ZP_04117575.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804101|gb|EEM50718.1| hypothetical protein bthur0006_49270 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 342

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 167/326 (51%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 16  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 75

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 76  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKE--GISEKVTAGLNTVGVRMPDHPIALALI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 134 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSAVP 192

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 193 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 251

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +     +++ +A + L+      L   A  L++ ++  D S   
Sbjct: 252 QHLVDEKKEEGFKVGVLTTEEYQHVYSADVILSCGVRSDLASVATKLYDVLRTFDASEVD 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S PN G+G AI NRL +AA  
Sbjct: 312 VIFSESFPNEGIGNAIMNRLTKAAGH 337


>gi|16080748|ref|NP_391576.1| ribosome maturation factor; RNA binding protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221311656|ref|ZP_03593503.1| hypothetical protein Bsubs1_19976 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315984|ref|ZP_03597789.1| hypothetical protein BsubsN3_19897 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320895|ref|ZP_03602189.1| hypothetical protein BsubsJ_19840 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325179|ref|ZP_03606473.1| hypothetical protein BsubsS_20001 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|732384|sp|P39153|YWLC_BACSU RecName: Full=Probable tRNA threonylcarbamoyladenosine biosynthesis
           protein YwlC; AltName: Full=t(6)A37
           threonylcarbamoyladenosine biosynthesis protein YwlC
 gi|556881|emb|CAA86105.1| Similar to Saccharomyces cerevisiae SUA5 protein [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2636220|emb|CAB15712.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|1095419|prf||2108403D ipc-29d gene
          Length = 346

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 173/331 (52%), Gaps = 18/331 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  +++N  A++++YE K RP+ NPLI H++D
Sbjct: 16  TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS ++         +  L K FWPG LTL+L       + P  TA L+T   R+P     
Sbjct: 76  ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDA-LSPRVTAGLETVAIRMPDHPLA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST+++  
Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIVDGGPTGIGVESTVLSCA 193

Query: 185 CEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQV------ 236
            +  V +LRPGG+  E ++  I      +   D+   P SPGM  +HYAP + +      
Sbjct: 194 DDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGS 252

Query: 237 --RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
             R++ +    ++   R G +  +    + +A    +  +  +L+  A  L++ ++  D+
Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTEEKAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDE 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +    I   S P+ G+G+AI NRL +AA  R
Sbjct: 313 NKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343


>gi|17987811|ref|NP_540445.1| SUA5 protein [Brucella melitensis bv. 1 str. 16M]
 gi|225851941|ref|YP_002732174.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457]
 gi|256044125|ref|ZP_05447032.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256264548|ref|ZP_05467080.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260563482|ref|ZP_05833968.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str.
           16M]
 gi|265990535|ref|ZP_06103092.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17983537|gb|AAL52709.1| sua5 protein [Brucella melitensis bv. 1 str. 16M]
 gi|225640306|gb|ACO00220.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis ATCC 23457]
 gi|260153498|gb|EEW88590.1| Sua5/YciO/YrdC/YwlC protein family [Brucella melitensis bv. 1 str.
           16M]
 gi|263001319|gb|EEZ13894.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094882|gb|EEZ18620.1| Sua5/YciO/YrdC/YwlC protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326408439|gb|ADZ65504.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M28]
 gi|326538155|gb|ADZ86370.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis M5-90]
          Length = 323

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 195/319 (61%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +  +I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGQIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    + ++  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHSAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|228911164|ref|ZP_04074970.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL
           200]
 gi|228848527|gb|EEM93375.1| hypothetical protein bthur0013_53040 [Bacillus thuringiensis IBL
           200]
          Length = 346

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 166/326 (50%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++A + L     +A PTETVYGL  ++ +  AI +++E K RP+ NPLI H+   S +
Sbjct: 20  QLQEAAKLLRENEAVAFPTETVYGLGANAMDDEAIAKIFEAKGRPSDNPLIVHIGTKSQL 79

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 + P++  L   FWPGPLT++L       I    TA L T   R+P       LI
Sbjct: 80  DGIVKEIPPVAEKLMAHFWPGPLTIILPRKEG--ISERVTAGLNTVGVRMPDHPVALALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSANRSG+ S T   H+    +  +I  I+DGG + +G+EST+++      
Sbjct: 138 EEANVPVAAPSANRSGRPSPTLASHVY-EDLNGKIAGIVDGGATGVGVESTVIDCTSPVP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQV--------RL 238
             ILRPGG+  E L+  I  V L+  + DE   P+SPGM  +HYAP++ +         +
Sbjct: 197 -TILRPGGITKEQLEAVIGTVSLDPALKDEKEKPKSPGMKYTHYAPKAPLSIVEGSREFI 255

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + +    +E   + G +     +++ NA + L+      L   A  L++ ++  D S   
Sbjct: 256 QQLVDGKKEEGFKVGVLTTEEYQHVYNADVILSCGVRSDLASVATKLYDVLRTFDASEVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S  N G+G AI NRL +AA  
Sbjct: 316 VIFSESFSNEGIGNAIMNRLTKAAGH 341


>gi|226315059|ref|YP_002774955.1| hypothetical protein BBR47_54740 [Brevibacillus brevis NBRC 100599]
 gi|226098009|dbj|BAH46451.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 359

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 107/339 (31%), Positives = 168/339 (49%), Gaps = 28/339 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +  A  FL  G  +A PTETVYGL  ++ +  A+ +++  K RP+ NPLI H+     +
Sbjct: 24  QIVDAARFLREGAVVAFPTETVYGLGANALSNEAVEKIFTAKGRPSDNPLIVHIGAWDQL 83

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
              A  V      L + FWPGPLT++L    T  +  L TA L +   R+P       LI
Sbjct: 84  STVASEVPEKGKKLMEAFWPGPLTVILP--KTDQVASLVTAGLDSVGVRMPDHPIALALI 141

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+A PSANRSG+ S T   H+L + +   +  ++DGG + +G+EST+++V  +  
Sbjct: 142 KEAGVPIAAPSANRSGRPSPTTAAHVL-ADLDGRVAGVVDGGATGVGVESTVIDVTQDPP 200

Query: 189 VRILRPGGLEIETLKRAIS-VELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           + ILRPGG+  E ++  I  VEL+    V     P+SPGM  +HYAP  ++ L +     
Sbjct: 201 M-ILRPGGITREQMEPVIGYVELDPSFQVGAAEAPRSPGMKYTHYAPEGEMWLVSGECEK 259

Query: 246 ------------REALIRFGNVPIKNI-------ENAIISLNLSKTGKLKEAAFNLFNYM 286
                       ++   + G +  +          +  + L +     L+  A  L+  +
Sbjct: 260 VRGKMEDMLQQAKQHGQKTGVLATEETAPFWQSHASVDVVLVVGSQSDLEGVAQQLYAVL 319

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           +  DD     I   + P +GLG+A+ NRLE+AA  R  S
Sbjct: 320 REFDDQEVQYIVGETFPRNGLGMAVMNRLEKAAGGRVLS 358


>gi|256159112|ref|ZP_05456933.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M490/95/1]
 gi|256254451|ref|ZP_05459987.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti B1/94]
 gi|261221622|ref|ZP_05935903.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti B1/94]
 gi|265997584|ref|ZP_06110141.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M490/95/1]
 gi|260920206|gb|EEX86859.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti B1/94]
 gi|262552052|gb|EEZ08042.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M490/95/1]
          Length = 323

 Score =  357 bits (918), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 194/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A + LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAVVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|242399386|ref|YP_002994810.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739]
 gi|242265779|gb|ACS90461.1| Sua5 superfamily-related protein [Thermococcus sibiricus MM 739]
          Length = 341

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 115/332 (34%), Positives = 176/332 (53%), Gaps = 23/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++ A  F+     +A PTETVYGL  D+ N  A+R++++ K RP  NPLI H+++ 
Sbjct: 12  DWKKIKVAARFIKESKLVAFPTETVYGLGADALNEDAVRKIFQAKGRPPDNPLIIHIANF 71

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + + A   P +   LA+ FWPGPLTLVL      ++  ++T  L+T   R+P      
Sbjct: 72  EQIYELAREVPETAKILAQRFWPGPLTLVLP--KKDEVPYVTTGGLETVAIRMPDHEIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI++   P+A PSAN SG+ S T  +H++     K I  IIDGG +KIG+EST+V++  
Sbjct: 130 ALIQSSDRPIAAPSANISGKPSPTLAEHVVDDFYGK-IECIIDGGETKIGVESTVVDLTT 188

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQV------ 236
                +LRPGGL +E +K+ I  V +   V        ++PGM   HYAP +QV      
Sbjct: 189 -HPPMLLRPGGLPLEEIKKVIGKVNVHPAVKGKPIKLAKAPGMKYKHYAPEAQVIVIEGE 247

Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                 +++ +    ++  IR G +   +   A    N+ +    +E A NLF  ++  D
Sbjct: 248 REQVTKKIKELIKEYKKQKIRVGVMATGDFYEADAYFNIGE--NEEEIARNLFKALRELD 305

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            SG + I    I   GLG+A+ NRL++AA  R
Sbjct: 306 KSGVNVILAEGIEERGLGLAVMNRLKKAAGYR 337


>gi|321313245|ref|YP_004205532.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis BSn5]
 gi|320019519|gb|ADV94505.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis BSn5]
          Length = 346

 Score =  357 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 108/331 (32%), Positives = 171/331 (51%), Gaps = 18/331 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  +++N  A++++YE K RP+ NPLI H++D
Sbjct: 16  TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYEAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS ++         +  L K FWPG LTL+L       + P  TA L+T   R+P     
Sbjct: 76  ISQLEDLTGPAPEKAKTLMKRFWPGALTLILPCKPDA-LSPRVTAGLETVAIRMPDHPLA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST+++  
Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193

Query: 185 CEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            +  V +LRPGG+  E ++  I      +   D+   P SPGM  +HYAP + + +    
Sbjct: 194 DDIPV-LLRPGGITKEQIEAVIGPIHVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGS 252

Query: 243 VNPREALI--------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
               + LI        R G +  +    + +A    +  +  +L+  A  L++ ++  D+
Sbjct: 253 PEHIQHLIQEYQQGGRRVGVLTTEENAGVYSADYVKSCGRRAQLETVAAGLYDALRSFDE 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +    I   S P+ G+G+AI NRL +AA  R
Sbjct: 313 NKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343


>gi|311070214|ref|YP_003975137.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           atrophaeus 1942]
 gi|310870731|gb|ADP34206.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           atrophaeus 1942]
          Length = 346

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 110/331 (33%), Positives = 174/331 (52%), Gaps = 18/331 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    + +A + L     +A PTETVYGL  ++ +  A+ ++YE K RP+ NPLI H++D
Sbjct: 16  TKDPQIAQAADLLRQNEVVAFPTETVYGLGANAESTEAVMKIYEAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS + + A      +  L K FWPG LTLVL       + P  TA L+T   R+P     
Sbjct: 76  ISQLDRIAGPASEKAKKLMKQFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDHPLA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI + G P+A PSAN SG+ S T  +H+    +   I  IIDGG + +G+EST+++  
Sbjct: 135 LALIRSSGLPIAAPSANLSGKPSPTRAEHV-EHDLNGRIAGIIDGGATGLGVESTVISCS 193

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV------ 236
            +  V +LRPGG+  E ++  I   L  +   ++  TP SPGM  +HYAP + +      
Sbjct: 194 EDMPV-LLRPGGITKEQIEEEIGEVLVDKGLTEKNETPISPGMKYTHYAPSAPLAVTEGS 252

Query: 237 --RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
             R++A+    +++  R G +  +    I  A    +  +  +L+  A +L++ ++  D+
Sbjct: 253 AERIQALVREYQQSGKRVGVLTTEERADIYEADFVKSCGRRDQLETVAASLYDALRSFDE 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                I   + PN G+G AI NRL +AA  +
Sbjct: 313 VKVDFIIAEAFPNTGVGHAIMNRLMKAAGGK 343


>gi|194016307|ref|ZP_03054921.1| YwlC [Bacillus pumilus ATCC 7061]
 gi|194011780|gb|EDW21348.1| YwlC [Bacillus pumilus ATCC 7061]
          Length = 350

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 108/330 (32%), Positives = 165/330 (50%), Gaps = 18/330 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   L     +A PTETVYGL  +++   A+ ++YE K RP+ NPLI H+++I  +
Sbjct: 21  QIEQAALLLQQNEVVAFPTETVYGLGANAKETEAVMKIYEAKGRPSDNPLIVHIAEIEQL 80

Query: 71  KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            + A +    +  L   FWPG LT+VL     T +    TA L T   R+P      +LI
Sbjct: 81  HEFAQIESEKAKALMDAFWPGALTIVLPCKPGT-LSKQVTAGLSTVGVRMPDHPIALELI 139

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            T G P+A PSANRSG+ S T   H+ +S +   I  I+DGG + IG+EST+V+   E  
Sbjct: 140 RTAGLPIAAPSANRSGKPSPTQADHV-ASDLDGRIAGIVDGGSTGIGVESTVVSCVDEIP 198

Query: 189 VRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           V ILRPGG+  E L+  +           +   P SPGM  +HYAP +++ L        
Sbjct: 199 V-ILRPGGITKEALEEVVGTVSIDPGLTKKDEAPVSPGMKYTHYAPEAKMYLFFGSDEEM 257

Query: 247 EALI--------RFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           +  I        + G +  +  ++   A +  +     K +  A NL+  ++  D++   
Sbjct: 258 QRHIQTYQAEGFKVGVLTTEEKKSLFAADVVFSCGWREKPETIAANLYRVLRQFDETDVD 317

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            I   +    G+G AI NRL++AA  R  S
Sbjct: 318 VIISEAFSEQGVGSAIMNRLQKAAGGRTLS 347


>gi|256751355|ref|ZP_05492234.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749737|gb|EEU62762.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 354

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 100/338 (29%), Positives = 164/338 (48%), Gaps = 26/338 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A + +  G  +A PTETVYG+  +S N  A+++++  K RP  NPLI H++++  
Sbjct: 15  ELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRPQDNPLIVHIAELEQ 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +      V   +  L K FWPGPLTL+     +  +  ++TA + T   R+P       L
Sbjct: 75  IYDLVKEVPQKAKTLMKKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSNTIAHLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    P++ PSAN SG+ S T+  H++   +  ++ +IIDGG   +G+EST++++  EK
Sbjct: 133 IKRAEVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGVESTVLDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
              ILRPG + +E L+  I  VE++  +     E   P+SPGM   HY+P ++V +    
Sbjct: 191 VPVILRPGAVTLEMLREVIGNVEVDPSLLKKPQEDLKPKSPGMKYKHYSPNAEVYIVTGD 250

Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           +      I+                  V           + +    + +  A NLF  ++
Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEIIVVGDRNRPETIAKNLFEVLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             D  G   I   S     +G+AI NRLE+AA  +  S
Sbjct: 311 QFDKKGVDVIFAESFEYDNIGLAIMNRLEKAAGYKEIS 348


>gi|323694150|ref|ZP_08108329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum
           WAL-14673]
 gi|323501867|gb|EGB17750.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium symbiosum
           WAL-14673]
          Length = 354

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 115/353 (32%), Positives = 172/353 (48%), Gaps = 34/353 (9%)

Query: 2   QIMSITDS--------NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53
           +++ ++D           L +A E L  G  +A PTETVYGL  ++ +  A R++YE K 
Sbjct: 4   KVLKVSDEGNFTAKEKQYLEEAAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKG 63

Query: 54  RPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
           RP+ NPLI HV+D   ++   S +    + LAK FWPGP+TL+     +  +   +T  L
Sbjct: 64  RPSDNPLIAHVADFEGLRPLVSRIPENGIKLAKAFWPGPMTLIFP--KSDLVPLGTTGGL 121

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     ++LI   G P+A PSAN SG+ S T  +H+    +   I +I+DGG 
Sbjct: 122 DTVAVRMPSDPVARELIRLAGVPVAAPSANTSGRPSPTRAEHVF-QDMNGRIEMILDGGP 180

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGML 226
             IG+ESTIV+V  E  V +LRPG + +E L  A+  V ++      V     P++PGM 
Sbjct: 181 VGIGVESTIVDVTEEIPV-MLRPGAVTMEMLHEAVGEVRIDPAILGPVSPGLKPKAPGMK 239

Query: 227 KSHYAPRSQV---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK 271
             HYAP + +               RL A  +     +        +      +  ++ +
Sbjct: 240 YRHYAPNADLTLVEGEEEKVVCEINRLAAEKLKEGYKVGIICTDETRECYGGGLVRSIGE 299

Query: 272 TGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
             K +  A NL+  ++  DD GA  I     P   LG AI NRL +AA  R Q
Sbjct: 300 RAKEETVAHNLYALLREFDDLGAQYIYSEGFPEDHLGQAIMNRLSKAAGYRIQ 352


>gi|254718586|ref|ZP_05180397.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. 83/13]
 gi|265983561|ref|ZP_06096296.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. 83/13]
 gi|306839897|ref|ZP_07472695.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. NF 2653]
 gi|264662153|gb|EEZ32414.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. 83/13]
 gi|306405083|gb|EFM61364.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. NF 2653]
          Length = 323

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAASVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|323485388|ref|ZP_08090736.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum
           WAL-14163]
 gi|323401251|gb|EGA93601.1| hypothetical protein HMPREF9474_02487 [Clostridium symbiosum
           WAL-14163]
          Length = 354

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 170/353 (48%), Gaps = 34/353 (9%)

Query: 2   QIMSITDS--------NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53
           +++ ++D           L +A E L  G  +A PTETVYGL  ++ +  A R++YE K 
Sbjct: 4   KVLKVSDEGNFTAKEKKYLEEAAEILKNGGLVAFPTETVYGLGANALDEKAARKIYEAKG 63

Query: 54  RPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
           RP+ NPLI HV+D   ++   S +    + LAK FWPGP+TL+     +  +   +T  L
Sbjct: 64  RPSDNPLIAHVADFEGLRPLVSRIPENGIKLAKAFWPGPMTLIFP--KSDLVPLGTTGGL 121

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     ++LI   G P+A PSAN SG+ S T  +H+    +   I +I+DGG 
Sbjct: 122 DTVAVRMPSDPVARELIRLAGVPVAAPSANTSGRPSPTRAEHVF-QDMNGRIEMILDGGP 180

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC----VDETSTPQSPGML 226
             IG+ESTIV+V  E  V +LRPG + +E L  A+  V ++      V     P++PGM 
Sbjct: 181 VGIGVESTIVDVTEEIPV-MLRPGAVTMEMLHEAVGEVRIDPAILGPVSPGLKPKAPGMK 239

Query: 227 KSHYAPRSQVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSK 271
             HYAP + + L           I+                     +      +  ++ +
Sbjct: 240 YRHYAPNADLTLVEGEEEKVVCEIKRLAAEKLKEGYKVGIICTDETRECYGGGLVRSIGE 299

Query: 272 TGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
             K +  A NL+  ++  DD GA  I     P   LG AI NRL +AA  R Q
Sbjct: 300 RAKEETVAHNLYALLREFDDLGAQYIYSEGFPEDHLGQAIMNRLSKAAGYRIQ 352


>gi|296331334|ref|ZP_06873806.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305676320|ref|YP_003867992.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151449|gb|EFG92326.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305414564|gb|ADM39683.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 346

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 173/331 (52%), Gaps = 18/331 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+   + +A   L     +A PTETVYGL  +++N  A++++Y+ K RP+ NPLI H++D
Sbjct: 16  TNDPQIAQAAALLRENEVVAFPTETVYGLGANAKNTDAVKKIYKAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS +          +  L K FWPG LTL+L       + P  TA L+T   R+P     
Sbjct: 76  ISQLDGLTGPAPEKAKTLMKRFWPGALTLILPCKPGA-LSPRVTAGLETVAIRMPDHPLA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST+++  
Sbjct: 135 LALIRESGLPIAAPSANLSGKPSPTKAEHV-AHDLDGRIAGIMDGGPTGIGVESTVLSCA 193

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV------ 236
            +  V +LRPGG+  E ++  I   L  +   D+   P SPGM  +HYAP + +      
Sbjct: 194 GDIPV-LLRPGGITKEQIEAEIGPILVDKGLSDQNEKPISPGMKYTHYAPTAPLAICEGG 252

Query: 237 --RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
             R++ +    ++   R G +  +    + +A    +  +  +L+  A  L++ ++  D+
Sbjct: 253 PERIQHLIQEYQQGGRRVGVLTTEENAGVYSADYVKSCGRRAQLETVAAALYDALRSFDE 312

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +    I   S P+ G+G+AI NRL +AA  R
Sbjct: 313 NKVDFIIAESFPDTGVGLAIMNRLMKAAGGR 343


>gi|306845031|ref|ZP_07477612.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO1]
 gi|306274663|gb|EFM56452.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO1]
          Length = 323

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 194/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTDRPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCDVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL   +V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSNV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|182678988|ref|YP_001833134.1| Sua5/YciO/YrdC/YwlC family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634871|gb|ACB95645.1| Sua5/YciO/YrdC/YwlC family protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 326

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 130/320 (40%), Positives = 190/320 (59%), Gaps = 9/320 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ + KA   L  G  +A PTETVYGL  D+    A+ ++Y  K+RP+ NPLI HV+ ++
Sbjct: 12  TSEITKAASILRQGGLVAFPTETVYGLGADATRDEAVAKIYAAKERPSFNPLIAHVASLA 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             + H     ++L LA  FWPGPLTLV+ +   + I  L+ A L +   RVP     + L
Sbjct: 72  EAQCHGIFSDMALRLAACFWPGPLTLVVPVSPESKICALARAGLDSVALRVPAHPIARAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           IE  G PLA PSANRSG++S  + +H+    +   + LI+DGG   +G+ESTI++    +
Sbjct: 132 IEATGLPLAAPSANRSGRVSPVSAEHV-REDLGDRVDLILDGGRCPVGVESTIIDCLEAQ 190

Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             R+LRPGG+  E ++  +   +E    +  TS  + PG+L SHYAPR++VRL A  +  
Sbjct: 191 P-RLLRPGGIPREAIETCLGRILEAPPRLTATSPLRGPGLLASHYAPRAKVRLDATDLQK 249

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA + FG     +   A  +L+LS +G L EAA +LF Y++  D  G  +IA + IP  
Sbjct: 250 GEAGLDFGG----HFAKAAHTLDLSPSGDLTEAAAHLFTYLRHLDALGLETIAVAPIPET 305

Query: 306 GLGIAINNRLERAAAPRNQS 325
           GLG AIN+RL RAAAPR+ +
Sbjct: 306 GLGEAINDRLRRAAAPRHPA 325


>gi|23501309|ref|NP_697436.1| Sua5/YciO/YrdC family protein [Brucella suis 1330]
 gi|62289392|ref|YP_221185.1| Sua5/YciO/YrdC family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699320|ref|YP_413894.1| Sua5/YciO/YrdC/YwlC family protein:SUA5 [Brucella melitensis biovar
           Abortus 2308]
 gi|161618380|ref|YP_001592267.1| Sua5/YciO/YrdC/YwlC family protein [Brucella canis ATCC 23365]
 gi|163842687|ref|YP_001627091.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis ATCC 23445]
 gi|189023644|ref|YP_001934412.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus S19]
 gi|225626914|ref|ZP_03784953.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti str. Cudo]
 gi|237814879|ref|ZP_04593877.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus str. 2308 A]
 gi|254688706|ref|ZP_05151960.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 6 str.
           870]
 gi|254696834|ref|ZP_05158662.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701213|ref|ZP_05163041.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 5 str. 513]
 gi|254703759|ref|ZP_05165587.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 3 str. 686]
 gi|254707862|ref|ZP_05169690.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis
           M163/99/10]
 gi|254713027|ref|ZP_05174838.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M644/93/1]
 gi|254716618|ref|ZP_05178429.1| Sua5/YciO/YrdC/YwlC protein family [Brucella ceti M13/05/1]
 gi|254729739|ref|ZP_05188317.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 4 str.
           292]
 gi|256031048|ref|ZP_05444662.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis
           M292/94/1]
 gi|256256953|ref|ZP_05462489.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 9 str.
           C68]
 gi|260168179|ref|ZP_05754990.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99]
 gi|260545856|ref|ZP_05821597.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus NCTC 8038]
 gi|260566987|ref|ZP_05837457.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 4 str. 40]
 gi|260754183|ref|ZP_05866531.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 6 str.
           870]
 gi|260757403|ref|ZP_05869751.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 4 str.
           292]
 gi|260761228|ref|ZP_05873571.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883208|ref|ZP_05894822.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 9 str.
           C68]
 gi|261218418|ref|ZP_05932699.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M13/05/1]
 gi|261315352|ref|ZP_05954549.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261320733|ref|ZP_05959930.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M644/93/1]
 gi|261751751|ref|ZP_05995460.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 5 str. 513]
 gi|261754405|ref|ZP_05998114.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 3 str. 686]
 gi|261757638|ref|ZP_06001347.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99]
 gi|265988119|ref|ZP_06100676.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis
           M292/94/1]
 gi|294851786|ref|ZP_06792459.1| translation factor [Brucella sp. NVSL 07-0026]
 gi|297247805|ref|ZP_06931523.1| translation factor [Brucella abortus bv. 5 str. B3196]
 gi|23347198|gb|AAN29351.1| Sua5/YciO/YrdC family protein [Brucella suis 1330]
 gi|62195524|gb|AAX73824.1| Sua5/YciO/YrdC family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615421|emb|CAJ10390.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal
           [Brucella melitensis biovar Abortus 2308]
 gi|161335191|gb|ABX61496.1| Sua5/YciO/YrdC/YwlC family protein [Brucella canis ATCC 23365]
 gi|163673410|gb|ABY37521.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis ATCC 23445]
 gi|189019216|gb|ACD71938.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus S19]
 gi|225618571|gb|EEH15614.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti str. Cudo]
 gi|237789716|gb|EEP63926.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus str. 2308 A]
 gi|260097263|gb|EEW81138.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus NCTC 8038]
 gi|260156505|gb|EEW91585.1| Sua5/YciO/YrdC/YwlC protein family [Brucella suis bv. 4 str. 40]
 gi|260667721|gb|EEX54661.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 4 str.
           292]
 gi|260671660|gb|EEX58481.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674291|gb|EEX61112.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 6 str.
           870]
 gi|260872736|gb|EEX79805.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 9 str.
           C68]
 gi|260923507|gb|EEX90075.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M13/05/1]
 gi|261293423|gb|EEX96919.1| Sua5/YciO/YrdC/YwlC family protein [Brucella ceti M644/93/1]
 gi|261304378|gb|EEY07875.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis
           M163/99/10]
 gi|261737622|gb|EEY25618.1| Sua5/YciO/YrdC/YwlC protein family [Brucella sp. F5/99]
 gi|261741504|gb|EEY29430.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 5 str. 513]
 gi|261744158|gb|EEY32084.1| Sua5/YciO/YrdC/YwlC family protein [Brucella suis bv. 3 str. 686]
 gi|264660316|gb|EEZ30577.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis
           M292/94/1]
 gi|294820375|gb|EFG37374.1| translation factor [Brucella sp. NVSL 07-0026]
 gi|297174974|gb|EFH34321.1| translation factor [Brucella abortus bv. 5 str. B3196]
          Length = 323

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|167038488|ref|YP_001666066.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116883|ref|YP_004187042.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166857322|gb|ABY95730.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929974|gb|ADV80659.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 354

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 101/338 (29%), Positives = 164/338 (48%), Gaps = 26/338 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A + +  G  +A PTETVYG+  +S N  AI++++  K RP  NPLI H++++  
Sbjct: 15  ELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRPQDNPLIVHIAELEQ 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +      V   +  L K FWPGPLTL+     +  +  ++TA + T   R+P       L
Sbjct: 75  IYDLVKEVPQKAKTLMKKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSNTIAHLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    P++ PSAN SG+ S T+  H++   +  ++ +IIDGG   +G+EST++++  EK
Sbjct: 133 IKRAEVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGVESTVLDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
              ILRPG + +E L+  I  VE++  +     E   P+SPGM   HY+P ++V +    
Sbjct: 191 VPVILRPGAVTLEMLREVIGNVEVDPSLLKKPQEDLKPKSPGMKYKHYSPNAEVYIVTGD 250

Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           +      I+                  V           + +    + +  A NLF  ++
Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEIIVVGDRNRPETIAKNLFEVLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             D  G   I   S     +G+AI NRLE+AA  +  S
Sbjct: 311 QFDKKGVDVIFAESFEYDNIGLAIMNRLEKAAGYKEIS 348


>gi|46908713|ref|YP_015102.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47094309|ref|ZP_00232012.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b
           H7858]
 gi|226225089|ref|YP_002759196.1| yeast translation initiation protein [Listeria monocytogenes
           Clip81459]
 gi|254825336|ref|ZP_05230337.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           J1-194]
 gi|254853930|ref|ZP_05243278.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           R2-503]
 gi|254932217|ref|ZP_05265576.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262]
 gi|254993431|ref|ZP_05275621.1| yeast translation initiation protein [Listeria monocytogenes FSL
           J2-064]
 gi|255519763|ref|ZP_05387000.1| yeast translation initiation protein [Listeria monocytogenes FSL
           J1-175]
 gi|300764959|ref|ZP_07074947.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017]
 gi|46881985|gb|AAT05279.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017319|gb|EAL08149.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b
           H7858]
 gi|225877551|emb|CAS06265.1| Putative yeast translation initiation protein [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607318|gb|EEW19926.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           R2-503]
 gi|293583772|gb|EFF95804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes HPB2262]
 gi|293594579|gb|EFG02340.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           J1-194]
 gi|300514259|gb|EFK41318.1| hypothetical protein LMHG_11591 [Listeria monocytogenes FSL N1-017]
 gi|328465145|gb|EGF36413.1| translation initiation protein [Listeria monocytogenes 1816]
 gi|328471149|gb|EGF42053.1| translation initiation protein [Listeria monocytogenes 220]
 gi|332312971|gb|EGJ26066.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
           Scott A]
          Length = 345

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 109/330 (33%), Positives = 171/330 (51%), Gaps = 19/330 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A + L +G  +A PTETVYGL  D+ N  A++++YE K RP+ NPLI H++    +  
Sbjct: 19  QEAAKLLRSGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDP 78

Query: 73  HASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
             +  P+ ++ L + FWPGPLT++L L   + +    +A L T   R+P       LI+ 
Sbjct: 79  FVASYPVKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVSLALIDA 137

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++   +  V 
Sbjct: 138 ANIPVAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCSLDIPV- 195

Query: 191 ILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           ILRPGG+  E +++ I           ET  P++PGM  +HYAP++ V L    +   ++
Sbjct: 196 ILRPGGVTKEQIEQIIGPVDIATNNTKETEKPKAPGMKYTHYAPKAPVYLIEGSIQFWQS 255

Query: 249 LI--------RFGNVPIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIADDSGASS 296
            I        + G +  K + N + +            L E A +L+  ++  D +    
Sbjct: 256 EINKAEAANKKLGILATKELINQLNTSGTIEITGSINALDEIATSLYKGLRAFDHADVDV 315

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           I     P   LG AI NRLE+AA  R   +
Sbjct: 316 IFAEVYPETELGAAIMNRLEKAAGNRRIRE 345


>gi|306842310|ref|ZP_07474970.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO2]
 gi|306287567|gb|EFM59023.1| Sua5/YciO/YrdC/YwlC family protein [Brucella sp. BO2]
          Length = 323

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 144/319 (45%), Positives = 193/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTDRPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   IG+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGIGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|307265643|ref|ZP_07547196.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326389253|ref|ZP_08210821.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306919287|gb|EFN49508.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325994616|gb|EGD53040.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 354

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 101/338 (29%), Positives = 162/338 (47%), Gaps = 26/338 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A   +  G  +A PTETVYG+  +S N  A+++++  K RP  NPLI H++++  
Sbjct: 15  ELIDFAANVIREGGLVAFPTETVYGIGANSFNEEAVKKIFIAKGRPQDNPLIVHIAELKQ 74

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           +       P     L K FWPGPLTL+     +  +  ++TA + T   R+P       L
Sbjct: 75  IYDLVEDVPQKAKTLMKKFWPGPLTLIF--KKSEKVPYVNTAGMDTVAIRMPSNPIAHLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    P++ PSAN SG+ S T+  H++   +  ++ +IIDGG   +G+EST++++  EK
Sbjct: 133 IKRAEVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGVESTVLDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
              ILRPG + +E LK  I  VE++  +     E   P+SPGM   HY+P ++V +    
Sbjct: 191 VPVILRPGAVTLEMLKEVIGNVEVDPSLLKKPKEDLKPKSPGMKYKHYSPNAEVYIVTGD 250

Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           +      I+                  V           + +    + +  A NLF  ++
Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEIIVVGDRNRPETIAKNLFAVLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             D  G   I   S     +G+AI NRLE+AA  +  S
Sbjct: 311 QFDKKGVDVIFAESFEYDNIGLAIMNRLEKAAGYKEIS 348


>gi|254693189|ref|ZP_05155017.1| Sua5/YciO/YrdC/YwlC protein family [Brucella abortus bv. 3 str.
           Tulya]
 gi|261213430|ref|ZP_05927711.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915037|gb|EEX81898.1| Sua5/YciO/YrdC/YwlC family protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 323

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 192/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPAAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|254437009|ref|ZP_05050503.1| Sua5/YciO/YrdC/YwlC family protein, putative [Octadecabacter
           antarcticus 307]
 gi|198252455|gb|EDY76769.1| Sua5/YciO/YrdC/YwlC family protein, putative [Octadecabacter
           antarcticus 307]
          Length = 315

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 143/318 (44%), Positives = 182/318 (57%), Gaps = 13/318 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD   L KA   L  G  +A PTETVYGL VD+ N  A+ RLY  K RP+ NPLI H+ 
Sbjct: 10  VTDRTELDKAACVLAGGGLVAFPTETVYGLGVDACNSDAVARLYLAKGRPSFNPLIVHIG 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            I   ++    D  +L LA+ FWPG LTLVL L   + I PL TA L T   RVP     
Sbjct: 70  SIEAAQQFVDFDDTALALAQAFWPGALTLVLPLRHDSTISPLVTAGLGTLAIRVPDHGVA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +L+  +G P+A PSAN SGQ+S T   H+    +   I  +IDGG   +GLESTI+ ++
Sbjct: 130 NRLLAAFGGPIAAPSANPSGQVSPTKFAHV-RDLMSGRIDGVIDGGDCGVGLESTIIAMK 188

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
                 +LR GGL +E ++ A+   L     ETS P SPG L SHYAP+  VRL A  V 
Sbjct: 189 --PVPTLLRAGGLPVEAIEAALGYNLA-LTGETSAPSSPGQLASHYAPKGTVRLNARSVE 245

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             E L+ FG V           +NLS +G L +AA  LF+ +   +  GA+ IA S IP+
Sbjct: 246 TGETLLGFGPVEA--------VINLSSSGDLVQAAAGLFDALHQLNAMGAARIAVSPIPD 297

Query: 305 HGLGIAINNRLERAAAPR 322
           HGLG AIN+RL RAAAPR
Sbjct: 298 HGLGRAINDRLRRAAAPR 315


>gi|16804579|ref|NP_466064.1| hypothetical protein lmo2541 [Listeria monocytogenes EGD-e]
 gi|224503219|ref|ZP_03671526.1| hypothetical protein LmonFR_11993 [Listeria monocytogenes FSL
           R2-561]
 gi|255026494|ref|ZP_05298480.1| hypothetical protein LmonocytFSL_09443 [Listeria monocytogenes FSL
           J2-003]
 gi|255028536|ref|ZP_05300487.1| hypothetical protein LmonL_03806 [Listeria monocytogenes LO28]
 gi|284802979|ref|YP_003414844.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578]
 gi|284996120|ref|YP_003417888.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923]
 gi|16412029|emb|CAD00619.1| lmo2541 [Listeria monocytogenes EGD-e]
 gi|284058541|gb|ADB69482.1| hypothetical protein LM5578_2736 [Listeria monocytogenes 08-5578]
 gi|284061587|gb|ADB72526.1| hypothetical protein LM5923_2685 [Listeria monocytogenes 08-5923]
          Length = 345

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 19/336 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++    ++A + L  G  +A PTETVYGL  D+ N  A++++YE K RP+ NPLI H++ 
Sbjct: 13  SNQAIFQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIAR 72

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
              + +  AS    ++ L + FWPGPLT++L L   + +    +A L T   R+P     
Sbjct: 73  REQMDQFVASYPAKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVS 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI T   P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++  
Sbjct: 132 LALIGTANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCS 190

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            E  + ILRPGG+  E +++ I           ET  P++PGM  +HYAP++ V L    
Sbjct: 191 LEIPI-ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249

Query: 243 VNPREALI--------RFGNVPIKNIENAI-ISLNLSKTGK---LKEAAFNLFNYMKIAD 290
               ++ I        + G +  K + N +  S  +  TG    L E A +L+  ++  D
Sbjct: 250 TQFWQSEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFD 309

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            +    I     P   LG AI NRLE+AA  R  ++
Sbjct: 310 HADVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE 345


>gi|255016728|ref|ZP_05288854.1| hypothetical protein LmonF_00646 [Listeria monocytogenes FSL
           F2-515]
          Length = 344

 Score =  355 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 19/336 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++    ++A + L  G  +A PTETVYGL  D+ N  A++++YE K RP+ NPLI H++ 
Sbjct: 12  SNQAIFQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIAR 71

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
              + +  AS    ++ L + FWPGPLT++L L   + +    +A L T   R+P     
Sbjct: 72  REQMDQFVASYPAKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVS 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI T   P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++  
Sbjct: 131 LALIGTANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCS 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            E  + ILRPGG+  E +++ I           ET  P++PGM  +HYAP++ V L    
Sbjct: 190 LEIPI-ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGS 248

Query: 243 VNPREALI--------RFGNVPIKNIENAI-ISLNLSKTGK---LKEAAFNLFNYMKIAD 290
               ++ I        + G +  K + N +  S  +  TG    L E A +L+  ++  D
Sbjct: 249 TQFWQSEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFD 308

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            +    I     P   LG AI NRLE+AA  R  ++
Sbjct: 309 HADVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE 344


>gi|256060542|ref|ZP_05450710.1| Sua5/YciO/YrdC/YwlC protein family [Brucella neotomae 5K33]
 gi|261324536|ref|ZP_05963733.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33]
 gi|261300516|gb|EEY04013.1| Sua5/YciO/YrdC/YwlC family protein [Brucella neotomae 5K33]
          Length = 323

 Score =  355 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 143/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VYLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPEASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|15964621|ref|NP_384974.1| hypothetical protein SMc00984 [Sinorhizobium meliloti 1021]
 gi|307309367|ref|ZP_07589030.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti BL225C]
 gi|307320103|ref|ZP_07599524.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti AK83]
 gi|15073799|emb|CAC45440.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306894318|gb|EFN25083.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti AK83]
 gi|306900236|gb|EFN30854.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium meliloti BL225C]
          Length = 324

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 158/319 (49%), Positives = 211/319 (66%), Gaps = 2/319 (0%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I    A+ KAC  L  G P+AIPTETVYGLA D+  P AI R+YE+K RP  NPLICHV
Sbjct: 8   RIEPERAIEKACAVLSDGEPVAIPTETVYGLAADATTPDAISRIYEMKGRPRFNPLICHV 67

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D++M + H + DP+S  LA+ FWPGPLTL+L     + +H L++A L T   R+P GF+
Sbjct: 68  CDLAMAEAHVTFDPVSRRLAEAFWPGPLTLILPQRRESTVHTLASAGLDTLGIRMPDGFS 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++I  +G PLA PSAN SG+IS T+  H+  + +   + LI+D G + IGLESTIV V+
Sbjct: 128 RRVIARFGRPLAAPSANTSGKISPTSAAHV-QADLGSRLKLILDAGPAAIGLESTIVKVE 186

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
              ++R+LRPGGL+   ++    + +E      +  ++PGML SHYAP + VRL A  V 
Sbjct: 187 -NGRLRLLRPGGLDAAEIEALTGLAIERPEAAGAVIEAPGMLASHYAPGAAVRLDADEVR 245

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             EALIRFG   +    +A I L+LS  G L+EAA NLF+YMK AD SGA++IAF  IP+
Sbjct: 246 KGEALIRFGGEALPGEADAAIVLDLSPGGSLREAAANLFDYMKKADASGAATIAFGPIPS 305

Query: 305 HGLGIAINNRLERAAAPRN 323
            GLG AI +RL+RAAAPR 
Sbjct: 306 EGLGEAIIDRLQRAAAPRG 324


>gi|319650889|ref|ZP_08005026.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2]
 gi|317397487|gb|EFV78188.1| Sua5/yciO/yrdC/ywlC family protein [Bacillus sp. 2_A_57_CT2]
          Length = 347

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 105/324 (32%), Positives = 161/324 (49%), Gaps = 18/324 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L     +A PTETVYGL  ++ N  A+R+++E K RP+ NPLI H++D   +   
Sbjct: 23  QAADLLKKNEVVAFPTETVYGLGGNAENDEAVRKIFEAKGRPSDNPLIIHIADKGKLDAF 82

Query: 74  A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
              +   +  L   FWPGPLTL+ +L      H  +TA+L T   R+P       L+   
Sbjct: 83  VTEIPQNAQALMDRFWPGPLTLIFNLKEGVLSH-YATADLSTVAVRMPDHPVALALLNKT 141

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSANRSG+ S T   H+    +   I  ++DGG + +G+EST+V+   +  V I
Sbjct: 142 GLPIAAPSANRSGRPSPTTADHVW-EDLNGRIAGLVDGGPTGVGVESTVVDCTGDVPV-I 199

Query: 192 LRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-------- 241
           LRPGG+  E L+ A+   +      DE+  P+SPGM   HYAP + + L           
Sbjct: 200 LRPGGITREQLEEAVGEIIVDPALADESQAPKSPGMKYRHYAPDAPLYLVEGTKEDIQYF 259

Query: 242 HVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
             + ++  +  G +          A       +  KL+  A +L+  ++  + + A  I 
Sbjct: 260 VEDKKKEGLSVGVLTTSENLEFYRADFIYACGQRDKLETVASSLYEALRYFNTTNADIIF 319

Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322
               P  G+G AI NRL +AA  R
Sbjct: 320 CEMFPGEGVGHAIMNRLMKAAGHR 343


>gi|46200975|ref|ZP_00207919.1| COG0009: Putative translation factor (SUA5) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 328

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 123/306 (40%), Positives = 175/306 (57%), Gaps = 10/306 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A PTETVYGL  D+ +  A+  +++ K RP+ NPLI HVS +        +   +
Sbjct: 32  EGGLVAFPTETVYGLGGDATSDLAVAAIFKAKGRPSFNPLIAHVSSLDQAAALVEIGADA 91

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPS 139
             LA+ FWPGPLTLVL   + + +  L++A L +   R+P       LI+  G PLA PS
Sbjct: 92  HRLAERFWPGPLTLVLKRRAASPVSLLASAGLDSVAVRMPDHPTALALIKAAGRPLAAPS 151

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG++S T   H+ +  +   I +++DGG  ++G+EST++++  E+   +LRPGG+  
Sbjct: 152 ANLSGRVSPTRADHV-AQCLDGRIAMVLDGGPCRVGVESTVLDLT-EEPPTLLRPGGVTA 209

Query: 200 ETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
           E L+  +   L   ++    P+SPG L SHYAP   VRL A+   P EAL+ FG  P   
Sbjct: 210 EELEAVLGRPLRRALETPDAPRSPGQLASHYAPSLPVRLDALAAEPGEALLGFGIAP--- 266

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                  LNLS  G L EAA +LF  ++  D      IA   IP  GLG+AIN+RL+RAA
Sbjct: 267 ----ECVLNLSPKGDLDEAAAHLFAMLRALDRPDYLGIAVMPIPERGLGLAINDRLKRAA 322

Query: 320 APRNQS 325
           APR+ S
Sbjct: 323 APRSPS 328


>gi|167038769|ref|YP_001661754.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514]
 gi|300913646|ref|ZP_07130963.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561]
 gi|307723339|ref|YP_003903090.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513]
 gi|166853009|gb|ABY91418.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X514]
 gi|300890331|gb|EFK85476.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X561]
 gi|307580400|gb|ADN53799.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter sp. X513]
          Length = 354

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 102/338 (30%), Positives = 164/338 (48%), Gaps = 26/338 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A + +  G  +A PTETVYG+  +S N  AI++++  K RP  NPLI H++++  
Sbjct: 15  ELIDFAAKVIKEGGLVAFPTETVYGIGANSFNEEAIKKIFIAKGRPQDNPLIVHIAELEQ 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +      V   +  L K FWPGPLTL+     +  +  ++TA + T   R+P       L
Sbjct: 75  IYDLVKEVPQKAKTLMKKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSNTIAHLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    P++ PSAN SG+ S T+  H++   +  ++ +IIDGG   +G+EST++++  EK
Sbjct: 133 IKRAEVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGVESTVLDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
              ILRPG + +E LK  I  VE++  +     E   P+SPGM   HY+P ++V +    
Sbjct: 191 VPVILRPGAVTLEMLKEVIGNVEVDPSLLKKPKEDLKPKSPGMKYKHYSPNAEVYIVTGD 250

Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           +      I+                  V           + +    + +  A NLF  ++
Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYEKGEIIVVGDRNRPETIAKNLFAVLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             D  G   I   S     +G+AI NRLE+AA  +  S
Sbjct: 311 QFDKKGVDVIFAESFGYDNIGLAIMNRLEKAAGYKEIS 348


>gi|168185917|ref|ZP_02620552.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum C str.
           Eklund]
 gi|169296125|gb|EDS78258.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum C str.
           Eklund]
          Length = 350

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 25/338 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   D   + ++ E +  G  +  PTETVYGL  ++ +  A+++++  K RP  NPLI H
Sbjct: 10  LDNLDEKVMEESGEIIRNGGLVVFPTETVYGLGANALDSEAVKKIFVAKGRPQDNPLIVH 69

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           ++D +M     S+ P++  +   FWPGPLT+++       +  +++A L +   R+P   
Sbjct: 70  IADFNMNDLVNSIPPIAEKIINKFWPGPLTVIMKKSPK--VPDVTSAGLDSIGIRMPSNL 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++LI+  G P+A PSAN SG+ S TN++  +   +  ++  II G    +GLESTIV+
Sbjct: 128 VARELIKKAGVPIAAPSANISGKPSPTNIERCI-EDLDGKVESIIGGEKCDVGLESTIVD 186

Query: 183 VQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
              E    ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ V+
Sbjct: 187 CTVE-PPCILRPGGITLEMLKEVHPDIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVK 245

Query: 238 LRAIHVNPREALIR------------FGNVPIKNIENA---IISLNLSKTGKLKEAAFNL 282
           + A ++    A I              G +      N+       +L     L   A NL
Sbjct: 246 IIAGNLEKSIAKINEMVQNYIDDDKIVGIMSTDEHVNSYSHATVKSLGSRKDLHSIAHNL 305

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  +   D      I   +     +GIAI NRL++AA 
Sbjct: 306 FKVLSEFDSEKVDIILSEAFEEEEIGIAIMNRLKKAAG 343


>gi|157694091|ref|YP_001488553.1| hypothetical protein BPUM_3340 [Bacillus pumilus SAFR-032]
 gi|157682849|gb|ABV63993.1| hypothetical protein BPUM_3340 [Bacillus pumilus SAFR-032]
          Length = 351

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 106/330 (32%), Positives = 165/330 (50%), Gaps = 18/330 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   L     +A PTETVYGL  +++   A+ ++YE K RP+ NPLI H++++  +
Sbjct: 22  QIEQAALLLKQNEVVAFPTETVYGLGANAKETEAVMKIYEAKGRPSDNPLIVHIAEVEQL 81

Query: 71  KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            + A +    +  L K FWPG LT+VL       +    TA L T   R+P      +LI
Sbjct: 82  HEFAQIESERAKALMKAFWPGALTIVLP-CKLGTLSKQVTAGLSTVGVRMPDHPIALELI 140

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            T G P+A PSANRSG+ S T   H+ +S +   I  I+DGG + IG+EST+V+   E  
Sbjct: 141 RTAGLPIAAPSANRSGKPSPTQADHV-ASDLDGRIAGIVDGGSTGIGVESTVVSCVDEIP 199

Query: 189 VRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP- 245
           V ILRPGG+  E L+  +           +   P SPGM  +HYAP +++ L        
Sbjct: 200 V-ILRPGGITKEALEEVVGTVSIDPGLTKKDEAPVSPGMKYTHYAPEAKMYLFHGSDEEL 258

Query: 246 -------REALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
                  +   ++ G +  +  ++   A +  +     K +  A NL+  ++  D++   
Sbjct: 259 QRHIQTYQTEGLKVGVLTTEEKKSLFAADVVFSCGWREKPETIAANLYRVLRQFDETDVD 318

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            I   +    G+G AI NRL++AA  R  S
Sbjct: 319 VIISETFSKQGVGSAIMNRLQKAAGGRTLS 348


>gi|256112929|ref|ZP_05453837.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994364|ref|ZP_06106921.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765477|gb|EEZ11266.1| Sua5/YciO/YrdC/YwlC family protein [Brucella melitensis bv. 3 str.
           Ether]
          Length = 323

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 142/319 (44%), Positives = 194/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I      +A PSAN SG+IS T+   +    +  +I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSSVAAPSANTSGRISPTSAAAVAGD-LGGQIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    + ++  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHSAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|260437528|ref|ZP_05791344.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM
           2876]
 gi|292810161|gb|EFF69366.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio crossotus DSM
           2876]
          Length = 351

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 113/340 (33%), Positives = 167/340 (49%), Gaps = 26/340 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I +   ++ A E +  G  +A PTETVYGL  DS +P A  ++Y  K RP+ NPLI H+
Sbjct: 12  EIENDKIIKTAAEIISRGGLVAFPTETVYGLGGDSFDPAAAEKIYAAKGRPSDNPLIVHI 71

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           S+   + K +  V  ++  LA  FWPGPLT+++    +  +    T  L T   R+P   
Sbjct: 72  SEFDDIYKLSDEVPEIAKVLADKFWPGPLTMIVKKNKSVPV--TVTGGLDTVAVRLPSHK 129

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             +KLI+  G  +A PSAN SG+ S T  KH++   +   I +IID G  +IGLESTIV+
Sbjct: 130 VARKLIKESGTFIAAPSANISGRPSPTTAKHVI-DDLNGRIDMIIDDGSIEIGLESTIVD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQV- 236
           +  +  V ILRPG +  E L+  +        L   V E   P++PGM   HYAP++++ 
Sbjct: 189 LTEDVPV-ILRPGYVTFEMLEETVGKVRLDKALMTGVKENVKPKAPGMKYRHYAPKAELT 247

Query: 237 -----------RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNL 282
                      R+  +         + G +  +   + I S   L L  +    E A NL
Sbjct: 248 IIEGSPEKTVARIEELVKEAERKGQKAGIMLSEENFDKICSDYKLCLGSSSDENEIARNL 307

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           F  ++  DD     I        G+G AI NRL +AA  +
Sbjct: 308 FACLRKFDDMDIDVIFSEGFSEEGIGQAIMNRLLKAAGHK 347


>gi|148559471|ref|YP_001258429.1| Sua5/YciO/YrdC family protein [Brucella ovis ATCC 25840]
 gi|148370728|gb|ABQ60707.1| Sua5/YciO/YrdC family protein [Brucella ovis ATCC 25840]
          Length = 323

 Score =  353 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 142/319 (44%), Positives = 193/319 (60%), Gaps = 7/319 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCSVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL    V
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRLAVSDV 244

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  + +GA++IA   IP
Sbjct: 245 KPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLNATGAATIAVEPIP 304

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL+RAAAPR
Sbjct: 305 LDGLGEAINDRLKRAAAPR 323


>gi|253681142|ref|ZP_04861945.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum D str.
           1873]
 gi|253562991|gb|EES92437.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum D str.
           1873]
          Length = 349

 Score =  353 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 100/338 (29%), Positives = 169/338 (50%), Gaps = 25/338 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   D   + +A + L  G  +A PTETVYGL  ++ +  A+++++  K RP  NPLI H
Sbjct: 10  LKNLDVKVIEEAGKALREGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVH 69

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           ++D ++      +  ++  + K FWPGPLT+++    +  I  +++A L++   R+P   
Sbjct: 70  IADFNLDNLVEEIPVIAKKIMKKFWPGPLTIIM--KKSNKIPYVTSAGLESVGIRMPSNV 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++LI+  G P+A PSAN SG+ S TN++  +   +   +  II G    +GLESTIV+
Sbjct: 128 VARELIKKSGVPIAAPSANISGKPSPTNIERCI-EDLNGRVEYIIGGEKCDVGLESTIVD 186

Query: 183 VQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
                   +LRPGG+ +E L+       I   +    D+   P++PGM   HYAP++ V+
Sbjct: 187 CTVN-PPCVLRPGGITLEMLREIEPEIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVK 245

Query: 238 LRAIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNL 282
           + A +++   A I            + G +  +      +  I  +L     L   A NL
Sbjct: 246 IIAGNLSKSIAKINEMVQNYIDDGKKVGIMATEETRFKYSNAIIKSLGSRNDLYSIAHNL 305

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  +   D+     I   +     +GIAI NRL++AA 
Sbjct: 306 FKILSEFDNENVDIILSEAFQEEEIGIAIMNRLKKAAG 343


>gi|90961568|ref|YP_535484.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius
           UCC118]
 gi|227890654|ref|ZP_04008459.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ATCC
           11741]
 gi|90820762|gb|ABD99401.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius
           UCC118]
 gi|227867592|gb|EEJ75013.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius ATCC
           11741]
 gi|300214393|gb|ADJ78809.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius CECT
           5713]
          Length = 336

 Score =  353 bits (908), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 116/338 (34%), Positives = 173/338 (51%), Gaps = 24/338 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I  I   +   +A + L  G  +A PTETVYGL  D+ N  A++R+Y  K RP+ NPL
Sbjct: 1   MLITKIYKPSEFNEAAKELRLGELVAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VS + MVK+   S+      + + FWPG LT+VL +   + +    T  LKTA FR+
Sbjct: 61  IVTVSSLEMVKRFVPSLSKEVEKIIEKFWPGSLTIVLKIKDGS-LSKTVTGGLKTAAFRM 119

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN SG+ S T  +H+    +   I  I+D G + +G+ES
Sbjct: 120 PKNETTLNLITALGNPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTDVGVES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E    ILRPG +  E +++ I  E+   ++ V E   P++PGM   HYAP +Q
Sbjct: 179 TIIDMSTEIP-TILRPGAVTAEEIEKVIGKEVYSDKHKVKENEIPKAPGMKYKHYAPSAQ 237

Query: 236 VRLR-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
           V +            A     +  ++    V  K +EN   SL       ++ AA NLF 
Sbjct: 238 VLIVNKDNWNSALQWANENKNQVGILADDEVLSKALENKTYSLG----ENVESAAKNLFA 293

Query: 285 YMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  DD      I   + P  G+G+A  NRL+++A  
Sbjct: 294 GLRYFDDDNQIKYILAEAFPEEGVGLAYMNRLKKSAGN 331


>gi|331270448|ref|YP_004396940.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum
           BKT015925]
 gi|329126998|gb|AEB76943.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum
           BKT015925]
          Length = 349

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/338 (30%), Positives = 170/338 (50%), Gaps = 25/338 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   D   + +A E L  G  +A PTETVYGL  ++ +  A+++++  K RP  NPLI H
Sbjct: 10  LKNLDVKVIEEAGEVLREGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVH 69

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           ++D ++      V  ++  + + FWPGPLTL++    + +I  +++A L++   R+P   
Sbjct: 70  IADFNLDGLVEEVPSIAKKIMEKFWPGPLTLIM--KKSREIPYVTSAGLESVGIRMPSNI 127

Query: 124 -TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++LI+  G P+A PSAN SG+ S TN++  +   + + +  II G   ++GLESTIV+
Sbjct: 128 VARELIKKSGVPIAAPSANISGKPSPTNIERCI-EDLNERVEYIIGGEKCEVGLESTIVD 186

Query: 183 VQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
                   +LRPGG+ +E L+       I   +    D+   P++PGM   HYAP++ V+
Sbjct: 187 CTIN-PPCVLRPGGITLEMLREIEPEIYIDPAIMKKADKDFKPKAPGMKYRHYAPKAPVK 245

Query: 238 LRAIHVNPREALI------------RFGNVPIKNIENA---IISLNLSKTGKLKEAAFNL 282
           + A ++    A I            + G +  +  +      I  +L     L   A NL
Sbjct: 246 IIAGNLVKSIAKINEMVQNYIDDGKKVGIMATEETKGKYSNAIIKSLGSREDLHTIAHNL 305

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  +   D      I   +     +GIAI NRL++AA 
Sbjct: 306 FKTLSEFDSENVDIILSEAFKEEEIGIAIMNRLKKAAG 343


>gi|323704817|ref|ZP_08116394.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535743|gb|EGB25517.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 349

 Score =  353 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 106/339 (31%), Positives = 171/339 (50%), Gaps = 26/339 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N + +A   L  G  +A PTETVYG+  +S NP A+ +++  K RP  NPLI H+S+ 
Sbjct: 13  DINLIDEAASILLNGGLVAFPTETVYGIGANSLNPDAVAKIFIAKGRPQDNPLILHISEF 72

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + K+A  V   +L LA+ FWPGPLT++ +   +  +  ++TA + T   R+P      
Sbjct: 73  QDLFKYAKNVPNDALKLARQFWPGPLTMIFE--KSDIVPSINTAGMNTVAIRMPSNKIAH 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G P++ PSAN SG+ S T+  H++S  +   + +IIDGG   +G+EST+V++  
Sbjct: 131 TLIKRAGIPVSAPSANLSGKPSPTDASHVISD-LYGRVDMIIDGGSCDVGVESTVVDMTG 189

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDET----STPQSPGMLKSHYAPRSQVRLRA 240
           E    ILRPGG+  E +   +  VE++  V +       P+SPGM   HY+P ++V +  
Sbjct: 190 EIP-TILRPGGITKEMIMGVVGSVEVDPIVYKKPSLDVKPKSPGMKYKHYSPDAEVYIVK 248

Query: 241 IHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNY 285
            ++      I            + G +  +           L +    + +  A NLF  
Sbjct: 249 GNIGDVIKKIQELTEFQLNNGKKVGIMATEQTCEKYRNGEVLVVGNRERPETIAKNLFRC 308

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           ++  D  G   +         +G+AI NRLE+AA  +  
Sbjct: 309 LREFDKKGVDVVYAEGFDYDEIGLAIMNRLEKAAGYKEI 347


>gi|14590350|ref|NP_142416.1| hypothetical protein PH0435 [Pyrococcus horikoshii OT3]
 gi|3256838|dbj|BAA29521.1| 340aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 340

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 120/343 (34%), Positives = 182/343 (53%), Gaps = 28/343 (8%)

Query: 1   MQIM----SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M I+    S  D   LR A + +  G  +A PTETVYGL  D+ N  A+RR++E K RPA
Sbjct: 1   MTIIINMRSGVDEVKLRIAAKLIREGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPA 60

Query: 57  MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
            NPLI H++  S V + A  V   +  L + FWPGPLT+VL       +  ++T  L T 
Sbjct: 61  DNPLILHIAKFSQVYELAREVPEEAKVLVERFWPGPLTIVLPR--KDVVPDVTTGGLDTV 118

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      KLIE  G P+A PSAN SG+ S T+ +H+ +     +I  IIDGG ++I
Sbjct: 119 AIRMPANEIALKLIELSGKPIAAPSANISGKPSPTSAEHV-ADDFYGKIECIIDGGETRI 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYA 231
           G+EST++++  E    +LRPGGL +E +++ I  V +   V   +  TP+SPGM   HYA
Sbjct: 178 GVESTVIDLT-EHPPVLLRPGGLPLEEIEKVIGKVRIHPAVFGKKVDTPKSPGMKYKHYA 236

Query: 232 PRSQV------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279
           P ++V            ++  +    +E   + G +  ++  NA     L     ++E A
Sbjct: 237 PNAEVIVVEGPREKVKGKITELVKELKERGKKVGVIGSESY-NADEFFFLGS--SVEEVA 293

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            NLF  ++  D +G   +    +   GLG+A+ NRL +A+  +
Sbjct: 294 KNLFKALRYMDKAGVDVVIAEGVEERGLGLAVMNRLRKASGYK 336


>gi|51891213|ref|YP_073904.1| putative translation factor [Symbiobacterium thermophilum IAM
           14863]
 gi|51854902|dbj|BAD39060.1| putative translation factor [Symbiobacterium thermophilum IAM
           14863]
          Length = 349

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/335 (33%), Positives = 166/335 (49%), Gaps = 24/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   + +A   L AG  +A PTETVYGL  ++ +  A+ R++  K RP+ NPLI H++D 
Sbjct: 15  EPEVVAQAAAILRAGDVVAFPTETVYGLGANALSSEAVARIFAAKGRPSDNPLIVHIADT 74

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + ++     V P +  L +  WPGPLTLV+       + P  TA L T   R+P      
Sbjct: 75  AQLEGLVESVPPTAERLMERCWPGPLTLVMRKGPA--VPPEVTAGLDTVGIRMPDHPVAL 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T  +H+L   +   IP ++DGG + +G+EST++++  
Sbjct: 133 ALIRAAGVPIAAPSANASGRPSPTTAEHVL-EDLAGSIPAVLDGGETGVGVESTVLDMTT 191

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET---STPQSPGMLKSHYAPRSQVRLRAIH 242
           +  + ILRPGGL  E L+ AI   +     E      P+SPGM   HYAP++ + L    
Sbjct: 192 DPPM-ILRPGGLPREELEAAIGPVVLAPGVEGGTVERPRSPGMKYRHYAPQAPLILVEGP 250

Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           V   +  IR                 +   + +  A + L     G L   A +LF  ++
Sbjct: 251 VLEMQEKIRDLAMEYAEEGKRVGILCSAESRGVYVAPVILEYGARGDLAGIASDLFGTLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D      I    +P  GLG+AI NRL RAA  R
Sbjct: 311 AFDRHQVDVILAEGVPEEGLGLAIMNRLRRAAGGR 345


>gi|327441446|dbj|BAK17811.1| putative translation factor [Solibacillus silvestris StLB046]
          Length = 343

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/335 (33%), Positives = 183/335 (54%), Gaps = 17/335 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +S    +A + L+ G  +A PTETVYGL   + N  A+++++  K RP+ NPLI H+ 
Sbjct: 12  VDNSENYTQAVDLLNNGEIVAFPTETVYGLGAVATNEQAVKKIFAAKGRPSDNPLIVHIG 71

Query: 66  DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            +  V  +  ++  ++ +  + FWPGPLTLV+D+     + P  TA L T   R+P    
Sbjct: 72  TVEEVSLYTTNISEVAQNCMEAFWPGPLTLVMDVKPNV-LAPSVTAGLDTVGIRMPDHPV 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L++T   PLA PSANRSG+ S T  +H+    +   IP I+DGG++ IGLEST+++V
Sbjct: 131 ALELLQTLKKPLAAPSANRSGKPSPTKAEHVF-EDLQNIIPCILDGGVTGIGLESTVLDV 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240
             +  V ILRPGG+  E L+  I   +E  +++    STP++PGM  +HYAP + V L  
Sbjct: 190 TLDTPV-ILRPGGVTKEMLEAVIGPVVEPSLEQQKIDSTPKAPGMKYTHYAPDAPVYLIE 248

Query: 241 IHVNPREALI-------RFGNVPIKNIE--NAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
            +    E  I       +   +  +N E   A    +      L++ + +L++ ++  D 
Sbjct: 249 ANKKAIETAIAELKPVHKVALLAPQNFEEIEADYYFSFGSAHDLEQMSASLYDALRSCDK 308

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           + A+ I  ++    G+G AI NRLE+AA  +  S 
Sbjct: 309 TDATIILATATSKTGVGTAIMNRLEKAAGGKWYSL 343


>gi|118444234|ref|YP_879011.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium novyi NT]
 gi|118134690|gb|ABK61734.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium novyi NT]
          Length = 350

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/334 (30%), Positives = 166/334 (49%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++  E + +G  +A PTETVYGL  ++ +  A+++++  K RP  NPLI H++D 
Sbjct: 14  DEKVMKETGEIIRSGGLVAFPTETVYGLGANALDSEAVKKIFIAKGRPQDNPLIVHIADF 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
           +M      +  ++  +   FWPGPLTL++    +  I  +++A L +   R+P     ++
Sbjct: 74  NMDDLVKDIPAIAKKIMDKFWPGPLTLIM--KKSDKIPDVTSAGLDSIGIRMPSSIVARE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ S TN++  +   +  ++  II G    +GLESTIV+   E
Sbjct: 132 LIKKAGVPIAAPSANISGKPSPTNIERCI-EDLDGKVEAIIGGEKCDVGLESTIVDCTVE 190

Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
               ILRPGG+ +E L+       I   +    D+   P++PGM   HYAP++ V++ A 
Sbjct: 191 -PPCILRPGGITLEMLREIEPNIYIDPAIMKKADKNLKPKAPGMKYRHYAPKAPVKIVAG 249

Query: 242 HVNPREALIR------------FGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYM 286
           ++    A I              G +     ++     I  +L     L   A NLF  +
Sbjct: 250 NLEKSIAKINEMVQNYIDDGKVVGIMSTDEHKDNYSNAIVKSLGSRKDLNSVAHNLFKTL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              D      I   +     +GIAI NRL++AA 
Sbjct: 310 SEFDSEKVDIIISEAFEEEEIGIAIMNRLKKAAG 343


>gi|154687810|ref|YP_001422971.1| YwlC [Bacillus amyloliquefaciens FZB42]
 gi|154353661|gb|ABS75740.1| YwlC [Bacillus amyloliquefaciens FZB42]
          Length = 346

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 174/333 (52%), Gaps = 19/333 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S TD   + +A E L     +A PTETVYGL  ++ N  A+ ++YE K RP+ NPLI H
Sbjct: 14  LSTTDP-QITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +S IS + +  S +   +  L KLFWPG LTLVL       + P  TA L+T   R+P  
Sbjct: 73  ISHISQLDRFISHIPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI + G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST++
Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV--- 236
           +   ++ V +LRPGG+  E ++ A    L  +   +E   P SPGM  +HYAP + +   
Sbjct: 191 SCTGKQPV-LLRPGGVTKEQIESAAGPILVDKGLTEEDEVPISPGMKYTHYAPSAPMAIA 249

Query: 237 -----RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                R++ +    +    R G +  +       A  +    +   L+  A  L++ ++ 
Sbjct: 250 VGGARRIQELADAYKSRGKRIGILTTEENADSYQADYTKVCGRRADLETVASALYDALRS 309

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            D++    I   S P+ G+G+AI NRL +AA  
Sbjct: 310 FDEAEVDMIISESFPDTGVGLAIMNRLMKAAGG 342


>gi|110633072|ref|YP_673280.1| translation factor SUA5 [Mesorhizobium sp. BNC1]
 gi|110284056|gb|ABG62115.1| translation factor SUA5 [Chelativorans sp. BNC1]
          Length = 318

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 152/314 (48%), Positives = 203/314 (64%), Gaps = 5/314 (1%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL  AC  L AG P+AIPTETVYGLA D+RN  A+ R++E K RP  NPLI H++D+ M 
Sbjct: 10  ALDAACRLLAAGEPVAIPTETVYGLAADARNGEAVARIFEAKGRPRFNPLIAHMADLEMA 69

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            + A   PL+L LA+ FWPGPLTLVL       IHPL TA L T   R P GF   +I  
Sbjct: 70  GRFAVFSPLALRLAQAFWPGPLTLVLPHRPDLGIHPLVTAGLDTLALRCPQGFAANVIAR 129

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PLA PSAN SG+++ T  + + ++++   I L++DGG +++GLESTIV V  ++ + 
Sbjct: 130 FGRPLAAPSANISGRVTGTTAEAV-NAALGDRIRLVVDGGPARVGLESTIVKV-ADETLI 187

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           +LRPGGL  E ++R   + L+   +     Q+PGML SHYAP + +RL A  V   EAL+
Sbjct: 188 LLRPGGLAAEEIERVAGMSLKRGANG---VQAPGMLASHYAPHAAIRLDASEVLAGEALL 244

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG    K  + A + LNLS +G L+EAA NLF+++   D  GA +IA   +P HGLG A
Sbjct: 245 GFGPDRAKGADQAAMVLNLSPSGDLREAAANLFSHLATLDAGGAKTIAVEPVPRHGLGEA 304

Query: 311 INNRLERAAAPRNQ 324
           IN+RL RAAAPR+Q
Sbjct: 305 INDRLARAAAPRDQ 318


>gi|289577391|ref|YP_003476018.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter italicus
           Ab9]
 gi|289527104|gb|ADD01456.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter italicus
           Ab9]
          Length = 354

 Score =  352 bits (905), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 98/338 (28%), Positives = 164/338 (48%), Gaps = 26/338 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A + +  G  +A PTETVYG+  +S +  A+++++ +K RP  NPLI H++++  
Sbjct: 15  ELIDFAAKVIREGGLVAFPTETVYGIGANSFDEEAVKKIFMVKGRPQDNPLIVHIAELEQ 74

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +       P     L + FWPGPLTL+     +  +  ++TA + T   R+P       L
Sbjct: 75  IYDLVEEIPQKAKILMEKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSDTIAHLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    P++ PSAN SG+ S T+  H++   +  ++ +IIDGG    G+EST++++  EK
Sbjct: 133 IKRAKVPISAPSANVSGKPSPTDASHVV-EDLDGKVDIIIDGGKCDFGVESTVLDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
              +LRPG + +E LK  I  VE++  +         P+SPGM   HY+P ++V +   H
Sbjct: 191 MPVVLRPGAVTLEMLKEVIGNVEVDPSLLKKPKGNLKPKSPGMKYKHYSPNAEVYIVKGH 250

Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           +      I+                  V           + +    + +  A NLF  ++
Sbjct: 251 LKKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYKKGEIIVVGDRNRPETIAKNLFAVLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             D  G   I   S   + +G+AI NRLE+AA  +  S
Sbjct: 311 QFDKKGVDVIFAESFEYNNIGLAIMNRLEKAAGYKEIS 348


>gi|297543678|ref|YP_003675980.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841453|gb|ADH59969.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 354

 Score =  352 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 97/338 (28%), Positives = 163/338 (48%), Gaps = 26/338 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A + +  G  +A PTETVYG+  +S +  A+++++ +K RP  NPLI H++++  
Sbjct: 15  ELIDLAAKVIREGGLVAFPTETVYGIGANSFDEEAVKKIFMVKGRPQDNPLIVHIAELEQ 74

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +       P     L + FWPGPLTL+     +  +  ++TA + T   R+P       L
Sbjct: 75  IYDLVEDIPQKAKILMEKFWPGPLTLIF--KKSQKVPYVNTAGMDTVAIRMPSDTIAHLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    P++ PSAN SG+ S T+  H++   +  ++ +IIDGG    G+EST++++  EK
Sbjct: 133 IKRAKVPISAPSANVSGKPSPTDASHVV-EDLDGKVDIIIDGGKCDFGVESTVLDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
              +LRPG + +E LK  I  VE++  +         P+SPGM   HY+P ++V +    
Sbjct: 191 MPVVLRPGAVTLEMLKEVIGNVEVDPSLLKKPKGNLKPKSPGMKYKHYSPNAEVYIVKGD 250

Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           +      I+                  V           + +    + +  A NLF  ++
Sbjct: 251 LEKVVKKIQELTEEQLKYGKKVGIMATVQTSTQYKKGEIIVVGDRKRPETIAKNLFAVLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             D  G   I   S   + +G+AI NRLE+AA  +  S
Sbjct: 311 QFDKKGVDVIFAESFEYNNIGLAIMNRLEKAAGYKEIS 348


>gi|254520295|ref|ZP_05132351.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. 7_2_43FAA]
 gi|226914044|gb|EEH99245.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. 7_2_43FAA]
          Length = 349

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 109/336 (32%), Positives = 168/336 (50%), Gaps = 29/336 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A + +  G  +A PTETVYGL  ++ N  A+ +++  K RP  NPLI HVS  
Sbjct: 14  DIEYLKEAADIIYNGGVVAFPTETVYGLGANALNDEAVEKIFNAKGRPQDNPLIVHVSSK 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           ++      V  ++  L   FWPGPLT++L+      I   ++ANL T   R+P      K
Sbjct: 74  NINNLVKDVPEIAQKLINRFWPGPLTIILNKKEI--IPNRTSANLDTIGIRMPNDKIALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE  G P+A PSAN SG+ S T V+  +   +   I  I+ G  S +G+ESTIV+   +
Sbjct: 132 LIELSGCPIAAPSANISGRPSPTEVERCV-EDLSGRIDYILGGERSNVGVESTIVDCTVD 190

Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
             + +LRPGG+ +E L+       I   ++   D+   P++PGM   HYAP++  +L+ I
Sbjct: 191 PPM-VLRPGGVTLEMLQEVCEDIKIDKAIQGKPDKNLKPKAPGMKYRHYAPKA--KLKII 247

Query: 242 HVNPREALIRFGNVPIKNIENA-----------------IISLNLSKTGKLKEAAFNLFN 284
             N ++ + +   +    IEN                     ++L     L + A NLF 
Sbjct: 248 KGNKQKTIEKINEIVQNYIENQKEVAILSTDELCSYFNKGKVISLGSEKNLYDVARNLFE 307

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  DD     I   +    G+G+AI NRL +AA 
Sbjct: 308 SLRECDDLNVDIILCQAFDEKGVGLAIMNRLNKAAG 343


>gi|212224235|ref|YP_002307471.1| Hypothetical translation factor [Thermococcus onnurineus NA1]
 gi|212009192|gb|ACJ16574.1| Hypothetical translation factor [Thermococcus onnurineus NA1]
          Length = 339

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 118/331 (35%), Positives = 173/331 (52%), Gaps = 23/331 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++ A +F+  G  +A PTETVYGL  D+ N  A RR++E K RPA NPLI H++D 
Sbjct: 12  DGRKIKIAAKFILEGKLVAFPTETVYGLGADALNEEAARRIFEAKGRPADNPLIVHIADF 71

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
             +KK A  +   +  LA+ FWPGPLT+VL      ++  ++T  L T   R+P      
Sbjct: 72  DDLKKLAREIPDEARLLAEKFWPGPLTVVLP--KKEEVPTVTTGGLDTVAVRMPAHPIAL 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     P+A PSAN SG+ S T  +H++     K I  IIDGG +KIG+EST+V++  E
Sbjct: 130 ALIRASTPIAAPSANISGKPSPTLAEHVIDDFYGK-IECIIDGGETKIGVESTVVDLSGE 188

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDET--STPQSPGMLKSHYAPRSQV------- 236
           K   +LRPGGL +E +++ I  VE+   V        +SPGM   HY+P +QV       
Sbjct: 189 KP-TLLRPGGLPLEEIEKVIGEVEIHPAVRGKLVDVARSPGMKYKHYSPNAQVIVVEGPR 247

Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                ++  +    R+  +R G +  +   +A    +L  +   +E A NLF  ++  D 
Sbjct: 248 ENVRKKIEELVKEYRKKGLRVGVMATEQY-DADEFFHLGTSE--EEVARNLFKALRELDK 304

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                I    I   GLG A+ NRL +AA  R
Sbjct: 305 RRVDIIIAEGIEERGLGFAVMNRLRKAAGYR 335


>gi|328555401|gb|AEB25893.1| ribosome maturation factor; RNA binding protein [Bacillus
           amyloliquefaciens TA208]
 gi|328913773|gb|AEB65369.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           amyloliquefaciens LL3]
          Length = 346

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 113/333 (33%), Positives = 173/333 (51%), Gaps = 19/333 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S TD   + +A E L     +A PTETVYGL  ++ N  A+ ++YE K RP+ NPLI H
Sbjct: 14  LSTTDP-QITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +SDI  + +  S V   +  L KLFWPG LTLVL       + P  TA L+T   R+P  
Sbjct: 73  ISDIGQLDRFISHVPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI + G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST++
Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV--- 236
           +   ++ V +LRPGG+  E ++ A    L  +   +E   P SPGM  +HYAP + +   
Sbjct: 191 SCAGKQPV-LLRPGGVTKEQIESAAGPVLVDKGLTEEDEVPISPGMKYTHYAPSAPLAVA 249

Query: 237 -----RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                R++ +    +    R G +  +       A       +   L+  A  L++ ++ 
Sbjct: 250 DGGARRIQELADEYKRRGKRIGILTTEENADSYQADFIKVCGRRADLETVASALYDALRS 309

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            D++    I   S P+ G+G+A+ NRL +AA  
Sbjct: 310 FDEAEVDMIISESFPDTGVGLAVMNRLMKAAGG 342


>gi|308175423|ref|YP_003922128.1| ribosome maturation factor [Bacillus amyloliquefaciens DSM 7]
 gi|307608287|emb|CBI44658.1| putative ribosome maturation factor; RNA binding protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 346

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 112/333 (33%), Positives = 173/333 (51%), Gaps = 19/333 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S TD   + +A E L     +A PTETVYGL  ++ N  A+ ++YE K RP+ NPLI H
Sbjct: 14  LSTTDP-QITQAAELLRQNEVVAFPTETVYGLGANAENTEAVTKIYEAKGRPSDNPLIVH 72

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +SDI  + +  S +   +  L KLFWPG LTLVL       + P  TA L+T   R+P  
Sbjct: 73  ISDIGQLDRFISHIPETAKKLMKLFWPGALTLVLPCKPGV-LSPRVTAGLETVAVRMPDH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI + G P+A PSAN SG+ S T  +H+ +  +   I  I+DGG + IG+EST++
Sbjct: 132 PVALALISSAGLPIAAPSANLSGKPSPTKAEHV-AHDLNGRIAGIVDGGATGIGVESTVL 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV--- 236
           +   ++ V +LRPGG+  E ++ A    L  +   +E   P SPGM  +HYAP + +   
Sbjct: 191 SCAGKQPV-LLRPGGVTKEQIESAAGPVLVDKGLTEEDEVPISPGMKYTHYAPSAPLAVA 249

Query: 237 -----RLRAIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                R++ +    +    R G +  +       A       +   L+  A  L++ ++ 
Sbjct: 250 DGGARRIQELADEYKSRGKRIGILTTEENAESYQADFIKVCGRRADLETVASALYDALRS 309

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            D++    I   S P+ G+G+A+ NRL +AA  
Sbjct: 310 FDEAEVDMIISESFPDTGVGLAVMNRLMKAAGG 342


>gi|332158705|ref|YP_004423984.1| sua5 superfamily-related protein [Pyrococcus sp. NA2]
 gi|331034168|gb|AEC51980.1| sua5 superfamily-related protein [Pyrococcus sp. NA2]
          Length = 340

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 28/343 (8%)

Query: 1   MQIM----SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M I+       D   LR A   +  G  +A PTETVYGL  D+ N +A+RR++E K RPA
Sbjct: 1   MTIIINMRDGIDERKLRIAARLIREGKLVAFPTETVYGLGADALNESAVRRIFEAKGRPA 60

Query: 57  MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
            NPLI H+S  S V + A  V   +  LA+ FWPGPL +VL    +  +  ++T  L T 
Sbjct: 61  DNPLIVHISSFSQVHELAREVPEEAKMLAREFWPGPLAIVLP--KSEIVPKVTTGGLDTV 118

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      KLIE  G P+A PSAN SG+ S T+ +H+ +     +I  I+DGG +KI
Sbjct: 119 AIRMPANKIALKLIELSGRPIAAPSANISGKPSPTSAEHV-AEDFYGKIECIVDGGETKI 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYA 231
           G+EST++++     V +LRPGGL +E ++R I  V +   V   +    ++PGM   HYA
Sbjct: 178 GVESTVIDLTEWPPV-LLRPGGLPLEEIERVIGEVRVHPAVYGKKVDVAKAPGMKYRHYA 236

Query: 232 PRSQV------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279
           P ++V            ++R +    +   ++ G +   +   A     L +   ++E A
Sbjct: 237 PNAEVIVVEGSREKVGAKIRELVEEFKSKGLKVGVIGSADY-GADEFFFLGR--SVEEVA 293

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            NLF  ++  D +G   +    +   GLG+A+ NRL +A+  R
Sbjct: 294 RNLFKALRYMDRAGVDIVIAEGVEEKGLGLAVMNRLRKASGYR 336


>gi|163867863|ref|YP_001609067.1| hypothetical protein Btr_0635 [Bartonella tribocorum CIP 105476]
 gi|161017514|emb|CAK01072.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 320

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 143/322 (44%), Positives = 208/322 (64%), Gaps = 3/322 (0%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
            +   +S ++++A   L+ G  +A+PTETVYGLA D+ N  A+  ++  KKRP  NPLI 
Sbjct: 2   TIRPLNSVSIKEAITLLEQGRLVALPTETVYGLAGDATNGRALSSIFSTKKRPQFNPLIA 61

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           HV+ I M +++  +D LS  L ++FWPGPLTLVL L    +IHPL+TA L T   R P  
Sbjct: 62  HVNGIEMAERYVEIDFLSRRLMEVFWPGPLTLVLPLKKQHNIHPLTTAGLDTLAIRFPDS 121

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              ++++  G PLA PSAN+SG++S T+ + + +S + + +PLI+DGG +KIGLESTI+ 
Sbjct: 122 RFAEIVQCLGRPLAAPSANQSGRLSPTSAEAVFTS-LGESVPLILDGGPAKIGLESTIIK 180

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           + C +++ +LRPGGL  + ++  +   L+  +D+ +  ++PGMLK+HYAP + +RL    
Sbjct: 181 I-CGERIYLLRPGGLAADKIEEVVGRSLKR-IDQRAAIEAPGMLKTHYAPNAAIRLNVEK 238

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
           V   EAL+ FG   +   ENA   LNLS+ G L+EAA +LF YMK  D      IA   I
Sbjct: 239 VENGEALLAFGPKRVMGAENAAFILNLSEGGTLEEAASHLFQYMKELDSFKVRCIAVEPI 298

Query: 303 PNHGLGIAINNRLERAAAPRNQ 324
           P+ GLG AIN+RL RAAAPR +
Sbjct: 299 PSWGLGEAINDRLIRAAAPREK 320


>gi|291548626|emb|CBL24888.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus torques L2-14]
          Length = 508

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 104/336 (30%), Positives = 161/336 (47%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + + +A   L  G  +A PTETVYGL  D+    A ++ Y  K RP+ NPLI H++D
Sbjct: 13  INQDVIEEAGNVLKQGGLVAFPTETVYGLGADALKEEAAKKTYAAKGRPSDNPLIVHIAD 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
              +KK A ++ P +  LA  FWPGPLT++ +   +  +   +T  L T   R+P     
Sbjct: 73  YEDLKKVAVNIPPETDALAAHFWPGPLTMIFE--KSESVPYGTTGGLDTVAVRMPSDPIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI   G  ++ PSAN SG+ S T  +H+    +  +I +I+DGG   IGLESTI+++ 
Sbjct: 131 AALIRAAGGFVSAPSANTSGRPSPTTAEHV-RVDLEGKIDMILDGGAVDIGLESTILDMT 189

Query: 185 CEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
            E  + ILRPG +  +  +  I      E     +    P++PGM   HYAP++++ +  
Sbjct: 190 VEPPM-ILRPGAITADMFEEVIGPVGVDETLVNSESKQAPKAPGMKYRHYAPKAKMMIVE 248

Query: 241 IHVNPREALIR------------FGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNY 285
            ++      IR             G +         N  I  N+         A NL+  
Sbjct: 249 GNIREEILAIRQLAYAAHREGKEVGIIATGETVQFYNYGIVKNIGTRENENTIARNLYRV 308

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D+     I   S   +G+G AI NRLE+AA  
Sbjct: 309 LREFDEEDVDLIYSESFAMNGIGKAIMNRLEKAAGH 344


>gi|218682976|ref|ZP_03530577.1| probable translation factor protein [Rhizobium etli CIAT 894]
          Length = 334

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 164/303 (54%), Positives = 205/303 (67%), Gaps = 2/303 (0%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  IAIPTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M ++HA  DP+S
Sbjct: 34  DGFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVS 93

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             LA  FWPGPLTLVL L   + IH L+TA L +   RVP GF   LI  +G PLA PSA
Sbjct: 94  RALAAAFWPGPLTLVLPLKPESPIHSLATAGLDSVGIRVPKGFAGALIGAFGRPLAAPSA 153

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG IS T+  H+  + +  ++PLI+D G S +G+ESTIV V+ + ++R+LRPGGL   
Sbjct: 154 NTSGAISATSAAHV-EADLGAKVPLILDAGPSAVGVESTIVKVEGD-RLRLLRPGGLAAR 211

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
            ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG+  +   
Sbjct: 212 EIERVAGRPLLRAKTASAAIEAPGMLASHYAPGAAVRLNARTVEPGEALIGFGSAAVSGA 271

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           E A I L+LS  G L EAA NLF+YMK AD SGASSIAFS IP  GLG AIN+RL+RAAA
Sbjct: 272 EAARIVLDLSPRGDLAEAAANLFDYMKRADASGASSIAFSPIPEEGLGEAINDRLQRAAA 331

Query: 321 PRN 323
           PR+
Sbjct: 332 PRD 334


>gi|260460343|ref|ZP_05808595.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033988|gb|EEW35247.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 324

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 155/317 (48%), Positives = 198/317 (62%), Gaps = 4/317 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL +A   L  G  +AIPTETVYGLA D+ N   + R++E K RP  NPLI HV+D++M
Sbjct: 9   EALERALALLQGGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVADMAM 68

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            ++ A  DPLS  LA  FWPGPLTLVL       IHPL TA L T   R+P GF   LI 
Sbjct: 69  AERIALFDPLSKKLAIAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGGDLIA 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN SG+IS T  + + ++ +   I L++DGG + +GLESTIV  +   ++
Sbjct: 129 RLGRPLAAPSANSSGKISATTAQAV-AADLGARIRLVVDGGATPVGLESTIVKAE-AGRL 186

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           R+LRPGG+  E ++ A+ +EL       +  ++PGML SHYAP + VRL A  V   EAL
Sbjct: 187 RLLRPGGIAAEDIEAAVGMEL--LRGGGAGVEAPGMLASHYAPGAAVRLNAGTVGDGEAL 244

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FGN      + A    NLS TG L+EAA NLF YM+  D SGA +IA   IP  GLG 
Sbjct: 245 LAFGNRRAAGWQRAAAFRNLSDTGDLREAATNLFAYMQDLDRSGARTIAVEPIPFDGLGE 304

Query: 310 AINNRLERAAAPRNQSQ 326
           AIN+RL RAAAPR+ +Q
Sbjct: 305 AINDRLSRAAAPRDNTQ 321


>gi|254452824|ref|ZP_05066261.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Octadecabacter
           antarcticus 238]
 gi|198267230|gb|EDY91500.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain [Octadecabacter
           antarcticus 238]
          Length = 315

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 147/318 (46%), Positives = 181/318 (56%), Gaps = 13/318 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            TD   L  A   L  G  +A PTETVYGL VD+RN  A+ RLY+ K RP+ NPLI HV 
Sbjct: 10  ATDQAELDAAARVLAGGGLVAFPTETVYGLGVDARNSDAVARLYQAKGRPSFNPLIVHVG 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            I   K+    D  +L LA+ FWPG LTLVL L   + I PL TA L+T   RVP     
Sbjct: 70  SIEAAKQFVEFDHTALVLAQAFWPGALTLVLPLRRDSAISPLVTAGLETLAIRVPDHSVA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L+  +G P+A PSAN SGQ+S T   H+    +   I  I+DGG   +GLESTIV   
Sbjct: 130 NGLLAAFGGPVAAPSANPSGQVSPTKFAHV-RDLMTGRIDGIVDGGDCGVGLESTIV--A 186

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            +    +LR GGL +E ++ A+  +L    D TS P SPG L SHYAP   VRL A  V 
Sbjct: 187 TKPTPTLLRAGGLPVEAIEAALGYDLALAGD-TSAPSSPGQLASHYAPAGTVRLNAQTVE 245

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             E L+ FG V          +LNLS +G L  AA  LF+ +   +  GA+ IA S IP+
Sbjct: 246 AGETLLGFGPV--------DAALNLSPSGDLIHAAARLFDALHQLNAMGAARIAVSPIPD 297

Query: 305 HGLGIAINNRLERAAAPR 322
           HGLG AIN+RL RAAAPR
Sbjct: 298 HGLGRAINDRLRRAAAPR 315


>gi|304317927|ref|YP_003853072.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779429|gb|ADL69988.1| Sua5/YciO/YrdC/YwlC family protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 349

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 106/339 (31%), Positives = 177/339 (52%), Gaps = 26/339 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   L +G  +A PTETVYG+  +S NP A+ +++  K RP  NPLI H+++ 
Sbjct: 13  DIGLIDEAANILISGGLVAFPTETVYGIGANSLNPDAVAKIFIAKGRPQDNPLILHIAEF 72

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + K+A  V   +L + +LFWPGPLT++ +   +  + P++TA + T   R+P      
Sbjct: 73  QDLFKYAKNVPDNALKMMELFWPGPLTMIFE--KSDIVPPINTAGMDTVAIRMPSNTIAH 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G P++ PSAN SG+ S T+  H+++  +   + +IIDGG   +G+EST+V++  
Sbjct: 131 TLIKRAGIPVSAPSANLSGKPSPTDASHVIND-LYGSVDMIIDGGSCDVGVESTVVDMTG 189

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRLRA 240
           E  + ILRPGG+  E +  AI  VE++  V +       P++PGM   HY+P ++V +  
Sbjct: 190 EIPI-ILRPGGITKEMIMNAIGSVEVDPIVYKKPAKDLRPKAPGMKYKHYSPDAEVFIVK 248

Query: 241 IHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNY 285
            ++      I            + G +  +         + L +    + +  A NLFN 
Sbjct: 249 GNLGDVIKKIQELTEFQLNNGKKVGIMATEQTCEKYRNGVVLVVGDRERPETIAKNLFNC 308

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           ++  D  G   +        G+G+AI NRLE+AA  +  
Sbjct: 309 LREFDKKGVDIVYAEGFDYSGIGLAIMNRLEKAAGYKEI 347


>gi|205375324|ref|ZP_03228114.1| SUA5 protein [Bacillus coahuilensis m4-4]
          Length = 339

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 103/326 (31%), Positives = 164/326 (50%), Gaps = 18/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +R+A E L     +A PTETVYGL  ++ +  A+R++YE K RP+ NPLI H+ D   +
Sbjct: 14  QIRQAAELLQRNEVVAFPTETVYGLGANATSSEAVRKIYEAKGRPSDNPLIVHIDDKRQL 73

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
               A +   +  L   FWPGPLT++           + TA L T   RVP     + ++
Sbjct: 74  GDLVAEIPASAYLLMDEFWPGPLTIIFAKKPGV-FSDIVTAGLDTVAIRVPDHPVARAIL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                P+A PSANRSG+ S T   H+ ++ +   I  I+DGG + +G+EST+++      
Sbjct: 133 HETNLPIAAPSANRSGRPSPTTAHHV-ATDLTGRIAGIVDGGPTGVGVESTVIDCTVTPP 191

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           + ILRPGG+  E ++  I  V ++  + E    P+SPGM  +HYAP + V L   +V   
Sbjct: 192 M-ILRPGGVTAEQIREVIGDVSIDPSLKEGEGAPKSPGMKYTHYAPEAPVYLVEGNVQRL 250

Query: 247 EALI--------RFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           + LI        + G +  +   +   A + +       L   A +L+  ++  +++   
Sbjct: 251 QQLIDRKQAEGMKVGVMSTREAASDLKADVVVTCGSRENLSTVARDLYEALRHFNETDVD 310

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   +    G+G AI NRLE+AA  
Sbjct: 311 IILSETFSKEGIGSAIMNRLEKAAGY 336


>gi|301299954|ref|ZP_07206181.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852436|gb|EFK80093.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 336

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 116/338 (34%), Positives = 173/338 (51%), Gaps = 24/338 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I  I   +   +A + L  G  +A PTETVYGL  D+ N  A++R+Y  K RP+ NPL
Sbjct: 1   MLITKIYKPSEFNEAAKELSLGELVAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VS + MVK+   S+      + + FWPG LT+VL +   + +    T  LKTA FR+
Sbjct: 61  IVTVSSLEMVKRFVPSLSKDVEKIIEKFWPGSLTIVLKIKDGS-LSKTVTGGLKTAAFRM 119

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN SG+ S T  +H+    +   I  I+D G + +G+ES
Sbjct: 120 PKNETTLNLITALGNPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTDVGVES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E    ILRPG +  E +++ I  E+   ++ V E   P++PGM   HYAP +Q
Sbjct: 179 TIIDMSTEIP-TILRPGAVTAEEIEKVIGKEVYSDKHKVKENEIPKAPGMKYKHYAPSAQ 237

Query: 236 VRLR-----------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
           V +            A     +  ++    V  K +EN   SL       ++ AA NLF 
Sbjct: 238 VLIVNKDNWNSALQWANENKNQVGILADDEVLSKALENKTYSLG----ENVESAAKNLFA 293

Query: 285 YMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  DD      I   + P  G+G+A  NRL+++A  
Sbjct: 294 GLRYFDDDNQIKYILAEAFPEEGVGLAYMNRLKKSAGN 331


>gi|302390585|ref|YP_003826406.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646]
 gi|302201213|gb|ADL08783.1| translation factor SUA5 [Thermosediminibacter oceani DSM 16646]
          Length = 343

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 103/332 (31%), Positives = 162/332 (48%), Gaps = 22/332 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  ++  A   +  G  +A PTETVYGL  ++ +  A  ++Y+ KKRP  NPLI H+   
Sbjct: 10  EPESINLAARVIKNGGLVAFPTETVYGLGANALDEKAAFKIYQAKKRPQDNPLIVHIHSP 69

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             + K AS  P +   L + FWPGPLT+VL+   +  +   +T  L T   R+P      
Sbjct: 70  GELDKLASNVPRTARILMEKFWPGPLTIVLE--KSGAVPYGTTGGLDTVAVRMPRHPVAL 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T    +    +   + +I+DGG  ++G+EST++++  
Sbjct: 128 ALIRESGVPIAAPSANISGRPSPTTAGDVY-EDLAGRVDIILDGGPCEVGVESTVLDLTG 186

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
           E  V ILRPGG+  E L+  +  VEL+  + E   P+SPG    HY+P+++V +    + 
Sbjct: 187 EVPV-ILRPGGVTREELEAVLGRVELDPGLAEGQKPKSPGQKYKHYSPKARVLVVEGPIE 245

Query: 245 PREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
            +   I                   V  +        L++         + NLF+ ++  
Sbjct: 246 AQVRKITELAKKLTAEGKKVGIMATVQTRGYYETGCVLSVGDREAPLTISSNLFSVLRKF 305

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           D  G   +    IP  GLG+A+ NRL +AA  
Sbjct: 306 DKLGVEEVLAEGIPETGLGLAVMNRLRKAAGY 337


>gi|326792742|ref|YP_004310563.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM
           5427]
 gi|326543506|gb|ADZ85365.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium lentocellum DSM
           5427]
          Length = 344

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 109/343 (31%), Positives = 174/343 (50%), Gaps = 26/343 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   ITD+ AL +A   L  G  +A PTETVYGL  ++ N  A++ +Y+ K RP+ NPL
Sbjct: 1   MKTSIITDTTALLEAANILQQGGLVASPTETVYGLCANALNENAVKNIYKAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++D+ M+      V P++  L + FWPGPLTL+    +++ +  + T  L T   R 
Sbjct: 61  IVHIADLEMLSPLVEEVPPMARTLMEHFWPGPLTLIF--KASSLVPKVVTGGLDTVAIRF 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++LI+  G PLA PSAN SG+ S TN   ++   +  +I  II G  SK G+ES
Sbjct: 119 PSHPIIQQLIKASGLPLAAPSANTSGKPSPTNASRVI-EDLEGKIDAIIVGDSSKYGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPR 233
           T+V+    +   ILRPGG+  E ++  +        + + + E   P++PGM   HY+P 
Sbjct: 178 TVVD-TTGEVATILRPGGITAEMIEAVLGSVTIDPAISHALKEGELPKAPGMKYIHYSPN 236

Query: 234 SQVRLRAIH------------VNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEA 278
           ++V +                V+      + G +     +    A + ++   T  L   
Sbjct: 237 AEVIIVDGEESLVISKMNELIVSAHSQGKKVGVLATDETKEHFKADLVISAGTTKNLTTI 296

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           A +LF  ++  DD+    +   + P  G+G AI NRLE++A  
Sbjct: 297 AAHLFEALRTFDDADIDIVYSLAFPKKGIGNAIMNRLEKSAGY 339


>gi|302875885|ref|YP_003844518.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B]
 gi|307689318|ref|ZP_07631764.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B]
 gi|302578742|gb|ADL52754.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulovorans 743B]
          Length = 350

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 104/337 (30%), Positives = 162/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + LR+  E +  G  +A PTETVYGL  ++ +  A+ +++  K RP  NPLI H+S 
Sbjct: 13  IEKDKLREVAEVIRNGGLVAFPTETVYGLGANAFDENAVEKIFIAKGRPQDNPLIVHISQ 72

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           +  +       P S   L   FWPGP+T +L+    T I   ++A L+T   R+P     
Sbjct: 73  LDDIFPLVKEIPSSAKMLMDNFWPGPITFILN--KETCIPYKTSAGLETIGIRMPSDPLA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI+  G P+A PSAN SG+ S T++   +   +  ++  II G  S++GLESTIV+  
Sbjct: 131 RALIKEVGVPIAAPSANLSGKPSPTDINRCI-EDLEGKVDCIIGGSNSEVGLESTIVDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQV--- 236
            E    +LRPG + IE +++      I   L    D+   P++PGM   HYAP++ V   
Sbjct: 190 VE-PPCVLRPGAITIEMIRKIQPEAYIDPALLNKADQNFKPKAPGMKYKHYAPKASVIII 248

Query: 237 ---------RLRAIHVNPREALIRFGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFN 284
                    ++  I  N  +  I+ G +     +        ++L     L     NLF 
Sbjct: 249 KGEINKTVEKINEIVQNYIDDGIKVGIMATDETKTYYKKGEVISLGSRSDLTSIGRNLFG 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  DD G   I   +      G+AI NRL +AA  
Sbjct: 309 VLRTFDDLGVEYIISEAFEEKEYGLAIMNRLNKAAGY 345


>gi|83312811|ref|YP_423075.1| putative translation factor [Magnetospirillum magneticum AMB-1]
 gi|82947652|dbj|BAE52516.1| Putative translation factor [Magnetospirillum magneticum AMB-1]
          Length = 368

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 123/311 (39%), Positives = 179/311 (57%), Gaps = 10/311 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             L  G  +A PTETVYGL  D+ +  A+  +++ K RP+ NPLI HVS +        +
Sbjct: 67  RVLAEGGLVAFPTETVYGLGGDATSDAAVAAIFKAKGRPSFNPLIAHVSSLEQAAALVEL 126

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
              +  LA+ FWPGPLTLVL   + + +  L++A L +   R+P       LI+  G PL
Sbjct: 127 GADAHLLAERFWPGPLTLVLRRRADSPVSLLASAGLDSVAVRMPDHPVALALIKAAGRPL 186

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG++S T  +H+ +  +   I +++DGG  ++G+EST++++  E+   +LRPG
Sbjct: 187 AAPSANRSGRVSPTRAEHV-AQCLEGRIAMVLDGGPCRVGVESTVLDL-SEEPPTLLRPG 244

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  + L+ A+   +   ++    P+SPG L+SHYAP   VRL A    P EAL+ FG  
Sbjct: 245 GITADELEAALGRPIRRALETPDAPRSPGQLESHYAPALPVRLNATGAEPGEALLGFGPA 304

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
           P          LNLS  G L EAA +LF  ++  D      IA   IP  GLG+AIN+RL
Sbjct: 305 P-------DCVLNLSPKGDLSEAAAHLFAMLRALDRPDYRGIAVMPIPGRGLGLAINDRL 357

Query: 316 ERAAAPRNQSQ 326
           +RAAAPR+  +
Sbjct: 358 KRAAAPRDTQK 368


>gi|325264267|ref|ZP_08130998.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. D5]
 gi|324030338|gb|EGB91622.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. D5]
          Length = 511

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 102/336 (30%), Positives = 163/336 (48%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   + +A E L  G  +A PTETVYGL  ++ +  A ++ Y  K RP+ NPLI H++D
Sbjct: 16  IDKEVILEAGEVLKNGGLVAFPTETVYGLGANALDEEAAKKTYAAKGRPSDNPLIVHIAD 75

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  + +    V P +  LA  FWPGPLT++ +   +  +   +T  L T   R+P     
Sbjct: 76  LQALDEITENVPPETEELAFHFWPGPLTMIFE--KSDIVPLGTTGGLGTVAVRMPSDLIA 133

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++LI   G  ++ PSAN SG+ S T  +H+ +  +  +I +I+DGG   IGLESTI+++ 
Sbjct: 134 RELILAAGGYVSAPSANTSGRPSPTTAQHV-AEDLDGKIDMILDGGSVDIGLESTILDMT 192

Query: 185 CEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVR--- 237
               + ILRPG +  + L+  I      E     + T  P++PGM   HYAP++++    
Sbjct: 193 VTPPM-ILRPGAITADMLEEVIGTVSVDETILGSESTQAPKAPGMKYRHYAPKARLMIVE 251

Query: 238 ---------LRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNY 285
                    +R +         + G +            +  N+      K  A NL+  
Sbjct: 252 GTLREEVFAIRQLAYEAHRQGRKAGIIATNETMPFYTYGLIKNIGSRDNEKTIARNLYAV 311

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D+   + I   S    G+G AI NRLE+AA  
Sbjct: 312 LREFDEEDVAEIFSESFAAQGIGKAIMNRLEKAAGH 347


>gi|241203341|ref|YP_002974437.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857231|gb|ACS54898.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 324

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 161/303 (53%), Positives = 202/303 (66%), Gaps = 2/303 (0%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  IAIPTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M ++HA  DP+S
Sbjct: 24  DGFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVS 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             LA+ FWPGPLTLVL L   + IH L+ A L +   RVP GF   LI  +G PLA PSA
Sbjct: 84  RALARAFWPGPLTLVLPLKPQSSIHSLAIAGLDSVGIRVPKGFAGALIGAFGRPLAAPSA 143

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG +S T+  H+  + +   IPLI+D G S +G+ESTIV  +   ++R+LRPGGL   
Sbjct: 144 NTSGGVSATSAAHV-EADLGARIPLILDAGPSAVGVESTIVKAEG-GRLRLLRPGGLAAR 201

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
            ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG+  +   
Sbjct: 202 EIERVAGQPLLRARTASAAIEAPGMLASHYAPGASVRLNATAVEPGEALIAFGSAAVSGA 261

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           E+A I L+LS  G L EAA NLF+YMK AD SGA SIAFS IP  GLG AIN+RL+RAAA
Sbjct: 262 ESARIVLDLSPRGDLAEAAANLFDYMKRADASGAQSIAFSPIPEEGLGEAINDRLQRAAA 321

Query: 321 PRN 323
           PR+
Sbjct: 322 PRD 324


>gi|149183887|ref|ZP_01862278.1| SUA5 protein [Bacillus sp. SG-1]
 gi|148848406|gb|EDL62665.1| SUA5 protein [Bacillus sp. SG-1]
          Length = 348

 Score =  350 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 99/326 (30%), Positives = 163/326 (50%), Gaps = 18/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A +FL     +A PTETVYGL  ++++  A+ +++  K RP+ NPLI H+S+   +
Sbjct: 20  QIVEASQFLKDNEVVAFPTETVYGLGANAKSDEAVDKIFAAKGRPSDNPLIVHISNSEQL 79

Query: 71  KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            +     P +   + + FWPGPLT++        +    TA L +   R+P       LI
Sbjct: 80  NELVEEIPEAAQIMMEHFWPGPLTIIFKKKEGV-LSEKVTAGLDSVGIRMPDHPVALALI 138

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSAN SG+ S T   H+ +  +   I  +I+GG + +G+EST+V+   E  
Sbjct: 139 EAANLPIAAPSANVSGRPSPTTAHHV-TQDLDGRISGVINGGETGVGVESTVVDCTSEIP 197

Query: 189 VRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV--------RL 238
           V ILRPGG+  E L+ A    L           P+SPGM  +HYAP + +         +
Sbjct: 198 V-ILRPGGVTKEQLEEAAGPVLVDPSLAKGEGAPKSPGMKYTHYAPDAPLILLDGKREWI 256

Query: 239 RAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           +++    R+A ++ G +  +       A   L       L   A +L++ ++  ++S   
Sbjct: 257 QSLVEEKRQAGMKVGILTTEENARFYQADKILVSGSRLDLSTVAHSLYDVLRSFNESDVD 316

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   + P  G+G+AI NRL++AA  
Sbjct: 317 IIFSETFPQEGVGMAIMNRLQKAAGY 342


>gi|209548153|ref|YP_002280070.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533909|gb|ACI53844.1| Sua5/YciO/YrdC/YwlC family protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 324

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 164/303 (54%), Positives = 204/303 (67%), Gaps = 2/303 (0%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  IAIPTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M ++HA  DP+S
Sbjct: 24  DGFAIAIPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEEHAEFDPVS 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             LA  FWPGPLTLVL L   + IH L+TA L +   RVP GF   LI  +G PLA PSA
Sbjct: 84  RALAAAFWPGPLTLVLPLKPQSPIHSLATAGLDSVGVRVPKGFAGALIGAFGRPLAAPSA 143

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG IS T+  H+  + +  ++PLI+D G S +G+ESTIV V+ + +VR+LRPGGL   
Sbjct: 144 NTSGAISATSAAHV-EADLGAKVPLILDAGPSTVGVESTIVKVEGD-RVRLLRPGGLAAR 201

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
            ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG   +   
Sbjct: 202 EIERVAGRPLLRAKTASAAIEAPGMLASHYAPGAAVRLNATAVEPGEALIAFGGAAVSGT 261

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             A I L+LS  G L EAA NLF+YMK AD SGASSIAFS+IP  GLG AIN+RL+RAAA
Sbjct: 262 NGARIVLDLSPRGDLAEAAANLFDYMKRADASGASSIAFSAIPEEGLGEAINDRLQRAAA 321

Query: 321 PRN 323
           PR+
Sbjct: 322 PRD 324


>gi|182420265|ref|ZP_02951494.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum 5521]
 gi|237666937|ref|ZP_04526922.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182375860|gb|EDT73452.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum 5521]
 gi|237658136|gb|EEP55691.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 349

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 106/341 (31%), Positives = 167/341 (48%), Gaps = 29/341 (8%)

Query: 4   MSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +   D     + +A + +  G  +A PTETVYGL  D+ N  A+++++  K RP  NPLI
Sbjct: 8   IKNIDEEEYKIEEAAKIIKEGGIVAFPTETVYGLGADALNEDAVKKIFVAKGRPQDNPLI 67

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV+    ++ +   +  ++  L   FWPGPLT++L       I  +++A+L +   R+P
Sbjct: 68  IHVAS-KNIEHYVDEIPEIAKELMDKFWPGPLTIIL--KKNDIIPNITSASLDSIGVRMP 124

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                +KLIE  G  +A PSAN SG+ S T+++  +   +   +  II G  SKIG+EST
Sbjct: 125 DNEIARKLIELSGTTIAAPSANISGRPSPTDIERCV-EDLDGRVDYIIGGCHSKIGVEST 183

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRS 234
           IV+   +  + +LRPGG+ +E LK       I   +     E   P++PGM   HYAP++
Sbjct: 184 IVDCTVDPPL-VLRPGGITLEMLKEIDSRIEIDKAIMQKPSENLKPKAPGMKYRHYAPKA 242

Query: 235 QVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAA 279
           +V + + +     A I+                     +      I + L     L   A
Sbjct: 243 KVTIISGNRKKTVAKIKEMVNYNIEKQKKVCILTVEENEKEYQQGIKITLGSLSDLTTVA 302

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  ++  DD GA  I   +    G+G+AI NRL +AA 
Sbjct: 303 KNLFEALRKCDDLGADLILAEAYEEKGVGVAIMNRLNKAAG 343


>gi|311032025|ref|ZP_07710115.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13]
 gi|311033339|ref|ZP_07711429.1| sua5/yciO/yrdC/ywlC family protein [Bacillus sp. m3-13]
          Length = 350

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 109/331 (32%), Positives = 168/331 (50%), Gaps = 23/331 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   L     +A PTETVYGL  ++ +  A+ +++E K RP+ NPLI H+S +  +
Sbjct: 20  QIMEAAGLLKENEVVAFPTETVYGLGANALSDQAVLKIFEAKGRPSDNPLIVHISKLEQL 79

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            +    V   +  L + FWPGPLTLVL       +    TA L+T   R+P     + LI
Sbjct: 80  AELVDNVPESAHKLMEAFWPGPLTLVLT--KKEGVSQYVTAGLETLAVRMPDHSVARALI 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G PLA PSAN SG+ S T  KH+    +   I  I+DGG + +GLEST+V+   E  
Sbjct: 138 EISGLPLAAPSANLSGKPSPTTAKHV-EEDLIHRIAGIVDGGATGVGLESTVVDCTAETP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI--- 241
           + ILRPGG+  E L++ +  V+++  +   +E   P+SPGM  +HYAP + V L      
Sbjct: 197 M-ILRPGGVTKEELEKVVGKVDVDPALFSQEELHKPKSPGMKYTHYAPIAPVYLVEGSAS 255

Query: 242 --HVNPREALIRFGNVPIKNIENAII--------SLNLSKTGKLKEAAFNLFNYMKIADD 291
                 + A ++   V +   E  I         +++      L   A  L++ ++  + 
Sbjct: 256 FMEQTIKGAQLKGHKVGLLATEETIAQIQATEITAISCGTKNDLATVASQLYDGLRAFNA 315

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +    I   + P  G+G AI NRLE+AA  +
Sbjct: 316 TDVDVIFSETFPRTGVGAAIMNRLEKAAGHK 346


>gi|187777267|ref|ZP_02993740.1| hypothetical protein CLOSPO_00819 [Clostridium sporogenes ATCC
           15579]
 gi|187774195|gb|EDU37997.1| hypothetical protein CLOSPO_00819 [Clostridium sporogenes ATCC
           15579]
          Length = 355

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + KA   L  G  +  PTETVYGL  ++ +  A+++++E K RP  NPLI H+S 
Sbjct: 17  IDEHIISKAGNILRQGGLVVFPTETVYGLGANALDKDAVKKIFEAKGRPQDNPLIVHISK 76

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  ++K    + P++  L   FWPGP+T++L       I   ++A L +   R+P     
Sbjct: 77  VKDIEKLVEKIPPIAQKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T+++  +   +   +  I+ G  S++G+EST+++  
Sbjct: 135 MELISMAGVPIAAPSANLSGKPSPTDLETCV-EDLDGRVNAILGGDNSEVGVESTVIDCT 193

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
            +    ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 194 ID-PPCILRPGGITLEMLKEVDSNIYIDPAIMKKPDKELRPKAPGMKYRHYAPKAPLKII 252

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 253 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGEVVSIGSRKDLNTIAHNLFY 312

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 313 VLRTFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 349


>gi|227821062|ref|YP_002825032.1| Sua5 family protein [Sinorhizobium fredii NGR234]
 gi|227340061|gb|ACP24279.1| Sua5 family protein [Sinorhizobium fredii NGR234]
          Length = 324

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 160/318 (50%), Positives = 213/318 (66%), Gaps = 2/318 (0%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I    A+ KAC  L  G P+AIPTETVYGLA D+ N  AI R+YE+K RP  NPLICHV
Sbjct: 8   RIEPDRAIEKACAALSEGEPVAIPTETVYGLAADATNADAISRIYEMKGRPRFNPLICHV 67

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           SD++M + H   DPLS  LA+ FWPGPLTL+L     + +H L++A L+T   R+P GF+
Sbjct: 68  SDMAMAEAHVVFDPLSRRLAEAFWPGPLTLILPERRESTVHALASAGLETLGIRMPEGFS 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++I  +G PLA PSAN SG+IS T+  H+  + +  ++ LI+D G ++IGLESTI+ V+
Sbjct: 128 RRVISHFGRPLAAPSANTSGKISPTSAAHV-EADLGAKLGLILDAGPAEIGLESTIIKVE 186

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
              ++R+LRPGGL+   ++    + +       +T ++PGML SHYAP + VRL A  V 
Sbjct: 187 -AGRLRLLRPGGLDAAEIEALTGLTVGRPEAAGATIEAPGMLASHYAPGAAVRLNAKDVR 245

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             EALIRFG   +     A I L+LS +G L+EAA NLF+YMK AD SG SSIAF  +P+
Sbjct: 246 KGEALIRFGGKALPGESAAAIVLDLSPSGNLREAAANLFDYMKRADASGVSSIAFGPVPS 305

Query: 305 HGLGIAINNRLERAAAPR 322
            GLG AI +RLERAAAPR
Sbjct: 306 EGLGEAIVDRLERAAAPR 323


>gi|85703463|ref|ZP_01034567.1| Sua5/YciO/YrdC family protein [Roseovarius sp. 217]
 gi|85672391|gb|EAQ27248.1| Sua5/YciO/YrdC family protein [Roseovarius sp. 217]
          Length = 313

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 138/324 (42%), Positives = 181/324 (55%), Gaps = 14/324 (4%)

Query: 1   MQIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           MQ  S++ D      A E   AG  +A PTETVYGL  D+RN  A+ R++E K RP  NP
Sbjct: 1   MQTRSLSPDPAGFASAAEIWRAGGLVAFPTETVYGLGADARNDLAVARIFEAKGRPRFNP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI HV   +M + +      +  LA  FWPGPLTLVL +L    +  L TA+L T   RV
Sbjct: 61  LIVHVESAAMAQTYVEWSDAAEILASAFWPGPLTLVLPILPGCGLSRLVTADLPTLAIRV 120

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+  +G P+A PSAN SG+IS T+ +H+L + +   I  ++DG    +G+ES
Sbjct: 121 PAHPIAHALLAEFGGPVAAPSANPSGRISPTSAEHVL-AGLSGRIEAVLDGEACPVGVES 179

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV +  E  +  LRPGG+  E L+ A+ V LE        P +PG + SHYAP  +VRL
Sbjct: 180 TIVGLAGEPTL--LRPGGIPGEVLEAALGVHLE-LYQTGDAPVAPGQMHSHYAPGVRVRL 236

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
            A      E L+ FG +           LNLS +G L EAA NLF ++   D    + IA
Sbjct: 237 NATDRQEGEVLLGFGPI--------DADLNLSPSGDLVEAAANLFGHLHALDALDVAGIA 288

Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322
            S IP+ GLG AIN+RL RAAAPR
Sbjct: 289 VSPIPDIGLGRAINDRLRRAAAPR 312


>gi|300853437|ref|YP_003778421.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
 gi|300433552|gb|ADK13319.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
          Length = 350

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 98/335 (29%), Positives = 169/335 (50%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A + +  G  +A PTETVYGL  ++ NP A+++++E K RP  NPLI H+SDI
Sbjct: 14  DMGIVEEAGKVIKEGGLVAFPTETVYGLGANALNPDAVKKIFEAKGRPQDNPLIVHISDI 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +K+    V  ++  L K FWPGP+T++L    +  I  +++A+L +   R+P     +
Sbjct: 74  EDIKELVVDVPKIAKKLMKKFWPGPMTIILP--KSQVIPDITSASLPSIGIRMPSNIIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI T   P+A PSAN SG+ S T+V+  +   +  ++  I+ G + ++G+ESTI++   
Sbjct: 132 ELIRTSKVPIAAPSANISGRPSPTDVERCI-EDLNGKVDFILGGDMCEVGVESTIIDCTV 190

Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
                +LRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ +++  
Sbjct: 191 N-PACVLRPGGITLEALKEIDDSIYIDPAVMKKPDKNLRPKAPGMKYRHYAPKAPLKIVK 249

Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
             +      I                      K+     + ++L     +   + NLF  
Sbjct: 250 GDLKKTIEKINEMVQNYIGENKVVGILATDETKDFYKNGLVISLGSRNNMISISKNLFET 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD     I   +   +G+G A+ NRL ++A 
Sbjct: 310 LRSFDDKNVDIIIAEAFDENGIGTAVMNRLNKSAG 344


>gi|331092053|ref|ZP_08340884.1| hypothetical protein HMPREF9477_01527 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402254|gb|EGG81825.1| hypothetical protein HMPREF9477_01527 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 534

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 102/336 (30%), Positives = 168/336 (50%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +   + +A + +  G  +A PTETVYGL  ++ +  A ++ YE K RP+ NPLI H++D
Sbjct: 41  IEKEVIEQAGKIIQEGGLVAFPTETVYGLGANALDEEAAKKTYEAKGRPSDNPLIIHIAD 100

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS + K   ++   ++ LA++FWPGPLT++ +   +  +   +T  L T   R+P     
Sbjct: 101 ISHLNKIVQNISKKAMDLAEVFWPGPLTMIFE--KSDIVPYGTTGGLDTVAVRMPDDIIA 158

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++LI   G  ++ PSAN SG+ S T  KH+    +   I +I+DGG   IG+ESTIV++ 
Sbjct: 159 RELILEGGGYISAPSANTSGRPSPTTAKHV-EEDMSGRIDMILDGGSVDIGVESTIVDMT 217

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240
            E  + ILRPG +    L+  I  V+++  +   + +  P++PGM   HYAP++Q+++  
Sbjct: 218 AEPPM-ILRPGAVTQRMLEEVIGEVQVDKTLLGEETSEAPKAPGMKYRHYAPKAQLKIVQ 276

Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
             +      I+                 +        A +   +         A NL+  
Sbjct: 277 GTLKDEVHAIKQLAYEKTKKGKKVGIIASTETAPQYTAGLIKPIGTRENQSSIAKNLYKV 336

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  DD     I   S    G+G AI NRLE+AA  
Sbjct: 337 LREFDDENVDCIYSESFSVDGIGSAIMNRLEKAAGH 372


>gi|168182249|ref|ZP_02616913.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Bf]
 gi|182674619|gb|EDT86580.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Bf]
          Length = 351

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + KA + L  G  +  PTETVYGL  ++ +  A++++++ K RP  NPLI H+S 
Sbjct: 13  IDEHVISKAGDILRQGGLVVFPTETVYGLGANALDKNAVKKIFKAKGRPQDNPLIVHISK 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  +++    +  ++  L   FWPGP+T++L       I   ++A L +   R+P     
Sbjct: 73  MKDIERLVEKIPSVAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP + +++ 
Sbjct: 190 IN-PPCILRPGGITLEMLKEVDSNIYIDSAIMKKPDKELKPKAPGMKYRHYAPNAPLKII 248

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLDTIAHNLFY 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345


>gi|149913215|ref|ZP_01901749.1| Sua5/YciO/YrdC family protein [Roseobacter sp. AzwK-3b]
 gi|149813621|gb|EDM73447.1| Sua5/YciO/YrdC family protein [Roseobacter sp. AzwK-3b]
          Length = 320

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 138/321 (42%), Positives = 183/321 (57%), Gaps = 13/321 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+    +A E L  G  +A PTETVYGL  D+RN  A+  ++E K RP  NPLI HV   
Sbjct: 11  DAQGYARAAEILHEGGRVAFPTETVYGLGGDARNDMAVAGIFEAKGRPRFNPLIVHVESA 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              + + +   L+  LA+ FWPGPLT+VL L   T + PL TA L T   RVP     + 
Sbjct: 71  QAAQAYVAWSDLAERLARAFWPGPLTMVLPLKPDTGLSPLVTAELPTLAIRVPAHPVAQA 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+ T+G P+A PSAN SG+IS T   H+L + +   I  ++DGG   +G+ESTI+ +  +
Sbjct: 131 LLRTFGGPVAAPSANPSGRISPTLAAHVL-AGLDGRIEAVLDGGACDVGVESTILGL-AD 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             V +LRPGG+  E ++  I   + +   E S   +PG L SHYAP + VRL A      
Sbjct: 189 GPV-LLRPGGIAAEEIEAVIGAPVGHHA-EGSAISAPGQLASHYAPGASVRLNAETRQDG 246

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E L+ FG V           LNLS  G L+EAA NLF ++   D  GA +IA S IP+ G
Sbjct: 247 ELLLGFGPVACD--------LNLSPKGDLREAAANLFGHLHALDGQGADAIAVSPIPDTG 298

Query: 307 LGIAINNRLERAAAPRNQSQR 327
           LG AIN+RL RAAAPR  + R
Sbjct: 299 LGRAINDRLRRAAAPRPGTDR 319


>gi|47096963|ref|ZP_00234539.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|224500715|ref|ZP_03669064.1| hypothetical protein LmonF1_14001 [Listeria monocytogenes Finland
           1988]
 gi|254828117|ref|ZP_05232804.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           N3-165]
 gi|254831036|ref|ZP_05235691.1| hypothetical protein Lmon1_06738 [Listeria monocytogenes 10403S]
 gi|254900320|ref|ZP_05260244.1| hypothetical protein LmonJ_10917 [Listeria monocytogenes J0161]
 gi|254913441|ref|ZP_05263453.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937822|ref|ZP_05269519.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900]
 gi|47014673|gb|EAL05630.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600502|gb|EEW13827.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           N3-165]
 gi|258610426|gb|EEW23034.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes F6900]
 gi|293591448|gb|EFF99782.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 345

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 175/336 (52%), Gaps = 19/336 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++    ++A + L  G  +A PTETVYGL  D+ N  A++++YE K RP+ NPLI H++ 
Sbjct: 13  SNQAIFQEAAKLLQGGECVAFPTETVYGLGADATNQAAVQKIYEAKGRPSDNPLIVHIAR 72

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
              + +  AS    ++ L + FWPGPLT++L L   + +    +A L T   R+P     
Sbjct: 73  REQMDQFVASYPAKAIQLMEKFWPGPLTVILPLKKDS-LATNVSAGLSTVGVRMPEHPVS 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI T   P+A PSANRSG+ S T   H++   +  +I  IIDGG + +GLEST+++  
Sbjct: 132 LALIGTANIPIAAPSANRSGKPSPTTASHVI-EDLDGKIAGIIDGGATGVGLESTVIDCS 190

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            E  + ILRPGG+  E +++ I           ET  P++PGM  +HYAP++ V L    
Sbjct: 191 LEIPI-ILRPGGVTKEQIEQIIGPVDISTNNTKETEKPKAPGMKYTHYAPKAPVYLIEGS 249

Query: 243 VNPREALI--------RFGNVPIKNIENAI-ISLNLSKTGK---LKEAAFNLFNYMKIAD 290
               ++ I        + G +  K + N +  S  +  TG    L E A +L+  ++  D
Sbjct: 250 TQFWQSEINKAEAANKKLGILATKELINQLNTSGTIETTGSIKALDEIATSLYKGLRAFD 309

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            +    I     P   LG AI NRLE+AA  R  ++
Sbjct: 310 HADVDMIFAEVYPEMELGAAIMNRLEKAAGDRRITE 345


>gi|18976678|ref|NP_578035.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638]
 gi|18892255|gb|AAL80430.1| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638]
          Length = 341

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 119/333 (35%), Positives = 176/333 (52%), Gaps = 24/333 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   LR A   +  G  +A PTETVYGL  D+ N  A RR++E K RPA NPLI H+++
Sbjct: 11  IDERKLRVAARLIREGKLVAFPTETVYGLGADALNEKAARRIFEAKGRPADNPLIVHIAE 70

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            S V + A  V   +  LAK FWPGPLT+VL       +  ++T  L T   R+P     
Sbjct: 71  FSQVYELAREVPEEAKMLAKKFWPGPLTIVLPRREI--VPDVTTGGLDTVAIRMPANEIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI+  G P+A PSAN SG+ S T  +H+ +     +I  IIDGG +KIG+EST++++ 
Sbjct: 129 LKLIKLSGRPIAAPSANISGKPSPTTAEHV-ADDFYGKIECIIDGGETKIGVESTVIDLT 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQV----- 236
               V +LRPGGL +E +++ I  V +   V   +    +SPGM   HYAP ++V     
Sbjct: 188 EWPPV-LLRPGGLPLEEIEKVIGEVRIHPAVFGKKVDVAKSPGMKYKHYAPDAEVIVVEG 246

Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                  ++  +    +E   R G +  ++  NA     L +T  ++E A NLF  ++  
Sbjct: 247 PKEKVKRKIAELVKEFKEKGKRVGVIGSESY-NADEFFYLGET--VEEVARNLFKALRYM 303

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D +    +    +   GLG+A+ NRL +AA  +
Sbjct: 304 DKAKVDIVLAEGVEEKGLGLAVMNRLRKAAGYK 336


>gi|254172885|ref|ZP_04879559.1| Sua5/YciO/YrdC/YwlC [Thermococcus sp. AM4]
 gi|214033041|gb|EEB73869.1| Sua5/YciO/YrdC/YwlC [Thermococcus sp. AM4]
          Length = 343

 Score =  348 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 112/336 (33%), Positives = 173/336 (51%), Gaps = 24/336 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M       LR A   +  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPLI H
Sbjct: 7   MKAGPDERLRVAARLIREGKLVAFPTETVYGLGADALNEKAVRRIFEAKGRPADNPLIIH 66

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +++   + + A  +   +L LA+ FWPGPLTLVL       +  ++T  L T   R+P  
Sbjct: 67  IAEREWLFELARDIPEKALELAERFWPGPLTLVLP--KGERVPSVTTGGLDTVAVRMPAH 124

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI   G P+A PSAN SG+ S T+  H++       I  I+DGG + IG+EST++
Sbjct: 125 PIALELIRLSGRPVAAPSANISGKPSPTDADHVV-DDFYGRIECIVDGGPTWIGVESTVL 183

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQV-- 236
           ++  +  V +LRPGGL +E ++  +  VE+   V        ++PGM   HY+P +QV  
Sbjct: 184 DLTGDVPV-LLRPGGLPLEEIEMVVGRVEIHPAVKGVEVDLARAPGMKYKHYSPNAQVIV 242

Query: 237 ----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                     ++  +    R   +R G +  +    A    +L ++   ++ A N+F  +
Sbjct: 243 VEGSRNAVREKIDELVREFRGKGLRVGVMATEE-HGADAFFHLGEST--EDVARNVFRAL 299

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  D +G   I    +   GLG+A+ NRL +AA  R
Sbjct: 300 RELDKAGVDVIIAEGVEERGLGLAVMNRLRKAAGYR 335


>gi|170761511|ref|YP_001785471.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408500|gb|ACA56911.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 351

 Score =  348 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 96/337 (28%), Positives = 164/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + KA + L  G  +  PTETVYGL  ++ +  A++++++ K RP  NPLI H+S 
Sbjct: 13  IDEDVISKAGDTLRRGGLVVFPTETVYGLGANALDKNAVKKIFKAKGRPQDNPLIVHISK 72

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  ++K     P ++  L   FWPGP+T++L       I   ++A L +   R+P     
Sbjct: 73  MKDIEKLVEEIPSVAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 IN-PPCILRPGGITLEMLKEVDSNIYIDPAIMEKPDKELKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLNTIAHNLFY 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345


>gi|170755509|ref|YP_001779769.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B1 str.
           Okra]
 gi|169120721|gb|ACA44557.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B1 str.
           Okra]
          Length = 351

 Score =  348 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S 
Sbjct: 13  IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           I  + +    + P++  L   FWPGP+T++L       I   ++A L +   R+P     
Sbjct: 73  IKDIDELVKKIPPIAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T+++  +   +   + +I+ G  S++G+EST+++  
Sbjct: 131 MELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E +K       I   +     +   P++PGM   HYAP++ +++ 
Sbjct: 190 IN-PPCILRPGGITLEMVKEVDSNIYIDPAIMKKPGKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLNTIAHNLFY 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345


>gi|57640883|ref|YP_183361.1| putative translation factor Sua5p-like protein [Thermococcus
           kodakarensis KOD1]
 gi|57159207|dbj|BAD85137.1| putative translation factor Sua5p homolog [Thermococcus
           kodakarensis KOD1]
          Length = 339

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 116/330 (35%), Positives = 172/330 (52%), Gaps = 23/330 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++ A   +  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPLI H++ I
Sbjct: 12  DEKKIKVAARLILEGKLVAFPTETVYGLGADALNEGAVRRIFEAKGRPADNPLIIHIASI 71

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
             ++K A  V   +  LA+ FWPGPLTLVL      ++  ++T  L T   R+P      
Sbjct: 72  DDLEKVAREVPEKAKLLAERFWPGPLTLVLPKRE--EVPLVTTGGLDTVAVRMPAHPIAL 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     PLA PSAN SG+ S T+ +H++     K I  IIDGG + +G+EST+V++  E
Sbjct: 130 ALIRASTPLAAPSANISGKPSPTSAEHVIDDFYGK-IEGIIDGGETWVGVESTVVDLTEE 188

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQV------- 236
             V +LRPGG+ +E L++ I  + +   V        ++PGM   HYAP + V       
Sbjct: 189 PPV-LLRPGGIPLEELEKVIGPIRIHPAVKGKKIDLAKAPGMKYKHYAPNAMVIVVEGTP 247

Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                +++ +    R+   R G +    +E A     L KT  L+E A NLF  ++  D 
Sbjct: 248 ENRRRKIQELVDEYRKKGHRVGVMATFEVE-ADEFYFLGKT--LEEVARNLFKALRELDK 304

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            G   I    +   G+G+A+ NRL +AA  
Sbjct: 305 RGVDVIIAEGVEEVGVGLAVMNRLRKAAGY 334


>gi|229542479|ref|ZP_04431539.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus coagulans 36D1]
 gi|229326899|gb|EEN92574.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus coagulans 36D1]
          Length = 353

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 109/334 (32%), Positives = 167/334 (50%), Gaps = 20/334 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L +A + L     +A PTETVYGL  D+ +  A+ ++++ K RP+ NPLI H+++   +
Sbjct: 20  QLAEAAQLLKEKQTVAFPTETVYGLGADATSDEAVDKIFKAKGRPSDNPLIVHIAEEKQL 79

Query: 71  KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           ++ A   P +   L K FWPGPLTLV+ +     +    TA L T   R+P       LI
Sbjct: 80  EELAEEIPETAKVLMKAFWPGPLTLVVKVKKGA-LSEKVTAGLDTVGIRMPRHPVALALI 138

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A PSANRSG+ S T  +H+    +  +I  I+DGG + +G+EST+++V  E  
Sbjct: 139 RMSGLPIAAPSANRSGKPSPTLARHV-REDLAGKIAGIVDGGETGVGVESTVLDVTAEVP 197

Query: 189 VRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQVRLRAIHVN 244
           V ILRPGG+  E L+  I  V L+  +  T     P++PGM  +HYAP + V L    + 
Sbjct: 198 V-ILRPGGVTKEQLEERIGKVRLDPGLKGTGAGARPKAPGMKYTHYAPDAPVYLVDGSIA 256

Query: 245 PREALIRFGN-----------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
             + +I                    I  A +     +   L+  A +L++ ++  +   
Sbjct: 257 FMQQMIDAHRKKGEVTGAIVTEETSGIVRADVVAVCGRRASLETVAQHLYDTLRSFNAQK 316

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
              I     P  G+G AI NRLE+AA  R   + 
Sbjct: 317 VDVIFSEIFPREGIGRAIMNRLEKAAGHRYVKEE 350


>gi|153956296|ref|YP_001397061.1| hypothetical protein CKL_3705 [Clostridium kluyveri DSM 555]
 gi|219856613|ref|YP_002473735.1| hypothetical protein CKR_3270 [Clostridium kluyveri NBRC 12016]
 gi|146349154|gb|EDK35690.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570337|dbj|BAH08321.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 350

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 96/335 (28%), Positives = 172/335 (51%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A E +  G  +A PTETVYGL  ++ +P A+ ++++ K RP  NPLI H+++I
Sbjct: 14  DIEIIKEAGEIIRNGGLVAFPTETVYGLGANALDPEAVEKIFKAKGRPQDNPLIVHIAEI 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +K  A  + P++L   + FWPGP+T++L    ++ +  +++A+L +   R+P     +
Sbjct: 74  EDMKPLAIDISPVALKFIQNFWPGPMTVILP--KSSIVPDITSASLDSVGIRMPSNVIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI+    P+A PSAN SG+ S T+V   +   +  ++ LI+ G +  +G+EST+++   
Sbjct: 132 ELIKAAKVPIAAPSANVSGKPSPTDVDRCI-EDLNGKVDLILGGSMCDVGVESTVIDCTV 190

Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
                ILRPGG+ +E L+       I   +    +  + P+SPGM   HYAP + V++  
Sbjct: 191 SPSC-ILRPGGITLEMLREIEKEVYIDPAIMKKAEGNNRPKSPGMKYRHYAPNAPVKIVK 249

Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
            ++N   A I                      +      + +++     +   + NLF  
Sbjct: 250 GNLNKTIAKINEMVENYISENKAVGIIATDETREFYKNALVISVGSRHNMLSVSKNLFET 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DDS    I   +    G+G+AI NRL ++A 
Sbjct: 310 LRSFDDSKVDIIISEAFEEKGIGLAIMNRLNKSAG 344


>gi|299821849|ref|ZP_07053737.1| Sua5/YciO/YrdC/YwlC family protein [Listeria grayi DSM 20601]
 gi|299817514|gb|EFI84750.1| Sua5/YciO/YrdC/YwlC family protein [Listeria grayi DSM 20601]
          Length = 343

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 107/340 (31%), Positives = 171/340 (50%), Gaps = 18/340 (5%)

Query: 2   QIMSITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           ++   + +  + +A  + L AG  IA PTETVYGL  D+ N  A+ ++Y  K RP+ NPL
Sbjct: 7   KLTDTSSNEEIYQAATDLLKAGECIAFPTETVYGLGADATNEAAVDKIYTAKGRPSDNPL 66

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++ +  ++     V   +  L K FWPGPLT++L L + + +    TA L++   R+
Sbjct: 67  IVHIAHLEQLESLVTDVPDKAKELIKHFWPGPLTIILPLKAGS-LAKNVTAGLQSVGIRM 125

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P        +   G PLA PSAN SG+ S T  +H+    +  +I  IIDGG + +GLES
Sbjct: 126 PENEVAHDFLAYSGLPLAAPSANSSGRPSPTTAQHV-QEDLTGKIAGIIDGGDTGVGLES 184

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           T+++        ILRPGG+  E ++  I           E   P++PGM  +HYAP++ V
Sbjct: 185 TVIDCTVPIPA-ILRPGGVTQEEIEAVIGQLAYTAVTSKEAEAPKAPGMKYTHYAPQAPV 243

Query: 237 RLRAIHVNPREALIRFGNVP-------IKNIENAIISLNL---SKTGKLKEAAFNLFNYM 286
            L           I             I   + A++  ++   S    L EAA +L++ +
Sbjct: 244 YLIEGSSAYWIKQIEAAKARGEKPGLLISEKQKAVLQQDIPVYSTGNSLAEAATHLYDGL 303

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           +  D    + I   + P  G+G+A+ NRLE+AA  +  ++
Sbjct: 304 RSFDHLDVTCIFAETYPQAGIGVALMNRLEKAAGGKYLTE 343


>gi|210614126|ref|ZP_03290062.1| hypothetical protein CLONEX_02275 [Clostridium nexile DSM 1787]
 gi|210150827|gb|EEA81835.1| hypothetical protein CLONEX_02275 [Clostridium nexile DSM 1787]
          Length = 521

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 106/335 (31%), Positives = 165/335 (49%), Gaps = 25/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  + +A E L+ G  +A PTETVYGL  ++ N  A R+ YE K RP+ NPLI H++DI
Sbjct: 28  DTEIIAEAGEILEKGGLVAFPTETVYGLGANALNEEAARKTYEAKGRPSDNPLIVHIADI 87

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             + +     P     + + FWPGPLTL+ +   +  +   +T  L+T   R+P     +
Sbjct: 88  QALDEIVEFIPEKAKSIVEKFWPGPLTLIFE--KSGVVPLGTTGGLQTVAVRMPEDEIAR 145

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G  ++ PSAN SG+ S T+ +H+ +  +  +I +IIDGG  +IG+ESTIV++  
Sbjct: 146 ALIRAGGGYVSAPSANTSGRPSPTSAEHV-AEDLDGKIDMIIDGGNVEIGVESTIVDMTV 204

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241
           E  + ILRPG +  E L+  I  V ++         + P++PGM   HYAP++Q+ +   
Sbjct: 205 EPPM-ILRPGAITKEMLEEVIGEVAVDRTTLSETSDAAPKAPGMKYRHYAPKAQLVIVNG 263

Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                   IR                      N+    I  ++         A NL+  +
Sbjct: 264 APLEAVKAIRQLAYEQMRRGNQVGIIATSETANLYTNGIVKSIGTRANENSIAKNLYKVL 323

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  DD   + I   +    G+G AI NRL +AA  
Sbjct: 324 REFDDEEVAYIFSEAFAVEGIGNAIMNRLIKAAGH 358


>gi|23100449|ref|NP_693916.1| hypothetical protein OB2994 [Oceanobacillus iheyensis HTE831]
 gi|22778682|dbj|BAC14950.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 339

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 106/325 (32%), Positives = 161/325 (49%), Gaps = 17/325 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +++A   L AG  +A PTETVYGL  D+ NP A+ ++++ K RP  NPLI HV+  
Sbjct: 14  NQSYIKEAAGILQAGQTVAFPTETVYGLGADATNPQAVSKIFQAKGRPEDNPLIAHVATK 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +++   S+      L   F PGPLT +L   S        TA L T   R+P      
Sbjct: 74  EQLQRLVTSIPGYVDKLIAAFSPGPLTFILP--SNGICASNVTAGLDTIGVRIPNHPVAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L++    P+A PSAN SG+ S T   H+ +  +   I  ++DGG + +GLEST+++   
Sbjct: 132 QLLKEVDIPIAAPSANISGKPSPTTADHVFND-LEGRIAGLVDGGPTGVGLESTVIDCTQ 190

Query: 186 EKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           E  V ILRPGG+  E L+  I   L     +D    P+SPGM   HYAP   + +     
Sbjct: 191 EIPV-ILRPGGVTKENLESVIGHVLVDPGIIDGEGKPKSPGMKYKHYAPEVPLWIFEGDS 249

Query: 244 NPREALI--------RFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGA 294
           N  + LI        R G +        +   N+ + G  ++E A +L++ ++       
Sbjct: 250 NGFQELIEKEQQSNHRVGVLCSNQFAVQLSHDNIYQLGDSMEEIASSLYDGLRYFKQQAV 309

Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319
             I   S P  G+G AI NRL +A+
Sbjct: 310 DVIICESFPESGIGQAIMNRLRKAS 334


>gi|315652210|ref|ZP_07905205.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saburreum DSM 3986]
 gi|315485516|gb|EFU75903.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saburreum DSM 3986]
          Length = 366

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 105/344 (30%), Positives = 175/344 (50%), Gaps = 30/344 (8%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I  +     +R A + + +G  +A PTETVYGL  D+    A +++Y  K RP+ NPLI 
Sbjct: 21  IDKLYQDEDIRLAADIIKSGGLVAFPTETVYGLGADAFMEEAAKKIYVAKGRPSDNPLIV 80

Query: 63  HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H+S+I  V   A  +  +   LAK +WPGP+T+VL   +   +   ++  L T   R+P 
Sbjct: 81  HISEIREVDDIAECIPDIFYSLAKKYWPGPMTVVLKKRNI--VPDATSGGLDTVAVRLPD 138

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + +I+  G P+A PSAN SG+ S T  +H+L   +  +I +IIDGG   IG+ESTI
Sbjct: 139 NNIARAIIKESGVPIAAPSANTSGRPSPTKARHVL-EDMNGKIDMIIDGGTVGIGVESTI 197

Query: 181 VNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +++  +    +LRPG + +E L+       I   +E+ +     P++PGM   HYAP++ 
Sbjct: 198 IDLTSDIP-TLLRPGAVTLEMLENTCKRVDIDPAIEHLLTGNEAPKAPGMKYKHYAPKAD 256

Query: 236 VRLRAIHVNPREALIRF---------GNVPIKNIENA----------IISLNLSKTGKLK 276
           ++L   + +     ++            + +   ++           I  L+L  +   +
Sbjct: 257 MKLVRGNESDVSKYLKGQIQNSDRLTAVLTVDEHKDMFDTVSSEKSNIKVLSLGSSKNPE 316

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             A+NLF+ ++  D+ G   I   S    G+G AI NRL++AA 
Sbjct: 317 SIAYNLFDILRKCDELGVEYIFSESFDERGIGKAIMNRLKKAAG 360


>gi|227529625|ref|ZP_03959674.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vaginalis ATCC
           49540]
 gi|227350415|gb|EEJ40706.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus vaginalis ATCC
           49540]
          Length = 351

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 107/332 (32%), Positives = 174/332 (52%), Gaps = 19/332 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A + +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ + M
Sbjct: 21  DEINQAAKAIQDGKLVAFPTETVYGLGADATNEAAVKNVYLAKGRPSDNPLIVHVASVEM 80

Query: 70  VKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           V+++ASV P  +  L K FWPG LT++L++     +    T  L T  FR P C  T  L
Sbjct: 81  VERYASVIPDNARKLMKKFWPGSLTIILNIKKGV-LSKTVTGGLSTVAFRFPDCQPTLDL 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+  PSAN SG+ S T  +H+    +  +I  IID G +++G+EST++++  + 
Sbjct: 140 IKKAGVPIVGPSANTSGKPSPTTAQHVY-HDLHGKIAGIIDNGPTRVGVESTVLDMSTDH 198

Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            V ILRPG +    ++  I       + V +  TP++PGM   HYAP +QV +     + 
Sbjct: 199 PV-ILRPGAVTKHQIEEVIGSIDLNHHHVGKNETPKAPGMKYKHYAPNAQVYIVDEGTDW 257

Query: 246 REALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-G 293
           ++ +      P         K ++ A + +N    S    + +A+  LF+ ++  DD   
Sbjct: 258 KQVVDWIKQQPFDVGMMAEEKILQQATLPMNAIQFSLGKNVADASARLFDGLRQFDDQPN 317

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             +I   + P   LG A  NRL ++A   + +
Sbjct: 318 VKAIVTQAFPAKDLGRAYMNRLNKSAGGEHFA 349


>gi|240103997|ref|YP_002960306.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family
           [Thermococcus gammatolerans EJ3]
 gi|239911551|gb|ACS34442.1| Translation factor, putative, Sua5/YciO/YrdC/YwlC family
           [Thermococcus gammatolerans EJ3]
          Length = 343

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/336 (34%), Positives = 174/336 (51%), Gaps = 24/336 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M       L+ A   +  G  +A PTETVYGL  D+ N  A+RR++E K RPA NPLI H
Sbjct: 7   MRAGPDERLKVAARLIVEGKLVAFPTETVYGLGADALNERAVRRIFEAKGRPADNPLIIH 66

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +++   + + A  V  ++L LA+ FWPGPLTLVL       +  ++T  L T   R+P  
Sbjct: 67  IAESEWLFELAREVPEVALRLAERFWPGPLTLVLP--KGEKVPSVTTGGLDTVAVRMPAH 124

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI   G P+A PSAN SG+ S T   H++       I  IIDGG + IG+EST++
Sbjct: 125 PIALELIRLSGRPIAAPSANISGKPSPTEADHVV-DDFYGRIECIIDGGPTPIGVESTVL 183

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST--PQSPGMLKSHYAPRSQVRL 238
           ++  E  V +LRPGGL +E ++R I  V++   V        ++PGM   HY+P +QV L
Sbjct: 184 DLTGEVPV-LLRPGGLPLEDIERVIGRVDVHPAVKGIEVNLAKAPGMKYKHYSPNAQVIL 242

Query: 239 ------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                         I    R   ++ G +  +   +A    +L +   ++E A N+F  +
Sbjct: 243 VEGPREAVRRKMEEIVEEFRSRGLKVGVMATEKY-DADAFFHLGE--SMEEVARNVFRAL 299

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  D +G   I    I   GLG+A+ NRL +AA  +
Sbjct: 300 RELDKAGVDVILAEGIEERGLGLAVMNRLRKAAGYK 335


>gi|209886040|ref|YP_002289897.1| Sua5/YciO/YrdC/YwlC family protein [Oligotropha carboxidovorans
           OM5]
 gi|209874236|gb|ACI94032.1| Sua5/YciO/YrdC/YwlC family protein [Oligotropha carboxidovorans
           OM5]
          Length = 322

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 137/324 (42%), Positives = 183/324 (56%), Gaps = 7/324 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    +  + A R A E L AG  +A PTETVYGL  D  N +AI RLYE K RP+ NPL
Sbjct: 1   MTTKILPAAEATRPAAECLAAGGLVAFPTETVYGLGADGTNGSAIARLYEAKGRPSFNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV  +   ++ A  +  +  LA+ FWPGPLTLVL   +   +  L+TA L+T   R+P
Sbjct: 61  IAHVPTLEAAQRIARFNDTAFKLARAFWPGPLTLVLPKTADCPVSDLATAGLETVAVRIP 120

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + +++  G P+  PSANRSG +S T   H+    +   I LI+DGG  ++G+EST
Sbjct: 121 AHPVAQAILQALGRPIVAPSANRSGHVSPTTAAHV-RDDLDGRIDLIVDGGPVQVGVEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY-CVDETSTPQSPGMLKSHYAPRSQVRL 238
           IV         +LRPGG     ++  +   L        + P +PGML SHYAP + VRL
Sbjct: 180 IVGCT--GTPILLRPGGTPRAAIEAVLGTPLARQPAPVQNGPLAPGMLASHYAPSANVRL 237

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
            A  +   EAL+ FG  P      A  +LNLS  G L EAA NLF++++  D++GA +IA
Sbjct: 238 NATELRNGEALLAFG--PPLPGAPAGRTLNLSPRGDLIEAAANLFSHLRALDETGARTIA 295

Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322
              IP  GLG AIN+RL RAAA R
Sbjct: 296 VMPIPTAGLGEAINDRLRRAAAER 319


>gi|294501877|ref|YP_003565577.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium QM B1551]
 gi|294351814|gb|ADE72143.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium QM B1551]
          Length = 346

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 160/326 (49%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A + L     +A PTETVYGL  D+ +  A+ +++  K RP+ NPLI H+ D   +
Sbjct: 20  QIEEAADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQL 79

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 +   +  +   FWPGPLT++L       +    TA L +   R+P       L+
Sbjct: 80  HTFVESIPSKAEKVIDAFWPGPLTVILP--KKDRVSDKVTAGLNSIAVRMPSHPVALALL 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+A PSAN SG+ S T   H+++  +   I  ++DGG + +G+EST+++   E  
Sbjct: 138 KKVALPIAAPSANLSGKPSPTLAHHVMND-LEGRISGVVDGGATGVGVESTVLDCTEEIP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL-------- 238
           + ILRPGG+  + L+  I  V+++   + +   P+SPGM  +HYAP + + +        
Sbjct: 197 I-ILRPGGITQKELENVIGPVKVDRALLSDKEAPKSPGMKYTHYAPDAPLVIVDGSSDFF 255

Query: 239 RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           ++I    ++   R G +     E+   A   +       L+  A +L+  ++  ++    
Sbjct: 256 QSIIDGYKDQGKRVGVLTTSEHEDAYKADAVITCGSRSNLETVASHLYESLRSFNECDVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S    G+G A+ NRL +AA  
Sbjct: 316 IIVSESFSEEGVGHAVMNRLMKAAGH 341


>gi|126734644|ref|ZP_01750390.1| Sua5/YciO/YrdC family protein [Roseobacter sp. CCS2]
 gi|126715199|gb|EBA12064.1| Sua5/YciO/YrdC family protein [Roseobacter sp. CCS2]
          Length = 348

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/316 (41%), Positives = 177/316 (56%), Gaps = 13/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L KA E L AG  ++ PTETVYGL  D+ N  A+ R+YE K RP+ NPLI HV D+
Sbjct: 45  DVAGLEKAAEILRAGGLVSFPTETVYGLGADACNDRAVARIYEAKGRPSFNPLIVHVPDM 104

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126
           +  +++   +  +  LA+ FWPG LTLVL + +   I  L TA L T   RVP       
Sbjct: 105 AAAERYCDFNETARQLAQAFWPGALTLVLPVKAEAGISKLVTAGLDTLAIRVPDHPVAGA 164

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +  P+A PSAN SG +S T   H+ ++ +   I  +IDGG   +G+ESTIV+    
Sbjct: 165 LLSAFAGPVAAPSANPSGYVSPTMAAHV-AAGLGDRIDAVIDGGACLVGVESTIVSCV-- 221

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LR GG  +E L+  +   L     +  T  +PG L SHYAP+ +VRL A +    
Sbjct: 222 GTPSLLRAGGTPVEVLEACLGRPL-VASQDPDTLTAPGQLASHYAPQGKVRLNAPYAQEG 280

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E L+ FG V  +        LNLS  G L +AA  LF  +   D  GA +IA S IP+HG
Sbjct: 281 EVLLGFGPVEAE--------LNLSAAGDLTQAAARLFACLHELDAMGAKAIAVSPIPDHG 332

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL+RA APR
Sbjct: 333 LGRAINDRLKRAGAPR 348


>gi|163732340|ref|ZP_02139786.1| Sua5/YciO/YrdC family protein [Roseobacter litoralis Och 149]
 gi|161394638|gb|EDQ18961.1| Sua5/YciO/YrdC family protein [Roseobacter litoralis Och 149]
          Length = 331

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 176/315 (55%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A + L  G  +A PTETVYGL  D+RN  A+  ++E K RP+ NPLI HV D +
Sbjct: 30  PDGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVAAIFEAKGRPSFNPLIVHVLDAT 89

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
             ++       +  LA  FWPGPL+LVL L     +  L +A L T   RVP     + L
Sbjct: 90  HARRFCHWSDTAEKLASAFWPGPLSLVLPLTEGHGLSSLVSAGLSTVALRVPAHPTARAL 149

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +  P+A PSAN SG+IS T  +H+ S  +   +  I+D G  ++GLESTIV +  + 
Sbjct: 150 LRAFDGPVAAPSANPSGKISPTTAQHV-SDGLGMRVGAILDDGPCRVGLESTIVGL--DG 206

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LRPGGL  E ++R +  +L    +      +PG L SHYAP  +VRL A   +  E
Sbjct: 207 PASLLRPGGLPAEEIERVLGQKLSRETEG--KISAPGQLMSHYAPNGRVRLNAQRAHDGE 264

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             + FG +           LNLS +G L EAA  LF+ +   D +G S+IA + IP  GL
Sbjct: 265 VFLGFGEMTCD--------LNLSPSGDLTEAASVLFDCLHQLDATG-SAIAVAPIPRQGL 315

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL+RAAAPR
Sbjct: 316 GAAINDRLQRAAAPR 330


>gi|296109437|ref|YP_003616386.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME]
 gi|295434251|gb|ADG13422.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus infernus ME]
          Length = 313

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 113/320 (35%), Positives = 175/320 (54%), Gaps = 15/320 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T+ N ++KA E +  G  +A PTETVYGL  D+ N  A+ +++E+K+RP ++P+I 
Sbjct: 2   ILKATEEN-IKKAAEVIRKGGLVAFPTETVYGLGADALNKEAVAKIFEVKQRPLIDPVIV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           H+S    ++K A    L+  LAK FWPGPLT+VL       +  + TA L     R+P  
Sbjct: 61  HISKFEDLEKLAYPTELAYKLAKAFWPGPLTMVLP--KKEVVPSIVTAGLDFVAIRMPAH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               KLIE     +A PSAN   ++S T  +H+    +  ++ +I+DGG   +G+ESTI+
Sbjct: 119 PVALKLIEESKTFIAAPSANLFSKLSPTRAEHVY-EQLGDKVDIILDGGKCDVGVESTII 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           ++  E    ILR GGL++E +++ I         E    ++PGMLK HY+P + +++   
Sbjct: 178 DLTTE-PPTILRLGGLDVEAIEKVIGEV--KITKENKKIKAPGMLKKHYSPTTPLKIMKE 234

Query: 242 ---HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
                N R  L+ F   P +  E   I   LS+ G L+EAA NL++ +   D      I 
Sbjct: 235 PKPIPNLRCGLLAF-KEPREGFEVVEI---LSRKGDLREAAANLYDSLHRLDKQNLDIII 290

Query: 299 FSSIPNHGLGIAINNRLERA 318
             ++P  GLG AI +RL +A
Sbjct: 291 AEAVPEVGLGRAIMDRLRKA 310


>gi|28210066|ref|NP_781010.1| SUA5 protein [Clostridium tetani E88]
 gi|28202501|gb|AAO34947.1| SUA5 protein [Clostridium tetani E88]
          Length = 350

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 165/335 (49%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  L++  E L  G  +  PTETVYGL  ++    A+++++E K RP  NPLI H+S++
Sbjct: 14  ENKILKECGEALRNGKLVVFPTETVYGLGANALKEDAVKKIFEAKGRPQDNPLIVHISEL 73

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +       P ++  L + FWPGP+T++L    ++ I   ++  L +   R+P     +
Sbjct: 74  EEIAPLVEEVPKIAYKLMEKFWPGPMTIILP--KSSLIPSRTSGGLNSVGIRMPSNEIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI+    P+A PSAN SG+ S TN++  +   +  ++  II G    +G+EST+++   
Sbjct: 132 KLIKEAKVPIAAPSANISGRPSPTNIETCI-EDLKGKVDYIIGGEKCDVGVESTVIDCTI 190

Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
                +LRPGG+ +E LK       I   +    ++   P++PGM   HYAP++++++  
Sbjct: 191 -YPPCVLRPGGITLEMLKNIDNKIYIDPAIMAGDNKDLKPKAPGMKYRHYAPKAELKIIR 249

Query: 241 IHVNPREALIR------------FGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFNY 285
             +      I+             G +         +    ++L     L+  A NLF+ 
Sbjct: 250 GDLKNSVDKIKKLTDEYESQGKNVGIMATDETREFYVNGQVISLGGRENLETIARNLFSV 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  D      I   +    G+GIAI NRL+++A 
Sbjct: 310 LRSFDSKNVDIILSETFEEKGIGIAIMNRLKKSAG 344


>gi|239624950|ref|ZP_04667981.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521336|gb|EEQ61202.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 380

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 100/338 (29%), Positives = 153/338 (45%), Gaps = 28/338 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A   L  G  +A PTETVYGL  ++ +  A R++Y  K RP+ NPLI H+S  +
Sbjct: 43  DEELAEAAAVLKGGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHISCAA 102

Query: 69  MVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-K 126
            +       P +   L + FWPGPLT++     ++ +   +T  L T   R+P      +
Sbjct: 103 ELAPLVREIPEAGRKLMEAFWPGPLTMIFP--KSSKVPYGTTGGLDTVAVRMPDDPVASR 160

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV+V   
Sbjct: 161 LIALAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIDMIIDGGPVGIGVESTIVDVSSP 219

Query: 187 KKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
               +LRPG + +E L+  +        +   V E   P++PGM   HYAP++++ L   
Sbjct: 220 VP-SVLRPGAITMEMLREVLGEVAVDPAILGPVKEDVKPKAPGMKYRHYAPKAELTLVET 278

Query: 242 HVNPREALIRFGNVPIKNI-----------------ENAIISLNLSKTGKLKEAAFNLFN 284
                  + +   +  + +                        ++      +  A NL+ 
Sbjct: 279 TGPVGRMVEKVKELAHEKLVQGCQVGIICTDESRSCYAEGTVRSIGARESQESVAHNLYA 338

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            ++  DD     I   S     LG AI NRL +AA  +
Sbjct: 339 VLREFDDLKVEYIFSESFSEDHLGQAIMNRLSKAAGYK 376


>gi|150395706|ref|YP_001326173.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium medicae WSM419]
 gi|150027221|gb|ABR59338.1| Sua5/YciO/YrdC/YwlC family protein [Sinorhizobium medicae WSM419]
          Length = 324

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 158/319 (49%), Positives = 210/319 (65%), Gaps = 2/319 (0%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I    A+  AC  L    P+AIPTETVYGLA D+    AI R+YE+K RP  NPLICHV
Sbjct: 8   RIEPERAIETACAVLSDAEPVAIPTETVYGLAADATTSDAISRIYEMKGRPRFNPLICHV 67

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           SD++M + H + DPLS  LA+ FWPGPLTL+L     + +H L++A L T   R+P GF+
Sbjct: 68  SDLAMAEAHVTFDPLSRRLAEAFWPGPLTLILPQRHESTVHTLASAGLDTLGIRMPDGFS 127

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++I  +G PLA PSAN SG+IS T+  H+    +   + LI+D G + IGLESTIV V 
Sbjct: 128 RRVIARFGRPLAAPSANTSGKISPTSAAHVQGD-LGPRLKLILDAGPAAIGLESTIVKV- 185

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
               +R+LRPGGL+   ++    + +E      +T ++PGML SHYAPR+ VR+ A  V 
Sbjct: 186 DNGALRLLRPGGLDAAEIEALTGLAIERPETAGATIEAPGMLASHYAPRAAVRINADDVR 245

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             EALIRFG   +    +A I ++LS TG L+EAA NLF+YMK AD SGA++IAF  IP+
Sbjct: 246 RGEALIRFGGKALPGEGDAAIVMDLSPTGSLREAAANLFDYMKKADVSGAATIAFGPIPS 305

Query: 305 HGLGIAINNRLERAAAPRN 323
            GLG AI +RL+RAAAPR+
Sbjct: 306 EGLGEAIIDRLQRAAAPRS 324


>gi|77464318|ref|YP_353822.1| translation factor SUA5 [Rhodobacter sphaeroides 2.4.1]
 gi|77388736|gb|ABA79921.1| translation factor SUA5 [Rhodobacter sphaeroides 2.4.1]
          Length = 312

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 135/315 (42%), Positives = 184/315 (58%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  +A+PTETVYGLA D+R+  A+ R++E K RP  NPLI H+ D+ 
Sbjct: 11  AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLE 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL L  T  + PL +A L T   RVP     ++L
Sbjct: 71  AARRYARFDDEALRLAEAFWPGPLTLVLPLGDT-PVSPLVSAGLSTVAIRVPAHPLAQQL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T  +H+L   +   I  ++DGG   +G+ESTI  +   +
Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTI--LAPGE 186

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LRPGGL  E L+  +   L         P +PG L SHYAP + VRL A    P E
Sbjct: 187 PPLLLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           + I FG +            NLS +G L EAA NLF++++ AD  G   IA + +P  GL
Sbjct: 246 SWIGFGKLGGPQ--------NLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 297 GRAINDRLRRAAAPR 311


>gi|331002522|ref|ZP_08326040.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410338|gb|EGG89772.1| hypothetical protein HMPREF0491_00902 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 366

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 106/346 (30%), Positives = 172/346 (49%), Gaps = 34/346 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             + ++  +++A + + +G  +A PTETVYGL  ++    A +++Y  K RP+ NPLI H
Sbjct: 17  CKLYENADIKEAADIIRSGGLVAFPTETVYGLGANALMSEAAKKIYAAKGRPSDNPLIVH 76

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           +S    V   A  +  +   LA+ FWPGP+T+VL   S   I   ++  L T   R+P  
Sbjct: 77  ISKTEDVNNIAREIPEIFYKLAECFWPGPMTVVLKKRSI--IPDDTSGGLDTVAVRLPDN 134

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + LIE    P+A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV
Sbjct: 135 NIARALIEVSKVPIAAPSANTSGRPSPTRASHVF-DDMDGRIDMIIDGGTVGIGVESTIV 193

Query: 182 NVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ++  +    +LRPG +  E L+       I   +E+ +     P++PGM   HYAP++ +
Sbjct: 194 DLTGDIP-TLLRPGAVTFEMLREVCTEVDIDPAIEHLLASGEAPKAPGMKYKHYAPKADM 252

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS----------------------LNLSKTGK 274
           ++   +       ++   +    I+ AI++                      L+L     
Sbjct: 253 KMLKGNEAAVLDYLK-KEISKSEIKTAILTVDEHRAVLEKIIEDNKKENIKLLSLGSLKD 311

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +K  A NLF+ ++  D+ G S+I   S    G+G AI NRL++A+ 
Sbjct: 312 MKTVAHNLFDVLRKCDELGVSTILSESFDESGIGRAIMNRLKKASG 357


>gi|90425777|ref|YP_534147.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisB18]
 gi|90107791|gb|ABD89828.1| translation factor SUA5 [Rhodopseudomonas palustris BisB18]
          Length = 327

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 138/317 (43%), Positives = 185/317 (58%), Gaps = 5/317 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + KA + L  G  +A PTETVYGL  D+ N  AI RLY+ K RP+ NPLI HV+D++
Sbjct: 14  EDGVAKAVKCLRDGGLVAFPTETVYGLGCDAGNAAAIARLYQAKGRPSFNPLIAHVADLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
             ++    D  +  LA  FWPGPLTLV+       +  L+TA L T   RVP     + +
Sbjct: 74  AAERIGRFDGDARRLAASFWPGPLTLVVPKAEHCPVADLATAGLDTVAIRVPLHPVAQAI 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G  +  PSANRSG +S T   H+    +   I LI++GG   +G+ESTIV      
Sbjct: 134 LRGFGGAVVAPSANRSGHVSPTTAAHV-HVDLDGRIQLIVNGGPVSVGVESTIVACF--D 190

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           +  +LRPGGL  E ++  +   L   V    T P +PGML SHYAPR++VRL A HV P 
Sbjct: 191 QPVLLRPGGLPREKIEAVLGRALAQPVAADPTRPLAPGMLASHYAPRTKVRLEATHVEPG 250

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EAL+ FG   +  ++   + +NLS+ G L EAA NLF Y++  D  GAS IA   +P HG
Sbjct: 251 EALLAFGAAALPGVDATTVVMNLSEQGDLAEAAANLFGYLRALDAKGASGIAVMPVPRHG 310

Query: 307 LGIAINNRLERAAAPRN 323
           LG AIN+RL RAA PR 
Sbjct: 311 LGEAINDRLRRAALPRE 327


>gi|332559208|ref|ZP_08413530.1| translation factor SUA5 [Rhodobacter sphaeroides WS8N]
 gi|332276920|gb|EGJ22235.1| translation factor SUA5 [Rhodobacter sphaeroides WS8N]
          Length = 312

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 134/315 (42%), Positives = 184/315 (58%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  +A+PTETVYGLA D+R+  A+ R++E K RP  NPLI H+ D+ 
Sbjct: 11  AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLE 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL L  T  + PL +A L T   R+P     ++L
Sbjct: 71  AARRYARFDDEALRLAEAFWPGPLTLVLPLGDT-PVSPLVSAGLSTVAIRMPAHPLAQQL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T  +H+L   +   I  ++DGG   +G+ESTI  +   +
Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTI--LAPGE 186

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LRPGGL  E L+  +   L         P +PG L SHYAP + VRL A    P E
Sbjct: 187 PPLLLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           + I FG +            NLS +G L EAA NLF++++ AD  G   IA + +P  GL
Sbjct: 246 SWIGFGKLGGP--------RNLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 297 GRAINDRLRRAAAPR 311


>gi|295707225|ref|YP_003600300.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium DSM 319]
 gi|294804884|gb|ADF41950.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus megaterium DSM 319]
          Length = 346

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 92/326 (28%), Positives = 160/326 (49%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A + L     +A PTETVYGL  D+ +  A+ +++  K RP+ NPLI H+ D   +
Sbjct: 20  QIEEAADLLRNHEVVAFPTETVYGLGGDATSDKAVDKIFAAKGRPSDNPLIVHIGDKEQL 79

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 +   +  +   FWPGPLT++L       +    TA L +   R+P       L+
Sbjct: 80  HTFVESIPSKAEKVIDAFWPGPLTVILP--KKDRVSDKVTAGLNSIAVRMPSHPVALALL 137

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+A PSAN SG+ S T   H+++  +   I  ++DGG + +G+EST+++   E  
Sbjct: 138 KKVALPIAAPSANLSGKPSPTLAHHVMND-LEGRISGVVDGGATGVGVESTVLDCTEEIP 196

Query: 189 VRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL-------- 238
           + ILRPGG+  + L+  I  V+++   + +   P+SPGM  +HYAP + + +        
Sbjct: 197 I-ILRPGGITQKELENVIGPVKVDRALLSDKEAPKSPGMKYTHYAPDAPLVIVDGSSDFF 255

Query: 239 RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           ++I    ++   R G +     E+   A   +       L+  A +L+  ++  ++    
Sbjct: 256 QSIIDRYKDQGKRVGVLTTSEHEDAYKADAVITCGSRSNLETVASHLYESLRSFNEGDVD 315

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            I   S    G+G A+ NRL +AA  
Sbjct: 316 VIVSESFSEEGVGHAVMNRLMKAAGH 341


>gi|254459968|ref|ZP_05073384.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium HTCC2083]
 gi|206676557|gb|EDZ41044.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 310

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 122/314 (38%), Positives = 172/314 (54%), Gaps = 14/314 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A   L  G  +A PTETVYGL  D+R+  A+ ++Y  K RP+ NPLI HV+D   
Sbjct: 10  SDIARAAGLLSDGKLVAFPTETVYGLGADARDGEAVAKIYAAKGRPSFNPLIVHVADADA 69

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
            +        +  LA  FWPGP++LVL L     +  L TA L++   RVP     + L+
Sbjct: 70  ARTFGVWSDTAQRLADAFWPGPVSLVLPLRKHAGLSDLVTAGLESVALRVPAGHLAQDLL 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +G P+A PSAN SG+IS T  +H+  + +  +I  ++DGG   +G+ESTIV +     
Sbjct: 130 NAFGGPIAAPSANPSGRISPTTPEHVF-AGLDGKIAAVLDGGACAVGVESTIVGLTDHPT 188

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           +  LR GG   ET++  +  EL   V       +PG L SHYAP + VRL        E 
Sbjct: 189 L--LRAGGASRETIEERLCFELATPVSGE--ISAPGQLASHYAPNASVRLNVEDWQSGEK 244

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
            + FG +           LNLS++G L EAA NLF ++ + D    + IA ++IP  GLG
Sbjct: 245 TLGFGKMACD--------LNLSESGNLIEAAANLFGHLHLLDAMEGTRIAVATIPETGLG 296

Query: 309 IAINNRLERAAAPR 322
            AIN+RL RAAAPR
Sbjct: 297 AAINDRLRRAAAPR 310


>gi|14521794|ref|NP_127270.1| sua5 related protein [Pyrococcus abyssi GE5]
 gi|5459014|emb|CAB50500.1| Putative translation factor, SUA5 related protein [Pyrococcus
           abyssi GE5]
          Length = 340

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 111/333 (33%), Positives = 173/333 (51%), Gaps = 24/333 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +   +R A  F+  G  +A PTETVYGL  ++ +  A++R++E K RPA NPLI H++ 
Sbjct: 11  IEEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRIFEAKGRPADNPLIIHIAS 70

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
              ++  A  +   +  LAK FWPGPLTLVL    +  +  + T  L T   R+P     
Sbjct: 71  FEQLEVLAKEIPEEAEMLAKRFWPGPLTLVLP--KSEVVPRVITGGLDTVAVRMPAHEIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLIE    P+A PSAN SG+ S T+  H+ +     +I  IIDGG ++IG+EST++++ 
Sbjct: 129 LKLIELSERPIAAPSANISGKPSPTSAHHV-AEDFYGKIECIIDGGETRIGVESTVIDLT 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQV----- 236
               V +LRPGGL +E +++ I  + +   V      T ++PGM   HYAP ++V     
Sbjct: 188 EWPPV-LLRPGGLPLEEIEKVIGEIRIHPAVYGKSVDTAKAPGMKYRHYAPSAEVIVVEG 246

Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                  ++  +    +E   + G +      +A     L  T  ++E A NLF  ++  
Sbjct: 247 PRDKVRRKIEELIAKFKEEGKKVGVIG-SGSYDADEVFYLGDT--VEEIARNLFKALRHM 303

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D +G   I    +   GLG+A+ NRL +A+  R
Sbjct: 304 DRTGVDVILAEGVEEKGLGLAVMNRLRKASGYR 336


>gi|260431590|ref|ZP_05785561.1| Sua5/YciO/YrdC family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415418|gb|EEX08677.1| Sua5/YciO/YrdC family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 316

 Score =  345 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 133/309 (43%), Positives = 168/309 (54%), Gaps = 14/309 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  GL +A PTETVYGL  D+RN  A+  +Y  K RP+ NPLI HV+ +   ++H   
Sbjct: 21  ELLRQGLLVAFPTETVYGLGADARNGEAVAAIYAAKGRPSFNPLIAHVASVEAAQRHVEW 80

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135
              +  LA  FWPGPLTLVL L +   +  L TA L T   RVP     + L+     P+
Sbjct: 81  SDQAQQLADAFWPGPLTLVLPLRAGHGVSSLVTAGLDTLAVRVPAHPTAQALLRAVDGPV 140

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+IS T   H+    +   I  I+D G   +GLESTIV +       +LRPG
Sbjct: 141 AAPSANPSGRISPTTAAHV-REGLDGRIAAILDDGPCAVGLESTIVGL--AGTPALLRPG 197

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  E ++  +  +L +         +PG L+SHYAP + VRL A      E L+ FG V
Sbjct: 198 GVAAEQIEAVLGTKLSHH-KPGDLLTAPGQLQSHYAPDAPVRLNAEQRRGDEVLLGFGPV 256

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
                      LNLS+ G L EAA NLF  +   D SG   IA S IP HGLG AIN+RL
Sbjct: 257 ACD--------LNLSERGDLLEAAANLFASLHELDKSG-RPIAVSPIPGHGLGAAINDRL 307

Query: 316 ERAAAPRNQ 324
            RAAAPRN 
Sbjct: 308 RRAAAPRNS 316


>gi|20806674|ref|NP_621845.1| putative translation factor (Sua5) [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515125|gb|AAM23449.1| putative translation factor (Sua5) [Thermoanaerobacter
           tengcongensis MB4]
          Length = 355

 Score =  345 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 106/337 (31%), Positives = 168/337 (49%), Gaps = 26/337 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A E +  G  +A PTETVYG+  +S +  A++R++  K RP  NPLI H++ +  
Sbjct: 16  ELIDYAAEVIKKGGLVAFPTETVYGIGANSFDEEAVKRIFIAKGRPQDNPLILHIALMDQ 75

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           V +  A     +  LA  FWPGPLT+VL    +  +  ++TA + T   R+P       L
Sbjct: 76  VYELAAEFPEKAKKLAHRFWPGPLTVVL--KKSDKVPYVNTAGMNTVAIRMPSNPIAHLL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P++ PSAN SG+ S T+  H++   +  ++ +IIDGG   +GLEST+V++  E 
Sbjct: 134 IKRAGVPISAPSANVSGKPSPTDASHVI-EDLYGKVDVIIDGGKCDVGLESTVVDLTEEV 192

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            V ILRPG + +E LK  +  V+L+  +    DE   P+SPGM   HY+P+++V +    
Sbjct: 193 PV-ILRPGAVTLEMLKEVLGEVKLDPSLLTRPDENIKPKSPGMKYKHYSPKAEVYIVKGP 251

Query: 243 VNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           ++     I+                  V           + +    K +  A NLF  ++
Sbjct: 252 LDKVVKKIQQLAKNQLKNGKKVGIMATVQTSTQYKEGEIIVVGDRDKPETIAKNLFETLR 311

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
             D  G   +   S     +G+AI NRLE+AA  +  
Sbjct: 312 EFDRRGVEVVFAESFNYDDIGLAIMNRLEKAAGYKEI 348


>gi|328544911|ref|YP_004305020.1| translation factor sua5 protein [polymorphum gilvum SL003B-26A1]
 gi|326414653|gb|ADZ71716.1| Probable translation factor sua5 protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 332

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 137/313 (43%), Positives = 183/313 (58%), Gaps = 4/313 (1%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
              CE L AG  + +PTETVYGLA D+ N  A   +Y  K RP  NPLI H+  +   ++
Sbjct: 20  AAVCEALLAGNLVGVPTETVYGLAADATNGRACAAIYAAKGRPRFNPLISHLESLDAARR 79

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETY 131
           H   D  +  LA+ FWPGPLTLV+   + + I  L TA L T   RVP     + + E  
Sbjct: 80  HGVFDARAHALAQAFWPGPLTLVVPKAAGSPICDLVTAGLDTVALRVPAAPVMRFLAERT 139

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PLA PSAN SG+IS T    ++   +   +  +ID G   IG+ESTIV +   + V +
Sbjct: 140 GRPLAAPSANLSGRISATTADDVIRD-LGDAVAFVIDAGPCPIGIESTIVGLAGAEPV-L 197

Query: 192 LRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           LRPGG+  E ++R +   L     ++   PQ+PGML SHYAP + VRL A  V   EAL+
Sbjct: 198 LRPGGIAREAIERVLGRPLAAAQTEQADAPQAPGMLTSHYAPNATVRLAATEVASGEALL 257

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG  P   +E A+ ++NLS TG L EAA  LF+ ++  D SGA++I    IP+ GLG A
Sbjct: 258 AFGPTPPAGVERAVATVNLSPTGDLAEAAATLFSALRRLDASGAATICVQPIPDGGLGEA 317

Query: 311 INNRLERAAAPRN 323
           IN+RL RAAAPR+
Sbjct: 318 INDRLRRAAAPRH 330


>gi|114767661|ref|ZP_01446371.1| Sua5/YciO/YrdC family protein [Pelagibaca bermudensis HTCC2601]
 gi|114540329|gb|EAU43423.1| Sua5/YciO/YrdC family protein [Roseovarius sp. HTCC2601]
          Length = 318

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 132/317 (41%), Positives = 180/317 (56%), Gaps = 11/317 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +    L +G  +A PTETVYGL  D+ N  A+ R+YE K RP+ NPLI H++D+
Sbjct: 12  DPEGLARGAGILRSGGLLAFPTETVYGLGGDACNDRAVARIYEAKGRPSFNPLIVHLADL 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
             VK       L+   A  FWPGPLT+VL L  +  +  L TA L +   R+P     + 
Sbjct: 72  DAVKALVVWSDLAEAAAAAFWPGPLTMVLPLRESAKVSKLVTAGLDSLAVRMPANPVARA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +G P+A PSANRSG+IS T  +H+L  ++   I  ++DGG   +GLESTI+ +   
Sbjct: 132 LLAEFGGPVAAPSANRSGRISPTRAEHVL-DTLDGRIEGVLDGGRCDVGLESTILGL--A 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            K  +LRPG + I+ L + +   +     +     +PG L SHYAPR++VRL A      
Sbjct: 189 GKPTLLRPGRIGIDALSQVLGRPVME-RKDREQISAPGQLSSHYAPRARVRLNAAEWQEG 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EA + FG             LNLS +G L EAA NLF Y+   D  GA +IA   +P+ G
Sbjct: 248 EARLGFGQT------EGDCDLNLSPSGDLVEAAANLFEYLHRLDADGAETIAVMPVPHVG 301

Query: 307 LGIAINNRLERAAAPRN 323
           LGIAIN+RL RAAAPR+
Sbjct: 302 LGIAINDRLSRAAAPRD 318


>gi|317130767|ref|YP_004097049.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315475715|gb|ADU32318.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 350

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 111/325 (34%), Positives = 165/325 (50%), Gaps = 19/325 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A   L +   +A PTETVYGL  ++ +  AI R+++ K RP+ NPLI H+S+   ++
Sbjct: 24  IQCAATQLASNEVVAFPTETVYGLGGNALSDQAIERIFKAKGRPSDNPLIVHISNKKQLQ 83

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            +   +   +  L   FWPGPLT+VL+      +    TA L T   R+P       LIE
Sbjct: 84  HYVKHIPNSARKLIDAFWPGPLTIVLEHNKK--LSTRVTAQLSTVAVRMPDHPVALALIE 141

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +  +I  IIDGG + +G+EST+V+   E  V
Sbjct: 142 AANVPLAAPSANTSGKPSPTTADHV-RKDLAGKISTIIDGGTTGVGVESTVVDCTSE-TV 199

Query: 190 RILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRL--------R 239
            +LRPGG+  E L+  +  VE++   V    TP+SPGM  +HYAP + ++L        R
Sbjct: 200 MLLRPGGISKEALEEIVGVVEVDPALVAADHTPKSPGMKYTHYAPDAPLQLIDGSTDFFR 259

Query: 240 AIHVNPREALIRFGNVPI---KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            I  +      + G +     K +  A   + L K   L   A  L++ ++  D +    
Sbjct: 260 KIVEDAINNGKKVGVLVTEENKGLTRANQEVILGKRSDLSTVAQTLYSSLRSFDKNVVDI 319

Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321
           I     P  GLG AI NRL++AA  
Sbjct: 320 IFTEVFPETGLGSAIMNRLKKAAGG 344


>gi|78044541|ref|YP_361354.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996656|gb|ABB15555.1| Sua5/YciO/YrdC/YwlC family protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 342

 Score =  345 bits (886), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 111/343 (32%), Positives = 167/343 (48%), Gaps = 23/343 (6%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I  +   N     + +A E++  G  +A PTETVYGL  D+ NP A+ +++  K RP  
Sbjct: 4   RIFKVNPENPEQTIINEAAEYIKKGELVAFPTETVYGLGADAFNPAAVLKIFAAKGRPQD 63

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++    + +  A VD  +  L + FWPGPLT+VL      D+  + +A L T  
Sbjct: 64  NPLIVHIARHEDIYRVAARVDVRAQKLMEKFWPGPLTIVLPRRE--DLPAVVSAGLPTVA 121

Query: 117 FRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       LIE    P+A PSANRSG+ S T+ +H+L   +   IP+++ GG  ++G
Sbjct: 122 VRLPDHPVAVMLIEAAQTPIAAPSANRSGRPSPTSYEHVL-DDLSGIIPVVLAGGNCRVG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +EST++++     V +LRPGG+  E L+  I     +   +   P++PGM   HYAPR+ 
Sbjct: 181 VESTVLDLTVTPPV-VLRPGGITPEMLEEVIGEVRYFNAKDLDAPKAPGMKYPHYAPRAP 239

Query: 236 VRLRAI-------HVNPREALIRFGNVPIKNIENAIIS------LNLSKTGKLKEAAFNL 282
           V L                A    G +  K  +           L L       E   NL
Sbjct: 240 VYLVKTPEEILKRARELGAAGKNVGLLISKETKEQFFPNYSQNLLVLGSRNNPSELLHNL 299

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           +  ++  D      I     P  GL +A+ NRL++AAA R  S
Sbjct: 300 YEKLREFDRRDVELILAEVYPEEGLYLALMNRLKKAAAGRYLS 342


>gi|160881865|ref|YP_001560833.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans
           ISDg]
 gi|160430531|gb|ABX44094.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium phytofermentans
           ISDg]
          Length = 352

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 117/337 (34%), Positives = 171/337 (50%), Gaps = 27/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S   ++A E L  G  +A PTETVYGL  D+ + TA RR+YE K RP+ NPLI H+++I
Sbjct: 14  NSEDFKEAVELLKEGQLVAFPTETVYGLGGDALDKTAARRIYEAKGRPSDNPLIVHIANI 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             +K+ A  V   +  LA  FWPGPLT++L    +  +   +T  L T   R+P     +
Sbjct: 74  EALKELAVEVPEEAYRLADDFWPGPLTMIL--KKSDLVPLETTGGLDTVAIRMPSDEIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI+  G  LA PSAN+SG+ S T  +H++   +   + +IIDGG S IGLESTIV++  
Sbjct: 132 RLIKESGLYLAAPSANKSGRPSTTKAEHVI-EDLDGCVSMIIDGGSSTIGLESTIVDLTG 190

Query: 186 EKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTP---QSPGMLKSHYAPRSQVRLR 239
           +  V ILRPG +  E L + I     +      E S P   ++PGM   HYAP+ Q+ + 
Sbjct: 191 DNPV-ILRPGFITREMLNQCIGGTEYDKAVLKKEKSDPVVAKAPGMKYRHYAPKGQLTIY 249

Query: 240 AIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
               N     I                      KN+ +     ++      +  A +LF 
Sbjct: 250 EGDTNQVIKAINEAAKQKTEEGFHVGILATEETKNLYSYGDVKSIGTRKNEETIAAHLFE 309

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D S A+ I   S  ++ LG AI NRL +AA  
Sbjct: 310 CLREFDTSNAAYIFSESFEDNYLGQAIMNRLLKAAGY 346


>gi|288959229|ref|YP_003449570.1| translation factor [Azospirillum sp. B510]
 gi|288911537|dbj|BAI73026.1| translation factor [Azospirillum sp. B510]
          Length = 331

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 128/318 (40%), Positives = 185/318 (58%), Gaps = 6/318 (1%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T +  L++A E L AG  +A PTETVYGL  D+ +  A+  ++  K RP  NPLI H+ D
Sbjct: 19  TTAAGLKRAGELLRAGRLVAFPTETVYGLGADATDDRAVAAIFAAKGRPQFNPLIAHLPD 78

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           ++  +     D  +L LA  FWPGPLT+V+   + + +  L +A L +   RVP     +
Sbjct: 79  LASAQSWGLFDERALDLAAQFWPGPLTMVVPRPANSALSLLVSAGLDSIAIRVPGHPVAQ 138

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            ++   G P+A PSANRSG +S T   H+L  S+ + +  I+ GG   +GLEST++++  
Sbjct: 139 AILRAAGKPIAAPSANRSGAVSPTTPHHVL-ESLGERVDAIVTGGKCMVGLESTVIDLTG 197

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            + V +LRPG +  + ++R I   +     + + P+SPG L+SHYAP + VRL A     
Sbjct: 198 PEAV-LLRPGAVLPDEMERLIG-PVRLSAGDPTAPKSPGQLESHYAPDAAVRLNASSAAE 255

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA + FG  P + +      LNLS  G L EAA NLF++++  D SGA  IA   IP  
Sbjct: 256 DEAFLTFG--PDRFVFGGATRLNLSLEGDLNEAAANLFSHLRSLDQSGAKRIAVMPIPEL 313

Query: 306 GLGIAINNRLERAAAPRN 323
           GLG+AIN+RL RAAAPR 
Sbjct: 314 GLGLAINDRLRRAAAPRG 331


>gi|291526379|emb|CBK91966.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium rectale DSM 17629]
          Length = 502

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 103/346 (29%), Positives = 170/346 (49%), Gaps = 30/346 (8%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D   +++A + + AG  +A PTETVYGL  D+ +P A +++Y  K RP+ 
Sbjct: 4   KIIKIDQDNLDHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+SD S +++ A  V   +  L+  FWPGPLT++++      +   +T  + T  
Sbjct: 64  NPLIVHISDFSDLERIAKTVPEDARKLSDAFWPGPLTMIVE--KGDAVPYATTGGMDTVA 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       LI   G  +A PSAN SG+ S T   H+ +  +  +I +IIDGG   IG
Sbjct: 122 VRMPNHPIALDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHY 230
           +ESTI+++  +  + +LRPG +  + L + +  E+         D+T  P++PGM   HY
Sbjct: 181 IESTIIDLTEDTPM-VLRPGYITPQMLSKVLGKEVVIDPGIIAADDTRKPKAPGMKYKHY 239

Query: 231 APRSQV---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275
           AP++ +                L A H +  + +        K   +A + L++      
Sbjct: 240 APKADMVIVDGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADE 299

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
              A  L+  ++  D+     I   S     +G AI NR+ +AA  
Sbjct: 300 DSIAHELYRILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAGH 345


>gi|238922539|ref|YP_002936052.1| putative translation factor (SUA5) [Eubacterium rectale ATCC 33656]
 gi|238874211|gb|ACR73918.1| putative translation factor (SUA5) [Eubacterium rectale ATCC 33656]
          Length = 502

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 103/346 (29%), Positives = 170/346 (49%), Gaps = 30/346 (8%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D   +++A + + AG  +A PTETVYGL  D+ +P A +++Y  K RP+ 
Sbjct: 4   KIIKIDQDNLDHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+SD S +++ A  V   +  L+  FWPGPLT++++      +   +T  + T  
Sbjct: 64  NPLIVHISDFSDLERIAKTVPEDARKLSDAFWPGPLTMIVE--KGDAVPYATTGGMDTVA 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       LI   G  +A PSAN SG+ S T   H+ +  +  +I +IIDGG   IG
Sbjct: 122 VRMPNHPIALDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHY 230
           +ESTI+++  +  + +LRPG +  + L + +  E+         D+T  P++PGM   HY
Sbjct: 181 IESTIIDLTEDTPM-VLRPGYITPQMLSKVLGKEVIIDPGIIAADDTRKPKAPGMKYKHY 239

Query: 231 APRSQV---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275
           AP++ +                L A H +  + +        K   +A + L++      
Sbjct: 240 APKADMVIVDGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADE 299

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
              A  L+  ++  D+     I   S     +G AI NR+ +AA  
Sbjct: 300 DSIAHELYRILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAGH 345


>gi|115526373|ref|YP_783284.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisA53]
 gi|115520320|gb|ABJ08304.1| translation factor SUA5 [Rhodopseudomonas palustris BisA53]
          Length = 327

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 139/324 (42%), Positives = 190/324 (58%), Gaps = 6/324 (1%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++S +DS A+ +A   L  G  +A PTETVYGL  D+   TA+ RLY+ K RPA NPLI
Sbjct: 8   RLLSASDS-AVDRAVACLIDGGLVAFPTETVYGLGADATQATAVARLYQAKGRPAFNPLI 66

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV+D++  +K    D  +L LA+ FWPGPLTLV+   +   +  L+TA L T   R+P 
Sbjct: 67  AHVADLAAAQKIGRFDQNALRLAQAFWPGPLTLVVQKAAGCPVAELATAGLDTIAIRIPA 126

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + ++   G P+  PSANRSG +S T   H+    +   I LI+DGG   +G+ESTI
Sbjct: 127 HAVARAILRGLGRPVVAPSANRSGHVSPTTAAHV-RGDLDGRIDLIVDGGPVTVGVESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-STPQSPGMLKSHYAPRSQVRLR 239
           V      K  +LRPGGL  + ++  +   L    +   + P +PGML SHYAPRS+VRL 
Sbjct: 186 VGCFA--KPVLLRPGGLPRQAIEAVLGEPLASPGEAAGAKPLAPGMLASHYAPRSRVRLD 243

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A  V P EAL+ FG+   +  + A   LNLS  G L EAA NLF +++  D +    IA 
Sbjct: 244 ATRVEPGEALLAFGSPLPQGADLAATVLNLSARGDLTEAAANLFGHLRALDGASPRGIAV 303

Query: 300 SSIPNHGLGIAINNRLERAAAPRN 323
             +P+ GLG AIN+RL RAA PR 
Sbjct: 304 MPVPHEGLGEAINDRLARAAVPRE 327


>gi|291526824|emb|CBK92410.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium rectale M104/1]
          Length = 502

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 103/346 (29%), Positives = 170/346 (49%), Gaps = 30/346 (8%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D   +++A + + AG  +A PTETVYGL  D+ +P A +++Y  K RP+ 
Sbjct: 4   KIIKIDQDNLDHKLMQEAGDLIAAGELVAFPTETVYGLGGDALDPEASKKIYSAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+SD S +++ A  V   +  L+  FWPGPLT++++      +   +T  + T  
Sbjct: 64  NPLIVHISDFSDLERIAKTVPEDARKLSDAFWPGPLTMIVE--KGDAVPYATTGGMDTVA 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       LI   G  +A PSAN SG+ S T   H+ +  +  +I +IIDGG   IG
Sbjct: 122 VRMPNHPIALDLIRRSGCLIAAPSANTSGRPSPTEAAHV-AEDLSGKIAMIIDGGPVGIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHY 230
           +ESTI+++  +  + +LRPG +  + L + +  E+         D+T  P++PGM   HY
Sbjct: 181 IESTIIDLTEDTPM-VLRPGYITPQMLSKVLGKEVIIDPGIIAADDTRKPKAPGMKYKHY 239

Query: 231 APRSQV---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL 275
           AP++ +                L A H +  + +        K   +A + L++      
Sbjct: 240 APKADMVIVDGTRKHVIAKINELVASHRDDGKKIAVIATEETKQFYDADVVLSMGSRADE 299

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
              A  L+  ++  D+     I   S     +G AI NR+ +AA  
Sbjct: 300 DSIAHELYRILRDCDELDVDVIFSESFSTPRIGQAIMNRMLKAAGH 345


>gi|260429406|ref|ZP_05783383.1| Sua5/YciO/YrdC family protein [Citreicella sp. SE45]
 gi|260420029|gb|EEX13282.1| Sua5/YciO/YrdC family protein [Citreicella sp. SE45]
          Length = 315

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 128/325 (39%), Positives = 180/325 (55%), Gaps = 12/325 (3%)

Query: 1   MQIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M    +T D   + +A   L  G  +A PTETVYGL  ++ +  A+  ++E K RP+ NP
Sbjct: 1   MATQRLTADPEGIARAATLLRDGQLVAFPTETVYGLGGNALDDRAVAGIFEAKGRPSFNP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI H++D+  VK+      L+   A++FWPGPLT+VL + +   +  L +A L +   R+
Sbjct: 61  LIVHLADLDAVKELVQWSDLADVAAQVFWPGPLTMVLPIRAGAKVSKLVSAGLDSLAVRM 120

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + L+   G P+A PSANRSG+IS T  +H+L  ++   I  ++DGG   +GLES
Sbjct: 121 PASPVARTLLRECGCPVAAPSANRSGRISPTRAEHVL-ETLDGRIAAVLDGGPCDVGLES 179

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TI+ +    K  +LRPG +    L  A+   +    D      +PG L SHYAP ++VRL
Sbjct: 180 TILGLT--GKPTLLRPGRVTAALLSEALGRPVMERRD-RDQISAPGQLASHYAPNARVRL 236

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
            A   +  EA + FG             LNLS  G L EAA NLF Y+   D SGA  IA
Sbjct: 237 NASEWHEGEARLGFGRT------EGDCDLNLSPAGDLVEAAANLFEYLHRLDSSGAEVIA 290

Query: 299 FSSIPNHGLGIAINNRLERAAAPRN 323
              +P+ GLG+AIN+RL RAAAPR 
Sbjct: 291 VMPVPHVGLGVAINDRLSRAAAPRG 315


>gi|56695212|ref|YP_165560.1| Sua5/YciO/YrdC family protein [Ruegeria pomeroyi DSS-3]
 gi|56676949|gb|AAV93615.1| Sua5/YciO/YrdC family protein [Ruegeria pomeroyi DSS-3]
          Length = 316

 Score =  344 bits (884), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 130/317 (41%), Positives = 172/317 (54%), Gaps = 14/317 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A E L  G  +A PTETVYGL  D+ N  A+  +Y  K RP+ NPLI HV+  
Sbjct: 12  DPDGIARAAELLRDGRLVAFPTETVYGLGGDATNGQAVAGIYAAKGRPSFNPLIAHVASA 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126
              ++H      +  LA  FWPGPLTLVL L +   I  L TA L T   RVP   T + 
Sbjct: 72  EAARRHVHWSETAERLATAFWPGPLTLVLPLRANHGISELVTAGLDTLAVRVPAHPTART 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+ T   P+A PSAN SG+IS T   H+L + +   I  ++D G   +G+ESTIV +   
Sbjct: 132 LLATLDRPVAAPSANPSGRISPTTADHVL-AGLDGRIAAVLDAGPCGVGVESTIVGLS-- 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LRPGGL  E ++  +   L     +     +PG L SHYAP+S VRL A   +  
Sbjct: 189 GTPILLRPGGLPTEEIEALLGQPLARH-QQGDNISAPGQLLSHYAPQSTVRLNARAPSDG 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E  + FG +            NLS +G L EAA NLF  +   D +G   IA + IP  G
Sbjct: 248 EVFLGFGPMDCDE--------NLSPSGNLTEAAANLFAALHRLDTTG-KPIAIAPIPERG 298

Query: 307 LGIAINNRLERAAAPRN 323
           LG+AIN+RL RAAAPR+
Sbjct: 299 LGLAINDRLRRAAAPRD 315


>gi|219670827|ref|YP_002461262.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense
           DCB-2]
 gi|219541087|gb|ACL22826.1| Sua5/YciO/YrdC/YwlC family protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 348

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 113/348 (32%), Positives = 175/348 (50%), Gaps = 30/348 (8%)

Query: 1   MQIMSIT------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           MQ   +T       +  +++A + +  G  +A+PTETVYGL  ++ +  A + ++++K R
Sbjct: 1   MQTKRVTIDAQHPQTEWIKEAAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGR 60

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           P  NPLI H+SD++MVK+      P +   A  FWPGPLTLVL+   T  +  + +  L 
Sbjct: 61  PQDNPLIVHISDLAMVKRLVEEWTPQAALCADKFWPGPLTLVLE--KTAFVPDVVSGGLG 118

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P      +LI+  G P+A PSAN SG+ S T   H+    +  +IPLI+DGG  
Sbjct: 119 TVAIRMPQHPVALELIKEAGVPIAAPSANLSGKPSPTRGIHVWKD-LKGKIPLILDGGPC 177

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
            +G+EST++++  E    ILRPGG+  E L+  +             P++PGM   HYAP
Sbjct: 178 AVGVESTVLDLTGEVP-TILRPGGITKEQLEEVLGEVAVDRPAPDQAPKAPGMKYRHYAP 236

Query: 233 RSQVRL---------RAIHVNPREALIRFGNVPIKNIENAIISLN---------LSKTGK 274
           + ++ L         R I    R+   R   V I     +   L+         L     
Sbjct: 237 KGELTLLIGERKNVIRKIKDELRKGHSRLKKVGILCTLESAPELHSQLPDLLFVLGSEHH 296

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +E A NL+  +++ D+ G   I    +   GLG AI NRL++A+  R
Sbjct: 297 PEEVAGNLYQGLRLCDEQGMDMILAEGVSEKGLGFAIMNRLQKASGQR 344


>gi|240143383|ref|ZP_04741984.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis L1-82]
 gi|257204651|gb|EEV02936.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis L1-82]
 gi|291537128|emb|CBL10240.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis M50/1]
 gi|291540366|emb|CBL13477.1| Sua5/YciO/YrdC/YwlC family protein [Roseburia intestinalis XB6B4]
          Length = 350

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 107/336 (31%), Positives = 164/336 (48%), Gaps = 26/336 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   +R+A E + +G  +A PTETVYGL  ++ +P A +R+Y  K RP+ NPLI H+   
Sbjct: 14  NKEDMREAAEIIRSGGLVAFPTETVYGLGANALDPEASKRIYAAKGRPSDNPLIVHICRF 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +   A  V P +  LA  FWPGPLT+++       +   +T  + T   R+P      
Sbjct: 74  EELLSIAKEVPPQAEKLADAFWPGPLTMIV--WKNEKVPYETTGGMDTVAIRMPNHPVAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G  +A PSAN SG+ S T   H+    +  +IP+I+DGG   IG+ESTI+++  
Sbjct: 132 ALIDESGCMIAAPSANTSGKPSPTEAGHVALD-LDGKIPMILDGGPVGIGIESTIIDLT- 189

Query: 186 EKKVRILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQVRL-- 238
           EK   ILRPG +  E L+  +  E+         D T  P++PGM   HYAP++ + L  
Sbjct: 190 EKVPMILRPGYITKEMLEEVLGEEVRIDPGIIASDSTKKPKAPGMKYKHYAPKADLVLVE 249

Query: 239 ----------RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNY 285
                      A+    + A ++ G V     E+   A   + +         A +L+  
Sbjct: 250 GEQEAVVAEINALVREKQAAGLKVGVVATDETESLYQADYVVTIGARSDEDAIARHLYKI 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  DD    +I   S     +G AI NRL +AA  
Sbjct: 310 LREFDDWNVDAIYSESFSTPRIGQAIMNRLMKAAGH 345


>gi|315641823|ref|ZP_07896827.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus italicus DSM
           15952]
 gi|315482498|gb|EFU73037.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus italicus DSM
           15952]
          Length = 346

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 109/337 (32%), Positives = 179/337 (53%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  I+ ++ +++A  ++  G  +A PTETVYGL   + NP A++++Y++K RP+ NPL
Sbjct: 1   MEIQKIS-TDEVKQAAHYIQQGELVAFPTETVYGLGASALNPQAVKKVYQVKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     PL+  L + FWPGPLT++L +   T    + T  L T  FR+
Sbjct: 60  IVHVTSFEQVKEYIQESHPLAEVLVQTFWPGPLTIILPIKPNT-FDTVVTGGLATVAFRM 118

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T +LI   G PL  PSAN SG  S T  +H++       I  ++DGG +KIG+ES
Sbjct: 119 PDQALTLELIRQAGVPLVGPSANLSGHPSPTTAEHVI-HDFEHSIKGVLDGGPTKIGVES 177

Query: 179 TIVNVQC-EKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRS 234
           T++++    K   ILRPG +  E L++A    +    + +     P++PGM   HYAP  
Sbjct: 178 TVLDLSDPNKPPMILRPGAVTKEMLEQACHTPVAVDSHLLRADEAPKAPGMKYKHYAPVV 237

Query: 235 QVRLRA----------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
            V++            +  +P  A I  G    + +     ++ +     ++ A   LF+
Sbjct: 238 PVQMVHEQEWEQVASYLAHHPIRAGILAGPTAAEVVRGEAAAVYMYADDSVQAATQGLFS 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++  D+  +G   +  ++ P  GLG+A  NRL++AA
Sbjct: 298 GLRALDETKAGLDCLYVATYPEDGLGVAYMNRLKKAA 334


>gi|221640201|ref|YP_002526463.1| translation factor SUA5 [Rhodobacter sphaeroides KD131]
 gi|221160982|gb|ACM01962.1| Translation factor SUA5 [Rhodobacter sphaeroides KD131]
          Length = 312

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 135/315 (42%), Positives = 184/315 (58%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  +A+PTETVYGLA D+R+  A+ R++E K RP  NPLI H+ D+ 
Sbjct: 11  AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLG 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL L  T  + PL +A L T   RVP     ++L
Sbjct: 71  AARRYARFDDEALRLAEAFWPGPLTLVLPLGDT-PVSPLVSAGLSTVAIRVPAHPLAQQL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T  +H+L   +   I  ++DGG   +G+ESTI  +   +
Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPEHVL-DGLSGRIEAVLDGGTCGVGVESTI--LAPGE 186

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LRPGGL  E L+  +   L         P +PG L SHYAP + VRL A    P E
Sbjct: 187 PPLLLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           + I FG +            NLS +G L EAA NLF++++ AD  G   IA + +P  GL
Sbjct: 246 SWIGFGKLGGP--------RNLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 297 GRAINDRLRRAAAPR 311


>gi|229826322|ref|ZP_04452391.1| hypothetical protein GCWU000182_01694 [Abiotrophia defectiva ATCC
           49176]
 gi|229789192|gb|EEP25306.1| hypothetical protein GCWU000182_01694 [Abiotrophia defectiva ATCC
           49176]
          Length = 349

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 113/334 (33%), Positives = 166/334 (49%), Gaps = 25/334 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L KA E +  G  +A PTETVYGL  +  +  A+ ++YE K RP+ NPLI H+S+  
Sbjct: 15  KEGLYKAAEIIKNGGLVAFPTETVYGLGANGLDENAVPKIYEAKGRPSDNPLILHISEFD 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +K     +  ++  LA  FWPGPLT+V     +  +   +T  L++   R+P     ++
Sbjct: 75  EIKNIVKEIPDVAFVLADEFWPGPLTMVF--KKSDIVPYRTTGGLESVAVRMPSNKIARE 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ S T   H+L   +  +I ++IDGG   IGLESTIV+V  E
Sbjct: 133 LIKIAGVPVAAPSANSSGRPSPTKADHVLCD-LDGKIDMVIDGGTVDIGLESTIVDVTGE 191

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRA 240
             V ILRPG +  E L  AI  V+++  V     D+   P++PGM   HYAP+ ++ +  
Sbjct: 192 VPV-ILRPGFITEEMLSEAIGRVDIDEAVKSLTLDKNLKPKAPGMKYRHYAPQGKMTIYK 250

Query: 241 IHVNPREALIR-------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                   +I                    K    A I +++      +  A NLF+ ++
Sbjct: 251 GKPEKVVKIINEETAKSEGKKTAVLATDETKRYYKADIVISVGSREDCESIAHNLFDTLR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             DD GA  I         LG AI NRL ++A  
Sbjct: 311 SFDDMGAEIIFSEGFDESRLGFAIMNRLHKSAGY 344


>gi|304393470|ref|ZP_07375398.1| Sua5/YciO/YrdC family protein [Ahrensia sp. R2A130]
 gi|303294477|gb|EFL88849.1| Sua5/YciO/YrdC family protein [Ahrensia sp. R2A130]
          Length = 337

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/314 (41%), Positives = 179/314 (57%), Gaps = 8/314 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T  +   +A   L  G  + +PTETVYGLA D+ N TA+ ++Y  K RP  NPLI HV 
Sbjct: 17  MTTGDGFEQAARILREGGLLGVPTETVYGLAADACNATAVAKIYAAKGRPDFNPLIVHVD 76

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            + M ++ A  DPLS  LA+ FWPGPLTLVL L     + P  TA L T   R P G   
Sbjct: 77  SLKMAEELAVFDPLSRRLAEEFWPGPLTLVLPLRGDAALAPSVTAGLGTVALRQPIGVLA 136

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L  + G  +A PSAN SG+IS T  +H+ +  +   + L++DGG   +G+ESTIV    
Sbjct: 137 ELASSLGTGIAAPSANSSGRISPTTAQHV-ADDLEDRVDLVLDGGTCAVGVESTIVKCT- 194

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             K+ ILR GG+  + L     +      +++   ++PG L +HYAP   +R+ A  V+ 
Sbjct: 195 NGKINILRTGGITADQLTEIAPLAEP---EKSGKIEAPGQLLAHYAPDVPLRMNAHEVDE 251

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            E  + FG  P   + +A  SLNLS TG + EAA NLF  MK  D +G + IA   +P +
Sbjct: 252 GEGQLAFGPAP---LHSAGPSLNLSPTGDVAEAARNLFAMMKTLDSAGVAGIAVQPVPEN 308

Query: 306 GLGIAINNRLERAA 319
           G+G AIN+RL RAA
Sbjct: 309 GIGAAINDRLRRAA 322


>gi|323142098|ref|ZP_08076946.1| Sua5/YciO/YrdC/YwlC family protein [Phascolarctobacterium sp. YIT
           12067]
 gi|322413485|gb|EFY04356.1| Sua5/YciO/YrdC/YwlC family protein [Phascolarctobacterium sp. YIT
           12067]
          Length = 368

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 106/335 (31%), Positives = 166/335 (49%), Gaps = 25/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   +++A   + AG  ++ PTETVYGL  D  NP A+ +++  K RP  NPLI H++  
Sbjct: 14  NQEIMQEAAALIRAGEVVSFPTETVYGLGADGLNPEAVAKIFAAKGRPNDNPLILHIAKK 73

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + +  + ++  +  L + FWPGPLTL+++   +  +    +A L+T   R P   F +
Sbjct: 74  EDIAQLTTCLNANAKKLMEHFWPGPLTLIVN--KSAIVPDAVSAGLETVAVRFPSNKFAQ 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             I   G P+A PSAN SG+ S TN + +L   +  +I  ++DGG   IGLEST+V+   
Sbjct: 132 DFIRACGCPIAAPSANISGRPSPTNAQDVL-EDMQGKIAGMLDGGNCGIGLESTVVDTTS 190

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAIH 242
                ILRPGG+  E L   +  VE++  +  D+   P++PGM   HYAP++ V L    
Sbjct: 191 AVP-TILRPGGITYEMLTEVMGAVEIDPALQGDKNFKPKAPGMKYRHYAPKAPVYLFEGE 249

Query: 243 VNPR---------EALIRFGNVPIKNIENAII------SLNLSKTGKLKEA-AFNLFNYM 286
                              G +    +E+ +        L LS  G  +E  A +LF  +
Sbjct: 250 ACKCLPQVIAKALAEGKTVGVLCGHELESELAELVEKQQLQLSCWGDSREQLAADLFYLL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  D +    I    +   GLG+AI NRL +AA  
Sbjct: 310 RDFDRTCPDVILAEGVEEDGLGLAIMNRLRKAAGY 344


>gi|206901525|ref|YP_002250522.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740628|gb|ACI19686.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 337

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 113/328 (34%), Positives = 165/328 (50%), Gaps = 20/328 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  AL KA + LDAG  +A PTETVYGL  D+ NP A+R+++  K RP  NP+I HV   
Sbjct: 13  DLEALEKAAQVLDAGGLVAFPTETVYGLGADALNPEAVRKIFVAKGRPQDNPIIVHVGKK 72

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             V   A  V P++  L + FWPGPLTL+     +  ++ + TA       R P      
Sbjct: 73  EQVYSLAENVSPIAERLMERFWPGPLTLIF--YKSNLVNDIVTAGSPKVGIRQPMNKVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL+E +G P+A PSAN SG+ S T  +H++   +   I +IIDGG    G+EST+++V  
Sbjct: 131 KLLEIFGRPIAAPSANASGRPSPTRAEHVI-EDLGDRIDMIIDGGEVSFGVESTVLDVTT 189

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
           +  + I RPG    E ++R I  ++      +T    SPG+   HYAP+  + +      
Sbjct: 190 DPPI-IYRPGACPKEEIERVIGRKVLLWRGKKTEDIPSPGLKYRHYAPKVPLYIIEEFNE 248

Query: 245 PREALI--------RFGNVPIKNIE----NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
             +  I        + G +  K  E    + +    +     LKE A NLF Y++  +  
Sbjct: 249 IWQNKIDIWLKEGKKVGILVSKENEGLYPDIVKKYVVGSRNNLKEVALNLFFYLRKLEKE 308

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
               I   S P  G+G+AI +RL RAA 
Sbjct: 309 -VDIIISESFPEEGIGLAIMDRLRRAAG 335


>gi|89897678|ref|YP_521165.1| hypothetical protein DSY4932 [Desulfitobacterium hafniense Y51]
 gi|89337126|dbj|BAE86721.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 348

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 112/348 (32%), Positives = 176/348 (50%), Gaps = 30/348 (8%)

Query: 1   MQIMSIT------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           MQ   +T       +  +++A + +  G  +A+PTETVYGL  ++ +  A + ++++K R
Sbjct: 1   MQTKRVTIDAQHPQTEWIKEAAQLIREGQLVALPTETVYGLGANAMDAHACQEIFKVKGR 60

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           P  NPLI H+SD++MVK+      P +   A  FWPGPLTLVL+   T  +  + +  L 
Sbjct: 61  PQDNPLIVHISDLAMVKRLVEEWTPQAALCADKFWPGPLTLVLE--KTAFVPDVVSGGLG 118

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P      +LI+  G P+A PSAN SG+ S T   H+    +  +IPLI+DGG  
Sbjct: 119 TVAIRMPKHPVALELIKEAGVPIAAPSANLSGKPSPTQGIHVWKD-LKGKIPLILDGGPC 177

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
            +G+EST++++  ++   ILRPGG+  E L+  +             P++PGM   HYAP
Sbjct: 178 AVGVESTVLDLT-DEVPTILRPGGITKEQLEEVLGEVAVDRPAPDQAPKAPGMKYRHYAP 236

Query: 233 RSQVRL---------RAIHVNPREALIRFGNVPIKNIENAIISLN---------LSKTGK 274
           + ++ L         R I    R+   R   V I     +   L+         L     
Sbjct: 237 KGELTLLIGERKNVIRKIKDELRKGHSRLKKVGILCTLESAPELHSQLPDLLFVLGSEHH 296

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +E A NL+  +++ D+ G   I    +   GLG AI NRL++A+  R
Sbjct: 297 PEEVAGNLYQGLRLCDEQGMDMILAEGVSEKGLGFAIMNRLQKASGQR 344


>gi|126463159|ref|YP_001044273.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104823|gb|ABN77501.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17029]
          Length = 312

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 135/315 (42%), Positives = 183/315 (58%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  +A+PTETVYGLA D+R+  A+ R++E K RP  NPLI H+ D+ 
Sbjct: 11  AEGIAEAARLLAAGGLVALPTETVYGLAGDARDDRAVARIFEAKGRPQFNPLIVHLPDLG 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL L  T  + PL +A L T   RVP     ++L
Sbjct: 71  AARRYARFDDEALRLAEAFWPGPLTLVLPLGDT-PVSPLVSAGLSTVAIRVPAHPLAQQL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T   H+L   +   I  ++DGG   +G+ESTI  +   +
Sbjct: 130 LRAFGGPLAAPSANPSGRVSPTRPDHVL-DGLSGRIEAVLDGGTCGVGVESTI--LAPGE 186

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LRPGGL  E L+  +   L         P +PG L SHYAP + VRL A    P E
Sbjct: 187 PPLLLRPGGLPAEALEECLGRPL-VAGGSADRPSAPGQLASHYAPEAPVRLGATEARPGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           + I FG +            NLS +G L EAA NLF++++ AD  G   IA + +P  GL
Sbjct: 246 SWIGFGKLGGP--------RNLSPSGDLVEAAANLFHFLREADREG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 297 GRAINDRLRRAAAPR 311


>gi|225028193|ref|ZP_03717385.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353]
 gi|224954505|gb|EEG35714.1| hypothetical protein EUBHAL_02465 [Eubacterium hallii DSM 3353]
          Length = 353

 Score =  343 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 166/343 (48%), Gaps = 27/343 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++     + AL+KA E +  G  +A PTETVYGL  D+ N  A  ++Y  K RP+ NPLI
Sbjct: 10  KVSPEEKAAALKKAGEIIREGGLVAFPTETVYGLGADALNAEASAKIYAAKGRPSDNPLI 69

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+ D+  V + A  V   +  + + FWPGPLT++L+    + +   +T  LKT   R+P
Sbjct: 70  VHIHDVDQVYEIASEVPEAAKKVMEKFWPGPLTVILN--KKSCVPDGTTGGLKTVAIRMP 127

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                +  I   G  +A PSAN SG+ S T   H+    +   IPLI+DGG   IG+EST
Sbjct: 128 SHPLARDFIRESGRMIAAPSANTSGRPSPTLASHVY-EDMQGRIPLILDGGAVGIGIEST 186

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCV-----DETSTPQSPGMLKSHYAPR 233
           I+++  +    ILRPG +  + L+  +  V ++  V      +    ++PGM   HYAP+
Sbjct: 187 IIDMSTDTP-TILRPGYITKDMLEEVLPKVNIDPAVTGRTMKKNVVAKAPGMKYRHYAPK 245

Query: 234 SQVRLRAIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEA 278
            Q+ L     +   A I            + G +         +A I  ++    K +  
Sbjct: 246 GQLTLVEGDRDKVIARINELVKEKEEEGHKVGVIGTDETLDSYHADILRSIGSRQKPETV 305

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           A NL+  ++  DD     +   S    GLG AI NR+ +AA  
Sbjct: 306 AANLYRILREFDDLECDYMYSESFFEQGLGNAIMNRMLKAAGY 348


>gi|84515815|ref|ZP_01003176.1| Sua5/YciO/YrdC family protein [Loktanella vestfoldensis SKA53]
 gi|84510257|gb|EAQ06713.1| Sua5/YciO/YrdC family protein [Loktanella vestfoldensis SKA53]
          Length = 315

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 131/316 (41%), Positives = 171/316 (54%), Gaps = 13/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  L +A E L  G  ++ PTETVYGL  D+RN  A+  ++  K RP+ NPLI H+ DI
Sbjct: 12  DAAGLARAAEILTQGGLVSFPTETVYGLGADARNDRAVAAIFAAKGRPSFNPLIVHLGDI 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +   +    +  +  LA  FWPG LTLVL L     I  L TA L +   RVP     + 
Sbjct: 72  TAANEICDFNDDARCLAAAFWPGALTLVLPLRPQAGISRLVTAGLDSIAVRVPDHKVAQG 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +G P+A PSAN SG+IS T   H+   S+   I  ++DGG   +GLESTIV     
Sbjct: 132 LLAAFGGPVAAPSANASGRISPTTAAHV-RDSLGDRIDALVDGGPCFVGLESTIVACL-- 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LR GG+  E +   +   L    +    P SPG L SHYAP  QVRL A      
Sbjct: 189 GTPTLLRAGGIPSEAIAACLGRPLAIS-ENPDAPVSPGQLLSHYAPIGQVRLNATARQDG 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E ++ FG +           LNLS  G L EAA  LF+ +   D  GA+ IA + IP+HG
Sbjct: 248 EVMLGFGLM--------DADLNLSPAGDLTEAAARLFDCLHQLDAMGAARIAVAPIPDHG 299

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL+RAAAPR
Sbjct: 300 LGRAINDRLKRAAAPR 315


>gi|332800045|ref|YP_004461544.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter sp. Re1]
 gi|332697780|gb|AEE92237.1| Sua5/YciO/YrdC/YwlC family protein [Tepidanaerobacter sp. Re1]
          Length = 347

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 96/329 (29%), Positives = 162/329 (49%), Gaps = 22/329 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KA E +  G  +A PTETVYGL  ++ +    +++Y  K RP  NPLI H+  +S + 
Sbjct: 19  IKKAAEIIKTGGLVAFPTETVYGLGGNALDEHVAKKIYAAKGRPQDNPLIVHIHSLSQLD 78

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +     P  +  L   FWPGPLT++        I   +T  L T   R+P      +LI+
Sbjct: 79  ELVKEIPTRAAVLMDKFWPGPLTIIF--HKKDIIPYSTTGGLDTVAIRMPAHSVALELIK 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN SG+ S    + + +  +  +I +I+DGG + +G+EST++++  EK  
Sbjct: 137 ESGVPIAAPSANISGRPSPACAEDV-AEDLFGKIEMILDGGPTSVGVESTVLDL-SEKVP 194

Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQV------------ 236
            ILRPGG+  E L+  +  V L+  +     P+SPG    HYAP++Q+            
Sbjct: 195 IILRPGGVTKEDLEDVLGCVNLDPGLAPGEKPRSPGQKYRHYAPKAQMTVIEGCMENQVK 254

Query: 237 RLRAIHVNPREALIRFGNVP---IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
            ++ +        ++ G +     +++      +++         + NLF  ++  D  G
Sbjct: 255 TIQELTKQLESGGLKVGIMATAQTRHLYTRGYVISVGDRTAPLTISSNLFTILRKFDRLG 314

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
              I    I   G+G+A+ NRL +AA  +
Sbjct: 315 VDRIFAEGISKDGIGLAVMNRLYKAAGYK 343


>gi|255525830|ref|ZP_05392759.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium carboxidivorans P7]
 gi|255510473|gb|EET86784.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium carboxidivorans P7]
          Length = 350

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 103/335 (30%), Positives = 169/335 (50%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A   +  G  +A PTETVYGL  ++ NP+A+++++E K RP  NP+I H++D 
Sbjct: 14  DRDIIIEAANVIKEGGLVAFPTETVYGLGGNALNPSAVKKIFEAKGRPQDNPVIAHIADF 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +      +  ++  L + FWPGP+TL+L    +  +  ++TA LK    R+P     +
Sbjct: 74  KEINALVKEIPEVAKKLMEKFWPGPMTLILQ--KSEIVPDVTTAGLKCVGIRMPSNIIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I   G P+A PSAN SG+ S T+V+  +   +  +I  II G +  IG+EST+++   
Sbjct: 132 EFIRACGVPIAAPSANISGRPSPTDVERCI-EDMDGKIDYIIGGEMCDIGVESTVIDCTV 190

Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
            + V ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ V++ A
Sbjct: 191 -QPVCILRPGGITLEMLKEVDKDAYIDPAIMKKPDKDFKPKAPGMKYKHYAPKAHVKIVA 249

Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
             +    A I                      K      I ++L     +   + NLF  
Sbjct: 250 GDLQKTIAKINEIVQNYIGENKSVGIMATDETKKYYKNGIVVSLGSREDMISISKNLFET 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD G   I   +    G+G+AI NRL+++A 
Sbjct: 310 LRSFDDKGVDVIVSEAFEEIGVGVAIMNRLQKSAG 344


>gi|329114409|ref|ZP_08243171.1| Putative protein YwlC [Acetobacter pomorum DM001]
 gi|326696485|gb|EGE48164.1| Putative protein YwlC [Acetobacter pomorum DM001]
          Length = 386

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 126/319 (39%), Positives = 179/319 (56%), Gaps = 9/319 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ L+ A   L  G  +A  TETVYGL  D+  P  + R++E K RP  NPLI H +D  
Sbjct: 62  SSGLQTAARILREGGLVAFGTETVYGLGGDATQPQTVARIFEAKNRPRFNPLISHFADAQ 121

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
                 + +PL+  LA +FWPGPLTL+L     + +  L+   L T   RVP G   + L
Sbjct: 122 AAFTQVTANPLAHKLAHMFWPGPLTLILPRAPHSTVSDLAADGLPTLAVRVPKGQTVQAL 181

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++    P+A PSANRSG+IS ++  H+L   +   I  ++D G  ++G+EST++++   +
Sbjct: 182 LKLVQRPIAAPSANRSGRISPSDAAHVL-EELDGRIDAVLDSGPCQVGVESTVLDISNPE 240

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           +  +LRPGG+ +E L+           +  + P SPG + SHYAP   VRL A+ V P E
Sbjct: 241 RPTLLRPGGITLEALQAVCGTIFMPETEVDAAPASPGRMLSHYAPHLPVRLNAVDVAPDE 300

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG----ASSIAFSSIP 303
           AL+ FGN          +S NLS++G L+EAA  LF  ++  D  G       IA   IP
Sbjct: 301 ALLAFGNTQPSGTP---LSWNLSESGNLEEAAARLFTGLRTLDKQGQNLHLRGIAVQPIP 357

Query: 304 NHGLGIAINNRLERAAAPR 322
            HGLG+AI +RL RAAAPR
Sbjct: 358 PHGLGLAIQDRLNRAAAPR 376


>gi|15896136|ref|NP_349485.1| translation factor (SUA5) [Clostridium acetobutylicum ATCC 824]
 gi|15025929|gb|AAK80825.1|AE007785_10 Predicted translation factor (SUA5) [Clostridium acetobutylicum
           ATCC 824]
 gi|325510290|gb|ADZ21926.1| translation factor (SUA5) [Clostridium acetobutylicum EA 2018]
          Length = 350

 Score =  343 bits (880), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 100/335 (29%), Positives = 167/335 (49%), Gaps = 26/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A EF+  G  +  PTETVYGL  ++ +  A ++++E K RP  NPLI H+SD 
Sbjct: 14  DEQILKEAGEFIKNGKLVVFPTETVYGLGANAEDGEATKKIFEAKGRPQDNPLIIHISDF 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V K   ++   +  L + FWPGP+TL+++    + I  +++A L +   R+P     +
Sbjct: 74  EDVDKVVRNISDSARKLMREFWPGPMTLIME--KKSIISDVTSAGLTSVGVRMPSDKIAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI+  G  +A PSAN SG+ S T+V+  +   +  ++  II G   + GLEST+++   
Sbjct: 132 KLIKFSGVSIAAPSANLSGKPSPTDVERCI-EDLNGKVDYIIGGNKCEYGLESTVIDCTV 190

Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
              V ILRPG + +E +++      I   +    + +  P++PGM   HYAP++ V++  
Sbjct: 191 N-PVCILRPGAITLEMVRKVDEKAYIDPAIMAKPEPSLKPKAPGMKYKHYAPKAPVKIID 249

Query: 241 IHVNPREALI------------RFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNY 285
             +      I            + G +     +N     I ++L     +     NLF  
Sbjct: 250 GDLKKTIEKINEMVQNYIDDNKKVGIMATDETKNNYRNAIVISLGSRKDIYSIGRNLFET 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD G   I   +    G G+AI NRL ++A 
Sbjct: 310 LRDFDDCGVDVILSEAFDEEGFGVAIMNRLNKSAG 344


>gi|319784740|ref|YP_004144216.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170628|gb|ADV14166.1| Sua5/YciO/YrdC/YwlC family protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 355

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 153/317 (48%), Positives = 200/317 (63%), Gaps = 4/317 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL +A   L  G  +AIPTETVYGLA D+ N   + R++E K RP  NPLI HV+D++M
Sbjct: 40  EALERALALLREGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVADMAM 99

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            ++ A  DPLS  LA+ FWPGPLTLVL       IHPL TA L T   R+P GF   LI 
Sbjct: 100 AERLALFDPLSKKLARAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGGDLIA 159

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN SG+IS T  + + ++ +   I L++DGG + +GLESTI+  + E ++
Sbjct: 160 RLGRPLAAPSANSSGRISATTAQAV-AADLGARIKLVVDGGATPVGLESTILKAEGE-RM 217

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           R+LRPGG+  E      ++ +E     T++ ++PGML SHYAP + +RL A  V   EAL
Sbjct: 218 RLLRPGGIAAEE--IEAAIGMELLRGGTASIEAPGMLASHYAPGAAMRLNAGTVGEGEAL 275

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG+        A   LNLS+TG L+EAA NLF YM+  D SGA +IA   IP  GLG 
Sbjct: 276 LGFGSQRADGWRRAEAFLNLSETGDLREAASNLFAYMQALDRSGARTIAVEPIPCDGLGE 335

Query: 310 AINNRLERAAAPRNQSQ 326
           AIN+RL RAAAPR+ +Q
Sbjct: 336 AINDRLSRAAAPRDITQ 352


>gi|297717892|gb|ADI50089.1| hypothetical protein [Candidatus Odyssella thessalonicensis L13]
          Length = 310

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 127/320 (39%), Positives = 181/320 (56%), Gaps = 14/320 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  ++      L +ACE L +G  +AIPTETVYGLA D+ N  A+ ++Y IK+RP  NPL
Sbjct: 1   MVTIASFSPEVLSQACELLSSGDVVAIPTETVYGLAADATNDKAVAKIYAIKQRPEFNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I H       K +   D  +  LA  FWPGP+T VL     + I  L+++ L+T   R+P
Sbjct: 61  IIHCHSAQQAKSYVQFDKRAEKLADAFWPGPITFVLKRYPDSAISFLASSGLETLAVRIP 120

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + LI+ Y  PLA PSAN S  IS T+   +  +S+   +PLIIDGG +++G+EST
Sbjct: 121 AHPVAQALIKAYSKPLAAPSANLSQTISPTSAIDV-QASLGNRVPLIIDGGQTRVGVEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+++  E    ILRPGG+ +E ++  I       +   +  ++PGM+  HYAP   +RL 
Sbjct: 180 IIDLT-EAIPHILRPGGISVEQIQAVIGTVD---LSRRAGIKAPGMMARHYAPSVPMRLN 235

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A      E  + FG++            NLS +G L+EAA NLF  M++ D    + IA 
Sbjct: 236 AAAPLKGELFLGFGSM--------DCDYNLSPSGNLEEAAANLFRMMRLMDRQNIAGIAV 287

Query: 300 SSIPNHGLGIAINNRLERAA 319
           + IP HGLG+AIN+RL RAA
Sbjct: 288 APIPKHGLGLAINDRLMRAA 307


>gi|197302164|ref|ZP_03167223.1| hypothetical protein RUMLAC_00890 [Ruminococcus lactaris ATCC
           29176]
 gi|197298595|gb|EDY33136.1| hypothetical protein RUMLAC_00890 [Ruminococcus lactaris ATCC
           29176]
          Length = 508

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 105/343 (30%), Positives = 158/343 (46%), Gaps = 25/343 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   L  G  +A PTETVYGL  D+    A ++ Y  K RP+ NPLI H++D 
Sbjct: 14  DPEVIEEAGNILKNGGLVAFPTETVYGLGADALKEEAAKKTYAAKGRPSDNPLIVHIADY 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             +K  A ++   +  LA  FWPGPLT++ +   +  +   +T  L T   R+P      
Sbjct: 74  EDLKAVAVNIPAKTDALAAHFWPGPLTMIFE--KSEIVPYGTTGGLDTVAVRMPSDPVAA 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            +I   G  ++ PSAN SG+ S T  +H+ S  +  +I +I+D G   IGLESTI+++  
Sbjct: 132 AVIRAAGGFVSAPSANTSGRPSPTTAQHV-SEDLDGKIDMILDSGSVDIGLESTILDMTV 190

Query: 186 EKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           E  + ILRPG +  +  +  I      E     +    P++PGM   HYAP++++ +   
Sbjct: 191 EPPM-ILRPGAITADMFEEVIGPVSVDETILGSESNKAPKAPGMKYRHYAPKAKLIIAEG 249

Query: 242 HVNPREALI------------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYM 286
            +      I            R G +            I  N+      K  A NL+  +
Sbjct: 250 DIREEVLAIRQLAYAAHRQGERVGIIATGETLPFYKYGIVKNIGTRENEKTIARNLYRVL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQRIV 329
           +  DD     I   S    G+G AI NRLE+AA     S   V
Sbjct: 310 REFDDEKVDIIYSESFAMQGIGSAIMNRLEKAAGHLRISASAV 352


>gi|251799799|ref|YP_003014530.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2]
 gi|247547425|gb|ACT04444.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. JDR-2]
          Length = 356

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 114/333 (34%), Positives = 165/333 (49%), Gaps = 24/333 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L +A   L  G  +A PTETVYGL  D+RN TA+  +++ K RP+ NPLI H++D + +
Sbjct: 21  QLEEAASLLRDGELVAFPTETVYGLGADARNTTAVEGIFKAKGRPSDNPLIVHIADENQL 80

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLI 128
            +       L+  L K  WPGPLT+VL +  T  + PL TA L T   R+P       LI
Sbjct: 81  AELVLPYPELAGRLMKELWPGPLTIVLPVR-TGAVSPLVTAGLTTVGIRMPDHPAALALI 139

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A PSANRSG+ S T   H+L   +  +I  I+DGG + +GLEST++ +     
Sbjct: 140 RQSGCPVAAPSANRSGRPSPTLAAHVL-EDLAGKISGIVDGGATGVGLESTVIELPDSNT 198

Query: 189 VRILRPGGLEIETL-----KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           +RILRPGG+  E L     +  I        D T  P+SPGM  +HYAP   +R+     
Sbjct: 199 IRILRPGGITAEQLRSAAPEAVIDAPAAANPDVTEAPRSPGMKYAHYAPEGDLRIVLGEP 258

Query: 244 NPREALI------------RFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKI 288
               + I            + G +         +A + L+       ++AA NL+  ++ 
Sbjct: 259 AKAVSYIQEQLSLSTTTSMKTGVLTFDERAAAYDADLILSYGSELHPEQAAHNLYAALRR 318

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            D  G   I        G+G+A+ NRL +AA  
Sbjct: 319 FDSEGIQLIWAEGCSEEGIGLALMNRLAKAAGH 351


>gi|225378684|ref|ZP_03755905.1| hypothetical protein ROSEINA2194_04354 [Roseburia inulinivorans DSM
           16841]
 gi|225209521|gb|EEG91875.1| hypothetical protein ROSEINA2194_04354 [Roseburia inulinivorans DSM
           16841]
          Length = 357

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D N +++A E +  G  +A PTETVYGL  D+ +P A +++Y  K RP+ NPLI H+  
Sbjct: 20  IDENEMKEAAELIRKGELVAFPTETVYGLGADALHPEASKKIYAAKGRPSDNPLIVHICK 79

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
              +   A  V   +  LA  FWPGPLT+++       +   +T  ++T   R+P     
Sbjct: 80  FEELVSIAKEVPAQAEKLADAFWPGPLTMIV--WKNEKVPYETTGGMETVAIRMPKHPVA 137

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLIE  G  +A PSAN SG+ S T   H+    +  +IP+I+DGG   IG+ESTI+++ 
Sbjct: 138 LKLIEESGCLIAAPSANTSGKPSPTEASHVKLD-LDGKIPMILDGGPVGIGIESTIIDLT 196

Query: 185 CEKKVRILRPGGLEIETLKRAISVELE-----YCVDETSTPQSPGMLKSHYAPRSQVRL- 238
            +  + ILRPG +  E L+  +  E++        D  + P++PGM   HYAP++ + L 
Sbjct: 197 EDTPM-ILRPGYITKEMLEEVLGEEVKIDPGIIASDSLTKPKAPGMKYKHYAPKADLVLV 255

Query: 239 -----------RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFN 284
                        +    ++  ++ G +     ++   A I +++         A +L+ 
Sbjct: 256 DGEAENVVKKINELVAEKQKNGLKVGVIATDETKDQYQADIVVSIGARADEDAIAQHLYK 315

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  DD    +I   S     +G AI NRL +AA  
Sbjct: 316 ILREFDDWNVDAIYSESFATPRIGQAIMNRLLKAAGH 352


>gi|254471762|ref|ZP_05085163.1| Sua5/YciO/YrdC/YwlC family protein [Pseudovibrio sp. JE062]
 gi|211958964|gb|EEA94163.1| Sua5/YciO/YrdC/YwlC family protein [Pseudovibrio sp. JE062]
          Length = 329

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 138/319 (43%), Positives = 188/319 (58%), Gaps = 3/319 (0%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D+   +  C+ L  G  +AIPTETVYGLA D+ N  A   +YE K RP+ NPLI H+ 
Sbjct: 13  LEDTQIFQDICDALSDGKLVAIPTETVYGLAADATNGKACAGIYEAKGRPSFNPLISHID 72

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
            +   + HA  D  +L LA+ FWPGPLTLVL  L T+ +  L+ A L+T   RVP     
Sbjct: 73  SLEAAQTHAFFDDRALKLAEAFWPGPLTLVLPKLPTSPVSDLAVAGLETIALRVPRSAVM 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L +  G PLA PSAN SG+IS T  + +++  +   +  IID G + +G+ESTIV++ 
Sbjct: 133 RALCKRTGLPLAAPSANLSGRISGTTAEDVIND-LKDHLSYIIDSGATPVGVESTIVSLV 191

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            ++   +LRPGGL  E ++  +  +L     + S P +PGML SHYAP S +RL A  V 
Sbjct: 192 GDRP-TLLRPGGLARENVEAVLGEKLVRAGTDDSAPMAPGMLTSHYAPNSHIRLNAEEVT 250

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             EALI FG+V     + A   + LS +  L EAA  LF  ++ AD      IA   IP+
Sbjct: 251 AGEALITFGSVLPDGSDKAAKLVPLSDSEDLTEAAARLFTALRQADLGENGKIAVMPIPH 310

Query: 305 HGLGIAINNRLERAAAPRN 323
           HGLG AIN+RL RAAAPR+
Sbjct: 311 HGLGEAINDRLARAAAPRD 329


>gi|293553330|ref|ZP_06673966.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039]
 gi|291602554|gb|EFF32770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1039]
          Length = 341

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 111/338 (32%), Positives = 172/338 (50%), Gaps = 21/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPL
Sbjct: 1   METKR-YDETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+
Sbjct: 60  IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+ES
Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177

Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P +
Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237

Query: 235 QVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
           +V +             +   IR G +    I + +     ++ +     ++ AA  LF 
Sbjct: 238 RVLMVRDGDWSTAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|254504637|ref|ZP_05116788.1| Sua5/YciO/YrdC/YwlC family protein, putative [Labrenzia alexandrii
           DFL-11]
 gi|222440708|gb|EEE47387.1| Sua5/YciO/YrdC/YwlC family protein, putative [Labrenzia alexandrii
           DFL-11]
          Length = 331

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 136/314 (43%), Positives = 190/314 (60%), Gaps = 5/314 (1%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
              C  L  G  +A+PTETVYGLA D+ + TA  R+++ K RP+ NPLI H+ ++   + 
Sbjct: 20  DAVCRSLIDGGLVAVPTETVYGLAADATSGTACARIFQAKGRPSFNPLISHLPNLEAARH 79

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
           H   D  +L LA+ FWPGPLTLV+     ++I  L+TA L T   RVP     + L E  
Sbjct: 80  HGVFDDRALKLAEAFWPGPLTLVVPKTKASEISDLATAGLSTVALRVPSGPIMRYLSEIT 139

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PLA PSANRSG+IS T  + ++ + +   +  +ID G  ++G+ESTI+ +  +++V +
Sbjct: 140 GRPLAAPSANRSGKISPTRAEDVI-ADLGDALDFVIDAGPCEVGIESTIIGLT-DERVTL 197

Query: 192 LRPGGLEIETLKRAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           LRPGGL  E ++  +  +++     +    P +PGML SHYAP +Q+RL A  V   EAL
Sbjct: 198 LRPGGLAREAIESVLQTKVQTAASNSQPEAPAAPGMLTSHYAPNAQMRLHARAVARDEAL 257

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG  PI+  + A    NLS +G L EAA  LF  M+  D SGA +I    IPN GLG 
Sbjct: 258 LSFGADPIEGRDEAFAETNLSPSGDLVEAAARLFQAMRTLDSSGAKTIQVQDIPNTGLGE 317

Query: 310 AINNRLERAAAPRN 323
           AIN+RL RAAAPR+
Sbjct: 318 AINDRLRRAAAPRD 331


>gi|83945388|ref|ZP_00957736.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851222|gb|EAP89079.1| Sua5/YciO/YrdC family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 327

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 133/321 (41%), Positives = 176/321 (54%), Gaps = 6/321 (1%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+S TD  AL +A   L AG  +A+PTETVYGLA D+ N  A+  +YE K RP+ NPLIC
Sbjct: 12  ILSATDPAALEEAARLLKAGGCVALPTETVYGLACDATNADAVAGVYEAKGRPSFNPLIC 71

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           HV  +   +    +D     LA  FWPGPLTLV    + + +  L+ A L +   R+P  
Sbjct: 72  HVDTVERARALIDLDETGEQLADAFWPGPLTLVASKRAPSPVSDLAAAGLDSLAVRLPRS 131

Query: 123 FT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + L+     PLA PSAN SG IS T  +H+   S+   I LI+DGG   +G+ESTIV
Sbjct: 132 EALRALVSRLDAPLAAPSANASGTISPTTAQHV-KDSLNGRIHLILDGGACPVGVESTIV 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           ++    +  +LRPGG+  E L+              + P +PG L SHYAP + VRL A 
Sbjct: 191 SLLEPGRPTLLRPGGVAREQLETVCGALGRAGAANQAAPTAPGQLTSHYAPNASVRLNAT 250

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                E+ + FG  P     + I+  NLS  G L EAA NLF  ++  D +    IA + 
Sbjct: 251 APLAGESYLGFGAQPES---DDIVFFNLSPKGDLVEAATNLFTALRWLDSAS-DRIAVAP 306

Query: 302 IPNHGLGIAINNRLERAAAPR 322
           IP  GLG AIN+RL RAAA R
Sbjct: 307 IPETGLGEAINDRLRRAAAER 327


>gi|217967196|ref|YP_002352702.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724]
 gi|217336295|gb|ACK42088.1| Sua5/YciO/YrdC/YwlC family protein [Dictyoglomus turgidum DSM 6724]
          Length = 338

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 108/331 (32%), Positives = 162/331 (48%), Gaps = 21/331 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA + L+ G  +A PTETVYGL  D+ NP A+++++  K RP  NP+I HV   
Sbjct: 13  DIEVLKKAAQVLEKGGLVAFPTETVYGLGADALNPEAVKKIFIAKGRPPDNPIIVHVGKK 72

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             V      V  ++  L + FWPGPLTL+     +  +  + TA       R P      
Sbjct: 73  EQVYSLTENVPSIAEKLMEEFWPGPLTLIF--YKSNLVDDVVTAGSPKVGIRQPMNKVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL+E +G P+A PSAN SG+ S T  +H++   +  +I +IIDGG    G+EST++++  
Sbjct: 131 KLLEVFGKPIAAPSANVSGRPSPTKAEHVI-EDLEDKIDIIIDGGDVNFGVESTVLDITT 189

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETST--PQSPGMLKSHYAPRSQVRLRAIHV 243
           +  + I RPG    E ++R I  ++     E S     SPG+   HYAP+  + +     
Sbjct: 190 DTPI-IYRPGACPKEEIERVIGKKVMVWNKEKSKEDVPSPGLKYRHYAPKVPLYIVEEFN 248

Query: 244 NPREALI--------RFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADD 291
              +  I        + G +  K  EN     I    +     L E A NLF Y++  + 
Sbjct: 249 EIWQNKINDWLKEGKKVGVLVSKENENLYSDKIKKYVIGSRKNLTEIALNLFFYLRKLEK 308

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                I   S P  GLG+A+ +RL RAA  +
Sbjct: 309 E-VDIIISESFPEEGLGLAVMDRLRRAAGEK 338


>gi|227821231|ref|YP_002825201.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234]
 gi|227340230|gb|ACP24448.1| hypothetical protein NGR_c06550 [Sinorhizobium fredii NGR234]
          Length = 337

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 153/323 (47%), Positives = 206/323 (63%), Gaps = 5/323 (1%)

Query: 1   MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M I    D  A +  A E L  G  IA+PTETVYGLA D+ N  A+ ++++IK+RP  NP
Sbjct: 1   MIIDVAADPAAGITSAVEALGRGDVIAVPTETVYGLAADATNEAAVSQIFDIKRRPGFNP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LICH SD+ MV + A++DP+SL LA+ FWPGP+TLVL+      +  ++TA L T   R+
Sbjct: 61  LICHCSDLEMVSEFATLDPVSLRLAERFWPGPMTLVLNSNPGR-LPSVTTAGLTTVAIRI 119

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P GF+  LI +YG PLA PSAN SG++S T   H+  S     +PLI+DGG +KIG+EST
Sbjct: 120 PMGFSNGLIRSYGGPLAAPSANISGRVSATTAAHV-ESEFGDGVPLILDGGPTKIGVEST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+ V+    + +LRPGGL IE ++ A  +++    +      +PGML SHYAPR+ VRL 
Sbjct: 179 ILRVRENG-IELLRPGGLPIELVEHAAGLQVS-APNLFRKVLAPGMLTSHYAPRAMVRLN 236

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A  V P E L++FG+  +          NLS  G L+E A  L+  +K ADD+GA SIA 
Sbjct: 237 ATGVGPGETLLKFGDAIVPGEGACARVFNLSPEGSLEEFAAKLYATLKEADDAGAESIAI 296

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
             IP+ GLG+AIN+RL RAAAPR
Sbjct: 297 VPIPDEGLGLAINDRLRRAAAPR 319


>gi|254512404|ref|ZP_05124471.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium KLH11]
 gi|221536115|gb|EEE39103.1| Sua5/YciO/YrdC family protein [Rhodobacteraceae bacterium KLH11]
          Length = 315

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 129/317 (40%), Positives = 174/317 (54%), Gaps = 14/317 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A + L  GL +A PTETVYGL  D+RN  A+  +Y+ K RP+ NPLI HV   
Sbjct: 12  DPAGIARAADLLRQGLLVAFPTETVYGLGGDARNGNAVAAIYQAKGRPSFNPLIAHVDSA 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
              ++       +  LA  FWPGPLTLVL L     +  L TA L T   RVP     + 
Sbjct: 72  QTAQRFVEWSDQAEQLATAFWPGPLTLVLPLREGHGMSSLVTAGLDTLAVRVPAHPTARA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +  P+A PSAN SGQIS T   H+  + +   I  ++D G   +GLESTIV +  +
Sbjct: 132 LLAAFDGPVAAPSANPSGQISPTTAAHV-RAGLGGRIAAVLDDGPCGVGLESTIVGLTGD 190

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             +  LRPGG+ +E ++  +  +L +         +PG ++SHYAP + VRL A      
Sbjct: 191 PAL--LRPGGVALEQIEDTLQTKLHHH-QSGDLLTAPGQMQSHYAPDAPVRLNARSRRGD 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E L+ FG V           LNLS++G L EAA NLF  +   + +G   IA S IP+HG
Sbjct: 248 EVLLGFGPVACD--------LNLSESGDLPEAASNLFAALHDLNSTG-RPIAVSPIPDHG 298

Query: 307 LGIAINNRLERAAAPRN 323
           LG AIN+RL RAAAPR 
Sbjct: 299 LGAAINDRLRRAAAPRG 315


>gi|323339963|ref|ZP_08080230.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus ruminis ATCC
           25644]
 gi|323092605|gb|EFZ35210.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus ruminis ATCC
           25644]
          Length = 339

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 175/336 (52%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I  I  ++ + KA   L  G  IA PTETVYGL  D+ N  A++R+Y  K RP+ NPL
Sbjct: 1   MLITKIYTTDEIEKAANELRLGELIAFPTETVYGLGADATNEQAVKRVYLAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VS   MV+++   +   ++ L   FWPGPLT++L +     +    T  L+TA FR+
Sbjct: 61  IVTVSSRKMVEEYVESLPERAVKLMDAFWPGPLTMILKIKEGA-LSKAVTGGLETAAFRM 119

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      KLIE+ G P+  PSAN SG+ S T  +H+    +   I  I+D G +++G+ES
Sbjct: 120 PQNKATLKLIESAGVPIVGPSANSSGKPSPTTAQHVY-HDLEGRIAGILDDGPTQVGVES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E  V ILRPG + +E L+  +   +   ++ V     P++PGM   HYAP +Q
Sbjct: 179 TIIDLSSEHPV-ILRPGAVTVEQLEEVLKETVLSDKHKVGMKEVPKAPGMKYKHYAPDAQ 237

Query: 236 VRLRAIHVNPREALI------RFGNVPIKN-IENAII--SLNLSKTGKLKEAAFNLFNYM 286
           V +       +  L       R G +     ++NA +   L+ S    + +A+  LF  +
Sbjct: 238 VLIVKAGDWDKALLWRKNKQERVGVMAFNEVLKNADLPKKLSYSLGDTVFDASRRLFAGL 297

Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  D +     I  + +   GLG A  NRL+++A  
Sbjct: 298 RYFDSEEKVDFILCAGVKEAGLGEAYMNRLKKSAGN 333


>gi|116250734|ref|YP_766572.1| Sua5 family protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255382|emb|CAK06457.1| putative Sua5 family protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 324

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 163/303 (53%), Positives = 204/303 (67%), Gaps = 2/303 (0%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  IAIPTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M ++HA  DPLS
Sbjct: 24  NGFAIAIPTETVYGLAADATNPLAIARIYETKGRPRFNPLICHMADLAMAEEHAEFDPLS 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             LAK FWPGPLTLVL L   + IH L+TA L +   RVP GF   LI  +G PLA PSA
Sbjct: 84  RALAKAFWPGPLTLVLPLKRESPIHSLATAGLDSVGIRVPKGFAGALIGAFGRPLAAPSA 143

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG +S T+  H+  + +  +IPLI+D G S +G+ESTIV  +   ++R+LRPGGL   
Sbjct: 144 NTSGGVSATSAAHV-EADLGAKIPLILDAGPSAVGVESTIVKAEG-GRLRLLRPGGLAAR 201

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
            ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG+  +   
Sbjct: 202 EIERIAGQPLLRAKAASAAIEAPGMLASHYAPGASVRLNATAVEPGEALIAFGSAAVSGA 261

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++A I L+LS  G L EAA NLF+YMK AD SGA SIAFS IP  GLG AIN+RL+RAAA
Sbjct: 262 DSARIVLDLSPHGDLAEAAANLFDYMKRADASGARSIAFSPIPEEGLGEAINDRLQRAAA 321

Query: 321 PRN 323
           PR+
Sbjct: 322 PRD 324


>gi|257882294|ref|ZP_05661947.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502]
 gi|293563063|ref|ZP_06677529.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162]
 gi|293567647|ref|ZP_06678990.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071]
 gi|294623633|ref|ZP_06702471.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317]
 gi|314937736|ref|ZP_07845058.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04]
 gi|314942366|ref|ZP_07849213.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C]
 gi|314947684|ref|ZP_07851093.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082]
 gi|314952115|ref|ZP_07855134.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A]
 gi|314992374|ref|ZP_07857806.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B]
 gi|314997439|ref|ZP_07862386.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01]
 gi|257817952|gb|EEV45280.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,502]
 gi|291589582|gb|EFF21387.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1071]
 gi|291596959|gb|EFF28172.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium U0317]
 gi|291604977|gb|EFF34445.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1162]
 gi|313588448|gb|EFR67293.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a01]
 gi|313593099|gb|EFR71944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133B]
 gi|313595734|gb|EFR74579.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133A]
 gi|313598879|gb|EFR77724.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133C]
 gi|313642874|gb|EFS07454.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0133a04]
 gi|313645925|gb|EFS10505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX0082]
          Length = 341

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 111/338 (32%), Positives = 172/338 (50%), Gaps = 21/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPL
Sbjct: 1   METKR-YDETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+
Sbjct: 60  IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRI 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+ES
Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177

Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P +
Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237

Query: 235 QVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
           +V +             +   IR G +    I + +     ++ +     ++ AA  LF 
Sbjct: 238 RVLMVRDGDWSTAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|293378552|ref|ZP_06624715.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium PC4.1]
 gi|292642881|gb|EFF61028.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium PC4.1]
          Length = 341

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 110/338 (32%), Positives = 172/338 (50%), Gaps = 21/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A + L AG  +A PTETVYGL  ++  P  +++++ +K RP  NPL
Sbjct: 1   METKR-YDETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+
Sbjct: 60  IVHVASFEQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+ES
Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIDDGATRIGVES 177

Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P +
Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237

Query: 235 QVRLR------AIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
           +V +             +   IR G +    I + +     ++ +     ++ AA  LF 
Sbjct: 238 RVLMVREGDWSTAVQWAKNKKIRVGVIASPEISDQVRTDTAAVYMYNDNSVEAAAKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|125975078|ref|YP_001038988.1| translation factor SUA5 [Clostridium thermocellum ATCC 27405]
 gi|281418504|ref|ZP_06249523.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum JW20]
 gi|125715303|gb|ABN53795.1| translation factor SUA5 [Clostridium thermocellum ATCC 27405]
 gi|281407588|gb|EFB37847.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum JW20]
          Length = 351

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 115/346 (33%), Positives = 171/346 (49%), Gaps = 30/346 (8%)

Query: 2   QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D+  ++ A E L  G  +A PTETVYGL  D+ +  A+++++E K RP+ 
Sbjct: 4   EILKIQSDNIDNEKIKYAAEVLRGGGLVAFPTETVYGLGADALDENAVKKIFEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++    V    A+V P +  L   FWPGPLTLVL+   +  I  + TA L T  
Sbjct: 64  NPLIVHIAGKEDVYGLAANVPPKAQILMDRFWPGPLTLVLE--KSDKIPSVITAGLSTVG 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P       LI   G P+A PSAN SG+ S T  KH++   +   + +IIDGG + IG
Sbjct: 122 LRAPSHPIALALIREAGIPIAAPSANLSGRPSPTVPKHVI-DDLYGRVDVIIDGGNANIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI-----SVELEYCVDETSTPQSPGMLKSHY 230
           +EST+++V  +  V ILRPGG+  E LK  +        L         P++PGM  +HY
Sbjct: 181 VESTVLDVTADVPV-ILRPGGVSFEQLKDVLKNVTMDPSLMKKPAGDFVPKAPGMKYTHY 239

Query: 231 APRSQVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKL 275
           +P++ V +           I                      K    ++ S+ L    + 
Sbjct: 240 SPKADVIVVEGEPEKVAEKINSLIAEYQSKNIPVGVLATEQTKEFYKSVPSITLGDRLEP 299

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  A NLF   +  DD G   I   +I N G+G+A+ NR+++AA  
Sbjct: 300 ETIAANLFKAFRDFDDIGIKVIFAEAIDNQGIGLAVMNRMKKAAGY 345


>gi|328957993|ref|YP_004375379.1| putative ribosome maturation factor; RNA binding protein
           [Carnobacterium sp. 17-4]
 gi|328674317|gb|AEB30363.1| putative ribosome maturation factor; RNA binding protein
           [Carnobacterium sp. 17-4]
          Length = 329

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 101/325 (31%), Positives = 163/325 (50%), Gaps = 19/325 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA + +  G  I+ PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS I  V+++
Sbjct: 3   KAAQKIQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVSTIEEVEQY 62

Query: 74  A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
              V  ++  L + FWPGPLTL+  +       P  TA L +   R+P    T +LI   
Sbjct: 63  VQEVPEVAKKLMQTFWPGPLTLIFKVKDHV-FAPTVTAGLASVAMRMPDNEVTLQLIRKS 121

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL  PSAN SG+ S T   H+    +  +I  ++D G + +GLEST++++   K   I
Sbjct: 122 GKPLVGPSANTSGKPSPTTADHVY-HDLKGKIAGVLDDGDTGLGLESTVLDITDPKLPTI 180

Query: 192 LRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           LRPG    E L++ I       + +     P++PGM   HY+P   V +        +  
Sbjct: 181 LRPGATTKEALEKVIGTVFVDRHLISNDEVPKAPGMKYKHYSPNEPVVIVVGESEIWQKA 240

Query: 250 I--------RFGNVPIKNIENAI-----ISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           I        + G +  +++ N        + +L +   + +A+  L++ ++  + + A+ 
Sbjct: 241 IKTYQKQGEKIGLLANQDLLNQFQDTVTATYSLGENKNIHDASRRLYSGLRYFETTDATL 300

Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321
           I   +    GLG A  NRL++AA  
Sbjct: 301 ILAEAHEQKGLGEAYMNRLQKAAGN 325


>gi|325291370|ref|YP_004267551.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271]
 gi|324966771|gb|ADY57550.1| translation factor SUA5 [Syntrophobotulus glycolicus DSM 8271]
          Length = 368

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 116/341 (34%), Positives = 168/341 (49%), Gaps = 31/341 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N L++A + + AG  +A PTETVYGL  D+ NP A   ++++K RPA NPLI HV+D+ 
Sbjct: 26  ENELKEAAQLIKAGNLVAFPTETVYGLGADALNPRACAEIFKVKGRPADNPLILHVADLE 85

Query: 69  MVKKHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             ++  S       + A  FWPGPLT+VL       I  + +  LKT  FR+P       
Sbjct: 86  EARRLTSFWNDKAEICAGAFWPGPLTMVLP--KAEFIPDVISGGLKTVAFRMPDHPVALS 143

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PLA PSAN SG+ S T+ +H+    +   IPL+ID G   IGLEST++++  E
Sbjct: 144 LIRLSGCPLAAPSANLSGKPSPTDGEHVW-QDLQGRIPLMIDAGKCAIGLESTVLDLSEE 202

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETST----PQSPGMLKSHYAPRSQVRLRAI 241
             V ILRPGG+  E L+  +  VE++  + E +T    P++PGM   HYAP  +V L + 
Sbjct: 203 IPV-ILRPGGITREQLEEVLGKVEVDPFLTEMNTENIVPKAPGMKYRHYAPEGEVHLLSG 261

Query: 242 HVNPREALIRFGNVPIKNIENAI--------------------ISLNLSKTGKLKEAAFN 281
             +     IR G                               +   +       +AA  
Sbjct: 262 DGSEVLQEIREGLAEYAATPKKALLCLRETEEMLQDEEKKKLELIFVMGARTNPGKAARR 321

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           L+  +++ D      I    +P  G+G+A  NRL +AA  R
Sbjct: 322 LYEGLRLCDRQNMEMIFVEGMPAEGIGLAFMNRLRKAAGKR 362


>gi|307941534|ref|ZP_07656889.1| protein SUA5 [Roseibium sp. TrichSKD4]
 gi|307775142|gb|EFO34348.1| protein SUA5 [Roseibium sp. TrichSKD4]
          Length = 329

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 134/317 (42%), Positives = 180/317 (56%), Gaps = 4/317 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  L      L AG  + +PTETVYGLA D+ NP A  R++E K RP  NPLI H   +
Sbjct: 15  DTAMLSTVSTALKAGDLVGVPTETVYGLAADASNPEACARIFEAKGRPQFNPLISHADTL 74

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
              ++H   +  +  LA  FWPGPLTLVL    T+ I  L+TA L +   RVP     + 
Sbjct: 75  ETARQHGVFNAKADRLAAAFWPGPLTLVLPKRETSSISDLATAGLDSVALRVPAGAVMRA 134

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L    G PLA PSAN SG+IS T    ++ + +   +  +ID G   +G+ESTI+    +
Sbjct: 135 LAAETGCPLAAPSANLSGKISATTADDVI-ADLGSSVAHVIDAGPCPVGVESTIIACI-D 192

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNP 245
            +VR+LRPGG+  E ++  +   L+       T PQ+PGML SHYAP ++VRL A HV  
Sbjct: 193 DQVRLLRPGGVPAEDIECVLGHPLDVVRAANDTNPQAPGMLTSHYAPGARVRLEADHVEA 252

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EAL+ FG   +   + A    NLS+ G L+EAA  LF  ++  D S A ++    IP  
Sbjct: 253 GEALLAFGPASLPGADTANAVFNLSENGDLREAATRLFAGLRALDASKAQTVCVQHIPQE 312

Query: 306 GLGIAINNRLERAAAPR 322
           GLG AIN+RL RAAAPR
Sbjct: 313 GLGAAINDRLRRAAAPR 329


>gi|315283702|ref|ZP_07871810.1| protein Sua5 [Listeria marthii FSL S4-120]
 gi|313612655|gb|EFR86689.1| protein Sua5 [Listeria marthii FSL S4-120]
          Length = 315

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 112/317 (35%), Positives = 164/317 (51%), Gaps = 19/317 (5%)

Query: 26  AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLA 84
           A PTETVYGL  D+ N  AI+++Y  K RP+ NPLI H+     +    AS  P +L L 
Sbjct: 2   AFPTETVYGLGADATNQAAIQKIYAAKGRPSDNPLIVHIGRREQMDSFVASYPPKALQLM 61

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRS 143
           + FWPGPLT++L L   + +    +A L T   R+P      +LI+    P+A PSANRS
Sbjct: 62  EKFWPGPLTVILPLKKDS-LAANVSAGLSTVGVRMPEHPVSLELIKAANIPVAAPSANRS 120

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+ S T   H++   +  +I  IIDGG + +GLEST+++   E  + ILRPGG+  E ++
Sbjct: 121 GKPSPTTANHVI-EDLDGKIAGIIDGGPTGVGLESTVIDCSLEMPI-ILRPGGITKEQIE 178

Query: 204 RAISVELEY--CVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI--------RFG 253
           R I           ET  P++PGM  +HYAP++ V L        ++ I        + G
Sbjct: 179 RVIGPVDSSSNSTTETEKPKAPGMKYTHYAPKAPVYLIEGSTEFWQSEINKAEAAHKKIG 238

Query: 254 NVPIKNIENAIISLNL----SKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
            +  K + + + +  +         L E A NL+N ++  D +    I     P   LG 
Sbjct: 239 ILATKELTDKLTTSAVIQTTGSIDALDEVATNLYNGLRAFDHADVELIFAEVYPETELGA 298

Query: 310 AINNRLERAAAPRNQSQ 326
           AI NRLE+AA  R  S+
Sbjct: 299 AIMNRLEKAAGNRRISE 315


>gi|110680589|ref|YP_683596.1| Sua5/YciO/YrdC family protein [Roseobacter denitrificans OCh 114]
 gi|109456705|gb|ABG32910.1| Sua5/YciO/YrdC family protein [Roseobacter denitrificans OCh 114]
          Length = 314

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 173/315 (54%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A + L  G  +A PTETVYGL  D+RN  A+  ++E K RP+ NPLI HV D +
Sbjct: 13  PDGIAQAADLLRTGALVAFPTETVYGLGADARNGRAVATVFEAKGRPSFNPLIVHVHDAT 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
             ++       +  LA  FWPGP++LVL L     +  L TA L T   RVP     + L
Sbjct: 73  QARRFCHWSDSAEKLATAFWPGPVSLVLPLREEHGLSSLVTAGLPTVALRVPAHPAARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +  P+A PSAN SG+IS T  +H+ +  +  ++  I+D G   +GLESTIV +  + 
Sbjct: 133 LRAFDGPVAAPSANPSGKISPTTARHV-AEGLGTKVAAILDDGPCSVGLESTIVGL--DA 189

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LRPGGL  E ++R +   L    +      +PG L SHYAP   VRL A      E
Sbjct: 190 APCLLRPGGLPAEEIERVLGQTLSRATEG--KISAPGQLVSHYAPDGHVRLNATSAQAGE 247

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            L+ FG++           LNLS+ G L EAA  LF  +   D +G  +IA + IP HGL
Sbjct: 248 VLLGFGHM--------DCDLNLSRDGDLTEAASALFESLHQLDATG-KAIAVAPIPQHGL 298

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 299 GAAINDRLRRAAAPR 313


>gi|295092488|emb|CBK78595.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cf. saccharolyticum
           K10]
          Length = 377

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 111/336 (33%), Positives = 166/336 (49%), Gaps = 26/336 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A   L  G  +A PTETVYGL  ++ + TA RR+YE K RP+ NPLI H++D 
Sbjct: 41  DRAVLAEAAAILREGGLVAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAHIADF 100

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             +    A +      LA+ FWPGPLT+V     +  +   +T  L+T   R+P     +
Sbjct: 101 EALAPLTAEIPEAGRKLAEAFWPGPLTMVF--KKSGVVPHGTTGGLETVAVRMPSDPVAR 158

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN SG+ S T  +H+L   +  +I +I+DGG   IG+ESTIV+V  
Sbjct: 159 ELIRLAGVPIAAPSANTSGRPSPTRAEHVL-QDMDGKIEMIVDGGPVGIGVESTIVDVT- 216

Query: 186 EKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQV---- 236
           E+   +LRPG + +E L+  +        +   +     P++PGM   HYAP++ +    
Sbjct: 217 EEIPTLLRPGAVTMEMLRSVLGETAVDPAITGPMRADIKPKAPGMKYRHYAPKADLTLVE 276

Query: 237 --------RLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNY 285
                   R+ A+      A  R G +  +  ++   A I  ++         A NL+  
Sbjct: 277 GETDAVVSRINALAAEKLGAGQRVGIICTEETKDRYPAGILKSIGMRANEATVAHNLYAV 336

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  DD     I   S     LG AI NRL +AA  
Sbjct: 337 LREFDDLEVDCIFSESFQTDDLGQAIMNRLNKAAGY 372


>gi|260752549|ref|YP_003225442.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551912|gb|ACV74858.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 329

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 128/324 (39%), Positives = 186/324 (57%), Gaps = 11/324 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   DS  + KA + +  G P+ +PTETVYGLA D+ +  A+ R+Y+ K RP+ NPLI 
Sbjct: 11  IILPCDSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIV 70

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           H++ I    +    +  +L LA+ FWPG LT+VL L     I  + TA L T   R+P  
Sbjct: 71  HIAHIEQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSH 130

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              +++I+ +GHPLA PSAN+SG IS T   H+   S+  +I  ++DGGI+  GLESTI+
Sbjct: 131 PVMRQVIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTII 189

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
            V    ++++LRPG +  E L ++  + +     +   P +PG L SHYAP   VRL   
Sbjct: 190 YV-GADEIKLLRPGPITSEELAQSSHLPITEYKADGQNPVAPGQLVSHYAPSQPVRLNIS 248

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                E LI FG++   +        NLS +G L EAA +LF+ +   + S    IA + 
Sbjct: 249 QKEADEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAP 300

Query: 302 IPNHGLGIAINNRLERAAAPRNQS 325
           IP  G+G AIN+RL RAAAPR++ 
Sbjct: 301 IPLEGIGKAINDRLGRAAAPRDEQ 324


>gi|322804412|emb|CBZ01962.1| sua5 YciO YrdC YwlC family protein [Clostridium botulinum H04402
           065]
          Length = 351

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 162/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S 
Sbjct: 13  IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           I  + +    + P++  L   FWPGP+T++L       I   ++A L +   R+P     
Sbjct: 73  IKDIDELVKKIPPIAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T+++  +   +   + +I+ G  S++G+EST+++  
Sbjct: 131 MELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E +K       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 IN-PPCILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLNTIAHNLFY 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDIGVAIMNRLKKSAGY 345


>gi|220922794|ref|YP_002498096.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium nodulans ORS
           2060]
 gi|219947401|gb|ACL57793.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium nodulans ORS
           2060]
          Length = 335

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 132/316 (41%), Positives = 181/316 (57%), Gaps = 3/316 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  L +A   L  G  +A PTETVYGL  D+ N  A+  +Y  K+RP  NPLI H+ D+
Sbjct: 22  DAAGLAEAARLLREGRLVAFPTETVYGLGGDATNGAAVAGIYAAKERPRFNPLIAHLPDL 81

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +  ++  +  P +L LA+ FWPGPLTLV+       +  L+ A L +   RVP     + 
Sbjct: 82  AAARREGAFGPEALRLAETFWPGPLTLVVPRAEDACVCDLALAGLDSVALRVPAARLARD 141

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A PSANRSG++S TN  H+L   +   I  ++DGG   +G+ESTIV     
Sbjct: 142 LLRAVGRPVAAPSANRSGRVSPTNADHVLGD-LDGRIAAVLDGGACPVGVESTIVACLDG 200

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
              ++LRPGG+  E ++  +   L         P +PG+L SHYAPR+ VRL A  +   
Sbjct: 201 DP-QLLRPGGVPREAIEAVLGRPLRAPGAAGEAPVAPGLLASHYAPRAAVRLDAAAIGED 259

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EA + FG      +  A   LNLS +G L EAA NLF+ ++  D SGA++IA   IP HG
Sbjct: 260 EAALLFGEARPAGLARARFILNLSPSGDLAEAAANLFSMLRRLDASGAATIAVMPIPRHG 319

Query: 307 LGIAINNRLERAAAPR 322
           LG AI +RL RAAAPR
Sbjct: 320 LGEAIADRLARAAAPR 335


>gi|188583774|ref|YP_001927219.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium populi BJ001]
 gi|179347272|gb|ACB82684.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium populi BJ001]
          Length = 329

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 130/316 (41%), Positives = 180/316 (56%), Gaps = 3/316 (0%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ L +A   + AG  +A+PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+ +
Sbjct: 16  DADGLARAAALIGAGRLVALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATV 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
                  + D  +L LA+ FWPGPLTLV+   ST  +  L+ A L +   RVP     + 
Sbjct: 76  EAALGEGTFDEAALRLAEHFWPGPLTLVVPAASTGSVCDLARAGLDSVALRVPAHATARA 135

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G P+A PSANRSG++S T+  H+L+  +   I  ++DGG   +G+ES++V     
Sbjct: 136 LLERVGRPVAAPSANRSGRVSPTSADHVLTD-LDGRIAAVLDGGACPVGVESSVVACLG- 193

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
              R+LRPGG+    +   +    E   D  S P  PG+L SHYAPR+ VRL A  + P 
Sbjct: 194 GPPRLLRPGGVTRAAIAAVLGFAPEAGGDPGSRPVGPGLLASHYAPRAGVRLDATGLEPG 253

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EA++ FG      ++ A     LS  G   EAA  LF  ++  D SGA +IA   +P  G
Sbjct: 254 EAVLLFGAFRPAGLDRAAAVETLSARGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEG 313

Query: 307 LGIAINNRLERAAAPR 322
           LG AIN+RL RAAAPR
Sbjct: 314 LGEAINDRLRRAAAPR 329


>gi|56551895|ref|YP_162734.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543469|gb|AAV89623.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 329

 Score =  341 bits (875), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 128/324 (39%), Positives = 186/324 (57%), Gaps = 11/324 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   DS  + KA + +  G P+ +PTETVYGLA D+ +  A+ R+Y+ K RP+ NPLI 
Sbjct: 11  IILPCDSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIV 70

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           H++ I    +    +  +L LA+ FWPG LT+VL L     I  + TA L T   R+P  
Sbjct: 71  HIAHIEQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSH 130

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              +++I+ +GHPLA PSAN+SG IS T   H+   S+  +I  ++DGGI+  GLESTI+
Sbjct: 131 PVMRQVIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTII 189

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
            V    ++++LRPG +  E L ++  + +     +   P +PG L SHYAP   VRL   
Sbjct: 190 YV-GADEIKLLRPGPITSEELAQSSPLPITEYKADGQNPVAPGQLVSHYAPSQPVRLNIS 248

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                E LI FG++   +        NLS +G L EAA +LF+ +   + S    IA + 
Sbjct: 249 QKEADEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAP 300

Query: 302 IPNHGLGIAINNRLERAAAPRNQS 325
           IP  G+G AIN+RL RAAAPR++ 
Sbjct: 301 IPLEGIGKAINDRLGRAAAPRDEQ 324


>gi|241761788|ref|ZP_04759874.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373702|gb|EER63262.1| Sua5/YciO/YrdC/YwlC family protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 329

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 127/324 (39%), Positives = 186/324 (57%), Gaps = 11/324 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   DS  + KA + +  G P+ +PTETVYGLA D+ +  A+ R+Y+ K RP+ NPLI 
Sbjct: 11  IILPCDSKGIEKAVQLIRGGYPVGLPTETVYGLAADAFSGEAVARIYQAKGRPSFNPLIV 70

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           H++ I    +    +  +L LA+ FWPG LT+VL L     I  + TA L T   R+P  
Sbjct: 71  HIAHIEQAAEIVEFNDEALSLAQKFWPGALTMVLPLKKDAKIASIVTAGLDTVAIRMPSH 130

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              +++I+ +GHPLA PSAN+SG IS T   H+   S+  +I  ++DGGI+  GLESTI+
Sbjct: 131 PVMRQVIKAFGHPLAAPSANKSGSISPTTALHV-KESLNGKIAAVLDGGIADKGLESTII 189

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
            +    ++++LRPG +  E L ++  + +     +   P +PG L SHYAP   VRL   
Sbjct: 190 YI-GADEIKLLRPGPITSEELAQSSHLPITEYKADGQNPVAPGQLVSHYAPSQPVRLNIS 248

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                E LI FG++   +        NLS +G L EAA +LF+ +   + S    IA + 
Sbjct: 249 QKEADEWLIGFGDIAGDD--------NLSPSGDLTEAAAHLFSALHRGEKSAYPRIAIAP 300

Query: 302 IPNHGLGIAINNRLERAAAPRNQS 325
           IP  G+G AIN+RL RAAAPR++ 
Sbjct: 301 IPLEGIGKAINDRLGRAAAPRDEQ 324


>gi|227552471|ref|ZP_03982520.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX1330]
 gi|227178383|gb|EEI59355.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TX1330]
          Length = 341

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 110/338 (32%), Positives = 171/338 (50%), Gaps = 21/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A + L AG  +A PTETVYGL  ++  P  +++++ +K RP  NPL
Sbjct: 1   METKR-YDETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+
Sbjct: 60  IVHVASFEQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+ES
Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIDDGATRIGVES 177

Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P +
Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237

Query: 235 QVRLR------AIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
            V +             +   IR G +    I + +     ++ +     ++ AA  LF 
Sbjct: 238 CVLMVREGDWSTAVQWAKNKKIRVGVIASPEISDQVRTDTAAVYMYNDNSVEAAAKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|153938602|ref|YP_001389505.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str.
           Langeland]
 gi|152934498|gb|ABS39996.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str.
           Langeland]
 gi|295317606|gb|ADF97983.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum F str.
           230613]
          Length = 351

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 162/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S 
Sbjct: 13  IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           I  + +    + P++  L   FWPGP+T++L       I   ++A L +   R+P     
Sbjct: 73  IKDIDELVKKIPPIAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T+++  +   +   + +I+ G  S++G+EST+++  
Sbjct: 131 MELISMAGVPIAAPSANLSGKPSPTDIETCI-EDLDGRVNMILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E +K       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 IN-PPCILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYKKGDVVSIGSRKDLNTIAHNLFY 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345


>gi|293571482|ref|ZP_06682509.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E980]
 gi|291608487|gb|EFF37782.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E980]
          Length = 341

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 109/338 (32%), Positives = 172/338 (50%), Gaps = 21/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A + L AG  +A PTETVYGL  ++  P  +++++ +K RP  NPL
Sbjct: 1   METKR-YDETELKEAAKALKAGELVAFPTETVYGLGANALLPNTVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+
Sbjct: 60  IVHVASFEQVKEYVDNFHPETEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  II+ G ++IG+ES
Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVF-HDLQGKITGIIEDGATRIGVES 177

Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P +
Sbjct: 178 TVLDLSNPTAMPMILRPGAVTKEQIEAVIGSPVAVDQHLVKENETPKAPGMKYKHYSPDT 237

Query: 235 QVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
           +V +             +   IR G +    I + +     ++ +     ++ AA  LF 
Sbjct: 238 RVLMVRDSDWSIAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|256003268|ref|ZP_05428260.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM
           2360]
 gi|255992959|gb|EEU03049.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM
           2360]
 gi|316939243|gb|ADU73277.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium thermocellum DSM
           1313]
          Length = 351

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 115/346 (33%), Positives = 171/346 (49%), Gaps = 30/346 (8%)

Query: 2   QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D+  ++ A E L  G  +A PTETVYGL  D+ +  A+++++E K RP+ 
Sbjct: 4   EILKIQSDNIDNEKIKYAAEVLRGGGLVAFPTETVYGLGADALDENAVKKIFEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++    V    A+V P +  L   FWPGPLTLVL+   +  I  + TA L T  
Sbjct: 64  NPLIVHIAGKEDVYGLAANVPPKAQILMDRFWPGPLTLVLE--KSDKIPSVITAGLSTVG 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P       LI   G P+A PSAN SG+ S T  KH++   +   + +IIDGG + IG
Sbjct: 122 LRAPSHPIALALIREAGIPIAAPSANLSGRPSPTVPKHVI-DDLYDRVDVIIDGGNANIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI-----SVELEYCVDETSTPQSPGMLKSHY 230
           +EST+++V  +  V ILRPGG+  E LK  +        L         P++PGM  +HY
Sbjct: 181 VESTVLDVTADVPV-ILRPGGVSFEQLKDVLKNVAMDPSLMKKPAGDFVPKAPGMKYTHY 239

Query: 231 APRSQVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKL 275
           +P++ V +           I                      K    ++ S+ L    + 
Sbjct: 240 SPKADVIVVEGEPEKVAEKINSLIAEYQSKNIPVGVLATEQTKEFYKSVPSITLGDRLEP 299

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  A NLF   +  DD G   I   +I N G+G+A+ NR+++AA  
Sbjct: 300 ETIAANLFKAFRDFDDIGIKVIFAEAIDNQGIGLAVMNRMKKAAGY 345


>gi|150015296|ref|YP_001307550.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149901761|gb|ABR32594.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 343

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 108/335 (32%), Positives = 163/335 (48%), Gaps = 27/335 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +R+A E +  G  +  PTETVYGL  D+ N  A+ ++++ K RP  NPLI HVS  
Sbjct: 8   DEEKIREAAECIKNGGTVVFPTETVYGLGADALNEEAVEKIFKAKGRPQDNPLIIHVSS- 66

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +  +A   P ++  L   FWPGPLT++L       I  +++ANL +   R+P     +
Sbjct: 67  KKLDLYAKEIPKVADELINRFWPGPLTIILS--KKDIIPNVTSANLNSIGIRMPDNEVAR 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLIE     +A PSAN SG+ S T+ +  +   +  ++  I+ G  S IG+ESTIV+   
Sbjct: 125 KLIELSQTTIAAPSANISGRPSPTDFQRCI-EDLDGKVDYILGGEQSDIGVESTIVDCTV 183

Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
              + +LRPGG+ +E L+       I   +     E   P++PGM   HYAP ++V + +
Sbjct: 184 VPPI-VLRPGGITLEMLREVDPRIEIDKAIMEKPSENLKPKAPGMKYKHYAPNAKVTIIS 242

Query: 241 IHVNPREALIR---------FGNVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNY 285
                    IR            V I  +E  +       S+ L     L   A +LF  
Sbjct: 243 GERKKTIEKIREMVHYNIEKGKKVCILTVEENVDEYTEGTSIVLGSLSDLSTVARSLFEA 302

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD GA  +        G+G+AI NRL +AA 
Sbjct: 303 LRKCDDLGADLVFAEGYEEKGVGVAIMNRLNKAAG 337


>gi|302392964|ref|YP_003828784.1| translation factor SUA5 [Acetohalobium arabaticum DSM 5501]
 gi|302205041|gb|ADL13719.1| translation factor SUA5 [Acetohalobium arabaticum DSM 5501]
          Length = 351

 Score =  340 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 107/350 (30%), Positives = 165/350 (47%), Gaps = 33/350 (9%)

Query: 1   MQIMSIT------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+++  T      D NA+ +    L  G  +A PTETVYGL  ++ +  A+ +++  K R
Sbjct: 1   MEVIKGTRLFNLDDRNAISECSSILTDGGLVAFPTETVYGLGANALDAEAVNKIFTAKGR 60

Query: 55  PAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           PA NPLI H++ +S + K    V      L+  FWPGPLTLVL       +  ++T  L 
Sbjct: 61  PADNPLIVHIASLSQLDKLVLKVPNQVKLLSDRFWPGPLTLVLKKKEI--VPDITTGGLD 118

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P       L+     P+A PSAN SG+ S T  +H+++  +   I  IIDGG +
Sbjct: 119 TIAVRLPDHKVALDLLNRCQLPVAAPSANLSGRPSPTLAQHVVTD-LGGRIEAIIDGGQT 177

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD-----ETSTPQSPGML 226
            +G+EST++++  ++   +LRPGG+  + L   +  V+++  V      E  +  +PGM 
Sbjct: 178 GVGVESTVISLVEDRP-TLLRPGGITYQELTEVLGEVDIDSAVKAELESENKSALAPGMK 236

Query: 227 KSHYAPRSQVRLRAIHVN---------------PREALIRFGNVPIKNIENAIISLNLSK 271
             HY+P + V L                         +         N   A     +  
Sbjct: 237 YKHYSPEADVILVEGEAERIAHKITKLADEYLAEGYQVGIMATEENSNFYTAGQVQVMGS 296

Query: 272 TGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             KL   + NLF  ++  DDSG   I    + N GLG+AI NRL +AA  
Sbjct: 297 RDKLSVISANLFRLLRSFDDSGVDIILIEGVSNQGLGLAIMNRLRKAAGY 346


>gi|254488117|ref|ZP_05101322.1| Sua5/YciO/YrdC family protein [Roseobacter sp. GAI101]
 gi|214044986|gb|EEB85624.1| Sua5/YciO/YrdC family protein [Roseobacter sp. GAI101]
          Length = 357

 Score =  340 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 132/323 (40%), Positives = 186/323 (57%), Gaps = 14/323 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   D   + +A   L +G  +AIPTETVYGLA D+ N  A+ R+Y  K RP+ NPL
Sbjct: 48  MTEILRPDLAGIDRAATLLRSGGLVAIPTETVYGLAADACNGAAVARIYAAKGRPSFNPL 107

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I H+++    +++     L+  LA  FWPGPLTLVL L     +  L TA L +   RVP
Sbjct: 108 IVHLAETQQARRYGLWSDLAEVLATAFWPGPLTLVLPLAPDHGLSSLVTAGLNSVAIRVP 167

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 +++  +G P+A PSAN SG+IS T  +H+L   +  +I  ++D G   +GLEST
Sbjct: 168 ALDAAHQVLTAFGGPVAAPSANPSGRISATTARHVL-DGLGGKIDAVLDAGPCPVGLEST 226

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+ +   +   +LR GGL +E ++ A+   LE      +   +PG L SHYAP ++VRL 
Sbjct: 227 IIGLHTPRP-TLLRAGGLPVEAIEAALGEPLEIA--NGAEIIAPGQLASHYAPNARVRLN 283

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A+  NP E ++ FG V           LNLS TG L EAA +LF+++   D      IA 
Sbjct: 284 ALSANPGEVMLGFGPV--------DGDLNLSPTGDLIEAAAHLFDHLHALDAMD-KPIAV 334

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
           + +P+HGLG AIN+RLERAAAPR
Sbjct: 335 APVPDHGLGRAINDRLERAAAPR 357


>gi|254464111|ref|ZP_05077522.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium Y4I]
 gi|206685019|gb|EDZ45501.1| Sua5/YciO/YrdC family protein [Rhodobacterales bacterium Y4I]
          Length = 316

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/323 (40%), Positives = 177/323 (54%), Gaps = 14/323 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++ T++  + +A + L  G  ++ PTETVYGL  D+R   A+  +YE K RP+ NPLI
Sbjct: 7   EILAATEA-GIARAAQLLREGKLVSFPTETVYGLGADARQGKAVAAIYEAKGRPSFNPLI 65

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV      +++   +  +  LA  FWPGPLTLVL L     I PL TA L T   RVP 
Sbjct: 66  AHVHSAEAAQRYVEWNGTAETLAHAFWPGPLTLVLPLRGGHGISPLVTAGLDTLGVRVPA 125

Query: 122 GF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L+     P+A PSAN SG+IS T   H+  + +   I  I+D G   +GLESTI
Sbjct: 126 HPAAQALLRALDGPVAAPSANPSGKISPTTAAHV-KAGLDGRIAAILDDGACGVGLESTI 184

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + +   + V +LRPGGL  E ++  +  +L    D      +PG L SHYAP + VRL A
Sbjct: 185 IGLAGPEPV-LLRPGGLAAEEIEAVLGRKLGV-RDAHDPLTAPGQLLSHYAPGAPVRLNA 242

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
                 E  + FG        +    LNLS+ G L EAA NLF ++   D  G   IA +
Sbjct: 243 AAPVKGELYLGFG--------HGACDLNLSERGDLAEAAANLFGHLHQLDALG-KPIAVA 293

Query: 301 SIPNHGLGIAINNRLERAAAPRN 323
            IP HGLG AIN+RL RAAAPR+
Sbjct: 294 PIPEHGLGEAINDRLRRAAAPRD 316


>gi|126653458|ref|ZP_01725554.1| hypothetical protein BB14905_19345 [Bacillus sp. B14905]
 gi|126589814|gb|EAZ83947.1| hypothetical protein BB14905_19345 [Bacillus sp. B14905]
          Length = 344

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 116/347 (33%), Positives = 177/347 (51%), Gaps = 24/347 (6%)

Query: 1   MQ-IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+ +  + DSN        +A + L+AG  +A PTETVYGL   + N  A+++++E K R
Sbjct: 1   METVCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAVATNDVAVKKIFEAKGR 60

Query: 55  PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           P+ NPLI HV     V  +   +  ++     LFWPGPLTLV+       +    TA L 
Sbjct: 61  PSDNPLIVHVGTKEEVTNYIEHISEIAKQCMDLFWPGPLTLVMPAKPNV-LAQSVTAGLS 119

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P       L++    PLA PSANRSG+ S T   H+L   +   IP I+DGG +
Sbjct: 120 TVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAIHVL-DDLGGYIPYILDGGST 178

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE---TSTPQSPGMLKSH 229
            IGLEST+++V  E  V ILRPGG+  E L+  I   ++    E     TP++PGM  +H
Sbjct: 179 GIGLESTVLDVTHEPPV-ILRPGGITKEMLEAKIGPVIQPTKIEQKLEETPKAPGMKYTH 237

Query: 230 YAPRSQVRLRAIHVNP--------REALIRFGNVPIKNIEN--AIISLNLSKTGKLKEAA 279
           YAP + V L   H           ++       +  +N ++  A    ++   G  +E  
Sbjct: 238 YAPNAPVYLINCHDGEVSEAVQQLQQQGHAVALLAPENFQHSKADFYFSVGAEGSKEEMG 297

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            +L++ ++  D + A+ I  ++    G+G AI NRLE+A+  +  S 
Sbjct: 298 ASLYHALRACDKTTATVILATTTSAEGVGAAIMNRLEKASGGKWYSL 344


>gi|303239759|ref|ZP_07326283.1| Sua5/YciO/YrdC/YwlC family protein [Acetivibrio cellulolyticus CD2]
 gi|302592696|gb|EFL62420.1| Sua5/YciO/YrdC/YwlC family protein [Acetivibrio cellulolyticus CD2]
          Length = 351

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 112/338 (33%), Positives = 176/338 (52%), Gaps = 27/338 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + +R A + L  G  +A PTETVYGL  ++ N  A+ R++  K RP+ NPLI HV+D
Sbjct: 13  IDISKIRYASQVLKDGGLVAFPTETVYGLGANALNKEAVERIFIAKGRPSDNPLIVHVAD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
              V+K  S +   +  L   FWPGPLTLV+D L    I  + TA L T   RVP     
Sbjct: 73  KRSVEKLVSHIPNKASILMDKFWPGPLTLVMDKLPI--IPEVITAGLDTVAIRVPSHPIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI     P+A PSAN SG+ S T+ +H+++  +  ++ +IIDGG S IG+EST+V++ 
Sbjct: 131 LALIREAELPVAAPSANVSGKPSPTDSRHVIND-LNGKVDVIIDGGFSDIGVESTVVDMV 189

Query: 185 CEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQ--- 235
            +  + +LRPGG+ +E L+  +         ++  +D+   P+SPGM   HYAP++    
Sbjct: 190 LDPPM-LLRPGGITVEQLEDVLGQIQIDPTLVKKNLDDIIIPRSPGMKYKHYAPKADVII 248

Query: 236 ---------VRLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLF 283
                    VR+  +        I+ G +       +    ++++L         A NLF
Sbjct: 249 VEGDPEKIAVRINEMVKEYEGKDIKVGILATDETVHLYPESLAVSLGSRLSPGTIAANLF 308

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             ++  D +    I   S+ + G+G+AI NR+++AA  
Sbjct: 309 KALRDFDKTDVQMIFAESVDSSGIGLAIMNRMKKAAGY 346


>gi|148253877|ref|YP_001238462.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1]
 gi|146406050|gb|ABQ34556.1| translation factor SUA5 [Bradyrhizobium sp. BTAi1]
          Length = 333

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 137/307 (44%), Positives = 180/307 (58%), Gaps = 8/307 (2%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A PTETVYGL  D+ N  AI RLY+ K RPA NPLI HV+D++  ++    D ++
Sbjct: 30  RGGLVAFPTETVYGLGADASNAAAITRLYQAKGRPAFNPLIAHVADVAAARRIGRFDAVA 89

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
             LA+ FWPGPLTLVL       +  L+TA L T   RVP     + L+  +G  +  PS
Sbjct: 90  ERLAQAFWPGPLTLVLPQAEGCPVADLATAGLDTVAIRVPAHPVARALLAAFGGAVVAPS 149

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG +S T   H+ ++ +   I LI+DGG  ++G+ESTI+    E  +  LRPGG+  
Sbjct: 150 ANISGHVSPTMAAHV-AADLDGRIDLILDGGAVEVGVESTIIGCFDEPTL--LRPGGVPR 206

Query: 200 ETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           E ++  +   L          +  P +PGML SHYAPR+ VRL A  V P EAL+ FG V
Sbjct: 207 EAIEAVLGRPLARAAAAEAQASEQPLAPGMLASHYAPRAAVRLAATEVAPDEALLAFGPV 266

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
            I    +A   LNLS +G   EAA +LF Y++  D  GA SIA   IP+ GLG AIN+RL
Sbjct: 267 AIPGAADAAAMLNLSPSGDPAEAATHLFGYLRSLDAKGARSIAVMPIPDDGLGEAINDRL 326

Query: 316 ERAAAPR 322
            RAAAPR
Sbjct: 327 RRAAAPR 333


>gi|146278497|ref|YP_001168656.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145556738|gb|ABP71351.1| translation factor SUA5 [Rhodobacter sphaeroides ATCC 17025]
          Length = 312

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 137/315 (43%), Positives = 179/315 (56%), Gaps = 15/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A   L  G  +A+PTETVYGLA D+RN  A+ R++E K RP  NPLI HV D+ 
Sbjct: 11  PEGVADAARILAGGGLVALPTETVYGLAGDARNDRAVARIFEAKGRPQFNPLIVHVPDLE 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             +++A  D  +L LA+ FWPGPLTLVL  L    + PL +A L T   RVP     ++L
Sbjct: 71  AARRYARFDAEALRLAETFWPGPLTLVLP-LEGEPVSPLVSAGLPTVAIRVPAHPLAQRL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T  +H+L   +   I  ++DGG  ++G+ESTIV      
Sbjct: 130 MRAFGGPLAAPSANPSGRVSPTRPEHVL-EGLAGRIEAVLDGGACEVGVESTIV--APGD 186

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LRPGGL +E L+  I   L      +  P +PG L SHYAP + VRL A    P E
Sbjct: 187 PPLLLRPGGLPVEALEDCIGEPL-ITGGSSERPSAPGQLSSHYAPDAPVRLGATEAAPDE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             I FG             LNLS  G L EAA NLF+ ++ AD  G   IA + +P  GL
Sbjct: 246 TWIGFGRTGGP--------LNLSPGGDLVEAAANLFHLLRQADRLG-RPIAVAPVPERGL 296

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAA+PR
Sbjct: 297 GRAINDRLRRAASPR 311


>gi|84684410|ref|ZP_01012311.1| Putative translation factor [Maritimibacter alkaliphilus HTCC2654]
 gi|84667389|gb|EAQ13858.1| Putative translation factor [Rhodobacterales bacterium HTCC2654]
          Length = 317

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 132/319 (41%), Positives = 183/319 (57%), Gaps = 13/319 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D   + +A E L AG  ++ PTETVYGL   + +  A+ R++E K RP  NPLI HV 
Sbjct: 11  VPDDTGIARAAEVLLAGGLVSFPTETVYGLGGVATDDIAVARIFEAKGRPHFNPLIAHVP 70

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           D+  V K A +   +  LA+ FWPGPLTLVL + +   + PL +A L T   RVP     
Sbjct: 71  DLEAVSKIAELSERAHDLAQAFWPGPLTLVLPMRADAGLSPLVSAGLTTVAVRVPDHPLA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +KL+   G P+  PSAN SG+IS T   H+L + +   I  ++DGG   +G+ESTIV   
Sbjct: 131 QKLLRAVGRPVVAPSANPSGRISPTEAAHVL-AGLGGRIEAVLDGGPCSVGVESTIVGF- 188

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
              +  +LRPGGL  E ++ A+   L     E +   +PG L SHYAP ++VRL A    
Sbjct: 189 -NPEPVLLRPGGLPAEAIEDALGAPLARRA-EGAGINAPGQLASHYAPDARVRLDAEAAR 246

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
           P E ++ FG        +A   +NLS +G L EAA NLF  +   D +G + IA + +P+
Sbjct: 247 PGERMLGFG--------DADGEMNLSPSGDLVEAAANLFRMLHALDAAGDAPIAVAPVPD 298

Query: 305 HGLGIAINNRLERAAAPRN 323
            GLG AIN+RL RAAAPR+
Sbjct: 299 TGLGRAINDRLRRAAAPRD 317


>gi|312114717|ref|YP_004012313.1| Sua5/YciO/YrdC/YwlC family protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219846|gb|ADP71214.1| Sua5/YciO/YrdC/YwlC family protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 320

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 134/321 (41%), Positives = 177/321 (55%), Gaps = 13/321 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++   D  A+ +A   L +G  +A PTETVYGL  D+ N  A+ R++E K RP  NPLI 
Sbjct: 1   MIENADGTAIERAAHILRSGGLVAFPTETVYGLGADATNGVAVARIFEAKGRPRFNPLIV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVP 120
           HV D    ++ A  D  +  LA  FWPGPLTLVL L       +  L TA L T   RVP
Sbjct: 61  HVPDADAARRFAVFDAEADALAARFWPGPLTLVLPLRRDVEQPLSDLVTAGLDTVAIRVP 120

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L+E  G P+A PSAN SG+IS T   H+ +  I   + +I+DGG +  GLEST
Sbjct: 121 HHPVARALLEAAGVPVAAPSANISGRISPTRAAHV-AEDIGARVNMILDGGAADAGLEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV ++   +  +LRPG +  E ++ A+   L     E     +PG L SHYAP + VRL 
Sbjct: 180 IVALK--PRPTMLRPGAVAREDVEAALGAPLAD-RGEGDGVTAPGQLASHYAPNASVRLH 236

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A    P E L+ FG    KN      ++NLS+ G L+EAA NLF  ++  D      IA 
Sbjct: 237 ASEARPGETLLGFGPAAPKN------AMNLSRAGDLREAAANLFACLRALDAEKPGRIAV 290

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             IP+ GLG AIN+RL RAAA
Sbjct: 291 MPIPDKGLGEAINDRLRRAAA 311


>gi|225419868|ref|ZP_03762171.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme
           DSM 15981]
 gi|225041492|gb|EEG51738.1| hypothetical protein CLOSTASPAR_06209 [Clostridium asparagiforme
           DSM 15981]
          Length = 360

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 111/348 (31%), Positives = 163/348 (46%), Gaps = 36/348 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I D   L +A E L  G  +A PTETVYGL  ++ +  A R++YE K RP+ NPLI HV
Sbjct: 13  RIHDRELL-EAAEILREGGLVAFPTETVYGLGANALDEAAARKIYEAKGRPSDNPLIAHV 71

Query: 65  SDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           +D   V+      P +   L + FWPGPLT++        +   +T  L T   R+P   
Sbjct: 72  ADPEDVEALVEYIPENGRKLMEAFWPGPLTMIFPKSPA--VPYGTTGGLDTVAIRMPSDP 129

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              +LI   G P+A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV+
Sbjct: 130 VANRLIALAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIDMIIDGGPVGIGVESTIVD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQV- 236
           V C +   +LRPG + +E L+  +  V+++  +         P++PGM   HYAPR+++ 
Sbjct: 189 VSC-RIPTVLRPGAITMEMLREVLDEVKIDPAILGPMGADMRPRAPGMKYKHYAPRAELT 247

Query: 237 --------------------RLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTG 273
                               R+  +      A  R G +      +     +  ++    
Sbjct: 248 LVEPTEGQGEDAAAVERMIQRVNQLAQEKLAAGSRVGIICTDESRDRYEGGLVRSIGARA 307

Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           K +  A NL+  ++  DD     I   S     LG AI NRL +AA  
Sbjct: 308 KKETVAHNLYAVLREFDDLKVDYIYSESFSEDHLGQAIMNRLSKAAGY 355


>gi|126728298|ref|ZP_01744114.1| Sua5/YciO/YrdC family protein [Sagittula stellata E-37]
 gi|126711263|gb|EBA10313.1| Sua5/YciO/YrdC family protein [Sagittula stellata E-37]
          Length = 328

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 133/316 (42%), Positives = 177/316 (56%), Gaps = 13/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A   L  G  +A PTETVYGL  D+R+  A+  +Y  K RP+ NPLI H +D+
Sbjct: 25  DPTGLARAASLLRDGRLVAFPTETVYGLGADARDDHAVAAIYAAKGRPSFNPLIVHFADL 84

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
             +K   +    +  +A+ FWPGPLTLVL L     +  L TA L T   R+P     + 
Sbjct: 85  DALKPMVTWSDEAEAIAESFWPGPLTLVLPLREGARVSKLVTAGLDTIAVRMPAAPVARD 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A PSAN SGQIS T  +H+ ++S+   +  I+DGG  K+GLESTI+ +   
Sbjct: 145 LLRAAGVPVAAPSANVSGQISPTRAEHV-AASLGDRVDAILDGGPCKVGLESTILGL--A 201

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            +  +LRPGG+  E L   +   +      + T  +PG  +SHYAPR+ VRL AI   P 
Sbjct: 202 GRPTLLRPGGITREALGHVLGRRIAE-RHGSDTISAPGQTRSHYAPRAAVRLNAIEFEPG 260

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EA + FG V           LNLS +G L EAA NLF Y+   D      IA S IP+ G
Sbjct: 261 EASLGFGEVEAD--------LNLSPSGDLTEAAANLFEYLHRLDAKAPKVIAISPIPHLG 312

Query: 307 LGIAINNRLERAAAPR 322
           LG+AIN+RL RAAA R
Sbjct: 313 LGVAINDRLSRAAADR 328


>gi|148269220|ref|YP_001243680.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga petrophila RKU-1]
 gi|147734764|gb|ABQ46104.1| translation factor SUA5 [Thermotoga petrophila RKU-1]
          Length = 335

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 112/321 (34%), Positives = 164/321 (51%), Gaps = 12/321 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  I  PTETVYG+  D+ N  A R+++E+K RP  NPLI H+   
Sbjct: 13  DEEVLKEAVELLRNGEVIIFPTETVYGIGADAYNEEACRKIFELKGRPTDNPLIVHIHSF 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A      L   K FWPGPLT++L    +  I  + TA L T   R+P      K
Sbjct: 73  DQLEEIAEGYEAHLDFLKKFWPGPLTVIL-RKKSEKIPLVVTAGLSTVAVRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE +G+P+A PSAN SG+ S TNV+H++   + K + LIID G +  GLESTIV++  E
Sbjct: 132 LIELFGNPIAAPSANLSGRPSATNVQHVIEDFMGK-VKLIIDAGNTPFGLESTIVDLTKE 190

Query: 187 KKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           K V +LRPG +E+E L+      +  +     +    P +PGM   HYAP   + L    
Sbjct: 191 KPV-LLRPGPVEVERLRELFPELVVPDFVRKGNFKGRPLAPGMKYRHYAPSKPLILVEDL 249

Query: 243 VNPREALIRFGNVPI----KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
               E L ++ N  +    +  E     + +         A N+F+ ++ A+  G   I 
Sbjct: 250 TKMEEVLKKYPNHVVICVDERKELYDDIIVVGSLKNPYSIAQNIFSVLREAEKRGKEYII 309

Query: 299 FSSIPNHGLGIAINNRLERAA 319
                  G+  A+ NRL +AA
Sbjct: 310 VEGFEERGILFAVMNRLRKAA 330


>gi|300023494|ref|YP_003756105.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525315|gb|ADJ23784.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 315

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 124/317 (39%), Positives = 186/317 (58%), Gaps = 6/317 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  + +A   L +G  +A PTETVYGL  D+ N  A+ R++  K RP+ NPLI HV  +
Sbjct: 4   NAEWIEEAGGLLRSGALVAFPTETVYGLGADATNGEAVARVFAAKGRPSFNPLIVHVLGL 63

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                  S    +  L + FWPGPLTLV+  + TTD+  L +A L T   R P     ++
Sbjct: 64  EQAVIIGSFSATARRLTEAFWPGPLTLVVPRIETTDVSELVSAGLPTVALRSPDHPVARQ 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++    P+A PSANRSG +S T  +H+ ++ +     +I+D G +  GLEST+V++   
Sbjct: 124 LLKAAQRPIAAPSANRSGHVSATRAEHV-AADLGDRAAVILDAGQTPRGLESTVVSLAGA 182

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             V +LRPG +  + +++ +  ++    +      SPG L+SHYAP S++RL A    P 
Sbjct: 183 APV-LLRPGAISADAIEKVLGEKIARASESGEHLTSPGQLRSHYAPNSRIRLNATAWEPH 241

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EA++ FG V       +  ++N+S +G L EAA NLF  ++  D SGA++IA + IP HG
Sbjct: 242 EAVLAFGAV---EEHPSKATINISPSGDLIEAAANLFAALRKLDGSGAATIAVTPIPAHG 298

Query: 307 LGIAINNRLERAAAPRN 323
           LG AIN+RL RAAAPR+
Sbjct: 299 LGEAINDRLARAAAPRD 315


>gi|256848017|ref|ZP_05553461.1| translation factor SUA5 [Lactobacillus coleohominis 101-4-CHN]
 gi|256715077|gb|EEU30054.1| translation factor SUA5 [Lactobacillus coleohominis 101-4-CHN]
          Length = 342

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 109/339 (32%), Positives = 180/339 (53%), Gaps = 20/339 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ + I + + + +A + L +G  +A PTETVYGL  D+ N  A++++Y+ K RP+ NPL
Sbjct: 1   METI-IYNLDQIGEAAQALRSGQLVAFPTETVYGLGADATNEEAVKKVYQAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+ ++MV+K+ A +   +  L   FWPG LT++L +   + +    T  L T  FR 
Sbjct: 60  IVHVASVAMVEKYAAEIPEKARQLMTAFWPGSLTIILKIKPGS-LSKTVTGGLSTVAFRF 118

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P C  T  LIE  G P+  PSAN SG+ S T  +H+    +  +I  I+D G +K+G+ES
Sbjct: 119 PKCQPTLDLIEQAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKIYGILDDGPTKVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236
           T++++  +  V ILRPG +    ++  I       + V +   P++PGM   HYAP +QV
Sbjct: 178 TVLDMSTDHPV-ILRPGAVTKADIEGVIGSIDLNHHHVGKGEIPKAPGMKYKHYAPNAQV 236

Query: 237 RLRAIHVNPREALIRFGNVPIK---NIENAII-SLNLSKTGK-------LKEAAFNLFNY 285
            +     +    +      P       E+ I+  L L K  +       + +A+  LF+ 
Sbjct: 237 YIVDPEEDWANVMKWVEQQPFAVGVMAEDVILKQLTLPKNAQAFSLGNGVTDASARLFDG 296

Query: 286 MKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
           +++ DD     +I   + P H LG+A  NRL ++A  ++
Sbjct: 297 LRMYDDEKQVQAIVTQAFPAHDLGLAYMNRLNKSAGGQH 335


>gi|299134711|ref|ZP_07027903.1| Sua5/YciO/YrdC/YwlC family protein [Afipia sp. 1NLS2]
 gi|298590521|gb|EFI50724.1| Sua5/YciO/YrdC/YwlC family protein [Afipia sp. 1NLS2]
          Length = 326

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 134/309 (43%), Positives = 177/309 (57%), Gaps = 8/309 (2%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L AG  +A PTETVYGL  D  N  AI RLYE K RP+ NPLI H+  +   ++ A  
Sbjct: 21  DCLAAGGLVAFPTETVYGLGADGTNGKAIARLYEAKGRPSFNPLIAHLPTLEAAQRVAIF 80

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           +  +L LA+ FWPGPLTLVL       +  L+TA L T   R+P     + +++  G P+
Sbjct: 81  NETALKLARAFWPGPLTLVLPKAPGCPVSELATAGLDTVAVRIPAHPVAQAILQALGRPI 140

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSANRSG +S T   H+L   +   I LI+DGG   +G+ESTIV       +  LRPG
Sbjct: 141 VAPSANRSGHVSPTTAAHVL-HDLDGRIDLIVDGGPVSVGVESTIVGCSGAPVL--LRPG 197

Query: 196 GLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           G     ++  + V L     +    +P +PGML+SHYAP + VRL A  +N  EAL+ FG
Sbjct: 198 GTPRADIEAVLGVPLGRLETIPGHDSPLAPGMLESHYAPAAAVRLGATALNADEALLAFG 257

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
                       +LNLS  G L EAA NLF +++  D++GA +IA   IP HGLG AIN+
Sbjct: 258 EALPGARPQR--TLNLSPRGDLIEAAANLFGHLRALDETGAQAIAVMPIPTHGLGEAIND 315

Query: 314 RLERAAAPR 322
           RL RAAA R
Sbjct: 316 RLRRAAADR 324


>gi|254476620|ref|ZP_05090006.1| Sua5/YciO/YrdC family protein [Ruegeria sp. R11]
 gi|214030863|gb|EEB71698.1| Sua5/YciO/YrdC family protein [Ruegeria sp. R11]
          Length = 315

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 132/315 (41%), Positives = 173/315 (54%), Gaps = 13/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A   L  G  +A PTETVYGL  D+R   A+  LY  K RP+ NPLI HV  I 
Sbjct: 13  PQDIRQAAALLQDGQLVAFPTETVYGLGADARQGEAVAALYAAKGRPSFNPLIAHVHSIE 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
             K+H      +  LA+ FWPGPLTLVL L    DI  L TA L+T   R+P     + L
Sbjct: 73  AAKRHVIWTETANKLAEAFWPGPLTLVLPLRDGHDISHLVTAGLETLGVRIPAHPAARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A PSAN SG+IS T   H++ + +   I  I+D G   +G+ESTIV +  E 
Sbjct: 133 LSALDGPVAAPSANPSGRISPTTAAHVV-AGLDGRIAAIVDDGPCGVGVESTIVGLSGET 191

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  E ++  +   L+   D +    +PG L SHYAPR++VRL     +P E
Sbjct: 192 PI-LLRPGGLAQEDIETVLGHPLQ-LRDASDPLTAPGQLLSHYAPRAKVRLNVTTPDPAE 249

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             + FG +           LNLS +  L EAA NLF ++   D      IA + IP HGL
Sbjct: 250 LYLGFGTMSCD--------LNLSDSADLVEAAANLFGHLHQLDAMD-KPIAVAPIPEHGL 300

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 301 GAAINDRLRRAAAPR 315


>gi|227544506|ref|ZP_03974555.1| translation factor SUA5 [Lactobacillus reuteri CF48-3A]
 gi|300909306|ref|ZP_07126767.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri SD2112]
 gi|227185529|gb|EEI65600.1| translation factor SUA5 [Lactobacillus reuteri CF48-3A]
 gi|300893171|gb|EFK86530.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri SD2112]
          Length = 354

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 108/327 (33%), Positives = 172/327 (52%), Gaps = 19/327 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ I+MV
Sbjct: 22  EIAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMV 81

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           KK+ A +   +  L   FWPG LT++L +     +    T  LKT  FR P C  T  LI
Sbjct: 82  KKYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLI 140

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++  +  
Sbjct: 141 EEAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGIVDNGPTRVGVESTVLDMSTDHP 199

Query: 189 VRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           V ILRPG +  + +++ I       + V +  TP++PGM   HYAP++QV +     N  
Sbjct: 200 V-ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTNWD 258

Query: 247 EALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GA 294
           + +      P         K ++  ++ +N    S    +++A+  LF+ ++  DD    
Sbjct: 259 KVVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNV 318

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321
            +I   + P H LG A  NRL ++A  
Sbjct: 319 KAIVTQAFPAHDLGGAYMNRLNKSAGG 345


>gi|172058702|ref|YP_001815162.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sibiricum
           255-15]
 gi|171991223|gb|ACB62145.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sibiricum
           255-15]
          Length = 332

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 111/333 (33%), Positives = 175/333 (52%), Gaps = 16/333 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   +     L++A   L  G  +AIPTETVYGLA D+ + TA+RR++  K RP+ NPL
Sbjct: 1   MKT-EMIQQETLKEAVRLLQEGEVVAIPTETVYGLAGDATSETAVRRIFAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+ +   K+    +  ++  L   FWPG LT++L+  S      L TA L T   R+
Sbjct: 60  IVHVASVEQAKQFVTHIPDVAAQLMDTFWPGALTIILE--SNGRASSLVTAGLDTIGLRM 117

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +LIE  G  LA PSANRSG+ S T+  H+ +  +   I  I+DGG + IG+ES
Sbjct: 118 PDHPLALQLIEATGLGLAAPSANRSGKPSPTSSAHV-AHDLSGRIAAIVDGGETGIGVES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD-ETSTPQSPGMLKSHYAPRSQV 236
           T+++      V ILRPGG+  E ++  I    L+  +  +  TP++PGM  +HYAP + +
Sbjct: 177 TVIDCTTNPPV-ILRPGGVTREQIESVIGNTALDPALSMKDQTPKAPGMKYTHYAPEATL 235

Query: 237 RLRAIHVNPREALIRFGN-------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
            + A  ++  + LI           V + + E+    +       ++ AA  L++ ++  
Sbjct: 236 SVVAGDLSFLQQLIDEARQNGQKTGVILFDGEDIEADVRCFLGTTMETAAQRLYDCLRRF 295

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D +    I    +   G+G+A+ NRL +AA  R
Sbjct: 296 DQTTVDQIFVRDLSEEGVGLAVRNRLHKAAGGR 328


>gi|148543689|ref|YP_001271059.1| translation factor SUA5 [Lactobacillus reuteri DSM 20016]
 gi|184153099|ref|YP_001841440.1| putative translation factor [Lactobacillus reuteri JCM 1112]
 gi|227363332|ref|ZP_03847461.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM2-3]
 gi|325682060|ref|ZP_08161578.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM4-1A]
 gi|148530723|gb|ABQ82722.1| translation factor SUA5 [Lactobacillus reuteri DSM 20016]
 gi|183224443|dbj|BAG24960.1| putative translation factor [Lactobacillus reuteri JCM 1112]
 gi|227071639|gb|EEI09933.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM2-3]
 gi|324978704|gb|EGC15653.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri MM4-1A]
          Length = 342

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 106/327 (32%), Positives = 172/327 (52%), Gaps = 19/327 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ I+MV
Sbjct: 10  EIAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMV 69

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           +K+ A +   +  L   FWPG LT++L +     +    T  LKT  FR P C  T  LI
Sbjct: 70  EKYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLI 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++  +  
Sbjct: 129 EEAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGIVDNGPTRVGVESTVLDMSTDHP 187

Query: 189 VRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           V ILRPG +  + +++ I       + V +  TP++PGM   HYAP++QV +     +  
Sbjct: 188 V-ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTDWD 246

Query: 247 EALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GA 294
           + +      P         K ++  ++ +N    S    +++A+  LF+ ++  DD    
Sbjct: 247 KVVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNV 306

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321
            +I   + P H LG A  NRL ++A  
Sbjct: 307 KAIVTQAFPAHDLGGAYMNRLNKSAGG 333


>gi|294617197|ref|ZP_06696849.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679]
 gi|291596542|gb|EFF27783.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1679]
          Length = 341

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 111/338 (32%), Positives = 173/338 (51%), Gaps = 21/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A E L AG  +A PTETVYGL  ++  P ++++++ +K RP  NPL
Sbjct: 1   METKR-YDETELQEAAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+
Sbjct: 60  IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+ES
Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177

Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P +
Sbjct: 178 TVLDLSDPAVAPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237

Query: 235 QVRLRAIHVNP------REALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
           +V +             +   IR G +    I + +     ++ +     ++ AA  LF 
Sbjct: 238 RVLMVRDGDWSTAVQWTKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|13476186|ref|NP_107756.1| hypothetical protein mlr7439 [Mesorhizobium loti MAFF303099]
 gi|14026946|dbj|BAB53542.1| mlr7439 [Mesorhizobium loti MAFF303099]
          Length = 327

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 153/317 (48%), Positives = 197/317 (62%), Gaps = 4/317 (1%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL +A   L  G  +AIPTETVYGLA D+ N   + R++E K RP  NPLI HV+D++M
Sbjct: 12  EALERALALLGDGDVVAIPTETVYGLAGDATNGIGVARIFEAKGRPRFNPLIAHVADMAM 71

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            ++ A  DPLS  LA+ FWPGPLTLVL       IHPL TA L T   R+P GF   LI 
Sbjct: 72  AERIAVFDPLSKKLAQAFWPGPLTLVLPQRPGNGIHPLVTAGLDTIALRMPRGFGGDLIA 131

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSAN SG+IS T  + + ++ +   I L++DGG + +GLESTIV  +    V
Sbjct: 132 KLGRPLAAPSANSSGRISATTAQAV-AADLGARIKLVVDGGATPVGLESTIVKAEGAG-V 189

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           R+LRPGG+  E      ++ +E      +  ++PGML SHYAP + +RL A  V   EAL
Sbjct: 190 RLLRPGGIAAEE--IEAAIGMELLRGGGAGIEAPGMLASHYAPGAAMRLNAGMVGEGEAL 247

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG    +   NA   LNLS +G L+EAA NLF YM+  D SGA +IA  +IP  GLG 
Sbjct: 248 LGFGGNRAEGWRNATAFLNLSASGDLREAASNLFAYMQELDRSGARTIAVETIPFDGLGE 307

Query: 310 AINNRLERAAAPRNQSQ 326
           AIN+RL RAAAPR+ +Q
Sbjct: 308 AINDRLARAAAPRDNAQ 324


>gi|297183981|gb|ADI20101.1| putative translation factor (sua5) [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 318

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 130/327 (39%), Positives = 192/327 (58%), Gaps = 17/327 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T+S+    A + L +G  +A PTETVYGL  D+ N  A+ ++Y  KKRP  NPLI
Sbjct: 4   KILK-TNSDGYDTASKILQSGGLVAFPTETVYGLGADALNNNAVSKIYAAKKRPTFNPLI 62

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV ++   +K A  D  SL LA  FWPGPLT+V  + +  ++  L TA L+T  FRVP 
Sbjct: 63  VHVLNLETAQKFAIFDEDSLLLANKFWPGPLTIVAPIKADANLSKLITAGLETVAFRVPS 122

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               +KL++ +  P+A PSAN SG IS TN  H+  + +   I  I++GG   +GLESTI
Sbjct: 123 HPVARKLLKEFDGPVAAPSANPSGSISSTNAIHV-KNGLNGRIQAILNGGKCNVGLESTI 181

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + +    +  ILR GG+    +++ +  +L        +P +PG L SHYAP +++R+ A
Sbjct: 182 I-LSKSGECSILRSGGIPESEIEKVLGYKLS-SSKNPDSPIAPGQLSSHYAPNAKLRMNA 239

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASS 296
                 E +I FG+V        +  LNLS  G L EAA NLF+++ +AD+     G + 
Sbjct: 240 EKAYDDEYMIGFGDV--------VGQLNLSSQGDLTEAATNLFSFLHMADEDAITLGKTK 291

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRN 323
           IA + IP + LGIAIN+RL+RA+ P++
Sbjct: 292 IAVAPIPMNDLGIAINDRLKRASTPKD 318


>gi|261208265|ref|ZP_05922938.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6]
 gi|289565645|ref|ZP_06446091.1| translation factor SUA5 [Enterococcus faecium D344SRF]
 gi|294615327|ref|ZP_06695202.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636]
 gi|260077522|gb|EEW65240.1| sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium TC 6]
 gi|289162613|gb|EFD10467.1| translation factor SUA5 [Enterococcus faecium D344SRF]
 gi|291591830|gb|EFF23464.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium E1636]
          Length = 341

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 111/338 (32%), Positives = 173/338 (51%), Gaps = 21/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A E L AG  +A PTETVYGL  ++  P ++++++ +K RP  NPL
Sbjct: 1   METKR-YDETELQEAAEALKAGELVAFPTETVYGLGANALLPNSVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+
Sbjct: 60  IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+ES
Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177

Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P +
Sbjct: 178 TVLDLSDPAVAPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDT 237

Query: 235 QVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
           +V +             +   IR G +    I + +     ++ +     ++ AA  LF 
Sbjct: 238 RVLMVRDGDWSTAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 298 GLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 335


>gi|126726057|ref|ZP_01741899.1| Putative translation factor [Rhodobacterales bacterium HTCC2150]
 gi|126705261|gb|EBA04352.1| Putative translation factor [Rhodobacterales bacterium HTCC2150]
          Length = 320

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 131/327 (40%), Positives = 183/327 (55%), Gaps = 13/327 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+S  D+  L  +   L  G  +A PTETVYGL  D+RN  A+  ++  K RP+ NPLI
Sbjct: 4   QILSANDA-GLSLSSLILQRGGLVAFPTETVYGLGADARNDKAVAAIFAAKGRPSFNPLI 62

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV  +    + A   PL+  LA+ FWPGPL+LVL LL    +  L +A + +   R+P 
Sbjct: 63  VHVQSLPAATEFADFSPLAFKLAQAFWPGPLSLVLPLLKGGQLSHLVSAGMPSVAIRIPA 122

Query: 122 GFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L++ +G P+A PSAN SGQIS T   H+ ++ +   I  I+DGG+  +G+ESTI
Sbjct: 123 HPVAQGLLQVFGGPIAAPSANPSGQISPTTPGHV-TAGLKDRIDAILDGGLCSVGVESTI 181

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           + V  +  V +LRPGG+ +E + + I        +ET+   SPG L SHYAP++ + L  
Sbjct: 182 LGVSDDD-VTLLRPGGISVEQIAKVIGFTPTLTTNETTP-NSPGQLLSHYAPKADIVLNV 239

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA--SSIA 298
               P    + FGN        A  +LNLS  G L EAA NLF ++   D        IA
Sbjct: 240 TDPEPEMMSLGFGNAI------AHPTLNLSPKGDLTEAAANLFAHLHALDAMANAGQCIA 293

Query: 299 FSSIPNHGLGIAINNRLERAAAPRNQS 325
            + IP  GLG+AIN+RL RAAAPR+  
Sbjct: 294 VAPIPMTGLGLAINDRLTRAAAPRDGQ 320


>gi|302384783|ref|YP_003820605.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum
           WM1]
 gi|302195411|gb|ADL02982.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium saccharolyticum
           WM1]
          Length = 353

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 105/338 (31%), Positives = 160/338 (47%), Gaps = 28/338 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  L K  + +  G  +A PTETVYGL  ++ N  A  ++Y  K RP+ NPLI H+ D 
Sbjct: 15  EAELLIKPADIIRKGGLVAFPTETVYGLGGNALNEEAAGKIYAAKGRPSDNPLIAHIGDF 74

Query: 68  SMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             +    S  P +   L K FWPGPLTL+     +  +   +T  L T   R+P     +
Sbjct: 75  DDLPPLVSAIPEAGKKLMKAFWPGPLTLIFP--KSGLVPYGTTGGLDTVAVRMPVDPVAR 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T   H+    +  +I +I+DGG   IG+ESTI++V  
Sbjct: 133 ALIRLAGVPVAAPSANTSGRPSPTTADHVW-QDMNGKIDMIVDGGAVGIGVESTIIDVSG 191

Query: 186 EKKVRILRPGGLEIETLKRAISVELEY-------CVDETSTPQSPGMLKSHYAPRSQVRL 238
           +  V ILRPG +  E     + +E+          +     P++PGM   HYAP++++ L
Sbjct: 192 DGPV-ILRPGAITQEMASAVLGIEVPLDPAIVSGPLKADVRPKAPGMKYKHYAPKAELTL 250

Query: 239 ------------RAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLF 283
                         +        +R G +     K   +A +  ++    + +  A NL+
Sbjct: 251 VEGDAEAVIETINRLAEEKLTQGLRVGIICTEETKEAYHAGVVRSMGIRTREETIAHNLY 310

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             ++  DD  A  I   S   + LG AI NRL +AA  
Sbjct: 311 GVLREFDDLEADVIFSESFSRNHLGQAIMNRLTKAAGY 348


>gi|310644396|ref|YP_003949155.1| translation factor (sua5) [Paenibacillus polymyxa SC2]
 gi|309249347|gb|ADO58914.1| Putative translation factor (SUA5) [Paenibacillus polymyxa SC2]
          Length = 427

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 121/343 (35%), Positives = 174/343 (50%), Gaps = 28/343 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           IT    +R+A   L AG  +A PTETVYGL  D+R+  A+  ++  K RP+ NPLI H+S
Sbjct: 83  ITAEKGIREAAVLLQAGETVAFPTETVYGLGADARSTKAVEAVFAAKGRPSDNPLIVHIS 142

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D + +K   A ++  +  L   FWPGPLTLVL ++S   +    TA L T   R+P    
Sbjct: 143 DAAQLKGMVAEINDTARALMNTFWPGPLTLVLPVVSQA-LSSRVTAGLDTVGVRMPDHPI 201

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +LI   G PLA PSANRSG+ S T  +H+L   +   I  I+DGG + +GLEST+V V
Sbjct: 202 ALRLIAEAGCPLAAPSANRSGRPSPTLAQHVL-EDLKGRIGGILDGGPTGVGLESTVVQV 260

Query: 184 QCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETS---TPQSPGMLKSHYAPRSQ 235
             E  V ILRPGG+  E L        +   L +   + +    P+SPGM  +HYAPR +
Sbjct: 261 GDEGTVTILRPGGVTAEQLATVARSVVLDPALAHTPGQDADSLAPRSPGMKYTHYAPRGR 320

Query: 236 VRLR---AIHVNPREALIRFGNVPIKNIENAIISLN-------------LSKTGKLKEAA 279
           + +    +                 +    A+++ +             L K   L EAA
Sbjct: 321 LSVVQGPSSVEVTGWIRAALAEATARGERTAVLAFDDHAAGYAGERVYTLGKLDALHEAA 380

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             L++ ++  D+ G + I   + P  GLG A+ NRL +AA  R
Sbjct: 381 QRLYSVLRRCDEDGVTYILAEACPPKGLGDAVMNRLLKAAGHR 423


>gi|168177474|ref|ZP_02612138.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum NCTC
           2916]
 gi|226947365|ref|YP_002802456.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670936|gb|EDT82910.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum NCTC
           2916]
 gi|226842540|gb|ACO85206.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 351

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S 
Sbjct: 13  IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  ++K    +  ++  L   FWPGP+T++L       I   ++A L +   R+P     
Sbjct: 73  MKDIEKLVQKIPSVAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 IN-PPCILRPGGITLEMLKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYRKGDVVSIGSRKDLNTIAHNLFY 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345


>gi|222100697|ref|YP_002535265.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359]
 gi|221573087|gb|ACM23899.1| Translation factor SUA5 [Thermotoga neapolitana DSM 4359]
          Length = 335

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 109/322 (33%), Positives = 165/322 (51%), Gaps = 12/322 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  +LR+A + L  G  +  PTETVYG+  D+ N  A R+++EIK RPA NPLI H+   
Sbjct: 13  DERSLREAADLLKKGEVVVFPTETVYGIGADAYNEEACRKIFEIKGRPADNPLIVHICSF 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           S +++ A          + FWPGPLT++L    +  I  + TA L T   R+P      K
Sbjct: 73  SQLEEVADGYESFRDFLERFWPGPLTVILP-KKSQRISDVVTAGLPTVAVRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE  G P+A PSAN SG+ S T+V+H++   +   + LI+D G +  GLESTI+++  E
Sbjct: 132 LIEMLGDPIAAPSANLSGRPSATSVEHVVEDFMG-RVSLILDAGNTPFGLESTIIDLSRE 190

Query: 187 KKVRILRPGGLEIETLKRAI-SVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIH 242
           K V +LRPG +E+E LK     + +   V ++     P +PGM   HYAP   + L    
Sbjct: 191 KPV-LLRPGPVEVEKLKEFFPDLVVPDFVKKSEFRGKPLAPGMKYRHYAPSKPLILVENL 249

Query: 243 VNPREALIRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
              ++ L  F +  +  +E         + +         A NLF  ++ A+      I 
Sbjct: 250 EKMKDVLREFPDHVVICVEERKELYRDRIVIGSLKNPYSIAQNLFAALREAEKREKEYII 309

Query: 299 FSSIPNHGLGIAINNRLERAAA 320
              +   G+  A+ NRL +AA+
Sbjct: 310 VEGLEERGILFAVMNRLRKAAS 331


>gi|260587375|ref|ZP_05853288.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583]
 gi|331083675|ref|ZP_08332786.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542242|gb|EEX22811.1| Sua5/YciO/YrdC/YwlC family protein [Blautia hansenii DSM 20583]
 gi|330403886|gb|EGG83438.1| hypothetical protein HMPREF0992_01710 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 349

 Score =  338 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 104/335 (31%), Positives = 167/335 (49%), Gaps = 25/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A E L  G  +A PTETVYGL  D  N  +  ++Y  K RP+ NPLI H++D+
Sbjct: 14  DLQIMKEAGEILKNGGLVAFPTETVYGLGGDGLNARSSEKIYTAKGRPSDNPLIIHIADM 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             + K    +   +  LA+ FWPGPLT++     ++++   +T  L++   R+P      
Sbjct: 74  ESLNKIVRQIPEKAKLLAEKFWPGPLTMIFQ--KSSEVPYETTGGLESVAVRMPNHPVAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G  +A PSAN SG+ S T  +H+ +  +   I +I+DGG   IGLESTIV+   
Sbjct: 132 ALIQAGGGYIAAPSANTSGRPSPTKAEHV-AEDLSGRIDMIVDGGDVGIGLESTIVDFTE 190

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241
              V ILRPG +    ++  I  V ++  +   DE   P++PGM   HYAP++Q+ +   
Sbjct: 191 NIPV-ILRPGYINQAMIEAVIGSVRMDKGLLISDEKVKPKAPGMKYRHYAPKAQLVIVQG 249

Query: 242 HVNPREALI------------RFGNVP---IKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
           + N   A I            + G +     K++  A +  ++      +  A +LF  +
Sbjct: 250 NTNKVTAHINQICEALQQEGKKVGVIATDETKDLYQANVVKSIGTREDEEGIARHLFGIL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  D+     I   +     +G AI NRL +AA  
Sbjct: 310 REFDEEDVDCIYSEAFDTPKIGQAIMNRLLKAAGH 344


>gi|251779596|ref|ZP_04822516.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243083911|gb|EES49801.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 349

 Score =  338 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 164/334 (49%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + +  G  +A PTETVYGL  D+ N  A+++++  K RP  NPLI HV+  
Sbjct: 14  DEEKIKEAAKVIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           ++      +  ++  L   +WPGPLTL+L     + I  +++A+L T   R+P      K
Sbjct: 74  NIQSLVEDIPDIAQKLIDKYWPGPLTLIL--KKKSIIPNITSADLDTIGIRMPNNEIALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE     +A PSAN SG+ S T+V+  +   +  ++  I+ G  S IGLESTI++    
Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-EDLSGKVDCIVGGDKSNIGLESTILDCTVN 190

Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
             + +LRPGG+ +E LK       I   +     +   P++PGM   HYAP+++V++ + 
Sbjct: 191 PPL-VLRPGGITLEMLKEIDNRIEIDGAIMKKSTDDLKPKAPGMKYRHYAPKAKVKIISG 249

Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                   ++                     +   N  I + L     L   A NLF  +
Sbjct: 250 ERKKTIEKMKEMVDYYIDNNKKVCILTIEENEKEYNKGIKVVLGSRKNLLMVAQNLFESL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   +    G+GIAI NRL +AA 
Sbjct: 310 RKCDDLGADIILAEAYEEKGVGIAIMNRLNKAAG 343


>gi|237793460|ref|YP_002861012.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Ba4 str.
           657]
 gi|229261243|gb|ACQ52276.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum Ba4 str.
           657]
          Length = 351

 Score =  338 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 96/337 (28%), Positives = 163/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + +A + L  G  +  PTETVYGL  ++ +  A++ ++E K RP  NPLI H+S 
Sbjct: 13  IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFEAKGRPQDNPLIVHISK 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  ++K    +  ++  L   FWPGPLT++L       I   ++A L +   R+P     
Sbjct: 73  MKDIEKLVQKIPSVAEKLMDKFWPGPLTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E LK       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 IN-PPCILRPGGITLEMLKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAQKKVGIIATDETIDNYKKGDVVSIGSRKHLNTIAHNLFY 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345


>gi|220932631|ref|YP_002509539.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168]
 gi|219993941|gb|ACL70544.1| Sua5/YciO/YrdC/YwlC family protein [Halothermothrix orenii H 168]
          Length = 364

 Score =  338 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 167/343 (48%), Gaps = 27/343 (7%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+ + +++A+R+    L  G  +A PTETVYGL  D+ + +A++++++ K RP  NPLI 
Sbjct: 22  ILKLKENDAIREGASLLQKGEVVAFPTETVYGLGADATSESAVKKIFKAKGRPRDNPLIV 81

Query: 63  HVSDISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           H+ ++  +       +   +  L K FWPGPLTL+ +   T  I  ++TA L++   R P
Sbjct: 82  HIGEMDQLYDIIKNPLSDTTRRLIKHFWPGPLTLIFEKKET--IPGVTTAGLESVAVRFP 139

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + LI     P+A PSAN SG  S T  +H+    +   IP IIDGG S +G+EST
Sbjct: 140 DNPVARALIGLSSVPVAAPSANLSGSPSPTRAEHVFKD-LKGRIPFIIDGGPSSVGVEST 198

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET-STPQSPGMLKSHYAPRSQVRL 238
           +++++    V ILRPGG+  E +        E   +E    P SPGM   HY+PR+ + L
Sbjct: 199 VIDIRSGNPV-ILRPGGVTREEIAEVTGFSPENPDNEDRKKPLSPGMKYRHYSPRTPLYL 257

Query: 239 RAI-------HVNPREALIRFGNVPIKNIE------------NAIISLNLSKTGKLKEAA 279
             I        V  +        V     +              I  + +      K+ A
Sbjct: 258 IEIRDFDKIRDVGEKYKGYNLALVITSETDMVLKESLKSFSTTGIKKVVIGSRNDFKKIA 317

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             +F+ ++  D      I F +IP  GLG AI NRL +AA  +
Sbjct: 318 ACMFDILRNLDTDNIDLIFFETIPEKGLGEAIMNRLAKAATGK 360


>gi|81428744|ref|YP_395744.1| Sua5 family translation factor [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610386|emb|CAI55436.1| Putative translation factor, SUA5 family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 342

 Score =  338 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/343 (33%), Positives = 175/343 (51%), Gaps = 20/343 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+    T  N + +A   L+AG  ++ PTETVYGL  D+ NP A++++Y  K RP+ NPL
Sbjct: 1   METKRYT-VNQIEQAAAALNAGELVSFPTETVYGLGADATNPAAVKKVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+ +  V+ +A     +   L K FWPG LT++L L        + T  LKTA FR+
Sbjct: 60  IVHVASVETVEHYAVTSNPAFGQLVKAFWPGSLTIILPLKHGA-FDAVVTGGLKTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI+  G P+  PSAN SG+ S T   H+L   +  +I  +ID G + +GLES
Sbjct: 119 PDNQVTLSLIKAAGVPIVGPSANTSGKPSPTLADHVL-HDLTGKIAGVIDDGPTGVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236
           T++++     V ILRPG +  E ++R I   +  ++ V    TP++PGM   HYAP +QV
Sbjct: 178 TVIDLSVATPV-ILRPGVVTQEAIERVIGPIMTNKHKVGAAETPKAPGMKYKHYAPNAQV 236

Query: 237 RL-------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNY 285
            +        A      +  + FG + +  I      +       L E    A+ +LF  
Sbjct: 237 YIVANPDDFDAAIDWASQQAVPFGVMAVDTILEKQAKVRFKDQFSLGESVVTASQHLFEG 296

Query: 286 MKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           ++  D +     I        G+G+A  NRLE++A  +  S++
Sbjct: 297 LRYFDLNPEVKLILVQGFAKEGVGLAYMNRLEKSAGQKYFSKQ 339


>gi|194468252|ref|ZP_03074238.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri 100-23]
 gi|194453105|gb|EDX42003.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri 100-23]
          Length = 342

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 106/327 (32%), Positives = 171/327 (52%), Gaps = 19/327 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV+ I+MV
Sbjct: 10  EIAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAMV 69

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           +K+ A +   +  L   FWPG LT++L +     +    T  LKT  FR P C  T  LI
Sbjct: 70  EKYAAEIPDNARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLKTVAFRYPDCQPTLDLI 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++  +  
Sbjct: 129 EEAGVPMVGPSANTSGKPSPTTAQHVY-HDLHGKIAGIVDNGPTRVGVESTVLDMSTDHP 187

Query: 189 VRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           V ILRPG +  + +++ I       + V +  TP++PGM   HYAP++QV +     +  
Sbjct: 188 V-ILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYKHYAPKAQVYIVDEDTDWD 246

Query: 247 EALIRFGNVPI--------KNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDS-GA 294
           + +      P         K ++  ++ +N    S    +++A+  LF+ ++  DD    
Sbjct: 247 KVVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNI 306

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321
             I   + P H LG A  NRL ++A  
Sbjct: 307 KVIVTQAFPAHDLGGAYMNRLNKSAGG 333


>gi|302669642|ref|YP_003829602.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus
           B316]
 gi|302394115|gb|ADL33020.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio proteoclasticus
           B316]
          Length = 340

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 101/333 (30%), Positives = 162/333 (48%), Gaps = 25/333 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + +  G  +A PTETVYGL  D+ NP + +++Y  K RP+ NPLI HV+++  
Sbjct: 7   EGLKRAGQIIRDGGLVAFPTETVYGLGGDALNPMSSKKIYAAKGRPSDNPLIVHVANMDD 66

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +      V   +  LA  FWPGPLT++++      +   +T  L T   R+P      +L
Sbjct: 67  LAGIVKEVPEAARKLADAFWPGPLTMIMN--KNDKVPYETTGGLDTVAIRMPNNKIALEL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G  +A PSAN SG+ S T  ++ +   +  +I +IIDGG   IGLESTIV++    
Sbjct: 125 IRQSGGYIAAPSANTSGRPSPTVARYCV-EDLSGKIEMIIDGGQVGIGLESTIVDLTSPV 183

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            + ILRPG +  + LK  +  + ++  +     T  P++PGM   HYAP+  + +     
Sbjct: 184 PM-ILRPGYITAQMLKDVLGEISIDKTIIDSKSTERPKAPGMKYKHYAPKGDLMIVQGAQ 242

Query: 244 NPREALI------------RFGNVP---IKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
               + I            R G +     + +  A +  ++      +  A  LF  ++ 
Sbjct: 243 EQVVSYINEQSALAASEGKRVGIIATDTTRELYKADVVKSVGNRQDERTIAHELFKVLRE 302

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +   S  + G+G AI NRL +AA  
Sbjct: 303 FDDENIDVMFSESFDDSGIGQAIMNRLLKAAGH 335


>gi|148378148|ref|YP_001252689.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153934330|ref|YP_001382549.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936453|ref|YP_001386101.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           Hall]
 gi|148287632|emb|CAL81697.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152930374|gb|ABS35874.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932367|gb|ABS37866.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum A str.
           Hall]
          Length = 351

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 163/337 (48%), Gaps = 26/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + +A + L  G  +  PTETVYGL  ++ +  A++ +++ K RP  NPLI H+S 
Sbjct: 13  IDEHVISEAGDILRQGGLVVFPTETVYGLGANALDKNAVKGIFQAKGRPQDNPLIVHISK 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  ++K    +  ++  L   FWPGP+T++L       I   ++A L +   R+P     
Sbjct: 73  MKDIEKLVQKIPSVAEKLMDKFWPGPMTIIL--KKKDIIPNETSAGLDSIGIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            KLI   G P+A PSAN SG+ S T+V+  +   +  ++ +I+ G  S++G+EST+++  
Sbjct: 131 MKLISMAGVPIAAPSANLSGKPSPTDVETCI-EDLDGKVNIILGGDNSEVGVESTVIDCT 189

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPGG+ +E +K       I   +    D+   P++PGM   HYAP++ +++ 
Sbjct: 190 IN-PPCILRPGGITLEMVKEVDSNIYIDPAIMKKPDKDLKPKAPGMKYRHYAPKAPLKII 248

Query: 240 AIHVNPREALI------------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFN 284
              +N     I            + G +              +++     L   A NLF 
Sbjct: 249 KGDLNKTIEKINEMVQNYIDAEKKVGIIATDETIDNYRKGDVVSIGSRKDLNTIAHNLFY 308

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  D+     I   +     +G+AI NRL+++A  
Sbjct: 309 VLRSFDEKNVDLILSEAFEEKDMGVAIMNRLKKSAGY 345


>gi|291561899|emb|CBL40702.1| Sua5/YciO/YrdC/YwlC family protein [butyrate-producing bacterium
           SS3/4]
          Length = 356

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 108/333 (32%), Positives = 160/333 (48%), Gaps = 26/333 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L +A E L  G  +A PTETVYGL  ++ N  A +++Y  K RP+ NPLI H+S +  +
Sbjct: 23  GLLEAAEILKNGGLVAFPTETVYGLGANALNEEAAKKIYAAKGRPSDNPLIAHISCMEEL 82

Query: 71  KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
                  P +   LA+ +WPGPLT++        +   +T  L T   R+P       LI
Sbjct: 83  PAIVKEIPEAGRKLAEKYWPGPLTMIFP--KKDIVPYGTTGGLDTVAVRMPVDPVANCLI 140

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A PSAN SG+ S T  +H++   +  +I +IIDGG   IG+ESTIV+V  E  
Sbjct: 141 HLAGVPIAAPSANTSGRPSPTKAEHVI-EDMDGKIEMIIDGGAVGIGVESTIVDVSGEIP 199

Query: 189 VRILRPGGLEIETLKRAIS-VELEY----CVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             +LRPG + IE L+  +  V+++      V     P++PGM   HYAP++ + L    +
Sbjct: 200 -TLLRPGAITIEMLRETLGQVDIDPVILGPVSGDIKPKAPGMKYRHYAPKADMTLVEGDM 258

Query: 244 NPREALI------------RFGNVPIKNIENAIISLNL---SKTGKLKEAAFNLFNYMKI 288
           +   A I            + G +  +  ++     NL         +  A NLF  ++ 
Sbjct: 259 DKVVAYINEQTKKAEAEGKKVGIICTEESQDMYQGGNLEVIGSREHEETVAHNLFAVLRD 318

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            D      I   S     LG AI NRL +AA  
Sbjct: 319 FDARKVDCIFSESFSKDQLGQAIMNRLCKAAGY 351


>gi|147679163|ref|YP_001213378.1| putative translation factor [Pelotomaculum thermopropionicum SI]
 gi|146275260|dbj|BAF61009.1| putative translation factor [Pelotomaculum thermopropionicum SI]
          Length = 385

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 109/338 (32%), Positives = 166/338 (49%), Gaps = 27/338 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++ A+R+A   L  G  +A PTETVYGL  ++ +  A+ R++E K RP+ NPLI HV+  
Sbjct: 44  EAEAVREAGLILRGGGLVAFPTETVYGLGANALDGKAVARIFEAKGRPSDNPLIVHVAAA 103

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V      +   +  L ++FWPGPLTLVL   +   +    TA L T   R+P      
Sbjct: 104 EEVGALVRGISDRARLLMEIFWPGPLTLVLP--AGKAVPAGVTAGLDTVAVRMPDHPVAA 161

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T  +H+L   +   I  I+DGG + +G+EST+++V  
Sbjct: 162 ALIRAAGVPVAAPSANISGRPSPTTAEHVL-QDLNGRIEAILDGGPAGLGVESTVLDVTV 220

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTP-----QSPGMLKSHYAPRSQVRLR 239
              + ILRPGG+  E L+  +  VE++              +SPGM   HYAPR+ + L 
Sbjct: 221 PVPL-ILRPGGVTPEELREVLGTVEVDPSAAAGLGKAAGRYRSPGMKYIHYAPRAPLVLI 279

Query: 240 AIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
               +   A IR                      +  +A + +   + GK +  A  L+ 
Sbjct: 280 EGRPDAVAAKIRELAGEQQAAGRRVGILTYADSGDFSSAGVVVLAGQRGKPETVAAGLYA 339

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            ++  D+ G   I    +   G+G+A+ NRL +AA  R
Sbjct: 340 ALRRFDELGVDLILAEGVEEGGVGLAVMNRLRKAAGGR 377


>gi|71394063|gb|AAZ32102.1| putative translation factor [uncultured euryarchaeote Alv-FOS5]
          Length = 342

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 111/328 (33%), Positives = 169/328 (51%), Gaps = 22/328 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A   +  G  +A PTETVYGL  D+ N  A++R++E K RP  NPLI H++   
Sbjct: 16  DKKISPAALAIREGKLVAFPTETVYGLGADALNAEAVKRIFEAKGRPQDNPLIVHIAHEE 75

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +   A   P  +  L   FWPGPLTL+L       I   +TA L T   R+P     +K
Sbjct: 76  GIYNLAREVPRKAKDLIDRFWPGPLTLILKKSPI--IPDRTTAGLDTVAIRMPSHPIARK 133

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI     P+A PSAN SG+ S T  KH++   +  ++  IIDGG + +GLEST++++  +
Sbjct: 134 LILLSERPIAAPSANTSGKPSPTTGKHVI-DDLYGKVEYIIDGGPTNVGLESTVIDLTTD 192

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRAIH 242
             + +LRPGG+ +  L+  +  V++   V     T  P+SPGM   HYAP +++ L    
Sbjct: 193 PPM-LLRPGGVTLGQLEEVLGKVDVHPAVFGKRITGNPRSPGMKYRHYAPDARLILVEGP 251

Query: 243 VNPREALI----------RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
            +     I          + G + +    N  I +NL K+   +E A  +F+ ++  D  
Sbjct: 252 RDKVVKRINEMLGSLGTNKIGVLAVYGEYNQGIVVNLGKST--EEVARKVFDALRDLDRR 309

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           GA  I    IP+  LG+A+ NRL +AA+
Sbjct: 310 GADIIIAEGIPDTELGLAVMNRLRKAAS 337


>gi|260663284|ref|ZP_05864175.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum
           28-3-CHN]
 gi|260552136|gb|EEX25188.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum
           28-3-CHN]
          Length = 342

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 105/337 (31%), Positives = 165/337 (48%), Gaps = 20/337 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ + I     +++A + + AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPL
Sbjct: 1   MKTV-IFQPAEVKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HVS ++MV+   A +   +  L   FWPG LT++L     T +  + T  L T  FR 
Sbjct: 60  IVHVSSLAMVEHFAAEIPAKAKQLMDRFWPGSLTIILRFKPGT-LSKMVTGGLDTVAFRF 118

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P C  T  LI   G P+  PSAN SG+ S T   H+    +  +I  IID G +++G+ES
Sbjct: 119 PDCQPTLDLISQAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQV 236
           T++++   + V ILRPG +  + ++  I       + V +   P++PGM   HYAP +QV
Sbjct: 178 TVLDMSTSQPV-ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQV 236

Query: 237 RLRAIHVNPREALIRFG----NVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNY 285
            +     +  E           V +   +  + +   S           ++EA+ +LF  
Sbjct: 237 YIVDPADDWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEG 296

Query: 286 MKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D       I        GLG A  NRL ++A  
Sbjct: 297 LRDFDNQEEIHQIFCQGFEPTGLGAAYMNRLNKSAGG 333


>gi|169826582|ref|YP_001696740.1| hypothetical protein Bsph_0998 [Lysinibacillus sphaericus C3-41]
 gi|168991070|gb|ACA38610.1| Hypothetical ywlC protein [Lysinibacillus sphaericus C3-41]
          Length = 344

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 24/347 (6%)

Query: 1   MQ-IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+ +  + DSN        +A + L+AG  +A PTETVYGL   + N TA+++++E K R
Sbjct: 1   METVCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAVATNDTAVKKIFEAKGR 60

Query: 55  PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           P+ NPLI HV     V  +   +  ++     LFWPGPLTLV+       +    TA L 
Sbjct: 61  PSDNPLIVHVGTKEEVTNYIEHISEIAKQCIDLFWPGPLTLVMPAKPNV-LAQSVTAGLS 119

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P       L++    PLA PSANRSG+ S T   H+L   +   IP I+DGG +
Sbjct: 120 TVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAIHVL-DDLGGYIPYILDGGST 178

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE---TSTPQSPGMLKSH 229
            IGLEST+++V  E  V ILRPGG+  E L+  I   ++    E     TP++PGM  +H
Sbjct: 179 GIGLESTVLDVTHEPPV-ILRPGGITKEILEATIGPVIQPTKIEQKLEETPKAPGMKYTH 237

Query: 230 YAPRSQVRLRAIHVNP--------REALIRFGNVPIKNIEN--AIISLNLSKTGKLKEAA 279
           YAP + V L   H           ++       +  +N ++  A    ++ + G  ++  
Sbjct: 238 YAPNAPVYLINCHDGEVSEAVQQLQQQGHEVALLAPQNFQHIKADFYFSVGEEGSKEDMG 297

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
            +L++ ++  D + A+ I  ++    G+G AI NRLE+A+  +  S 
Sbjct: 298 ASLYHALRACDKTTATVILATTTSTEGVGAAIMNRLEKASGGKWYSL 344


>gi|167768294|ref|ZP_02440347.1| hypothetical protein CLOSS21_02850 [Clostridium sp. SS2/1]
 gi|317497775|ref|ZP_07956088.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167709818|gb|EDS20397.1| hypothetical protein CLOSS21_02850 [Clostridium sp. SS2/1]
 gi|291560271|emb|CBL39071.1| translation factor SUA5 [butyrate-producing bacterium SSC/2]
 gi|316894964|gb|EFV17133.1| Sua5/YciO/YrdC/YwlC family protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 350

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/343 (28%), Positives = 166/343 (48%), Gaps = 27/343 (7%)

Query: 2   QIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +I ++ D    + +A E + AG  +A PTETVYGL  +   P A +++Y  K RP+ NPL
Sbjct: 7   KINNMEDCKKDMEEAGELIKAGELVAFPTETVYGLGGNGLLPDAAKKIYAAKGRPSDNPL 66

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV D+ MV+     +   +    + FWPGP+T++L       +    T  L T   R+
Sbjct: 67  ILHVCDMQMVESLVKEIPDNARRAMEHFWPGPMTVILQ--KADQVPDCVTGGLDTVAIRM 124

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +LI   G P+A PSAN SG+ S T  +H++   +  +IP+I+DGG   +G+ES
Sbjct: 125 PDHPVALELIRRSGVPIAAPSANTSGRPSPTKAEHVM-EDLHGKIPMILDGGAVMVGVES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRS 234
           TI++      V ILRPG +  E+++  +  E+         +   P++PGM   HYAP++
Sbjct: 184 TIIDFTEIVPV-ILRPGWITKESMEEFLGCEVLMNTSLKASDHGIPRAPGMKYKHYAPKA 242

Query: 235 QVRL-------------RAIHVNPREALIRFGNVP---IKNIENAIISLNLSKTGKLKEA 278
           ++ L               +    +E   + G +     K++  A   +++ +   L+  
Sbjct: 243 EMVLVLGDDQEKVVNHINQLAKEQKEQGKKIGIIASDETKDLYQADEVVSVGQRAHLETV 302

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             +L++ ++  D      I         L  AI NR+ +AA  
Sbjct: 303 TAHLYDVLREFDHKDVDMIYSEGFEGEPLSEAIMNRMVKAAGH 345


>gi|257885491|ref|ZP_05665144.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501]
 gi|257821347|gb|EEV48477.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,501]
          Length = 331

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 108/327 (33%), Positives = 170/327 (51%), Gaps = 20/327 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L AG  +A PTETVYGL  ++  P A+++++ +K RP  NPLI HV+    VK
Sbjct: 1   MQEAAEALKAGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVK 60

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T ++I+
Sbjct: 61  EYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIK 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK- 188
             G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++      
Sbjct: 120 LSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAM 178

Query: 189 VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI---- 241
             ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +       
Sbjct: 179 PMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWS 238

Query: 242 --HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SG 293
                 +   IR G +    I + +     ++ +     ++ AA  LF  ++  D+   G
Sbjct: 239 TAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLG 298

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I     P  GLG A  NRL++AA 
Sbjct: 299 LDLIFVQVYPETGLGNAYMNRLKKAAG 325


>gi|255263958|ref|ZP_05343300.1| Sua5/YciO/YrdC family protein [Thalassiobium sp. R2A62]
 gi|255106293|gb|EET48967.1| Sua5/YciO/YrdC family protein [Thalassiobium sp. R2A62]
          Length = 354

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 135/313 (43%), Positives = 181/313 (57%), Gaps = 13/313 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ +A   L AG  +A+PTETVYGL  D+RN TA   +YE K RP+ NPLI HV+D+S  
Sbjct: 53  SISRAAALLQAGGLVALPTETVYGLGADARNGTACAGIYEAKGRPSFNPLIVHVADVSHA 112

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
           +  A    ++  LA  FWPGPLTLVL L     I  L TA L T   RVP    T+ L+ 
Sbjct: 113 RHFAVFSDVAEVLAATFWPGPLTLVLPLRPDAVIASLVTAGLHTVAIRVPRHPVTRDLLA 172

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+A PSAN SG+IS T   H++   +   I  +I+ G S +G+ESTI++       
Sbjct: 173 AFGGPIAAPSANPSGRISATTPDHVI-DGLDGRIDAVIEAGASSVGVESTIISCV--DTP 229

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LR GGL +  ++  +   + +     +T  +PG L SHYAP+ +VRL A H    E L
Sbjct: 230 MLLRQGGLPVSEIEAVLDRPIGFDTS-PATLAAPGQLASHYAPKGRVRLNANHAIGDEIL 288

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG+V           L LS+TG L EAA  LF  +   D  GA++IA + IP HGLG 
Sbjct: 289 LGFGDVTGD--------LTLSETGDLVEAARVLFRRLHELDAMGATAIAVAPIPEHGLGA 340

Query: 310 AINNRLERAAAPR 322
           AIN+RL RAAAPR
Sbjct: 341 AINDRLRRAAAPR 353


>gi|288931240|ref|YP_003435300.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642]
 gi|288893488|gb|ADC65025.1| Sua5/YciO/YrdC/YwlC family protein [Ferroglobus placidus DSM 10642]
          Length = 334

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 168/324 (51%), Gaps = 24/324 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +  A E +  G  +A PTETVYGL  D+ N  A+R+++E+K RPA NPLI HVS +
Sbjct: 16  EDDKIGIAAEEIKKGNLVAFPTETVYGLGADALNEKAVRKIFEVKGRPADNPLIVHVSSV 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             + + A  + ++  L   F+PGPLTLV+       +  ++TA L T   R+P      K
Sbjct: 76  DQIYEIAQPNEIAKKLIDAFFPGPLTLVM---KNKKVPKITTAGLDTVAVRMPDHKVALK 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE    P+A PSAN+SG+ S T  +H+L   +   + +IIDGG +KIGLEST+V+    
Sbjct: 133 LIELSETPIAAPSANKSGKPSPTKAEHVL-EDLGNLVDVIIDGGETKIGLESTVVD-TTV 190

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-------- 238
             V ILRPG +  E L+  + V+     ++ S  +SPGM   HYAP ++  +        
Sbjct: 191 YPVEILRPGAITKEELEEYVDVK---YAEDFSVAKSPGMKYKHYAPDAETIVLVGKNFLK 247

Query: 239 ----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
                A     +   +    + ++   N +I  N  +   L+E A NLF  ++  D    
Sbjct: 248 KATQIAEDFVKKGYRVGVAGLNLEEKRNDVIYKNFGR--NLEEMAKNLFKVLRELDKE-C 304

Query: 295 SSIAFSSIPNHGLGIAINNRLERA 318
             I    +   G+G AI NRL +A
Sbjct: 305 DVIIVQGVEEKGIGKAIMNRLYKA 328


>gi|332971797|gb|EGK10745.1| Sua5/YciO/YrdC/YwlC family protein [Desmospora sp. 8437]
          Length = 361

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/343 (32%), Positives = 174/343 (50%), Gaps = 26/343 (7%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           QI   TD +    +R+A   L  G  +A PTETVYGL  D+ +P A+  +Y  K RP+ N
Sbjct: 16  QIDGATDLDQNPVIREAAALLREGHLVAFPTETVYGLGADATDPDAVASIYRAKGRPSDN 75

Query: 59  PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI H++D   + +     P     LA+ FWPGPLTL+L      ++ P  TA L T   
Sbjct: 76  PLIVHLADEQGLSEWVREIPEPGRLLARRFWPGPLTLILPHRG--NLAPQVTAGLPTVGV 133

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       L++  G P+A PSANRSG+ S T   H+ +  +   I  I+DGG++ +G+
Sbjct: 134 RIPSHPVALALLKNCGLPVAAPSANRSGKPSPTRAGHVWTD-LGGRIDAILDGGVTGVGV 192

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDET-STPQSPGMLKSHYAPRS 234
           EST+V+V     V +LRPGG+ +E L+  +  V ++  + E   +P+SPGM   HYAP  
Sbjct: 193 ESTVVDVTVNPPV-LLRPGGVTLEMLREVVREVRVDPGLREEWESPRSPGMKYRHYAPGG 251

Query: 235 QV------------RLRAIHVNPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAA 279
           ++            R++ +     ++  + G +  +    +  A   +      +    A
Sbjct: 252 EMWVITGEGEAQVSRIQRMADEAMQSGKKTGILCTEEHASLYRADWIVVCGTRSRPDTIA 311

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             L+  ++  D+ GA  IA    P  G+  ++ NRL +AA  R
Sbjct: 312 RELYGALRRFDEVGAQWIAAEGFPPRGVLHSVMNRLSKAAEGR 354


>gi|308071165|ref|YP_003872770.1| hypothetical protein PPE_04472 [Paenibacillus polymyxa E681]
 gi|305860444|gb|ADM72232.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 415

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 116/344 (33%), Positives = 168/344 (48%), Gaps = 28/344 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I     +R+A   L AG  +A PTETVYGL  D+R+  A+  ++  K RP+ NPLI H+
Sbjct: 70  RIAAEKGIREASVLLQAGETVAFPTETVYGLGADARSTKAVEAVFVAKGRPSDNPLIVHI 129

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           SD   ++     ++  +  L  +FWPGPLTLVL ++    +    TA L T   R+P   
Sbjct: 130 SDADQLEGMVSEINDTARELMNMFWPGPLTLVLPVVPQA-LSSRVTAGLDTVGVRMPDHP 188

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              +LI   G PLA PSANRSG+ S T  +H+    +   I  I+DGG + +GLEST+V 
Sbjct: 189 IALRLIAEAGCPLAAPSANRSGRPSPTLARHV-REDLEGRIGGILDGGPTGVGLESTVVQ 247

Query: 183 VQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETS---TPQSPGMLKSHYAPRS 234
              +  V ILRPGG+  E L        +   L     E +    P+SPGM  +HYAPR 
Sbjct: 248 AGDDGTVTILRPGGVTAEQLATVARAVVLDPALAATPGEDADSPAPRSPGMKYTHYAPRG 307

Query: 235 QVRLRAIHVNPR---EALIRFGNVPIKNIENAIISLN-------------LSKTGKLKEA 278
           ++ +     + +              +    A+++ +             L K   L EA
Sbjct: 308 RLSVVQGPSSVKVTGWIRAALAEASARGERTAVLAFDEHAAGYAGERVYTLGKLDALHEA 367

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           A  L+  ++  D+ G + I   S P  GLG A+ NRL +AA  R
Sbjct: 368 AQRLYGVLRRCDEDGVTYILSESCPPKGLGDAVMNRLLKAAGHR 411


>gi|188589112|ref|YP_001919885.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499393|gb|ACD52529.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 349

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 164/334 (49%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + +  G  +A PTETVYGL  D+ N  A+++++  K RP  NPLI HV+  
Sbjct: 14  DEEKIKEAAKVIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           ++      +  ++  L   +WPGPLTL+L     + I  +++A+L T   R+P      K
Sbjct: 74  NIQSLVEDIPDIAQKLIDKYWPGPLTLIL--KKKSIIPNITSADLDTIGIRMPNNEIALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE     +A PSAN SG+ S T+V+  +   +  ++  I+ G  S IGLESTI++    
Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-EDLSGKVDCIVGGDKSNIGLESTILDCTVN 190

Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
             + +LRPGG+ +E LK       I   +     +   P++PGM   HYAP+++V++ + 
Sbjct: 191 PPL-VLRPGGITLEMLKDIDNRIEIDGAIMKKSTDDLKPKAPGMKYRHYAPKAKVKIISG 249

Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                   ++                     +   N  I + L     L   A NLF  +
Sbjct: 250 ERKKTIEKMKEMVDYYIDNNKKVCILTIEENEKEYNKGIKVVLGSRENLLMVAQNLFESL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   +    G+GIAI NRL +AA 
Sbjct: 310 RKCDDLGADIILAEAYEEKGVGIAIMNRLNKAAG 343


>gi|332653079|ref|ZP_08418824.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcaceae bacterium D16]
 gi|332518225|gb|EGJ47828.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcaceae bacterium D16]
          Length = 341

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 104/340 (30%), Positives = 168/340 (49%), Gaps = 25/340 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    +T  + + +A   L  G  + IPTETVYGL  +  N  A+  ++E K RP  NPL
Sbjct: 1   MNTKRLT-EHDIDEAAAILRDGGLLGIPTETVYGLGANGLNEEAVAHIFEAKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+ D S ++++    PL +  LA+ +WPGP+T++L       +    TA L T   R 
Sbjct: 60  ILHIPDASWLERYCKDIPLTAYQLAEAYWPGPMTMILKRKDI--VPDAVTAGLDTVGMRC 117

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     +++I   G P+A PS N SG+ S T  +H+L   +  +I  I+DGG   +G+ES
Sbjct: 118 PAHPLCREIIAASGVPVAAPSGNTSGRPSPTTAQHML-EDMDGKIDAIVDGGSCSVGVES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPR 233
           TI+++  E   R+LRPGG+ +E L+  +        +   +     P++PGM   HYAP+
Sbjct: 177 TIIDLT-ETPARLLRPGGITLEQLEAVLGEVAVDPAVTRLMGAGEQPKAPGMKYRHYAPK 235

Query: 234 SQVRLR-----------AIHVNPREALIRFGNVPIKNIENAI--ISLNLSKTGKLKEAAF 280
           + V +            A H    + +I F          +     ++L   G  +E A 
Sbjct: 236 APVTVVTGDPKKSAEYIASHAGAEDGIICFDEFLPLFTRRSETRPVMDLGPAGDKEEQAR 295

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++F+ ++  D +   +I        G+G+AI NRL +AA 
Sbjct: 296 HIFDALRSFDHTSVPAIWAQCPDTTGIGLAIANRLNKAAG 335


>gi|281411518|ref|YP_003345597.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10]
 gi|281372621|gb|ADA66183.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga naphthophila RKU-10]
          Length = 335

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/321 (35%), Positives = 169/321 (52%), Gaps = 12/321 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   L++A E L  G  I  PTETVYG+  D+ N  A ++++E+K RPA NPLI H+  +
Sbjct: 13  NEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSL 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A      L   K FWPGPLT++L    +  I P+ TA L T   R+P      K
Sbjct: 73  EQLEEIAEGYEPHLDFLKKFWPGPLTVIL-RKKSEKIPPVVTAGLPTVAVRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE +G+P+A PSAN SG+ S TNVKH++   + K + LIID G +  GLESTIV++  E
Sbjct: 132 LIELFGNPIAAPSANISGRPSATNVKHVVEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190

Query: 187 KKVRILRPGGLEIETLKRAI-SVELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRAIH 242
           K V +LRPG +E+E LK     + +   V +      P +PGM   HYAP   + L    
Sbjct: 191 KPV-LLRPGPVEVERLKELFPGLVVPDFVRKGNFKGRPLAPGMKYRHYAPLKPLILVEDL 249

Query: 243 VNPREALIRFGNVPI----KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
               E L ++ +  +    +  E     + +    K    A N+F+ ++ A+  G   I 
Sbjct: 250 TKMEEVLKKYPDHVVICVQERKELYDDRIVVGSLKKPYSIAQNIFSALREAEKMGKEYII 309

Query: 299 FSSIPNHGLGIAINNRLERAA 319
                  G+  A+ NRL +AA
Sbjct: 310 VEGFEERGILFAVMNRLRKAA 330


>gi|187933769|ref|YP_001884698.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721922|gb|ACD23143.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium botulinum B str.
           Eklund 17B]
          Length = 349

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 162/334 (48%), Gaps = 25/334 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A + +  G  +A PTETVYGL  D+ N  A+++++  K RP  NPLI HV+  
Sbjct: 14  DEEKMKEAAQIIKDGGIVAFPTETVYGLGSDALNEDAVKKIFIAKGRPQDNPLIVHVASK 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           ++      +  ++  L   +WPGPLTL+L     + I  +++ANL T   R+P      K
Sbjct: 74  NIQSLVEDIPDIAQRLIDKYWPGPLTLIL--KKKSIIPDMTSANLDTIGIRMPNNEIALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE     +A PSAN SG+ S T+V+  +   +   +  I+ G  S IGLESTI++    
Sbjct: 132 LIEMSNTVIAAPSANISGRPSPTDVERCI-DDLSGRVDCIVGGKKSDIGLESTILDCTVN 190

Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
             + +LRPGG+ +E LK       I   +         P++PGM   HYAP+++V++ + 
Sbjct: 191 PPI-VLRPGGITLEMLKEIDNRIEIDGAIMKKSTGDLKPKAPGMKYRHYAPKAKVKIISG 249

Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                   I+                     +   N  I + L     L   A NLF  +
Sbjct: 250 ERKKTIEKIKEIVDYYIDNNKKVCILTIQENEKEYNKGIKVVLGSKENLLMVAQNLFESL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   +    G+GIAI NRL +AA 
Sbjct: 310 RKCDDLGADVILAEAYEEKGVGIAIMNRLNKAAG 343


>gi|83591784|ref|YP_425536.1| translation factor SUA5 [Rhodospirillum rubrum ATCC 11170]
 gi|83574698|gb|ABC21249.1| translation factor SUA5 [Rhodospirillum rubrum ATCC 11170]
          Length = 322

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 127/324 (39%), Positives = 181/324 (55%), Gaps = 17/324 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  AL +A   L AG  +A PTETVYGL  ++ + TA+  +Y  K RP+ NPLI H+ D+
Sbjct: 8   EGAALAQAARILAAGGLVAFPTETVYGLGANALDDTAVASIYAAKGRPSFNPLIVHLPDL 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              + H +VD  +  LA  FWPGPLTLVL   +   +  L +A L TA  R P      +
Sbjct: 68  DAARAHVAVDGRAERLAAAFWPGPLTLVLPRRAGCRLSLLVSAGLDTAAIRCPDHPLALE 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+     PLA PSAN SG +S T   H+    +   + L++DGG   +GLEST++++   
Sbjct: 128 LLRACALPLAAPSANPSGAVSPTTAAHV-REGLGGRVDLVLDGGACGVGLESTVLDLSTP 186

Query: 187 KKVRILRPGGLEIETLKRAISVELEYC---VDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + + +LRPG +    L   +   ++       + + P+SPG L SHYAP ++VRL A  +
Sbjct: 187 RAL-LLRPGAISRAMLAEVLGEPVDRPSATPSDPTAPRSPGQLLSHYAPTARVRLNASAI 245

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P E L+ FG V       A  +L+LS +G L+EAA NLF+ ++  D    ++IA S IP
Sbjct: 246 GPGEVLLGFGPV-------AGATLSLSPSGDLREAAANLFSMLRALDADHPATIAVSPIP 298

Query: 304 NH----GLGIAINNRLERAAAPRN 323
                 GL  AIN+RL RAAAPR 
Sbjct: 299 ETDPGDGLAAAINDRLRRAAAPRG 322


>gi|153816408|ref|ZP_01969076.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756]
 gi|317502463|ref|ZP_07960626.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089289|ref|ZP_08338191.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846243|gb|EDK23161.1| hypothetical protein RUMTOR_02661 [Ruminococcus torques ATCC 27756]
 gi|316896148|gb|EFV18256.1| hypothetical protein HMPREF1026_02571 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405841|gb|EGG85370.1| hypothetical protein HMPREF1025_01774 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 507

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 156/336 (46%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +   + +A   L  G  +A PTETVYGL  D+    A  + Y  K RP+ NPLI H+++
Sbjct: 13  INEEIIEEAGMILKNGGLVAFPTETVYGLGADALKEEAAMKTYAAKGRPSDNPLIVHIAE 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
              ++K A ++   +  LA  FWPGPLT++ +   +  +   +T  L T   R+P     
Sbjct: 73  YEDLRKIAVNIPAETDALAAHFWPGPLTMIFE--KSEVVPYGTTGGLDTVAVRMPTDEVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G  ++ PSAN SG+ S T  +H+ +  +  +I +I+DGG  +IGLESTI+++ 
Sbjct: 131 RALIRAAGGFVSAPSANTSGRPSPTLAEHV-AEDLGGKIDMILDGGAVEIGLESTILDMT 189

Query: 185 CEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
               + ILRPG +  E  +  I      E     +    P++PGM   HYAP++++ +  
Sbjct: 190 VTPPM-ILRPGAITAEMFEEVIGKVDVDETLLVAESEKAPKAPGMKYRHYAPKAKLMIVE 248

Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
             +      IR                            +  N+      K  A NL+  
Sbjct: 249 GDLREEIFAIRQLAYKAYKEGRKVGVIATTETLPFYKYGVVKNIGTRENEKTIARNLYRV 308

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D+     I   S    G+G AI NRLE+AA  
Sbjct: 309 LREFDEEDVEEIYSESFAAQGIGKAIMNRLEKAAGH 344


>gi|170287882|ref|YP_001738120.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2]
 gi|170175385|gb|ACB08437.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga sp. RQ2]
          Length = 335

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 117/321 (36%), Positives = 168/321 (52%), Gaps = 12/321 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  I  PTETVYG+  D+ N  A ++++E+K RPA NPLI H+   
Sbjct: 13  DEKVLKEAVELLQNGEVIIFPTETVYGIGADAYNEEACKKIFELKGRPADNPLIVHIHSF 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A      L   K FWPGPLT++L    +  I P+ TA L T   R+P      K
Sbjct: 73  EQLEEIAEGYEPHLDFLKKFWPGPLTVIL-RKKSEKIPPVVTAGLPTVAMRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE +GHP+A PSAN SG+ S TNVKH++   + K + LIID G +  GLESTIV++  E
Sbjct: 132 LIELFGHPIAAPSANISGRPSATNVKHVVEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190

Query: 187 KKVRILRPGGLEIETLKRAI-SVELEYCVDET---STPQSPGMLKSHYAPRSQVRLRAIH 242
           K V +LRPG +E+E LK     + +   V +      P +PGM   HYAP   + L    
Sbjct: 191 KPV-LLRPGPVEVERLKELFPGLVVPDFVRKGNFEGRPLAPGMKYRHYAPLKPLILVEDL 249

Query: 243 VNPREALIRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
               E L ++ +  +  +E         + +    K    A N+F+ ++ A+  G   I 
Sbjct: 250 TKMEEVLKKYPDHVVICVEERKELYDDRIVVGSLKKPYSIAQNIFSALREAEKMGKEYII 309

Query: 299 FSSIPNHGLGIAINNRLERAA 319
                  G+  A+ NRL +AA
Sbjct: 310 VEGFEERGILFAVMNRLRKAA 330


>gi|110800830|ref|YP_696878.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens ATCC
           13124]
 gi|168210129|ref|ZP_02635754.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|110675477|gb|ABG84464.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens ATCC
           13124]
 gi|170711785|gb|EDT23967.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens B str.
           ATCC 3626]
          Length = 350

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%)

Query: 2   QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           Q +   D +   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NP
Sbjct: 6   QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65

Query: 60  LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D   + K+ A +   +  L   FWPGPLT++L       +  +++A L T   R
Sbjct: 66  LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+E
Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232
           STIV+   E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP
Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241

Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277
           +++VR            ++ I  N  +  ++ G +         N  I  +L     L  
Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTS 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              NLF  ++  DD G   I   +     LG+AI NRL+++  
Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344


>gi|257880059|ref|ZP_05659712.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933]
 gi|257891150|ref|ZP_05670803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410]
 gi|257893964|ref|ZP_05673617.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408]
 gi|260560328|ref|ZP_05832504.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68]
 gi|257814287|gb|EEV43045.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,230,933]
 gi|257827510|gb|EEV54136.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,410]
 gi|257830343|gb|EEV56950.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,231,408]
 gi|260073673|gb|EEW61999.1| sua5/yciO/yrdC/ywlC family protein [Enterococcus faecium C68]
          Length = 331

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 108/327 (33%), Positives = 169/327 (51%), Gaps = 20/327 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPLI HV+    VK
Sbjct: 1   MQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPLIVHVASFEQVK 60

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+P    T ++IE
Sbjct: 61  EYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRIPDNKKTLEVIE 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK- 188
             G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+EST++++      
Sbjct: 120 LSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAM 178

Query: 189 VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI---- 241
             ILRPG +  E ++  I   +   ++ V E  TP++PGM   HY+P ++V +       
Sbjct: 179 PMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWS 238

Query: 242 --HVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SG 293
                 +   IR G +    I + +     ++ +     ++ AA  LF  ++  D+   G
Sbjct: 239 TAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLG 298

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I     P  GLG A  NRL++AA 
Sbjct: 299 LDLIFVQVYPETGLGNAYMNRLKKAAG 325


>gi|182623990|ref|ZP_02951778.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens D str.
           JGS1721]
 gi|177910883|gb|EDT73237.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens D str.
           JGS1721]
          Length = 350

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 107/343 (31%), Positives = 169/343 (49%), Gaps = 28/343 (8%)

Query: 2   QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           Q +   D +   L +A E +  G     PTETVYGL  ++ +  A+++++  K RP  NP
Sbjct: 6   QFIKDIDKDIKYLEEAAEIIKNGGIGVFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65

Query: 60  LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D   + K+ A +   +  L   FWPGPLT++L       +  +++A L T   R
Sbjct: 66  LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+E
Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232
           STIV+   E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP
Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241

Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277
           +++VR            ++ I  N  +  ++ G +         N  I  +L     L  
Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTS 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              NLF  ++  DD G   I   +     LG+AI NRL+++  
Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344


>gi|110802725|ref|YP_699474.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens SM101]
 gi|110683226|gb|ABG86596.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens SM101]
          Length = 350

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%)

Query: 2   QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           Q +   D +   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NP
Sbjct: 6   QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65

Query: 60  LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D   + K+ A +   +  L   FWPGPLT++L       +  +++A L T   R
Sbjct: 66  LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+E
Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232
           STIV+   E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP
Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241

Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277
           +++VR            ++ I  N  +  ++ G +         N  I  +L     L  
Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYNEGIVKSLGTREDLTS 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              NLF  ++  DD G   I   +     LG+AI NRL+++  
Sbjct: 302 ITRNLFETLRAFDDLGVDIIITEAFEEKDLGVAIMNRLKKSCG 344


>gi|291520269|emb|CBK75490.1| Sua5/YciO/YrdC/YwlC family protein [Butyrivibrio fibrisolvens 16/4]
          Length = 353

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 164/353 (46%), Gaps = 33/353 (9%)

Query: 2   QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +IM +++       +R+A E L  G  +A PTETVYGL  D+ +  A R++Y+ K RP+ 
Sbjct: 4   RIMDVSEEPINIEFIREASEILKNGGLVAFPTETVYGLGGDATDKEASRKIYQAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++    +++  +  P  +  LA  FWPGPLT+V +      I   +T  L T  
Sbjct: 64  NPLIVHIAKFEQLEQITTDLPETAKKLADAFWPGPLTMVCN--KNEVIPYETTGGLDTVA 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       LIE  G  +A PSAN SG+ S T   H+    +  +I  I+DGG   IG
Sbjct: 122 VRMPNNPVALALIEESGCMIAAPSANTSGRPSPTKASHVY-EDLSGKIEAILDGGPVDIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS--------VELEYCVDETSTPQSPGMLK 227
           LESTIV++  E  V ILRPG + ++ LK  +         V  +      + P++PGM  
Sbjct: 181 LESTIVDLT-EDIVTILRPGYINMDMLKEVVGEVRMDPGIVYNDKGTTSGAKPKAPGMRY 239

Query: 228 SHYAPRSQVRLRAIHVN------------PREALIRFGNVPIKNI---ENAIISLNLSKT 272
            HYAP+  + + +   N             R    + G +              L +   
Sbjct: 240 KHYAPKGDLTIVSGEENKVVSTINKLTADKRAEGKKVGIIATSATAGRYEQGEVLIIGDR 299

Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
              +  A NL++ ++  D+     I   S     +G AI NRL +AA  +   
Sbjct: 300 EDEQSIAHNLYDILRQFDELDVDIIYSESFATPKIGQAIMNRLLKAAGQKTIE 352


>gi|83591211|ref|YP_431220.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073]
 gi|83574125|gb|ABC20677.1| translation factor SUA5 [Moorella thermoacetica ATCC 39073]
          Length = 352

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 109/335 (32%), Positives = 164/335 (48%), Gaps = 28/335 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A + L  G  +A PTETVYGL  ++ +  A+RR++  K RPA NPLI H++    V+
Sbjct: 18  IRLAAKILARGGVVAFPTETVYGLGANALDGRAVRRIFRAKGRPADNPLIVHIASFQDVQ 77

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              A + P +  L + FWPGPLTL++    +  I    TA L T   R+P     + LI 
Sbjct: 78  DLVAYLPPRATLLMQRFWPGPLTLIMPR--SDLIPDEVTAGLDTVGLRMPSHPVAQALIR 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T  +H+L   +  +I  +IDGG S +G+EST++++      
Sbjct: 136 ATRLPIAAPSANTSGRPSPTTGQHVLRD-LRGKIDAVIDGGPSTVGVESTVLDLTSPVP- 193

Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            ILRPGG+  E L+  +  V ++  V       P++PGM   HYAP  +V L    +   
Sbjct: 194 TILRPGGITYEELQAVLGKVAIDPAVKGQQVEHPKAPGMKYKHYAPAGEVFLVTGDLERV 253

Query: 247 EALIRFGNVPIKNIENAIISL-------------------NLSKTGKLKEAAFNLFNYMK 287
            A +R      +     +  L                    L    + +  A NLF  ++
Sbjct: 254 VARVRALVAAWQRRGRRVAVLATSETAPFYQDEPRPDYLEVLGSRRQPETIAANLFGALR 313

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D   A  I   ++   G+G+AI NRL ++AA R
Sbjct: 314 NCDRHHADIILAETVKEEGIGLAIMNRLRKSAANR 348


>gi|238855955|ref|ZP_04646241.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii 269-3]
 gi|260664672|ref|ZP_05865524.1| Sua5 family translation factor [Lactobacillus jensenii SJ-7A-US]
 gi|282934362|ref|ZP_06339629.1| hypothetical protein HMPREF0886_0956 [Lactobacillus jensenii 208-1]
 gi|238831428|gb|EEQ23779.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii 269-3]
 gi|260561737|gb|EEX27709.1| Sua5 family translation factor [Lactobacillus jensenii SJ-7A-US]
 gi|281301572|gb|EFA93849.1| hypothetical protein HMPREF0886_0956 [Lactobacillus jensenii 208-1]
          Length = 333

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 116/336 (34%), Positives = 173/336 (51%), Gaps = 21/336 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+     + + +A EFL  G  +A PTETVYGL   +    +++ +Y+ K RP+ NPLI
Sbjct: 4   QILK---KDQIDQAVEFLKKGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLI 60

Query: 62  CHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             VSD +M+K++A   P  +  L K FWPGPLTL+L L+    +    T  LKTA FR P
Sbjct: 61  VTVSDENMMKRYAKFVPERAEKLIKHFWPGPLTLLL-LVKEGSLPDAVTGGLKTAAFRCP 119

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T +LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLEST
Sbjct: 120 NDELTHELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLEST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV 236
           I+++  E  + +LRPG +  E L   +  ++      V + + P++PGM   HYAP + V
Sbjct: 179 IIDLSVETPI-VLRPGQITPEELSEVLGEKVLINTGKVSDKAIPKAPGMKYRHYAPNAPV 237

Query: 237 RLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
            +         I      A+    +V  K    A    +L K   LK+A  NLF+ ++  
Sbjct: 238 WVVDDTNDFGKIEFKSDTAVAALDSVLEKLDLPAENKFSLGK--DLKDADHNLFSALRFF 295

Query: 290 DDSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           DD     +I           +A  NRL +AAA  + 
Sbjct: 296 DDEDEIKTIYVQGFDEGEKSLAYMNRLNKAAAGHHY 331


>gi|331086808|ref|ZP_08335885.1| hypothetical protein HMPREF0987_02188 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409974|gb|EGG89409.1| hypothetical protein HMPREF0987_02188 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 507

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 96/336 (28%), Positives = 152/336 (45%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D N +  A   L  G  +A PTETVYGL   +    A ++ Y  K RP+ NPLI H+++
Sbjct: 13  IDENVIGMAGVILKEGGLVAFPTETVYGLGAHALKEEAAKKTYAAKGRPSDNPLIVHIAE 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
              +++ A ++   +  LA  FWPGPLT++ +   +  +   +T  L T   R+P     
Sbjct: 73  YRALEEIAVNIPDKTALLANHFWPGPLTMIFE--KSALVPYGTTGGLDTVAVRMPADEVA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +I   G  ++ PSAN SG+ S T   H+    +  +I +IIDGG  +IG+ESTI+++ 
Sbjct: 131 RAIILAGGGYVSAPSANTSGRPSPTTAMHV-KEDLDGKIDMIIDGGSVEIGVESTILDMT 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVELE----YCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
               + ILRPG +  E L+  I    E            P++PGM   HYAP++++ +  
Sbjct: 190 VTPPM-ILRPGAITKEMLEEVIGEVTEDQAIVSDKSKEAPKAPGMKYRHYAPKAKLMIIE 248

Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                    IR                            I  N+         A NL+  
Sbjct: 249 GETKEAVKAIRQVAFEQERLGYKVGIIATDETAEKYKRGIVKNIGTRENEYTIAQNLYRV 308

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D+     I   +    G+G A+ NRL++AA  
Sbjct: 309 LREFDEEDVDYIYSEAFAMDGIGSAVMNRLKKAAGH 344


>gi|153853663|ref|ZP_01995043.1| hypothetical protein DORLON_01034 [Dorea longicatena DSM 13814]
 gi|149753818|gb|EDM63749.1| hypothetical protein DORLON_01034 [Dorea longicatena DSM 13814]
          Length = 353

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 103/351 (29%), Positives = 170/351 (48%), Gaps = 34/351 (9%)

Query: 1   MQIMSIT---------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI 51
           M+IM            +++ +R+A   L  G  +A PTETVYGL  D+ N  A +++Y  
Sbjct: 1   MKIMKTIIEKIDKNQKNTDIIREAGRILKEGGLVAFPTETVYGLGADALNEDAAKKIYAA 60

Query: 52  KKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           K RP+ NPLI H++++  + K    V   ++ +A+ +WPGPLT++ +   +  +   +T 
Sbjct: 61  KGRPSDNPLIIHITNMKALDKIVSEVPEKAVKVAEKYWPGPLTMIFN--KSDIVPYGTTG 118

Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   R+P     +++I+  G  +A PSAN SG+ S T  +H+ +  +   + +I+DG
Sbjct: 119 GLDTVAVRMPVDEIAREVIDAGGGYIAAPSANTSGRPSPTTAQHV-AEDLTGRVDMIVDG 177

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGM 225
           G  +IG+ESTI++V  E  + ILRPG +  E  +  I  V ++  +   D    P++PGM
Sbjct: 178 GAVEIGVESTILDVTVEPPM-ILRPGAITKEMFEEVIGEVTVDRTLIRPDSKQVPKAPGM 236

Query: 226 LKSHYAPRSQV------------RLRAIHVNPREALIRFGNVPIKNI---ENAIISLNLS 270
              HYAP++ +             +        EA  + G +  +       +     + 
Sbjct: 237 KYRHYAPKADLTIIEGPLEKVVKEINKRAKEKSEAGYKVGVIGTEETVADYKSGDVKCIG 296

Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                   A NLF  ++  DD     I   S    G+G AI NRL +AA  
Sbjct: 297 TRADESTIAANLFRILREFDDDQVDYIYSESFDTAGIGSAIMNRLLKAAGH 347


>gi|315649887|ref|ZP_07902969.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453]
 gi|315274686|gb|EFU38068.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus vortex V453]
          Length = 385

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 111/343 (32%), Positives = 167/343 (48%), Gaps = 27/343 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + +     L++A   L  G  +A PTETVYGL  D+ N  A+ R++  K RPA NPLI H
Sbjct: 39  LKMAAEPELQEAGLVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPADNPLIVH 98

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +S+++ ++     V+     L   FWPGPL+LVL +     + P  TA L T   R+P  
Sbjct: 99  ISELAQLEGLVQHVNETERALMDSFWPGPLSLVLPVKRDA-VSPRVTAGLDTVAVRMPDH 157

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI   G PLA PSANRSG+ S T   H+L + +   I  ++DGG + +G+EST+V
Sbjct: 158 SVALALISAAGRPLAAPSANRSGRPSPTLASHVL-ADLAGYIDGVLDGGPAGVGVESTVV 216

Query: 182 NVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETS--TPQSPGMLKSHYAPRS 234
            V  +  V +LRPGG+  E L        +   L+    E     P+SPGM  +HYAP+ 
Sbjct: 217 QVGEDGAVTVLRPGGVTAEQLAAVAASVRLDPALQRAAGEAEGPAPRSPGMKYTHYAPKG 276

Query: 235 QVRLRAIHVNPREALIRFGNVPIK----------------NIENAIISLNLSKTGKLKEA 278
            + +         +      +                       A ++++L      +EA
Sbjct: 277 AMCVVQGPRADAVSARIAAELEAAARRGEVTGVLSFDEHIGHYRADVAVSLGSLAAPEEA 336

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           A  L+  ++  DD GA+ I   + P+ G+G A+ NRL +AA  
Sbjct: 337 ARRLYAGLRHFDDEGATFILAEACPDRGVGAAVMNRLLKAAGH 379


>gi|184154905|ref|YP_001843245.1| hypothetical protein LAF_0429 [Lactobacillus fermentum IFO 3956]
 gi|183226249|dbj|BAG26765.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 343

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 104/332 (31%), Positives = 162/332 (48%), Gaps = 19/332 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     +++A + + AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS
Sbjct: 6   IFQPAEVKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVS 65

Query: 66  DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            ++MV+   A +   +  L   FWPG LT++L +   T +    T  L T  FR P C  
Sbjct: 66  SLAMVEHFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQP 124

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN SG+ S T   H+    +  +I  IID G +++G+EST++++
Sbjct: 125 TLDLISQAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDM 183

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
              + V ILRPG +  + ++  I       + V +   P++PGM   HYAP +QV +   
Sbjct: 184 STSQPV-ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYIVDP 242

Query: 242 HVNPREALIRFG----NVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIAD 290
             +  E           V +   +  + +   S           ++EA+ +LF  ++  D
Sbjct: 243 ADDWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFD 302

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                  I        GLG A  NRL ++A  
Sbjct: 303 NQEEIHQIFCQGFEPTGLGAAYMNRLNKSAGG 334


>gi|168205563|ref|ZP_02631568.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens E str.
           JGS1987]
 gi|169344175|ref|ZP_02865157.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens C str.
           JGS1495]
 gi|169297633|gb|EDS79733.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens C str.
           JGS1495]
 gi|170662901|gb|EDT15584.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens E str.
           JGS1987]
          Length = 350

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%)

Query: 2   QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           Q +   D +   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NP
Sbjct: 6   QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65

Query: 60  LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D   + K+ A +   +  L   FWPGPLT++L       +  +++A L T   R
Sbjct: 66  LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+E
Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232
           STIV+   E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP
Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241

Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277
           +++VR            ++ I  N  +  ++ G +         +  I  +L     L  
Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVKSLGTREDLTS 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              NLF  ++  DD G   I   +     LG+AI NRL+++  
Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344


>gi|15643615|ref|NP_228661.1| hypothetical protein TM0852 [Thermotoga maritima MSB8]
 gi|4981386|gb|AAD35934.1|AE001752_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 335

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 113/321 (35%), Positives = 167/321 (52%), Gaps = 12/321 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L++A E L  G  I  PTETVYG+  D+ N  A ++++++K+RPA NPLI H+   
Sbjct: 13  DEKVLKEAAELLRNGEVIIFPTETVYGIGADAYNEEACKKIFKLKERPADNPLIVHIHSF 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +++ A      L   K FWPGPLT++     +  I P+ TA+L T   R+P      K
Sbjct: 73  KQLEEIAEGYEPHLDFLKKFWPGPLTVIF-RKKSEKIPPVVTADLPTVAVRMPAHPVALK 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE +GHP+A PSAN SG+ S TNVKH++   + K + LIID G +  GLESTIV++  E
Sbjct: 132 LIELFGHPIAAPSANISGRPSATNVKHVIEDFMGK-VKLIIDAGDTPFGLESTIVDLTKE 190

Query: 187 KKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           K V +LRPG +E+E LK      +  +     +    P +PGM   HYAP   + L    
Sbjct: 191 KPV-LLRPGPVEVERLKELFPELVVPDFVRKGNFKGRPLAPGMKYRHYAPLKPLILVEDL 249

Query: 243 VNPREALIRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
               E L ++ +  +  +E         + +         A N+F+ ++ A+  G   I 
Sbjct: 250 TKMEEVLKKYPDHVVICVEERKELYDDRIVVGSLKNPYSIAQNIFSALREAEKMGKEYII 309

Query: 299 FSSIPNHGLGIAINNRLERAA 319
                  G+  A+ NRL +AA
Sbjct: 310 VEGFEERGILFAVMNRLRKAA 330


>gi|227514469|ref|ZP_03944518.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum ATCC
           14931]
 gi|227087155|gb|EEI22467.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus fermentum ATCC
           14931]
          Length = 343

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 104/332 (31%), Positives = 162/332 (48%), Gaps = 19/332 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     +++A + + AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS
Sbjct: 6   IFQPAEVKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVS 65

Query: 66  DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            ++MV+   A +   +  L   FWPG LT++L +   T +    T  L T  FR P C  
Sbjct: 66  SLAMVEHFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQP 124

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN SG+ S T   H+    +  +I  IID G +++G+EST++++
Sbjct: 125 TLDLISQVGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDM 183

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
              + V ILRPG +  + ++  I       + V +   P++PGM   HYAP +QV +   
Sbjct: 184 STSQPV-ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYIVDP 242

Query: 242 HVNPREALIRFG----NVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIAD 290
             +  E           V +   +  + +   S           ++EA+ +LF  ++  D
Sbjct: 243 ADDWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHLFEGLRDFD 302

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                  I        GLG A  NRL ++A  
Sbjct: 303 NQEEIHQIFCQGFEPTGLGAAYMNRLNKSAGG 334


>gi|268319747|ref|YP_003293403.1| hypothetical protein FI9785_1276 [Lactobacillus johnsonii FI9785]
 gi|262398122|emb|CAX67136.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 330

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 160/330 (48%), Gaps = 13/330 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I +   + +A   L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFNKEQISEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++K+   V   +  L K FWPGPLT++L +   T +    T  L TA FR 
Sbjct: 60  IVTVSDEEMMEKYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLES
Sbjct: 119 PNDEMTHDLISELGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++  EK   +LRPG +  E +   +  E+            P++PGM   HYAP + 
Sbjct: 178 TIVDLSVEKP-TVLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAP 236

Query: 236 VRLRAIHVN--PREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292
           V +     +    +     G   +  +   I S N    GK + +AA NLF  ++  DD 
Sbjct: 237 VLIVDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDDE 296

Query: 293 G-ASSIAFSSIPNHGLGIAINNRLERAAAP 321
                I      +  +  A  NRL +AAA 
Sbjct: 297 NKIKRIYVQGFDHGAISAAYMNRLNKAAAG 326


>gi|325663226|ref|ZP_08151676.1| hypothetical protein HMPREF0490_02417 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470680|gb|EGC73910.1| hypothetical protein HMPREF0490_02417 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 509

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 95/336 (28%), Positives = 152/336 (45%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + +  A   L  G  +A PTETVYGL   +    A ++ Y  K RP+ NPLI H+++
Sbjct: 15  IDEDVIGMAGVILKEGGLVAFPTETVYGLGAHALKEEAAKKTYAAKGRPSDNPLIVHIAE 74

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
              +++ A ++   +  LA  FWPGPLT++ +   +  +   +T  L T   R+P     
Sbjct: 75  YRALEEIAVNIPDKTALLANHFWPGPLTMIFE--KSALVPYGTTGGLDTVAVRMPADEVA 132

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +I   G  ++ PSAN SG+ S T   H+    +  +I +IIDGG  +IG+ESTI+++ 
Sbjct: 133 RAIILAGGGYVSAPSANTSGRPSPTTAMHV-KEDLDGKIDMIIDGGSVEIGVESTILDMT 191

Query: 185 CEKKVRILRPGGLEIETLKRAISVELE----YCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
               + ILRPG +  E L+  I    E            P++PGM   HYAP++++ +  
Sbjct: 192 VTPPM-ILRPGAITKEMLEEVIGEVTEDQAIVSDKSKEAPKAPGMKYRHYAPKAKLMIIE 250

Query: 241 IHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                    IR                            I  N+         A NL+  
Sbjct: 251 GDTKEAVKAIRQVAFEQERLGYKVGIIATDETAEKYKRGIVKNIGTRENEYTIAQNLYRV 310

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D+     I   +    G+G A+ NRL++AA  
Sbjct: 311 LREFDEEDVDYIYSEAFAMDGIGSAVMNRLKKAAGH 346


>gi|168215829|ref|ZP_02641454.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens NCTC
           8239]
 gi|182382042|gb|EDT79521.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens NCTC
           8239]
          Length = 350

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%)

Query: 2   QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           Q +   D +   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NP
Sbjct: 6   QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65

Query: 60  LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D   + K+ A +   +  L   FWPGPLT++L       +  +++A L T   R
Sbjct: 66  LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--RKKDIVSDVTSAGLDTVGVR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+E
Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232
           STIV+   E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP
Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241

Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277
           +++VR            ++ I  N  +  ++ G +         +  I  +L     L  
Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVKSLGTREDLTS 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              NLF  ++  DD G   I   +     LG+AI NRL+++  
Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344


>gi|18311182|ref|NP_563116.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens str.
           13]
 gi|18145865|dbj|BAB81906.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 350

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%)

Query: 2   QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           Q +   D +   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NP
Sbjct: 6   QFIKDIDKDIKYLEEAAEIIKNGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65

Query: 60  LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D   + K+ A +   +  L   FWPGPLT++L       +  +++A L T   R
Sbjct: 66  LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+E
Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232
           STIV+   E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP
Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVDIDKAILTTLDKDTKPKAPGMKYKHYAP 241

Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277
           +++VR            ++ I  N  +  ++ G +         +  I  +L     L  
Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVKSLGTREDLTS 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              NLF  ++  DD G   I   +     LG+AI NRL+++  
Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344


>gi|83941398|ref|ZP_00953860.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36]
 gi|83847218|gb|EAP85093.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. EE-36]
          Length = 314

 Score =  335 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 126/323 (39%), Positives = 178/323 (55%), Gaps = 10/323 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   D + + +A   L  G  +A+PTETVYGL  D+RN TA+  +YE K RP+ NPL
Sbjct: 1   MTEILPADPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+D+   +++      +  LA  FWPGP+TLVL L     +  L TA L +   RVP
Sbjct: 61  IIHVADVDQARRYGRWSDTAEILASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVP 120

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + ++   G P+A PSAN SG+IS T  +H+LS  +   I  ++D G   +GLEST
Sbjct: 121 AHPTARAILRALGGPVAAPSANPSGKISATTAQHVLS-GLGGRIAAVVDDGPCTVGLEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+ +  + +  +LR GGL  E ++ A+   L+    + +   +PG L SHYAP + VRL 
Sbjct: 180 IIGL-NQPRPTLLRAGGLPSEAIEAALGAPLDVA--DGAEIIAPGQLASHYAPHASVRLN 236

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A      E  + FG       ++    L LS +G L EAA +LF+ +   D      IA 
Sbjct: 237 AQAATGGEVYLGFGAASGSGPDD----LTLSASGDLVEAAAHLFDRLHALDRLR-KPIAV 291

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
           + IP  GLG AIN+RL RAAAPR
Sbjct: 292 APIPETGLGRAINDRLRRAAAPR 314


>gi|261409693|ref|YP_003245934.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10]
 gi|261286156|gb|ACX68127.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. Y412MC10]
          Length = 365

 Score =  335 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 111/338 (32%), Positives = 164/338 (48%), Gaps = 27/338 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL +A + L  G  +A PTETVYGL  D+ N  A+ R++  K RP+ NPLI H+S+++
Sbjct: 20  KQALHEAGQVLAQGGTVAFPTETVYGLGADAGNTEAVERIFAAKGRPSDNPLIVHISELA 79

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +      V+     L   FWPGPL+LVL +     + P  TA L T   R+P       
Sbjct: 80  QLDGLVQQVNETERALMASFWPGPLSLVLPVKPGA-VSPRVTAGLDTVAVRMPDHRVALA 138

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PLA PSANRSG+ S T   H+L   +   I  ++DGG + +G+EST+V V  +
Sbjct: 139 LISAAGCPLAAPSANRSGRPSPTLASHVL-EDLAGAIDGVLDGGPAGVGVESTVVQVGED 197

Query: 187 KKVRILRPGGLEIETLKRAIS-----VELEYCVDETS--TPQSPGMLKSHYAPRSQVRLR 239
             V +LRPGG+  E L    +       L+    E     P+SPGM  +HYAP+  + + 
Sbjct: 198 GAVTVLRPGGVTAEQLAAVAASVRQDPALQRAAGEAESPAPRSPGMKYTHYAPKGAMCVV 257

Query: 240 AIHVNPREALIRFGNVPIK----------------NIENAIISLNLSKTGKLKEAAFNLF 283
                   +      +                       A ++++L      +EAA  L+
Sbjct: 258 QGPRADTVSARIAAELEAAARRGEVTGVLSFDEHIGHYAADVAVSLGSLAAPEEAARRLY 317

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             ++  D+ GA+ I   + P+ GLG A+ NRL +AA  
Sbjct: 318 AGLRRFDEEGATFILAEACPDQGLGAAVMNRLLKAAGH 355


>gi|168213696|ref|ZP_02639321.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens CPE
           str. F4969]
 gi|170714770|gb|EDT26952.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium perfringens CPE
           str. F4969]
          Length = 350

 Score =  335 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 107/343 (31%), Positives = 170/343 (49%), Gaps = 28/343 (8%)

Query: 2   QIMSITDSNA--LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           Q +   D +   L +A E +  G   A PTETVYGL  ++ +  A+++++  K RP  NP
Sbjct: 6   QFIKDIDKDIKYLEEAAEIIKKGGIGAFPTETVYGLGANALDGEAVKKIFVAKGRPQDNP 65

Query: 60  LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D   + K+ A +   +  L   FWPGPLT++L       +  +++A L T   R
Sbjct: 66  LIIHIADKKDIDKYVAEIPKYAQELMDKFWPGPLTIIL--KKKDIVSDVTSAGLDTVGVR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      KLIE  G P+A PSAN SG+ S T+++      +   +  II    S+IG+E
Sbjct: 124 MPNDEIALKLIELSGVPIAAPSANISGRPSPTDIERC-EEDLNGRVDFIIGAKKSEIGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAP 232
           STIV+   E  + +LRPGG+ +E LK       I   +   +D+ + P++PGM   HYAP
Sbjct: 183 STIVDATGEH-LCVLRPGGITLEMLKDIDEGVYIDKAILTTLDKDTKPKAPGMKYKHYAP 241

Query: 233 RSQVR------------LRAIHVNPREALIRFGNVPIKNI---ENAIISLNLSKTGKLKE 277
           +++VR            ++ I  N  +  ++ G +         +  I  +L     L  
Sbjct: 242 KAKVRMVQGPINKMVEKIKEIVHNYIDEDLKVGIMATDETISMYDEGIVKSLGTREDLTS 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              NLF  ++  DD G   I   +     LG+AI NRL+++  
Sbjct: 302 VTKNLFEMLRAFDDLGVDVIITEAFEEKDLGVAIMNRLKKSCG 344


>gi|89070201|ref|ZP_01157529.1| Sua5/YciO/YrdC family protein [Oceanicola granulosus HTCC2516]
 gi|89044217|gb|EAR50368.1| Sua5/YciO/YrdC family protein [Oceanicola granulosus HTCC2516]
          Length = 317

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 131/325 (40%), Positives = 172/325 (52%), Gaps = 13/325 (4%)

Query: 1   MQIMSITDSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M +    D   L +A   L   G  +A PTETVYGL   + +  A+ R++E K RPA NP
Sbjct: 1   MTLRLALDDAGLAEAARLLRTEGGIVAFPTETVYGLGARACDDRAVARVFEAKGRPAFNP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI H  D++ V+   ++ P +  LA  FWPGPLTLVL L     + PL T    T   R+
Sbjct: 61  LIVHCPDLATVETLCTLPPGAGRLAATFWPGPLTLVLPLRPDAPVSPLVTDGRDTLAVRL 120

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P     + +     PLA PSAN SG+IS T+  H+L + +   I  ++D G   +GLEST
Sbjct: 121 PDHPAARALLARTGPLAGPSANPSGRISPTSADHVL-AGLDGRIDAVLDAGPCPVGLEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV +  E  +  LR GGL  E L+  +   L           +PG L SHYAPR  +RL 
Sbjct: 180 IVALLPEPTL--LRAGGLPTEALEACLGAPL--AAHGGGEITAPGQLASHYAPRGTLRLD 235

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A    P E  + FG            +LNLS +G L EAA  LF  +   D +GA  IA 
Sbjct: 236 ADAPAPGETYLGFGPASPG-------ALNLSPSGDLVEAAARLFAALHALDAAGARRIAV 288

Query: 300 SSIPNHGLGIAINNRLERAAAPRNQ 324
           + IP HGLG AIN+RL RAAAPR++
Sbjct: 289 APIPAHGLGRAINDRLRRAAAPRDE 313


>gi|163741878|ref|ZP_02149268.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis 2.10]
 gi|161385051|gb|EDQ09430.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis 2.10]
          Length = 315

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 125/315 (39%), Positives = 170/315 (53%), Gaps = 13/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A + L  G  +A PTETVYGL  D+R   A+  LY  K RP+ NPLI HV  + 
Sbjct: 13  PQEISTAADLLKEGQLVAFPTETVYGLGADARQTNAVEALYAAKGRPSFNPLIAHVHSVE 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
             ++H     ++  LA+ FWPGPLTLVL L     I PL TA L T   R+P     + L
Sbjct: 73  TAQRHVIWSDIADTLAEAFWPGPLTLVLPLREDHGISPLVTAGLNTLGIRIPAHPAARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A PSAN SG+IS T   H++ + +   I  ++D G   +G+ESTI+ +    
Sbjct: 133 LSVLDGPVAAPSANPSGRISPTTAAHVI-AGLGGRIAAVVDDGPCGVGVESTIIGLATGT 191

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  E ++  +   L +  D +    +PG L SHYAPR+ VRL        E
Sbjct: 192 PL-LLRPGGLATEEIEAVLGHTL-HLRDASDPLTAPGQLLSHYAPRASVRLNVTTPQDGE 249

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             + FG +           LNLS +G L+EAA  LF ++   D   A  IA + IP  GL
Sbjct: 250 LYLGFGAMECD--------LNLSASGDLREAAAQLFGHLHRLDAR-AQPIAVAPIPEAGL 300

Query: 308 GIAINNRLERAAAPR 322
           G+AIN+RL RAAAPR
Sbjct: 301 GVAINDRLRRAAAPR 315


>gi|297585438|ref|YP_003701218.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens
           MLS10]
 gi|297143895|gb|ADI00653.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus selenitireducens
           MLS10]
          Length = 352

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 109/329 (33%), Positives = 158/329 (48%), Gaps = 19/329 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +A E +  G  +A PTETVYGL  D+ +  AIRR++E K RPA NPLI HV+ I 
Sbjct: 24  DRAIAEAAELIRNGEVVAFPTETVYGLGGDATSDEAIRRIFEAKGRPADNPLIVHVASIE 83

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              +   ++   +  L   FWPGPLT+VL    T  +    TA L T   R+P      +
Sbjct: 84  DAARWTLTLPKTAKDLMAAFWPGPLTIVLPHNGT--LSGAVTAGLPTVGLRMPDHPVALR 141

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE  G PLA PS NRSG+ S T   H+    +   IP+I+DGG + +GLEST+V V  +
Sbjct: 142 LIEASGRPLAAPSGNRSGRPSPTEAAHV-EEDLNGRIPMILDGGPAGVGLESTVVEVT-D 199

Query: 187 KKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            +V +LRPGG+ +E L+            +     P+SPGM  +HYAP   + L    + 
Sbjct: 200 GQVTVLRPGGVTLEALREVAEHVAIDPSLLKSDEAPRSPGMKYTHYAPDVPLYLVEGELA 259

Query: 245 PREALIRFGNV-----------PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
             +  IR                   +  A   +++     L      L+  ++      
Sbjct: 260 ALKQAIRKAKEDGLLTGAIIVNEWAGLTGAHQEVSVGSETDLAAVGRELYRALRQFKTGE 319

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
              +   + P   LG AI NRLE+A+  +
Sbjct: 320 VDMLLVCTFPETELGGAIMNRLEKASGGK 348


>gi|114771324|ref|ZP_01448744.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HTCC2255]
 gi|114548249|gb|EAU51136.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HTCC2255]
          Length = 318

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 131/322 (40%), Positives = 187/322 (58%), Gaps = 16/322 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +S+    A E L +G  +A PTETVYGL  ++ N  A+  +Y  KKRP  NPLI HV +
Sbjct: 8   INSDGYAYASEILKSGGLVAFPTETVYGLGANALNSDAVAEIYTAKKRPNFNPLIVHVLN 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +   +K A  +  +L LA  FWPGPLT+V  + + T++  L TA L T   RVP     +
Sbjct: 68  LETAQKFAVFNKDTLLLANKFWPGPLTVVAPIKNKTNLSRLITAGLDTVAIRVPAHPVAR 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL+ET+  P+A PSAN SG IS T+  H+  S +   I  I++GG   +GLESTI+ +  
Sbjct: 128 KLLETFNGPIAAPSANPSGSISSTSAAHV-KSGLGGRIQAILNGGKCDVGLESTII-LSN 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             +  ILR GG+  + ++  +  ++      + T  SPG L SHYAP + +R+ AI  + 
Sbjct: 186 NGQCNILRSGGISEKEIEEVLGYKISLN-QNSDTLISPGQLSSHYAPNANLRMNAIKADE 244

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSS 301
            E +I FG+V        +  LNLS  G L EAA NLF Y+ +AD+     G + IA + 
Sbjct: 245 DEYMIGFGDV--------VGQLNLSSQGNLIEAATNLFAYLHMADEDAITLGKTKIAIAK 296

Query: 302 IPNHGLGIAINNRLERAAAPRN 323
           IP HGLG+AIN+RL RA+ P++
Sbjct: 297 IPMHGLGVAINDRLTRASTPKS 318


>gi|296134388|ref|YP_003641635.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola sp. JR]
 gi|296032966|gb|ADG83734.1| Sua5/YciO/YrdC/YwlC family protein [Thermincola potens JR]
          Length = 361

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 28/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A E +  G  +A PTETVYGL  ++ +  A+++++  K RP+ NPLI H+++ 
Sbjct: 15  DPETISQAAEIIKRGGVVAFPTETVYGLGANALDGPAVQKIFAAKGRPSDNPLIVHIAEF 74

Query: 68  SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S ++   +  PL +    ++FWPGPLT+++      DI    T  LKT   R+P      
Sbjct: 75  SQLEMLVTEVPLTARRAMEVFWPGPLTIIMPCRD--DIPRTVTGGLKTVGVRMPKHPVAL 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    P+A PSAN SG+ S T  +H++   +  +I  +IDGG +++G+EST++++  
Sbjct: 133 ALIKAAKLPIAAPSANSSGKPSPTEARHVMYD-LAGKIDAVIDGGPAQVGVESTVLDMTG 191

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDET---STPQSPGMLKSHYAPRSQVRLRAI 241
           +  V ILRPGG+  E L+  +  V+L+    +      P++PGM   HY+P +++ L   
Sbjct: 192 DTPV-ILRPGGVTREQLEAILGHVDLDLPSVDKIIHQAPKAPGMKYRHYSPEAKLILVKP 250

Query: 242 HVNPREALI-----------RFGNVPIKNIENA-------IISLNLSKTGKLKEAAFNLF 283
                 A I                 + ++E A       ++   L   G L+E A NLF
Sbjct: 251 VPGKAVADIIQALADRYQSKGMKVALMVSVETASILPLEDVLCGILGHRGHLEEIAGNLF 310

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D      I        G+G+AI NRL +AA+
Sbjct: 311 KVLREVDAQKPDVIIAEGFAEAGIGMAIMNRLTKAAS 347


>gi|294084260|ref|YP_003551018.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663833|gb|ADE38934.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 325

 Score =  335 bits (859), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 130/333 (39%), Positives = 182/333 (54%), Gaps = 19/333 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M        N++ +A + L AG  +A PTETVYGL  D+ N  A+  +++ K RP+ NPL
Sbjct: 1   MTECLSISENSVARAVDLLRAGQLVAFPTETVYGLGGDACNDHAVAGIFKTKGRPSFNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+ I M         ++  LA  FWPG +T++LD      +  L+TA L     RVP
Sbjct: 61  ISHVATIDMAFTLGKKTAIAEILAYNFWPGAMTMILDRTKDCKVSMLTTAGLDKIAVRVP 120

Query: 121 CGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 +L+ ++G PLA PSAN SG+IS + V H++   +  +I LI+DGG  + GLEST
Sbjct: 121 SHEAATQLLSSFGGPLAAPSANPSGRISPSTVSHVI-DGLGGQIDLILDGGACESGLEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPR 233
           I++      V ILRPGG+  + +   ++      +E     ++   P SPG L SHYAP+
Sbjct: 180 IIDCSANIPV-ILRPGGITRDAVNDVLNQAGHRLLEQTIAGNDDKRPVSPGQLASHYAPQ 238

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
             VR+ A +    E  I FG+   +        LNLS +G L EAA NLF  +  AD  G
Sbjct: 239 LGVRMNATNAEDTEIAIGFGSQMHE------APLNLSLSGNLTEAAANLFALLHKADKLG 292

Query: 294 AS----SIAFSSIPNHGLGIAINNRLERAAAPR 322
           A      IA + IP+H LG AIN+RL RA+APR
Sbjct: 293 AKQNATHIAIAPIPDHELGEAINDRLRRASAPR 325


>gi|56965628|ref|YP_177362.1| translation factor SUA5 [Bacillus clausii KSM-K16]
 gi|56911874|dbj|BAD66401.1| translation factor SUA5 [Bacillus clausii KSM-K16]
          Length = 342

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 108/331 (32%), Positives = 174/331 (52%), Gaps = 14/331 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I S   +  +++A  ++     IA PTETVYGL  ++ +  A+ +++  K RP+ NPLI 
Sbjct: 15  IDSDKQTEMIQEAALWIKQNKLIAFPTETVYGLGANALSYEAVAQIFAAKGRPSDNPLIV 74

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H+ D S + K     PL +  L   FWPG LTL+L+  +   I    TA L T   R+P 
Sbjct: 75  HIGDSSQLDKLVKSIPLNANKLMAAFWPGALTLILE--AKEAIAENVTAGLSTVGVRMPS 132

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                KL++  G P+A PSAN SG+ S T   H++ + +  +I  I+DGG + IGLEST+
Sbjct: 133 HPVALKLLQECGLPVAAPSANMSGRPSPTTAAHVI-ADLDGKIDGIVDGGSTGIGLESTV 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD-ETSTPQSPGMLKSHYAPRSQVRL 238
           ++V     + + RPGG+ +E ++  I  ++++  ++   S P+SPGM  +HYAP ++V L
Sbjct: 192 LDVSKPTPM-LYRPGGVSVEEIEAVIGKIDIDPALETADSAPKSPGMKYTHYAPNAEVIL 250

Query: 239 RAIHVNPREALIRFGNVPIK-----NIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDS 292
                +    +        K         A    ++ + G  L+  A  L+  ++  D+ 
Sbjct: 251 VDSDDSIHHLVAEAKKEGRKVAVFATTGTADYKADIVRRGESLEHTAHILYGVLRDFDEQ 310

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
           GA  I   ++P  G+G AI NRLE+AA  + 
Sbjct: 311 GADIIYVKTVPTEGVGRAIMNRLEKAAGGKR 341


>gi|256850893|ref|ZP_05556282.1| Sua5 family translation factor [Lactobacillus jensenii 27-2-CHN]
 gi|260661107|ref|ZP_05862021.1| Sua5 family translation factor [Lactobacillus jensenii 115-3-CHN]
 gi|282934195|ref|ZP_06339473.1| hypothetical protein HMPREF0886_1793 [Lactobacillus jensenii 208-1]
 gi|256615955|gb|EEU21143.1| Sua5 family translation factor [Lactobacillus jensenii 27-2-CHN]
 gi|260548044|gb|EEX24020.1| Sua5 family translation factor [Lactobacillus jensenii 115-3-CHN]
 gi|281301809|gb|EFA94075.1| hypothetical protein HMPREF0886_1793 [Lactobacillus jensenii 208-1]
          Length = 333

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 19/335 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+     + + +A EFL  G  +A PTETVYGL   +    +++ +Y+ K RP+ NPLI
Sbjct: 4   QILK---KDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNPLI 60

Query: 62  CHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             VSD  M+K++A   P  +  L K FWPGPLTL+L L+    +  + T  LKTA FR P
Sbjct: 61  VTVSDEDMMKQYAKFIPERAEKLIKHFWPGPLTLLL-LVKEGSLPTVVTGGLKTAAFRCP 119

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T +LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLEST
Sbjct: 120 DDELTHELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLEST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQV 236
           I+++  E  + +LRPG +  E L + +  ++      V + + P++PGM   HYAP + V
Sbjct: 179 IIDLSVETPI-VLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSAPV 237

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNL------SKTGKLKEAAFNLFNYMKIAD 290
            +    V     +    +  +  +++ + +L+L      S    LK+A  NLF+ ++  D
Sbjct: 238 WV-VDDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRFFD 296

Query: 291 DSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           D     +I           +A  NRL +AAA  + 
Sbjct: 297 DEASIKTIYVQGFDEGEQSLAYMNRLNKAAAGHHY 331


>gi|297184204|gb|ADI20322.1| putative translation factor (sua5) [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 318

 Score =  335 bits (859), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 131/322 (40%), Positives = 186/322 (57%), Gaps = 16/322 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +S+    A E L +G  +A PTETVYGL  ++ N  A+  +Y  KKRP  NPLI HV +
Sbjct: 8   INSDGYAYASEILKSGGLVAFPTETVYGLGANALNSDAVAEIYTAKKRPNFNPLIVHVLN 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +   +K A  +  +L LA  FWPGPLT+V  + + T++  L TA L T   RVP     +
Sbjct: 68  LETAQKFAVFNKDTLLLANKFWPGPLTVVAPIKNKTNLSKLITAGLDTVAIRVPAHPVAR 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL+ET+  P+A PSAN SG IS T+  H+  S +   I  I++GG   +GLESTI+ +  
Sbjct: 128 KLLETFNGPIAAPSANPSGSISSTSAAHV-KSGLGGRIQAILNGGKCDVGLESTII-LSN 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             +  ILR GG+  + ++  +   +      + T  SPG L SHYAP + +R+ AI  + 
Sbjct: 186 NGQCNILRSGGISEKEIEEVLGYRISLN-QNSDTLISPGQLSSHYAPNANLRMNAIKADE 244

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSS 301
            E +I FG+V        +  LNLS  G L EAA NLF Y+ +AD+     G + IA + 
Sbjct: 245 DEYMIGFGDV--------VGQLNLSSQGNLIEAATNLFAYLHMADEDAITLGKTKIAIAK 296

Query: 302 IPNHGLGIAINNRLERAAAPRN 323
           IP HGLG+AIN+RL RA+ P++
Sbjct: 297 IPMHGLGVAINDRLTRASTPKS 318


>gi|134300997|ref|YP_001114493.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum reducens MI-1]
 gi|134053697|gb|ABO51668.1| translation factor SUA5 [Desulfotomaculum reducens MI-1]
          Length = 354

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 112/342 (32%), Positives = 160/342 (46%), Gaps = 28/342 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S  D   + +A   +  G  +A PTETVYGL  +  +  A+  +Y  K RP+ NPLI HV
Sbjct: 14  SALDMRLINQAAAIIKRGGLVAFPTETVYGLGANGLDGKAVADIYRAKGRPSDNPLILHV 73

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +D +MV++ +  + P +  L K FWPGPLTLV+   S   I    T  L T   R+P   
Sbjct: 74  ADTNMVRELSKNLPPKATLLMKKFWPGPLTLVVPRASH--IPREVTGGLATVAVRMPHHP 131

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               LI+  G P+A PSAN+SG+ S TN +H+    +   I  I+DGG + +GLEST+++
Sbjct: 132 VALALIKASGVPIAAPSANKSGRPSPTNAEHVKLD-LQGCIDAILDGGPAGLGLESTVLD 190

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           +     V ILRPGG+  E L  A+         L   + +   P+SPGM   HYAP + +
Sbjct: 191 LTGAAPV-ILRPGGVTYEQLLEALGDVTIDPSALGERLSKDKAPRSPGMKYKHYAPAAPL 249

Query: 237 RLRAIHVNPREALI------------RFGNVPIKNIENAIIS----LNLSKTGKLKEAAF 280
            L        +A I            R G +  +            L +         A 
Sbjct: 250 ILFEGEPEKVKAAIVERAEELLKGGKRVGILATEEHAQDYPPDSKILKIGSRKNPAGVAA 309

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            LF  ++  D      I        G+G+A+ NRL RAA  R
Sbjct: 310 MLFKRLREFDQLQVDVILTEGFETKGIGLAVMNRLRRAAGER 351


>gi|75676880|ref|YP_319301.1| Sua5/YciO/YrdC/YwlC [Nitrobacter winogradskyi Nb-255]
 gi|74421750|gb|ABA05949.1| translation factor SUA5 [Nitrobacter winogradskyi Nb-255]
          Length = 328

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 134/310 (43%), Positives = 186/310 (60%), Gaps = 6/310 (1%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             L  G  +A PTETVYGL  D+ N  A+ RLY  K RPA NPLI HVSD++  ++ A  
Sbjct: 22  RILHNGGLVAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVSDLAAAQRIARF 81

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           D  +L L + FWPGPLTLVL  ++   +  L+TA+L T   RVP     + ++  +G  +
Sbjct: 82  DAAALALTEAFWPGPLTLVLPKVARCPVADLATASLDTIALRVPAHPVARAILRGFGGAV 141

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SG +S T   H+    +   I LI+DGG  ++G+ESTIV      +  +LRPG
Sbjct: 142 VAPSANLSGHVSPTTAAHV-RHDLEGRIDLIVDGGPVEVGIESTIVGCF--DRPTLLRPG 198

Query: 196 GLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           G+    ++R +   L       +   P++ GML SHYAPR+++RL A ++ P EAL+ FG
Sbjct: 199 GISRADIERVLGGPLVSPAPAAADGRPRASGMLASHYAPRARMRLNAANLAPGEALLAFG 258

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
            V    I+ A+  +NLS+ G LKEAA +LF  ++  D SGA +IA + IP  GLG AIN+
Sbjct: 259 PVDPPGIDTAVAVMNLSERGDLKEAAAHLFGCLRALDASGARTIAVTPIPEDGLGEAIND 318

Query: 314 RLERAAAPRN 323
           RL RAAAP+ 
Sbjct: 319 RLRRAAAPKG 328


>gi|91975727|ref|YP_568386.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris BisB5]
 gi|91682183|gb|ABE38485.1| translation factor SUA5 [Rhodopseudomonas palustris BisB5]
          Length = 330

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 137/310 (44%), Positives = 178/310 (57%), Gaps = 6/310 (1%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  I  PTETVYGL  D+ NP A+ RLY  K RP+ NPLI HV+ +   +  A  D
Sbjct: 23  CLRGGGLIGFPTETVYGLGADAANPAAVARLYAAKGRPSFNPLIAHVASLDSARGLARFD 82

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             +L LA+ FWPGPLTLVL       +  L+TA L T   R+P     + ++  +G  + 
Sbjct: 83  ATALRLAEAFWPGPLTLVLPKAPGCTVSDLATAGLDTVAVRIPAHPVAQAILRAFGGAVV 142

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANRSG +S T   H+  + +   I LI+DGG  ++G+ESTI+       V +LRPGG
Sbjct: 143 APSANRSGHVSPTTAAHV-RADLDGRIDLIVDGGPVEVGVESTILGCCLGAPV-LLRPGG 200

Query: 197 LEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
              E ++R +     E          P +PGML SHYAP +QVRL A  V P EAL+ FG
Sbjct: 201 APREAIERLLGFALAEPAAAPAGDHAPLAPGMLASHYAPGAQVRLDARDVRPGEALLGFG 260

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
            V +   E A    NLS  G L EAA +LF +++  D SGA +IA   IP+ GLG AIN+
Sbjct: 261 PVALPGAEAASAIRNLSPAGDLAEAAAHLFGFLRELDASGAQAIAVMPIPHQGLGEAIND 320

Query: 314 RLERAAAPRN 323
           RL RAAAPR+
Sbjct: 321 RLRRAAAPRD 330


>gi|114569382|ref|YP_756062.1| translation factor SUA5 [Maricaulis maris MCS10]
 gi|114339844|gb|ABI65124.1| translation factor SUA5 [Maricaulis maris MCS10]
          Length = 327

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 130/322 (40%), Positives = 177/322 (54%), Gaps = 13/322 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I   +D   + +A   L AG  +A+PTETVYGLA D+ N  A+ RLY  K RP  NPLI 
Sbjct: 15  IKPASDPAVIEEAVAILKAGGLVAMPTETVYGLAADAGNADAVARLYAAKGRPRFNPLIA 74

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           HV+  +M  + A    L+  LA+ FWPGPLTLVL       I  ++ A L +   R P  
Sbjct: 75  HVAGPNMAWRLAGWPDLADQLAESFWPGPLTLVLPKRPDAPIADIANAGLDSIALRAPRH 134

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + LI  +  PL  PSAN SG +S T   H+ +  +   I LI+DGG   +GLEST++
Sbjct: 135 AAAQALIRAFDGPLVAPSANPSGAVSPTTAAHV-AEGLGDRIDLILDGGACPVGLESTVI 193

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
            +       +LRPGGL    ++       +    +     +PGM+KSHYAP + +RL A 
Sbjct: 194 ALLGGTP-TLLRPGGLARRQIEAITGRLAD--AGDGEALLAPGMMKSHYAPNAAMRLGAE 250

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
              P E L+ FG +           LNLS+TG L EAA  LF  ++  D  GA+ IA + 
Sbjct: 251 TAQPGEVLLGFGTISGD--------LNLSETGDLAEAATGLFAALRTLDARGATRIAVAP 302

Query: 302 IPNHGLGIAINNRLERAAAPRN 323
           IP+ GLG AIN+RL+RAAAP++
Sbjct: 303 IPDEGLGEAINDRLQRAAAPKD 324


>gi|323702620|ref|ZP_08114282.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532439|gb|EGB22316.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 354

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 117/337 (34%), Positives = 164/337 (48%), Gaps = 28/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N + +A + +  G  +A PTETVYGL  +  + TA+  +Y  K RP+ NPLI HV+D 
Sbjct: 17  DQNVIDRAAQIIKNGGLVAFPTETVYGLGANGLDGTAVAGIYRAKGRPSDNPLILHVADF 76

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +M +   A + P++  L   FWPGPLTLV+       I    T  L T   R+P      
Sbjct: 77  AMAEALSAGLPPVAGMLMDKFWPGPLTLVVPR--ANHIPGQVTGGLDTVGIRMPSHPVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G P+A PSANRSG+ S T   H+  + +   I  I+DGG + +GLEST+++V  
Sbjct: 135 ALIKAAGVPIAAPSANRSGRPSPTRAAHV-QADLQGRIDAILDGGPTGVGLESTVLDVSG 193

Query: 186 EKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL- 238
           E+ V ILRPGG+  E L   +         L   +     P+SPGM  +HYAP + + L 
Sbjct: 194 EQPV-ILRPGGVTYEQLADLLPRVTIDPSILGKKLSRDQAPRSPGMKYTHYAPAAPLTLF 252

Query: 239 --------RAIHVNPREALIRFGNVPIKNIE-------NAIISLNLSKTGKLKEAAFNLF 283
                   +AI     E L R   V I   E          + L + +      AA  LF
Sbjct: 253 EGEPARVVQAIARRAAEQLARGSRVGILAFEENAPYYPRGAVILTMGQQKNPATAANMLF 312

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D      I    +   G+G+AI NRL RAA 
Sbjct: 313 ALLRQFDRLKVEVILAEGMEPKGIGLAIMNRLRRAAG 349


>gi|163738876|ref|ZP_02146289.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis BS107]
 gi|161387681|gb|EDQ12037.1| Sua5/YciO/YrdC family protein [Phaeobacter gallaeciensis BS107]
          Length = 315

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 125/315 (39%), Positives = 171/315 (54%), Gaps = 13/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A + L  G  +A PTETVYGL  D+R   A+  LY  K RP+ NPLI HV  + 
Sbjct: 13  PQEISTAADLLKEGQLVAFPTETVYGLGADARQTNAVEALYAAKGRPSFNPLIAHVHSVE 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
             ++H     ++  LA+ FWPGPLTLVL L     I PL TA L T   R+P     + L
Sbjct: 73  TAQRHVIWSDIADTLAEAFWPGPLTLVLPLREDHGISPLVTAGLNTLGIRIPAHPAARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A PSAN SG+IS T   H++ + +   I  ++D G   +G+ESTI+ +    
Sbjct: 133 LSVLDGPVAAPSANPSGRISPTTAAHVI-AGLGGRIAAVVDDGPCGVGVESTIIGLATGT 191

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  E ++  +   L +  D +    +PG L SHYAPR+ VRL        E
Sbjct: 192 PL-LLRPGGLATEEIEAVLGHTL-HLRDASDPLTAPGQLLSHYAPRASVRLNVTTPQDGE 249

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             + FG +           LNLS +G L+EAA  LF ++   D   A  IA + IP+ GL
Sbjct: 250 LYLGFGAMECD--------LNLSASGDLREAAAQLFGHLHRLDAR-AQPIAVAPIPDAGL 300

Query: 308 GIAINNRLERAAAPR 322
           G+AIN+RL RAAAPR
Sbjct: 301 GVAINDRLRRAAAPR 315


>gi|297205770|ref|ZP_06923165.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii JV-V16]
 gi|297148896|gb|EFH29194.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus jensenii JV-V16]
          Length = 337

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 114/337 (33%), Positives = 178/337 (52%), Gaps = 18/337 (5%)

Query: 2   QIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +IM   I   + + +A EFL  G  +A PTETVYGL   +    +++ +Y+ K RP+ NP
Sbjct: 3   KIMETQILKKDQIDQAVEFLKNGELVAFPTETVYGLGAIATKEESVKNVYKAKGRPSDNP 62

Query: 60  LICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI  VSD  M+K++A   P  +  L K FWPGPLTL+L L+    +  + T  LKTA FR
Sbjct: 63  LIVTVSDEDMMKQYAKFIPERAEKLIKHFWPGPLTLLL-LVKEGSLPTVVTGGLKTAAFR 121

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
            P    T +LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLE
Sbjct: 122 CPDDELTHELISKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKISAIIDGGATEVGLE 180

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           STI+++  E  + +LRPG +  E L + +  ++      V + + P++PGM   HYAP +
Sbjct: 181 STIIDLSVETPI-VLRPGQITPEELSKVLGEKVLINTGKVSDKTIPKAPGMKYRHYAPSA 239

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNL------SKTGKLKEAAFNLFNYMKI 288
            V +    V     +    +  +  +++ + +L+L      S    LK+A  NLF+ ++ 
Sbjct: 240 PVWV-VDDVKDFSKISYTSDTAVAALDSVLDTLDLPAENKFSLGKDLKDADHNLFSALRF 298

Query: 289 ADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
            DD     +I           +A  NRL +AAA  + 
Sbjct: 299 FDDEASIKTIYVQGFDEGEQSLAYMNRLNKAAAGHHY 335


>gi|257870911|ref|ZP_05650564.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus gallinarum EG2]
 gi|257805075|gb|EEV33897.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus gallinarum EG2]
          Length = 342

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+    +    L +A + L AG  +A PTETVYGL  ++  P A+ ++Y +K RP+ NPL
Sbjct: 1   METKKFS-EEQLSEAAKILAAGGLVAFPTETVYGLGANALLPEAVAQVYAVKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++D   +K +   + P +  L   FWPGPLTL+  + + + +  + T  L TA FR+
Sbjct: 60  IVHLADPEQLKDYVDNLHPAAEKLMAKFWPGPLTLIFSIKNNS-LPSIVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  +I+    PL  PSAN SG+ S T+ +H+L   +  +I  +ID G ++IG+ES
Sbjct: 119 PANKKTLSVIKQAHVPLVGPSANTSGKPSPTSAEHVL-HDLKGKIAGVIDDGTTRIGVES 177

Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E L+  +  E+E   + V E   P++PGM   HYAP +
Sbjct: 178 TVLDLSDPTANPMILRPGAVTKEQLETVLGSEVEIDKHLVSEGERPKAPGMKYKHYAPDT 237

Query: 235 QVRLRAIHVNP------REALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
           +V +      P      ++  +R G +   +I         ++ +     ++ AA  LF 
Sbjct: 238 KVVMVRSEDWPAALDWVKQKRLRAGVLAGPSICETARFETAAVYMYADDTVEAAAKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++  D+  +G   I  ++ P  G+G A  NRL++AA
Sbjct: 298 GLRALDESIAGLEIILAAAFPETGMGSAYMNRLKKAA 334


>gi|83952430|ref|ZP_00961161.1| Sua5/YciO/YrdC family protein [Roseovarius nubinhibens ISM]
 gi|83836103|gb|EAP75401.1| Sua5/YciO/YrdC family protein [Roseovarius nubinhibens ISM]
          Length = 317

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/316 (40%), Positives = 176/316 (55%), Gaps = 13/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+    +A   L  G  +A+PTETVYGL  D+RN  A+ R++E K RP  NPLI HV  I
Sbjct: 14  DAEGHARAAAILRDGGLVALPTETVYGLGGDARNDMAVARIFEAKGRPRFNPLIVHVDSI 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              + +      +  LA+ FWPGPLTLVL L     + PL TA+L T   R+P     ++
Sbjct: 74  DRAQAYVHWSDQADRLAQAFWPGPLTLVLPLRDDAGLSPLVTADLPTLAIRLPAHPVAQR 133

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +  P+A PSAN SG+IS T   H+L + +   I  ++DGG   +GLESTI+ +   
Sbjct: 134 LLSEFAGPVAAPSANPSGRISPTTADHVL-AGLGGRIAAVLDGGACDVGLESTILGL--G 190

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           +   +LRPGGL    ++ A+ + L +         +PG + SHYAP + VRL A    P 
Sbjct: 191 RSPTLLRPGGLPTGPIEAALGMALVHHSTGDPLV-APGQMASHYAPGASVRLNARAAEPG 249

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E  + FG +           LNLS +G L EAA NLF ++   D      IA + +P+ G
Sbjct: 250 ELFLGFGPM--------DCDLNLSASGDLTEAAANLFGHLHALDARAPDGIAVAPVPDTG 301

Query: 307 LGIAINNRLERAAAPR 322
           LG+AIN+RL RAAAPR
Sbjct: 302 LGLAINDRLRRAAAPR 317


>gi|83854875|ref|ZP_00948405.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1]
 gi|83842718|gb|EAP81885.1| Sua5/YciO/YrdC family protein [Sulfitobacter sp. NAS-14.1]
          Length = 314

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 126/323 (39%), Positives = 179/323 (55%), Gaps = 10/323 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   D + + +A   L  G  +A+PTETVYGL  D+RN TA+  +YE K RP+ NPL
Sbjct: 1   MTEILPADPSGISRAATLLQQGALVALPTETVYGLGADARNGTAVAGIYEAKGRPSFNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+D+   +++      +  LA  FWPGP+TLVL L     +  L TA L +   RVP
Sbjct: 61  IIHVADVDQARRYGRWSDTAEILASAFWPGPMTLVLPLADGHGLSSLVTAGLDSVGIRVP 120

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + ++   G P+A PSAN SG+IS T  +H+LS  +   I  ++D G   +GLEST
Sbjct: 121 AHPTARAILRALGGPVAAPSANPSGKISATTAQHVLS-GLEGRIAAVVDDGPCTVGLEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+ +  + +  +LR GGL  E ++ A+   L+    + +   +PG L SHYAP ++VRL 
Sbjct: 180 IIGL-NQPRPTLLRAGGLPSEAIEAALGAPLDVA--DGAEIIAPGQLASHYAPHARVRLN 236

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A      E  + FG       ++    L LS +G L EAA +LF+ +   D      IA 
Sbjct: 237 AQAATDDEVYLGFGAASGSGPDD----LTLSASGDLVEAAAHLFDRLHALDRLR-KPIAV 291

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
           + IP  GLG AIN+RL RAAAPR
Sbjct: 292 APIPETGLGRAINDRLRRAAAPR 314


>gi|304385307|ref|ZP_07367652.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM
           20284]
 gi|304328514|gb|EFL95735.1| Sua5/YciO/YrdC/YwlC family protein [Pediococcus acidilactici DSM
           20284]
          Length = 340

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 109/336 (32%), Positives = 169/336 (50%), Gaps = 20/336 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  I  S  L  A   +  G  +A PTETVYGL  D+ NP A++++Y+ K RP+ NPLI 
Sbjct: 1   MSEIFQSENLADAAAAIQRGELVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           HV+  + V + A +D  S  L   FWPGPLT++L +     + P+ T  L TA FR P  
Sbjct: 61  HVTGPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKPHA-LDPVVTGGLTTAAFRNPDT 119

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T KLIE  G PL  PSAN SG+ S T   H++   +  +I  ++DGG +KIG+EST++
Sbjct: 120 PLTLKLIEQAGVPLVGPSANTSGKPSPTKPAHVM-HDLNGKIAGVLDGGETKIGVESTVL 178

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           ++       +LRPG +  E L   +       + V +   P++PGM   HYAP +QV + 
Sbjct: 179 DMSGAVP-SVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIV 237

Query: 240 AIHVNPREA--LIRFGNVPIKNIENAIISLN-----------LSKTGKLKEAAFNLFNYM 286
                 + A  + +    P+  +  + I  +           +S     + A+ +LF+ +
Sbjct: 238 KDAQWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGL 297

Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  D       I   +    G+G A  NRL+++A  
Sbjct: 298 RTFDGKPQIKVIFAQAFDPTGIGAAYMNRLQKSAGN 333


>gi|163745661|ref|ZP_02153021.1| Sua5/YciO/YrdC family protein [Oceanibulbus indolifex HEL-45]
 gi|161382479|gb|EDQ06888.1| Sua5/YciO/YrdC family protein [Oceanibulbus indolifex HEL-45]
          Length = 310

 Score =  333 bits (856), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 128/315 (40%), Positives = 178/315 (56%), Gaps = 14/315 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L  G  +A+PTETVYGL  D+RN  A+  +Y  K RP+ NPLI H+ DI 
Sbjct: 9   PQGIARAARLLQDGALVALPTETVYGLGADARNGAAVAGIYAAKGRPSFNPLIVHLPDIE 68

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
             K++      +  LA+ FWPG LTLVL L   + +  L TA L +   RVP     +++
Sbjct: 69  TAKRYVQWTDEADRLAQAFWPGALTLVLPLRPDSGLSSLVTAGLASLAVRVPAHPAMRQV 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++    P+A PSAN SG+IS T   H+L + +  +I  ++D G   +GLESTI+ +   +
Sbjct: 129 LQALDGPVAAPSANPSGKISATTAAHVL-AGLDGKIAAVLDDGACSVGLESTIIGLTGPR 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LR GGL  E ++  +   LE    + +   +PG L SHYAP + VRL A    P E
Sbjct: 188 PA-LLRAGGLPSEAIEAVLGQTLEIV--DGAEIIAPGQLASHYAPGAAVRLDAETAGPGE 244

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            L+ FG +        I  LNLS  G L EAA NLF+++   D +G   IA + IP+HGL
Sbjct: 245 VLLGFGTM--------ICDLNLSPAGDLTEAAANLFDHLHQLDATG-QQIAVAPIPDHGL 295

Query: 308 GIAINNRLERAAAPR 322
           G AIN+RL RAAAPR
Sbjct: 296 GRAINDRLARAAAPR 310


>gi|85714355|ref|ZP_01045343.1| Sua5/YciO/YrdC/YwlC [Nitrobacter sp. Nb-311A]
 gi|85698802|gb|EAQ36671.1| Sua5/YciO/YrdC/YwlC [Nitrobacter sp. Nb-311A]
          Length = 360

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 131/310 (42%), Positives = 183/310 (59%), Gaps = 6/310 (1%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             L  G  +A PTETVYGL  D+ N  AI RLY  K RPA NPLI HVSD++  ++ A  
Sbjct: 54  RLLRDGGLVAFPTETVYGLGADAANAEAIARLYRAKGRPAFNPLIAHVSDLAAAQRIARF 113

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           + ++L LA  FWPGPLTLVL   +   +  L+TA L T   RVP     + ++  +G  +
Sbjct: 114 NAIALALADAFWPGPLTLVLPKSAQCPVADLATAGLDTIALRVPAHPVARAILRGFGGAV 173

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SG +S T   H+  S +   I LI+DGG  ++G+ESTIV      +  +LRPG
Sbjct: 174 VAPSANLSGHVSPTTAAHV-QSDLAGRIDLIVDGGPVEVGIESTIVGCF--DRPTLLRPG 230

Query: 196 GLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           G+    ++R +   L       +   P++ GML SHYAPR++VRL A+++   EAL+ FG
Sbjct: 231 GISRADIERVLGRTLASPDPGAADGQPRASGMLASHYAPRAKVRLNAVNLARGEALLAFG 290

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
              +  I+ A+  +NLS+   L+EAA NLF  ++  D SG  +IA   +P+ GLG AIN+
Sbjct: 291 PADLSGIDAAVAVMNLSERRDLEEAAANLFGCLRALDASGVRTIAVMPVPDEGLGEAIND 350

Query: 314 RLERAAAPRN 323
           RL RAA P+ 
Sbjct: 351 RLRRAAVPQG 360


>gi|67459737|ref|YP_247361.1| putative translation factor protein [Rickettsia felis URRWXCal2]
 gi|67005270|gb|AAY62196.1| Putative translation factor protein [Rickettsia felis URRWXCal2]
          Length = 361

 Score =  333 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 171/313 (54%), Gaps = 14/313 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HVS I   K+ 
Sbjct: 54  KAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVSSIEQAKEI 113

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
              + L+  +A+ FWPGPL++V+ L    +I P  TA L T   R+P      +LI   G
Sbjct: 114 GEFNDLATKIAEKFWPGPLSIVVSLKENANIAPSVTAGLNTIAIRIPSYPLALELIRQSG 173

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKKVR 190
            P+A PSAN S  IS TN +H+       +   I+   I  S+ GLESTI++        
Sbjct: 174 VPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSEYGLESTIIDTTTATP-T 232

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           ILR G +  E L+  + V++          ++PGML  HY+P   VRL A ++  RE  +
Sbjct: 233 ILREGFITAEILEEVLGVKVFKVT--NDVVKAPGMLAKHYSPNVPVRLNATNLEDREIGL 290

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPNHG 306
            FGN  +        SLNLS  G+L EAA NL+ Y++I DD         IA + IP   
Sbjct: 291 NFGNSNL----TGKFSLNLSLKGELIEAAANLYAYLRILDDYAASHDVRGIAVAPIPRVN 346

Query: 307 LGIAINNRLERAA 319
           +G AIN+RL+RAA
Sbjct: 347 IGAAINDRLKRAA 359


>gi|227889715|ref|ZP_04007520.1| translation factor (SUA5) [Lactobacillus johnsonii ATCC 33200]
 gi|227849579|gb|EEJ59665.1| translation factor (SUA5) [Lactobacillus johnsonii ATCC 33200]
          Length = 336

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 160/330 (48%), Gaps = 13/330 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I +   + +A   L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPL
Sbjct: 7   MET-KILNKEQIPEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPL 65

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++K+   V   +  L K FWPGPLT++L +   T +    T  L TA FR 
Sbjct: 66  IVTVSDEEMMEKYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 124

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLES
Sbjct: 125 PNDDMTHDLISELGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++  EK   +LRPG +  E +   +  E+            P++PGM   HYAP + 
Sbjct: 184 TIVDLSVEKP-TVLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAP 242

Query: 236 VRLRAIHVN--PREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIADDS 292
           V +     +    +     G   +  +   I S N    GK + +AA NLF  ++  DD 
Sbjct: 243 VLIVDKKEDFSKIQWDDETGVAALDEVLENIDSPNKYSLGKTIDKAAHNLFGALRYFDDE 302

Query: 293 G-ASSIAFSSIPNHGLGIAINNRLERAAAP 321
                I      +  +  A  NRL +AAA 
Sbjct: 303 NKIKRIYVQGFDHGAISAAYMNRLNKAAAG 332


>gi|157804239|ref|YP_001492788.1| bifunctional N5-glutamine S-adenosyl-L-methionine-dependent
           methyltransferase/tRNA (m7G46) methyltransferase
           [Rickettsia canadensis str. McKiel]
 gi|157785502|gb|ABV74003.1| bifunctional N5-glutamine S-adenosyl-L-methionine-dependent
           methyltransferase/tRNA (m7G46) methyltransferase
           [Rickettsia canadensis str. McKiel]
          Length = 312

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 175/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HV+ I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +    + L+  +A+ FW GPL++V+ L    +I    TA L T   R+P      +LI  
Sbjct: 62  EIGEFNDLATKIAEKFWSGPLSIVVPLKKNVNIALSVTAGLNTIAIRMPSYPLALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       E   I+   I  S+ GLESTI++      
Sbjct: 122 SGKPIAAPSANPSNYISPTNAEHVTKHFKDNEEIFILAPEIYQSEYGLESTIIDTTTATP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             +LR G +  E L++   +E+     ETST ++PGML  HY+P+  +RL A ++  +E 
Sbjct: 182 -TLLREGFIMSEVLEKTFGIEI-LKASETSTIKAPGMLAKHYSPKVPIRLNATNLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + FGN  +K        LNLS  G L EAA NL+ Y++I DD         IA + +P+
Sbjct: 240 GLNFGNRNLKG----RFLLNLSPKGDLIEAAANLYAYLRILDDYAASHDIEYIAVAPVPS 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|299537975|ref|ZP_07051261.1| hypothetical protein BFZC1_18255 [Lysinibacillus fusiformis ZC1]
 gi|298726557|gb|EFI67146.1| hypothetical protein BFZC1_18255 [Lysinibacillus fusiformis ZC1]
          Length = 344

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 118/347 (34%), Positives = 176/347 (50%), Gaps = 24/347 (6%)

Query: 1   MQ-IMSITDSNA-----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+ +  + DSN        +A + L+AG  +A PTETVYGL   + N  A+++++E K R
Sbjct: 1   MKTVCKVVDSNVNSQINYTQAVDILNAGEVVAFPTETVYGLGAIATNDLAVKKIFEAKGR 60

Query: 55  PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           P+ NPLI HV     V  +   +  ++     LFWPGPLTLV+       +    TA L 
Sbjct: 61  PSDNPLIVHVGTKEEVAIYIDHITDIAKQCMDLFWPGPLTLVMPAKPNV-LAKSVTAGLS 119

Query: 114 TACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           T   R+P       L++    PLA PSANRSG+ S T   H+L   +   IP I+DGG +
Sbjct: 120 TVGIRMPDHPVALALLQQLQKPLAAPSANRSGKPSPTEAVHVL-DDLEGYIPYILDGGST 178

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE---TSTPQSPGMLKSH 229
            IGLEST+++V  E  V ILRPGG+  E L+  I   ++    E    +TP++PGM  +H
Sbjct: 179 GIGLESTVLDVTHEPPV-ILRPGGITKEMLEAKIGPVIQPTKIEQKLDATPKAPGMKYTH 237

Query: 230 YAPRSQVRLRAIHVNP--------REALIRFGNVPIKNIEN--AIISLNLSKTGKLKEAA 279
           YAP + V L    V          +    R   +  +N E        ++ + G  +E  
Sbjct: 238 YAPNAPVYLIDCDVEKVNEAVLHLQRQGHRVALLAPENFEEIKVDFYFSIGEAGSKEEMG 297

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
             L+N ++  D + A+ I  ++    G+G AI NRLE+A+  +  S 
Sbjct: 298 AALYNALRACDKTTATVILATTTSIEGVGAAIMNRLEKASGGKWYSL 344


>gi|239948185|ref|ZP_04699938.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922461|gb|EER22485.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 312

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/315 (40%), Positives = 179/315 (56%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E++ +G  + +PTETVYG+  D+ N  A  ++++ K RPA+NPLI HV+ I   K
Sbjct: 2   ISKAVEYIKSGKVVVLPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +    + L+  +A+ FWPGPL++V+ L    +I P  T  L T   R+P      +LI  
Sbjct: 62  EIGEFNDLATKIAEKFWPGPLSIVVPLKVNANIAPSVTVGLNTIAIRMPSYPLALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TNV+H+           I+   I  S+ GLESTI++      
Sbjct: 122 SGVPIAAPSANPSNYISPTNVEHVTKHFSENAEIFILAPEIYQSEYGLESTIID-TTTVT 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + V++     ETST ++PGML +HY+P+  VRL AI++  +E 
Sbjct: 181 PTILREGFITAEILEEVLGVKV-LKASETSTIKAPGMLATHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + FGN  +        SLNLS  G L EAA NL+ Y++I DD       SSIA   IP 
Sbjct: 240 GLNFGNSNL----TGKFSLNLSAKGNLIEAAANLYAYLRILDDYAAAHDVSSIAVVPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|254557153|ref|YP_003063570.1| SUA5 family translation factor [Lactobacillus plantarum JDM1]
 gi|254046080|gb|ACT62873.1| SUA5 family translation factor [Lactobacillus plantarum JDM1]
          Length = 339

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 109/339 (32%), Positives = 172/339 (50%), Gaps = 25/339 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   +     +  A   L AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPL
Sbjct: 1   MET-KVYTPAEIPAAAALLTAGQLVAFPTETVYGLGADATNVDAVKQVYLAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+D+  V++ A  +   +  L K FWPGPLT++  L     + P  T  L+TA FR 
Sbjct: 60  IVHVADVETVERFAQPLSEAAKKLIKAFWPGPLTMIFKLKPDA-LAPEVTGGLQTAAFRN 118

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       LI   G P+  PSAN SG+ S T  +H+L   +  +I  I+D G +K+G+ES
Sbjct: 119 PDNEATLALIRAAGTPIVGPSANTSGKPSPTTAQHVL-HDLRGKIAGILDDGPTKVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQ 235
           T++++  ++   ILRPG +  E ++R I + ++   + V     P++PGM   HYAP +Q
Sbjct: 178 TVLDLSTDQPA-ILRPGAVTPEAIERVIGMPVQTELHHVGAKEVPKAPGMKYKHYAPNAQ 236

Query: 236 VRLRAIHVNPREALIRFGNVPIK-------------NIENAIISLNLSKTGKLKEAAFNL 282
           V +     +  EAL       +               I +     +L +   ++ A+  L
Sbjct: 237 VYIVDRSEDWPEALAWAAQQDVPMGVMATDDILTNNQIPDNCEQFSLGE--DIQSASREL 294

Query: 283 FNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D ++    I   +  N GLG+A  NRL ++A 
Sbjct: 295 FAGLRHFDTETEIKDILCQAFENKGLGLAYMNRLNKSAG 333


>gi|299782950|gb|ADJ40948.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 343

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 103/332 (31%), Positives = 161/332 (48%), Gaps = 19/332 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     +++A + + AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS
Sbjct: 6   IFQPAEVKQAAKLIQAGQLVAFPTETVYGLGADATNEEAVKQVYLAKGRPSDNPLIVHVS 65

Query: 66  DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            ++MV+   A +   +  L   FWPG LT++L +   T +    T  L T  FR P C  
Sbjct: 66  SLAMVEHFAAEIPAKAKQLMDRFWPGSLTIILRVKPGT-LSKTVTGGLDTVAFRFPDCQT 124

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T  LI   G P+  PSAN SG+ S T   H+    +  +I  IID G +++G+EST++++
Sbjct: 125 TLDLISQAGVPIVGPSANTSGKPSPTTANHVY-HDLNNKIAGIIDNGPTRVGVESTVLDM 183

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
              + V ILRPG +  + ++  I       + V +   P++PGM   HYAP +QV +   
Sbjct: 184 STSQPV-ILRPGAVTKQDIEGVIGSIDINHHQVKQDEVPKAPGMKYKHYAPNAQVYIVDP 242

Query: 242 HVNPREALIRFG----NVPIKNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIAD 290
             +  E           V +   +  + +   S           ++EA+ + F  ++  D
Sbjct: 243 ADDWGEVAAVIAQSKEQVGLMATDQVLHAHVWSVQADQFSLGTGVQEASAHFFEGLRDFD 302

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                  I        GLG A  NRL ++A  
Sbjct: 303 NQEEIHQIFCQGFEPTGLGAAYMNRLNKSAGG 334


>gi|304438783|ref|ZP_07398711.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372785|gb|EFM26363.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 354

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 104/343 (30%), Positives = 165/343 (48%), Gaps = 27/343 (7%)

Query: 2   QIMSITDS---NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ I +      +++    L  G  +  PTETVYGL  +  N  A++ +Y  K RP+ N
Sbjct: 4   KIIKIENEFEREKIKEVASALRDGKLVVFPTETVYGLGGNGLNEDALKNIYVAKGRPSDN 63

Query: 59  PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI H++D+ M+       P     L   FWPGPLTL+ +  S   +   +T  L T   
Sbjct: 64  PLILHIADLDMLDTLVRDIPKDAKLLIDKFWPGPLTLIFNRKSI--VPDRATGGLDTVAI 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       +++    P+A PSAN SG+ S T+  H++   +   +  I+D   S +G+
Sbjct: 122 RMPSDKVAHAILKEAKVPVAAPSANLSGKPSPTSTAHVI-EDLDGRVDYIVDSTRSFVGI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCV---DETSTPQSPGMLKSHYAP 232
           EST+V++     + ILRPG +  E LK  I  V  +      D+ S P+SPG    HYAP
Sbjct: 181 ESTVVDMTVNPPM-ILRPGYITYEDLKSVIPDVCYDNTTIDKDDKSVPKSPGQKYRHYAP 239

Query: 233 RSQVRLRAIHVN--------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278
            +        VN               ++  +   +  +K IE  ++ L+L     L +A
Sbjct: 240 SANCYTYVGDVNLVRDKIKEEINKNKDKKICVIATDRVLKEIEEDVLKLSLGSGEDLLDA 299

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           + NLF  +++ADD+    I        GLG+ I NRL +A++ 
Sbjct: 300 SHNLFYNLRVADDNDVDIIFCEGFEQVGLGVGIMNRLTKASSG 342


>gi|218532361|ref|YP_002423177.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium
           chloromethanicum CM4]
 gi|218524664|gb|ACK85249.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium
           chloromethanicum CM4]
          Length = 329

 Score =  332 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 127/299 (42%), Positives = 171/299 (57%), Gaps = 3/299 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+           D  +L LA
Sbjct: 33  VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           K FWPGPLTLV+       +  L+ A L +   RVP     + L+E  G P+A PSANRS
Sbjct: 93  KKFWPGPLTLVVPAAPDCSVCDLARAGLDSVALRVPAHDIARALLERVGRPVAAPSANRS 152

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T+  H+L+  +   I  ++DGG   +G+EST+V        R+LRPGG+  E L 
Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLG-GPPRLLRPGGVTREALA 210

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
             +    E   D  S P  PG+L SHYAPR+ VRL A  + P EA++ FG      +++A
Sbjct: 211 AVLGFAPEAAGDPGSRPVGPGLLASHYAPRAGVRLEARIIEPSEAVLLFGAFRPAGLDHA 270

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
               +LS+ G   EAA  LF  ++  D SGA +IA   +P  GLG AIN+RL RAAAPR
Sbjct: 271 AAVESLSERGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329


>gi|312871989|ref|ZP_07732071.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092566|gb|EFQ50928.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2062A-h1]
          Length = 331

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 107/326 (32%), Positives = 169/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L +   T +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLTRPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   + + S    + EAA NLF  ++  D +    
Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326


>gi|304321289|ref|YP_003854932.1| Sua5/YciO/YrdC family protein [Parvularcula bermudensis HTCC2503]
 gi|303300191|gb|ADM09790.1| Sua5/YciO/YrdC family protein [Parvularcula bermudensis HTCC2503]
          Length = 308

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 132/314 (42%), Positives = 176/314 (56%), Gaps = 15/314 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ KA E L +G  + +PTETVYGLA D+    AI RLYEIK RP  NPLI HV D    
Sbjct: 9   SIDKAAEQLRSGGLVGLPTETVYGLAADATQGEAIARLYEIKGRPHFNPLIVHVLDRRDA 68

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
                ++P +  L   FWPGPLTLVL       +  ++ A L T   R P     + L+ 
Sbjct: 69  AHITEMEPRADQLISRFWPGPLTLVLPSKRGGPVADIALAGLDTVAIRAPLHPVARALLA 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+  PSANRSG+IS T   H+++     +IP ++DGG   +GLESTIV +  E+  
Sbjct: 129 VFGGPIVAPSANRSGRISPTIAGHVVAE-FGTDIP-VLDGGPCTVGLESTIVGLTGERP- 185

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LRPGG+  + ++  +    E   +      +PGM+ SHYAP + VRL A      E L
Sbjct: 186 TLLRPGGITAQQIEEILG---EPLAEPGGGIDAPGMMASHYAPDAAVRLDAKAATEDEVL 242

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           + FG  P         +L+LS +G L EAA NLF +M+  D  G   IA + IP  GLG 
Sbjct: 243 LGFGGTP-------GATLDLSPSGDLIEAAANLFAHMRELDRHG-RPIAVAPIPEDGLGK 294

Query: 310 AINNRLERAAAPRN 323
           AIN+RL RAAAPRN
Sbjct: 295 AINDRLRRAAAPRN 308


>gi|300361414|ref|ZP_07057591.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03]
 gi|300354033|gb|EFJ69904.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri JV-V03]
          Length = 334

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 110/330 (33%), Positives = 162/330 (49%), Gaps = 13/330 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     + +A E L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPL
Sbjct: 5   MET-KIFSKKQIPEAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPL 63

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++ +   V   +  L K FWPGPLT++L +   T +    T  L TA FR 
Sbjct: 64  IVTVSDEKMMENYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 122

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLES
Sbjct: 123 PDDEMTHDLISELGKPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTEIGLES 181

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++  E    +LRPG +  E + + +  E+   +        P++PGM   HYAP + 
Sbjct: 182 TIVDLSVETP-TVLRPGEITPEEISKVLGEEVLMNKGTTKTKGVPKAPGMKYRHYAPSAP 240

Query: 236 VRLRAIHVNPREALIR--FGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIAD-D 291
           V +     +  +       G   +  + + I S N    GK + +AA NLF  ++  D +
Sbjct: 241 VFIVDKEADFSKIKWDKETGVAALDEVLDKIDSSNKYSLGKTIDKAAHNLFGALRYFDSE 300

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +    I      +  +  A  NRL +AAA 
Sbjct: 301 NNIKRIYVQGFDHGAISPAYMNRLNKAAAG 330


>gi|154482619|ref|ZP_02025067.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC
           27560]
 gi|149736519|gb|EDM52405.1| hypothetical protein EUBVEN_00286 [Eubacterium ventriosum ATCC
           27560]
          Length = 359

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 161/345 (46%), Gaps = 31/345 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   D + + +A E +  G  +A PTETVYGL  D+ N  A  ++Y  K RP+ NPLI H
Sbjct: 14  VDNIDMDTINQAGEIIRQGGLVAFPTETVYGLGADALNEEAAAKIYAAKGRPSDNPLIAH 73

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           ++D+ M+K     + P++  L   FWPGP+TL+ +   +  +   +T  L T   R P  
Sbjct: 74  IADLEMLKPLVEEIPPVAEKLMDAFWPGPMTLIFN--KSNLVPKGTTGGLDTVAVRYPNH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + LI+  G  +A PSAN SG+ S T  +H++   +   I +IIDGG+  +GLESTI+
Sbjct: 132 PIAQALIKAAGVSIAAPSANLSGKPSPTLGEHVI-DDMDGRIDMIIDGGMVGMGLESTII 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPRSQV 236
           +V     + ILRPG +  E +K  +    E         +   P++PGM   HYAP +  
Sbjct: 191 DVTVNPPM-ILRPGFITYEMVKEIVPDATEDRTIFTKPTKEFKPKAPGMKYRHYAPSADY 249

Query: 237 RLRA-IHVNPREALIRFGNVPIKN-------------------IENAIISLNLSKTGKLK 276
            +     V   E +I   N                        +  +I  ++L    K +
Sbjct: 250 TIYKGDEVKVAEKIIELANEKADEGKITGIITADQHLHMYQGRLNKSIKVVSLGDLEKPE 309

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A +LF  ++  D      I   +     +G AI NRL +AA  
Sbjct: 310 TVANHLFKALRDFDKVDTEFIFGEAFSEKNVGQAIMNRLTKAAGY 354


>gi|240140923|ref|YP_002965403.1| hypothetical protein MexAM1_META1p4495 [Methylobacterium extorquens
           AM1]
 gi|240010900|gb|ACS42126.1| conserved hypothetical protein with Sua5/YciO/YrdC domain
           [Methylobacterium extorquens AM1]
          Length = 329

 Score =  332 bits (852), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 127/299 (42%), Positives = 170/299 (56%), Gaps = 3/299 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+           D  +L LA
Sbjct: 33  VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           K FWPGPLTLV+       +  L+ A L +   RVP     + L+E  G P+A PSANRS
Sbjct: 93  KKFWPGPLTLVVPAAPGGSVCDLARAGLDSVALRVPAHDIARALLERVGRPVAAPSANRS 152

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T+  H+L+  +   I  ++DGG   +G+EST+V        ++LRPGG+  E L 
Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLG-GPPQLLRPGGVTREALA 210

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
             +    E   D  S P  PG+L SHYAPR+ VRL A  V P EA++ FG      ++ A
Sbjct: 211 AVLGFAPEAASDPGSRPVGPGLLASHYAPRAGVRLEARTVEPSEAVLLFGAFRPAGLDRA 270

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
               +LS+ G   EAA  LF  ++  D SGA +IA   +P  GLG AIN+RL RAAAPR
Sbjct: 271 AAVESLSERGDAAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329


>gi|332637162|ref|ZP_08416025.1| SUA5 family translation factor [Weissella cibaria KACC 11862]
          Length = 342

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 103/343 (30%), Positives = 163/343 (47%), Gaps = 18/343 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++ L  A   +  G  +A PTETVYGL  D+ N  A+ ++Y  K RP+ NPL
Sbjct: 1   MAETKIWSADELPAAVRAIKRGSLVAFPTETVYGLGADAFNEKAVSKVYAAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+D + V + A V+  +  L   FWPGPLT++L +   T +    T  L T   R+P
Sbjct: 61  IVHVADKAQVDRFAVVNAWAEKLMDAFWPGPLTMILPVKPGT-VSTTVTGGLDTVAARMP 119

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T+ LI     P+  PSAN SG+ S T  +H+    +  +I  I+D G +KIG+EST
Sbjct: 120 DNDVTRALIREADAPMVGPSANTSGKPSPTTAQHVY-HDLHGKISGILDDGATKIGVEST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQV 236
           ++++  +    +LRPG +    ++  + V ++     VD    P++PGM   HYAP   V
Sbjct: 179 VIDLSTDTPA-VLRPGKITPAQIEAVLGVPVDSEIKHVDADEAPKAPGMKYRHYAPDKDV 237

Query: 237 RLRAIHVN----------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
            + A                   +   N  I   + A +    S       AA  LF  +
Sbjct: 238 YMVAPEDWTQAIIWAQSQLEPVGLMLTNDLIVQHQLAGMDFVWSLGDNGDTAAAKLFAGL 297

Query: 287 KIADD-SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQRI 328
           +  DD     ++  +++PN     A NNRL +++     ++ +
Sbjct: 298 RHFDDRKDVLTVLVAAMPNTPENSAYNNRLGKSSGGHWVTELL 340


>gi|163814228|ref|ZP_02205619.1| hypothetical protein COPEUT_00381 [Coprococcus eutactus ATCC 27759]
 gi|158450473|gb|EDP27468.1| hypothetical protein COPEUT_00381 [Coprococcus eutactus ATCC 27759]
          Length = 350

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 108/341 (31%), Positives = 164/341 (48%), Gaps = 28/341 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D +   +A E L +G  +A PTETVYGL  D+ NP A  ++Y  K RP+ NPLI H++
Sbjct: 10  VDDEHMYEQAAEILRSGGLVAFPTETVYGLGGDALNPDASHKIYSAKGRPSDNPLIVHIA 69

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D   V + A  V   +  L + FWPGPLT++L+      +   +T  L T   R+P    
Sbjct: 70  DTDSVYELAEYVSDDTKKLMEAFWPGPLTIILN--KKAVVPHTTTGGLDTVAIRMPSHPV 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             KLI+  G  +A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV++
Sbjct: 128 AMKLIKDSGVYIAAPSANLSGRPSPTTAHHV-QQDMDGRIDMIIDGGAVGIGIESTIVDM 186

Query: 184 QCEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLR 239
             ++   ILRPG +  E +K  +  V ++  +   +    P++PGM  +HYAP+ ++ + 
Sbjct: 187 TGDRP-TILRPGYITPEMIKNIVGDVTIDPAITGMNNALRPKAPGMKYTHYAPKGELSIV 245

Query: 240 AIHVNPREALIR--FGNVPIKNIENAIIS----------------LNLSKTGKLKEAAFN 281
                     IR        +  + AI+                  +          +  
Sbjct: 246 EGERLVAAERIRSLVAEKRAQGYKTAILCDTENVGLYNDGVCENIYDAGSKKNEITVSAG 305

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           L++ ++  DD GA  I   S     +G AI NRL +AA  R
Sbjct: 306 LYSLLRTCDDIGAQYIYSESFEEGDMGYAIMNRLIKAAGHR 346


>gi|295425484|ref|ZP_06818177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM
           11664]
 gi|295064823|gb|EFG55738.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus amylolyticus DSM
           11664]
          Length = 337

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 163/333 (48%), Gaps = 17/333 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     +  A + L  G  +A PTETVYGL   + N  +++ +Y  K RP+ NPL
Sbjct: 5   MET-RIFSEEQIDDAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPL 63

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++++A  V   +  L K FWPGPLT++L +   + +    T  L T  FR 
Sbjct: 64  IVTVSDEDMMRRYAKEVPERAEKLIKHFWPGPLTILLFVKPGS-LPDAVTGGLDTVAFRC 122

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI+  G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLES
Sbjct: 123 PDDKLTHTLIKKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIIDGGPTRVGLES 181

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  +  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP + 
Sbjct: 182 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKEIPKAPGMKYRHYAPSAP 240

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG------KLKEAAFNLFNYMKIA 289
           V +   H      +    N  +   +N +  ++L +         L +A  NLF  ++  
Sbjct: 241 V-MVIDHPEDFAKIDLNENTGVMATKNVLAKIDLPQENKFNLGDDLIQADHNLFGGLRYF 299

Query: 290 DD-SGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           DD      I           +A  NRL +AAA 
Sbjct: 300 DDKKNIHQIYVEGFDEGEASLAYMNRLNKAAAG 332


>gi|160894646|ref|ZP_02075421.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50]
 gi|156863580|gb|EDO57011.1| hypothetical protein CLOL250_02197 [Clostridium sp. L2-50]
          Length = 359

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 110/350 (31%), Positives = 170/350 (48%), Gaps = 29/350 (8%)

Query: 1   MQIM----SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+ +     + +    RKA + L +G  +A PTETVYGL  D+ NP A  ++Y  K RP+
Sbjct: 13  MKTIVAKADLENEELFRKASDILKSGGLVAFPTETVYGLGGDALNPKASEKIYSAKGRPS 72

Query: 57  MNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
            NPLI H++D + V +  A V   +  L + FWPGPLT++        +   +T  L+T 
Sbjct: 73  DNPLIVHIADTASVWELVAEVSTQAQMLMEAFWPGPLTIIF--KKKDIVPHETTGGLETV 130

Query: 116 CFRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      KLI+  G  +A PSAN SG+ S T   H+    +   I +I+DGG   I
Sbjct: 131 AIRMPSHPAAMKLIKDSGVYIAAPSANLSGRPSPTTAAHV-EEDLSGRIDMILDGGPVGI 189

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC---VDETSTPQSPGMLKSHY 230
           G+ESTIV+V  ++   ILRPG +  + +K  +  V ++     VD    P++PGM  +HY
Sbjct: 190 GIESTIVDVTGDRP-TILRPGYISADMIKNILGDVMIDPALESVDMKVRPKAPGMKYTHY 248

Query: 231 APRSQVRLRAIHVNPREALIR--FGNVPIKNIENAII-------------SLNLSKTGKL 275
           AP+ ++ +         A I         +  + A++              L+       
Sbjct: 249 APKGKLTIVEGEREKVAAKIAELVACKQAEGYKTAVLCDTENTDLYSCENVLDAGSKKNE 308

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
              + +L+  +++ DD GA  I   S     +G AI NRL +AA  R  S
Sbjct: 309 ITVSSSLYRLLRLCDDIGADYIYSESFREGDMGYAIMNRLIKAAGHRIIS 358


>gi|254293530|ref|YP_003059553.1| Sua5/YciO/YrdC/YwlC family protein [Hirschia baltica ATCC 49814]
 gi|254042061|gb|ACT58856.1| Sua5/YciO/YrdC/YwlC family protein [Hirschia baltica ATCC 49814]
          Length = 309

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 127/318 (39%), Positives = 178/318 (55%), Gaps = 14/318 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+     + + +A + +  G  +AIPTETVYGLA D+ N  A+ R+Y  K RP+ NPLI 
Sbjct: 4   IIQSPSHDTMEQAAQIIRDGGIVAIPTETVYGLAADATNGEAVARIYAAKGRPSFNPLIS 63

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           HV+D+ M ++ A+  P +L L + FWPGPLTLVL       +  L+TA L T   R P  
Sbjct: 64  HVNDMEMAEELANFSPAALELVEKFWPGPLTLVLPKTKYCPVSALATAGLDTIALRAPRH 123

Query: 123 FTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + LI     PLA PSAN S  +S T  +H+ +  +   + LI+DGG  K G+EST+V
Sbjct: 124 IVARGLIAAARCPLAAPSANPSEALSPTTAQHV-ADMLSGNVDLILDGGPCKTGVESTVV 182

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +V  E+   +LRPG L    ++             +    SPGM++ HYAP +++RL AI
Sbjct: 183 SVVGERPA-LLRPGALPRAEIEAITG----PLDAPSEKIASPGMMRRHYAPNAKLRLDAI 237

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                EA + FG    K      ++ NLS +G L EAA NLF  ++I D      IA + 
Sbjct: 238 SPEKGEAYLGFGPSKHK------VAANLSTSGDLLEAAANLFAMLRILD-LQYDRIAIAP 290

Query: 302 IPNHGLGIAINNRLERAA 319
           IP+ GLG AIN+RL+RAA
Sbjct: 291 IPHEGLGEAINDRLKRAA 308


>gi|164688897|ref|ZP_02212925.1| hypothetical protein CLOBAR_02545 [Clostridium bartlettii DSM
           16795]
 gi|164602101|gb|EDQ95566.1| hypothetical protein CLOBAR_02545 [Clostridium bartlettii DSM
           16795]
          Length = 346

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 100/337 (29%), Positives = 164/337 (48%), Gaps = 22/337 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   D   ++K  E L AG  +  PTETVYGL  ++ +  A+ ++Y+ K RP+ NPLI H
Sbjct: 10  VDNIDMEEIKKQAEILRAGETVIFPTETVYGLGANALDEEAVSKIYKAKGRPSDNPLIVH 69

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + D   V     SV   +  +   FWPGP+T++L+      I   ++  L T   R+P  
Sbjct: 70  IGDKKQVYNLVQSVTKEAEIVMDKFWPGPITIILN--KKDIIPKRTSGGLDTVAIRMPSN 127

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI+    P+A PSAN SG+ S T  KH+    +   +  II G     GLEST++
Sbjct: 128 KIANALIKEANIPIAAPSANISGRPSPTRAKHVY-EEMNHRVSGIIMGNDCVYGLESTVL 186

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVR 237
           ++  E    ILRPG +  E L++ +  V+L+  +++       ++PGM  +HY+P ++V 
Sbjct: 187 DLTGEIP-TILRPGSITKEQLEKELGNVQLDAALEKKEDNIKAKAPGMKYTHYSPNAEVY 245

Query: 238 LRAIHV------------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           + +                  +  ++   + +K  E   I   +     L++ A NLF+ 
Sbjct: 246 IVSGEQTNVIDKINTLIEENNDKNLKTCVICLKCNEKQYIGKTICLGETLEDVASNLFDA 305

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  AD+     I   S  N G+G AI NRL ++A  +
Sbjct: 306 LIQADEEKCDIIYSESFTNEGIGCAIMNRLLKSAGYK 342


>gi|299143533|ref|ZP_07036613.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518018|gb|EFI41757.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 349

 Score =  332 bits (851), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 166/346 (47%), Gaps = 30/346 (8%)

Query: 2   QIMSITDSNALR-----KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           +++ I D++ ++     +    L  G  +  PTETVYGL  +  + TA + ++  K RP 
Sbjct: 4   KVIKI-DADNIKRENITEITNALKNGKLVVFPTETVYGLGANGLDETACKNIFNAKGRPG 62

Query: 57  MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
            NPLI H+++IS +      V   +  L  +FWPGPLT++     ++ I  + +A L T 
Sbjct: 63  DNPLILHIAEISQLDDLVEDVSESARDLIDMFWPGPLTMIF--KKSSKIPDVVSAGLDTV 120

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     +++++    P+A PSAN SG+ S T+ K +    +  ++ +I+DGG + +
Sbjct: 121 AVRMPSHKIAREILKDCMIPIAAPSANLSGKPSPTSFKRVF-EDLDNKVDIIVDGGRADV 179

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHY 230
           G+EST+V++     + ILRPG +  E LK  I             +   P+SPG    HY
Sbjct: 180 GIESTVVDMTVNPPM-ILRPGKVTTEDLKIIIPDIKIDSATIDSSDGKIPKSPGQKYKHY 238

Query: 231 APRSQVRLRAIHVN----------PREALIRFGNVPIKNIENAIIS----LNLSKTGKLK 276
           APR++      +++               ++ G +  +  ++  I     +NL     + 
Sbjct: 239 APRAEAYCFVGNLDNVVKEINKRISENKNLKIGVLATEETKDYYIGAHILINLGSRENMS 298

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           E A NLF  ++  DD     I        G+G+ I NRL +A   R
Sbjct: 299 EIASNLFEALRECDDEKVDYIYTEGFELRGIGVGIMNRLLKACGGR 344


>gi|259415145|ref|ZP_05739067.1| translation factor SUA5 [Silicibacter sp. TrichCH4B]
 gi|259349055|gb|EEW60809.1| translation factor SUA5 [Silicibacter sp. TrichCH4B]
          Length = 319

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 130/317 (41%), Positives = 174/317 (54%), Gaps = 13/317 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E L AG  +A PTETVYGL  D+ N  A+  +Y  K RP+ NPLI HV+D++
Sbjct: 15  PEGIARAAELLAAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPLIAHVADVA 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
             +     +  +  +A  FWPGPLTLVL L     + PL TA L T   RVP     + L
Sbjct: 75  AAQTLVQWNEWAEAMAAAFWPGPLTLVLPLRPDHPVSPLVTAGLDTLAVRVPAKACARDL 134

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A PSAN SG+IS T   H+  + +  +I  I+D G   +G+ESTI+ +  + 
Sbjct: 135 LAAVARPIAAPSANPSGRISPTTAAHV-RAGLGGKIAAILDDGPCGVGVESTILGLAGDA 193

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            V +LRPGGL  E ++ A+   L    +      +PG L+SHYAP + VRL A    P E
Sbjct: 194 PV-LLRPGGLAAEDIEAALGCPLAE-RNAADPLTAPGQLQSHYAPNASVRLAARDFAPGE 251

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             + FG             LNLS +G L EAA NLF Y+   D      IA + +P HGL
Sbjct: 252 VSLGFGP--------GAFDLNLSPSGDLNEAAANLFGYLHQLDAME-RPIAVAPVPEHGL 302

Query: 308 GIAINNRLERAAAPRNQ 324
           GIAIN+RL RAAAPR+ 
Sbjct: 303 GIAINDRLRRAAAPRDS 319


>gi|227486773|ref|ZP_03917089.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235243|gb|EEI85258.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 344

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 110/340 (32%), Positives = 168/340 (49%), Gaps = 24/340 (7%)

Query: 2   QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D++A++KA  F+ +G  +A PTETVYGL  D  N  A R++++ K RP+ 
Sbjct: 4   EILKIDRENIDTDAIKKAANFIKSGQLVAFPTETVYGLGADGINDEACRKIFKAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           NPLI H+S ISM+                 WPGP+TL+     +  I    TA   T   
Sbjct: 64  NPLILHISHISMLDNLVEEITDKHRKLFELWPGPMTLIF--KKSKSIPDAVTAGGDTVAI 121

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R P     + LI     P+A PSAN SG+ S TN   +    +   IP+IIDGG S IG+
Sbjct: 122 RFPSDQIARALITEADTPIAAPSANISGRPSPTNASDVY-QDMDGIIPVIIDGGESNIGI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234
           EST++++  ++ + ILRPG    E LK  +S     +  VD +  P+SPG    HYAP++
Sbjct: 181 ESTVIDLSGDEPI-ILRPGFYTYEFLKDILSDMRLDDSLVDSSKIPKSPGQKYKHYAPKA 239

Query: 235 QVRLRAIHVNPREALI----------RFGNVPIKNIE---NAIISLNLSKTGKLKEAAFN 281
           ++R+      P   L           + G +  +  +   N+   ++L     L   +  
Sbjct: 240 KLRVFIGEDVPTHLLSEAEKYKSDGKKVGILAFEEDKEKFNSYPYISLGSRKDLSTMSHV 299

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           LF+ ++  D  G   I    +    LG +I NR+++AAA 
Sbjct: 300 LFSSLREMDRLGVDLILAEGVKEKHLGKSIMNRMKKAAAN 339


>gi|118589276|ref|ZP_01546682.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain protein [Stappia
           aggregata IAM 12614]
 gi|118437976|gb|EAV44611.1| Sua5/YciO/YrdC/YwlC protein family:SUA5 domain protein [Stappia
           aggregata IAM 12614]
          Length = 331

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 140/329 (42%), Positives = 186/329 (56%), Gaps = 10/329 (3%)

Query: 3   IMSITDSN-----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
            + I D+N          C  L AG  +A+PTETVYGLA D+ N TA  +++  K RP  
Sbjct: 5   TLDIADANWQAAPEADAVCAALMAGELVAVPTETVYGLAADATNGTACAKIFAAKGRPQF 64

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           NPLI HV  +     H   D  +L LA+ FWPGPLTLV+   + + I  L+TA L+T   
Sbjct: 65  NPLISHVQTLGAALDHGVFDERALALAEAFWPGPLTLVVPKRAGSPISDLATAGLQTVAL 124

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP     + L E  G PLA PSANRSG+IS T  + ++ + +   +  +ID G   +G+
Sbjct: 125 RVPVGPVMRFLAEKTGRPLAAPSANRSGKISPTRAEDVV-ADLGPSLSFVIDAGACAVGI 183

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE--TSTPQSPGMLKSHYAPRS 234
           ESTIV +  +   R+LRPGGL  E ++R +   LE    +     P +PGML SHYAP +
Sbjct: 184 ESTIVGL-VDGTPRLLRPGGLAREDIERVLGQPLEGASPDMRPDAPAAPGMLTSHYAPDA 242

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
            + L A  V+  + L+ FG   +   E A    NLS TG L EAA NLF  M+  D  G 
Sbjct: 243 AMLLNASEVSAGDGLLSFGTNRLPGAELAKAEFNLSPTGGLAEAAANLFRAMRFLDAQGV 302

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRN 323
           S+I    IP+ GLG AIN+RL RAAAPR+
Sbjct: 303 STIKVQFIPSFGLGEAINDRLRRAAAPRD 331


>gi|28378948|ref|NP_785840.1| SUA5 family translation factor [Lactobacillus plantarum WCFS1]
 gi|300766723|ref|ZP_07076640.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308181158|ref|YP_003925286.1| SUA5 family translation factor [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271785|emb|CAD64691.1| SUA5 family translation factor (putative) [Lactobacillus plantarum
           WCFS1]
 gi|300495823|gb|EFK30974.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|308046649|gb|ADN99192.1| SUA5 family translation factor [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 339

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   +     +  A   L AG  +A PTETVYGL  D+ N  A++++Y  K RP+ NPL
Sbjct: 1   MET-KVYTPAEIPAAAALLTAGQLVAFPTETVYGLGADATNVDAVKQVYLAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+D+  V++ A  +   +  L K FWPGPLT++  L     + P  T  L+TA FR 
Sbjct: 60  IVHVADVETVERFAQPLSEAAKKLIKAFWPGPLTMIFKLKPDA-LAPEVTGGLQTAAFRN 118

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       LI   G P+  PSAN SG+ S T  +H+L   +  +I  I+D G +K+G+ES
Sbjct: 119 PDNEATLALIRAAGTPIVGPSANTSGKPSPTTAQHVL-HDLRGKIAGILDDGPTKVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQ 235
           T++++  +K   ILRPG +  E ++R I + ++   + V     P++PGM   HYAP +Q
Sbjct: 178 TVLDLSTDKPA-ILRPGAVTPEAIERVIGMPVQTELHHVGAKEVPKAPGMKYKHYAPNAQ 236

Query: 236 VRLRAIHVNPREALIRFGNVPIK-----------NIENAIISLNLSKTGKLKEAAFNLFN 284
           V +     +  EAL       +            N +        S    ++ A+  LF 
Sbjct: 237 VYIVDRSEDWPEALAWAAQQDVPMGVMATDDILTNNQIPANCEQFSLGEDIQSASRELFA 296

Query: 285 YMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D ++    I   +  N GLG+A  NRL ++A 
Sbjct: 297 GLRHFDTETEIKDILCQAFENKGLGLAYMNRLNKSAG 333


>gi|298294372|ref|YP_003696311.1| Sua5/YciO/YrdC/YwlC family protein [Starkeya novella DSM 506]
 gi|296930883|gb|ADH91692.1| Sua5/YciO/YrdC/YwlC family protein [Starkeya novella DSM 506]
          Length = 335

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 139/314 (44%), Positives = 183/314 (58%), Gaps = 11/314 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             L  G  +A+PTETVYGLA D+ +P A+  LY  K RP+ NPLI HV DI   ++   +
Sbjct: 25  RVLKVGGLVALPTETVYGLACDATDPHAVAGLYAAKGRPSFNPLIAHVPDIDAARRVGHL 84

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
            P +  LA+ FWPGPLTLV+  +       L+ A L +   RVP     + ++   G P+
Sbjct: 85  TPAAETLARRFWPGPLTLVVPAIEGAT-SELARAGLSSVAIRVPAHPVAQAVLRAAGRPI 143

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG +S T+  H+ S+ +   I LI+D G S +G+ESTI++   E  V +LRPG
Sbjct: 144 AAPSANRSGHVSPTSAAHV-SADLDGRIDLILDAGASAVGVESTILDCTGEVPV-MLRPG 201

Query: 196 GLEIETLKRAISVELEYC-------VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           GL  E +K A+   L           +    P +PGML SHYAP   VRLRA  V P EA
Sbjct: 202 GLPREAIKEALGAPLASPAPRVVEEAEAGEAPLAPGMLASHYAPTIPVRLRAREVKPGEA 261

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
           L+ F        E A+  L+LS TG L EAA NLF +++  D SGA +IA  ++P HGLG
Sbjct: 262 LLTFAGAQPPGAEQAVARLDLSPTGDLVEAAANLFAHLRALDSSGAIAIAVVALPRHGLG 321

Query: 309 IAINNRLERAAAPR 322
            AI +RL RAAAPR
Sbjct: 322 EAIADRLRRAAAPR 335


>gi|229917062|ref|YP_002885708.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sp. AT1b]
 gi|229468491|gb|ACQ70263.1| Sua5/YciO/YrdC/YwlC family protein [Exiguobacterium sp. AT1b]
          Length = 336

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 20/335 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     +SN + +    L AG  IA+PTETVYGLA D+ N  AIR+++E K RP+ NPL
Sbjct: 1   MET-KWINSNEIEEGVRLLQAGEIIAMPTETVYGLAGDAMNDVAIRKIFEAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++ I         + P++  L   FWPG LT++L   S      L TA L +   R+
Sbjct: 60  IVHIASIEQTSLFVDSIPPVAKRLMDAFWPGALTIILP--SNGRASSLVTAGLDSIGLRM 117

Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +LI   G  LA PSANRSG+ S T  +H+ +  +   I  I+DGG + IG+ES
Sbjct: 118 PNHPAALELIRKSGLGLAAPSANRSGRPSPTTAQHV-ADDLNGRIAGIVDGGPTGIGVES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQV 236
           T+V+   +  V ILRPGG+  E ++  I          ++ + P+SPGM  +HYAP + V
Sbjct: 177 TVVDCTGD-TVTILRPGGVTREEMEAVIGPVALDANLSNDEAAPRSPGMKYTHYAPTAPV 235

Query: 237 R--------LRAIHVNPREALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                    L  +    ++A +R G +   +N   A ++ +L     ++ AA  L++ ++
Sbjct: 236 FLVDGTREDLERVIEERKQAGLRIGALVFDENPTPAEVTYSLGT--SMEVAAQRLYDALR 293

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D++    I  ++I   G+ +A+ NRL +AA  +
Sbjct: 294 RFDETDVDEIYVNTIEPVGVALAVYNRLYKAAGGK 328


>gi|163853503|ref|YP_001641546.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium extorquens
           PA1]
 gi|254563432|ref|YP_003070527.1| hypothetical protein METDI5100 [Methylobacterium extorquens DM4]
 gi|163665108|gb|ABY32475.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium extorquens
           PA1]
 gi|254270710|emb|CAX26715.1| conserved hypothetical protein, Sua5/YciO/YrdC domain
           [Methylobacterium extorquens DM4]
          Length = 329

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 127/299 (42%), Positives = 170/299 (56%), Gaps = 3/299 (1%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A+PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+           D  +L LA
Sbjct: 33  VALPTETVYGLGADATDPEAVAAIYAAKGRPRFNPLIAHVATPEAALAEGVFDEAALRLA 92

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           K FWPGPLTLV+       +  L+ A L +   RVP     + L+E  G P+A PSANRS
Sbjct: 93  KEFWPGPLTLVVPAAPGGSVCDLARAGLDSVALRVPAHDIARGLLEQVGRPVAAPSANRS 152

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T+  H+L+  +   I  ++DGG   +G+EST+V        R+LRPGG+  E L 
Sbjct: 153 GRVSPTSADHVLTD-LDGRIAAVLDGGECPVGVESTVVACLG-GPPRLLRPGGVTREALA 210

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
             +    E   D  S P  PG+L SHYAPR+ VRL A  + P EA++ FG      ++ A
Sbjct: 211 AVLGFAPEAAGDPGSRPVGPGLLASHYAPRAGVRLEARTIEPSEAVLLFGAFRPAGLDRA 270

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
               +LS+ G   EAA  LF  ++  D SGA +IA   +P  GLG AIN+RL RAAAPR
Sbjct: 271 AAVESLSERGDPAEAAARLFGALRRLDASGAPTIAVVPVPEEGLGEAINDRLRRAAAPR 329


>gi|323137611|ref|ZP_08072688.1| Sua5/YciO/YrdC/YwlC family protein [Methylocystis sp. ATCC 49242]
 gi|322397237|gb|EFX99761.1| Sua5/YciO/YrdC/YwlC family protein [Methylocystis sp. ATCC 49242]
          Length = 321

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 122/305 (40%), Positives = 173/305 (56%), Gaps = 5/305 (1%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A PTETVYGL  D+ N  A+ R+Y+ K RP+ NPLI H++DI   ++ A +  
Sbjct: 19  LREGGLVAFPTETVYGLGADATNAWAVARIYDAKGRPSFNPLIAHIADIESARREALLPE 78

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +L LA+ FWPGPLT+V  +     +  L+ A L +   R+P     + LI   G P+A 
Sbjct: 79  AALRLAEAFWPGPLTIVAPVAPGGSVCELARAGLPSVALRIPDHPVAQALIAALGRPIAA 138

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG +S     H+ +  +   + +I+DGG +  GLESTIV+  CE    +LRPG +
Sbjct: 139 PSANRSGHVSPVTAAHV-AEDLSGRVEMILDGGRTTAGLESTIVSF-CEATPILLRPGAI 196

Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257
             E +++ +  +L       +   +PGM  SHYAP +++RL A  + P E  + FG    
Sbjct: 197 SREAIEKVLGEKL--AAPARAEVLAPGMTASHYAPDARLRLEAHELEPGEGALDFGGRLT 254

Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                    L+LS  G L EAA NLF Y++  D  G  S+A + IP  GLG AIN+RL R
Sbjct: 255 ALAPPGATVLDLSPVGDLVEAAANLFAYLREFDARGVRSVAVAHIPERGLGEAINDRLRR 314

Query: 318 AAAPR 322
           A+APR
Sbjct: 315 ASAPR 319


>gi|241895236|ref|ZP_04782532.1| SUA5 family translation factor [Weissella paramesenteroides ATCC
           33313]
 gi|241871542|gb|EER75293.1| SUA5 family translation factor [Weissella paramesenteroides ATCC
           33313]
          Length = 342

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 105/343 (30%), Positives = 163/343 (47%), Gaps = 18/343 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I   + +  A   +  G  +A PTETVYGL  D+ N  A+ ++Y  K RP+ NPL
Sbjct: 1   MTETKIWTVDEMDAAARAIKRGSLVAFPTETVYGLGADAYNEKAVGKVYAAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+D   V   A V+  +  L   +WPGPLT++L +     +    T  L T   R+P
Sbjct: 61  IVHVADPEQVADFAIVNERAQKLMAAYWPGPLTMILPVKPDV-LSMTVTGGLDTVAVRLP 119

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LI   G PL  PSAN SG+ S T  KH+    +  +I  I+D G +KIG+EST
Sbjct: 120 DNAATRQLIRESGKPLVGPSANTSGKPSPTLAKHVY-HDLHGKIAGILDDGPTKIGVEST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQV 236
           ++++  +    +LRPG +    ++  I V ++   + V +  TP++PGM   HYAP   V
Sbjct: 179 VLDLSTDMPA-VLRPGKITPAQIESVIGVPVDSEIHRVADNETPKAPGMKYRHYAPDKAV 237

Query: 237 RLRAIHVN----------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
            + A                   +   N  IK  + A +    S       AA  LF  +
Sbjct: 238 YMVAPEDWTQAIIWMQSQVEPVGLMLTNDLIKKHQLAGMDFIWSLGDNNDTAAAKLFAGL 297

Query: 287 KIADD-SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQRI 328
           +  DD     +I  +++P   +  A NNRL +A+     ++ +
Sbjct: 298 RYFDDKKDVQTILVAAMPQVDVNGAYNNRLGKASGGHWITELL 340


>gi|158321595|ref|YP_001514102.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus oremlandii OhILAs]
 gi|158141794|gb|ABW20106.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus oremlandii OhILAs]
          Length = 349

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 26/338 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   + +    L  G  +A PTETVYGL  ++ +  AI++++E K RP+ NPLI H++ 
Sbjct: 10  IDRRLIVECGSILRNGGVVAFPTETVYGLGANALDANAIKKIFEAKGRPSDNPLIVHIAK 69

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
              V      +  +   L + FWPGPLTL+ +   +  I    TA L T   R+P     
Sbjct: 70  KEDVIPLVKNIPEIGRILMEKFWPGPLTLLFE--KSDIIPNEVTAGLSTVGIRMPSHPIA 127

Query: 126 -KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LIE    P+A PSAN SG+ S T  +H++   +   +  II GG   +GLEST++++ 
Sbjct: 128 GALIEAAQVPVAAPSANTSGRPSPTKGQHVIEDMMG-RVDAIISGGECNVGLESTVLDIT 186

Query: 185 CEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQV--- 236
            +  + ILRPGG+  E L+  +        +E        P+SPGM  +HYAP++ V   
Sbjct: 187 GDIPM-ILRPGGVTKEMLEAVLGQVAVDAAIEDPSKSVEKPKSPGMKYTHYAPKADVIVV 245

Query: 237 ---------RLRAIHVNPREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                    +++ +    R    R G +     K++    +  ++      +  A  +F 
Sbjct: 246 EGPVEQMVMKIKVLEREYRAKGKRVGIICTEETKDLYGEAMVKSMGSRQVPETIAACIFK 305

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            ++  D++    I   ++    +G AI NRL++AA  R
Sbjct: 306 VLREFDETDVDIILSEAVEAVEIGQAIMNRLKKAAGYR 343


>gi|238853676|ref|ZP_04644044.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4]
 gi|238833714|gb|EEQ25983.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri 202-4]
          Length = 330

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 158/331 (47%), Gaps = 15/331 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     + +A E L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFSKKQIPEAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++ +   V   +  L K FWPGPLT++L +   T +    T  L TA FR 
Sbjct: 60  IVTVSDEKMMENYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN S + S T   H+    +  +I  IID G ++IGLES
Sbjct: 119 PDDELTHDLISELGKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++  E    +LRPG +  E + + +  E+   +        P++PGM   HYAP + 
Sbjct: 178 TIVDLSVETP-TVLRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAP 236

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL----KEAAFNLFNYMKIAD- 290
           V +          +       +  ++  +  +N S    L     +AA NLF  ++  D 
Sbjct: 237 VFI-VDKEEDFSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDS 295

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++    I      +  +  A  NRL +AAA 
Sbjct: 296 ENNIKRIYVQGFDHGTISPAYMNRLNKAAAG 326


>gi|325911759|ref|ZP_08174166.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D]
 gi|325476525|gb|EGC79684.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 143-D]
          Length = 331

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 107/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L +   T +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLTRPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLDKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   +   S    + EAA NLF  ++  D +    
Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADRFSLGVSIDEAAHNLFGALRYFDSNEQIK 300

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326


>gi|295094170|emb|CBK83261.1| Sua5/YciO/YrdC/YwlC family protein [Coprococcus sp. ART55/1]
          Length = 350

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 108/344 (31%), Positives = 165/344 (47%), Gaps = 28/344 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D     +A E L  G  +A PTETVYGL  D+ NP A  R+Y  K RP+ NPLI H++
Sbjct: 10  VDDDRMYEQAAEILKRGGLVAFPTETVYGLGGDALNPDASHRIYAAKGRPSDNPLIVHIA 69

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           + S V + A  V   +  L + FWPGPLT++L+      +   +T  L T   R+P    
Sbjct: 70  ETSSVYELAETVSDDTKKLMEAFWPGPLTIILN--KKEVVPHTTTGGLDTVAIRMPSHPV 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +LI+  G  +A PSAN SG+ S T  +H+    +   I +IIDGG   IG+ESTIV++
Sbjct: 128 AMRLIKDSGVYIAAPSANLSGRPSPTTAQHV-QQDMDGRIDMIIDGGAVGIGIESTIVDM 186

Query: 184 QCEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLR 239
             ++   ILRPG +  E ++  +  V ++  +   +    P++PGM  +HYAP+ ++ + 
Sbjct: 187 TGDRP-TILRPGYITPEMIRDIVGDVTIDPAITGMNNALRPKAPGMKYTHYAPKGELSIV 245

Query: 240 AIHVNPREALIR--FGNVPIKNIENAII----------------SLNLSKTGKLKEAAFN 281
                     IR        +  + AI+                  +          +  
Sbjct: 246 EGDRLAAAEKIRSLVAEKKAQGYKTAILCDTDNVSLYDDGVCENVYDAGSKKNEITVSAG 305

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           L++ ++  DD GA  I   S     +G AI NRL +AA  R  S
Sbjct: 306 LYSLLRTCDDIGAQYIYSESFEEGDMGYAIMNRLIKAAGHRIIS 349


>gi|92119409|ref|YP_579138.1| hypothetical protein Nham_4009 [Nitrobacter hamburgensis X14]
 gi|91802303|gb|ABE64678.1| translation factor SUA5 [Nitrobacter hamburgensis X14]
          Length = 328

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 137/309 (44%), Positives = 180/309 (58%), Gaps = 6/309 (1%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  +A PTETVYGL  D+ N  A+ RLY  K RPA NPLI HV D++  ++ A
Sbjct: 20  AVRTLRDGGLVAFPTETVYGLGADAANAEAVARLYRAKGRPAFNPLIAHVGDLAAAQRIA 79

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             D  +L LA  FWPGPLTLVL       +  L+TA L T   RVP     + ++  +G 
Sbjct: 80  RFDATALALASAFWPGPLTLVLPKAPRCPVADLATAGLDTIALRVPAHPVARDILRGFGG 139

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +  PSAN SG +S T   H+  S +   I LI+DGG  ++G+ESTIV     +   +LR
Sbjct: 140 AVVAPSANLSGHVSPTTAAHV-QSDLAGRIDLIVDGGPVEVGVESTIVGCF--ESPTLLR 196

Query: 194 PGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           PGG+    ++R +   L   Y       P + GML SHYAPR++VRL A  +   EAL+ 
Sbjct: 197 PGGIPRADIERVLGSALAPHYPGAADGQPLASGMLASHYAPRARVRLNAASLTRGEALLA 256

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAI 311
           FG V +  I+ A   +NLS+ G LKEAA NLF Y++  D SGA +IA   +P+ GLG AI
Sbjct: 257 FGPVDLAGIDTAAAVMNLSERGDLKEAAANLFGYLRALDASGARTIAVMPVPDDGLGEAI 316

Query: 312 NNRLERAAA 320
           N+RL RAAA
Sbjct: 317 NDRLRRAAA 325


>gi|332980647|ref|YP_004462088.1| translation factor SUA5 [Mahella australiensis 50-1 BON]
 gi|332698325|gb|AEE95266.1| translation factor SUA5 [Mahella australiensis 50-1 BON]
          Length = 350

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 107/337 (31%), Positives = 176/337 (52%), Gaps = 28/337 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + +A+RKA   +  G  +A PTETVYGL  ++ + +A+ R++E K RP+ NPLI H+ D
Sbjct: 13  INEDAIRKAAILIRKGEVVAFPTETVYGLGANALDASAVHRIFEAKGRPSDNPLIVHICD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           ISM+++    V   +L L + FWPGPLT+++       I    TA L T   R+P     
Sbjct: 73  ISMLEEVVEHVPSKALLLMERFWPGPLTIIMKKHKK--IPYEVTAGLDTVGVRMPDHPIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI + G P+A PSAN SG+ S T  +H++ + +   I  II GG  K+G+EST++++ 
Sbjct: 131 LALIRSAGVPIAAPSANISGRPSPTKPEHVI-ADMQGRIAAIIAGGTCKVGVESTVLDLS 189

Query: 185 CEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
               V + RPGG+ +E L+  I         L+    E + P SPGM   HY+P+++V +
Sbjct: 190 GNNPV-LYRPGGITLEMLEEVIGKVDTASGILKPVFAEGAVP-SPGMKYKHYSPKAKVII 247

Query: 239 RAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
               ++   A I+                     K + +  + + +    K +  A  LF
Sbjct: 248 VDGPIDRVIARIKKEADAYRQKGYNVGIMATEQTKAMYSEYMVIAVGDREKPETIAAALF 307

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           + +++ D + A  +   ++  +G+G+AI NR+ RAA 
Sbjct: 308 DTLRLFDKAKADVVLAEAVDANGVGLAIMNRMVRAAG 344


>gi|283796629|ref|ZP_06345782.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1]
 gi|291076052|gb|EFE13416.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. M62/1]
          Length = 377

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 107/324 (33%), Positives = 161/324 (49%), Gaps = 26/324 (8%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDP 78
             G  +A PTETVYGL  ++ + TA RR+YE K RP+ NPLI H++D   +    A +  
Sbjct: 53  REGGLVAFPTETVYGLGANALDETAARRIYEAKGRPSDNPLIAHIADFEALAPLTAEIPE 112

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
               LA+ FWPGPLT+V     +  +   +T  L+T   R+P     ++LI   G P+A 
Sbjct: 113 AGRKLAEAFWPGPLTMVF--KKSGVVPHGTTGGLETVAVRMPSDPVARELIRLAGVPIAA 170

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSAN SG+ S T  +H+L   +  +I +I+DGG   IG+ESTIV+V  E+   +LRPG +
Sbjct: 171 PSANTSGRPSPTRAEHVL-QDMDGKIEMIVDGGPVGIGVESTIVDVT-EEIPTLLRPGAV 228

Query: 198 EIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQV------------RLRA 240
            +E L+  +        +   +     P++PGM   HYAP++ +            R+ A
Sbjct: 229 TMEMLRSVVGETAVDPAITGPMRADIKPKAPGMKYRHYAPKADLTLVEGETDAVVSRINA 288

Query: 241 IHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           +      A  R G +  +  ++   A I  ++         A NL+  ++  DD     I
Sbjct: 289 LAAEKLGAGQRVGIICTEETKDRYPAGILKSIGMRANEATVAHNLYAVLREFDDLEVDCI 348

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
              S     LG AI NRL +AA  
Sbjct: 349 FSESFQADDLGQAIMNRLNKAAGY 372


>gi|225175847|ref|ZP_03729840.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT
           1]
 gi|225168771|gb|EEG77572.1| Sua5/YciO/YrdC/YwlC family protein [Dethiobacter alkaliphilus AHT
           1]
          Length = 355

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/334 (30%), Positives = 165/334 (49%), Gaps = 24/334 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L  G  +A PTETVYGL  ++ N  A+ +++  K RP+ NPLI HV    
Sbjct: 21  QEQIAQAGRILAGGGLVAFPTETVYGLGANALNGPAVEKIFNAKGRPSDNPLIVHVDRAD 80

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +++ A  + P +  LAK FWPGPLTLVL       +    +  LKT   R+P       
Sbjct: 81  KIRELAQNIPPEAWCLAKHFWPGPLTLVLPKQEI--VPREVSGGLKTVAVRIPDHPVALA 138

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++T G P+A PSAN SG+ S T   H+L   +   I  ++DGG   +G+EST+++++  
Sbjct: 139 LLKTAGVPVAAPSANLSGRPSPTTAGHVL-DDLDGRIDAVVDGGPCGVGVESTVLSIENG 197

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVRL----- 238
           + V +LRPGG+  E + + +                P SPG+  +HYAP++ + L     
Sbjct: 198 QPV-VLRPGGVTPEQITQVLGKVCAVAAWQEQSGDAPPSPGLKYTHYAPQAPMYLLLGKP 256

Query: 239 -------RAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLKEAAFNLFNYMKI 288
                  +A+         + G +  + + N   A     L +  +  E A NL++ ++ 
Sbjct: 257 EAVAEKMQAMRDEFWAQSQKVGLLLSRELSNRVTADAVEVLGERDRPVELAANLYSALRR 316

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            D++    I      + G+G A+ NR+ +AA PR
Sbjct: 317 LDETDCDVILAEGYNDEGMGFALMNRMAKAAGPR 350


>gi|116629881|ref|YP_815053.1| putative translation factor (SUA5) [Lactobacillus gasseri ATCC
           33323]
 gi|311110483|ref|ZP_07711880.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22]
 gi|116095463|gb|ABJ60615.1| translation factor SUA5 [Lactobacillus gasseri ATCC 33323]
 gi|311065637|gb|EFQ45977.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus gasseri MV-22]
          Length = 334

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 158/331 (47%), Gaps = 15/331 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     + +A E L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPL
Sbjct: 5   MET-KIFSKKQIPEAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPL 63

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++ +   V   +  L K FWPGPLT++L +   T +    T  L TA FR 
Sbjct: 64  IVTVSDEKMMENYVNEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 122

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN S + S T   H+    +  +I  IID G ++IGLES
Sbjct: 123 PDDELTHDLISELGKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLES 181

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++  E    +LRPG +  E + + +  E+   +        P++PGM   HYAP + 
Sbjct: 182 TIVDLSVETP-TVLRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAP 240

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL----KEAAFNLFNYMKIAD- 290
           V +          +       +  ++  +  +N S    L     +AA NLF  ++  D 
Sbjct: 241 VFI-VDKEEDFSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDS 299

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++    I      +  +  A  NRL +AAA 
Sbjct: 300 ENNIKRIYVQGFDHGTISPAYMNRLNKAAAG 330


>gi|146296540|ref|YP_001180311.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410116|gb|ABP67120.1| translation factor SUA5 [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 348

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 109/336 (32%), Positives = 161/336 (47%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D N L KA + L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S 
Sbjct: 11  IDYNKLSKAAQILKEGGLVAFPTETVYGLGANALLKEAVDKIFVAKGRPQDNPLIVHISS 70

Query: 67  ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M+   A V D     L + FWPGPLT+VL       I    TA L T   R+P     
Sbjct: 71  KKMLDMCAKVTDERVYKLIEKFWPGPLTIVLPKKEC--IPDNVTAGLNTVGIRMPNNKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LIE  G P+A PSAN SG+ S T  +H++   +  ++ +IIDGG    GLEST++++ 
Sbjct: 129 LELIELAGVPVAAPSANVSGKPSPTEAQHVI-EDLFGKVDVIIDGGKCSFGLESTVIDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDET---STPQSPGMLKSHYAPRSQVRLRA 240
             K   ILRPG +    LK  +  +E +  +      S P++PGM   HYAP +++ +  
Sbjct: 188 SSKPY-ILRPGAVPFSILKEILEDIEYDPSILAGNILSVPKAPGMKYKHYAPDAKMIVVK 246

Query: 241 IHVNPREALIRF--GNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNY 285
             ++ R   I     ++ IK  +  I+                L      KE   NLF+ 
Sbjct: 247 GKIHKRIDKINEIKKDLEIKGYKVGILCFYETSHNFESQYKIVLGSMFDYKECGKNLFSA 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  +  G   I           +A+ NRL +A+A 
Sbjct: 307 LRRFNHLGVDYIICEWGEFGIEYLALENRLFKASAN 342


>gi|297564656|ref|YP_003683628.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus silvanus DSM 9946]
 gi|296849105|gb|ADH62120.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus silvanus DSM 9946]
          Length = 327

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 113/321 (35%), Positives = 175/321 (54%), Gaps = 10/321 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++  T    + +A   +  G  +A PTETVYGL  ++ + +A+ R++E K+RP+++PL
Sbjct: 10  MAVVPTT-PREIEQAARVIREGGLVAFPTETVYGLGANALDASAVARIFEAKRRPSLDPL 68

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+D +M+ + A  V P    L + FWPGPLTLVL       +  + T+ L T   R+
Sbjct: 69  IVHVADRAMLLRVAREVPPQVEPLMEKFWPGPLTLVLPKAEA--VPGIVTSGLPTVAVRM 126

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +LI   G P+A PSAN  G +S T  +H+    + + + LI+DGG +  G+ES
Sbjct: 127 PAHPVALELIRQAGLPIAAPSANPFGYLSPTRAEHV-ERMLGEAVDLILDGGPTLYGVES 185

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TI  +   +K  +LR G + +E L+  +   +E  V E+  P  PG L  HYAPR+ +++
Sbjct: 186 TI--LLLAEKPVVLRHGAIPLEELESILG-RVELRVGESVRPLVPGQLPQHYAPRTPIQV 242

Query: 239 RAIHVNPREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
                 P+E   + G +  +++     I   LS TG L+EAA +LF  +   D  G  +I
Sbjct: 243 ARPDEVPKELRKQSGYLAFRDVPKGFKIVKVLSPTGDLREAAAHLFEALHQLDRLGLPAI 302

Query: 298 AFSSIPNHGLGIAINNRLERA 318
               +P  GLG AI +RL RA
Sbjct: 303 YAEPVPEEGLGRAIMDRLRRA 323


>gi|325568365|ref|ZP_08144732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325158134|gb|EGC70287.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 342

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I D + L +A   L  G  +A PTETVYGL   +  P A+ ++Y++K RP+ NPL
Sbjct: 1   MET-KIFDQSQLNEAAAILAEGGLVAFPTETVYGLGASALLPNAVAQVYQVKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+++   ++       P +  L + FWPGPLTL+  +   + +  + T  L TA FR+
Sbjct: 60  IVHIAEPEQLEPFVDNKHPFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI+    PL  PSAN SG+ S T+  H+    +  +I  I+D G+++IG+ES
Sbjct: 119 PNNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVES 177

Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E L+  +  ++   ++ V E+  P++PGM   HYAP +
Sbjct: 178 TVLDLSDPTAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNT 237

Query: 235 QVRLR------AIHVNPREALIRFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFN 284
            V +       A     +E  ++ G +    I   +     ++ L     ++ A   LF 
Sbjct: 238 NVMMINDQDWSAAMAWAKEQQLKVGVLAGPTIAEQVRFEAAAIYLFFDDSVEAATKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++  D+  +    +   + P  GLG A  NRL++AA
Sbjct: 298 GLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA 334


>gi|86748257|ref|YP_484753.1| Sua5/YciO/YrdC/YwlC [Rhodopseudomonas palustris HaA2]
 gi|86571285|gb|ABD05842.1| translation factor SUA5 [Rhodopseudomonas palustris HaA2]
          Length = 329

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 135/310 (43%), Positives = 176/310 (56%), Gaps = 7/310 (2%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  I  PTETVYGL  D+  P A+ RLY  K RP+ NPLI HV+++   +K A  D
Sbjct: 23  VLRGGGLIGFPTETVYGLGADAAAPAAVARLYAAKGRPSFNPLIAHVANLDAARKIARFD 82

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             +  LA  FWPGPLTLVL       +  L+TA L +   R+P     + ++  +G  + 
Sbjct: 83  SRASALAAAFWPGPLTLVLPKAEECTVCDLATAGLDSVAVRIPAHPVAQAILRAFGGAVV 142

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSANRSG +S T   H+  + +   I LI+DGG   +G+ESTIV+      +  LRPGG
Sbjct: 143 APSANRSGHVSPTTAAHV-RADLDGRIDLIVDGGAVDVGVESTIVSCLGAPAL--LRPGG 199

Query: 197 LEIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           +  E ++R +   L       +    P +PGML SHYAPR+QVRL A  V P EAL+ FG
Sbjct: 200 VPREAIERLLGCALADPSPAAAGEHAPLAPGMLASHYAPRAQVRLDAGEVRPGEALLAFG 259

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
              +   E A  + NLS    L EAA NLF +++  D  GA  IA   IP HGLG AIN+
Sbjct: 260 PAALPGAETACATRNLSPAADLTEAAANLFGFLRELDAGGARVIAVMPIPPHGLGEAIND 319

Query: 314 RLERAAAPRN 323
           RL RAAAPR+
Sbjct: 320 RLRRAAAPRD 329


>gi|296111567|ref|YP_003621949.1| SUA5 family translation factor (putative) [Leuconostoc kimchii
           IMSNU 11154]
 gi|295833099|gb|ADG40980.1| SUA5 family translation factor (putative) [Leuconostoc kimchii
           IMSNU 11154]
          Length = 337

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 117/330 (35%), Positives = 177/330 (53%), Gaps = 16/330 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD  AL KA   L AG  +A PTETVYGL  D+ N  A+++++  K RPA NPLI  V+D
Sbjct: 8   TDQQALAKASALLKAGEVVAFPTETVYGLGADATNDLAVKKVFTAKGRPADNPLIMTVAD 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +S ++ + ++   +  L   FWPG LT++L ++ T  +  L T  L+T  FR+P    T+
Sbjct: 68  VSQLEAYVTISEAAQKLMTQFWPGSLTIILPII-TGQVSMLVTGGLQTVAFRLPANDVTR 126

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G PL  PSAN SG+ S T  +H+    +  +I  I+D G + +G+EST+V++  
Sbjct: 127 ELIRMTGVPLVGPSANLSGKPSPTTAQHVW-HDMQGKISGIVDDGPTMVGVESTVVDMSA 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL-- 238
                ILRPG +    L+ A+ V +      TS     TP++PGM   HYAP  +V +  
Sbjct: 186 AVP-TILRPGAVTQNQLQEALGVAVIDATSTTSVASDVTPKAPGMKYRHYAPDKKVVMFD 244

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK----LKEAAFNLFNYMKIADDSG- 293
           R   ++ +  L +   V  ++   A + L LS+T      L+ A   LF  ++  DD   
Sbjct: 245 RLDALDLKLTLQKNDVVMAQDATIAGMQLPLSQTWSLGETLENATEQLFAGLRFYDDDDE 304

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            + I    +P  G+G A NNRL +AA  + 
Sbjct: 305 VAIIYVEKMPPVGIGKAFNNRLAKAAGNQE 334


>gi|325679591|ref|ZP_08159166.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 8]
 gi|324108621|gb|EGC02862.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 8]
          Length = 338

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 110/334 (32%), Positives = 176/334 (52%), Gaps = 26/334 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  N+++KA + +  G  + +PTETVYGLA ++ N  A+R+++  K RPA NPLI HVS 
Sbjct: 9   SSENSIKKASDLIRTGEVVGMPTETVYGLAANAFNENAVRKIFAAKGRPADNPLIVHVSS 68

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
              +    +  P L+   A+LFWPGPLT+++    +  I  +++  L T   R+P     
Sbjct: 69  FEEISPLVTEIPVLARKCAELFWPGPLTMIMP--KSDMIPMVTSGGLDTVGIRMPSNNTA 126

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +  I+    P+A PSAN SG  S T   H+L+  +   IP IIDGG   +G+EST+++ +
Sbjct: 127 RAFIKECSCPIAAPSANLSGSPSPTTASHVLND-MKGRIPAIIDGGACGVGVESTVISFE 185

Query: 185 CEKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
            +  +R+LRPG +  E L+       I   +   +DE +   SPGM   HYAP+++V + 
Sbjct: 186 GDG-IRLLRPGFVSAEDLREVTENVLIDKGVLEMLDENARVSSPGMKYKHYAPKAEVSIV 244

Query: 240 AI-----------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                        + +  + L+ F       +EN ++ L  S     +E A  LF+ ++ 
Sbjct: 245 CGNSGEFNGFCMKNASADDVLMVFDESDAAGLENRLLVLGKSD----EEQAQRLFDALRE 300

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            D+ GA  +        G+G+A+ NRL RAAA R
Sbjct: 301 LDEMGAKKVYARCPNKTGVGLAVYNRLLRAAAFR 334


>gi|260584607|ref|ZP_05852353.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella elegans ATCC
           700633]
 gi|260157630|gb|EEW92700.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella elegans ATCC
           700633]
          Length = 341

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/338 (34%), Positives = 172/338 (50%), Gaps = 21/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     L +A   L  G  +A PTETVYGL   + +  A+ +++E K RP+ NPL
Sbjct: 1   MKT-QIFHQETLDQAATLLKQGEVVAFPTETVYGLGAIATSQEAVLKVFEAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  V       P S   LAK FWPGPLT++L         P  +A L T  FR+
Sbjct: 60  IVHVHSVDHVMDTVEEFPESAKLLAKHFWPGPLTMILKAKPGI-YAPALSAGLPTVSFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LIE  G PL  PSAN+S + S T V+H++   +   I  I+DGG + +G+ES
Sbjct: 119 PNHELTLSLIEQVGIPLVGPSANQSTKPSPTRVEHVV-EDMDGRIAGIVDGGDTSVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQ 235
           T++++  E+   ILRPG +  E ++  I   +EY      E  TP+SPGM   HYAP + 
Sbjct: 178 TVIDLTNEEGPVILRPGVITKEEIEPIIGPLVEYMKTTTGEKVTPKSPGMKYRHYAPTTP 237

Query: 236 VRLRAIHVNPREALI--------RFGNVPIKNIENAI-----ISLNLSKTGKLKEAAFNL 282
           V +    V    +LI        +   +   NI + +      S +L +   + + + +L
Sbjct: 238 VVVVEGSVEFWHSLIEEYQEQGEKVAVMATDNILDEVRLNVSESYSLGEKDSVADMSHHL 297

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           FN ++  D + A+ I   +    G G+A  NRLE+A++
Sbjct: 298 FNALRSLDHTDATIILAQASVKEGSGLAYMNRLEKASS 335


>gi|296242927|ref|YP_003650414.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486]
 gi|296095511|gb|ADG91462.1| translation factor SUA5 [Thermosphaera aggregans DSM 11486]
          Length = 356

 Score =  330 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/342 (29%), Positives = 164/342 (47%), Gaps = 32/342 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            ++ A   L  G  +A PTETVYGL     +  A+ R++++K RP+ NPLI HVS + MV
Sbjct: 16  EIQYAAGVLRRGGLVAFPTETVYGLGALVWDERAVTRIFQVKGRPSDNPLIVHVSSVEMV 75

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +K AS +   +  L +  WPGPLT+VL    +  +    TA L T   R+P       LI
Sbjct: 76  EKVASRIPEDAYRLMEKAWPGPLTIVLPR--SERVPRTVTAGLDTVAVRMPSHPVALSLI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+A PSAN SG+ S T   H++   +   + +I+D G +  G+EST+VN+  E  
Sbjct: 134 RETGEPVAAPSANLSGRPSPTTGYHVIRD-LMGRVEVILDAGATLQGVESTVVNILTE-P 191

Query: 189 VRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240
             +LRPG + +E ++R +   +        ++    P +PGM   HYAP +++ L     
Sbjct: 192 PTLLRPGAMPVEDVERILGRRILIPGFAKGLEHAEKPLAPGMKYRHYAPSAKLVLVEAPL 251

Query: 241 ------------------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
                             ++ + +  ++           + + +L+L     L E A NL
Sbjct: 252 YTLECLKELAGYIRRQASLNSDGKLCVVATDETLQYYSGSGLKTLSLGSRRDLFEIARNL 311

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           F  ++  D+           P  GLG+ I NRL +AA+ ++ 
Sbjct: 312 FPTLRKVDEEDCRIAYVEGFPEQGLGLTIMNRLRKAASEKHY 353


>gi|258541814|ref|YP_003187247.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256632892|dbj|BAH98867.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256635949|dbj|BAI01918.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639004|dbj|BAI04966.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642058|dbj|BAI08013.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645113|dbj|BAI11061.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648168|dbj|BAI14109.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651221|dbj|BAI17155.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654212|dbj|BAI20139.1| translation modulator Sua5/YciO/YrdC/YwlC [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 333

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 123/313 (39%), Positives = 171/313 (54%), Gaps = 9/313 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ L+ A   L  G  +A  TETVYGL  D+  P  + R++E K RP  NPLI H +D  
Sbjct: 9   SSGLQTAARILREGGLVAFGTETVYGLGGDATQPKTVARIFEAKNRPRFNPLISHFADAQ 68

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
                   +PL+  LA  FWPGPLTL+L     + +  L+   L T   RVP G   + L
Sbjct: 69  AAFTQVVANPLAHKLADTFWPGPLTLILPRAPHSTVSDLAADGLPTLAVRVPKGETVQAL 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++    P+A PSANRSG+IS ++  H+L   +   I  ++D G  ++G+EST++++   +
Sbjct: 129 LKLVQRPIAAPSANRSGRISPSDAAHVL-EELDGRIDAVLDSGPCQVGVESTVLDISNPE 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           +  +LRPGG+ +E L+           +  + P SPG L SHYAP   VRL A  V P E
Sbjct: 188 RPTLLRPGGITLEALQAVCGTIFMPETEVDAAPASPGRLLSHYAPHLPVRLNATDVAPDE 247

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG----ASSIAFSSIP 303
           AL+ FGN        A IS NLS++G L+EAA  LF  ++  D  G       IA   IP
Sbjct: 248 ALLAFGNT---QPSEAAISWNLSESGNLEEAAARLFTGLRTLDKQGQSHHLRGIAVQPIP 304

Query: 304 NHGLGIAINNRLE 316
            HGLG+AI +RL 
Sbjct: 305 QHGLGLAIQDRLN 317


>gi|58337082|ref|YP_193667.1| Sua5 family translation factor [Lactobacillus acidophilus NCFM]
 gi|227903650|ref|ZP_04021455.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidophilus ATCC
           4796]
 gi|58254399|gb|AAV42636.1| putative translation factor SUA5 family [Lactobacillus acidophilus
           NCFM]
 gi|227868537|gb|EEJ75958.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus acidophilus ATCC
           4796]
          Length = 334

 Score =  330 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 108/330 (32%), Positives = 162/330 (49%), Gaps = 18/330 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I   + L  A E L  G  +A PTETVYGL   +    ++R +Y  K RP+ NPLI  V
Sbjct: 5   KIFKKDQLDDAVELLAKGELVAFPTETVYGLGAIATKEDSVRGVYAAKGRPSDNPLIVTV 64

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           SD  M++++A  V   +  L K FWPGPLT++L +   T +    T  LKT  FR P   
Sbjct: 65  SDEKMMERYAKEVPERAKKLIKHFWPGPLTILLFVKPNT-LPDAVTGGLKTVAFRCPDDS 123

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLESTI++
Sbjct: 124 LTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLESTIID 182

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +  E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   V + 
Sbjct: 183 LSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDVPKAPGMKYRHYAPSEPVIV- 240

Query: 240 AIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKIADDS 292
            +      + I F     +  +E+ + +++L           L +A  NLF  ++  DD 
Sbjct: 241 -VDDPADFSKINFNEKTGVAALESVLANIDLPDENKFNLGNDLVDADHNLFGSLRYFDDK 299

Query: 293 -GASSIAFSSIPNHGLGIAINNRLERAAAP 321
               +I           +A  NRL +AA  
Sbjct: 300 DNVETIYVQGFDEGEESLAYMNRLNKAAGG 329


>gi|312871613|ref|ZP_07731705.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           3008A-a]
 gi|311092838|gb|EFQ51190.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           3008A-a]
          Length = 338

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 107/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 12  IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 71

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L +   T +    T  L TA FR P    
Sbjct: 72  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLILFVKEGT-LPDAVTGGLPTAAFRCPQDPL 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 131 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 190 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 248

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   +   S    + EAA NLF  ++  D +    
Sbjct: 249 DPADFAYIPHDSSVGVAALA-DNLHDLGDADRFSLGVSIDEAAHNLFGALRYFDSNEQIK 307

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 308 TIYVQGFAKGNISAAYMNRLNKAASG 333


>gi|116493076|ref|YP_804811.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745]
 gi|116103226|gb|ABJ68369.1| translation factor SUA5 [Pediococcus pentosaceus ATCC 25745]
          Length = 340

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 107/336 (31%), Positives = 166/336 (49%), Gaps = 20/336 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  +  S+ ++ A + + AG  ++ PTETVYGL  D+ NP A++++Y  K RP+ NPLI 
Sbjct: 1   MSKLFSSDEIQVAAQAIKAGELVSFPTETVYGLGADATNPEAVKKVYAAKGRPSDNPLIV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           HV+D + V K A++D  S  L   FWPGPLT++L +     ++ + T  L TA FR P  
Sbjct: 61  HVADQTEVAKFANIDDKSKKLMDQFWPGPLTIILPIKKGA-LNSIVTGGLDTAAFRNPAT 119

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  LI   G PL  PSAN SG+ S T  +H+L   +  +I  ++D G + IG+EST++
Sbjct: 120 QVTIDLIRAAGVPLVGPSANTSGKPSPTKPEHVL-HDLDGKIAGVLDDGETTIGVESTVL 178

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           ++       ILRPG +  + L   I       + V +   P++PGM   HYAP +QV + 
Sbjct: 179 DMSSTTP-SILRPGAITEQALAPLIGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIV 237

Query: 240 AIHVNPREALIRFGNV-------------PIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
           +             +                K +        +S     K A+  LF+ +
Sbjct: 238 SDQDWDGVVAWLQKHTDQTIGIMATNEIFETKKLGEFDQVRYISLGVDSKTASRELFDGL 297

Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  D DS   +I        G+G A  NRL+++A  
Sbjct: 298 RTFDADSAIKTIFAQGFDRIGIGEAYMNRLQKSAGN 333


>gi|282881792|ref|ZP_06290449.1| protein Sua5 [Peptoniphilus lacrimalis 315-B]
 gi|281298365|gb|EFA90804.1| protein Sua5 [Peptoniphilus lacrimalis 315-B]
          Length = 350

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 23/334 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+K  E    G  +  PTETVYGL  +  +  A++++YE K RP  NP I H++  
Sbjct: 16  DKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAKGRPNDNPSILHIAKT 75

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S + +  S  P ++      FWPGPLT++     +  +    T  L T   R+P      
Sbjct: 76  SQLDELVSEIPKIAKKCINNFWPGPLTIIF--KKSDIVPMEVTGGLDTVAIRMPSNKIAA 133

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+++    P+A PSAN SG+ S T   H++   +   + +I+DGG S +G+EST+++V  
Sbjct: 134 KILKNVNLPIAAPSANISGRPSPTKASHVI-EDLMGRVDIIVDGGKSIVGIESTVLDVTT 192

Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +  + ILRPG + +E L++    I ++       + S P+SPG    HYAP+        
Sbjct: 193 DPPM-ILRPGKVTLEDLQKIDKSIGIDNTTIDAKDKSIPKSPGQKYKHYAPKGMATCFVG 251

Query: 242 HVN-------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
            ++               +  +   +  +     A + LNL     L+E A +LF+ ++ 
Sbjct: 252 EMDGIVNEINKRIKNSKGKVAVLATSQNLDKYVGADLILNLGDRDNLEEVANSLFDLLRK 311

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            D+     I        G+G++I NRL +A A R
Sbjct: 312 CDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGR 345


>gi|309803187|ref|ZP_07697284.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           11V1-d]
 gi|309805675|ref|ZP_07699716.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           09V1-c]
 gi|309806328|ref|ZP_07700341.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           03V1-b]
 gi|309809899|ref|ZP_07703747.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|308164695|gb|EFO66945.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           11V1-d]
 gi|308165035|gb|EFO67277.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308167312|gb|EFO69478.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308169687|gb|EFO71732.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN
           2503V10-D]
          Length = 331

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   + + S    + EAA NLF  ++  D +    
Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326


>gi|42518857|ref|NP_964787.1| hypothetical protein LJ0932 [Lactobacillus johnsonii NCC 533]
 gi|41583143|gb|AAS08753.1| hypothetical protein LJ_0932 [Lactobacillus johnsonii NCC 533]
          Length = 330

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 110/330 (33%), Positives = 159/330 (48%), Gaps = 13/330 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I +   + +A   L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFNKEQIPEAVALLRKGELVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++ +   V   +  L K FWPGPLT++L +   T +    T  L TA FR 
Sbjct: 60  IVTVSDEQMMENYVSEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 118

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLES
Sbjct: 119 PNDDMTHDLISGLGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++  EK   +LRPG +  E +   +  E+            P++PGM   HYAP + 
Sbjct: 178 TIVDLSVEKP-TVLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAP 236

Query: 236 VRLRAIHVN--PREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIAD-D 291
           V +     +    +     G   +  +   I S N    GK + +AA NLF  ++  D +
Sbjct: 237 VLIVDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDGE 296

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                I      +  +  A  NRL +AAA 
Sbjct: 297 DKIKRIYVQGFDHGAISAAYMNRLNKAAAG 326


>gi|300813902|ref|ZP_07094206.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511965|gb|EFK39161.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 350

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 23/334 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+K  E    G  +  PTETVYGL  +  +  A++++YE K RP  NP I H++  
Sbjct: 16  DKKELKKITETFKEGGLVVFPTETVYGLGANGLDKEAVKKIYEAKGRPNDNPSILHIAKT 75

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S + +  S  P ++      FWPGPLT++     +  +    T  L T   R+P      
Sbjct: 76  SQLDELVSEIPKIAKKCINNFWPGPLTIIF--KKSDIVPMEVTGGLDTVAIRMPSNKIAA 133

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+++    P+A PSAN SG+ S T   H++   +   + +I+DGG S +G+EST+++V  
Sbjct: 134 KILKNVNLPIAAPSANISGRPSPTKASHVI-EDLMGRVDIIVDGGKSIVGIESTVLDVTT 192

Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +  + ILRPG + +E L++    I ++       + S P+SPG    HYAP+        
Sbjct: 193 DPPM-ILRPGKVTLEDLQKIDKSIGIDNTTIDAKDKSIPKSPGQKYKHYAPKGMATCFVG 251

Query: 242 HVN-------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
            ++                  +   +  +     A + LNL     L+E A +LF+ ++ 
Sbjct: 252 EMDGIVNEINKRIKNSKGRVAVLATSQNLDKYVGADLILNLGDRDNLEEVANSLFDLLRK 311

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            D+     I        G+G++I NRL +A A R
Sbjct: 312 CDEEKVDVIFAEGFELKGMGLSIMNRLLKACAGR 345


>gi|257867025|ref|ZP_05646678.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC30]
 gi|257873360|ref|ZP_05653013.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC10]
 gi|257801081|gb|EEV30011.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC30]
 gi|257807524|gb|EEV36346.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC10]
          Length = 342

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I D   L +A   L  G  +A PTETVYGL   +  PTA+ ++Y++K RP+ NPL
Sbjct: 1   MET-KIFDQTQLNEAAAILAEGGLVAFPTETVYGLGASALLPTAVAQVYQVKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+++   ++       P +  L + FWPGPLTL+  +   + +  + T  L TA FR+
Sbjct: 60  IVHIAEPEQLEPFVDNKHPFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI+    PL  PSAN SG+ S T+  H+    +  +I  I+D G+++IG+ES
Sbjct: 119 PNNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVES 177

Query: 179 TIVNVQCEK-KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E L+  +  ++   ++ V E+  P++PGM   HYAP +
Sbjct: 178 TVLDLSDPTAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNT 237

Query: 235 QVRLRAIHVNPREALIR----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
            V +      P                 G    + +     ++ L     ++ A   LF 
Sbjct: 238 NVLMVNDQDWPAAMAWAKEQQFKVGVLAGPTIAEQVRFEAAAIYLFFDDSVEAATKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++  D+  +    +   + P  GLG A  NRL++AA
Sbjct: 298 GLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA 334


>gi|326203240|ref|ZP_08193105.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM
           2782]
 gi|325986498|gb|EGD47329.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium papyrosolvens DSM
           2782]
          Length = 354

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 106/347 (30%), Positives = 175/347 (50%), Gaps = 31/347 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++ I   N    AL  A E L  G+ +A PTETVYGL  ++ +  A+ ++++ K RP+ 
Sbjct: 4   KVIKIDAENIDKIALEPAAEALKEGMTVAFPTETVYGLGANALDGAAVSKIFKAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++D   V +  S  P  ++ L    WPGPLTLV+    ++ I    TA L T  
Sbjct: 64  NPLIVHIADREKVSELTSFIPAKAVALMDKLWPGPLTLVM--KKSSAIPREITAGLDTVA 121

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P      +LI   G P+A PSAN SG+ S T  +H+L   +  +I +I+D G S +G
Sbjct: 122 IRMPGHPVALELIRLAGIPVAAPSANVSGKPSPTTARHVL-DDLEGKIEIIVDAGSSSVG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHY 230
           LEST+++V  +  V +LRPGG+    ++  I        +   V   + P+SPGM   HY
Sbjct: 181 LESTVLDVSVDPPV-LLRPGGITPRQIEEIIGQIDIDKTIMGKVTADNVPKSPGMKYKHY 239

Query: 231 APRSQVRLRAIHVNPRE--ALIRFGNVPIKNIENAIIS--------------LNLSKTGK 274
           +P++ V +   +   ++   + R     IK  +   +               +++     
Sbjct: 240 SPKAHVIIVESNDMDKQTEVVCRLAEKYIKEDKKVGVCSTDQTFDRYKLFETISMGDRNH 299

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  A +LF+ ++  DD     I   ++  +G+G+AI NR+ +AA  
Sbjct: 300 PETIASSLFSILREFDDREVDIILAEAVDQNGVGLAIMNRMVKAAGY 346


>gi|99078038|ref|YP_611296.1| translation factor SUA5 [Ruegeria sp. TM1040]
 gi|99035176|gb|ABF62034.1| Sua5/YciO/YrdC/YwlC [Ruegeria sp. TM1040]
          Length = 323

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 129/309 (41%), Positives = 173/309 (55%), Gaps = 13/309 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  +A PTETVYGL  D+ N  A+  +Y  K RP+ NPLI HV+D+   ++    
Sbjct: 27  ELLTAGQLVAFPTETVYGLGADATNGAAVAAIYATKGRPSFNPLIAHVADVRAARRLVQW 86

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPL 135
           +  +  +A  FWPGPLTLVL L    ++ PL TA L T   RVP     ++L+   G P+
Sbjct: 87  NDWAEAMATAFWPGPLTLVLPLRPDHNVSPLVTAGLDTLAVRVPAKACSRELLAAVGRPV 146

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN SG+IS T   H+  + +  +I  I+D G   +G+ESTI+ +     + +LRPG
Sbjct: 147 AAPSANPSGRISPTTADHV-RAGLGGKIAAILDDGPCGVGVESTILGLAGAAPI-LLRPG 204

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           GL  E ++ A+   L     E     +PG L SHYAP + VRL A   +P E  + FG  
Sbjct: 205 GLAAEDIEHALGCTLMTRA-EADPLTAPGQLMSHYAPNASVRLEAQDFSPDEVSLGFGP- 262

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
                      LNLS +G L EAA NLF ++   D  G   IA + +P  GLGIAIN+RL
Sbjct: 263 -------GDFDLNLSPSGDLNEAAANLFGHLHHLDALG-RPIAVAPVPERGLGIAINDRL 314

Query: 316 ERAAAPRNQ 324
            RAAAPR+ 
Sbjct: 315 RRAAAPRDS 323


>gi|270291031|ref|ZP_06197254.1| translation factor [Pediococcus acidilactici 7_4]
 gi|270280427|gb|EFA26262.1| translation factor [Pediococcus acidilactici 7_4]
          Length = 340

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 109/336 (32%), Positives = 170/336 (50%), Gaps = 20/336 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  I  S  L  A   +  G  +A PTETVYGL  D+ NP A++++Y+ K RP+ NPLI 
Sbjct: 1   MSEIFQSENLADAAAAIQRGDLVAFPTETVYGLGADATNPDAVKKVYQAKGRPSDNPLIV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           HV+  + V + A +D  S  L   FWPGPLT++L +     + P+ T  L TA FR P  
Sbjct: 61  HVTGPAQVAEFAEIDAQSKQLMDTFWPGPLTIILPIKLHA-LDPVVTGGLTTAAFRNPDT 119

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T KLIE  G PL  PSAN SG+ S T   H++   +  +I  ++DGG +KIG+EST++
Sbjct: 120 PLTLKLIEQAGVPLVGPSANTSGKPSPTKPAHVM-HDLDGKIAGVLDGGETKIGVESTVL 178

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           ++       +LRPG +  E L   +       + V +   P++PGM   HYAP +QV + 
Sbjct: 179 DMSGTVP-SVLRPGAVTPEDLTPILGEVQTDHHKVGKDEVPKAPGMKYKHYAPNAQVYIV 237

Query: 240 AIHVNPREA--LIRFGNVPIKNIENAIISLN-----------LSKTGKLKEAAFNLFNYM 286
                 + A  + +    P+  +  + I  +           +S     + A+ +LF+ +
Sbjct: 238 KDAQWSKVADWVAQHAQQPVGVLATSAIFDSTKLIDFDNVDFISLGEDARTASHHLFDGL 297

Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  D +     I   +    G+G A  NRL+++A  
Sbjct: 298 RTFDGNPQIKVIFAQAFDPTGIGAAYMNRLQKSAGN 333


>gi|329667596|gb|AEB93544.1| hypothetical protein LJP_1222c [Lactobacillus johnsonii DPC 6026]
          Length = 330

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 110/330 (33%), Positives = 159/330 (48%), Gaps = 13/330 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I +   + +A   L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFNKEQIPEAVALLRKGKLVAFPTETVYGLGALATNEKAVKSVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++ +   V   +  L K FWPGPLT++L +   T +    T  L TA FR 
Sbjct: 60  IVTVSDEQMMENYVSEVPERAKKLIKHFWPGPLTIILFVKEGT-LPDAVTGGLPTAAFRC 118

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN S + S T  +H+    +  +I  IID G ++IGLES
Sbjct: 119 PNDDMTHDLISGLGKPIVGPSANTSTKPSPTTAEHVF-HDLKGKIAGIIDNGPTEIGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++  EK   +LRPG +  E +   +  E+            P++PGM   HYAP + 
Sbjct: 178 TIVDLSVEKP-TVLRPGEITPEEISAVLGEEVLMNRGTTQTKGVPKAPGMKYRHYAPSAP 236

Query: 236 VRLRAIHVN--PREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIAD-D 291
           V +     +    +     G   +  +   I S N    GK + +AA NLF  ++  D +
Sbjct: 237 VLIVDKEEDFSKIQWDDETGVAALDEVLEKIDSPNKYSLGKTIDKAAHNLFGALRYFDGE 296

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                I      +  +  A  NRL +AAA 
Sbjct: 297 DKIKRIYVQGFDHGAISAAYMNRLNKAAAG 326


>gi|119383189|ref|YP_914245.1| Sua5/YciO/YrdC/YwlC family protein [Paracoccus denitrificans
           PD1222]
 gi|119372956|gb|ABL68549.1| translation factor SUA5 [Paracoccus denitrificans PD1222]
          Length = 316

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 141/326 (43%), Positives = 184/326 (56%), Gaps = 14/326 (4%)

Query: 1   MQIMSI-TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           MQ + +  D   +R A E L  G P+AIPTETVYGLA D+RNP A+ R+YE K RP+ NP
Sbjct: 1   MQTLILGHDPRGVRTAAELLAQGEPVAIPTETVYGLAGDARNPRAVARIYEAKGRPSFNP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI HV D++   + A  D  +L LA+ FWPG LTLVL L     I  L TA L T   RV
Sbjct: 61  LIVHVPDLAAAGRIADFDDAALALARAFWPGALTLVLPLRPDAGIASLVTAGLDTVAIRV 120

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSS--ICKEIPLIIDGGISKIGL 176
           P     ++++  +G PLA PSAN SG+IS T   H       +   I  ++D G   +G+
Sbjct: 121 PAHPAAQEVLRVFGGPLAAPSANPSGRISPTTAAHAADPETGLGGRIAAVLDAGACPVGV 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           ESTIV    + +  +LRPGG+  E ++  +   L     +   P +PG L SHYAPR+ +
Sbjct: 181 ESTIVGW-VDGQPALLRPGGVAAEAIEAVLGRPLARPEADPDAPTAPGQLTSHYAPRASL 239

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           RL A    P E LI FG V  +        + LS+TG L EAA  LF+ +  AD      
Sbjct: 240 RLNADAARPGEVLIGFGPVAGE--------MTLSETGDLTEAAARLFDLLHRADAEE-RP 290

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322
           IA + +P  GLG AIN+RL RAAAPR
Sbjct: 291 IAVAPVPERGLGAAINDRLRRAAAPR 316


>gi|257877103|ref|ZP_05656756.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC20]
 gi|257811269|gb|EEV40089.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus casseliflavus
           EC20]
          Length = 342

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I D   L +A   L  G  +A PTETVYGL   +  PTA+ ++Y++K RP+ NPL
Sbjct: 1   MET-KIFDQTQLNEAAAILAEGGLVAFPTETVYGLGASALLPTAVAQVYQVKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+++   ++       P +  L + FWPGPLTL+  +   + +  + T  L TA FR+
Sbjct: 60  IVHIAEPEQLEPFVDNKHPFADKLMETFWPGPLTLIFSIKKDS-LPSIVTGGLSTAAFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI+    PL  PSAN SG+ S T+  H+    +  +I  I+D G+++IG+ES
Sbjct: 119 PNNTKTLALIKQAQQPLVGPSANTSGKPSPTSAAHV-QHDLAGKIAGILDDGVTQIGVES 177

Query: 179 TIVNVQCE-KKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRS 234
           T++++        ILRPG +  E L+  +  ++   ++ V E+  P++PGM   HYAP +
Sbjct: 178 TVLDLSDPMAPPIILRPGAISKEQLEAVLQTKVLVDQHLVTESEAPKAPGMKYKHYAPNT 237

Query: 235 QVRLRAIHVNPREALIR----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
            V +      P                 G    + +     ++ L     ++ A   LF 
Sbjct: 238 NVMMVNDQDWPAAMAWAKEQQFKVGVLAGPTIAEQVRFEAAAIYLFFDDSVEAATKGLFA 297

Query: 285 YMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++  D+  +    +   + P  GLG A  NRL++AA
Sbjct: 298 GLRALDESIAELDVLFAPTFPESGLGAAYMNRLKKAA 334


>gi|259503692|ref|ZP_05746594.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus antri DSM 16041]
 gi|259168324|gb|EEW52819.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus antri DSM 16041]
          Length = 342

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 103/333 (30%), Positives = 167/333 (50%), Gaps = 19/333 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I   N + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV
Sbjct: 4   KIYRLNQIDEAAAAIRRGELVAFPTETVYGLGADATNEPAVKNVYLAKGRPSDNPLIVHV 63

Query: 65  SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           + ++MV+++ A +   +  L   FWPG LT++L +     +    T  L T  FR P   
Sbjct: 64  NSVAMVEQYAAEIPEKARKLMAAFWPGSLTIILKIKRGA-LSKTVTGGLSTVAFRFPDNQ 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T  LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST+++
Sbjct: 123 PTLDLIGKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKITGILDDGPTRVGVESTVLD 181

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRL-- 238
           +  E  V ILRPG +  + ++  I       + V +  TP++PGM   HYAP +QV +  
Sbjct: 182 MSTETPV-ILRPGAVTKQDIEGVIGSIDLNHHQVGKNETPKAPGMKYKHYAPSAQVYIVD 240

Query: 239 ---------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                    R I   P +  +      ++ +   + ++  S    + +A+  LF+ ++  
Sbjct: 241 DGTDWSTVVRWIAQQPFDVGVMAEEQILQQLTLPMNAVQFSLGTGVADASARLFDGLRGF 300

Query: 290 DDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
           DD     +I   + P   LG A  NRL ++A  
Sbjct: 301 DDQPNVKAIVTEAFPAKNLGRAYMNRLNKSAGG 333


>gi|315038004|ref|YP_004031572.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1112]
 gi|325956457|ref|YP_004291869.1| Sua5 family translation factor [Lactobacillus acidophilus 30SC]
 gi|312276137|gb|ADQ58777.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1112]
 gi|325333022|gb|ADZ06930.1| Sua5 family translation factor [Lactobacillus acidophilus 30SC]
 gi|327183284|gb|AEA31731.1| Sua5 family translation factor [Lactobacillus amylovorus GRL 1118]
          Length = 333

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/334 (32%), Positives = 166/334 (49%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + L +A + L  G  +A PTETVYGL   + N  +++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFKKDQLDEAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  +SD  M++++A  V   +  L K FWPGPLTL+L +   T +    T  LKT  FR 
Sbjct: 60  IVTISDEKMMERYAKEVPERAKTLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLKTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  +  + +LRPG +  E L + +  ++      V +   P++PGM   HYAP   
Sbjct: 178 TIIDLSVKTPI-VLRPGEITPEELSKVLGEKVLINTGKVSDKDVPKAPGMKYRHYAPSEP 236

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         I  N +  +   G++  K   +     +L +   L +A  NLF  ++ 
Sbjct: 237 VIVVDNPADFAKIDFNEKTGVAALGSILAKIDLSDDNKFDLGE--NLVDADHNLFGALRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 295 FDDKDNIETIYVQGFNEGEESLAYMNRLNKAAGG 328


>gi|329921099|ref|ZP_08277622.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G]
 gi|328935006|gb|EGG31495.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners SPIN 1401G]
          Length = 331

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   + + S    + EAA NLF  ++  D +    
Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326


>gi|146304759|ref|YP_001192075.1| translation factor SUA5 [Metallosphaera sedula DSM 5348]
 gi|145703009|gb|ABP96151.1| translation factor SUA5 [Metallosphaera sedula DSM 5348]
          Length = 350

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 106/342 (30%), Positives = 162/342 (47%), Gaps = 28/342 (8%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M ++ I   N     +RKA E + +G  +A PTETVYGL  ++ +P A  ++++ K+RP 
Sbjct: 1   MIVLKIDPLNPEIELIRKAAEVIRSGGLVAFPTETVYGLGGNALDPKAAEKVFKAKRRPM 60

Query: 57  MNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
            NPLI H++D+S +++    V P  L LA+  WPGPLT +L       +   +T  L T 
Sbjct: 61  DNPLIVHIADLSQLEEVSVDVPPEVLDLAQRVWPGPLTFILKRNP--RVPLETTGGLDTV 118

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      +LI   G P+A PSAN + + S T  +H++   +   + ++IDGG +  
Sbjct: 119 AVRMPAHPIALQLIRESGVPIAAPSANLATKPSPTLAEHVI-QDLDGSVDVVIDGGETFF 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHY 230
           G+ESTI+N+     V +LRPG   +E L   +  V +   V E        +PGM   HY
Sbjct: 178 GVESTIINLTVSPPV-LLRPGPFTVEELNSLLGEVVVPKEVAEGGQFNVALAPGMKYKHY 236

Query: 231 APRSQVRLRA-----------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279
           AP   + L             +    + A +          E  II   L  +  L   A
Sbjct: 237 APSKPLYLVEKKSIFKEVVKRLRQKKKVAALCSQETCADVDEPKII---LGTSENLYTVA 293

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            NLF   +  D            P  G+G+AI NR ++A+A 
Sbjct: 294 KNLFKSFRQLDTLDVDLGVMEPFPERGIGLAIMNRAKKASAH 335


>gi|259501683|ref|ZP_05744585.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335]
 gi|315653746|ref|ZP_07906666.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195]
 gi|259166968|gb|EEW51463.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners DSM 13335]
 gi|315489108|gb|EFU78750.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners ATCC 55195]
          Length = 338

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 167/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 12  IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 71

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 72  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 131 TNELIHTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 190 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 248

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   + + S    + EAA NLF  ++  D +    
Sbjct: 249 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 307

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 308 TIYVQGFAKGNISAAYMNRLNKAASG 333


>gi|312793262|ref|YP_004026185.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180402|gb|ADQ40572.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 348

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 112/337 (33%), Positives = 158/337 (46%), Gaps = 27/337 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI HVS 
Sbjct: 11  IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHVSS 70

Query: 67  ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M++  A + D     L + FWPGPLT+VL       I    TA L T   R+P     
Sbjct: 71  KDMLEMCAEITDERVYMLIERFWPGPLTIVLP--KKDVIPENVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  KH++   +  ++ +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMGKVDVIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQVRLR 239
            EK V ILRPG +    LK  +  ++EY          + P+SPGM   HYAP +++ + 
Sbjct: 188 GEKAV-ILRPGAISYFALKEVLG-DIEYSKSVVEGLTGTVPRSPGMKYKHYAPDAKLIIV 245

Query: 240 AIHVNPREALI--RFGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFN 284
              ++ R   I      +  K     I+                L      KE   NLF+
Sbjct: 246 KGRIDKRIDKINEMKKKLEFKGYNVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFS 305

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  +  G   I           +A+ NRL +AAA 
Sbjct: 306 ILRKFNQLGVDYILCEWGEFDLEFLALENRLYKAAAN 342


>gi|150401886|ref|YP_001325652.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014589|gb|ABR57040.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus aeolicus
           Nankai-3]
          Length = 341

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 111/345 (32%), Positives = 178/345 (51%), Gaps = 30/345 (8%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ + I + N +  A   +  G  +A PTETVYGL  D+ NP A+ +++++K RP  NPL
Sbjct: 1   MK-LKILNKNEIEIAANAIKDGDLVAFPTETVYGLGADALNPDAVEKIFKVKGRPIDNPL 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HV+++ M  K A +   +  L + F PGPLT++L       +  ++ ANL T   R+P
Sbjct: 60  IIHVNNLEMANKIAHITENAKILLQKFSPGPLTIIL--KKKEVVPAITCANLDTVAVRIP 117

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 +LIE    P+A PSAN SG+ S TN++HI+   +  +I   I+G  + IG+EST
Sbjct: 118 NNKIALELIEKANTPIAAPSANLSGKPSPTNIQHII-DDLGDKINYAIEGETT-IGVEST 175

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP----QSPGMLKSHYAPRSQ 235
           ++++  EKK +ILR G +  E LK+ I +EL     +        +SPGM  +HY+P + 
Sbjct: 176 VLDLT-EKKPKILRYGSITYEDLKKVIDIELIEINKQGKKIIKTVKSPGMKYTHYSPDAP 234

Query: 236 VRLRAIHVNPREALI---------------RFGNVPIKNIENA----IISLNLSKTGKLK 276
           + +   ++      I                 G +  +  ++     I  + L     LK
Sbjct: 235 LIMATGNIEEITGKINDLIKEYTEKGEKNENVGIIITEETKDKYPANIKKIVLGSRSDLK 294

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             + NLFN ++  D +G S I        GLG+AI +RLE+A++ 
Sbjct: 295 TISKNLFNSLREMDKNGVSIIFIEGFEKKGLGLAIMDRLEKASSK 339


>gi|331701220|ref|YP_004398179.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128563|gb|AEB73116.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 340

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 108/337 (32%), Positives = 167/337 (49%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ + I     L +A +F+  G  +A PTETVYGL  D+ N TA++++Y  K RP+ NPL
Sbjct: 1   METL-ILKQQQLDQAADFIRQGELVAFPTETVYGLGADATNETAVKKVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSDI+MV+K+       +  L   FWPG LT++  L     +    T  L TA FR 
Sbjct: 60  IVTVSDIAMVEKYTQPFSDDAKALMAKFWPGSLTMIFKLKPNA-LSKSVTGGLDTAAFRF 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G + +G+ES
Sbjct: 119 PKNQTTLDLISKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAIVDDGPTTVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++       ILRPG +  E ++  I   +    + V    TP++PGM   HYAP +Q
Sbjct: 178 TILDMSVATP-SILRPGAVTKEDIEAVIHRPVIDELHHVGAKQTPKAPGMKYKHYAPNAQ 236

Query: 236 VRLRAIHVNPREALIRFGN----VPIKNIENAIISLN-------LSKTGKLKEAAFNLFN 284
           V +     +  + +         + +   ++ I ++N       +S     + AA +LF 
Sbjct: 237 VYIVDPDDDWHDVVAWIKQHPQPIGVMAFDDIIKTINWPDNVDVISLGNDARTAAHDLFA 296

Query: 285 YMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+      I    I   G+G A  NRL ++A 
Sbjct: 297 ELRDFDNHPAYKIIFTQGIDPKGIGEAYMNRLNKSAG 333


>gi|312874663|ref|ZP_07734687.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2053A-b]
 gi|311089893|gb|EFQ48313.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2053A-b]
          Length = 331

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDYFWPGPLTLIL-FIKKGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   + + S    + EAA NLF  ++  D +    
Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326


>gi|313888752|ref|ZP_07822414.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845229|gb|EFR32628.1| Sua5/YciO/YrdC/YwlC family protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 351

 Score =  328 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 99/337 (29%), Positives = 168/337 (49%), Gaps = 26/337 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++K  + L  G  + +PTETVYGL  +  N    +++YE K RP+ NPLI H++D 
Sbjct: 14  DKVYIKKISQTLRDGGLVVLPTETVYGLGGNGLNKRTCKKIYEAKGRPSDNPLILHIADN 73

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +    A V  ++    K FWPGPLT++     +  +   +T  L T   R P      
Sbjct: 74  SQLDDLVAEVPEVAKKCIKKFWPGPLTIIFKR--SDKVPDEATGGLDTVAIREPSNKIAH 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            ++++   P+A PSAN SG+ S T V+H++   +   + +I+DGG S +G+EST+++V  
Sbjct: 132 DILKSVDFPVAAPSANLSGRPSPTKVEHVI-EDLDGRVDIIVDGGHSVVGIESTVLDVTV 190

Query: 186 EKKVRILRPGGLEIETLKRA---ISVELEYCVDET-STPQSPGMLKSHYAPRSQVRLRAI 241
           +  + ILRPG + +E L+     I+++      ++   P+SPG    HYAPR++      
Sbjct: 191 DPPM-ILRPGKITLENLQEVDERITIDSATIDSKSHEVPKSPGQKYRHYAPRAEAICFGG 249

Query: 242 HVNPREALIRFGNVPIKNIENAIIS----------------LNLSKTGKLKEAAFNLFNY 285
            ++     I+      K  + A+++                +NL     L+E A NLF+ 
Sbjct: 250 RLDKLINEIKKNIEENKGKKIAVLATEETYDEYENTGVELLINLGSREHLEEVATNLFDA 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           ++  D+     I        G+G++I NRL +A   +
Sbjct: 310 LRRCDEEDIDIIFAEGFELRGMGLSIMNRLLKACGGK 346


>gi|302872090|ref|YP_003840726.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574949|gb|ADL42740.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 348

 Score =  328 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 159/336 (47%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S 
Sbjct: 11  IDYEKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISS 70

Query: 67  ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M++  A + D     L + FWPGPLT+VL       +    TA L T   R+P     
Sbjct: 71  KEMLEMCAEITDEKVYVLIERFWPGPLTIVLP--KKNVVADNVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  KH++   +  ++ +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMNKVDVIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240
             + V ILRPG +    LK  +  +E    V E    S P+SPGM   HYAP +++ +  
Sbjct: 188 GGEAV-ILRPGAISYYALKEVLGNIEYSKAVVEGLSGSVPRSPGMKYKHYAPDAKLIIVK 246

Query: 241 IHVNPREALI--RFGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNY 285
             ++ R   I      + +K     I+                L      KE   NLF+ 
Sbjct: 247 GRIDKRIDKINEMKKKLELKGYRVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSL 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  +  G   I       +   +A+ NRL +AAA 
Sbjct: 307 LRKFNQLGVDYILCEWGEFNLEFLALENRLYKAAAN 342


>gi|212697122|ref|ZP_03305250.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675897|gb|EEB35504.1| hypothetical protein ANHYDRO_01688 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 345

 Score =  328 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 111/341 (32%), Positives = 172/341 (50%), Gaps = 25/341 (7%)

Query: 2   QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D N L+ A + +  G  +A PTETVYGL  D  NP A R++++ K RP  
Sbjct: 4   EILKIDRENVDENILKHAAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPED 63

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+ +   + +    VD  +  L K  WPGPLT++L    ++ I  + T    T  
Sbjct: 64  NPLILHIDEDYKLDELVEEVDDRTKFLIKNLWPGPLTVIL--KKSSKIPDIITGGGDTVA 121

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P     ++ I+    P+A PSAN SG+ S TN K +    +   IPLIIDGG S IG
Sbjct: 122 VRRPKDKLAREFIKFCNRPIAAPSANISGRPSPTNAKDVFYD-MDGRIPLIIDGGSSDIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST++++  E    ILRPG    E +K+ I      +  VD+T  P+SPG    HYAP+
Sbjct: 181 IESTVIDMSLENPC-ILRPGYYTYEYIKKFIPNVCLDDSLVDDTKVPRSPGQKYKHYAPK 239

Query: 234 SQV----------RLRAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAF 280
           +Q+          ++  + +  +    + G +         ++ I+L+L     L E + 
Sbjct: 240 AQMKVFVGEKSVEKINDLALKYKNDGKKVGILVFNKYTEKFSSYITLSLGDKENLIEMSH 299

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            LF  ++  D  G   I    +   GLG +I NR++++A+ 
Sbjct: 300 VLFEALRDLDRKGVDIILAQGVEEIGLGKSIMNRMKKSASG 340


>gi|229545078|ref|ZP_04433803.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322]
 gi|229309970|gb|EEN75957.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1322]
          Length = 340

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 103/316 (32%), Positives = 171/316 (54%), Gaps = 21/316 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI-------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            + I                +   +      ++ A   LF  ++  D+ GA++I      
Sbjct: 259 QEKIGLFLSDKQAAQLDTENVFVYSYGAE-TVENATKELFAGLRALDEQGATTIFAQGFA 317

Query: 304 NHGLGIAINNRLERAA 319
             GLG A  NRL+++A
Sbjct: 318 ETGLGTAYMNRLKKSA 333


>gi|157826326|ref|YP_001494046.1| hypothetical protein A1C_06575 [Rickettsia akari str. Hartford]
 gi|157800284|gb|ABV75538.1| hypothetical protein A1C_06575 [Rickettsia akari str. Hartford]
          Length = 312

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 121/315 (38%), Positives = 175/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA NPLI HV  I   K
Sbjct: 2   VSKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPASNPLIVHVFSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +    + L++ +A+ FW GPL++V+ L    +I P + A L T   R+P      +LI  
Sbjct: 62  EIGEFNDLAIKIAEKFWSGPLSIVVPLKENANIAPSAAAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  S+ GLESTI++      
Sbjct: 122 SGVPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSEYGLESTIIDTTTATP 181

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G + +E L+  + V++     ETS  ++PGML  HY+P+  +RL AI++   E 
Sbjct: 182 -TILREGFITVEILEEVLRVKV-LKASETSAIKAPGMLAKHYSPKVPIRLNAINLEYNEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + FGN  +        SLNLS  G L EAA NL+ Y++I DD       S IA + IP 
Sbjct: 240 SVNFGNSNL----TGRFSLNLSTKGNLIEAAANLYAYLRILDDYAAAHDVSGIAVAPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 ENIGAAINDRLKRAA 310


>gi|256961205|ref|ZP_05565376.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96]
 gi|293384154|ref|ZP_06630048.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712]
 gi|293386968|ref|ZP_06631537.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613]
 gi|312907895|ref|ZP_07766878.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
           512]
 gi|312978576|ref|ZP_07790314.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
           516]
 gi|256951701|gb|EEU68333.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis Merz96]
 gi|291078634|gb|EFE15998.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis R712]
 gi|291083638|gb|EFE20601.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis S613]
 gi|310625986|gb|EFQ09269.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
           512]
 gi|311288725|gb|EFQ67281.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis DAPTO
           516]
 gi|315161812|gb|EFU05829.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0645]
          Length = 340

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG--- 253
            E L+  IS V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258

Query: 254 -----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
                           + ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|126701105|ref|YP_001090002.1| hypothetical protein CD3482 [Clostridium difficile 630]
 gi|260685001|ref|YP_003216286.1| hypothetical protein CD196_3272 [Clostridium difficile CD196]
 gi|260688659|ref|YP_003219793.1| hypothetical protein CDR20291_3318 [Clostridium difficile R20291]
 gi|260211164|emb|CBA66618.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260214676|emb|CBE07311.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 353

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 22/331 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++   + L  G  +  PTETVYGL  ++ +  A++++YE K RP+ NPLI H+ +   
Sbjct: 23  EEIKIQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEE 82

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           V   A  +   +  + +  WPGP+T++L+      I   ++  L T   R+P     + +
Sbjct: 83  VYDLAKDISDKAKLVIEKLWPGPITIILN--KKDIIPYKTSGGLDTVAIRMPSNVIARAI 140

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN SG+ S T  KH+    +   +  I+ GG S  GLEST++++  E+
Sbjct: 141 IKEAGIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDLT-EE 198

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHV 243
              ILRPG +  E L+  +  V+L+  + +       ++PGM   HY+P + V + +   
Sbjct: 199 TPMILRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKR 258

Query: 244 N------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                         R+  ++ G + I           +     L+E A NLF+ +   D 
Sbjct: 259 ENVATKINDMIKSNRDKGLKTGVMCISRNREFYDGEVIDLGNSLEEVASNLFDALIEMDK 318

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            G   I     P  G+G AI NRL ++A  +
Sbjct: 319 KGVDVIYSEEFPKTGVGQAIMNRLLKSAGYK 349


>gi|309808063|ref|ZP_07701981.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308168665|gb|EFO70765.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 331

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L +     +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDYFWPGPLTLILFIKEGA-LPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI+T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIQTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   + + S    + EAA NLF  ++  D +    
Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326


>gi|126459742|ref|YP_001056020.1| translation factor SUA5 [Pyrobaculum calidifontis JCM 11548]
 gi|126249463|gb|ABO08554.1| translation factor SUA5 [Pyrobaculum calidifontis JCM 11548]
          Length = 342

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 102/329 (31%), Positives = 163/329 (49%), Gaps = 16/329 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +++A E L  G  +A PTETVYGL   + +    R+++++K+RP  NPLI HV  +
Sbjct: 11  DPDVVKRAAEVLRRGGVVAAPTETVYGLFAHAYSEAGCRKVFQVKRRPMDNPLIVHVDSV 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            M +  A + P    + +  WPGP+T+V+       +    TA L T   R P       
Sbjct: 71  EMAETVAYIPPELRDILRRVWPGPITVVVKSRGV--LPRCVTAGLDTVAVRAPAHPIPLA 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I   G P+A PSANR+G+ S T  +H+L   +  E+ LI+DGG +  G+ESTIV+V   
Sbjct: 129 IIRELGAPIAGPSANRAGRPSPTTAEHVL-EDLGDEVDLIVDGGPTFFGVESTIVDVTRT 187

Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             V +LRPG   +E L++         +   + E     +PGM   HYAP + + +    
Sbjct: 188 PPV-LLRPGPFTVEELEKFFGRVEVPPVARGLAEADVALAPGMKYRHYAPETPLVIVHFD 246

Query: 243 VNPREAL-----IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           +           +R   + +     A  ++ L   G L EAA NL++ ++  D  G    
Sbjct: 247 LEEAVKWLEARGLRVAVLCVGECPKAKRTIPLG--GDLYEAAKNLYDALRQLDKLGVDIG 304

Query: 298 AFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
              ++   G+G+AI NRL +A+  R   +
Sbjct: 305 VVPAVEERGIGLAIMNRLRKASGHREARR 333


>gi|254977106|ref|ZP_05273578.1| hypothetical protein CdifQC_17418 [Clostridium difficile QCD-66c26]
 gi|255094434|ref|ZP_05323912.1| hypothetical protein CdifC_17521 [Clostridium difficile CIP 107932]
 gi|255102691|ref|ZP_05331668.1| hypothetical protein CdifQCD-6_17911 [Clostridium difficile
           QCD-63q42]
 gi|255308512|ref|ZP_05352683.1| hypothetical protein CdifA_18121 [Clostridium difficile ATCC 43255]
 gi|255316186|ref|ZP_05357769.1| hypothetical protein CdifQCD-7_17609 [Clostridium difficile
           QCD-76w55]
 gi|255518847|ref|ZP_05386523.1| hypothetical protein CdifQCD-_17148 [Clostridium difficile
           QCD-97b34]
 gi|255652026|ref|ZP_05398928.1| hypothetical protein CdifQCD_17710 [Clostridium difficile
           QCD-37x79]
 gi|306521768|ref|ZP_07408115.1| hypothetical protein CdifQ_20080 [Clostridium difficile QCD-32g58]
 gi|328887821|emb|CAJ70385.2| putative RNA-binding protein [Clostridium difficile]
          Length = 346

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 22/331 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++   + L  G  +  PTETVYGL  ++ +  A++++YE K RP+ NPLI H+ +   
Sbjct: 16  EEIKIQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEE 75

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           V   A  +   +  + +  WPGP+T++L+      I   ++  L T   R+P     + +
Sbjct: 76  VYDLAKDISDKAKLVIEKLWPGPITIILN--KKDIIPYKTSGGLDTVAIRMPSNVIARAI 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN SG+ S T  KH+    +   +  I+ GG S  GLEST++++  E+
Sbjct: 134 IKEAGIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDLT-EE 191

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHV 243
              ILRPG +  E L+  +  V+L+  + +       ++PGM   HY+P + V + +   
Sbjct: 192 TPMILRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKR 251

Query: 244 N------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                         R+  ++ G + I           +     L+E A NLF+ +   D 
Sbjct: 252 ENVATKINDMIKSNRDKGLKTGVMCISRNREFYDGEVIDLGNSLEEVASNLFDALIEMDK 311

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            G   I     P  G+G AI NRL ++A  +
Sbjct: 312 KGVDVIYSEEFPKTGVGQAIMNRLLKSAGYK 342


>gi|302191109|ref|ZP_07267363.1| hypothetical protein LineA_03797 [Lactobacillus iners AB-1]
 gi|312873862|ref|ZP_07733905.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2052A-d]
 gi|325913035|ref|ZP_08175408.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B]
 gi|311090644|gb|EFQ49045.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners LEAF
           2052A-d]
 gi|325477715|gb|EGC80854.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus iners UPII 60-B]
          Length = 331

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 106/326 (32%), Positives = 167/326 (51%), Gaps = 14/326 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + + +++A + L  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI  V+
Sbjct: 5   IFNKDNIKQAAQLLAQGELVAFPTETVYGLGADATNEEAVKNVYRAKGRPSDNPLIVTVA 64

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           D +M+KK+   +   +  L   FWPGPLTL+L  +    +    T  L TA FR P    
Sbjct: 65  DEAMMKKYVTEIPADAQKLIDHFWPGPLTLIL-FVKEGALPDAVTGGLPTAAFRCPQDPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI T   P+  PSAN S + S T  +H+    +  +I  IID G +KIGLESTI+++
Sbjct: 124 TNELIHTLARPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDNGPTKIGLESTIIDL 182

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
             ++ V +LRPG +  + L   +  ++   +  V     P++PGM   HYAP S V +  
Sbjct: 183 SVDQPV-VLRPGEITPDELSEVLHKKVLLNKGTVQTKDVPKAPGMKYRHYAPSSPVYIVD 241

Query: 241 IHVN----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD-DSGAS 295
              +    P ++ +    +   N+ +   + + S    + EAA NLF  ++  D +    
Sbjct: 242 DPADFAYIPHDSSVGVAALA-DNLHDLGDADSFSLGVSIDEAAHNLFGALRYFDSNEQIK 300

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
           +I         +  A  NRL +AA+ 
Sbjct: 301 TIYVQGFAKGNISAAYMNRLNKAASG 326


>gi|315032689|gb|EFT44621.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0017]
 gi|315143716|gb|EFT87732.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2141]
          Length = 340

 Score =  328 bits (841), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 174/315 (55%), Gaps = 19/315 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI-----ENAIISLN-----LSKTG--KLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
            + I     +     L+     +   G   ++ A   LF  ++  D+ GA++I       
Sbjct: 259 QEKIGLFLSDEQAAQLDTENTFVYSYGAETVENATKELFAGLRALDEQGATTIFAQGFAE 318

Query: 305 HGLGIAINNRLERAA 319
            GLG A  NRL+++A
Sbjct: 319 TGLGTAYMNRLKKSA 333


>gi|257081920|ref|ZP_05576281.1| translation factor SUA5 [Enterococcus faecalis E1Sol]
 gi|307287619|ref|ZP_07567662.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109]
 gi|256989950|gb|EEU77252.1| translation factor SUA5 [Enterococcus faecalis E1Sol]
 gi|306501357|gb|EFM70660.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0109]
 gi|315165016|gb|EFU09033.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1302]
          Length = 340

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 103/316 (32%), Positives = 171/316 (54%), Gaps = 21/316 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258

Query: 257 IKNI-------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            + I                +   +      ++ A   LF  ++  D+ GA++I      
Sbjct: 259 QEKIGLFLSDKQAAQLDTENVFVYSYGAE-TVENATKELFAGLRALDEQGATTIFAQGFA 317

Query: 304 NHGLGIAINNRLERAA 319
             GLG A  NRL+++A
Sbjct: 318 ETGLGTAYMNRLKKSA 333


>gi|325847835|ref|ZP_08170057.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480853|gb|EGC83906.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 345

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 110/341 (32%), Positives = 172/341 (50%), Gaps = 25/341 (7%)

Query: 2   QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D N L+ A + +  G  +A PTETVYGL  D  NP A R++++ K RP  
Sbjct: 4   EILKIDRENVDENILKHAAKIIKNGDLVAFPTETVYGLGADGLNPEASRKIFKAKNRPED 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+ +   + +    VD  +  L K  WPGPLT++L    ++ I  + T    T  
Sbjct: 64  NPLILHIDEDYKLDELVEKVDERTKFLIKNLWPGPLTVIL--KKSSKIPDIITGGGDTVA 121

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P     ++ I+    P+A PSAN SG+ S TN K +    +   IPLIIDGG S IG
Sbjct: 122 VRRPKDKLAREFIKFCDRPIAAPSANISGRPSPTNAKDVFYD-MNGRIPLIIDGGSSDIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST++++  E    ILRPG    E +K+ I      +  +D+T  P+SPG    HYAP+
Sbjct: 181 IESTVIDMSLENPC-ILRPGYYTYEYIKKFIPNVCLDDSLLDDTKVPRSPGQKYKHYAPK 239

Query: 234 SQV----------RLRAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAF 280
           +Q+          ++  + +  +    + G +         ++ I+L+L     L E + 
Sbjct: 240 AQMKVFVGEKSVEKINDLALKYKNDGKKVGILVFNKYTEKFSSYITLSLGDKENLIEMSH 299

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            LF  ++  D  G   I    +   GLG +I NR++++A+ 
Sbjct: 300 VLFEALRDLDRKGVDIILAQGVEEIGLGKSIMNRMKKSASG 340


>gi|166033062|ref|ZP_02235891.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC
           27755]
 gi|166027419|gb|EDR46176.1| hypothetical protein DORFOR_02784 [Dorea formicigenerans ATCC
           27755]
          Length = 353

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 167/334 (50%), Gaps = 25/334 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A +FL  G  +A PTETVYGL  D+ N TA  ++Y  K RP+ NPLI H++++ 
Sbjct: 19  KKIIGQAGDFLKEGGLVAFPTETVYGLGADALNKTASTKIYAAKGRPSDNPLIVHITNMG 78

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            + K A + P  +  +A  +WPGPLT++     T ++   +T  L T   R+P     + 
Sbjct: 79  ALDKIADIIPEVAYKVADAYWPGPLTMIFQ--KTEEVPYETTGGLDTVAVRMPSDEIARA 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G  +A PSAN SG+ S T  +H+    +  +I +I+DGG   IG+ESTI+++   
Sbjct: 137 LIDAGGGYIAAPSANTSGRPSPTKAEHV-EEDLSGKIEMILDGGAVDIGVESTILDMTVT 195

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPR--------- 233
             + ILRPG +  E L   I  V+++  +   D    P++PGM   HYAP+         
Sbjct: 196 PPM-ILRPGAITKEMLTELIGEVDIDRTLITPDSKVKPKAPGMKYRHYAPKADLSIVEGP 254

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMK 287
            ++ + AI+    E + +   V +           A +  ++         A +L+  ++
Sbjct: 255 MELVIDAINQMSAERMAKGHRVGVIGTQETVGRYKADVVKSIGTRADEATIANHLYAVLR 314

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             DD+    I   S    G+G AI NRL +AA  
Sbjct: 315 EFDDAEVEYIYSESFAAGGIGSAIMNRLLKAAGH 348


>gi|320100446|ref|YP_004176038.1| translation factor SUA5 [Desulfurococcus mucosus DSM 2162]
 gi|319752798|gb|ADV64556.1| translation factor SUA5 [Desulfurococcus mucosus DSM 2162]
          Length = 357

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 102/340 (30%), Positives = 165/340 (48%), Gaps = 31/340 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + KA E L     +A PTETVYGL   +    A+ ++++ K RP  NPLI HVS +
Sbjct: 13  DKEVIDKAAEILLNRGLVAFPTETVYGLGAVAYYEDAVLKVFKAKMRPPDNPLIIHVSSL 72

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
            M+ + A+ +   +  L + FWPGPLTL+L    +  I  + T  L T   R+P      
Sbjct: 73  DMLNEVATGIPDDAYRLIEKFWPGPLTLILPRHPS--IPRVVTGGLDTVAVRMPGHPVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI+  G P+A PSAN SG+ S T  +H++   +   +  IID G +  G+EST+VN+  
Sbjct: 131 KLIDATGRPVAAPSANISGRPSPTTGEHVIRD-LMGRVDAIIDAGETFFGVESTVVNILE 189

Query: 186 EKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +  V +LRPG   +E +++A+  ++        +  +    +PGM   HY+P +++ L  
Sbjct: 190 DPPV-LLRPGAYPVEEVEKALGKKIVIPEFARGLAYSEIALAPGMKYRHYSPEAKLILVE 248

Query: 241 IHVNPREALIRFGNVP--------------------IKNIENAIISLNLSKTGKLKEAAF 280
              +      R                          +++ N      L     L E A 
Sbjct: 249 AEGSYEYIAGRVIEAARSLGGVGELCVISSSETMHYYRSLSNVKAVFTLGSRVNLYEVAR 308

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           NLF  +++ D++G   +   S P  G+G+A+ NRL +A++
Sbjct: 309 NLFKVLRLVDEAGCRVVFSESFPETGIGLAVMNRLRKASS 348


>gi|255975088|ref|ZP_05425674.1| translation factor SUA5 [Enterococcus faecalis T2]
 gi|307285599|ref|ZP_07565738.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860]
 gi|255967960|gb|EET98582.1| translation factor SUA5 [Enterococcus faecalis T2]
 gi|306502823|gb|EFM72088.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0860]
          Length = 340

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 102/316 (32%), Positives = 170/316 (53%), Gaps = 21/316 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258

Query: 257 IKNI-------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            + I                +   +      ++ A   LF  ++  D+ GA++I      
Sbjct: 259 QEKIGLFLSDKQAAQLDTENVFVYSYGAE-TVENATKELFAGLRALDEQGATTIFAQGFA 317

Query: 304 NHGLGIAINNRLERAA 319
             GLG A  NRL+++A
Sbjct: 318 ETGLGTAYMNRLKKSA 333


>gi|104773787|ref|YP_618767.1| Sua5 family translation factor [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422868|emb|CAI97530.1| Putative translation factor (Sua5 family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 331

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 160/334 (47%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     L +A   L  G  +A PTETVYGL   +    +++++Y  K RP+ NPL
Sbjct: 1   MET-KIFKREQLDEAVSLLREGGLVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  V+D +M++ +A  V   +  L K FWPGPLT++L L     +    T  L T  FR 
Sbjct: 60  IVTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESVTGGLPTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  I+DGG +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++       +LRPG +  E + + +  E+      V +   P++PGM   HYAP +Q
Sbjct: 178 TIVDLSVN-PAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQ 236

Query: 236 VRL-------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         + ++    ++   ++            NL K   L EA  NLF  ++ 
Sbjct: 237 VYVVDQAETFDKLDLDASCGVMATSDLLENLPVPEENKFNLGK--NLTEADHNLFAGLRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     SI           +A  NRL +AA  
Sbjct: 295 FDDRPEIKSIYVEGFDQGEESLAYMNRLNKAAGG 328


>gi|15604678|ref|NP_221196.1| hypothetical protein RP848 [Rickettsia prowazekii str. Madrid E]
 gi|3861373|emb|CAA15272.1| unknown [Rickettsia prowazekii]
 gi|292572509|gb|ADE30424.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein
           [Rickettsia prowazekii Rp22]
          Length = 313

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/315 (37%), Positives = 172/315 (54%), Gaps = 12/315 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HV+ I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVTSIVQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
                + L+  +A  FWPGPL++V+ L    +I P  TA L T   R+P       LI  
Sbjct: 62  AIGEFNKLAEKIASKFWPGPLSIVVPLKDNVNIAPSVTAGLNTIALRIPSYPIALALIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
              P+A PSAN S  IS TN +H+           I+   I   + GLESTI++      
Sbjct: 122 SVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILAPEIYQCEYGLESTIID-TTTVI 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + V++    +  S  ++PGMLK HY+P   VRL AI++N +E 
Sbjct: 181 PTILREGFITSEILEELLGVKILKASEINSIVKAPGMLKKHYSPNVHVRLNAINLNDKEI 240

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSIPN 304
            + FGN  +        +LNLS  G + EAA NL++Y++I DD   S     IA + +P 
Sbjct: 241 GLNFGNSNL----TGKFALNLSTEGNIIEAAANLYSYLRILDDYAVSNDINCIAVAPVPL 296

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 297 TNIGAAINDRLKRAA 311


>gi|312134922|ref|YP_004002260.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor owensensis
           OL]
 gi|311774973|gb|ADQ04460.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor owensensis
           OL]
          Length = 348

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 157/336 (46%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S 
Sbjct: 11  IDYEKLEKAASILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIVHISS 70

Query: 67  ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M+   A + D     L + FWPGPLT+VL       I    TA L T   R+P     
Sbjct: 71  KEMLGMCAEITDERVYMLIERFWPGPLTIVLP--KKNSIPDNVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI     P+A PSAN SG+ S T  KH++   +  ++ +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSDVPVAAPSANVSGKPSPTEAKHVI-EDLMNKVDVIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQV---- 236
             + V ILRPG +    LK  +  +E    V E    + P+SPGM   HYAP +++    
Sbjct: 188 GGEAV-ILRPGAISYYALKEVLGNIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246

Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIENAI------ISLNLSKTGKLKEAAFNLFNY 285
                R+  I+   ++   +   V I               L L      KE   NLF+ 
Sbjct: 247 GRIDKRIDKINEMKKKLEFKAHRVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFSL 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  +  G   I       +   +A+ NRL +AAA 
Sbjct: 307 LRKFNQLGVDYILCEWGEFNLEFLALENRLYKAAAN 342


>gi|157964998|ref|YP_001499822.1| Sua5/YciO/YrdC/YwlC family translation factor protein [Rickettsia
           massiliae MTU5]
 gi|157844774|gb|ABV85275.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein
           [Rickettsia massiliae MTU5]
          Length = 312

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 176/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +   ++ L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 62  EIGELNDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN +  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPANYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETST ++PGML  HY+P+  VRL AI++  +E 
Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSTIKAPGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + FGN  +        SLNLS  G   EAA NL+ Y++I DD         IA S IP 
Sbjct: 240 GLNFGNSNL----TGRFSLNLSVKGNFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|327535786|gb|AEA94620.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis OG1RF]
          Length = 340

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|29377040|ref|NP_816194.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583]
 gi|227554050|ref|ZP_03984097.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22]
 gi|229549322|ref|ZP_04438047.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
           29200]
 gi|255972031|ref|ZP_05422617.1| translation factor SUA5 [Enterococcus faecalis T1]
 gi|256763195|ref|ZP_05503775.1| translation factor SUA5 [Enterococcus faecalis T3]
 gi|256957796|ref|ZP_05561967.1| translation factor SUA5 [Enterococcus faecalis DS5]
 gi|256963676|ref|ZP_05567847.1| translation factor SUA5 [Enterococcus faecalis HIP11704]
 gi|257079734|ref|ZP_05574095.1| translation factor SUA5 [Enterococcus faecalis JH1]
 gi|257084462|ref|ZP_05578823.1| translation factor SUA5 [Enterococcus faecalis Fly1]
 gi|257419963|ref|ZP_05596957.1| translation factor SUA5 [Enterococcus faecalis T11]
 gi|294779686|ref|ZP_06745076.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1]
 gi|300860679|ref|ZP_07106766.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|307271622|ref|ZP_07552893.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855]
 gi|312953586|ref|ZP_07772423.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102]
 gi|29344506|gb|AAO82264.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis V583]
 gi|227176798|gb|EEI57770.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis HH22]
 gi|229305559|gb|EEN71555.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
           29200]
 gi|255963049|gb|EET95525.1| translation factor SUA5 [Enterococcus faecalis T1]
 gi|256684446|gb|EEU24141.1| translation factor SUA5 [Enterococcus faecalis T3]
 gi|256948292|gb|EEU64924.1| translation factor SUA5 [Enterococcus faecalis DS5]
 gi|256954172|gb|EEU70804.1| translation factor SUA5 [Enterococcus faecalis HIP11704]
 gi|256987764|gb|EEU75066.1| translation factor SUA5 [Enterococcus faecalis JH1]
 gi|256992492|gb|EEU79794.1| translation factor SUA5 [Enterococcus faecalis Fly1]
 gi|257161791|gb|EEU91751.1| translation factor SUA5 [Enterococcus faecalis T11]
 gi|294453240|gb|EFG21652.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis PC1.1]
 gi|300849718|gb|EFK77468.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|306511500|gb|EFM80499.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0855]
 gi|310628424|gb|EFQ11707.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0102]
 gi|315035854|gb|EFT47786.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0027]
 gi|315151853|gb|EFT95869.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0031]
 gi|315159266|gb|EFU03283.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0312]
 gi|315170193|gb|EFU14210.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1342]
 gi|315172488|gb|EFU16505.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1346]
 gi|315574710|gb|EFU86901.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309B]
 gi|315580978|gb|EFU93169.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0309A]
 gi|323481492|gb|ADX80931.1| SUA5 domain protein [Enterococcus faecalis 62]
 gi|329578088|gb|EGG59501.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1467]
          Length = 340

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|307270731|ref|ZP_07552022.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248]
 gi|306513041|gb|EFM81682.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4248]
          Length = 340

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 176/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLSEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|256616931|ref|ZP_05473777.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
           4200]
 gi|307276804|ref|ZP_07557915.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134]
 gi|256596458|gb|EEU15634.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis ATCC
           4200]
 gi|306506441|gb|EFM75600.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2134]
          Length = 340

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/315 (33%), Positives = 174/315 (55%), Gaps = 19/315 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258

Query: 257 IKNI-----ENAIISLN-----LSKTG--KLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
            + I     ++    L+     +   G   ++ A   LF  ++  D+ GA++I       
Sbjct: 259 QEKIGLFLSDDQAAQLDTENAFVYSYGAETVENATKELFAGLRALDEQGATTIFAQGFAE 318

Query: 305 HGLGIAINNRLERAA 319
            GLG A  NRL+++A
Sbjct: 319 TGLGTAYMNRLKKSA 333


>gi|295687746|ref|YP_003591439.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter segnis ATCC 21756]
 gi|295429649|gb|ADG08821.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter segnis ATCC 21756]
          Length = 325

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 120/313 (38%), Positives = 172/313 (54%), Gaps = 11/313 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A   L AG  + +PTETVYGL  D+ NPTA+  ++E K RP  NPLI HV+D+ 
Sbjct: 20  QAEIEAAASALRAGGLVILPTETVYGLGADAANPTAVAAIFEAKGRPRFNPLIAHVADLE 79

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
             ++ A  D  +  LA+ FWPGPLT+V  +   + +  L+ A L T   RVP     + +
Sbjct: 80  TAERIADFDHRARDLAREFWPGPLTIVAPIKDASVVCDLARAGLDTVAIRVPGHPVSRAV 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G  +  PSANRSG+ S T     ++ +   +    +DGG   +GLEST+V+V  + 
Sbjct: 140 LAAFGGAVVAPSANRSGRPSPTTYADAMAET-GDKAAAALDGGPCAVGLESTVVSVL-DG 197

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           + R+LRPG +    L++ +         +    +SPG L  HYAP + VR+ A    P E
Sbjct: 198 QARLLRPGAVTRVQLQQIVG---PLAEADDDAKRSPGRLALHYAPDAPVRINAKAPKPGE 254

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
           A + FG        +     NLS TG L EAA NLF+Y++ AD +  S+IA + IP  GL
Sbjct: 255 AFLAFG-----GGASGEGVFNLSPTGDLAEAASNLFSYLRAADRTHPSAIAVAPIPEEGL 309

Query: 308 GIAINNRLERAAA 320
           G AIN+RL RAA 
Sbjct: 310 GEAINDRLRRAAG 322


>gi|227892678|ref|ZP_04010483.1| Sua5 family translation factor [Lactobacillus ultunensis DSM 16047]
 gi|227865549|gb|EEJ72970.1| Sua5 family translation factor [Lactobacillus ultunensis DSM 16047]
          Length = 339

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 161/334 (48%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + L +A + L  G  +A PTETVYGL   + N  +++ +Y  K RP+ NPL
Sbjct: 7   MET-KIFKKDQLDEAVKLLAKGELVAFPTETVYGLGAIATNEKSVKGVYAAKGRPSDNPL 65

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VS   M++++A  V   +  L K FWPGPLTL+L +   T +    T  L T  FR 
Sbjct: 66  IVTVSGEKMMERYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 124

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLES
Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIIDGGPTRVGLES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235
           TI+++  +  + +LRPG +  E L   +  ++        +   P++PGM   HYAP   
Sbjct: 184 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 242

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         I+ N +  +   G+V  K         +L     L +A  NLF  ++ 
Sbjct: 243 VIVVDDPADFSKINFNEKTGVAALGSVLAKIDLPKENKFDLG--NNLVDADHNLFGGLRY 300

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 301 FDDMDNIETIYVQGFNEGEESLAYMNRLNKAAGG 334


>gi|116513793|ref|YP_812699.1| putative translation factor (SUA5) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093108|gb|ABJ58261.1| translation factor SUA5 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125451|gb|ADY84781.1| Putative translation factor SUA5 family [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 331

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 160/334 (47%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     L +A   L  G  +A PTETVYGL   +    +++++Y  K RP+ NPL
Sbjct: 1   MET-KIFKREQLDEAVSLLREGGLVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  V+D +M++ +A  V   +  L K FWPGPLT++L L     +    T  L T  FR 
Sbjct: 60  IVTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESVTGGLPTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  I+DGG +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++       +LRPG +  E + + +  E+      V +   P++PGM   HYAP +Q
Sbjct: 178 TIVDLSVN-PAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQ 236

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         + ++    ++   ++            NL K   L EA  NLF  ++ 
Sbjct: 237 VYVVDQAETFAKLDLDASCGVMATSDLLENLPVPEENKFNLGK--NLTEADHNLFAGLRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     SI           +A  NRL +AA  
Sbjct: 295 FDDRPEIKSIYVEGFDQGEESLAYMNRLNKAAGG 328


>gi|257090698|ref|ZP_05585059.1| translation factor SUA5 [Enterococcus faecalis CH188]
 gi|312905239|ref|ZP_07764359.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635]
 gi|256999510|gb|EEU86030.1| translation factor SUA5 [Enterococcus faecalis CH188]
 gi|310631476|gb|EFQ14759.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0635]
 gi|315579266|gb|EFU91457.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0630]
          Length = 340

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 174/315 (55%), Gaps = 19/315 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258

Query: 257 IKNI-----ENAIISLNL-----SKTG--KLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
            + I     +     L++        G   ++ A   LF  ++  D+ GA++I       
Sbjct: 259 QEKIGLFLSDKQAAQLDIENVFVYSYGAETVENATKELFAGLRALDEQGATTIFAQGFAE 318

Query: 305 HGLGIAINNRLERAA 319
            GLG A  NRL+++A
Sbjct: 319 TGLGTAYMNRLKKSA 333


>gi|15921819|ref|NP_377488.1| hypothetical protein ST1526 [Sulfolobus tokodaii str. 7]
 gi|328877147|pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With
           L-Threonine And Amppnp
 gi|15622606|dbj|BAB66597.1| 352aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 352

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 101/338 (29%), Positives = 158/338 (46%), Gaps = 23/338 (6%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI+ I     + + ++ A + +  G  +A PTETVYGL  ++ +  A  ++++ K RP  
Sbjct: 3   QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVD 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++D + + + A  +    L +A++ WPGPLT VL    T  +    TA L T  
Sbjct: 63  NPLIVHIADFNQLFEVAKDIPDKVLEIAQIVWPGPLTFVL--KKTERVPKEVTAGLDTVA 120

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P      +LI   G P+A PSAN + + S T  + ++   +   + +IIDGG +  G
Sbjct: 121 VRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVD-LNGRVDVIIDGGHTFFG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231
           +ESTI+NV  E  V +LRPG   IE LK+        E      E     +PGM   HYA
Sbjct: 180 VESTIINVTVEPPV-LLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGMKYKHYA 238

Query: 232 PRSQVRLRAIH---------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
           P +++ L             ++ +  +       +      +  + L     L E A NL
Sbjct: 239 PNTRLLLVENRNIFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNL 298

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F+  +  D            P  G+G AI NR  +A+ 
Sbjct: 299 FDSFRELDKLNVDLGIMIGFPERGIGFAIMNRARKASG 336


>gi|312899931|ref|ZP_07759249.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470]
 gi|311292927|gb|EFQ71483.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0470]
          Length = 340

 Score =  327 bits (839), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ KH+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAKHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|238651093|ref|YP_002916951.1| hypothetical protein RPR_07435 [Rickettsia peacockii str. Rustic]
 gi|238625191|gb|ACR47897.1| hypothetical protein RPR_07435 [Rickettsia peacockii str. Rustic]
          Length = 312

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 174/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +    D L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 62  EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETST ++ GML  HY+P+  VRL AI++  +E 
Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + F N  +       +SLNLS  G   EAA NL+ Y++I DD         IA S IP 
Sbjct: 240 GLNFSNSNL----TGRVSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|225570088|ref|ZP_03779113.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM
           15053]
 gi|225161558|gb|EEG74177.1| hypothetical protein CLOHYLEM_06184 [Clostridium hylemonae DSM
           15053]
          Length = 350

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 162/331 (48%), Gaps = 25/331 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + L  G  +A PTETVYGL  D+ +  A  ++Y  K RP+ NPLI H++++  ++
Sbjct: 18  IQEAGDILKRGGLVAFPTETVYGLGADALSEEAAAKIYAAKGRPSDNPLIVHITNMGDLE 77

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           K A  +   ++ +A  +WPGPLT++        +   +T  L T   R+P     +++I+
Sbjct: 78  KVAEKIPAEAVKVAGKYWPGPLTMIF--HKKDIVPYGTTGGLDTVAVRMPSHEIAREVID 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  +A PSAN SG+ S T  +H+    +   I +I+DGG  +IG+ESTI+++     +
Sbjct: 136 AGGGFIAAPSANTSGRPSPTTAQHV-KEDMDGRIEMIVDGGPVEIGVESTILDMTVTPPM 194

Query: 190 RILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQV--------- 236
            ILRPG +  E L   I  V +++ +   D T  P++PGM   HYAP +++         
Sbjct: 195 -ILRPGAVTEEMLTELIGAVAVDHTLITADSTEAPKAPGMKYRHYAPNAELVIIEGPASK 253

Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                 RL          +   G     +   +    ++         A  L+  ++  D
Sbjct: 254 VTEEINRLARARQKEGYKVGIIGTEETVSGYTSGDVKSIGTREDESTIAGRLYAVLREFD 313

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           D G + I   S    G+G AI NRL +AA  
Sbjct: 314 DDGVNYIYSESFATGGIGSAIMNRLLKAAGH 344


>gi|257416746|ref|ZP_05593740.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis AR01/DG]
 gi|257158574|gb|EEU88534.1| Sua5/YciO/YrdC/YwlC [Enterococcus faecalis ARO1/DG]
          Length = 340

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N TA++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNETAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  EI  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGEIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG--- 253
            E L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258

Query: 254 -----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
                           + ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|312877224|ref|ZP_07737193.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796033|gb|EFR12393.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 348

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/337 (33%), Positives = 158/337 (46%), Gaps = 27/337 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI HVS 
Sbjct: 11  IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFWAKGRPQDNPLIIHVSS 70

Query: 67  ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M++  A + D     L + FWPGPLT+VL       I    TA L T   R+P     
Sbjct: 71  KDMLEMCAEITDERVYMLIERFWPGPLTIVLP--KKDVIPENVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  KH++   +  ++ +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSGIPVAAPSANVSGKPSPTEAKHVI-EDLMGKVDVIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRSQVRLR 239
            EK V ILRPG +    LK  +  ++EY          + P+SPGM   HYAP +++ + 
Sbjct: 188 GEKAV-ILRPGAISYFALKEVLG-DIEYSKSVVEGLTGTVPRSPGMKYKHYAPDAKLIIV 245

Query: 240 AIHVNPREALI--RFGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFN 284
              ++ R   I      +  K     I+                L      KE   NLF+
Sbjct: 246 KGRIDKRIDKINEMKKKLEFKGYNVGILCFYETAHNFDSQYKLILGSMFDAKECGRNLFS 305

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            ++  +  G   I           +A+ NRL +AAA 
Sbjct: 306 ILRKFNQLGVDYILCEWGEFDLEFLALENRLYKAAAN 342


>gi|227873768|ref|ZP_03991997.1| Sua5/YciO/YrdC/YwlC family protein [Oribacterium sinus F0268]
 gi|227840384|gb|EEJ50785.1| Sua5/YciO/YrdC/YwlC family protein [Oribacterium sinus F0268]
          Length = 367

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 159/368 (43%), Gaps = 51/368 (13%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     + +A E L  G  +A PTETVYGL  +  +  A +++Y  K RP+ NPL
Sbjct: 1   MKT-KIFGKEGISEAAEILKGGGLVAFPTETVYGLGGNGLDKEAAKKIYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HVS I  V       P  +  L + FWPGPLTLVL    +  +   ST  L+T   R 
Sbjct: 60  ILHVSSIEEVYPLVKALPEKAKKLMEAFWPGPLTLVLP--KSDLVPKESTGGLETVALRS 117

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+A PSAN SG+ S T   H+    +   I  I++ G   IG+ES
Sbjct: 118 PENALTLSLIRACGFPIAGPSANLSGRPSPTEASHVF-EDLGGRIEGILEDGAVGIGVES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE-------YCVDETSTPQSPGMLKSHYA 231
           TIV++  E    +LRPG + IE L+  +  ++          + E   P++PGM   HYA
Sbjct: 177 TIVDL-SENCPTLLRPGAITIEDLEEVLGEKVAIDPTLLGKSMAEGFIPKAPGMKYRHYA 235

Query: 232 PRSQVRLRAIHV-------------------------------------NPREALIRFGN 254
           P++++ L   ++                                          L     
Sbjct: 236 PKAEMILFKKNLLSDQSQKVNEIPYGEEKKLIAKSILSYGAKELSDCPERKIWILCGEDT 295

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
             +   ++      L +  +      NLF  ++ AD+ G   I        G+G A+ NR
Sbjct: 296 ASLYEGDSRFTVKILGRREEPLSMTHNLFRLLRQADEEGVELILGECYSEEGVGFALMNR 355

Query: 315 LERAAAPR 322
           +++AA  R
Sbjct: 356 MKKAAGQR 363


>gi|257087539|ref|ZP_05581900.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6]
 gi|256995569|gb|EEU82871.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis D6]
 gi|315025304|gb|EFT37236.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX2137]
          Length = 340

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNKAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|312869583|ref|ZP_07729734.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus oris PB013-T2-3]
 gi|311094869|gb|EFQ53162.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus oris PB013-T2-3]
          Length = 354

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/333 (30%), Positives = 165/333 (49%), Gaps = 19/333 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I   N + +A   +  G  +A PTETVYGL  D+ N  A++ +Y  K RP+ NPLI HV
Sbjct: 16  KIYQLNQIDEAAAAIQRGELVAFPTETVYGLGADATNEPAVKNVYLAKGRPSDNPLIVHV 75

Query: 65  SDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           + ++MV+K+A+  P  +  L   FWPG LT++L +     +    T  L T  FR P   
Sbjct: 76  NSVAMVEKYAAEIPANARKLMDAFWPGSLTIILKIKKGA-LSKTVTGGLSTVAFRFPDNQ 134

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T  LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST+++
Sbjct: 135 PTLDLIGKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKITGILDDGPTRVGVESTVLD 193

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +     V ILRPG +  + ++  I       + V +  TP++PGM   HYAP +QV +  
Sbjct: 194 MSTATPV-ILRPGAVTKQDIEGVIGSIDLNHHQVGKNETPKAPGMKYKHYAPSAQVYIVN 252

Query: 241 IHVNPREALIRFGNVP-----------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
              +  +        P           ++ +   + ++  S    +++A+  LF+ ++  
Sbjct: 253 EGTDWAKVAKWVAQQPFDVGVMAEERILQQLTLPMNAVQFSLGTGVEDASARLFDGLRGF 312

Query: 290 DDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
           DD     +I   +     LG A  NRL ++A  
Sbjct: 313 DDQPNVKAIVTEAFTAKNLGRAYMNRLNKSAGG 345


>gi|15893238|ref|NP_360952.1| hypothetical protein RC1315 [Rickettsia conorii str. Malish 7]
 gi|15620456|gb|AAL03853.1| unknown [Rickettsia conorii str. Malish 7]
          Length = 312

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 173/315 (54%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +    D L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 62  EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETST ++ GML  HY+P+  VRL AI++  +E 
Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + F N  +        SLNLS  G   EAA NL+ Y++I DD         IA S IP 
Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|34581094|ref|ZP_00142574.1| hypothetical protein [Rickettsia sibirica 246]
 gi|229587215|ref|YP_002845716.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein
           [Rickettsia africae ESF-5]
 gi|28262479|gb|EAA25983.1| unknown [Rickettsia sibirica 246]
 gi|228022265|gb|ACP53973.1| Sua5/YciO/YrdC/YwlC family putative translation factor protein
           [Rickettsia africae ESF-5]
          Length = 312

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 124/315 (39%), Positives = 174/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +    D L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI  
Sbjct: 62  EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETST ++ GML  HY+P+  VRL AI++  +E 
Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSTIKASGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + F N  +        SLNLS  G   EAA NL+ Y++I DD         IA S IP 
Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G+AIN+RL+RAA
Sbjct: 296 VNIGVAINDRLKRAA 310


>gi|154249397|ref|YP_001410222.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153333|gb|ABS60565.1| Sua5/YciO/YrdC/YwlC family protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 331

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 98/328 (29%), Positives = 160/328 (48%), Gaps = 11/328 (3%)

Query: 2   QIMSITD--SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +I+ + D  +  +  ACE L +G  +A PTETVYGL   + NP A+++++++K RPA NP
Sbjct: 8   KIIKVDDLYNPDISYACEVLKSGGLVAFPTETVYGLGATATNPEAVKKIFQVKGRPADNP 67

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI HVS +  ++  A +    + + K   PGP+T VL      +I    TA L+T   R+
Sbjct: 68  LIVHVSSVDEIENIAYLSEKYIDIIKKVTPGPITFVL--KKKENIPSEVTAGLETVGVRI 125

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P     + +     P+A PSANRSG+ S T+   ++   +   +  IID G    G+EST
Sbjct: 126 PAHPVAQKLINCSGPIAAPSANRSGKPSPTDANAVI-EDLNGLVECIIDAGECAFGIEST 184

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++  +  V +LRPG + +E L +   V   Y + E   P +PGM   HYAP   + L 
Sbjct: 185 IVDLTKDFPV-VLRPGPITLEELTQLFGVVEFYQLKEGEKPLAPGMKYRHYAPEKHLELV 243

Query: 240 AIHVNPREALIRFGNVPIKNIENAII-----SLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
                          +  K  +  +I        + +  K    A NL+   +  D +  
Sbjct: 244 DQSALLEYQNTDVLILCTKETKERLIPNAKNVYIIGELSKPYTIAQNLYRSFRDIDKTNY 303

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPR 322
                  +P +G+  +I NR+++A + +
Sbjct: 304 KYAVIEKLPEYGIFFSIMNRIKKAVSKK 331


>gi|167747415|ref|ZP_02419542.1| hypothetical protein ANACAC_02135 [Anaerostipes caccae DSM 14662]
 gi|167652777|gb|EDR96906.1| hypothetical protein ANACAC_02135 [Anaerostipes caccae DSM 14662]
          Length = 351

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/335 (30%), Positives = 163/335 (48%), Gaps = 25/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  A+R+A   L  G  +A PTETVYGL        A  R+YE K RP+ NPLI H+  +
Sbjct: 16  NKEAIREAAGLLREGKLVAFPTETVYGLGGSGWMEEAASRIYEAKGRPSDNPLILHIGSM 75

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125
            M+ + AS  P  +      FWPGPLT++L    +  +    T  L +   R+P      
Sbjct: 76  EMIDEIASCVPGPAKKAMDAFWPGPLTVILP--KSDKVPYRVTGGLDSVAVRMPSHPAAL 133

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+   G P+A PSAN SG+ S T  +H++   +  +IP+++DGG  ++G+ESTIV+   
Sbjct: 134 ALLREAGVPVAAPSANTSGRPSPTKAEHVV-EDLDGKIPMVLDGGKVEVGVESTIVDFTG 192

Query: 186 EKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           E  V ILRPG +  + L++A+S E+      V E + P++PGM   HYAP++Q+ L    
Sbjct: 193 EVPV-ILRPGKITKDELEKALSTEVLMSTLSVKEDTVPRAPGMKYKHYAPKAQLVLILGE 251

Query: 243 VNPREA-------------LIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYM 286
              + A              ++ G +  +      +A   +++     ++    NL++ +
Sbjct: 252 DREKVAEEITKRVRDCREQGMKTGVIATEETMGGYDADEVISVGSRSHMETVTANLYDVL 311

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  D      I            A+ NRL +AA  
Sbjct: 312 REFDHRDVDVIFSEGFEGEEYEEAVMNRLVKAAGH 346


>gi|161507268|ref|YP_001577222.1| Sua5 family translation factor [Lactobacillus helveticus DPC 4571]
 gi|160348257|gb|ABX26931.1| putative translation factor, SUA5 family [Lactobacillus helveticus
           DPC 4571]
          Length = 333

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 162/334 (48%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + + +A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++++A  V   +  L K FWPGPLTL+L +   T +    T  L T  FR 
Sbjct: 60  IVTVSDEKMMERYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235
           TI+++  +  + +LRPG +  E L   +  ++        +   P++PGM   HYAP   
Sbjct: 178 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 236

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         I  N +  ++  G+V  +         +L K   L +A  NLF  ++ 
Sbjct: 237 VVVVDDPADFGKIDFNDKTGVVALGSVLDQINLPEENKFDLGK--NLIDADHNLFGALRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 295 FDDKDDIETIYVQGFDEGEESLAYMNRLNKAAGG 328


>gi|84500239|ref|ZP_00998505.1| Putative translation factor [Oceanicola batsensis HTCC2597]
 gi|84392173|gb|EAQ04441.1| Putative translation factor [Oceanicola batsensis HTCC2597]
          Length = 314

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 133/324 (41%), Positives = 178/324 (54%), Gaps = 13/324 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++  TD + L +A   L +G  +A+PTETVYGLA D+ +  A+  +Y  K RP+ NPLI
Sbjct: 3   ELLKPTD-DGLDRAAALLRSGGLVAMPTETVYGLAGDAADDRAVAAIYAAKGRPSFNPLI 61

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV+D  +V +   V   +  L + FWPGPLTLVL L     + PL TA L T   R+P 
Sbjct: 62  VHVADPDLVGRLVRVSAEAAALIEAFWPGPLTLVLPLREAAPVSPLVTAGLPTLAVRMPA 121

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L+  +G  LA PSAN SG++S     H++ + +   I  ++DGG   +GLESTI
Sbjct: 122 HPVARSLLTAFGGGLAAPSANPSGRVSPVTAAHVM-AGLAGRIDAVLDGGECGVGLESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V    +  V ILR GG+  E L   +  E       T    +PG L SHYAP  QVR+  
Sbjct: 181 VGFDGDAPV-ILRDGGVTAEDLASVMG-ETPRRRGATGRIDAPGQLASHYAPSGQVRIGV 238

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
               P E  + FG V           LNLS+TG L EAA NLF +    D  G+  IA +
Sbjct: 239 TAPEPGETYLGFGPVTCD--------LNLSETGDLAEAAANLFRHFHTLDAQGSERIAVA 290

Query: 301 SIPNHGLGIAINNRLERAAAPRNQ 324
            +P+HGLG AIN+RL RAAAPR  
Sbjct: 291 PVPDHGLGRAINDRLRRAAAPRQA 314


>gi|51474016|ref|YP_067773.1| hypothetical protein RT0837 [Rickettsia typhi str. Wilmington]
 gi|51460328|gb|AAU04291.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington]
          Length = 313

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 116/315 (36%), Positives = 172/315 (54%), Gaps = 12/315 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RP +NPLI HV+ I   K
Sbjct: 2   LNKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKNRPVINPLIVHVASIVQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
                + L+  +A+ FWPGPL++V+ L    +I P  TA L T   R+P       LI  
Sbjct: 62  AIGEFNKLAEKIARKFWPGPLSIVVPLKDNVNIAPSVTAGLNTIALRIPSYSIALALIRQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
              P+A PSAN S  IS TN +H+           I+   I   + GLESTI++      
Sbjct: 122 SVVPIAAPSANPSNYISPTNAEHVTKHFKDNREIFILSPEIYQCEYGLESTIID-TTTVI 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + V++    +  S  ++PGML+ HY+P   +RL AI++N +E 
Sbjct: 181 PTILREGFITSEILEELLGVKILKASEINSIVKAPGMLQKHYSPNVHIRLNAINLNDKEI 240

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + FGN  +        +LNLS  G   EAA NL++Y++I DD    +  + IA + +P 
Sbjct: 241 GLNFGNSNL----TGKFALNLSTEGNFIEAAANLYSYLRILDDYAALNDINCIAVAPVPL 296

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 297 TNIGAAINDRLKRAA 311


>gi|295109526|emb|CBL23479.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus obeum A2-162]
          Length = 354

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/346 (29%), Positives = 173/346 (50%), Gaps = 29/346 (8%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI+++T    D +A+++A + L AG  +A PTETVYGL  ++ +P A  ++Y  K RP+ 
Sbjct: 4   QIVAMTSENLDMDAIKRAGDILKAGGLVAFPTETVYGLGGNALDPQASMKIYAAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+++   + +  +  P     LA+ +WPGPLT++L       +   +T  L +  
Sbjct: 64  NPLIVHIAEADQLAEITTEIPQGAKILAEKYWPGPLTMILPKADI--VPKETTGGLDSVA 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P     ++LI+  G  +A PSAN SG+ S T  +H+    +   I +IIDGG   IG
Sbjct: 122 VRFPSDRIAQELIKAAGGFVAAPSANTSGRPSPTMAEHV-EEDLGDAIDMIIDGGQVGIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC---VDETSTPQSPGMLKSHYA 231
           LESTIV+   +  V +LRPG + ++ LK  +  V ++      D +  P++PGM   HYA
Sbjct: 181 LESTIVDFTEDVPV-VLRPGYISLQMLKETLGDVRMDRGLLITDNSVHPKAPGMKYRHYA 239

Query: 232 PRSQV------------RLRAIHVNPREALIRFGNVPIKNIENAII---SLNLSKTGKLK 276
           P++ +             +  +     +  ++ G +     ++        ++    + +
Sbjct: 240 PKADLSIVEGTEAQVIDCINRLSAEAEKKGLKVGVIATNETKDRYAHADVFSIGSREEEE 299

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             A +L+  ++  DD     I   +     +G AI NRL +AA  +
Sbjct: 300 TIAHHLYEVLRSFDDDRVDLIYSEAFYTPRMGQAIMNRLLKAAGHK 345


>gi|257421858|ref|ZP_05598848.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|257163682|gb|EEU93642.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|315155437|gb|EFT99453.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0043]
          Length = 340

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 173/315 (54%), Gaps = 19/315 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + +         T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPRDTFSKTVTGGLETVAFRMPDNQATLTLIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGSTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESVIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI-----ENAIISLN-----LSKTG--KLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
            + I     +     L+     +   G   ++ A   LF  ++  D+ GA++I       
Sbjct: 259 QEKIGLFLSDEQAAQLDTENTFVYSYGAETVENATKELFAGLRALDEQGATTIFAQGFAE 318

Query: 305 HGLGIAINNRLERAA 319
            GLG A  NRL+++A
Sbjct: 319 TGLGTAYMNRLKKSA 333


>gi|126740572|ref|ZP_01756259.1| Sua5/YciO/YrdC family protein [Roseobacter sp. SK209-2-6]
 gi|126718373|gb|EBA15088.1| Sua5/YciO/YrdC family protein [Roseobacter sp. SK209-2-6]
          Length = 324

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 132/317 (41%), Positives = 176/317 (55%), Gaps = 9/317 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A + L AG  ++  TETVYGL  D+R   A+  +Y  K RP+ NPLI H +  
Sbjct: 16  DPAGLTRAAQLLQAGELVSFATETVYGLGADARQGEAVAAIYAAKGRPSFNPLIVHAASA 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
              +++   +  +  LA+ FWPGPLTLVL L     I  L TA L+T   RVP     ++
Sbjct: 76  EAAQRYVLWNGWAEVLAQAFWPGPLTLVLPLRPKHGISGLVTAGLETLAVRVPAQPSAQR 135

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++ +  P+A PSAN SG+IS T   H+  + +   I  I+D G   +GLESTIV +  E
Sbjct: 136 LLQIFDGPVAAPSANPSGRISPTLASHVF-AGLNGRIAAIVDDGACGVGLESTIVGLAGE 194

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             + +LRPGGL  E ++ A+   L    D      +PG L SHYAP  QVRL A      
Sbjct: 195 API-LLRPGGLAAEEIEEALGQPL-RQRDVQDPLTAPGQLLSHYAPNEQVRLNAAAARNG 252

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E  + FG       E+    LNLS  GKL EAA +LF+Y+   D  G   IA + IP+ G
Sbjct: 253 EVFLGFGAHQGSGPED----LNLSPDGKLTEAAAHLFDYLHQLDGLG-RPIAVAPIPDEG 307

Query: 307 LGIAINNRLERAAAPRN 323
           LG AIN+RL RAAAPR+
Sbjct: 308 LGAAINDRLARAAAPRD 324


>gi|167760279|ref|ZP_02432406.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704]
 gi|167662162|gb|EDS06292.1| hypothetical protein CLOSCI_02652 [Clostridium scindens ATCC 35704]
          Length = 352

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 163/345 (47%), Gaps = 30/345 (8%)

Query: 3   IMSITDSN-----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           I+   D N      +R+A   L  G  +A PTETVYGL  D+ N  A +++Y  K RP+ 
Sbjct: 7   IIEKIDKNKINTYIIREAGRILREGGLVAFPTETVYGLGADALNEHAAQKIYAAKGRPSD 66

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++++  + K  S  P +  +    +WPGPLT++ D   +  +   +T  L T  
Sbjct: 67  NPLIIHITNMDDLAKITSFIPEAAKVIADKYWPGPLTMIFD--KSGIVPYGTTGGLDTVA 124

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     +++I+  G  +A PSAN SG+ S T   H+    +  +I +IIDGG   IG
Sbjct: 125 VRMPSHEIAREVIDAGGGYIAAPSANTSGRPSPTTALHV-EEDMTGKIDMIIDGGSVDIG 183

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYA 231
           +ESTI+++       ILRPG +  E L   I  V ++  +   D   TP++PGM   HYA
Sbjct: 184 VESTILDMTV-VPPMILRPGAITREMLTELIGEVSVDKTLITPDSKKTPKAPGMKYRHYA 242

Query: 232 PRSQVRLRAIHVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLK 276
           P++++ +    +    A I                 G         A    ++       
Sbjct: 243 PKAELTIVEGEIKEVIAKINSLAAEKLEEGLKVGIIGTEETVGCYPAGDVKSIGTREDEA 302

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A +L+  ++  D+ G   I   +    G+G AI NRL +AA  
Sbjct: 303 TIAGSLYGILREFDNDGVDYIYSEAFATGGIGSAIMNRLLKAAGH 347


>gi|315148530|gb|EFT92546.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4244]
          Length = 340

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 107/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + +         T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|315150061|gb|EFT94077.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0012]
          Length = 340

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 106/317 (33%), Positives = 174/317 (54%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + +         T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|295113544|emb|CBL32181.1| translation factor SUA5 [Enterococcus sp. 7L76]
          Length = 340

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG--- 253
            E L+  IS V+++ + + E + P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIISQVKIDTHLISENAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQATEQ 258

Query: 254 -----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
                           + ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AEIGLGTAYMNRLKKSA 333


>gi|323466865|gb|ADX70552.1| Sua5 family translation factor [Lactobacillus helveticus H10]
          Length = 339

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + + +A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 7   MET-KIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 65

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++++A  V   +  L K FWPGPLTL+L +   T +    T  L T  FR 
Sbjct: 66  IVTVSDEKMMERYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 124

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLES
Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDGGPTRVGLES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235
           TI+++  +  + +LRPG +  E L   +  ++        +   P++PGM   HYAP   
Sbjct: 184 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 242

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         I  N +  +   G+V  +         +L K   L +A  NLF  ++ 
Sbjct: 243 VVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEENKFDLGK--NLIDADHNLFGALRY 300

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 301 FDDKDDIETIYVQGFDEGEESLAYMNRLNKAAGG 334


>gi|328468717|gb|EGF39699.1| Sua5 family translation factor [Lactobacillus helveticus MTCC 5463]
          Length = 333

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + + +A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++++A  V   +  L K FWPGPLTL+L +   T +    T  L T  FR 
Sbjct: 60  IVTVSDEKMMERYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235
           TI+++  +  + +LRPG +  E L   +  ++        +   P++PGM   HYAP   
Sbjct: 178 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 236

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         I  N +  +   G+V  +         +L K   L +A  NLF  ++ 
Sbjct: 237 VVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEENKFDLGK--NLIDADHNLFGALRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 295 FDDKDDIETIYVQGFDEGEESLAYMNRLNKAAGG 328


>gi|238917860|ref|YP_002931377.1| putative translation factor [Eubacterium eligens ATCC 27750]
 gi|238873220|gb|ACR72930.1| putative translation factor [Eubacterium eligens ATCC 27750]
          Length = 351

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 26/337 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D     +A + L  G  +A PTETVYGL  D+ +  A  ++Y  K RP+ NPLI H++D+
Sbjct: 14  DKKIYEQAGQILREGGLVAFPTETVYGLGADALDAKASAKIYAAKGRPSDNPLIVHIADV 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + +   A  V   +L LA+ FWPGPLT++L       +    T  L T   R+P      
Sbjct: 74  NALYDLAKEVPDKALVLAEKFWPGPLTMIL--KKKDKVPDSITGGLGTVAIRMPSHPVAA 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI + G  +A PSAN SG+ S T  +H+++  +   I +II      IG+ESTI+++  
Sbjct: 132 ELIRSSGVYIAAPSANTSGKPSPTRAEHVIND-LSGRIDMIIQDDTVDIGVESTIIDL-S 189

Query: 186 EKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           E+   ILRPG +     + AI        +   + E   P++PGM   HYAP + V +  
Sbjct: 190 EEVPTILRPGYITQAMFEEAIGKTIIDPAIMGSLKEGVVPKAPGMKYKHYAPNADVTIVE 249

Query: 241 IHVNPREALI------------RFGNVPIKNIENAIISLNLSKTG---KLKEAAFNLFNY 285
                    I            R   +     ++  I  ++   G        A NL+  
Sbjct: 250 GQHEKVVQYINAQIAEKEAEGHRCAVMATDETKDKYICSDIVSAGHKDDELSVARNLYAI 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           ++  D      +   S     +G A+ NRL +AA  +
Sbjct: 310 LRDFDKQNIEFVYSESFETKNVGQAVMNRLIKAAGHK 346


>gi|317471145|ref|ZP_07930516.1| Sua5/YciO/YrdC/YwlC family protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901360|gb|EFV23303.1| Sua5/YciO/YrdC/YwlC family protein [Anaerostipes sp. 3_2_56FAA]
          Length = 351

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 101/335 (30%), Positives = 162/335 (48%), Gaps = 25/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  A+R+A   L  G  +A PTETVYGL        A  R+YE K RP+ NPLI H+  +
Sbjct: 16  NKEAIREAAGLLREGKLVAFPTETVYGLGGSGWMEEAASRIYEAKGRPSDNPLILHIGSM 75

Query: 68  SMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125
            M+ +  S  P  +      FWPGPLT++L    +  +    T  L +   R+P      
Sbjct: 76  EMIDEITSCVPGPAKKAMDAFWPGPLTVILP--KSDKVPYRVTGGLDSVAVRMPSHPAAL 133

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+   G P+A PSAN SG+ S T  +H++   +  +IP+++DGG  ++G+ESTIV+   
Sbjct: 134 ALLREAGVPVAAPSANTSGRPSPTKAEHVV-EDLDGKIPMVLDGGKVEVGVESTIVDFTG 192

Query: 186 EKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           E  V ILRPG +  + L++A+S E+      V E + P++PGM   HYAP++Q+ L    
Sbjct: 193 EVPV-ILRPGKITKDELEKALSTEVLMSTLSVKEDTVPRAPGMKYKHYAPKAQLVLILGE 251

Query: 243 VNPREA-------------LIRFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYM 286
              + A              ++ G +  +      +A   +++     ++    NL++ +
Sbjct: 252 DREKVAEEITKRVRDCRKQCMKTGVIATEETMDRYDADEVISVGSRSHMETVTANLYDVL 311

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           +  D      I            A+ NRL +AA  
Sbjct: 312 REFDHRDVDVIFSEGFEGEEYEEAVMNRLVKAAGH 346


>gi|157826525|ref|YP_001495589.1| putative translation factor protein [Rickettsia bellii OSU 85-389]
 gi|157801829|gb|ABV78552.1| Putative translation factor protein [Rickettsia bellii OSU 85-389]
          Length = 312

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 115/315 (36%), Positives = 174/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HVS I   K
Sbjct: 2   IKQAVQFITSGKVVVFPTETVYGIGADATNQEACLKIFQFKNRPAVNPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + ++  +A+ FW GPL++V+ L    ++    TA LKT   R+P      +LI+ 
Sbjct: 62  EIGEFNYIAEKIAEKFWSGPLSIVVPLKENANVATAVTAGLKTIAIRIPSHPLALELIKQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS T + H+       E   I+      SK GLESTIV+      
Sbjct: 122 SGKPIAAPSANPSNYISPTRLDHVTRHFKENEEIFILTDKDYQSKYGLESTIVD-TTADI 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + +++     +    ++PGML+ HY+P   +RL A ++N +E 
Sbjct: 181 PTILREGFITAEVLETVLDIKINKA-SKNINIKAPGMLEKHYSPTVSIRLNATNLNDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + FG+  +K       SLNLS  G L EAA NL+ Y+++ DD         IA + IP 
Sbjct: 240 GLNFGDSNLKGEY----SLNLSSKGDLTEAAANLYAYLRLLDDYAAAHNIEHIAVAPIPT 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 INIGAAINDRLKRAA 310


>gi|313123399|ref|YP_004033658.1| translation factor (sua5 family) [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279962|gb|ADQ60681.1| Putative translation factor (Sua5 family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 331

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     L +A   L  G  +A PTETVYGL   +    +++++Y  K RP+ NPL
Sbjct: 1   MET-KIFKREQLDEAVSLLRKGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  V+D +M++ +A  V   +  L K FWPGPLT++L L     +   +T  L T  FR 
Sbjct: 60  IVTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESATGGLPTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  I+DGG +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++       +LRPG +  E + + +  E+      V +   P++PGM   HYAP +Q
Sbjct: 178 TIVDLSVN-PAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQ 236

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         + ++    ++   ++            NL K   L EA  NLF  ++ 
Sbjct: 237 VYVVDQAETFAKLDLDVSCGVMATSDLLENLPVPEENKFNLGK--NLTEADHNLFAGLRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     SI           +A  NRL +AA  
Sbjct: 295 FDDRPEIKSIYVEGFDQGEESLAYMNRLNKAAGG 328


>gi|91206173|ref|YP_538528.1| putative translation factor protein [Rickettsia bellii RML369-C]
 gi|91069717|gb|ABE05439.1| Putative translation factor protein [Rickettsia bellii RML369-C]
          Length = 312

 Score =  325 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 115/315 (36%), Positives = 174/315 (55%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A +F+ +G  +  PTETVYG+  D+ N  A  ++++ K RPA+NPLI HVS I   K
Sbjct: 2   IKQAVQFITSGKVVVFPTETVYGIGADATNQEACLKIFQFKNRPAVNPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +    + ++  +A+ FW GPL++V+ L    ++    TA LKT   R+P      +LI+ 
Sbjct: 62  EIGDFNYIAEKIAEKFWSGPLSIVVPLKENANVATAVTAGLKTIAIRIPSHPLALELIKQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS T + H+       E   I+      SK GLESTIV+      
Sbjct: 122 SGKPIAAPSANPSNYISPTRLDHVTRHFKENEEIFILTDKDYQSKYGLESTIVD-TTADI 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L+  + +++     +    ++PGML+ HY+P   +RL A ++N +E 
Sbjct: 181 PTILREGFITAEVLETVLDIKINKA-SKNINIKAPGMLEKHYSPTVSIRLNATNLNDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + FG+  +K       SLNLS  G L EAA NL+ Y+++ DD         IA + IP 
Sbjct: 240 GLNFGDSNLKGEY----SLNLSSKGDLTEAAANLYAYLRLLDDYAAAHNIEHIAVAPIPT 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 INIGAAINDRLKRAA 310


>gi|300812486|ref|ZP_07092912.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496547|gb|EFK31643.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|325684406|gb|EGD26574.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 331

 Score =  325 bits (834), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I     L +A   L  G  +A PTETVYGL   +    +++++Y  K RP+ NPL
Sbjct: 1   MET-KIFKREQLDEAVSLLREGELVAFPTETVYGLGALATRDDSVKKVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  V+D +M++ +A  V   +  L K FWPGPLT++L L     +   +T  L T  FR 
Sbjct: 60  IVTVADEAMMRPYAKEVPERAEKLIKHFWPGPLTILL-LAKEGALPESATGGLPTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  I+DGG +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAQHVY-HDLKGKIAGIVDGGETEVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TIV++       +LRPG +  E + + +  E+      V +   P++PGM   HYAP +Q
Sbjct: 178 TIVDLSVN-PAVVLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPSAQ 236

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         + ++    ++   ++            NL K   L EA  NLF  ++ 
Sbjct: 237 VYVVDQAETFAKLDLDVSCGVMATSDLLENLPVPEENKFNLGK--NLTEADHNLFAGLRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     SI           +A  NRL +AA  
Sbjct: 295 FDDRPEIKSIYVEGFDQGEESLAYMNRLNKAAGG 328


>gi|227519762|ref|ZP_03949811.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104]
 gi|227072850|gb|EEI10813.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0104]
          Length = 340

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 108/317 (34%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + +         T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPRDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPRVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  +K A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VKNATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|332687007|ref|YP_004456781.1| YrdC/Sua5 family protein [Melissococcus plutonius ATCC 35311]
 gi|332371016|dbj|BAK21972.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Melissococcus plutonius ATCC
           35311]
          Length = 344

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 109/342 (31%), Positives = 174/342 (50%), Gaps = 18/342 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   +     L  A +F+  G  IA PTETVYGL  ++ +  A++ +YE K RP+ NPL
Sbjct: 1   MKTTQLFLEQELPIAAKFVKQGELIAFPTETVYGLGANALDEIAVKEVYEAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +KK+ S  P ++  LAK FWPGPLT++ ++   T    + T  L TA FR+
Sbjct: 61  IIHVETVEQIKKYVSNFPFIAEKLAKHFWPGPLTMIFNIKPGT-FPEVVTGGLTTAAFRI 119

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T +LI   G PL  PSAN SG+ S T  +H+    +  +I  ++DGG ++IG+ES
Sbjct: 120 PNNRLTLELIHQAGVPLVGPSANTSGKPSPTIAEHVY-HDLQGKIAGVLDGGATQIGIES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           T++++  E    ILRPG +  + LK  I      ++ ++E   P++PGM   HY+P + V
Sbjct: 179 TVLDLTTEVP-TILRPGLITKQELKVIIGKVAVDQHLLNEKEQPKAPGMKYKHYSPDTAV 237

Query: 237 RLRAIHVNPREALI----------RFGNVPIKNIENAIISLNLSKTGKLK-EAAFNLFNY 285
            + ++  +  +A+            F +  I +   + I+   S        AA  LF  
Sbjct: 238 WIISMPADWEKAIHLAKERRLKIGLFADEKIVDTYRSQITATFSFGEDTAINAAKYLFAG 297

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQR 327
           ++  D      I         + +A  NRL++AA  +  S +
Sbjct: 298 LRELDQMAVDVIFAQGFAERSMALAYMNRLKKAAGQKVFSNQ 339


>gi|312127871|ref|YP_003992745.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777890|gb|ADQ07376.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 348

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 159/336 (47%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI HVS 
Sbjct: 11  IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHVSS 70

Query: 67  ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M++  A + D     L + FWPGPLT+VL       I    TA L T   R+P     
Sbjct: 71  KEMLEMCAEITDERVYMLIERFWPGPLTIVLP--KKNVIADNVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  KH++   +  ++ +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMGKVDIIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240
            EK V ILRPG +    LK  +  +E    V E    + P+SPGM   HYAP +++ +  
Sbjct: 188 GEKAV-ILRPGAISYFALKEVLGNIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246

Query: 241 IHVNPREALI--RFGNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNY 285
             ++ R   I      +  K     I+                L      KE   NLF+ 
Sbjct: 247 GRIDKRIDKINEMKKKLEFKGHRVGILCFYETVHNFDSQYKLILGSMFDAKECERNLFSI 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  +  G   I       +   +A+ NRL +AAA 
Sbjct: 307 LRKFNQLGVDYILCEWGEFNLEFLALENRLYKAAAN 342


>gi|312622677|ref|YP_004024290.1| sua5/ycio/yrdc/ywlc family protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203144|gb|ADQ46471.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 348

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 111/336 (33%), Positives = 160/336 (47%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S 
Sbjct: 11  IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHISS 70

Query: 67  ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M++  A + D     L ++FWPGPLT+VL       I    TA L T   R+P     
Sbjct: 71  KDMLEMCAEITDDRVYMLIEMFWPGPLTIVLP--KKNVIAENVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  KH++   +  +I +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMGKIDIIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240
            E+ + ILRPG +    LK  +  +E    V E    + P+SPGM   HYAP +++ +  
Sbjct: 188 GERPL-ILRPGAISYFALKEVLGDIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246

Query: 241 IHVNPREALIRF--GNVPIKNIENAIISLN-------------LSKTGKLKEAAFNLFNY 285
             ++ R   I      +  K  +  I+                L      KE   NLF+ 
Sbjct: 247 GRIDKRIDKINEIKKRLEFKGHKVGILCFYETAHNFESQYKLILGSMFDAKECGRNLFSI 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  +  G   I           +A+ NRL +AAA 
Sbjct: 307 LRKFNQLGVDYILCEWGNFDLEFLALENRLYKAAAN 342


>gi|290969301|ref|ZP_06560826.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780807|gb|EFD93410.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera genomosp. type_1
           str. 28L]
          Length = 348

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 107/347 (30%), Positives = 156/347 (44%), Gaps = 26/347 (7%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++ ITD       LR+A   +  G  +  PTETVYGL  +  + TA RR++E K RP+ 
Sbjct: 4   ELLKITDIEQQQELLRQAGACIRQGGLVVFPTETVYGLGANGLDETACRRIFEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI  V+D    ++ +  + PL+  L   FWPGPLTLVL   S   +  ++T  L T  
Sbjct: 64  NPLILTVADRQGAEQISDRISPLAEKLMARFWPGPLTLVLPRRSC--VPDVATGGLDTVA 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P     +  ++    P+A PSAN S + S T     L   +   + +IIDGG   IG
Sbjct: 122 VRCPDHDICRAFLQYAQVPVAGPSANLSTRPSPTTAAEAL-HDMDGRVQMIIDGGACHIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPR 233
           +ESTIV      +V ILRPGG+  E L    +  +   + V     P++PGM   HYAP 
Sbjct: 181 VESTIVECTAADEVTILRPGGITPEMLAEVAAKVVLDTHLVSGKGVPKAPGMKYRHYAPE 240

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIEN---------------AIISLNLSKTGKLKEA 278
           + V+            ++      K                   A  +      G     
Sbjct: 241 APVQAFVGSEQAVIEAVQMAYTEAKAAGKTVGFLLSREVATQVGAPHTFIWGHHGDAAAL 300

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           A  L+  +   D      I    +P  GLG+A+ NRL++AA    Q+
Sbjct: 301 ANKLYTGLLFFDKERVDLILAEGVPAVGLGLAVMNRLKKAAGGHVQA 347


>gi|116491553|ref|YP_811097.1| translation factor SUA5 [Oenococcus oeni PSU-1]
 gi|290891158|ref|ZP_06554220.1| hypothetical protein AWRIB429_1610 [Oenococcus oeni AWRIB429]
 gi|116092278|gb|ABJ57432.1| translation factor SUA5 [Oenococcus oeni PSU-1]
 gi|290479122|gb|EFD87784.1| hypothetical protein AWRIB429_1610 [Oenococcus oeni AWRIB429]
          Length = 337

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 106/336 (31%), Positives = 169/336 (50%), Gaps = 15/336 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++  T   A+ +A   + +G  +A PTETVYG+  D+    A+ +++  KKRP  NPL
Sbjct: 1   MTLVLKTSEKAIAEAANIMASGGVVAFPTETVYGIGADATKRDAVEKVFAAKKRPHDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I  VS+  M  + A +D  +  L + FWPG LT++L L+    +    TA L TA FR P
Sbjct: 61  IVTVSNAEMASRFAKLDWRAEKLIENFWPGSLTMILPLIDQDILPDNVTAGLLTAAFRNP 120

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T+ LI    +P+  PSAN S + S T  +H+L   +   I  +ID G ++IG+EST
Sbjct: 121 KNDVTRHLITLLNNPIVGPSANLSTKPSPTTAEHVL-HDMDGRIDAVIDDGPTEIGVEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRS 234
           IV++   K+  ILRPG +  + +   +  ++        +     P++PGM   HYAP  
Sbjct: 180 IVDLSV-KQATILRPGAVTADQVSSVLGEKVIDPTGPISLAANIAPKAPGMKYRHYAPSK 238

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT--GKLKEAA----FNLFNYMKI 288
            V +               N  +  +E+++  L L +     L E A      LF+ ++ 
Sbjct: 239 AVVIFNQTDLKDLKQQLKKNDAVVALEDSLNQLKLDRRHSWSLGETADSATEELFSALRF 298

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            DD     +I   S+P+ G+G A  NRLE++A  ++
Sbjct: 299 FDDQKDIQTIYVESLPSEGIGEAYMNRLEKSAGGQH 334


>gi|157829148|ref|YP_001495390.1| hypothetical protein A1G_07205 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801629|gb|ABV76882.1| hypothetical protein A1G_07205 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 311

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 123/315 (39%), Positives = 173/315 (54%), Gaps = 13/315 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA +F+ +G  +  PTETVYG+  D+ N  A  ++++ K+RPA+NPLI HVS I   K
Sbjct: 2   INKAVQFIKSGKVVVFPTETVYGIGADATNNEACLKIFQFKERPAINPLIVHVSSIEQAK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +    D L+  +A+ FW GPL++V+ L    +I P  TA L T   R+P      +LI+ 
Sbjct: 62  EIGEFDDLATKIAEKFWSGPLSIVVPLKENANIAPSVTAGLNTIALRIPSYPVALELIKQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TN +H+       +   I+   I  SK GLESTI++      
Sbjct: 122 SGIPIAAPSANPSNYISPTNAEHVTKHFKDNQEIFILAPEIYQSKYGLESTIID-TTTVT 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
             ILR G +  E L   + +E+     ETS  ++ GML  HY+P+  VRL AI++  +E 
Sbjct: 181 PTILREGFITAEILGEILGIEV-LKASETSIIKASGMLAKHYSPKVPVRLNAINLEDKEI 239

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPN 304
            + F N  +        SLNLS  G   EAA NL+ Y++I DD         IA S IP 
Sbjct: 240 GLNFSNSNL----TGRFSLNLSVKGDFIEAAANLYAYLRILDDYAASHDVRGIAVSPIPQ 295

Query: 305 HGLGIAINNRLERAA 319
             +G AIN+RL+RAA
Sbjct: 296 VNIGAAINDRLKRAA 310


>gi|296449033|ref|ZP_06890823.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08]
 gi|296879856|ref|ZP_06903829.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07]
 gi|296262126|gb|EFH08931.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP08]
 gi|296429145|gb|EFH15019.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium difficile NAP07]
          Length = 353

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 22/331 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++   + L  G  +  PTETVYGL  ++ +  A++++YE K RP+ NPLI H+ +   
Sbjct: 23  EEIKIQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEE 82

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           V   A  +   +  + +  WPGP+T++L+      I   ++  L T   R+P     + +
Sbjct: 83  VYDLAKDISDKAKLVIEKLWPGPITIILN--KKDIIPYKTSGGLDTVAIRMPSNIIARAI 140

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN SG+ S T  KH+    +   +  I+ GG S  GLEST++++  E+
Sbjct: 141 IKEAGIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDLT-EE 198

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHV 243
              ILRPG +  E L+  +  V+L+  + +       ++PGM   HY+P + V + +   
Sbjct: 199 TPMILRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKR 258

Query: 244 N------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                         RE  ++ G +             +     L+E A NLF+ +   D 
Sbjct: 259 ENVAIKINDMIKSNREKGLKTGVMCTSKNREFYDGEVIDLGNSLEEVASNLFDALIEMDK 318

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                I     P  G+G AI NRL ++A  +
Sbjct: 319 KSVDVIYSEEFPKTGVGQAIMNRLLKSAGYK 349


>gi|302532178|ref|ZP_07284520.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C]
 gi|302441073|gb|EFL12889.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. C]
          Length = 324

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 16/326 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T +  +  A   L AG  +A+PTETVYGL  D+ N  A+ R++E+K RP+ +PLI H+  
Sbjct: 3   TRTTDIAAAAGVLRAGGLVALPTETVYGLGADAENADAVNRIFEVKGRPSSHPLIVHIGG 62

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
              +      V P +  LA+ FWPGPLTLVL       +   +T  L+T   RVP     
Sbjct: 63  AEQLDDWVEEVSPTARLLAERFWPGPLTLVLRR--GRRVPLEATGGLETVAVRVPDHPVA 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +L+  +G  +  PSANR G +S T   H+  + + + + L++DGG  ++G+ESTIV+V 
Sbjct: 121 LELLAAFGGGVTAPSANRFGSVSPTTADHV-GAELGEAVDLVLDGGPCQVGVESTIVDVT 179

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------ 238
            +    ILRPGG+  E L+  +   L   V  TS  + PG   SHYAPR++V L      
Sbjct: 180 GDVP-SILRPGGVTREDLEAVLGFPL--AVPSTSQVRVPGQHPSHYAPRARVVLVEPETV 236

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDSGASS 296
            A     +E   R G +  +  + A +  +  +   G     A  L+ +++  DD G   
Sbjct: 237 VAEAERAQEQGHRVGLLLPRPFDGADVKAHAVVEVPGSPAAYARGLYGFLRELDDRGCDL 296

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPR 322
           I  S     GLG+AI NRL RAA PR
Sbjct: 297 IVASLPAEEGLGLAIANRLRRAAGPR 322


>gi|255657436|ref|ZP_05402845.1| hypothetical protein CdifQCD-2_17451 [Clostridium difficile
           QCD-23m63]
          Length = 346

 Score =  325 bits (833), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 22/331 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++   + L  G  +  PTETVYGL  ++ +  A++++YE K RP+ NPLI H+ +   
Sbjct: 16  EEIKIQAKLLREGKTVIFPTETVYGLGANALDENAVKKIYEAKGRPSDNPLIVHIYEKEE 75

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           V   A  +   +  + +  WPGP+T++L+      I   ++  L T   R+P     + +
Sbjct: 76  VYDLAKDISDKAKLVIEKLWPGPITIILN--KKDIIPYKTSGGLDTVAIRMPSNIIARAI 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN SG+ S T  KH+    +   +  I+ GG S  GLEST++++  E+
Sbjct: 134 IKEAGIPIAAPSANISGRPSPTKAKHVY-EEMNGRVDGIVLGGDSNFGLESTVLDLT-EE 191

Query: 188 KVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRLRAIHV 243
              ILRPG +  E L+  +  V+L+  + +       ++PGM   HY+P + V + +   
Sbjct: 192 TPMILRPGSITKEVLEELLGEVKLDPSLSKKEDNQKAKAPGMKYKHYSPNADVYIISGKR 251

Query: 244 N------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                         RE  ++ G +             +     L+E A NLF+ +   D 
Sbjct: 252 ENVAIKINDMIKSNREKGLKTGVMCTSKNREFYDGEVIDLGNSLEEVASNLFDALIEMDK 311

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                I     P  G+G AI NRL ++A  +
Sbjct: 312 KSVDVIYSEEFPKTGVGQAIMNRLLKSAGYK 342


>gi|319788962|ref|YP_004090277.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 7]
 gi|315450829|gb|ADU24391.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus albus 7]
          Length = 338

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 104/333 (31%), Positives = 168/333 (50%), Gaps = 26/333 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N++  A E + AG  + IPTETVYGL  ++ +  A+ +++  K RPA NPLI H+S  
Sbjct: 10  DENSINTAAELIRAGEVVGIPTETVYGLGANAFDEDAVHKIFAAKGRPADNPLIVHISSF 69

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
             +K     +  L+   A+ FWPGPLT+++    +  I  +++  L T   R+P     +
Sbjct: 70  EEIKPLVTEIPALAEKCAEKFWPGPLTMIMP--KSDKIPLVTSGGLDTVGIRMPSNATAR 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            +I+  G P+A PSAN SG  S T   H+L+  +   IP I+DGG   +G+EST+++ + 
Sbjct: 128 AIIKASGCPIAAPSANLSGSPSPTTAMHVLND-MDGRIPAIVDGGACGVGVESTVISFEG 186

Query: 186 EKKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
              +R+LRPG + +E LK       +   +   + E +  +SPGM   HYAP+++V +  
Sbjct: 187 NG-IRLLRPGFISVEDLKEITENVMVDKGVLEMLGEGAKVRSPGMKYKHYAPKAEVTIID 245

Query: 241 IHVNPREALIR-----------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                  A  R           F     + +      L  +     +E A +LF+ ++  
Sbjct: 246 GSSEQFNAFCRENASADDVLMVFTEADAQGLPQRKTVLGATD----EEQAQHLFDALRGF 301

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D+  A  +        G+G+A+ NRL RAAA R
Sbjct: 302 DEMCAEKVWARCPRKTGVGLAVYNRLLRAAAFR 334


>gi|259046349|ref|ZP_05736750.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella adiacens ATCC
           49175]
 gi|259036986|gb|EEW38241.1| Sua5/YciO/YrdC/YwlC family protein [Granulicatella adiacens ATCC
           49175]
          Length = 336

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 169/336 (50%), Gaps = 19/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+    T  N L  A + L  G  ++ PTETVYGL   + +  A+ +++E K RP+ NPL
Sbjct: 1   METQIFTKEN-LDIAAKALQQGEIVSFPTETVYGLGAIATSQEAVLKVFEAKGRPSDNPL 59

Query: 61  ICHVSDISMV-KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+SDI  +      V  ++L LAK FWPGPLT++L         P  +A L T  FR+
Sbjct: 60  IVHISDIQQMTSTVEEVPEIALTLAKAFWPGPLTMILKAKPGI-YAPALSAGLPTVSFRM 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T +LI   G PL  PSAN S + S T V+H+    +   I  I+DGG S +G+ES
Sbjct: 119 PNHPLTLELITKVGIPLVGPSANLSTKPSPTKVQHVF-EDMNGRIRGIVDGGSSTVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           T++++  E+   ILRPG +  E ++  I      +     E   P+SPGM   HYAP++ 
Sbjct: 178 TVIDLTNEEGPVILRPGVITKEQIESVIGPIQSSVTTKTGEREIPKSPGMKYRHYAPKTP 237

Query: 236 VRLRAIHVNPREALIR--------FGNVPIKNIENAIISL--NLSKTG-KLKEAAFNLFN 284
           V +    V      I+         G +    I +A+ S    + K G  + +   +LF+
Sbjct: 238 VLVVEGAVESFTKAIQEAQNNGKTVGIMAQNAIVDAVESRVKGIYKMGTSVDDMNRSLFD 297

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D      I     P  G+GIA  NRL++AA+
Sbjct: 298 ALRTLDHLELDIILAQGAPEEGVGIAYMNRLKKAAS 333


>gi|149204213|ref|ZP_01881181.1| Sua5/YciO/YrdC family protein [Roseovarius sp. TM1035]
 gi|149142655|gb|EDM30700.1| Sua5/YciO/YrdC family protein [Roseovarius sp. TM1035]
          Length = 315

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 134/318 (42%), Positives = 176/318 (55%), Gaps = 14/318 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D      A     AG  +A PTETVYGL  D+R+  A+ R++E K RP  NPLI HV   
Sbjct: 11  DLAGFATASAIWSAGGLVAFPTETVYGLGADARDDRAVARIFEAKGRPRFNPLIVHVESD 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
              +++ +    +  LA  FWPGPLTLVL L +   + PL TA L T   RVP     + 
Sbjct: 71  DAARRYVTWSDAAEILASAFWPGPLTLVLPLRADAGLSPLVTAELPTLAIRVPEHPVARG 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+ T+G P+A PSAN SG+IS T   H+L + +   I  +I+GG   +G+ESTIV +  E
Sbjct: 131 LLSTFGGPVAAPSANPSGRISPTTAAHVL-AGLSGRIEGVIEGGACAVGVESTIVGLAGE 189

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             +  LRPGG+ +E ++ A+ + L   V       +PG L+SHYAP + VRL A      
Sbjct: 190 PCL--LRPGGVPVEAIEVALGMPLARHV-AGDPLVAPGQLQSHYAPGAPVRLNAQDRRAG 246

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E L+ FG V           +NLS +G L EAA NLF ++   D   A  IA S IP  G
Sbjct: 247 ELLLGFGAV--------DADMNLSPSGDLIEAAANLFGHLHALDARDAP-IAVSPIPEVG 297

Query: 307 LGIAINNRLERAAAPRNQ 324
           LG AIN+RL RAAAPR  
Sbjct: 298 LGRAINDRLRRAAAPRGA 315


>gi|154247193|ref|YP_001418151.1| Sua5/YciO/YrdC/YwlC family protein [Xanthobacter autotrophicus Py2]
 gi|154161278|gb|ABS68494.1| Sua5/YciO/YrdC/YwlC family protein [Xanthobacter autotrophicus Py2]
          Length = 345

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 128/316 (40%), Positives = 179/316 (56%), Gaps = 4/316 (1%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++      A+ +A   L  G  +A PTETVYGL  D+ NP A+  LY  K RPA NPLI
Sbjct: 13  RLLPAAAPGAVEEAARLLSGGGLVAFPTETVYGLGADAANPQAVAALYAAKGRPAFNPLI 72

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            H  D +  ++  S +  +  LA+ FWPGPLTLV+       +  L+ A L T   RVP 
Sbjct: 73  AHTKDAASARRLGSFNRAANILAERFWPGPLTLVVPYAGGDGVCELARAGLDTVALRVPA 132

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 LI  +G  +  PSANRSG +S T   H++   +   I  ++DGG + +G+ESTI
Sbjct: 133 HGDAAALIAAFGGAVVAPSANRSGHVSPTTAAHVM-DDLSGRIDAVVDGGPTPVGVESTI 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLR 239
           ++V  E  V +LRPGGL  E ++ A+   +   V  + + P +PG L SHYAPR+ +RL 
Sbjct: 192 LDVTGEVPV-LLRPGGLAREEIEAALGHPIARPVATDDARPLAPGRLASHYAPRAALRLD 250

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           A HV P EAL+ F  +      NA   L+LS +G L EAA  L+  ++  D SGAS+IA 
Sbjct: 251 ATHVAPGEALLTFAGMAPDGTPNAGSVLDLSPSGDLTEAAARLYGALRALDASGASAIAV 310

Query: 300 SSIPNHGLGIAINNRL 315
             +P  GLG AI++RL
Sbjct: 311 VPLPRTGLGEAISDRL 326


>gi|114704376|ref|ZP_01437284.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal
           [Fulvimarina pelagi HTCC2506]
 gi|114539161|gb|EAU42281.1| Sua5/YciO/YrdC/YwlC protein family:SUA5:SUA5/yciO/yrdC, N-terminal
           [Fulvimarina pelagi HTCC2506]
          Length = 319

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/306 (42%), Positives = 184/306 (60%), Gaps = 3/306 (0%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             L  G  + +PTETVYGLA D+ N  A+ +++ +K+RP+ NPLI HV    +    A  
Sbjct: 17  RLLCEGECVVVPTETVYGLAADATNGEAVAKIFAVKERPSFNPLISHVYGRELAALLAHF 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   L + FWPGPLT+V  L S   +HPL+TA L T   R P G   +L      PLA
Sbjct: 77  GEIEHRLTEAFWPGPLTIVAPLRSDGGVHPLATAGLDTIALRQPVGVMAELSARLDRPLA 136

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG++S T+  H+ ++S+   + LI+DGG + +G+ESTIV  + + ++ +LRPGG
Sbjct: 137 APSANLSGRVSPTSAGHV-AASLGDRVSLILDGGTTSVGVESTIVRAESD-RIVLLRPGG 194

Query: 197 LEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
           +  E +  A  + +E  + +T+   +PG + SHYAP  +VRL A  V P E LI FG  P
Sbjct: 195 VPREAIVEATGLPVETIL-QTTKISAPGQMSSHYAPFGRVRLDAASVEPGEWLIAFGPEP 253

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
           ++   +A   +NLS +G L+EAA NLF  +   D     +IA   IPN G+G AIN+RL+
Sbjct: 254 VRGESSASGVVNLSPSGNLEEAAANLFGLLARLDRPDVPAIAVVPIPNEGIGEAINDRLK 313

Query: 317 RAAAPR 322
           RAAAPR
Sbjct: 314 RAAAPR 319


>gi|118586288|ref|ZP_01543743.1| translational factor, SUA5 family [Oenococcus oeni ATCC BAA-1163]
 gi|118433283|gb|EAV39994.1| translational factor, SUA5 family [Oenococcus oeni ATCC BAA-1163]
          Length = 337

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/336 (31%), Positives = 169/336 (50%), Gaps = 15/336 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++  T   A+ +A   + +G  +A PTETVYG+  D+    A+ +++  KKRP  NPL
Sbjct: 1   MTLVLKTSEKAIAEAANIMASGGVVAFPTETVYGIGADATKRDAVEKVFAAKKRPHDNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I  VS+  M  + A +D  +  L + FWPG LT++L L+    +    TA L TA FR P
Sbjct: 61  IVTVSNAEMAARFAKLDWRAEKLIENFWPGSLTMILPLIDQDILPDNVTAGLLTAAFRNP 120

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T+ LI    +P+  PSAN S + S T  +H+L   +   I  +ID G ++IG+EST
Sbjct: 121 KNDVTRHLITLLNNPIVGPSANLSTKPSPTTAEHVL-HDMDGRIDAVIDDGPTEIGVEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRS 234
           IV++   K+  ILRPG +  + +   +  ++        +     P++PGM   HYAP  
Sbjct: 180 IVDLSV-KQATILRPGAVTADQVSSVLGEKVIDPTGPISLAANIAPKAPGMKYRHYAPSK 238

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT--GKLKEAA----FNLFNYMKI 288
            V +               N  +  +E+++  L L +     L E A      LF+ ++ 
Sbjct: 239 AVVIFNQTDLKDLKQQLKKNDAVVALEDSLNQLKLDRRHSWSLGETADSATEELFSALRF 298

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            DD     +I   S+P+ G+G A  NRLE++A  ++
Sbjct: 299 FDDQKDIQTIYVESLPSEGIGEAYMNRLEKSAGGQH 334


>gi|315168546|gb|EFU12563.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX1341]
          Length = 340

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGADALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+  A++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQRATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|209964929|ref|YP_002297844.1| Sua5 [Rhodospirillum centenum SW]
 gi|209958395|gb|ACI99031.1| Sua5 [Rhodospirillum centenum SW]
          Length = 326

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 126/306 (41%), Positives = 165/306 (53%), Gaps = 9/306 (2%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A PTETVYGL  D+ N  A+  ++E K RP  NPLI HV D     +  +VD  +
Sbjct: 26  EGGLVAFPTETVYGLGADAGNDRAVASIFEAKGRPHFNPLIVHVPDDGAAGRLVTVDERA 85

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
            H  +++WPGPLTLVL       +  L +A L T   R P     + L+   G P+A PS
Sbjct: 86  RHAMEMWWPGPLTLVLPRRPDAPLSLLVSAGLDTVAVRCPGHPVARALLAAAGRPVAAPS 145

Query: 140 ANRSGQISITNVKHILSSSI---CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           ANRSG +S T   H+          ++ LI+ GG   IGLEST++++  E+ + +LRPG 
Sbjct: 146 ANRSGHVSPTTPLHVAEEFPDGAGGKLRLILAGGRCPIGLESTVLDLTGERPL-LLRPGS 204

Query: 197 LEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
           +  E L+  +              ++PGML SHYAP   VRL A    P EA + FG  P
Sbjct: 205 VTREELEAVLGPVDR--ATAADGVKAPGMLTSHYAPALPVRLEAAAPEPDEAFLAFG--P 260

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
            + I      LNLS TG L EAA NLF  ++  D  GA  IA   +P  GLG AIN+RL 
Sbjct: 261 DQFIRGGRERLNLSPTGDLHEAAANLFAMLRALDKPGARGIAVMPVPETGLGAAINDRLR 320

Query: 317 RAAAPR 322
           RAAAPR
Sbjct: 321 RAAAPR 326


>gi|300172698|ref|YP_003771863.1| putative translation factor [Leuconostoc gasicomitatum LMG 18811]
 gi|299887076|emb|CBL91044.1| Putative translation factor (Sua5 family) [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 335

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 104/328 (31%), Positives = 171/328 (52%), Gaps = 16/328 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           SN +++A E L AG  +A PTETVYGL  D+ N TA+++++  K RPA NPLI  ++D  
Sbjct: 8   SNDIKRAGELLRAGEVVAFPTETVYGLGADATNETAVKKVFTAKGRPADNPLIMTIADEK 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +   +  L   FWPG LT++L +     +  + T  L+T  FR+P     + +
Sbjct: 68  QLDEFVLISQAARQLMTAFWPGSLTIILPIKPKK-VAMIVTGGLQTVAFRLPDNDVARVV 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+  PSAN SG+ S T  +H+    +  +I  I+D G ++IG+EST++++    
Sbjct: 127 IRDAGVPIVGPSANTSGKPSPTTAQHVW-HDMNGKIAAIVDDGPTQIGVESTVIDMSANV 185

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL--RA 240
              ILRPG +  + L+  + V +      TS     TP++PGM   HYAP  +V +  R 
Sbjct: 186 P-TILRPGAVTQQQLQDVLGVTVIDATSTTSVASDVTPKAPGMKYRHYAPDKKVVMFDRL 244

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGK----LKEAAFNLFNYMKIADDS-GAS 295
             ++   +L     V  ++    ++ L+L ++      L+ A   LF  ++  DD    +
Sbjct: 245 DAIDLMHSLQTHDVVMAQDTTIEVMQLSLEQSWSLGETLETATEQLFAGLRFYDDEAQVA 304

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRN 323
           +I    +   G+G A NNRL +AA  + 
Sbjct: 305 TIYVEKMSPIGIGKAFNNRLAKAAGNQE 332


>gi|238927404|ref|ZP_04659164.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC
           43531]
 gi|238884686|gb|EEQ48324.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas flueggei ATCC
           43531]
          Length = 350

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 113/345 (32%), Positives = 169/345 (48%), Gaps = 28/345 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ S      + +A   +  G  +A PTETVYGL  +  +  A  R+YE K RP+ NPLI
Sbjct: 4   EVCSPVLEKDIARAAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D+SM+ + A   P  + HL   F PGP+T+V+       + PL T  L T   R P
Sbjct: 64  LHIADLSMLNETAEAVPSTAAHLLTAFAPGPITVVVP--KAVHVPPLVTGGLSTVGVRCP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++ I   G P+A PSAN SG+ S T    +  + +   IPLI+DGG    G+EST
Sbjct: 122 AHDIARRFIRAAGVPIAAPSANTSGRPSPTAAAMVY-ADMAGRIPLILDGGSCSFGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA---ISVELEYCV-DETSTPQSPGMLKSHYAPRSQ 235
           IV+   E +V ILRPG +  E +      I V ++  +  E + P++PGM  +HYAPR  
Sbjct: 181 IVDCTEEGRVTILRPGAVTYEMIAAEFPHIEVRMDTALSSENAAPRAPGMKYTHYAPRVP 240

Query: 236 V-----------------RLRAIHVNPREALIRFGN--VPIKNIENAIISLNLSKTGKLK 276
           +                  LR      R ALI        +K +  A+ + +    G   
Sbjct: 241 LTVFAGTGSDVTGALREEILRRTAAGERPALIASNETITALKGLIPAVYTYHCGARGNHS 300

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A  L++ ++  DD+ A+S+        GLG+AI NRL +A+  
Sbjct: 301 AFASCLYDALRHFDDTAATSLLAEGTGAVGLGLAIMNRLRKASGG 345


>gi|255283090|ref|ZP_05347645.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM
           14469]
 gi|255266392|gb|EET59597.1| Sua5/YciO/YrdC/YwlC family protein [Bryantella formatexigens DSM
           14469]
          Length = 348

 Score =  323 bits (830), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/336 (31%), Positives = 167/336 (49%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D  A+ +A   L AG  +A PTETVYGL  ++ + TA  ++Y  K RP+ NPLI H++ 
Sbjct: 12  IDEAAIAQAGRILQAGGLVAFPTETVYGLGANALDETASGKIYRAKGRPSDNPLIVHIAR 71

Query: 67  ISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           +  + + A+V P  +  LA+ FWPGPLT++        +   +T  L+T   R+P     
Sbjct: 72  MEDLYRIAAVVPEKAERLAEKFWPGPLTMIFPKKDC--VPYTTTGGLETVAVRMPEHPVA 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI+  G  +A PSAN SG+ S T  +H+ +  +  +I +IIDGG   IG+ESTIV++ 
Sbjct: 130 LALIKAGGGFVAAPSANSSGRPSPTRAQHV-AEDMTGKIEMIIDGGSVGIGVESTIVDMS 188

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240
            +  + ILRPG +  E L+  I  V  +  +   D T+ P++PGM   HYAP++ + +  
Sbjct: 189 GDVPM-ILRPGYINREMLEETIGEVGTDPAISGEDTTARPKAPGMKYRHYAPKADMLIVE 247

Query: 241 IHV--------NPREALIRFGNVP-------IKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                         E  ++ G +P        K+     I  ++         + +LF  
Sbjct: 248 GEEARVVSRINELVEKELKEGRMPGIIASEETKDRYVGGIVRSIGSRMDELSISRHLFGV 307

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D    S I   +     +G AI NRL +AA  
Sbjct: 308 LREFDSQNVSRIYSEAFDTPVMGQAIMNRLLKAAGH 343


>gi|262045802|ref|ZP_06018766.1| Sua5 family translation factor [Lactobacillus crispatus MV-3A-US]
 gi|260573761|gb|EEX30317.1| Sua5 family translation factor [Lactobacillus crispatus MV-3A-US]
          Length = 333

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 159/334 (47%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + +  A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M+ K+A  V   +  L K FWPGPLTL+L +   T +    T  L T  FR 
Sbjct: 60  IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IID G +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   
Sbjct: 178 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 236

Query: 236 VRLRAIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288
           V    +      A I F   + +  +   +  +NL +         L +A  NLF  ++ 
Sbjct: 237 V--VVVDDPADFAKIDFNEKIGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 295 FDDQDDIETIYVQGFHEGEESLAYMNRLNKAAGG 328


>gi|218135384|ref|ZP_03464188.1| hypothetical protein BACPEC_03289 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990769|gb|EEC56780.1| hypothetical protein BACPEC_03289 [Bacteroides pectinophilus ATCC
           43243]
          Length = 353

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/348 (30%), Positives = 172/348 (49%), Gaps = 34/348 (9%)

Query: 2   QIMSITDSNAL--RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           QI      +AL   KA + L +G  +A PTETVYGL  D+ N  A R++Y  K RP+ NP
Sbjct: 7   QITGNESEDALIYEKASKILRSGGLVAFPTETVYGLGGDALNKDASRKIYAAKGRPSDNP 66

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D + + K A  V   +L LA  F PGP+T++L       +   +T  L T   R
Sbjct: 67  LIVHIADRNDLYKLAEEVPETALKLADAFMPGPITIILKKKEC--VPGETTGGLDTVAIR 124

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      ++I   G  +A PSAN SG+ S T  K+++   +  ++ +II      IG+E
Sbjct: 125 MPRHPVAARMIRESGVYVAAPSANTSGRPSPTKAKYVI-EDLNGKVDMIIADDTVDIGIE 183

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS------TPQSPGMLKSHY 230
           STIV++  E+   +LRPG + +E L++ +  VE++  V+  +       P++PGM   HY
Sbjct: 184 STIVDL-SEEVPTVLRPGYITLEMLRKVLGRVEIDKAVEAGNILASDIAPKAPGMKYRHY 242

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENAII-----------------SLNLSKTG 273
           AP++++ + + + +      +   +  K +E+                      +L    
Sbjct: 243 APKAELTIVSGNEDS--VAQKINELVSKRLEDGAKVGIMTTDENIYRYTKGEVRSLGLRA 300

Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                A NLF  ++  DD GA  I   +  N  +G A+ NRL +AA  
Sbjct: 301 DEATVAKNLFAVLREFDDIGAEYIYSEAFANSNVGQAVMNRLIKAAGH 348


>gi|293381671|ref|ZP_06627652.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus 214-1]
 gi|290921718|gb|EFD98739.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus 214-1]
          Length = 334

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 158/334 (47%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + +  A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 2   MET-KIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M+ K+A  V   +  L K FWPGPLTL+L +   T +    T  L T  FR 
Sbjct: 61  IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 119

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IID G +++GLES
Sbjct: 120 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   
Sbjct: 179 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 237

Query: 236 VRLRAIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288
           V    +      A I F     +  +   +  +NL +         L +A  NLF  ++ 
Sbjct: 238 V--VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRY 295

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 296 FDDQDDIETIYVQGFHEGEESLAYMNRLNKAAGG 329


>gi|256853868|ref|ZP_05559233.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis T8]
 gi|307290431|ref|ZP_07570346.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0411]
 gi|256710811|gb|EEU25854.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis T8]
 gi|306498624|gb|EFM68126.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX0411]
 gi|315030389|gb|EFT42321.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecalis TX4000]
          Length = 340

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 106/317 (33%), Positives = 175/317 (55%), Gaps = 23/317 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL   + N  A++++Y++K RP+ NPLI HV+++ MVKK+ A++  ++
Sbjct: 21  GELVAFPTETVYGLGAAALNEAAVKKVYQVKGRPSDNPLIVHVNNVEMVKKYVATLPEVA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L   FWPGPLTL+ + + +       T  L+T  FR+P       LIE    PL  PS
Sbjct: 81  TKLVSAFWPGPLTLIFN-VPSDTFSKTVTGGLETVAFRMPDNQATLALIEQANVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKKVRILRPGGLE 198
           AN SG+ S T+ +H+    +  +I  I+D G ++IG+EST++++   +    ILRPG + 
Sbjct: 140 ANTSGKPSPTSAEHVY-HDLQGKIAAILDDGPTQIGVESTVLDLTAEDGVPVILRPGAIT 198

Query: 199 IETLKRAIS-VELE-YCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
            E L+  I  V+++ + + ET+ P++PGM   HY+P ++V + +      +A I+     
Sbjct: 199 KEQLESIIPQVKIDTHLISETAAPKAPGMKYKHYSPDAEVWIISGQTAEWQAAIQQAKEQ 258

Query: 257 IKNI--------------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + I              ENA +    ++T  ++ A   LF  ++  D+ GA++I     
Sbjct: 259 QEKIGLFLSDEQAAQLDTENAFVYSYGAET--VENATKELFAGLRALDEQGATTIFAQGF 316

Query: 303 PNHGLGIAINNRLERAA 319
              GLG A  NRL+++A
Sbjct: 317 AETGLGTAYMNRLKKSA 333


>gi|256842836|ref|ZP_05548324.1| Sua5 family translation factor [Lactobacillus crispatus 125-2-CHN]
 gi|256848800|ref|ZP_05554234.1| Sua5 family translation factor [Lactobacillus crispatus MV-1A-US]
 gi|295692625|ref|YP_003601235.1| sua5/ycio/yrdc/ywlc family protein [Lactobacillus crispatus ST1]
 gi|312977644|ref|ZP_07789391.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus CTV-05]
 gi|256614256|gb|EEU19457.1| Sua5 family translation factor [Lactobacillus crispatus 125-2-CHN]
 gi|256714339|gb|EEU29326.1| Sua5 family translation factor [Lactobacillus crispatus MV-1A-US]
 gi|295030731|emb|CBL50210.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus ST1]
 gi|310895383|gb|EFQ44450.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus crispatus CTV-05]
          Length = 333

 Score =  323 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 158/334 (47%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + +  A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 1   MET-KIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M+ K+A  V   +  L K FWPGPLTL+L +   T +    T  L T  FR 
Sbjct: 60  IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IID G +++GLES
Sbjct: 119 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   
Sbjct: 178 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 236

Query: 236 VRLRAIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288
           V    +      A I F     +  +   +  +NL +         L +A  NLF  ++ 
Sbjct: 237 V--VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRY 294

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 295 FDDQDDIETIYVQGFHEGEESLAYMNRLNKAAGG 328


>gi|222529067|ref|YP_002572949.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455914|gb|ACM60176.1| Sua5/YciO/YrdC/YwlC family protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 348

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 161/336 (47%), Gaps = 25/336 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L KA   L  G  +A PTETVYGL  ++    A+ +++  K RP  NPLI H+S 
Sbjct: 11  IDYKKLEKAALILREGGLVAFPTETVYGLGANALLKDAVDKIFLAKGRPQDNPLIVHISS 70

Query: 67  ISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
             M++  A + D     L ++FWPGPLT+VL       I    TA L T   R+P     
Sbjct: 71  KDMLEMCAEITDDRVYMLIEMFWPGPLTIVLP--KKNVIAENVTAGLSTVGVRMPANKIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            +LI   G P+A PSAN SG+ S T  KH++   +  ++ +IIDGG    GLEST+V++ 
Sbjct: 129 LELIRLSGVPVAAPSANVSGKPSPTEAKHVI-EDLMGKVDVIIDGGKCSFGLESTVVDLS 187

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240
            EK V ILRPG +    LK  +S +E    V E    + P+SPGM   HYAP +++ +  
Sbjct: 188 GEKAV-ILRPGAISYFALKEVLSDIEYSKAVVEGLTGTVPRSPGMKYKHYAPDAKLIIVK 246

Query: 241 IHVNPR------------EALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNY 285
             ++ R                R G +      +   S   L L      KE   NLF+ 
Sbjct: 247 GRIDKRIDKMNDMKKEFEYKGYRVGILCFYETAHNFESQYKLILGSMFDAKECGRNLFSI 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  +  G   I           +A+ NRL +AAA 
Sbjct: 307 LRKFNQLGVDYILCEWGKFDLEFLALENRLYKAAAN 342


>gi|91772214|ref|YP_564906.1| translation factor SUA5 [Methanococcoides burtonii DSM 6242]
 gi|91711229|gb|ABE51156.1| SUA5-type translation factor [Methanococcoides burtonii DSM 6242]
          Length = 350

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 107/333 (32%), Positives = 173/333 (51%), Gaps = 26/333 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A + +  G  +A PTETVYGL  ++ +P A++++++ K RPA NPLI HV+   
Sbjct: 16  EEELTRAADIIKEGGIVAFPTETVYGLGANALDPDAVKKIFKAKGRPADNPLIVHVASKD 75

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                A  +   +  L   FWPGPLTL+L   +   +  ++T  L T   R+P      +
Sbjct: 76  QCNDLAKNISQTAFKLMDEFWPGPLTLIL--KAKKVVPEITTGGLDTVGLRMPANEIALE 133

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            I   G PLA PSAN SG+ S T+ +H+ +  +  +I  IIDGG+ +IGLEST+V++  +
Sbjct: 134 FIRRSGTPLAAPSANTSGRPSPTSAEHV-TQDLEGKIDAIIDGGMVEIGLESTVVDITGD 192

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRA-- 240
               ILRPG +  E ++     VE+ Y    ++   T +SPGM  +HY+P ++V L    
Sbjct: 193 IPA-ILRPGKVSAEDIRECAGNVEIGYTDKTLEGNETARSPGMKYTHYSPETKVILIEGS 251

Query: 241 ----------IHVNPREALIRFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLFNYMK 287
                     +  N  +   R G +  + I ++I   ++ +L K  +  +AA ++F  ++
Sbjct: 252 SASVENTMVNLITNCHKKGKRVGLLATEEILDSINSDVTYSLGKKDEPNQAARSIFMGLR 311

Query: 288 IADDSGASSIAFSS-IPNHGLGIAINNRLERAA 319
             D+     I     +   G+G AI NRL +AA
Sbjct: 312 HLDNKEIDIILVDGTLKTDGIGAAIFNRLRKAA 344


>gi|197104025|ref|YP_002129402.1| Sua5/YciO/YrdC family protein [Phenylobacterium zucineum HLK1]
 gi|196477445|gb|ACG76973.1| Sua5/YciO/YrdC family protein [Phenylobacterium zucineum HLK1]
          Length = 307

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/318 (42%), Positives = 176/318 (55%), Gaps = 15/318 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M  TD +    A + L AG  + +PTETVYGLA D+ NP A+  +YE K RP+ NPLI H
Sbjct: 1   MDPTDPHT---AAQALKAGGLVLMPTETVYGLAADAANPRAVAAVYEAKGRPSFNPLISH 57

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           V+D+ M ++ A  DP +  L   FWPGPLTLVL    T  +  L+ A L T   R P   
Sbjct: 58  VADVGMARRIARFDPRAEALTARFWPGPLTLVLPAADTAAVCDLARAGLDTVAVRAPAHP 117

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + L++ +G P+  PSANRSG+ S T     L  +        +DGG  ++GLEST+V 
Sbjct: 118 LARALLQAFGGPVVAPSANRSGRPSPTTFAAALEET-GYAAAAALDGGPCEVGLESTVVA 176

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           +  E   R+LRPG +    ++  I         E    +SPG L  HYAP   VRL A  
Sbjct: 177 LLDE--ARLLRPGAVTRAEIEAVIG---PLAEAEADARRSPGRLARHYAPDLPVRLDAAA 231

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
               EA + FG  P         + NLS +G LKEAA NLF  ++ AD SGAS+IA + I
Sbjct: 232 PAAGEAFLAFGPAP-----ETARTFNLSPSGDLKEAAANLFAMLRAADRSGASAIAVAPI 286

Query: 303 PNHGLGIAINNRLERAAA 320
           P+ GLG AIN+RL+RAA 
Sbjct: 287 PHEGLGEAINDRLKRAAG 304


>gi|325109331|ref|YP_004270399.1| translation factor SUA5 [Planctomyces brasiliensis DSM 5305]
 gi|324969599|gb|ADY60377.1| translation factor SUA5 [Planctomyces brasiliensis DSM 5305]
          Length = 326

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 110/319 (34%), Positives = 176/319 (55%), Gaps = 14/319 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   L AG  +AIPTETVYGLA D+ NP A+  ++  K+RP  +PLI H+ + + +
Sbjct: 11  DIEQASRILHAGGLVAIPTETVYGLAADALNPEAVAGIFAAKQRPEFDPLIVHIYERAQL 70

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128
            +    + PL+  L   FWPGPLT +L+  ++  +  L T+ L T   R+P     ++L+
Sbjct: 71  SQLCREISPLAAELMNAFWPGPLTFILEKSAS--VPDLVTSGLSTVGVRMPEHETARELL 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                PLA PSAN  G+ S T   H++   +   I  ++DGG  ++G+ESTIV    E  
Sbjct: 129 RVSRLPLAAPSANLFGRTSPTTAAHVMK-QLDGRIDYLLDGGECRVGVESTIVRCH-EGV 186

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIHVN 244
           +++LRPGG  +E L++   V +E  +++  +P +PG L  HYAPR+++++    + + V 
Sbjct: 187 IQLLRPGGTPVEALEKFAPV-VETRLEDNESPAAPGQLLEHYAPRTKLQIIDPQQPLDVP 245

Query: 245 PREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
              AL+        +    +   +   LS++G L  AA   F  +   DD G + I  + 
Sbjct: 246 AGSALLTLQKAGFPDDFPFDQFEVVETLSESGDLTVAAARFFAALHALDDRGLNRIFATP 305

Query: 302 IPNHGLGIAINNRLERAAA 320
            PN  LG+A+N+RL RAAA
Sbjct: 306 FPNRELGLALNDRLRRAAA 324


>gi|227877273|ref|ZP_03995346.1| Sua5 family translation factor [Lactobacillus crispatus JV-V01]
 gi|227863129|gb|EEJ70575.1| Sua5 family translation factor [Lactobacillus crispatus JV-V01]
          Length = 339

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 157/334 (47%), Gaps = 18/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I   + +  A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 6   MMETKIFKKDQINDAVKLLAKGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 65

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M+ K+A  V   +  L K FWPGPLTL+L +   T +    T  L T  FR 
Sbjct: 66  IVTVSDEEMMAKYAKEVPERAKKLIKHFWPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 124

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IID G +++GLES
Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANTSTKPSPTTAEHVY-HDLKGKIAGIIDDGPTRVGLES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++  E  + +LRPG +  E L   +  ++      V +   P++PGM   HYAP   
Sbjct: 184 TIIDLSVETPI-VLRPGEITPEELSEVLGEKVLINTGKVSDKDIPKAPGMKYRHYAPSEP 242

Query: 236 VRLRAIHVNPREALIRFG-NVPIKNIENAIISLNLSKT------GKLKEAAFNLFNYMKI 288
           V    +      A I F     +  +   +  +NL +         L +A  NLF  ++ 
Sbjct: 243 V--VVVDDPADFAKIDFNEKTGVAALAPVLAKINLPQANKFDLGNNLVDADHNLFGGLRY 300

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 301 FDDQDDIETIYVQGFHEGEESLAYMNRLNKAAGG 334


>gi|225573947|ref|ZP_03782592.1| hypothetical protein RUMHYD_02041 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038806|gb|EEG49052.1| hypothetical protein RUMHYD_02041 [Blautia hydrogenotrophica DSM
           10507]
          Length = 356

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 25/336 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + + +A + L  G  +A PTETVYGL  ++ +  A  ++Y  K RP+ NPLI H++ +
Sbjct: 14  EQDIISQAGKILREGGLVAFPTETVYGLGGNALDAAASEKIYAAKGRPSDNPLIVHIARM 73

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             ++K  + V   +  LA+  WPGPLT++L    + ++   +T  L +   R P     +
Sbjct: 74  EDLEKIVTGVPKKAKILAEACWPGPLTMILP--KSEEVPYETTGGLDSVAVRYPSHPVAQ 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G  +A PSAN SG+ S T   H+    +   + +I+DGG   IG+ESTIV+   
Sbjct: 132 ALILAAGGFVAAPSANTSGRPSPTTAAHV-QEDLTGAVDMILDGGQVGIGIESTIVDFT- 189

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241
           EK   +LRPG + +E LK  +  V+++  +   D +  P++PGM   HYAP++++ +   
Sbjct: 190 EKIPTVLRPGYISLEKLKELLGEVKMDKGLLRADASQRPKAPGMKYRHYAPKAELTIVEG 249

Query: 242 HVNPREALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                 A I                 G        ++ +   +    K +  A +L+  +
Sbjct: 250 STEYVVAYINQKAKEASKRGRQIGIIGTEETFPYYSSGVVRCIGSRKKEEGIALHLYEVL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  D     +I   S     +G AI NRL +AA  R
Sbjct: 310 RDFDQCEVEAIYSESFDTPKMGQAIMNRLLKAAGHR 345


>gi|86139042|ref|ZP_01057613.1| Sua5/YciO/YrdC family protein [Roseobacter sp. MED193]
 gi|85824273|gb|EAQ44477.1| Sua5/YciO/YrdC family protein [Roseobacter sp. MED193]
          Length = 329

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 128/316 (40%), Positives = 173/316 (54%), Gaps = 9/316 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L +A + L  G  ++ PTETVYGL  D+R   A+  +Y  K RP+ NPLI HVS + 
Sbjct: 17  ASDLTRAAQLLRQGKLVSFPTETVYGLGGDARRGDAVAAIYTAKGRPSFNPLIAHVSSVE 76

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
             K++   +  +  LA+ FWPGPLTLVL L     I  L TA L T   RVP     +KL
Sbjct: 77  AAKRYVIWNAWAETLAQAFWPGPLTLVLPLAPDHGISELVTAGLDTLALRVPAHPTAQKL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A PSAN SG+IS T   H++ + +   I  ++  G   +GLESTIV +  + 
Sbjct: 137 LAELDVPVAAPSANSSGRISPTTADHVM-AGLAGRIAAVVADGACSVGLESTIVGLAGDA 195

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            + +LRPGGL  E ++  +   L    D      +PG L SHYAP+ +VRL A      E
Sbjct: 196 PM-LLRPGGLAAEQIEAVLGQPLA-SRDIHDPLTAPGQLLSHYAPQERVRLDATSPRAGE 253

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             + FG             L+LS TG L +AA NLF ++   D  G   IA + IP  GL
Sbjct: 254 CYLGFGPYSGAR----ACDLSLSDTGDLAQAAANLFGHLHRLDAQGLP-IAVAPIPETGL 308

Query: 308 GIAINNRLERAAAPRN 323
           GIAIN+RL RAAAPR+
Sbjct: 309 GIAINDRLRRAAAPRD 324


>gi|254381244|ref|ZP_04996609.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1]
 gi|194340154|gb|EDX21120.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. Mg1]
          Length = 335

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 113/324 (34%), Positives = 169/324 (52%), Gaps = 16/324 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ + +A E L AG  +A+PTETVYGL  ++ +P A+ R++++K RP  +PLI H++   
Sbjct: 15  TSDIERAAEVLRAGGLVALPTETVYGLGANAEDPAAVARIFQVKGRPPSHPLIVHIAAAE 74

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +       P +   LA+ FWPGPLTLVL       +   +T  L+T   RVP       
Sbjct: 75  HLDDWVETVPETARLLAEHFWPGPLTLVLRRGP--RVPLEATGGLETVAVRVPDHPVALA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +G  +  PSANR G +S T   H+  + +   + L++DGG  ++G+ESTIV+V  E
Sbjct: 133 LLSAFGGGVTAPSANRFGSVSPTTADHV-RTELGGAVDLVLDGGSCEVGVESTIVDVTGE 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               ILRPGG+  E L+  +S  +   V  TS  + PG   SHYAPR++V L        
Sbjct: 192 VP-SILRPGGVTREDLEAVLSRSM--AVPSTSHVRVPGQHPSHYAPRARVVLVEPEKVIA 248

Query: 247 EALI------RFGNVPIKNIENAIIS--LNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
           EA +      R G        +  +     ++  G +   A+ L+ +++  D  G   I 
Sbjct: 249 EAELAQGLGHRVGVFVPAAFADTPVKTHAVVTVPGSMDAYAYGLYGFLRELDQQGCDLIV 308

Query: 299 FSSIPNHGLGIAINNRLERAAAPR 322
            S  P  GLG+AI NRL RAA PR
Sbjct: 309 ASLPPEEGLGLAIANRLRRAAGPR 332


>gi|119720716|ref|YP_921211.1| Sua5/YciO/YrdC/YwlC family protein [Thermofilum pendens Hrk 5]
 gi|119525836|gb|ABL79208.1| translation factor SUA5 [Thermofilum pendens Hrk 5]
          Length = 366

 Score =  322 bits (827), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 100/342 (29%), Positives = 163/342 (47%), Gaps = 31/342 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+ ++ +A   L  G  +A PTETVYGL        A+ R++++K+RP  NPLI H+S  
Sbjct: 26  DAKSIEEAASILRKGGVVAFPTETVYGLGAVYHMRDAVIRVFKVKRRPPDNPLILHISSF 85

Query: 68  SMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S +   AS  P ++  LA+ FWPGPLT+VL    T+ +    T  L+    R+P      
Sbjct: 86  SQIYTLASEVPEAVHRLAEKFWPGPLTVVLP--KTSRVPYEVTGGLEKVAVRMPAHNVAL 143

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LIE  G P+A PSAN SG+ S T  +H+L + +  EI  ++D G +  G+EST++++  
Sbjct: 144 RLIEAVGDPIAAPSANLSGRPSPTTAQHVL-ADLGDEIDGVLDAGETLYGVESTVIDLTA 202

Query: 186 EKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +  V +LRPG + +E +++ +           + E     +PG    HY+PR+Q+ L  +
Sbjct: 203 DPPV-LLRPGAVPLEEVEKVLGKVCVPAFARGLGEAERALAPGTRYRHYSPRAQLVLVEL 261

Query: 242 HVNPREA----------------LIRFGNVPIKNIEN-----AIISLNLSKTGKLKEAAF 280
                 +                 +R G +              + L+L         A 
Sbjct: 262 KDYSDLSKLVDRVKRLVAENAGRGLRVGVLCTDETREHYSGLGAVVLSLGSRRDPFGIAR 321

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            L++  +  D  G   I    +   GLG+ I NR+ +A+  R
Sbjct: 322 RLYSSFREMDSLGVDVIVAEGVDERGLGLTIMNRMRKASTKR 363


>gi|295697767|ref|YP_003591005.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912]
 gi|295413369|gb|ADG07861.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912]
          Length = 359

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 106/336 (31%), Positives = 161/336 (47%), Gaps = 25/336 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  A+ +A +FL  G  +A PTETVYGL  ++ +P A+ ++Y  K RP  NPLI H+++ 
Sbjct: 20  NDPAILEAADFLRRGEAVAFPTETVYGLGANALDPAAVDKIYFAKGRPGDNPLIVHIAER 79

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V   A  + P +  L + FWPGPLT++L   +   +   +T  L T   R+P      
Sbjct: 80  RQVDDLAEEIFPAAARLMEAFWPGPLTVILP--AADRVPRRTTGGLDTVAIRMPAHPVAA 137

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            ++   G P+A PSANRSG+ S T  K +    +   IPL++DGG + IG+ESTI+    
Sbjct: 138 AILRVAGIPVAAPSANRSGRPSPTTAKDVW-EDLAGRIPLLVDGGPAGIGVESTIIGWPQ 196

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            + V ILRPGG+  E L+  +   +E           P +PGM   HYAP+ Q+ L    
Sbjct: 197 GRPV-ILRPGGISPEELQDVLGEPVELDDSWKASVDRPLAPGMKYRHYAPKGQLYLLRGD 255

Query: 243 VNPREALI------------RFGNVPIKNIENAI----ISLNLSKTGKLKEAAFNLFNYM 286
           ++   A I            R G +     +         +       L   A  L++ +
Sbjct: 256 LDAARAEIVRRATADHAAGRRVGVLTTAEGQGVYPAFCAVVACGTRRDLATVAAGLYSAL 315

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  D  G   +     P  G+G A+ NRL +AA  R
Sbjct: 316 RSFDHLGCEVMYAEPFPPEGIGWAVLNRLIKAAGHR 351


>gi|320529371|ref|ZP_08030459.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399]
 gi|320138337|gb|EFW30231.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas artemidis F0399]
          Length = 355

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 104/346 (30%), Positives = 162/346 (46%), Gaps = 30/346 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+S      +  A + +  G  +A PTETVYGL  +  +  A  R+Y  K RP+ NPLI
Sbjct: 4   QIISPVRDADIAHAAQMIRDGALVAFPTETVYGLGANGLDVAACARIYAAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D+SM    A  V P + HL   F PGP+T++L   +   +  + T  L T   R P
Sbjct: 64  LHIADLSMAADAARIVTPAAAHLLTAFAPGPITVILPKAAH--VPDIVTGGLSTVGVRCP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + LI   G P+A PSAN SG+ S T    + S  +   IP I+DGG  + G+EST
Sbjct: 122 DHDIARALIRAAGVPIAAPSANTSGRPSPTTAAMV-SDDLAGRIPCILDGGACRWGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRS 234
           IV+   +  V +LRPG +  E +   +  ++E  VD       + P++PGM   HYAPR+
Sbjct: 181 IVDCTEDGIVTVLRPGAVTREMIAAEL-PQMEVRVDPALTAADAVPRAPGMKYRHYAPRA 239

Query: 235 QVRLRAIHVNPREALIRF-------------------GNVPIKNIENAIISLNLSKTGKL 275
            + +     +   A +R                        +  + +          G  
Sbjct: 240 SLTVYTGAPDTVTAALRAEILRRRAEGTQVGLIASRETCAALTGLISPAYVYACGARGDD 299

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
              A  L++ ++  D++ A ++       HGLG+A+ NRL +A+  
Sbjct: 300 AAYANCLYDALRRFDNTDAGALLAEGTDEHGLGLAVMNRLRKASGG 345


>gi|15897573|ref|NP_342178.1| hypothetical protein SSO0664 [Sulfolobus solfataricus P2]
 gi|284174894|ref|ZP_06388863.1| hypothetical protein Ssol98_09601 [Sulfolobus solfataricus 98/2]
 gi|6015811|emb|CAB57638.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813830|gb|AAK40968.1| SUA5 related conserved hypothetical protein [Sulfolobus
           solfataricus P2]
 gi|261602336|gb|ACX91939.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus solfataricus 98/2]
          Length = 358

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 103/329 (31%), Positives = 161/329 (48%), Gaps = 22/329 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KA   + AG  +  PTETVYGL  ++ +P A+++++  K RP  NPLI H+S+I  
Sbjct: 15  DKIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKIFIAKNRPMDNPLIVHISNIDQ 74

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A   P   ++L  + WPGPLT VL    T  +   +T  L+T   R+P       L
Sbjct: 75  LYEVAKDIPKKIINLVNIVWPGPLTFVL--KKTEKVPKETTGGLETVAVRMPAHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN + + S T V+H++   I  ++ +I+D G +  G+EST++NV  + 
Sbjct: 133 INESGVPIAAPSANLATKPSPTRVEHVI-DDIYGKVDVILDSGETFFGVESTVINVTVDP 191

Query: 188 KVRILRPGGLEIETLKR----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240
            V +LRPG   +E L+R     +  E      E     +PGM   HYAP  ++ +     
Sbjct: 192 PV-LLRPGPFSVEELERLFGKVVVPEQAKGTAEFDVALAPGMKYKHYAPTKRLLVVENRS 250

Query: 241 ---------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                       + R AL+    V  +     I  + L     L E + NLF+  +  D 
Sbjct: 251 VLRGVINELQKRSCRIALLCASEVCKQFRGEKIEIIELGSENNLYEISRNLFDSFRKLDK 310

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S        SI   G+G+AI NR  +A+ 
Sbjct: 311 SNVDIGVIHSISEKGIGLAIMNRTRKASG 339


>gi|330834140|ref|YP_004408868.1| translation factor SUA5 [Metallosphaera cuprina Ar-4]
 gi|329566279|gb|AEB94384.1| translation factor SUA5 [Metallosphaera cuprina Ar-4]
          Length = 350

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 105/332 (31%), Positives = 162/332 (48%), Gaps = 24/332 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +++ +RKA E + +G  +A PTETVYGL  ++ +  A  ++++ K+RP  NPLI H++D+
Sbjct: 12  ETDLIRKAAEVIRSGGLVAFPTETVYGLGANAFDGKAAEKVFKAKRRPMDNPLIVHIADV 71

Query: 68  SMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +++ AS   P  + LA+  WPGPLT VL    T+ +   +T  L T   R+P      
Sbjct: 72  GQLEEVASDLSPEVMDLAQKVWPGPLTFVL--KKTSKVPLETTGGLNTVAVRMPAHPIAL 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN + + S T  +H++   +   + ++IDGG S  G+ESTI+N+  
Sbjct: 130 SLIRESGVPIAAPSANLATKPSPTLAEHVI-QDLDGSVDIVIDGGESFFGVESTIINLTV 188

Query: 186 EKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
           +  V +LRPG   +E L   +      E      E     +PGM   HYAP   + L   
Sbjct: 189 KPPV-LLRPGPFTVEELTTLVGEINVPEELTRGKEFGVALAPGMKYKHYAPDKTLYLVER 247

Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                     +    R A++       K  E  II   L  +  L   A NLF   +  D
Sbjct: 248 KSIFLDVVNILREKKRVAVLCSEETCSKLEEPRII---LGNSENLYSIAKNLFKSFRQLD 304

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                       P  G+G+AI NR+++A A +
Sbjct: 305 GLDVDLGVIEPFPEKGIGLAIMNRVKKATAHK 336


>gi|304438487|ref|ZP_07398427.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368570|gb|EFM22255.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 350

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 110/345 (31%), Positives = 170/345 (49%), Gaps = 28/345 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T +    +A   +  G  +A PTETVYGL  +  +  A  R+YE K RP+ NPLI
Sbjct: 4   EILRPTSTEHFARAAALIRDGQLVAFPTETVYGLGANGLDAAACARIYEAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D+SM+ + A  V P + HL   F PGP+T+++   +   I PL T  L T   R P
Sbjct: 64  LHIADLSMLHEAAEDVPPAAAHLLTAFAPGPITVIVPKAAH--IPPLVTGGLATVGVRCP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LI   G P+A PSAN SG+ S T    + ++ +   IPLI+DGG    G+EST
Sbjct: 122 AHDVARRLIRAAGMPIAAPSANISGRPSPTTAA-MTAADMMGRIPLILDGGSCSWGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA---ISVELEYC-VDETSTPQSPGMLKSHYAPRSQ 235
           IV+   E  + ILRPG +  E +      ++V ++   V   + P++PGM  +HYAPR  
Sbjct: 181 IVDCTEEGCITILRPGAVTPEMISAELPHLTVRMDAALVSADTAPRAPGMKYTHYAPRVP 240

Query: 236 VRLRAIHVNPREALIRF-------------------GNVPIKNIENAIISLNLSKTGKLK 276
           + + A         +R                      + +  +  A  + N    G   
Sbjct: 241 LTVFAGAGTDVVRALRIEIERRMAAGERPALIASNDTIMALSGLLPAAYTYNCGARGNQS 300

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A  L++ ++  DD+  +S+      + GLGIAI NRL +A+  
Sbjct: 301 TLAACLYDALRHFDDTDVTSLLAEGAGSVGLGIAIMNRLRKASGG 345


>gi|229829441|ref|ZP_04455510.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM
           14600]
 gi|229791872|gb|EEP27986.1| hypothetical protein GCWU000342_01531 [Shuttleworthia satelles DSM
           14600]
          Length = 504

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 108/336 (32%), Positives = 167/336 (49%), Gaps = 27/336 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              LR+  E L  G  +A PTETVYGL  D+ N  + R++Y  K RP+ NPLI H++D S
Sbjct: 7   KEILREPGEILREGGLVAFPTETVYGLGGDAENAESSRKIYAAKGRPSDNPLIVHIADFS 66

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++  A  + P    LA  FWPGPLT+++       I   +T  L T   R+P     ++
Sbjct: 67  QMEAIAQELAPQVRILADAFWPGPLTMIV--RKNDRIPLETTGGLDTVAVRMPSHPVARQ 124

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI + G  +A PSAN SG+ S T  +H+ +  +  +I  IIDGG  +IGLESTIV++  E
Sbjct: 125 LILSSGCMIAAPSANSSGRPSPTRAEHV-ADDLSGKIDAIIDGGPVEIGLESTIVDL-SE 182

Query: 187 KKVRILRPGGLEIETLKRAIS---VELEYCVDE---TSTPQSPGMLKSHYAPRSQVRLRA 240
               +LRPG + +  L+  +    V ++  + E   ++ P++PGM   HYAPR  +++  
Sbjct: 183 GIPTVLRPGYINLRMLEEVLGQDHVRMDPGLMEENVSARPKAPGMRYKHYAPRGDLKIVE 242

Query: 241 IHVNPREALI------------RFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNY 285
              +     I            + G +      +  +    + +      +E A +LF  
Sbjct: 243 GAADDVVETINRLSAEAIATGSKVGVIASAETRSRYLYGDIVEIGPRSDEEEIARHLFGV 302

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  DD G   I   +     +G AI NRL +AAA 
Sbjct: 303 LRHFDDQGIEIIYSEAFDTPQMGTAIMNRLIKAAAH 338


>gi|114798799|ref|YP_760549.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomonas neptunium ATCC
           15444]
 gi|114738973|gb|ABI77098.1| Sua5/YciO/YrdC/YwlC family protein [Hyphomonas neptunium ATCC
           15444]
          Length = 313

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 130/312 (41%), Positives = 170/312 (54%), Gaps = 13/312 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A E L  G  +A+PTETVYGLA D+ NP A+ RLY+ K RP  NPLI HVS   
Sbjct: 10  PETVALAVEILSGGGLVAMPTETVYGLAADAANPDAVVRLYQAKGRPRFNPLIAHVSGTE 69

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KL 127
           M  + A   PL+  LA+ FWPGPLTLVL +     +  L+ + L+T   R P       L
Sbjct: 70  MASREAVFSPLAERLAEKFWPGPLTLVLPVNPNGTVCDLARSGLQTVGLRCPSHPAANAL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I  +G P+  PSANRSG +S T  +H+ ++ +   I LI+DGG   +G+ESTI+ V+ E 
Sbjct: 130 ITEFGRPVVAPSANRSGHVSPTRAEHV-AADLSDRIDLILDGGPCDVGIESTILAVEGE- 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LR G +  + L+  I   LE          +PGMLKSHYAP +Q+RL A      E
Sbjct: 188 TATLLRSGAIPSDVLETFIGKSLERA--SGLAISAPGMLKSHYAPNAQLRLDAAAPEAGE 245

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
             + FG    +        LNLS  G L EAA  LF  ++  D      IA + IP  GL
Sbjct: 246 GYLGFGPGVREG-------LNLSPEGDLAEAATKLFAMLRALDAR-FDRIAIAPIPWEGL 297

Query: 308 GIAINNRLERAA 319
           G AIN+RL RAA
Sbjct: 298 GEAINDRLARAA 309


>gi|291548235|emb|CBL21343.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus sp. SR1/5]
          Length = 364

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 106/337 (31%), Positives = 165/337 (48%), Gaps = 25/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D  A+ +  E L  G  +A PTETVYGL  ++ +P A  ++Y  K RP+ NPLI H++D
Sbjct: 17  IDRKAIARGGEILKNGGLVAFPTETVYGLGGNALDPKASMKIYAAKGRPSDNPLIVHIAD 76

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           I  + K    V   +  LA+ +WPGPLT++L       +   +T  L +   R P     
Sbjct: 77  IRDLDKIVTEVPEKARILAEKYWPGPLTMILPKADI--VPKETTGGLDSVAVRFPSDPIA 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++LI   G  +A PSAN SG+ S T   H+ +  + + I +IIDGG   IGLESTIV+  
Sbjct: 135 QELILAAGGYVAAPSANTSGRPSPTTAGHV-AEDLGEAIDMIIDGGQVNIGLESTIVDFT 193

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240
            +  V +LRPG + +E L+  +  V ++  +   D    P++PGM   HYAP++ + +  
Sbjct: 194 EDIPV-VLRPGYISLEMLRETLGDVRMDKGLIKPDSKVHPKAPGMKYRHYAPKADLAIVE 252

Query: 241 IHVNPREALI--RFGNVPIKNIENAI-------------ISLNLSKTGKLKEAAFNLFNY 285
                  A I  R G    K +   I             I  ++    + +  A +L+  
Sbjct: 253 GSTEGVIAEIEKRAGEAEEKGLTVGIIATDETKGRYSHGIVKSIGSREQEETIAHHLYEV 312

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           ++  D    S+I   +     +G AI NRL +AA  +
Sbjct: 313 LRDFDSCNVSAIYSEAFFTPRMGQAIMNRLLKAAGHK 349


>gi|332663181|ref|YP_004445969.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331995|gb|AEE49096.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 317

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 170/316 (53%), Gaps = 11/316 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  IAIPTETVYGLA ++ + + + +++ IK+RP+ +PLI HV D+  ++
Sbjct: 6   IAQAAELLKRGEVIAIPTETVYGLAGNALDESTVAKIFAIKQRPSFDPLIVHVPDLQSLE 65

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P  +  LA+ F PG LTL+L+   T  I  L TA       R+P     ++L+ 
Sbjct: 66  NWVQNIPTAARQLAQHFMPGALTLLLEKKET--ISDLVTAGSPLVAMRIPAHPLAQELLR 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN  G IS T  +H+ +  +  +IP I+DGG   IGLESTIV    E + 
Sbjct: 124 LLPFPLAAPSANPFGYISPTRAEHV-AHQLGDQIPYILDGGPCTIGLESTIVGF-PEGRA 181

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI-HVNPREA 248
            I R GG+ +E ++  I   ++     +S PQ+PGMLKSHYAPR  + L  +  + P+  
Sbjct: 182 TIFRKGGIPVEAIEAVIG-PVQVQAHSSSNPQAPGMLKSHYAPRIPLVLGKLTELIPQHQ 240

Query: 249 LIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
               G +  +     I S     LS +G   EAA NLF+ M+  D      I    +P  
Sbjct: 241 GKAIGVLSFQERYPEIPSERQFALSSSGDYTEAARNLFSAMRYLDQLPLDLIVAELLPEE 300

Query: 306 GLGIAINNRLERAAAP 321
            LG AIN+RL RA++ 
Sbjct: 301 NLGRAINDRLRRASSK 316


>gi|309390218|gb|ADO78098.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium praevalens DSM
           2228]
          Length = 377

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 109/341 (31%), Positives = 174/341 (51%), Gaps = 29/341 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + KA E L     +A+PTETVYGLA ++ +P A+ +++  K RP  NPLI H++D +
Sbjct: 37  DEVILKAAELLSQNQLVALPTETVYGLAANALSPKAVSKIFAAKGRPQDNPLIVHIADQA 96

Query: 69  MVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +K+   A +   +  L   FWPGPLT++     +  +  L++A L+T   R+P      
Sbjct: 97  QLKELTAAKITAKTQALMDHFWPGPLTIIFP--KSKKVPNLTSAGLETIAIRMPAHPLIL 154

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            +IE+ G PLA PSAN SG  S T  +H+    +  +IPLI+DGG  ++G+EST+V+++ 
Sbjct: 155 AVIESSGLPLAAPSANTSGFPSPTQAEHVY-HDLKGKIPLILDGGPCQVGVESTVVDLRS 213

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
            + V++LRPGG+  + +   +  E+    D +  T  +PGM   HYAP    +L   +  
Sbjct: 214 AQ-VKVLRPGGISRQEIADFLGEEVLLAADLKDDTAVAPGMKYRHYAPNK--KLYTFNFE 270

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGK------------------LKEAAFNLFNYM 286
            +  +++      ++ + AIIS   SK                       E A  LF  M
Sbjct: 271 DKLFILKKALKKAESKKIAIISARNSKLDNYQLPTKNLKVLKVFSHQKPAELAQKLFALM 330

Query: 287 KIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           +  D D     I    +   G+G A+ NR+++AAA    SQ
Sbjct: 331 RSLDADPEVEEIYIEELAAQGIGEAVMNRIQKAAAAEEYSQ 371


>gi|150388176|ref|YP_001318225.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149948038|gb|ABR46566.1| Sua5/YciO/YrdC/YwlC family protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 356

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 104/338 (30%), Positives = 160/338 (47%), Gaps = 29/338 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L    E +  G  +A PTETVYGL  ++ +  AI +++  K RP+ NPLI HV+   
Sbjct: 18  DEILTACGEMIREGKTVAFPTETVYGLGANALDSKAINKIFVAKGRPSDNPLIVHVAHRV 77

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            V     V P  +  L   FWPGPLTLV++   +  I    +A L T   R+P     + 
Sbjct: 78  EVDALVRVIPEKAKKLMAHFWPGPLTLVME--KSHGIPGEISAGLSTVAIRMPVHPIART 135

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE  G P+A PSAN SG+ S T   H++   +  ++  II GG   +G+EST+++V  E
Sbjct: 136 LIEKAGVPVAAPSANTSGKPSPTRAAHVI-QDLRGKVDAIIAGGPCDVGVESTVLDVT-E 193

Query: 187 KKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +   ILRPGG+  E L+  I        L +  +    P+SPGM  +HYAP+++V +   
Sbjct: 194 ETPMILRPGGVTKEMLEAVIGEVALDPGLYHRGEMKDVPRSPGMKYTHYAPKAKVIIIEG 253

Query: 242 HVNPREALIRFGNVPIKNIENAIISL------------------NLSKTGKLKEAAFNLF 283
                   IR      K    ++  +                  ++      +  A NLF
Sbjct: 254 VEAAVVRKIREMVAYYKEKGLSVGVIVTDESLAYYDQVEECCVKSMGSRQNPETIANNLF 313

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             ++  D++  + I   ++   G+G A+ NRL +AA  
Sbjct: 314 RVLREFDETNVAIILSEAVEEVGIGQAVMNRLMKAAGN 351


>gi|327310576|ref|YP_004337473.1| sua5 family protein [Thermoproteus uzoniensis 768-20]
 gi|326947055|gb|AEA12161.1| sua5 family protein [Thermoproteus uzoniensis 768-20]
          Length = 346

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 105/325 (32%), Positives = 162/325 (49%), Gaps = 17/325 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   + +G  +A PTETVYGL  D+ N  A  R+++ K RPA NPLI HVS + 
Sbjct: 14  DEDIAEAAAVIRSGGLVAFPTETVYGLGADAFNAEASARIFKAKGRPADNPLIVHVSSLD 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           M  +   +   ++ +AK  WPGP+T V+      D+  + TA   T   R P      KL
Sbjct: 74  MALELGDMPEKAVEVAKKAWPGPITFVV--KKKADLPAVVTAGRPTVALRCPAHPVALKL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           IE  G P+A PSAN++G+ S T   H+ +  +   + LI+D G +  G+ESTIV+V  E 
Sbjct: 132 IEAAGTPIAAPSANKAGRPSPTEASHV-AEDLGDSVDLILDAGRTFFGVESTIVDVTREP 190

Query: 188 KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            V +LRPG   +E LK  +           + E     +PGM   HYAP + + L    +
Sbjct: 191 PV-LLRPGPFTVEELKSLLGEVEIPPFARGLGEADVALAPGMKYRHYAPETPLILVDFDL 249

Query: 244 -----NPREALIRFGNVPIKN-IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
                  RE  +R   + +     +A  ++N+     L E A NL++ ++  D       
Sbjct: 250 ASAVRAARELGLRVAVLCLAGRCADADAAINVGS--DLYEIAKNLYDALRRVDKVKVDVA 307

Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322
              ++P  G+G+AI NRL +A+  +
Sbjct: 308 LAPTVPERGIGLAIMNRLRKASGFK 332


>gi|227827742|ref|YP_002829522.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.14.25]
 gi|229579263|ref|YP_002837661.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|229581976|ref|YP_002840375.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|229585013|ref|YP_002843515.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.27]
 gi|238619914|ref|YP_002914740.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.4]
 gi|284997945|ref|YP_003419712.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.D.8.5]
 gi|227459538|gb|ACP38224.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.14.25]
 gi|228009977|gb|ACP45739.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012692|gb|ACP48453.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228020063|gb|ACP55470.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.27]
 gi|238380984|gb|ACR42072.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus M.16.4]
 gi|284445840|gb|ADB87342.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.D.8.5]
 gi|323474810|gb|ADX85416.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus REY15A]
 gi|323477515|gb|ADX82753.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus HVE10/4]
          Length = 358

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 98/329 (29%), Positives = 156/329 (47%), Gaps = 22/329 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KA   + AG  +  PTETVYGL  ++ +  A+++++  K RP  NPLI H+S+I  
Sbjct: 15  DKIKKAASVIKAGGTVVFPTETVYGLGANALDAEAVKKIFIAKNRPMDNPLIVHISNIDQ 74

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A   P   +++ K+ WPGPLT VL    T  +   +T  L T   R+P       L
Sbjct: 75  LYEVAKDIPEKIINIVKIVWPGPLTFVL--KKTDKVPKETTGGLDTIAVRMPAHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I     P+A PSAN + + S T  +H++   +  ++ +++D G +  G+EST++NV  + 
Sbjct: 133 INESDVPIAAPSANLATKPSPTKAEHVI-DDLFGKVDVVLDSGETFFGVESTVINVTVDP 191

Query: 188 KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240
            V +LRPG   +E L+R        E      E S   +PGM   HYAP  +  +     
Sbjct: 192 PV-LLRPGPFSVEELERIFGKIIIPEQAKGTGEFSVALAPGMKYKHYAPTKKFLVVENRG 250

Query: 241 ---------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                         R   +    V  +  E  I  + L     L E + NLF+  +  D 
Sbjct: 251 ILRDVIKELREKGYRVVFLCAHEVCKQFQEEKIEIIELGSENNLYEISRNLFDSFRKLDK 310

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S A      S+   G+G+AI NR  +A+ 
Sbjct: 311 SNADIGIIHSVSERGIGLAIMNRTRKASG 339


>gi|158422031|ref|YP_001523323.1| Sua5 protein [Azorhizobium caulinodans ORS 571]
 gi|158328920|dbj|BAF86405.1| Sua5 protein [Azorhizobium caulinodans ORS 571]
          Length = 354

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 122/308 (39%), Positives = 168/308 (54%), Gaps = 4/308 (1%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             +  G  +A PTETVYGL  D+ NP A+  +Y  K RPA NPLI HV D++  ++   +
Sbjct: 46  RLIGEGKVVAFPTETVYGLGADAGNPRAVAEVYAAKGRPAFNPLISHVPDLAAAEQLGVL 105

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135
           +  ++ LA+ FWPGPLTLV+    T  I  L+ A L T   RVP        +   G P+
Sbjct: 106 NADAVKLARAFWPGPLTLVVPCRDTDAICDLARAGLSTTALRVPNHPAALAFLAAAGRPV 165

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSANRSG +S T   H++ + +   I  ++D G + +G+ESTIV+   ++  R+LRPG
Sbjct: 166 VGPSANRSGHVSPTTAAHVM-ADLDGRIDAVLDAGPTMVGVESTIVDCSGDEP-RLLRPG 223

Query: 196 GLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN 254
           GL    ++  +   L          P +PG L SHYAP + VRL    V P EAL+ F  
Sbjct: 224 GLARADIEAVLGRPLPDAAGGDEAKPSAPGRLASHYAPNATVRLDVAEVRPGEALLTFAG 283

Query: 255 VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
                 E+A    +LS  G L EAA  L+  ++  D  GA+ IA   +P  GLG AI +R
Sbjct: 284 HRPTGSESAAFVYDLSPAGDLAEAASRLYGALRAIDARGAAGIAVVPLPREGLGEAIADR 343

Query: 315 LERAAAPR 322
           L RAAAPR
Sbjct: 344 LGRAAAPR 351


>gi|162149092|ref|YP_001603553.1| hypothetical protein GDI_3322 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787669|emb|CAP57265.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 338

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/320 (38%), Positives = 172/320 (53%), Gaps = 11/320 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   + +A + L AG  +A  TETVYGL  D+ N TA+ R++  K+RP  NPLI H  D 
Sbjct: 23  NDAGIARAADLLRAGGLVAFGTETVYGLGADATNDTAVARIFAAKERPRFNPLISHFPDA 82

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
                 A+ + ++  LA+ FWPGPLT+VL     + I  L+ A L +   RVP    T  
Sbjct: 83  EAAFAQAAPNDVARRLAERFWPGPLTMVLPRQPGSTISDLAAAGLPSVAVRVPRGAITTA 142

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A PSAN SG++S ++  H+L   +   I  ++D G   +G+EST++++   
Sbjct: 143 LLRAVGRPVAAPSANLSGRVSPSDAYHVLR-GLSGRIDAVLDSGPCPVGVESTVLDLTGT 201

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             + +LRPGG+ +E L               + P SPG L SHYAP   VRL A  V   
Sbjct: 202 APM-LLRPGGVTVEALSEVCGPISHPDDYADTLPLSPGRLASHYAPGLPVRLDAHDVAAD 260

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSI 302
           EAL+ FG      +  A +  NLS  G+L EAA  LF  ++  D  GA      IA   I
Sbjct: 261 EALLAFG----PELPGAGLVWNLSPAGRLDEAAARLFAGLRFLDSEGARRGLVRIAAMPI 316

Query: 303 PNHGLGIAINNRLERAAAPR 322
           P  GLG+AI +RL RAA+PR
Sbjct: 317 PRVGLGMAIRDRLRRAASPR 336


>gi|253581044|ref|ZP_04858305.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847707|gb|EES75676.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 350

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 102/346 (29%), Positives = 173/346 (50%), Gaps = 29/346 (8%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++S+T    D  A+R+  + L  G  +A PTETVYGL  D+ NP A  ++Y  K RP+ 
Sbjct: 4   EVVSMTADNLDMEAIRRGGDILKQGGLVAFPTETVYGLGGDALNPQASMKIYAAKGRPSD 63

Query: 58  NPLICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+++   +    A V   +  LA+ +WPGPLT++     +  +   +T  L +  
Sbjct: 64  NPLIVHIAEFDKLAPIVAEVPEKAKILAEKYWPGPLTMIFP--KSDLVPQETTGGLDSVA 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P     ++LI+  G  +A PSAN SG+ S T  +H+    + + I +IIDGG   IG
Sbjct: 122 VRFPSDRIAQELIKAAGGYVAAPSANTSGRPSPTTAQHV-EEDLGEAIEMIIDGGQVGIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEY---CVDETSTPQSPGMLKSHYA 231
           LESTIV+   +  V +LRPG + +E L+  +  V ++      D    P++PGM   HYA
Sbjct: 181 LESTIVDFTEDVPV-VLRPGYISLEMLQETLGDVRMDKGLIAADSKVRPKAPGMKYRHYA 239

Query: 232 PRSQV------------RLRAIHVNPREALIRFGNVPIKNIEN---AIISLNLSKTGKLK 276
           P++ +            ++  +    +    + G +     ++     + +++    + +
Sbjct: 240 PKADLAIVEGPEEAVVKKINELAAEAKAHGEQVGIIATDETKDRYPEGLVVSIGSRKEEE 299

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             A +L+  ++  D S   SI   +     +G AI NRL +AA  +
Sbjct: 300 TIAHHLYEVLRDFDQSAVRSIYSEAFYTPRMGQAIMNRLLKAAGHK 345


>gi|292669718|ref|ZP_06603144.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541]
 gi|292648515|gb|EFF66487.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas noxia ATCC 43541]
          Length = 350

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 109/345 (31%), Positives = 170/345 (49%), Gaps = 28/345 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T S    +A   + +G  +A PTETVYGL  +  +  A  R+YE K RP+ NPLI
Sbjct: 4   EILHPTSSVDFERAAGLIQSGELVAFPTETVYGLGANGLDAAACTRIYEAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D++M  +  +++ PL+ HL   F PGP+T++L   +   I  + T  L T   R P
Sbjct: 64  LHIADLTMAHEVTSNMPPLAAHLLTAFAPGPITVILPKAAH--IPDIVTGGLSTVGVRCP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LI   G P+A PSAN SG+ S T    +    +   IPLI+DGG  ++G+EST
Sbjct: 122 DHTAARRLIRAAGVPIAAPSANTSGRPSPTTAAMVY-EDMAGRIPLILDGGSCRLGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR---AISVELEYC-VDETSTPQSPGMLKSHYAPRSQ 235
           IV+   E  + +LRPG +  E +     AI V ++         P++PGM  +HYAPR  
Sbjct: 181 IVDCTEEGALTLLRPGAVTREMIAAELPAIEVRIDAALTAANEAPRAPGMKYTHYAPRVP 240

Query: 236 VRLRAIHVNPREALIRF-------------------GNVPIKNIENAIISLNLSKTGKLK 276
           + + A   +   A +R                        ++ I  A  + N    G   
Sbjct: 241 LTVYAGMGDDIRAALRAEFLRRTAAGERPAVIASNETLTALRAIIPAEHTYNCGARGNHS 300

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A  L++ ++  DD+  +S+        GLG+AI NRL +A+  
Sbjct: 301 AFAACLYDALRCFDDTDITSLLAEGTGADGLGLAIMNRLRKASGG 345


>gi|163789458|ref|ZP_02183897.1| Sua5/YciO/YrdC/YwlC family protein [Carnobacterium sp. AT7]
 gi|159875312|gb|EDP69377.1| Sua5/YciO/YrdC/YwlC family protein [Carnobacterium sp. AT7]
          Length = 341

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 104/333 (31%), Positives = 166/333 (49%), Gaps = 19/333 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I   + + KA   L  G  I+ PTETVYGL  D+ N  A++++Y  K RP+ NPLI HVS
Sbjct: 7   IYRPSEVLKAALKLQQGELISFPTETVYGLGADATNEAAVKKVYSAKGRPSDNPLIVHVS 66

Query: 66  DI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            I  + +    V  ++  L + FWPGPLTL+  +       P +TA L +   R+P    
Sbjct: 67  AIEEVEQYVVEVSEVASKLMETFWPGPLTLIFKVKEQA-FAPTATAGLDSVAMRMPDNAL 125

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T +LI   G PL  PSAN SG+ S T   H+    +  +I  ++D G + +GLEST+++V
Sbjct: 126 TLQLIRETGKPLVGPSANTSGKPSPTTAGHVF-HDLKGKIAGVLDDGETGVGLESTVLDV 184

Query: 184 QCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
               +  ILRPG    E L++ I       + +     P++PGM   HY+P   V +   
Sbjct: 185 TDPVRPTILRPGATTKEALEQIIGTVYVDRHLISSDEVPKAPGMKYKHYSPNEAVVIVDG 244

Query: 242 HVNPREALI--------RFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           + +  +  I        + G +  + I     +N   + +L +   + +AA  L++ ++ 
Sbjct: 245 NHDVWQKAIETYQKQGEKVGLLAEQAIVDHFQKNVSATYSLGENKNVNDAARLLYSGLRY 304

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            + + A+ I   +    GLG A  NRL++AA  
Sbjct: 305 FEKTTATVILAQAYAEKGLGEAYMNRLKKAAGN 337


>gi|227830451|ref|YP_002832231.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.S.2.15]
 gi|227456899|gb|ACP35586.1| Sua5/YciO/YrdC/YwlC family protein [Sulfolobus islandicus L.S.2.15]
          Length = 358

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 98/329 (29%), Positives = 155/329 (47%), Gaps = 22/329 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + ++KA   + AG  +  PTETVYGL  ++ +  A+++++  K RP  NPLI H+S+I  
Sbjct: 15  DKIKKAASVIKAGGTVVFPTETVYGLGANALDAEAVKKIFIAKNRPMDNPLIVHISNIDQ 74

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + + A   P   +++ K+ WPGPLT VL    T  +   +T  L T   R+P       L
Sbjct: 75  LYEVAKDIPEKIINIVKIVWPGPLTFVL--KKTDKVPKETTGGLDTIAVRMPAHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I     P+A PSAN + + S T  +H++   +  ++ +++D G +  G+EST++NV  + 
Sbjct: 133 INESDVPIAAPSANLATKPSPTKAEHVI-DDLFGKVDVVLDSGETFFGVESTVINVTVDP 191

Query: 188 KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--- 240
            V +LRPG   +E L+R        E      E S   +PGM   HYAP  +  +     
Sbjct: 192 PV-LLRPGPFSVEELERIFGKIIIPEQAKGTGEFSVALAPGMKYKHYAPTKKFLVVENRG 250

Query: 241 ---------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                         R   +    V  +  E  I  + L     L E + NLF   +  D 
Sbjct: 251 ILRDVIKELREKGYRVVFLCAHEVCKQFQEEKIEIIELGSENNLYEISRNLFGSFRKLDK 310

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           S A      S+   G+G+AI NR  +A+ 
Sbjct: 311 SNADIGIIHSVSERGIGLAIMNRTRKASG 339


>gi|332796229|ref|YP_004457729.1| Sua5/YciO/YrdC/YwlC family protein [Acidianus hospitalis W1]
 gi|332693964|gb|AEE93431.1| Sua5/YciO/YrdC/YwlC family protein [Acidianus hospitalis W1]
          Length = 351

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 98/325 (30%), Positives = 162/325 (49%), Gaps = 18/325 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +R+A +++  G  +A PTETVYGL  D+ NP A  ++++ K RP  NPLI H++D++ 
Sbjct: 15  DKIREAAKYIKLGGIVAFPTETVYGLGGDAYNPEAAIKVFKAKNRPMDNPLIVHIADLNQ 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +   A  +  + L +A+  WPGPLT +L    T  +   +T  L T   R+P      +L
Sbjct: 75  LFDVAKDIPDIVLDMAQKVWPGPLTFIL--KKTDKVPKETTGGLDTVAVRMPAHPIALQL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN + + S T  +H++ + +  ++ +IIDGG +  G+ESTI+N+    
Sbjct: 133 IRESGVPIAAPSANLATKPSPTKAEHVI-ADLNGKVDVIIDGGDTFFGVESTIINMTVNP 191

Query: 188 KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            V +LRPG   +E L + +      E      E +   +PGM   HYAP  ++ L   + 
Sbjct: 192 PV-LLRPGPFTLEELHQFLPEIVIPEQLIKGGEFTVALAPGMKYRHYAPSKKLLLVENYS 250

Query: 244 NPREAL----IRFGNVPIKNIEN----AIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
             ++ +     ++    +   E+        + L     L E A NLF+  +  D     
Sbjct: 251 IFKDVVKLLRSKYKVAVLCTTEDFKDFEEPRIILGSRENLYEIAKNLFDSFRKLDRLDVD 310

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
                 +P  G+G AI NR  +A+ 
Sbjct: 311 MGVMEGVPEKGIGFAIMNRARKASG 335


>gi|302527583|ref|ZP_07279925.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. AA4]
 gi|302436478|gb|EFL08294.1| Sua5/YciO/YrdC/YwlC protein [Streptomyces sp. AA4]
          Length = 338

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/323 (34%), Positives = 161/323 (49%), Gaps = 16/323 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + KA   L AG  +A PTETVYGL  D+ +P A+ R+Y+ K RP+ +PLI H++    +
Sbjct: 22  DIEKAAGVLRAGGLVAFPTETVYGLGADASDPAAVSRIYQAKGRPSTHPLIVHLAGAGFL 81

Query: 71  KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                  P     LA+ FWPGPLTLVL       +   +T  L+T   RVP       L+
Sbjct: 82  DGWVEKLPEPARLLAERFWPGPLTLVLRRGP--RVSSAATGGLETVGVRVPDHPVALALL 139

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +G   A PSANR G +S T  +H+  + +   +  ++DGG  ++G+ESTIV+   +  
Sbjct: 140 SAFGGGAAAPSANRFGSVSPTTAEHV-RAELGDAVDFVLDGGPCQVGVESTIVDATSD-T 197

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RA 240
           + +LRPGG+  E L+  +   L+  V  TS  + PG   SHYAPR++V L         A
Sbjct: 198 LSVLRPGGVPREDLEAVLGGPLD--VPSTSPIRVPGQHPSHYAPRAKVVLVEPDQVVAEA 255

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
            H       +     P +N         ++      E A  L+ +++  D  G   I  S
Sbjct: 256 AHARKLGHRVGVFLPPSQNGGAPEAHAVVAVPESTAEYARGLYGFLRELDRQGCDLIVAS 315

Query: 301 SIPNHGLGIAINNRLERAAAPRN 323
                GLG+AI NRL RAA PR+
Sbjct: 316 LPEETGLGLAIANRLRRAAGPRS 338


>gi|291294802|ref|YP_003506200.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus ruber DSM 1279]
 gi|290469761|gb|ADD27180.1| Sua5/YciO/YrdC/YwlC family protein [Meiothermus ruber DSM 1279]
          Length = 316

 Score =  320 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 10/321 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++  T  N L +A + + +G  +A PTETVYGL  ++ +  A  R++E K+RP+ +PLI 
Sbjct: 2   VVPPTPEN-LERAAQIIRSGGLVAFPTETVYGLGANALDARAAARIFEAKQRPSFDPLIV 60

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D  M++K    V  L+  L + FWPGPLTLVL    +  +  L T+ L T   R+P 
Sbjct: 61  HVADRGMLQKVVQEVPALAERLMERFWPGPLTLVLPR--SERVPGLVTSGLPTVAVRMPA 118

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               ++LI   G PLA PSAN  G +S T  +H+    +   + LI+DGG ++ G+ESTI
Sbjct: 119 HPVAQELIRRAGLPLAAPSANPFGYLSPTRAEHV-ERMLGGRVDLILDGGRTEFGVESTI 177

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V     +K  +LR G + +E L+R +   LE  V     P  PG L  HYAP + +R+  
Sbjct: 178 V--LLAEKPTVLRYGAVAVEELERVLG-RLELQVGAREKPLVPGQLPQHYAPHTPIRIAP 234

Query: 241 IHVNPREALIRFGNVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
               P     R G +  + +     +   LS TG L EAA +LF  +   D  G  +I  
Sbjct: 235 PSEIPLGLRKRVGYLAFQEVPKGFKVVKVLSPTGSLLEAAAHLFEALHQLDRLGLEAIYA 294

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             IP  GLG AI +RL RA++
Sbjct: 295 EPIPEVGLGRAIMDRLRRASS 315


>gi|330993932|ref|ZP_08317862.1| hypothetical protein SXCC_03827 [Gluconacetobacter sp. SXCC-1]
 gi|329758878|gb|EGG75392.1| hypothetical protein SXCC_03827 [Gluconacetobacter sp. SXCC-1]
          Length = 325

 Score =  320 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/330 (40%), Positives = 178/330 (53%), Gaps = 14/330 (4%)

Query: 1   MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           MQ   + D  +   +A   L AG  +A  TETVYGL  D+RN  A+  +Y  K RP +NP
Sbjct: 1   MQTRLLPDTPHGREEAAAILRAGGLVAFGTETVYGLGADARNDHAVAAIYAAKGRPGINP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI H +         +  PL+  LA  FWPGPLTLVL       I P++TA L TA  RV
Sbjct: 61  LISHFTTADAAFAQVTPTPLARGLASRFWPGPLTLVLPRAPGCAISPIATAGLSTAAVRV 120

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P G  T+ L+   G P+  PSAN SG++S ++  H+L + +   I  ++D G   +G+ES
Sbjct: 121 PAGGNTRALLAACGFPVVAPSANPSGRVSPSDALHVL-AGLDGRIDAVLDCGPCHVGVES 179

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           TIV++     V +LRPGG+ +E L+ A    V +       S P +PG L SHYAP   V
Sbjct: 180 TIVDLSGPAPV-LLRPGGVTLEALEAACGMPVAMPRASSNDSRPLAPGQLSSHYAPGLAV 238

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DS 292
           RL A  V   EAL+ FG      +  + +  NLS  G L+EAA  LF  ++  D      
Sbjct: 239 RLDADTVGADEALLAFG----PPLPGSPLVWNLSARGDLREAAARLFAGLRFLDMEGHRR 294

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           G   IA   +P HGLG AI +RL RAA+PR
Sbjct: 295 GLVRIAVQPVPAHGLGRAIRDRLVRAASPR 324


>gi|310815072|ref|YP_003963036.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25]
 gi|308753807|gb|ADO41736.1| Sua5/YciO/YrdC family protein [Ketogulonicigenium vulgare Y25]
          Length = 321

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/303 (43%), Positives = 178/303 (58%), Gaps = 12/303 (3%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A+PTETVYGLA D+    A+  +Y  K RP+ NPLI HV+DI+ V   A++   SL
Sbjct: 29  GQQVAVPTETVYGLAADATCDDAVAGIYAAKGRPSFNPLIVHVADIADVAAFAALSGESL 88

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            LA+ FWPGPLTLVL L +   I  L TA L+T   R+P     + LI+  G PLA+PSA
Sbjct: 89  ALAQAFWPGPLTLVLPLRADAPISKLVTAGLETVAVRLPAHPVARALIKAAGVPLAMPSA 148

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG+IS T  +H+L   +   I  ++DGG S +G+ESTIV V       +LR GG+  +
Sbjct: 149 NPSGRISPTAAQHVL-DGLAGRIAAVVDGGPSGVGVESTIV-VAGRGDAIVLRAGGVTPD 206

Query: 201 TLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
            +   +    L   + + + P +PG L SHYAP+  VRL A      E ++ FG+V    
Sbjct: 207 EIAAVLGYAPLRPDLSDEARPNAPGQLLSHYAPKGHVRLNATTAAAGEVMLGFGDV---- 262

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
               +  L LS  G L+EAA NLF      D  GA +IA + IP+ GLG+AIN+RL RAA
Sbjct: 263 ----VGDLTLSARGDLREAAANLFACFHRLDAMGAMAIAVAPIPDTGLGLAINDRLRRAA 318

Query: 320 APR 322
           APR
Sbjct: 319 APR 321


>gi|227513057|ref|ZP_03943106.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri ATCC
           11577]
 gi|227524272|ref|ZP_03954321.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus hilgardii ATCC
           8290]
 gi|227083632|gb|EEI18944.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus buchneri ATCC
           11577]
 gi|227088503|gb|EEI23815.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus hilgardii ATCC
           8290]
          Length = 340

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 104/337 (30%), Positives = 169/337 (50%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ + I   + + +A  F+  G  ++ PTETVYGL  D+ N TA++++Y  K RP+ NPL
Sbjct: 1   MKTL-ILKKDQIEQAANFIKKGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VS + MVKK+   ++  +  L K FWPG LT++  L     +    T  L TA FR 
Sbjct: 60  IVTVSSVEMVKKYVDHINDDAQKLIKAFWPGSLTMIFKLKPNV-LSKAVTGGLNTAAFRF 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G + +G+ES
Sbjct: 119 PQNQLTLDLITKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAIVDDGPTTVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           T++++   K   ILRPG +  + ++  I    ++  + V    TP++PGM   HYAP +Q
Sbjct: 178 TVLDMSV-KTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQ 236

Query: 236 VRLRAIHVNPREALIRFGN----VPIKNIENAIISLNLSKTGKL-------KEAAFNLFN 284
           V +     +  +      N    V +   +N I S++     ++       + A+ +LF 
Sbjct: 237 VYIVDPEDSWLDVAKWIENHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLFA 296

Query: 285 YMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+      I    +   G+  A  NRL ++A 
Sbjct: 297 DLREFDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAG 333


>gi|282600841|ref|ZP_05979863.2| Sua5/YciO/YrdC/YwlC family protein [Subdoligranulum variabile DSM
           15176]
 gi|282571097|gb|EFB76632.1| Sua5/YciO/YrdC/YwlC family protein [Subdoligranulum variabile DSM
           15176]
          Length = 339

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 108/337 (32%), Positives = 175/337 (51%), Gaps = 21/337 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q++ ++   ++  A E L  G  +A+PTETVYG+A D+RN  A+R+++E K RP  NPLI
Sbjct: 4   QVLPVS-GESIALAAELLRQGELVALPTETVYGIAADARNGDAVRKIFEAKGRPQDNPLI 62

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+  + M++     V   +L LA  FWPGPLT+V+   +  ++  ++ A L T   R+P
Sbjct: 63  VHICGMDMLQGIVSEVPERALKLAAAFWPGPLTMVMPRGA--EVSEVTCAGLDTVGVRMP 120

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + +I+  G   A PSAN SG+ S TN +  L + +   +PLI+DGG S +G+EST
Sbjct: 121 SHPVVQAVIKASGVAFAAPSANLSGKPSPTNAQDTL-ADMHGRLPLILDGGESAVGVEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPR 233
           +V+V  E  + +LRPG +  E ++  +  E++        + E    +SPGM   HYAP+
Sbjct: 180 VVSVTGEHPI-LLRPGYITKEQMEAVLGEEVQVSPAILEKLKEGEVARSPGMKYKHYAPK 238

Query: 234 SQVRLRAIHVNPREALIRFGNVP--------IKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           +QV +   +       +     P         +  +  + S+   +       A +LF  
Sbjct: 239 AQVTILRGNFEAYCRYVAEHAAPGVWALCFDGEGAQLPVPSIEYGRNHDGATQAHHLFTA 298

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           ++  D  GA  +        G+ +A+ NRL RAAA R
Sbjct: 299 LRDLDRHGAQVVYARCPEQDGISMAVYNRLIRAAAFR 335


>gi|326692968|ref|ZP_08229973.1| putative translation factor [Leuconostoc argentinum KCTC 3773]
          Length = 335

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 102/328 (31%), Positives = 168/328 (51%), Gaps = 16/328 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A   L AG  +A PTETVYGL  D+ N  A+++++  K RPA NPLI  V+D+ 
Sbjct: 8   TQDVQQAGALLKAGEVVAFPTETVYGLGADATNDAAVKKVFLAKNRPADNPLIMTVADVE 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +    ++   +  L   FWPG LT+++ +     +  L T  L+T  FR+P     + +
Sbjct: 68  QLTPFVTISEAARQLMTAFWPGSLTIIMPIKP-DQVSMLVTGGLQTVAFRLPANETARAV 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+  PSAN SG+ S T  +H+    +   I  I+D G +++G+EST++++  + 
Sbjct: 127 IRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQGRIAAIVDDGPTEVGVESTVIDMSTDT 185

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVRL--RA 240
              ILRPG +  + L+  +   +      TS     TP++PGM   HYAP   V +  R 
Sbjct: 186 P-TILRPGAVTQQQLEAVLQQPVFDATSTTSVASHVTPKAPGMKYRHYAPDKTVVMFDRL 244

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE----AAFNLFNYMKIADDS-GAS 295
             +  R  L     V  ++   A + L +++T  L E    A   LF  ++  D++   +
Sbjct: 245 DALALRSNLTAQDVVMAQDDTLATLQLPMTQTWSLGETLESATEQLFAGLRFYDETPEVA 304

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRN 323
           +I    +P  G+G A NNRL +AA  + 
Sbjct: 305 TIYVEKMPPIGIGKAYNNRLAKAAGNQE 332


>gi|171186194|ref|YP_001795113.1| Sua5/YciO/YrdC/YwlC family protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935406|gb|ACB40667.1| Sua5/YciO/YrdC/YwlC family protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 345

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 104/339 (30%), Positives = 161/339 (47%), Gaps = 21/339 (6%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+I+       D   ++ A E L  G  +A PTETVYGL  D+R+     R+++ K RP 
Sbjct: 1   MKILRTDPLRPDPQVVKTAAEVLRRGGIVAAPTETVYGLFADARSDAGCARVFKAKGRPP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            NPLI HV  + M  + A V      + K  WPGPLTLVL   S   +    TA L+T  
Sbjct: 61  DNPLIVHVDSVEMATEVAEVPAELYEVLKRVWPGPLTLVL--KSKGVVSRCVTAGLETVA 118

Query: 117 FRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P       +I   G P+A PSAN++G+ S T  +H++   +  E+ +++DGG +  G
Sbjct: 119 VRAPAHPVPLAIIRELGAPIAGPSANKAGRPSPTAAEHVV-EDLGGEVDVVVDGGPTFFG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231
           +ESTI++V     + +LRPG   +E L+R         +   + E     +PGM   HYA
Sbjct: 178 VESTIIDVTKRPPL-LLRPGPFTVEELERFFGPIEVPPVARGLSEADVAVAPGMKYRHYA 236

Query: 232 PRSQVRLRAIHVNPREALIRFGNV------PIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           P + + +    ++   A +R   +       +     A   L L     + E A NL+  
Sbjct: 237 PDTPLVVVHFDLSAAAAALRSRGLRVAVLCAVGKCAEADAVLRLG--DDIYEVAKNLYGA 294

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           ++  D          ++   G+G+A+ NRL +AA  R  
Sbjct: 295 LRELDRLSVDVGLVPAVEERGIGLAVMNRLRKAAGHREA 333


>gi|300855871|ref|YP_003780855.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
 gi|300435986|gb|ADK15753.1| putative translation factor [Clostridium ljungdahlii DSM 13528]
          Length = 349

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 104/340 (30%), Positives = 166/340 (48%), Gaps = 24/340 (7%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++ + D NA    + K  E+L  G  +AIPTETVYGLA D+ N  A+++++++K RP  
Sbjct: 9   EVLYVKDLNANYQNIVKGAEYLKKGEVVAIPTETVYGLAADAFNENAVKKIFKVKGRPQD 68

Query: 58  NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPL+ H+  +  V          +  +   FWPG +TL+ +      I    +A +KT  
Sbjct: 69  NPLLVHIYKLEQVYDICKDIHKDAEKVFDAFWPGSVTLIFNKKDC--ISDTVSAGMKTVG 126

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P     + +I+  G  L  PSAN SG+ S T+ +H  +  +  +IP I+DGG   IG
Sbjct: 127 VRFPKSEVARAIIKESGTLLVAPSANLSGKPSTTSAEHCYND-LNGKIPCILDGGPCSIG 185

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231
           LESTI+++     V +LRPG + ++ +++ I      +    V     P++PGM   HYA
Sbjct: 186 LESTIIDMSTPDPV-LLRPGAISLDDIRKVIPNLVYKKNLLSVKGNEIPKAPGMKYRHYA 244

Query: 232 PRSQVRLRAIHVNPREALIRFG----------NVPIKNIENAIISLNLSKTGKLKEAAFN 281
           P + V L           I+               +K+ +N     +L     L  AA  
Sbjct: 245 PDAPVTLVKGDYAKTSKWIKENANEENAVICFQEFLKDFKNYEHVYSLGSFKTLNAAAQK 304

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            F+ ++  D    S I   +  + GLG +I NRLE+A+A 
Sbjct: 305 TFDLLRECDKLNISHIYVQAPKDSGLGNSIINRLEKASAG 344


>gi|260951309|ref|XP_002619951.1| hypothetical protein CLUG_01110 [Clavispora lusitaniae ATCC 42720]
 gi|238847523|gb|EEQ36987.1| hypothetical protein CLUG_01110 [Clavispora lusitaniae ATCC 42720]
          Length = 388

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 168/345 (48%), Gaps = 28/345 (8%)

Query: 2   QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           QI        LR A   +   G  +A PTETVYGL   + +  ++R +Y  K RPA NPL
Sbjct: 36  QISDAETLENLRLAASHVRQSGSIVAFPTETVYGLGGSALDDDSVRAIYTAKNRPADNPL 95

Query: 61  ICHVSDISMVKKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           I HV+ +  +++        +  +   L   FWPGPLT++L +   + +  L TA   T 
Sbjct: 96  IVHVASVDQIQRLILPSSRQIPAVYEKLIAKFWPGPLTILLPIEKGSPVSQLVTAGQNTV 155

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI     PLA PSAN S + S T  +H+L   +   IP I+DGG   +
Sbjct: 156 GVRMPSDSVARALIALSDTPLAAPSANASTRPSPTLAEHVLYD-LDTRIPYILDGGPCTV 214

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKS 228
           G+EST+V+      + +LRPGG+  E ++ +           +    +T   ++PGM   
Sbjct: 215 GVESTVVDGLVSPPM-LLRPGGVSPEQIRESGGYGWNEVILAKKTAGKTEPVRTPGMKYR 273

Query: 229 HYAPRSQVRLRAIHVNPREALIRF-----GNVPI----KNIENAIISLNLSKTG----KL 275
           HY+P ++V L     + R A+ ++     G V +    + +  + + +++S         
Sbjct: 274 HYSPTARVILFVGCGDGRTAVRKYVDQHSGRVALLRSKQFVPASEMGISVSSDKEMGTSA 333

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            E A NLF  ++  D+SG   I   ++   G G+A+ NRL +AA+
Sbjct: 334 AEVARNLFRLLREVDESGVDMILVEAVDEVGDGLAVMNRLSKAAS 378


>gi|313113833|ref|ZP_07799400.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623860|gb|EFQ07248.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 358

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 108/340 (31%), Positives = 170/340 (50%), Gaps = 26/340 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  +D  ++ KA   L  G  +A+PTETVYG+A D+RN  A+++++  K RP  NPLI
Sbjct: 22  EILPASDEKSIEKAAALLQNGELVALPTETVYGIAADARNGEAVKKIFVAKGRPQDNPLI 81

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV+   M+      V   +  L   F PGPLT+++      ++     A L T   R+P
Sbjct: 82  VHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVAAECCAGLDTVGIRMP 139

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + +IE  G   A PSAN SG+ S TN + + +  +   +PLI+DGG   +G+EST
Sbjct: 140 SHPVARAVIEKSGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDVGVEST 198

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPR 233
           +V+V  EK   + RPG + +E L+RA+  E+E        + E +  +SPGM   HYAP+
Sbjct: 199 VVSVVGEKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPK 257

Query: 234 SQVRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
           + V L              H     + + F     K     +  +   + G   + A ++
Sbjct: 258 ADVTLLDGTFEQFKAYVDAHAEQNPSCLCFTGEAEKL---GVPCVEYGREGDGADQAKHI 314

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           F  ++  D+ G + +        GL +A+ NRL RAAA R
Sbjct: 315 FRCLRALDEQGDAVVYARCPQKDGLSMAVYNRLIRAAAFR 354


>gi|291166474|gb|EFE28520.1| Sua5/YciO/YrdC/YwlC family protein [Filifactor alocis ATCC 35896]
          Length = 339

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 17/329 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + ++KA   +  G  +  PTETVYGL  D+ NP A  ++Y  K RP+ NPLI H+SD+
Sbjct: 14  DDDKIKKASNIIQNGGLVIFPTETVYGLGADAFNPVASEKIYSAKGRPSDNPLILHISDL 73

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
            M+ K    V   +  L   FWPGPLT++ +      +    T  L T   R+P      
Sbjct: 74  DMLNKIVKNVPEKANKLINQFWPGPLTIIFE--KKDIVSDKITGGLNTVAVRMPSNPIAL 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             I     P+A PSAN SG+ SIT  +  +   +   +  I+    S+IGLESTI+++  
Sbjct: 132 SFIRNANTPIAAPSANISGKPSITRWEDAV-EEMGNRVDAILLSEPSEIGLESTIIDLTQ 190

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV-DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           +  + ILR G +    +++AI   E++  +  E   P++PGM   HY+P ++V + +   
Sbjct: 191 DVPM-ILRVGKISKTEIEKAIGFTEIDKTIFGEKDIPKAPGMKYKHYSPNAEVFIASKEN 249

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLK---------EAAFNLFNYMKIADDSGA 294
              +   ++   P  N     ++ N S     K         +AA   F++++ AD  G 
Sbjct: 250 FVEKVKQKYKASPSCNTVIFTMNQNKSYFKDEKVYLLGETTLQAAKFFFHFLRKADKEGY 309

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            +I    I    +G A+ NR  ++A  + 
Sbjct: 310 DTIIMEDISFDEIGEAVMNRARKSAGNKY 338


>gi|260102572|ref|ZP_05752809.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus helveticus DSM
           20075]
 gi|260083599|gb|EEW67719.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus helveticus DSM
           20075]
          Length = 339

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 105/334 (31%), Positives = 159/334 (47%), Gaps = 19/334 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + + +A + L  G  +A PTETVYGL   +    +++ +Y  K RP+ NPL
Sbjct: 7   MET-KIFKKDQIDEAVKLLAEGELVAFPTETVYGLGAIATKEKSVKGVYAAKGRPSDNPL 65

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VSD  M++++A  V   +  L K F PGPLTL+L +   T +    T  L T  FR 
Sbjct: 66  IVTVSDEKMMERYAKEVPERAKKLIKHFCPGPLTLLLFVKPGT-LPDAVTGGLDTVAFRC 124

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G+P+  PSAN S + S T  +H+    +  +I  IIDGG ++ GLES
Sbjct: 125 PDDQLTHDLIAKLGYPIVGPSANISTKPSPTTAEHVY-HDLKDKIAGIIDGGPTRFGLES 183

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQ 235
           TI+++  +  + +LRPG +  E L   +  ++        +   P++PGM   HYAP   
Sbjct: 184 TIIDLSVKTPI-VLRPGEITPEELSEVLGEKVLINTGKVADKDVPKAPGMKYRHYAPSEP 242

Query: 236 VRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +         I  N +  +   G+V  +         +L K   L +A  NLF  ++ 
Sbjct: 243 VVVVDDPADFGKIDFNDKTGVAALGSVLDQINLPEENKFDLGK--NLIDADHNLFGALRY 300

Query: 289 ADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD     +I           +A  NRL +AA  
Sbjct: 301 FDDKDDIETIYVQGFDEGEESLAYMNRLNKAAGG 334


>gi|189218176|ref|YP_001938818.1| translation factor SUA5 [Methylacidiphilum infernorum V4]
 gi|189185034|gb|ACD82219.1| Putative translation factor SUA5 [Methylacidiphilum infernorum V4]
          Length = 324

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 119/321 (37%), Positives = 172/321 (53%), Gaps = 16/321 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ KA + L+ G  +AIPTETVYGLA D  NP A+ R++E+KKRP ++P+I H S + 
Sbjct: 11  KKAIEKAVDLLNKGEVVAIPTETVYGLAADGLNPEAVARIFELKKRPKIDPVIVHCSSLK 70

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            V  +   +   +  L + FWPGPLTLVL    +  I  + TA L  A FRVP    T +
Sbjct: 71  EVGFYVCDLPDEARILGESFWPGPLTLVLKKKES--IPDIVTAGLPFAGFRVPKHPLTLE 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+ +G PLA PSAN+ G+IS T  + +      + IP I+DGG  ++G+EST+V+   +
Sbjct: 129 LIQKFGRPLAAPSANKFGKISPTTAQAVY-EEFDQIIPFILDGGPCQVGIESTVVSF-AQ 186

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR------A 240
               +LR G +  E ++R I   +      T    +PG    HYAP + +          
Sbjct: 187 IPPLLLRFGAISKEEIERKIG-PVTIPPPSTGWNLAPGRFPRHYAPSTPLETVFTLTDLP 245

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           ++     AL+ +G    +  +      NLS    L EAA NLF  ++  D SG   I   
Sbjct: 246 LYKRKNSALLFWGEEDTQGFKT---FRNLSPRKSLTEAAANLFQMLRDLDKSGVEKIYAL 302

Query: 301 SIPNHGLGIAINNRLERAAAP 321
            +P  GLGIAIN+RL++AA  
Sbjct: 303 LLPEKGLGIAINDRLKKAAGK 323


>gi|209545165|ref|YP_002277394.1| Sua5/YciO/YrdC/YwlC family protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532842|gb|ACI52779.1| Sua5/YciO/YrdC/YwlC family protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 323

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 123/320 (38%), Positives = 172/320 (53%), Gaps = 11/320 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   + +A + L AG  +A  TETVYGL  D+ N TA+ R++  K+RP  NPLI H  D 
Sbjct: 8   NDAGIARAADLLRAGGLVAFGTETVYGLGADATNDTAVARIFAAKERPRFNPLISHFPDA 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
                 A+ + ++  LA+ FWPGPLT+VL     + I  L+ A L +   RVP    T  
Sbjct: 68  EAAFAQAAPNDVARRLAERFWPGPLTMVLPRQPGSTISDLAAAGLPSVAVRVPRGAITTA 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G P+A PSAN SG++S ++  H+L   +   I  ++D G   +G+EST++++   
Sbjct: 128 LLRAVGRPVAAPSANLSGRVSPSDAYHVLR-GLSGRIDAVLDSGPCPVGVESTVLDLTGT 186

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             + +LRPGG+ +E L               + P SPG L SHYAP   VRL A  V   
Sbjct: 187 APM-LLRPGGVTVEALSEVCGPISHPDDYADTLPLSPGRLASHYAPGLPVRLDAHDVAAD 245

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS----SIAFSSI 302
           EAL+ FG      +  A +  NLS  G+L EAA  LF  ++  D  GA      IA   I
Sbjct: 246 EALLAFG----PELPGAGLVWNLSPAGRLDEAAARLFAGLRFLDSEGARRGLVRIAAMPI 301

Query: 303 PNHGLGIAINNRLERAAAPR 322
           P  GLG+AI +RL RAA+PR
Sbjct: 302 PRVGLGMAIRDRLRRAASPR 321


>gi|260576257|ref|ZP_05844249.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sp. SW2]
 gi|259021525|gb|EEW24829.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter sp. SW2]
          Length = 318

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 125/319 (39%), Positives = 175/319 (54%), Gaps = 17/319 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L  G  +A+PTETVYGLA D+R    + R++  K RP  NPLI H+ +++
Sbjct: 11  PAGIARAAAILRGGGLVAMPTETVYGLAGDARLDATVARIFAAKGRPGFNPLIVHLENLA 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             ++ A  D  +  LA+ FWPGPLTLVL   +   + PL +A L +   R+P     + L
Sbjct: 71  QARELAVFDARAEALAQAFWPGPLTLVLPRRADAGLSPLVSAGLASVALRLPAHPVARAL 130

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PLA PSAN SG++S T   H+    +   I  I+DGG  ++G+ES+IV +    
Sbjct: 131 LAAFGGPLAAPSANPSGRVSPTTSAHV-RDGLGGRIDAILDGGACEVGVESSIVGLT--G 187

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
              +LRPGG+ +E L+ A+   L    D  +   +PG L SHYAP + VRL      P E
Sbjct: 188 PATLLRPGGIPLEALEAALGSRLVTAAD-PAKITAPGQLASHYAPSAAVRLNVTSPLPDE 246

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAFSSIP 303
             + FG            +L LS  G L EAA  LF+ ++ AD      GA  IAF+ +P
Sbjct: 247 VWVGFGPAC------PGAALTLSPNGDLVEAAAALFHILRRADALAGPNGA--IAFAPVP 298

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL RAAAPR
Sbjct: 299 ETGLGRAINDRLRRAAAPR 317


>gi|58038771|ref|YP_190735.1| hypothetical protein GOX0296 [Gluconobacter oxydans 621H]
 gi|58001185|gb|AAW60079.1| Hypothetical protein GOX0296 [Gluconobacter oxydans 621H]
          Length = 337

 Score =  318 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 124/330 (37%), Positives = 176/330 (53%), Gaps = 15/330 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD-- 66
              +R+A E L AG  +A  TETVYGL   + + TA+ +++  K RP  NPLI H+ D  
Sbjct: 14  PEGIRRAAELLKAGKLVAFGTETVYGLGAIASSDTAVAKIFAAKGRPRFNPLISHLPDAE 73

Query: 67  --ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
              +       ++ ++  LA+ FWPGPLT+VL     + +  L+ A L T   RVP G  
Sbjct: 74  SAFAQASLSGRMEEIAHALAERFWPGPLTMVLPRSPNSTVSDLAAAGLSTLALRVPRGKT 133

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L+   G P+A PSAN SG +S ++  H+L S +   I  ++D G   IG+EST++++
Sbjct: 134 ALALLREVGAPVAAPSANVSGTVSPSDAFHVLRS-LDGRIDAVLDSGPCSIGVESTVLDL 192

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             E  V +LRPGG+ +E L                 P SPG L SHYAP   VRL A  +
Sbjct: 193 TREVPV-LLRPGGVTLEELTALCGPIRHPDDFSEIAPASPGRLASHYAPSLPVRLDATSI 251

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAF 299
            P EA + FG      +  A ++ NLS++G L+EAA  LF  ++  D      G  +IA 
Sbjct: 252 APDEAQLAFGT----PLPGAGLTWNLSESGNLEEAAARLFAGLRFLDAEGTRRGLKTIAA 307

Query: 300 SSIPNHGLGIAINNRLERAAAPRNQSQRIV 329
             IP HGLG+AI +RL RAA PR  +  + 
Sbjct: 308 QPIPRHGLGLAIRDRLRRAAEPRTHAATLT 337


>gi|310659435|ref|YP_003937156.1| sua5/ycio/yrdc/ywlc family protein [Clostridium sticklandii DSM
           519]
 gi|308826213|emb|CBH22251.1| sua5/yciO/yrdC/ywlC family protein [Clostridium sticklandii]
          Length = 347

 Score =  318 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 112/330 (33%), Positives = 172/330 (52%), Gaps = 21/330 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L K    L AG  +  PTETVYGL  ++ +P A +++YE K RP+ NPLI H+S   
Sbjct: 19  DEQLHKVANLLKAGKTVVFPTETVYGLGANALDPEAAKKIYEAKGRPSDNPLIVHISKKE 78

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            V   A ++   S  L + FWPGPLTL+LD   +  I   +T  L T   R+P     +K
Sbjct: 79  DVDFLAGNISQDSKLLMEDFWPGPLTLILDKSDSVPI--ETTGGLMTVAIRMPSNPIARK 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN SG+ SIT+ K+++   +C+ +  II    S+IGLEST+V++   
Sbjct: 137 LIDLAGVPIAAPSANISGRPSITSSKYLV-EELCERVDAIIISEDSEIGLESTVVDMTAS 195

Query: 187 KKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             V ILRPG +    +++ ++ E+E      DE + P+SPGM   HY+P + V +    +
Sbjct: 196 TPV-ILRPGKIGKTEIEKILNKEIELDPSLKDENAAPKSPGMKYKHYSPNATVIVVTGSL 254

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLK------------EAAFNLFNYMKIADD 291
           +  +  I       KNI + +  + L     L             EAA NLF  +++ D+
Sbjct: 255 DEMKQKINQKLSLDKNIGDKVKVVCLEDRVSLYDGYGISWGKSSQEAAKNLFKILRLMDE 314

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                + F ++ +  +  A+ NRL +AA  
Sbjct: 315 QNIEVVYFEALNSDEISEAVMNRLIKAAGN 344


>gi|294675961|ref|YP_003576576.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter capsulatus SB 1003]
 gi|294474781|gb|ADE84169.1| Sua5/YciO/YrdC/YwlC family protein [Rhodobacter capsulatus SB 1003]
          Length = 319

 Score =  318 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 171/304 (56%), Gaps = 17/304 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+R  TA+  +Y  K RP  NPLI HV+D+ M ++ A     +  LA
Sbjct: 28  VAFPTETVYGLGGDARQDTAVAAIYAAKGRPQFNPLIVHVADMEMAEQVAVFSDQARDLA 87

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
             FWPGPLTLVL       I  L TA L T   R+P     + L+  +G PLA PSAN S
Sbjct: 88  ARFWPGPLTLVLPARPEAGISDLVTAGLATVAVRMPAHPVARALLAAFGGPLAAPSANPS 147

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G++S T   H+L   +   I  ++DGG   +G+ESTI+ +       +LRPGG+++ETL+
Sbjct: 148 GKVSPTEADHVL-EGLSGRIAAVVDGGACPVGVESTILGLA---PPVLLRPGGVDVETLE 203

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
           +A+   L +   +   P +PG L SHYAP + VRL A    P E  + FG  P  +    
Sbjct: 204 KALGQPLAFG-GDAVKPNAPGQLVSHYAPGAAVRLDATEKRPGEIYLGFGPGPEAD---- 258

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAFSSIPNHGLGIAINNRLERAA 319
              L LS      EAA  LF  +++AD      GA++IA + IP  GLG AIN+RL RAA
Sbjct: 259 ---LTLSVRADPVEAATRLFAMLRVADKLATARGAATIAIAPIPETGLGRAINDRLRRAA 315

Query: 320 APRN 323
           APR 
Sbjct: 316 APRG 319


>gi|124009997|ref|ZP_01694660.1| translation factor SUA5 [Microscilla marina ATCC 23134]
 gi|123983955|gb|EAY24343.1| translation factor SUA5 [Microscilla marina ATCC 23134]
          Length = 320

 Score =  318 bits (816), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 114/314 (36%), Positives = 170/314 (54%), Gaps = 11/314 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  +AIPTETVYGLA ++ +  A+ R++E K RP  +PLI H   I  V+
Sbjct: 9   LTQASILLTQGKLVAIPTETVYGLAANAFDKKAVTRIFEAKNRPTFDPLIVHTHSIEQVQ 68

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +    +   +  LAK FWPG LT++L+      I  L TA L T   R+P    T +L++
Sbjct: 69  QFTKNIPEKAKKLAKQFWPGSLTILLE--KNDLIPDLVTAGLSTVAVRIPNHPLTLELLK 126

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN  G IS T   H+  + +  ++  IIDGG  ++G+ESTIV V+  +  
Sbjct: 127 QLDFPLAAPSANPFGYISPTTAGHV-EAQLKNKVSYIIDGGPCQVGIESTIVEVKNNQT- 184

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV-NPREA 248
            I R GG+ +E ++ A   ++E     +S P++ GMLKSHYAP+ ++ +  I    P+  
Sbjct: 185 TIYRLGGISVENIEAATG-KVEEVRHSSSNPKASGMLKSHYAPQKKMIIGDIAALLPQYP 243

Query: 249 LIRFGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
             + G +  +     +     + LS  G+L +AA  LF  M+  D+     I    +P  
Sbjct: 244 CDKVGILSFRKTYEQVPKNQQVVLSAEGELAKAAQGLFAGMRYLDNQPVEIILAELMPEK 303

Query: 306 GLGIAINNRLERAA 319
           GLG AIN+R+ RAA
Sbjct: 304 GLGRAINDRIRRAA 317


>gi|227510128|ref|ZP_03940177.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190333|gb|EEI70400.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 340

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 102/337 (30%), Positives = 166/337 (49%), Gaps = 21/337 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ + I   + + +A  F+  G  ++ PTETVYGL  D+ N TA++++Y  K RP+ NPL
Sbjct: 1   MKTL-ILKKDQIEQAANFIKEGELVSFPTETVYGLGADATNETAVKKVYAAKGRPSDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  VS + MV K+   +   +  L K FWPG LT++  L     +    T  L TA FR 
Sbjct: 60  IVTVSSVEMVTKYVDHISDDAQKLIKAFWPGSLTMIFKLKPNV-LSKAVTGGLNTAAFRF 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T  LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G + +G+ES
Sbjct: 119 PQNQLTLDLITKAGVPIVGPSANTSGKPSPTTAQHVY-HDLNGKIAAILDDGPTTVGVES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           T++++   K   ILRPG +  + ++  I    ++  + V    TP++PGM   HYAP +Q
Sbjct: 178 TVLDMSV-KTPSILRPGAVTKDDIEAVIHQNVIDELHHVGTDQTPKAPGMKYKHYAPNAQ 236

Query: 236 VRLRAIHVNP----REALIRFGNVPIKNIENAIISLNLSKTGKL-------KEAAFNLFN 284
           V +     +     +        V +   +N I S++     ++       + A+ +LF 
Sbjct: 237 VYIVDPEDSWLDVAKWIESHPQPVGVMAFDNVISSIDWPMNAQIVTLGSNSRTASRDLFA 296

Query: 285 YMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D+      I    +   G+  A  NRL ++A 
Sbjct: 297 DLREFDNHPEIKIIFTQGLKPSGIAEAYMNRLNKSAG 333


>gi|307244020|ref|ZP_07526139.1| Sua5/YciO/YrdC/YwlC family protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492544|gb|EFM64578.1| Sua5/YciO/YrdC/YwlC family protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 345

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 99/335 (29%), Positives = 158/335 (47%), Gaps = 25/335 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +      L +G  +  PTETVYGL  ++ +  A  ++Y+ K RP+ NPL+ H++D 
Sbjct: 14  DKDLIAVFASMLASGKTVIFPTETVYGLGANALDEEAAAKIYQAKGRPSDNPLLVHIADK 73

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             V      +D  +  L   FWPGPLT+V        I   ++  L T   R+P     +
Sbjct: 74  EDVYGLVENIDDRAKLLMDKFWPGPLTIVF--KKKDIIPDRTSGGLDTVAIRMPSDQVAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T  +HI+   +   +  I+ GG    G+ESTIV++  
Sbjct: 132 DLIRQAGVPIAAPSANISGRPSPTKPEHIIRD-MDGRVDGILVGGPCNYGVESTIVDLSG 190

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +    +LRPG + +E L   +  V+L+  +   D+    ++PGM   HY+P++QV +   
Sbjct: 191 D-VAMVLRPGSITLEMLGEVLGQVDLDPSLKNKDDNIRAKAPGMKYKHYSPQAQVYIVRA 249

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKL--------------KEAAFNLFNYMK 287
                 A  R   + + N +  + +  L+++                  E A NLF+ + 
Sbjct: 250 GDQEDFA-RRVDELCLDNAKKGLKTGVLTRSSDQHPYQAQVFDLGESDAEVAKNLFDSLI 308

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D               GLG+AI NRL++AA  R
Sbjct: 309 SLDRESIDIAYVPYFEEKGLGVAIMNRLKKAAGYR 343


>gi|296418740|ref|XP_002838983.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634977|emb|CAZ83174.1| unnamed protein product [Tuber melanosporum]
          Length = 435

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 164/370 (44%), Gaps = 54/370 (14%)

Query: 3   IMSITDS---NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            + I D     AL+ A + L  G  +A PTETVYGL  D+ +   +  +Y  K+RP+ NP
Sbjct: 61  TLEIDDPATLEALKDAADLLRQGKCVAFPTETVYGLGADATSTVGVNSIYTAKQRPSDNP 120

Query: 60  LICHVSDISMVKKH-------------------ASVDPLSLHLAKLFWPGPLTLVLDLLS 100
           LI HVS +  ++                       +  +   L   FWPGPLT++L L +
Sbjct: 121 LIVHVSSLRQLRGILAPTNPTSTTNGHATNTCGGEIPEVYNALISKFWPGPLTILLPLPT 180

Query: 101 -TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
             + +    TA       R+P     + L      PLA PSAN SG  S T+  H+L+  
Sbjct: 181 INSPLSASVTAGQPKFAARLPSHPIARALCYLSSLPLAAPSANASGNPSPTSASHVLTD- 239

Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV---------E 209
           +   IPLIIDGG   +GLEST+V+   +  V +LRPGG+ +E ++    +          
Sbjct: 240 LWNRIPLIIDGGPCSVGLESTVVDGLRDPPV-VLRPGGISVEAIRELGGIWARTIISKAS 298

Query: 210 LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI--------------RFGNV 255
           LE   D + TP++PGM   HY+PR+ V L      P                   + G +
Sbjct: 299 LEDAADPSITPEAPGMKYKHYSPRASVVLYEFGTPPLCGKDLVRSPILSAKNLNGKVGIL 358

Query: 256 PIKNIENAIISLNLS-----KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
             +  E+ I  L L           +E    LF  ++  DD G   I    I     G+A
Sbjct: 359 RTRTWEDGIGELTLGRLKYESNNGGEEIGRRLFAALRELDDEGVDVIHVEGIEEVLEGLA 418

Query: 311 INNRLERAAA 320
           + NRL +AA+
Sbjct: 419 VMNRLRKAAS 428


>gi|188587452|ref|YP_001918997.1| Sua5/YciO/YrdC/YwlC family protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179352139|gb|ACB86409.1| Sua5/YciO/YrdC/YwlC family protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 367

 Score =  318 bits (815), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 161/354 (45%), Gaps = 46/354 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +++A   +     +A PTETVYGL  +  +P AI+++++ K RP  NP+I H+  +
Sbjct: 13  DKTIIKQAAGIVRQNGLVAFPTETVYGLGGNGLSPAAIQKIFQAKNRPLDNPVILHLHSV 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           + V+           LA+ FWPGPLT+++       +   ++  L T   R+P       
Sbjct: 73  NQVETLGFPPEEFFFLAEKFWPGPLTMIIP--KKNIVPREASGGLDTVAVRMPDHNVALA 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+    P+A PSAN SG+ S T   H+    +   I +IIDGG + +GLEST++++  E
Sbjct: 131 LIQEAQVPMAAPSANLSGRPSPTTAAHV-ELDLSGRIDMIIDGGTTGVGLESTVIDL-SE 188

Query: 187 KKVRILRPGGLEIETLKRAISV----------------------ELEYCVDETSTPQSPG 224
           K  ++LRPGG+  E L  A+                          E    + ++ +SPG
Sbjct: 189 KPYQVLRPGGITAEQLASALDYCQDTFLYTGSEEDYYAEGNQSSCDEMITKDKNSIKSPG 248

Query: 225 MLKSHYAPRSQVRLRAI------------HVNPREALIRFGNVPI-------KNIENAII 265
           +   HY+P+ ++ L                 +  +   R G +          N+     
Sbjct: 249 VKYRHYSPQGELYLVEGSGHKLLHKMYEYANDFSKQGYRIGILLTNELLEEDGNLHKFCY 308

Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
              L    +L E A +L++ ++  D  G   I   +    G+G+A+ NRL +A+
Sbjct: 309 VRRLGNEDQLTEVAHSLYDALREMDQQGIEIILCRTFSPKGIGVALMNRLLKAS 362


>gi|210623302|ref|ZP_03293719.1| hypothetical protein CLOHIR_01669 [Clostridium hiranonis DSM 13275]
 gi|210153703|gb|EEA84709.1| hypothetical protein CLOHIR_01669 [Clostridium hiranonis DSM 13275]
          Length = 348

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/338 (29%), Positives = 163/338 (48%), Gaps = 29/338 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + +R+  E +  G  +  PTETVYGL  ++ +  A++++Y  K RP+ NPLI H++D
Sbjct: 13  IDIDIIREMAEKIRNGETVIFPTETVYGLGANAMDEDAVKKIYLAKGRPSDNPLIVHIAD 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           I  V K A  V   +    + FWPGPLT++L       +  +++  L T   R+P     
Sbjct: 73  IEEVDKIALEVGEKAKKAMENFWPGPLTIILKKKEI--VPNVTSGGLSTVAIRMPSNKIA 130

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI      +A PSAN SG+ S T  +H++   +   +  II GG    GLEST+V+  
Sbjct: 131 NALIRESKTQIAAPSANISGRPSPTKAEHVVKE-MSGRVSGIIMGGDCDFGLESTVVDFS 189

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS---TPQSPGMLKSHYAPRSQVRL-- 238
            +K + ILRPG +  E L+  +  V ++  + +       ++PGM   HY+P +QV +  
Sbjct: 190 DDKPM-ILRPGSITKEMLEEVLGEVSIDPSLSKKEDNIKAKAPGMKYKHYSPNAQVYIVK 248

Query: 239 --------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                         R  H   ++  I   +  +   E     ++L K     E A NLF+
Sbjct: 249 GGENNVITKMNELSRKNHAENKKTGIMCMSKDVDKFE-CDYVVDLGK--DYNEVAANLFD 305

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +   D++    +      + G+G AI NRL ++AA R
Sbjct: 306 ALIKMDEAKMDIVYSVCFESCGVGQAIMNRLLKSAAYR 343


>gi|268317144|ref|YP_003290863.1| Sua5/YciO/YrdC/YwlC family protein [Rhodothermus marinus DSM 4252]
 gi|262334678|gb|ACY48475.1| Sua5/YciO/YrdC/YwlC family protein [Rhodothermus marinus DSM 4252]
          Length = 317

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/318 (31%), Positives = 157/318 (49%), Gaps = 15/318 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +A PTETVYGL  D+ NP A+R+++E K RP  NPLI H+  + 
Sbjct: 9   TTDVHEAAALIRRGELVAFPTETVYGLGADAFNPEAVRKIFEAKGRPLDNPLIVHIVHLD 68

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +      V   +    + F+PGPLTLVL      D+    TA L T   R+P     + 
Sbjct: 69  QLAHLVRDVPEAARRFMERFFPGPLTLVLPRHP--DVPDEVTAGLPTVGVRMPRHPVAQA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +E  G P+A PSANRSG+ S T  + +  + +   I  I+ G  S +GLEST+V+    
Sbjct: 127 FLEACGTPVAAPSANRSGRPSPTRWEAVY-ADLNGRIACILQGDRSDMGLESTVVDCTGS 185

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIH 242
           + V +LR G + +E L+  +        + +   +SPG    HYAP+++V L        
Sbjct: 186 EPV-VLRAGAVPLEALREVVPETRLVGDETSLKARSPGTRYRHYAPQARVVLVDHPDEAV 244

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +PR A I            A           ++  A+ LF++ +  D    + I    +
Sbjct: 245 PDPRHAYIGLTPPAHPEAFGACCVCP-----DVETYAYELFDFFRRCDAQNCTRIYAQRV 299

Query: 303 PNHGLGIAINNRLERAAA 320
           P+ GLG+A+ +RLERAA+
Sbjct: 300 PHTGLGLALMDRLERAAS 317


>gi|170750228|ref|YP_001756488.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656750|gb|ACB25805.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium radiotolerans
           JCM 2831]
          Length = 332

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 127/303 (41%), Positives = 169/303 (55%), Gaps = 4/303 (1%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A PTETVYGL  D+ +P A+  ++  K RP  NPLI H+ D          D  + 
Sbjct: 32  GRLVAFPTETVYGLGADATDPAAVTGIFAAKARPRFNPLISHLPDAVAALAEGVFDAPAR 91

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            LA+ FWPGPLTLV+   + T +  L  A L +   RVP     + L+   G P+A PSA
Sbjct: 92  RLAEAFWPGPLTLVVPAHTGTRVCDLVRAGLPSLALRVPAHPLARDLLAEVGRPVAAPSA 151

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG++S T   H+L   +   I  ++DGG + +G+EST+V        R+LRPGG+   
Sbjct: 152 NWSGRVSPTRAAHVL-DDLAGRISAVLDGGDTPVGVESTVVACLG-GPPRLLRPGGITRA 209

Query: 201 TLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
            L+  + ++        +  P  PGML SHYAPR++VRL A+ V P EA + FG  P   
Sbjct: 210 ALRDVLGLDPAAPEAADADRPAGPGMLASHYAPRARVRLDAVRVEPGEAALLFGPRPPAG 269

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            E A  SLNLS  G   EAA  LF  ++  D SGA +IA + IP  GLG AI +RL RAA
Sbjct: 270 HETARASLNLSPAGDPAEAAARLFGALRDLDASGAETIAVAPIPEDGLGEAIRDRLARAA 329

Query: 320 APR 322
           APR
Sbjct: 330 APR 332


>gi|154500228|ref|ZP_02038266.1| hypothetical protein BACCAP_03892 [Bacteroides capillosus ATCC
           29799]
 gi|150270960|gb|EDM98234.1| hypothetical protein BACCAP_03892 [Bacteroides capillosus ATCC
           29799]
          Length = 341

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 99/328 (30%), Positives = 162/328 (49%), Gaps = 20/328 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E L  G  + IPTETVYGL     +P A+  ++  K RP  NPLI HV    
Sbjct: 8   AQDIQEAAEILKRGGLLGIPTETVYGLGASGLDPEAVAHIFAAKGRPQDNPLILHVPSAD 67

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++++   +   +  LA+ FWPGP+T++L       +    TA L T   R P    T+ 
Sbjct: 68  WLERYCEDIPDAAYALAERFWPGPMTMILRRKPI--VPDAVTAGLDTVGMRCPDHGVTRA 125

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I   G P+A PS N SG+ S T+   +L   +  +I  I+DGG   +G+ESTI+++   
Sbjct: 126 IIAAAGVPVAAPSGNTSGRPSPTSAADML-EDMDGKIDGIVDGGPCTVGVESTIIDLTL- 183

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAI 241
              R+LRPGG+ +E L+ A+  V+++  V     +   P++PGM   HYAP + V +   
Sbjct: 184 TPPRLLRPGGVTLEQLRDALGEVDVDQAVTRLMGKDEHPRAPGMKYRHYAPEAPVTVVKG 243

Query: 242 HVNPREALIRF------GNVPIKNIE---NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
             +   A IR       G +         +      +      +E A  +F+ ++  D +
Sbjct: 244 PADKTAAYIRDHLGPKSGVICFDEFAGDFSGYPVETMGPAADKEEQARRVFDALRYFDST 303

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
               I      + G+G+A++NRL +AA 
Sbjct: 304 DVEEIWSQCPDDGGIGLAVSNRLNKAAG 331


>gi|191638152|ref|YP_001987318.1| Translation factor SUA5 [Lactobacillus casei BL23]
 gi|239631746|ref|ZP_04674777.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301066211|ref|YP_003788234.1| putative translation factor [Lactobacillus casei str. Zhang]
 gi|190712454|emb|CAQ66460.1| Translation factor SUA5 [Lactobacillus casei BL23]
 gi|239526211|gb|EEQ65212.1| translation factor SUA5 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300438618|gb|ADK18384.1| Putative translation factor (SUA5) [Lactobacillus casei str. Zhang]
 gi|327382182|gb|AEA53658.1| Putative translation factor (SUA5) [Lactobacillus casei LC2W]
 gi|327385379|gb|AEA56853.1| Putative translation factor (SUA5) [Lactobacillus casei BD-II]
          Length = 333

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 104/324 (32%), Positives = 164/324 (50%), Gaps = 15/324 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D  
Sbjct: 7   ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAE 66

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           MV ++A++ PL+  L + FWPGPLT++L++L    +    T  L+TA FR P    T+KL
Sbjct: 67  MVGQYATITPLAAKLMEAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I T G P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ES I+++    
Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTP 184

Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAP-------RSQVRL 238
              ILRPG +  + L+  I       + V +   P++PGM   HYAP           + 
Sbjct: 185 PA-ILRPGAIGPDELEPLIGHVDTAAHHVGQNEAPKAPGMKYKHYAPAAQVVVVDDPAQF 243

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASS 296
            A     ++    FG +    I     ++ + S    ++ AA  LF  ++  D     + 
Sbjct: 244 SAAVAWAKQTGQVFGLLATDAILAQYPTIPSYSLGKDVQSAAHALFAGLRWFDLHPDVTL 303

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           +   +     L  A  NRL ++A 
Sbjct: 304 VLAQAFSKTELSAAYMNRLLKSAG 327


>gi|170017814|ref|YP_001728733.1| putative translation factor (SUA5) [Leuconostoc citreum KM20]
 gi|169804671|gb|ACA83289.1| Putative translation factor (SUA5) [Leuconostoc citreum KM20]
          Length = 336

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 106/338 (31%), Positives = 170/338 (50%), Gaps = 17/338 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    +T+ + +++A   L AG  +A PTETVYGL  D+ +  A+++++  K RPA NPL
Sbjct: 2   MNTERLTNQD-IQRAGVLLKAGEVVAFPTETVYGLGADATHEEAVQKVFVAKGRPADNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I  V+D   +    SV   +  L   FWPG LT++L +     +  + T  L TA FR+P
Sbjct: 61  IMTVADAEQLTNFVSVSEAAKALIDAFWPGSLTIILPIKPG-QVSMMVTGGLDTAAFRLP 119

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T+ +I   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST
Sbjct: 120 DNETTRAIIREAGVPIVGPSANTSGKPSPTTAQHVW-HDMQGKIAAIVDDGPTQVGVEST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRS 234
           +V++  +    ILRPG +  + L+  + + +          +  TP++PGM   HYAP  
Sbjct: 179 VVDMAADVP-TILRPGAVTQQQLEDVLGIHVLDATSTMSVADDVTPKAPGMKYRHYAPDK 237

Query: 235 QV----RLRAIHVNPREALIRFGNVPIKNIENAIISL--NLSKTGKLKEAAFNLFNYMKI 288
           QV    RL A+ +    A         + ++   + L    S    L+ A   LF  ++ 
Sbjct: 238 QVVMFDRLDALALKVSLAPTDVVMAQEETLQRMALPLAQTWSLGTTLENATEQLFAGLRY 297

Query: 289 ADD-SGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            DD +   +I    +P  GLG A NNRL +A+  +   
Sbjct: 298 YDDVAHVKTIYVEKMPPIGLGKAFNNRLGKASGNQEYQ 335


>gi|167750774|ref|ZP_02422901.1| hypothetical protein EUBSIR_01752 [Eubacterium siraeum DSM 15702]
 gi|167656209|gb|EDS00339.1| hypothetical protein EUBSIR_01752 [Eubacterium siraeum DSM 15702]
          Length = 337

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 115/338 (34%), Positives = 165/338 (48%), Gaps = 17/338 (5%)

Query: 1   MQI-MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M+  +       L +A E +  G  +AIPTETVYGLA D+ NP A  ++++ K RP  NP
Sbjct: 1   MKTEIKKPSYEVLCEAAELIKKGEVVAIPTETVYGLAADAYNPDACAKIFKAKGRPQDNP 60

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H+ D+ M+K     + PL+L LA+ FW G LT++        +   ++  L T   R
Sbjct: 61  LIIHICDLDMLKNSVKEIPPLALTLAEHFWSGSLTMIFP--KKDIVPDTTSGGLDTVAVR 118

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P    T  LI+  G PLA PSAN SG  S T  +H+  + +   IPLIIDGG  K G+E
Sbjct: 119 MPDNEDTLNLIKMCGVPLAAPSANLSGSPSPTTAQHVY-ADMNGRIPLIIDGGECKNGVE 177

Query: 178 STIVNVQCEKK-VRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAP 232
           ST++        +++LRPG +  E L R    E +  V    DE     SPG+   HY+P
Sbjct: 178 STVICFTDGGTGIKVLRPGVITAEMLSRFAKTETDKNVFAKPDENEKVISPGVKYKHYSP 237

Query: 233 RSQVRLRAIHVNPREA------LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
           R+ + +     + + A              I   E  I    +S     +E A NLF  +
Sbjct: 238 RADITIIETDSDEKLAEFLNSKNDGGTYGVIFGSEKGIEVPTISYGSTAQEQAHNLFAVL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
           +  D+ GA           G+G A+ NRL RAAA +  
Sbjct: 298 RKTDELGAKRAYVRCPEKTGVGTAVYNRLLRAAAFKTI 335


>gi|23012172|ref|ZP_00052324.1| COG0009: Putative translation factor (SUA5) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 329

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 119/296 (40%), Positives = 166/296 (56%), Gaps = 3/296 (1%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PTETVYGL  D+ +P A+  +Y  K RP  NPLI HV+           D  +  LA  F
Sbjct: 36  PTETVYGLGADATDPEAVAAIYAAKGRPHFNPLIAHVATHEAALAEGVFDAAAQLLATAF 95

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI 146
           WPGPLTLV+ +     +  L+ A L +   RVP     + L+   G P+A PSANRSG++
Sbjct: 96  WPGPLTLVVPVSPGGSVCELARAGLDSVALRVPAHGLARDLLARVGRPVAAPSANRSGRV 155

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           S T+  H+L + +   I  ++DGG   +G+ES++V        R+LRPGG+  E +   +
Sbjct: 156 SPTSADHVL-ADLDGRIDAVLDGGECPVGVESSVVACLGGTP-RLLRPGGVTREAIAALL 213

Query: 207 SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIIS 266
             +     D  + P  PG+L SHYAPR+ VRL A  + P EA + FG    + ++ A   
Sbjct: 214 GFDPAAAGDPGAQPVGPGLLASHYAPRAGVRLDATAIAPGEAALLFGAFRPEGLKRAAAV 273

Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +LS+ G   EAA  LF  ++  D SGA+ IA + +P  GLG AIN+RL RAAAPR
Sbjct: 274 ESLSERGDPAEAAARLFGALRRLDASGAAVIAVAPVPGEGLGEAINDRLRRAAAPR 329


>gi|313905026|ref|ZP_07838396.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cellulosolvens 6]
 gi|313470096|gb|EFR65428.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cellulosolvens 6]
          Length = 355

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 112/348 (32%), Positives = 168/348 (48%), Gaps = 28/348 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
              D  AL+KA E L  G  +A PTETVYGL  ++ +P A RR+Y  K RP+ NPLI H+
Sbjct: 12  DCLDMEALKKAGEILAGGGLVAFPTETVYGLGGNALDPEASRRIYAAKGRPSDNPLIVHI 71

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +D   +    S +   +  LA  +WPGPLT++ +   +  +   +T  L+T   R+P   
Sbjct: 72  ADWDSLTPIVSRIPEKAKKLADAYWPGPLTMIFE--KSELVPYETTGGLETVAVRLPANK 129

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              ++I   G  +A PSAN SG+ S T   H+    +   I +IIDGG   IGLESTIV+
Sbjct: 130 VAVEMIRQAGGYVAAPSANTSGRPSPTLASHV-EEDLGDRIDMIIDGGQVNIGLESTIVD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPRSQV-- 236
              E  V ILRPG L  E L+  +  V ++  +   +T   P++PGM   HYAP++ +  
Sbjct: 189 FTEEIPV-ILRPGFLNKEMLEEVLGEVRIDPGIMAENTHIRPKAPGMRYKHYAPKADLAI 247

Query: 237 ----------RLRAIHVNPREALIRFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLF 283
                     ++R +         R G +  +   +     I   +      +  A +L+
Sbjct: 248 VEGAPAAVFSKIRELVREGIAKEQRVGVICTEESRSEYPEGIVRCIGSRADDRTIARHLY 307

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP---RNQSQRI 328
             ++  D  G  +I   S     +G AI NRL +AA     R  S+ I
Sbjct: 308 EILRDFDADGVDAIYSESFETPRMGQAIMNRLIKAAGHEVIRAGSEDI 355


>gi|160947260|ref|ZP_02094427.1| hypothetical protein PEPMIC_01193 [Parvimonas micra ATCC 33270]
 gi|158446394|gb|EDP23389.1| hypothetical protein PEPMIC_01193 [Parvimonas micra ATCC 33270]
          Length = 341

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 101/342 (29%), Positives = 166/342 (48%), Gaps = 31/342 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T  N + ++ + +     +AIPTETVYGL  +  +  A+ ++++ K RP  NPLI
Sbjct: 3   EILKPTREN-IERSAKLILNDKIVAIPTETVYGLGANGLSDIAVSKIFKAKNRPQDNPLI 61

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+SD  M++     ++         FWPGPLT+V+       I    +  L T   R+P
Sbjct: 62  LHISDYDMMENLVYELNDEIKEFLNHFWPGPLTVVM--KKKDIIPDAISCGLDTVAIRMP 119

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                +  I+  G P+A PSAN SG+ S T  + + +  +  +I +I+DGG+  IG+EST
Sbjct: 120 NNEIARSFIKQCGVPIAAPSANISGKPSPTTAEDVFTD-MNGKISVILDGGLCNIGIEST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----ETSTPQSPGMLKSHYAPRS 234
           ++++   K   ILRPG    E     +  E E  +D     E + P+SPG    HYAP +
Sbjct: 179 VLDLTK-KPYTILRPGFYTKED---FLKYEDEILIDDAIVTENTIPKSPGQKYKHYAPNA 234

Query: 235 QVRLRAIHVNPR-----------EALIRFG----NVPIKNIENAIISLNLSKTGKLKEAA 279
           +V + +     +              ++ G    +    N+E+  I L+L     LKE +
Sbjct: 235 KVVVISTKDRKKSSMEIEKIIKENKGLKIGIFKFDETFLNVESENI-LSLGSVFDLKEMS 293

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             LF  ++  D+     I        GLG +I NRL+++A+ 
Sbjct: 294 KILFKGLREFDEKNVDLIVVEGCDEKGLGFSIMNRLKKSASG 335


>gi|227535364|ref|ZP_03965413.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186960|gb|EEI67027.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 333

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 104/324 (32%), Positives = 164/324 (50%), Gaps = 15/324 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D  
Sbjct: 7   ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAD 66

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           MV ++A++ PL+  L + FWPGPLT++L++L    +    T  L+TA FR P    T+KL
Sbjct: 67  MVGQYATITPLAAKLMEAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I T G P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ES I+++    
Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTP 184

Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAP-------RSQVRL 238
              ILRPG +  + L+  I       + V +   P++PGM   HYAP           + 
Sbjct: 185 PA-ILRPGAIGPDELEPLIGHVDTAAHHVGQNEAPKAPGMKYKHYAPAAQVVVVDDPAQF 243

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASS 296
            A     ++    FG +    I     ++ + S    ++ AA  LF  ++  D     + 
Sbjct: 244 SAAVAWAKQTGQVFGLLATDAILAQYPTIPSYSLGKDVQSAAHALFAGLRWFDLHPDVTL 303

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           +   +     L  A  NRL ++A 
Sbjct: 304 VLAQAFSKTELSAAYMNRLLKSAG 327


>gi|284036313|ref|YP_003386243.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
 gi|283815606|gb|ADB37444.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
          Length = 324

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 121/313 (38%), Positives = 174/313 (55%), Gaps = 11/313 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           KA EFL++G  + IPTETVYGLA ++ +  AI R++++K RP+ +PLI H   I  V + 
Sbjct: 10  KAKEFLESGNVVGIPTETVYGLAGNALDTNAILRIFQVKNRPSFDPLIVHTDSIDKVSQF 69

Query: 74  ASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
            +  P  +  LA+ FWPGPLTL+L     + I  L T+ L +   R+P    T  L+ + 
Sbjct: 70  ITDIPEPARKLAEAFWPGPLTLLLP--KQSLIPDLVTSGLPSVAVRIPNHPLTLDLLRSL 127

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             PLA PSAN  G IS T  +H+ +  +  ++P I+DGG + +G+ESTIV  +      +
Sbjct: 128 DFPLAAPSANPFGYISPTTAQHV-ADQLGDQVPYILDGGPAGVGIESTIVGFENNLP-TV 185

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
            R GG+ +E ++  I   +      TS PQ+PGML SHYAPR  + L +   +P+    R
Sbjct: 186 FRLGGMALEQIEAVIG-SVSVRTHSTSNPQAPGMLSSHYAPRKPLMLLSPGESPQPGE-R 243

Query: 252 FGNVPIKNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
            G +  +     I   N   LS TG L EAA NLF  ++  D      I    +PN GLG
Sbjct: 244 IGALAFREPFGGIPISNQRVLSPTGDLNEAAKNLFACLRELDTLSVDLIYAEPLPNTGLG 303

Query: 309 IAINNRLERAAAP 321
            A+N+RL RA+ P
Sbjct: 304 SAMNDRLRRASVP 316


>gi|227431144|ref|ZP_03913200.1| Sua5/YciO/YrdC/YwlC family protein [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227353096|gb|EEJ43266.1| Sua5/YciO/YrdC/YwlC family protein [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 337

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 104/330 (31%), Positives = 167/330 (50%), Gaps = 16/330 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  N + +A   +  G  +A PTETVYGL  D+ N +AI++++  K RPA NPLI  V+D
Sbjct: 8   TTKNDIEEASRLIQNGEVVAFPTETVYGLGADATNESAIKKVFVAKGRPADNPLIMTVAD 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
            + + +  ++   +  L   FWPG LT++L +    ++  L T  L+T  FR+P     +
Sbjct: 68  AAQLDEFVTISDQARGLMDHFWPGSLTIILPIKPG-NVSMLVTGGLQTVAFRLPANDAAR 126

Query: 127 -LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST++++  
Sbjct: 127 TLIRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQNKIAGIVDDGPTQVGVESTVIDMSI 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV---- 236
              + ILRPG +    L+  + +++       S     TP++PGM   HYAP   V    
Sbjct: 186 STPI-ILRPGAVTQPQLEEVLQMKVIDATSTESVASNVTPKAPGMKYRHYAPDKNVVMFD 244

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIA-DDSG 293
            L A+ +    A           IE   ++ +   S    L+ A   LF  ++   DDS 
Sbjct: 245 ELDALELKQVLAPNDVVMAKDDMIEKMALTNHQAWSLGNTLETATEQLFAGLRFYDDDSQ 304

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            ++I    +P  G+G A NNRL +AA  + 
Sbjct: 305 ITTIYVQKMPPIGIGKAFNNRLGKAAGNQE 334


>gi|220927715|ref|YP_002504624.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10]
 gi|219998043|gb|ACL74644.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium cellulolyticum H10]
          Length = 359

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 106/347 (30%), Positives = 176/347 (50%), Gaps = 31/347 (8%)

Query: 2   QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q++ I     + NAL+ A E L  G+ +A PTETVYGL  ++ +  A+ ++++ K RP+ 
Sbjct: 4   QVIKIDAENINENALKPAAEALKQGMTVAFPTETVYGLGANALDGIAVSKIFKAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++D   V +  S  P  ++ L    WPGPLTLV+    ++ I    TA L T  
Sbjct: 64  NPLIVHIADREKVSELTSFIPDKAVALMDKLWPGPLTLVM--KKSSVIPKEITAGLDTVG 121

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P      +LI+  G P+A PSAN SG+ S T  +H+L   +  +I +I+D G S++G
Sbjct: 122 IRMPEHPVALELIKLAGIPVAAPSANVSGKPSPTAAQHVL-DDLDGKIEMIVDAGSSRVG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE-----LEYCVDETSTPQSPGMLKSHY 230
           LEST+++V  +  V +LRPGG+    ++  I        +   V   + P+SPGM   HY
Sbjct: 181 LESTVLDVSSDPPV-LLRPGGVTPCQIEEIIGHIEIDKTIMNKVTADNVPKSPGMKYKHY 239

Query: 231 APRSQVRLRAIHVNPREALIRFGNVPIKNIENAII----------------SLNLSKTGK 274
           +P++ V +       ++A +          E   +                ++++     
Sbjct: 240 SPKAHVIIVESSDINKQAEVMCYLAEKYKKEGKKVGVCATDQTFDKYCLYDTISMGDRNH 299

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  A +LF+  +  D   A  I   ++  +G+G+AI NR+ +AA  
Sbjct: 300 PETIASSLFSIFREFDGRRADIILAEAVDQNGVGLAIMNRMVKAAGY 346


>gi|255658857|ref|ZP_05404266.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM
           20544]
 gi|260849260|gb|EEX69267.1| Sua5/YciO/YrdC/YwlC family protein [Mitsuokella multacida DSM
           20544]
          Length = 352

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/346 (32%), Positives = 165/346 (47%), Gaps = 31/346 (8%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I++ITD  A    L +A + L  G  +A PTETVYGL  +  +  A  R+YE K RP+ 
Sbjct: 4   EIITITDVKAQREELARAGKVLRGGGLVAFPTETVYGLGANGLDAAACARIYEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI HVSD +MV+   A V P++  L   F PGP+TL+L   +   +    T  L T  
Sbjct: 64  NPLILHVSDRAMVEMIAAEVTPMAEKLLAAFMPGPITLILRRKAI--VPDRITGGLDTVG 121

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + +I   G P+A PSAN SG+ S T    +L   +   IPLI+DGG    G
Sbjct: 122 IRMPEHPVARAMIRAAGVPIAAPSANISGRPSPTTAASVLRD-MDGRIPLILDGGPCHFG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +ESTIV+      V ILRPG +  E L   +         V   + P++PGM   HYAP+
Sbjct: 181 VESTIVDCTGPVAV-ILRPGAITREMLTEVLGGCKLDPALVGADTVPRAPGMKYKHYAPK 239

Query: 234 SQVRLRAIHVNPREALIR------------FGNVPIKNIENAIISL-------NLSKTGK 274
           + + L         A  R             G +    +  ++  L       +    G 
Sbjct: 240 APLTLLEGDAAKMAAAFRRQVRRLQGEGHTVGVLASHEVCESLQDLVPEELLKDYGPQGD 299

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           L   A +++  +   +D+ A  +        GLG+AI NRL +A+A
Sbjct: 300 LLAIAAHIYEELIAFNDTQADVLLGEGTTEKGLGLAIMNRLHKASA 345


>gi|307595866|ref|YP_003902183.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551067|gb|ADN51132.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta distributa DSM
           14429]
          Length = 375

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 99/343 (28%), Positives = 162/343 (47%), Gaps = 33/343 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ +++A +++  G  +A PTETVYGL  D+ N  A  ++++ K RP  NPLI H+SD+
Sbjct: 28  DNSIIKEASDYIKNGYLVAFPTETVYGLGADTFNGEACLKIFKAKGRPPDNPLIVHISDM 87

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + + + A  +  +   + +  WPGPLTL+L    + D+    T    T   R P      
Sbjct: 88  NELDRVAIDIPEIVFPVIRKAWPGPLTLILP--KSPDVPKEVTGGRNTVAVRSPAHPVAL 145

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQ 184
            LI++   P+A PSAN+SG+ S T  +HI+       + +I +D G +  G+ESTIV+V 
Sbjct: 146 ALIKSSRTPIAAPSANKSGRPSPTLAEHIIEDYANDNVEMILLDAGPTFFGVESTIVDVT 205

Query: 185 CEKKVRILRPGGLEIETLK-----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-- 237
               V +LRPG   IE L+       +  E    + E     +PGM   HYAPR+Q+   
Sbjct: 206 RNPPV-LLRPGPFTIEELRSLFNTEIVVPEFARGLGEADVALAPGMKYKHYAPRTQLIVV 264

Query: 238 -----------LRAIHVNPREALIRFGNVPIKNIE---------NAIISLNLSKTGKLKE 277
                      LR + +N     ++   +  K            N +  + +        
Sbjct: 265 ECEKYDSLIKLLRDVALNYLNKKLKVALLITKETASELMKYPEINELPIIIMGYRENPYT 324

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            A +LF+ ++  D           I   G+G+A+ NRL +A+ 
Sbjct: 325 IAASLFDSLRSLDRLNVDLGIAEGIEERGIGLAVMNRLRKASG 367


>gi|154251230|ref|YP_001412054.1| Sua5/YciO/YrdC/YwlC family protein [Parvibaculum lavamentivorans
           DS-1]
 gi|154155180|gb|ABS62397.1| Sua5/YciO/YrdC/YwlC family protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 320

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/313 (38%), Positives = 173/313 (55%), Gaps = 15/313 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E +  G  +A PTETVYGL  D+ +  A+ R++E K RP  NPLI HV+D  + +K+   
Sbjct: 17  ELIREGKLVAFPTETVYGLGADASDEKAVARIFEAKGRPRFNPLIVHVADAQVAEKYVVF 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135
              +  LA+ FWPG LTLVL   +   +  L +A L T   RVP     + L+E    P+
Sbjct: 77  SAEAEALARHFWPGGLTLVLPRRADAKLSLLVSAGLDTVAIRVPAHETAQALLEAAKRPI 136

Query: 136 AIPSANRSGQISITNVKHILSSSICK--EIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           A PSAN SG++S T   H++  S+     + +++DGG  ++GLES+++    +    +LR
Sbjct: 137 AAPSANASGKVSPTQAGHVM-ESLGHSDLLAMVLDGGACRLGLESSVIGF-PQGIPTLLR 194

Query: 194 PGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           PG +  E ++  +   L         +   SPG L+SHYAP + +RL A    P E L+ 
Sbjct: 195 PGAVAREEIEAVLGGRLADADAAAGEAGRASPGQLESHYAPGAPLRLDAAEAGPDEVLLG 254

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGLGIA 310
           FG         A  S+NLS +G L EAA NLF  ++  D  +G   IA S IP  GLG A
Sbjct: 255 FGP-------EAKSSMNLSASGDLTEAAANLFAMLRALDATAGGKRIAVSPIPMEGLGEA 307

Query: 311 INNRLERAAAPRN 323
           IN+RL+RAAAPR 
Sbjct: 308 INDRLKRAAAPRG 320


>gi|85709789|ref|ZP_01040854.1| putative translation factor [Erythrobacter sp. NAP1]
 gi|85688499|gb|EAQ28503.1| putative translation factor [Erythrobacter sp. NAP1]
          Length = 315

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 127/319 (39%), Positives = 182/319 (57%), Gaps = 14/319 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+S  D+  + +A + L +G  +A+PTETVYGLA  + +  A+ ++Y  K RP  NPLI
Sbjct: 8   EIISP-DAAGIARAADHLTSGELVAVPTETVYGLAARADSADAVAKIYAAKGRPDFNPLI 66

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            HV DI   +  A  D  ++ L + FWPGPLTLVL + S   I    TA L T   R P 
Sbjct: 67  VHVRDIEQAQGLAEFDDRAIDLVERFWPGPLTLVLPIRSDAAIAKAVTAGLPTIGLRQPS 126

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + ++++ G PLA PSANRS  IS T  +H+ ++S+    PLI+DGG S+ GLESTI
Sbjct: 127 HKVMQAVLKSVGVPLAAPSANRSEHISPTRAEHV-TASLGDNAPLILDGGPSQSGLESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V ++      +LRPG +  ETL+R +  E E    E S+ ++PG ++ HY+P   +RL A
Sbjct: 186 VALRQSGDWNLLRPGPVTKETLERILGPESEI---EGSSIEAPGQMERHYSPGKPMRLSA 242

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             V   E  I FG++            NLS+ G L EAA  L+  + +A  S   +I+ +
Sbjct: 243 SEVAQEEFFIGFGSLEGD--------CNLSEAGDLNEAAARLYECLHLAAASDKPAISVA 294

Query: 301 SIPNHGLGIAINNRLERAA 319
            IP   +G AIN+RL RAA
Sbjct: 295 PIPYGEVGRAINDRLRRAA 313


>gi|116494653|ref|YP_806387.1| putative translation factor (SUA5) [Lactobacillus casei ATCC 334]
 gi|116104803|gb|ABJ69945.1| translation factor SUA5 [Lactobacillus casei ATCC 334]
          Length = 333

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 104/324 (32%), Positives = 164/324 (50%), Gaps = 15/324 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D  
Sbjct: 7   ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVGKVYAAKGRPSDNPLIVTVADAD 66

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           MV ++A++ PL+  L + FWPGPLT++L++L    +    T  L+TA FR P    T+KL
Sbjct: 67  MVGQYATITPLAAKLMQAFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDNALTRKL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I T G P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ES I+++    
Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLDGKIAGVLDDGPTQVGVESAIIDLTVTP 184

Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAP-------RSQVRL 238
              ILRPG +  + L+  I       + V +   P++PGM   HYAP           + 
Sbjct: 185 PA-ILRPGAIGPDELEPLIGHVDTAAHHVGQNEAPKAPGMKYKHYAPAAQVVVVDDPAQF 243

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASS 296
            A     ++    FG +    I     ++ + S    ++ AA  LF  ++  D     + 
Sbjct: 244 SAAVAWAKQTGQVFGLLATDAILAQYPTIPSYSLGKNVQSAAHALFAGLRWFDLHPDVTL 303

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           +   +     L  A  NRL ++A 
Sbjct: 304 VLAQAFSKTELSAAYMNRLLKSAG 327


>gi|254445927|ref|ZP_05059403.1| Sua5/YciO/YrdC/YwlC family protein, putative [Verrucomicrobiae
           bacterium DG1235]
 gi|198260235|gb|EDY84543.1| Sua5/YciO/YrdC/YwlC family protein, putative [Verrucomicrobiae
           bacterium DG1235]
          Length = 327

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/326 (36%), Positives = 177/326 (54%), Gaps = 13/326 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T+ N LR+  +FL  G  + +PTETVYGLA ++ +P A  +++E+K+RPA +PLIC
Sbjct: 4   ILQPTEEN-LRELRKFLLFGGLVGVPTETVYGLAANAFDPEACAKIFEVKQRPANDPLIC 62

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           HVS    ++     +PL+L LAK FWPGPLT VL     + I  + TA L +   R    
Sbjct: 63  HVSGADALEDICHANPLALRLAKRFWPGPLTFVLP--KKSKIPNIVTAGLDSVAVRCSAH 120

Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +L+E    P+A PSAN    IS T  +H+  + +  +I  I+DGG    G+ESTI+
Sbjct: 121 PDFHRLVEQCDFPIAAPSANPFAYISPTTAQHV-QAGLGSKITFILDGGSCSFGVESTIL 179

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAPRSQVR 237
           +++ E   RILR G L  E ++  +   +E       DE+    +PG L  HY+PR+ + 
Sbjct: 180 DLRDETNPRILRYGALPAEDIEVELGRSIEKPTFITADESVQHLAPGALPKHYSPRTPLE 239

Query: 238 LRAIHVNPREALIRFGNVPI----KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           LR    N   A ++     +               LS+ GKL E A NL+  ++  D+SG
Sbjct: 240 LRGGISNAELASLKNDQAALLLARPEGSFPGNVHWLSENGKLSEIASNLYAKLREIDESG 299

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
            ++I     P  GLG+AIN+RL RA+
Sbjct: 300 YATIFAEEAPELGLGLAINDRLRRAS 325


>gi|116618871|ref|YP_819242.1| translation factor SUA5 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097718|gb|ABJ62869.1| translation factor SUA5 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 337

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 105/330 (31%), Positives = 166/330 (50%), Gaps = 16/330 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  N + +A   +  G  +A PTETVYGL  D+ N +AI++++  K RPA NPLI  V+D
Sbjct: 8   TTKNDIEEASRLIQNGEVVAFPTETVYGLGADATNESAIKKVFVAKGRPADNPLIMTVAD 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
            + + +  ++   +  L   FWPG LT++L +     +  L T  L+T  FR+P     +
Sbjct: 68  AAQLDEFVTISDQARGLMDHFWPGSLTIILPIKPGK-VSMLVTGGLQTVAFRLPANDAAR 126

Query: 127 -LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+  PSAN SG+ S T  +H+    +  +I  I+D G +++G+EST+V++  
Sbjct: 127 TLIRAAGVPIVGPSANTSGKPSPTTAQHVW-HDMQNKIAGIVDDGPTQVGVESTVVDMSI 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQVR--- 237
              + ILRPG +    L+  + +++       S     TP++PGM   HYAP   V    
Sbjct: 186 STPI-ILRPGAVTQPQLEEVLQMKVIDATSTESVASNVTPKAPGMKYRHYAPDKNVVMFD 244

Query: 238 -LRAIHVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIA-DDSG 293
            L A+ +    A           IE   ++ +   S    L+ A   LF  ++   DDS 
Sbjct: 245 GLDALELKQVLAPNDVVMAKDDMIEKMALTNHQAWSLGNTLETATEQLFAGLRFYDDDSQ 304

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            ++I    +P  G+G A NNRL +AA  + 
Sbjct: 305 ITTIYVQKMPPIGIGKAFNNRLGKAAGNQE 334


>gi|14602037|ref|NP_148583.1| putative translation factor [Aeropyrum pernix K1]
 gi|5106101|dbj|BAA81412.1| putative translation factor [Aeropyrum pernix K1]
          Length = 367

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 109/350 (31%), Positives = 168/350 (48%), Gaps = 36/350 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +A PTETVYGL  D+ NP A  R++E+K RP  NPLI HVS +
Sbjct: 22  DRRAIERAAEVLRRGGLVAFPTETVYGLGADALNPRAAARIFEVKGRPPDNPLIVHVSSL 81

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            M +  A +   +L L +  WPGPLTLVL       +  + TA L+T   R+P      +
Sbjct: 82  EMARTVAEIPGKALRLVEKLWPGPLTLVLPRKPV--VPDIVTAGLETVAVRMPAHKVALE 139

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G P+A PSAN SG+ S T+ +H++   +   + +I+D G +  G+ESTI+++   
Sbjct: 140 LVKAAGRPVAAPSANPSGRPSPTSGEHVIRD-LDCMVDVILDAGETYFGVESTIIDLTRT 198

Query: 187 KKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLR-- 239
             V +LRPG + +E L+R +  ++        +     P +PGM   HYAP + + L   
Sbjct: 199 PPV-LLRPGPIPVEVLERLLEEKILVPPEARGLRAADRPLAPGMKYRHYAPDTPLILVDT 257

Query: 240 -----------AIHVNPREALIRFGNVPIKNIENAI------------ISLNLSKTGKLK 276
                      A+    R   +R   V    + + +                L       
Sbjct: 258 SPGAVERIVEAAVREVARARGLRVALVGPDELVDVVALLLRLRGVEPAAIFRLGPLADTT 317

Query: 277 EAAFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            AA  LF  ++  D+ G          P  G+G+A+ NRL +AA+ R  +
Sbjct: 318 VAARRLFKTLRRIDELGNIDVAIVLPFPERGIGLAVMNRLRKAASRRVGA 367


>gi|325479327|gb|EGC82423.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 344

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/334 (30%), Positives = 164/334 (49%), Gaps = 22/334 (6%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
              D   ++KA   L  G  +AIPTETVYGL  +  +  A R+++E K RPA NPLI H+
Sbjct: 11  DNIDQKIIKKAANLLKDGKLVAIPTETVYGLGANGLDDLACRKIFETKNRPADNPLILHI 70

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           S+I M+      V   +  L    WPGPLT++     +  I    TA   T   R P   
Sbjct: 71  SNIDMLYNLVEGVSDEARKLFD-LWPGPLTMIF--KKSKLIPDTVTAGGDTVAIRFPVDK 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             +++I     P+A PSAN SG+ S TN        +  +IPLI+DGG SKIG+EST+++
Sbjct: 128 IAREIISEANLPIAAPSANISGRPSPTNAVDCFFD-LNGKIPLIVDGGESKIGIESTVID 186

Query: 183 VQCEKKVRILRPGGLEIETLKRAI-SVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +  +    ILRPG   +E L+  + +V L+   VD+   P+SPG    HYAP++++++  
Sbjct: 187 LSEDVP-TILRPGFYTLEMLREILPNVRLDDALVDDNVVPKSPGQKYKHYAPKARMQVYV 245

Query: 241 IHVNPREALIRFGNVPIKNIENAIISL-------------NLSKTGKLKEAAFNLFNYMK 287
                     +  +   + I   ++               +      L + +  LF+ ++
Sbjct: 246 GKRASDFIYKKAKSYKNQGIHVGVLVFEEDIDRFDEFDRISFGSRNDLNQMSHTLFSSLR 305

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             D  G   I    + ++ LG +I NR++++AA 
Sbjct: 306 QMDKLGVDLILAEGVMDNNLGKSIMNRMKKSAAG 339


>gi|116333897|ref|YP_795424.1| putative translation factor (SUA5) [Lactobacillus brevis ATCC 367]
 gi|116099244|gb|ABJ64393.1| translation factor SUA5 [Lactobacillus brevis ATCC 367]
          Length = 338

 Score =  316 bits (811), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 109/315 (34%), Positives = 158/315 (50%), Gaps = 19/315 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLS 80
           G  +A PTETVYGL  D+ N  A++++Y  K RP+ NPLI HV+    VK  A  +   +
Sbjct: 21  GQLVAFPTETVYGLGADATNEAAVKQVYLAKGRPSDNPLIVHVTGEETVKAFAQPLSDKA 80

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             L K FWPGPLTL+  L     +    T  L TA FR P       LI+  G PL  PS
Sbjct: 81  EALIKAFWPGPLTLIFALQPGK-LSSAVTGGLNTAAFRNPDNAATLALIKAAGVPLVGPS 139

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG+ S T  KH+    +  +I  I+D G +K+G+EST++++  +    ILRPGG+  
Sbjct: 140 ANTSGKPSPTLAKHVY-HDLNGKIAGILDDGPTKVGVESTVLDMSTDIP-TILRPGGVTE 197

Query: 200 ETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP----REALIRFG 253
           E L   I       + V +T  P++PGM   HYAP +QV +     +     + A  + G
Sbjct: 198 EQLAAVIGTVQSSHHKVGKTEVPKAPGMKYKHYAPNAQVTIVDHEADWTAALQWASEQSG 257

Query: 254 NVPIKNIENAIISLNL-------SKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIPNH 305
            + +  ++  + + NL       S    L  A+  LF  ++  D +S  + I        
Sbjct: 258 TIGVMAVDRILQAHNLPDNVEAFSLGHDLTSASHRLFAGLRHFDLESPVTGILAQGFTAE 317

Query: 306 GLGIAINNRLERAAA 320
           GLG A  NRL ++A 
Sbjct: 318 GLGAAYMNRLNKSAG 332


>gi|126664215|ref|ZP_01735207.1| translation factor, SUA5-family protein [Flavobacteria bacterium
           BAL38]
 gi|126623747|gb|EAZ94443.1| translation factor, SUA5-family protein [Flavobacteria bacterium
           BAL38]
          Length = 317

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 112/319 (35%), Positives = 159/319 (49%), Gaps = 14/319 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L +A   L+    I  PTETVYGLA ++ +  AI+++YE+KKRP+ NPLI H+    
Sbjct: 3   STNLDQAVALLNKDQIIGFPTETVYGLAGNAFSDVAIKKIYEVKKRPSFNPLIVHIKSFD 62

Query: 69  MVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +   A+  P   HL    FWPGPLTL+L    T  I  L TANL T   R+P      +
Sbjct: 63  FLDTIATEIPEKAHLLANAFWPGPLTLLLKKQPT--ISNLVTANLDTVAVRIPNHPVALE 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+     PL  PSAN   +IS T  +H+ +     EI +++DGG    G+ESTIV  +  
Sbjct: 121 LLHQLDFPLVAPSANPFTRISPTKAEHV-AQYFENEIDMVLDGGTCTAGVESTIVGFESN 179

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------RA 240
           K V + R G L +E +++ +   +         P++PGM   HY+P+++  L        
Sbjct: 180 K-VIVYRLGALSLEAIEKVVG-PVTIINKNKKNPKAPGMFLKHYSPKTEFILTRNLQSEI 237

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
                ++  +   N    N E       LSK   L EAA NL+  +   D      I   
Sbjct: 238 DWFQDKKVGLLLFNTIQPNFELK-NQFVLSKDSNLNEAAANLYEALHELDKLNLDLIIAE 296

Query: 301 SIPNHGLGIAINNRLERAA 319
             P +GLGI IN+RLERA+
Sbjct: 297 RFPEYGLGITINDRLERAS 315


>gi|217976634|ref|YP_002360781.1| Sua5/YciO/YrdC/YwlC family protein [Methylocella silvestris BL2]
 gi|217502010|gb|ACK49419.1| Sua5/YciO/YrdC/YwlC family protein [Methylocella silvestris BL2]
          Length = 328

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 129/316 (40%), Positives = 181/316 (57%), Gaps = 8/316 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  L +    L A   +A PTETVYGL  D+    A+ R+Y  K RPA NPLI HV+ +
Sbjct: 19  NAAGLAEGARLLQAEKLVAFPTETVYGLGADASCDAAVARIYAAKGRPAFNPLISHVASL 78

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
           +   +H      +  LA+ FWPGPLTLVL + +T  +  L+ A  +T   RVP       
Sbjct: 79  AEASRHGIFSAAARRLAETFWPGPLTLVLPVAATNRVCELARAGRRTVALRVPAHKDALA 138

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANRSG++S    +H+ +  +  E+ LI+DGG   +G+ESTIV    E
Sbjct: 139 LIAAAGLPIAAPSANRSGRVSPVTARHV-AEDLGDEVDLILDGGACHVGVESTIVACLGE 197

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
              ++LRPGGL    ++ A+ + L    + +S   +PG L SHYAPR+ VRL A  + P 
Sbjct: 198 TP-QLLRPGGLSRAVIEEALGLAL-PAREASSEIVAPGALASHYAPRALVRLDAEKLEPG 255

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           EA + FG            +L+LS    L EAA NLF +++  D  G ++IA + IP  G
Sbjct: 256 EAGLDFGG----RFTRGPATLDLSPAADLDEAAANLFAFLRELDAGGPAAIAVAPIPRSG 311

Query: 307 LGIAINNRLERAAAPR 322
           +G AIN+RL+RAAAPR
Sbjct: 312 IGEAINDRLKRAAAPR 327


>gi|193212146|ref|YP_001998099.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobaculum parvum NCIB 8327]
 gi|193085623|gb|ACF10899.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobaculum parvum NCIB 8327]
          Length = 314

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 100/323 (30%), Positives = 163/323 (50%), Gaps = 12/323 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TD     +A   L+ G  +A PTETVYGL  D+ NP A+  ++  K RP+ NPL
Sbjct: 1   MQTL-VTDKP--EEAASHLNRGETVAFPTETVYGLGADAFNPDAVAGIFRAKGRPSDNPL 57

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    V + A  ++  +  L + ++PGPLT+VL    +  +  + +A L T   R 
Sbjct: 58  IVHVASPDRVGEVAREINEAAQRLIERYFPGPLTIVLKKRDS--VPDIVSAGLPTVGVRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      + +    HP+A PSAN SG+ S T+ K +    +  +I  ++ G  S IGLES
Sbjct: 116 PAHSQAAEFLRHCKHPVAAPSANVSGRPSPTDWKTVY-HDLGGKIACLLRGEPSTIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+   +  + +LR G + +E L+  +  +++     E   P+SPG    HY+P +++ 
Sbjct: 175 TIVDCSVKPPL-LLRSGAISLEALQEIVPDIKVATTCREGEAPKSPGQKYRHYSPEAEII 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L     +      +   + + +   A  + +L +   L E A  LF + +  D  G  +I
Sbjct: 234 LVETAPSSLPTEQKAAWIGL-STPPAGATKSL-QCHDLDEYARVLFGFFRTCDAEGIRTI 291

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P  G+G AI +RL +AA 
Sbjct: 292 YCELPPEEGIGRAIRDRLVKAAG 314


>gi|307718163|ref|YP_003873695.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM
           6192]
 gi|306531888|gb|ADN01422.1| hypothetical protein STHERM_c04500 [Spirochaeta thermophila DSM
           6192]
          Length = 330

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 115/328 (35%), Positives = 178/328 (54%), Gaps = 17/328 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++  TD  A+ +A   L  G  +A PTETVYGL  ++ +  A+ R++EIK+RP  +PLI
Sbjct: 5   RVLPATDE-AIEEAARLLREGEAVAFPTETVYGLGANALDAVAVARIFEIKERPLFDPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+++  M+K+    V  ++  L   FWPGPLTLVL       +  + TA L T   R+P
Sbjct: 64  VHIAEEGMLKEVVREVPSIARRLMARFWPGPLTLVLP--KGERVPGIVTAGLPTVGVRMP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LIE  G P+A PSANR G +S T   H+    +   + L++DGG  ++G+EST
Sbjct: 122 AHPVARRLIERAGVPIAAPSANRFGSLSPTRAGHVAG-QLGGRVALVLDGGACEVGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVR 237
           +V V+   +VR+LRPGG+ +E L+ A+          +     ++PGML  HYAP   V 
Sbjct: 181 VVRVEG-GRVRVLRPGGVAVEALEEAVGRGAVVVGGPEREGAQEAPGMLPWHYAPSVPVV 239

Query: 238 LRAIHVNPR------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           +      P         L+ +  VP +    A+    LS  G L+EAA  LF  +   ++
Sbjct: 240 VLEGGAMPGAEEAREAGLLAWREVPARPAFRAVEV--LSPRGDLQEAAARLFEGLHRLEE 297

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
           +G + I   ++P  GLG A+ +RL +AA
Sbjct: 298 AGVARIYAEAVPEVGLGRAVMDRLRKAA 325


>gi|291460250|ref|ZP_06599640.1| SUA5/YciO/YrdC family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417197|gb|EFE90916.1| SUA5/YciO/YrdC family protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 368

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/362 (28%), Positives = 158/362 (43%), Gaps = 51/362 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +A E +  G  +A PTETVYGL  ++ +P A R++Y  K RP+ NPLI HVS I  
Sbjct: 9   EGIEEAAEIIRRGGLVAFPTETVYGLGGNALSPEAARKIYAAKGRPSDNPLIVHVSGIKD 68

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +     +   +  L   FWPGPLTL+L    T  I   ++  L T   R P      +L
Sbjct: 69  AEPLVTEITEDARRLMARFWPGPLTLIL--RKTERIPRETSGGLDTVALRCPENACALRL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN SG+ S T   H+    +   I +I+DGG   IG+ES+I+++    
Sbjct: 127 ISESGVPIAAPSANLSGKPSPTEAGHVAKD-LGGRIDMILDGGPVGIGVESSILDLSTGT 185

Query: 188 KVRILRPGGLEIETLKRAISVE-------LEYCVDETSTPQSPGMLKSHYAPRSQVRL-- 238
            + +LRPG +  E L   +  +       L   V ET  P++PGM   HYAP +++ L  
Sbjct: 186 PI-LLRPGAVTAEELSAFLGQKVGIDPAILSGTVSETMHPRAPGMKYRHYAPEAEMYLVT 244

Query: 239 --------------------------------RAIHVNPREALIRFGNV----PIKNIEN 262
                                           R +    R  ++         P  + + 
Sbjct: 245 TRLFRDRGEAIGREERELSDRRTARWIRERAERELSEGKRVGILCVKETRPFYPPDSPDG 304

Query: 263 AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +    L    ++     +LF  ++  D+     I   S  + G+G A+ NR+ +AA  R
Sbjct: 305 TLSVKVLGSREEMLTMTRSLFRLLREFDEEKKDRIYAESCSDRGVGFALMNRMRKAAGMR 364

Query: 323 NQ 324
             
Sbjct: 365 EI 366


>gi|218883353|ref|YP_002427735.1| Putative translation factor [Desulfurococcus kamchatkensis 1221n]
 gi|218764969|gb|ACL10368.1| Putative translation factor [Desulfurococcus kamchatkensis 1221n]
          Length = 359

 Score =  315 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 96/341 (28%), Positives = 157/341 (46%), Gaps = 34/341 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L +A   L     +A PTETVYGL        A+ ++++ K RP  NPLI H+S + M
Sbjct: 18  ELLIQAARILLNKGIVAFPTETVYGLGAVIYYEDAVEKIFKAKMRPPDNPLIIHISTLDM 77

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
           +++ A ++   +  L   FWPGPLTL+L       +  + T  L T   R+P      +L
Sbjct: 78  LEEVALNIPEDAYSLINRFWPGPLTLILPRNP--RVPKIVTGGLDTIAVRMPGHPTALEL 135

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G+P+A PSAN SG+ S    +H++   +   I  IID G +  G+EST+VN+  E 
Sbjct: 136 INVVGYPIAAPSANLSGRPSPVTAEHVIRD-LMGRIDAIIDAGETFFGVESTVVNIL-ED 193

Query: 188 KVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
              +LRPG   +E +++ +  ++        +  +    +PGM   HY+P +++ L    
Sbjct: 194 PPTLLRPGAYPVEEIEKVLGRKIAIPDFARGLKYSEVALAPGMKYRHYSPEAKLILVESV 253

Query: 243 VNPREALIRFGNVPIKNI-----------------------ENAIISLNLSKTGKLKEAA 279
            N    +        ++I                       E     L +     L E A
Sbjct: 254 TNDYSVIANKIIEAARDISVSTNSDICIVSSIETSSYYRKLEKVKAVLIIGSRRNLYEVA 313

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  ++  D+ G  ++     P  G+G+A+ NRL +A++
Sbjct: 314 KNLFKILRDVDNIGCKTVFVEGFPETGIGLAVMNRLRKASS 354


>gi|329766034|ref|ZP_08257595.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137489|gb|EGG41764.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 346

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 108/330 (32%), Positives = 158/330 (47%), Gaps = 27/330 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L  G  +A PTETVYGL  D  NP AI+++++ K RP+ NPLI H+S+   VK
Sbjct: 18  IDQCVSILRKGGLVAFPTETVYGLGADGLNPKAIKKIFQAKNRPSDNPLIFHISNKKDVK 77

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           K+    P  +  L + FWPGPLTL+L    ++ I  ++T  L T   R+P       LI 
Sbjct: 78  KYTKDIPATAEKLIEKFWPGPLTLIL--KKSSIIPKIATGGLNTIAIRMPSHKIALSLIN 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           + G+P+  PSAN  G+ S T  KH+L   +  +I  +IDG  S IG+ESTI+++   K  
Sbjct: 136 SLGNPIVAPSANLFGKPSPTLAKHVLYD-LDGKIDAVIDGRNSVIGIESTILDLTT-KTP 193

Query: 190 RILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH-- 242
            ILRPG +  E LK  +        L     +    +SPGM   HY+P +++ L   +  
Sbjct: 194 TILRPGKISYEELKNLLKKVKYHPSLLGKKSKLLKVKSPGMKYKHYSPNAKIILVEGNTK 253

Query: 243 ------------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                          ++ LI   N         +    +  T  L   A NL+   +  D
Sbjct: 254 NTQKKIHELIKKFQQQKKLIGIINNKNIKKIPFVKFKFIGTTKNL--IASNLYKSFRELD 311

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D     I    +    LG AI NRL +AA+
Sbjct: 312 DQKVDVIIMREVDTSNLGFAIMNRLRKAAS 341


>gi|326386145|ref|ZP_08207769.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209370|gb|EGD60163.1| translation factor SUA5 [Novosphingobium nitrogenifigens DSM 19370]
          Length = 320

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 125/312 (40%), Positives = 169/312 (54%), Gaps = 12/312 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +A E +  G  +A+PTETVYGLA  +    A+  +Y  K RP  NPLI HV+DI+  
Sbjct: 20  AIVRAAEVIREGGLVAVPTETVYGLAARADRDEAVAGIYRAKGRPDFNPLIVHVADIAGA 79

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++ A +D  +  L + FWPGPLTLV+       +    +A L T   R P     + LIE
Sbjct: 80  ERLAHLDATARKLIEAFWPGPLTLVVPRREDAGLSAAVSAGLPTVALRCPAHPVMRALIE 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA PSANRSG +S T   H+ SS +   + LI+DGG    GLESTIV V+   + 
Sbjct: 140 AAGVPLAAPSANRSGGVSPTTADHVFSS-LGHRVDLILDGGTCARGLESTIVGVRPGGRW 198

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LRPG ++ ETL   +  E E         ++PG L SHYAP   VRL A      E +
Sbjct: 199 TLLRPGPIDRETLAALLGHENEEMARGG--IEAPGQLASHYAPGKPVRLGADAPEADEFM 256

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
           I FG V           ++LS++G   EAA  L+  +     +  S IA ++IP  G+G 
Sbjct: 257 IGFGPVKGD--------VSLSESGDPAEAAARLYACLHAGAAAPQSRIAIAAIPGEGIGE 308

Query: 310 AINNRLERAAAP 321
           AIN+RL RAA P
Sbjct: 309 AINDRLRRAAVP 320


>gi|296448212|ref|ZP_06890109.1| Sua5/YciO/YrdC/YwlC family protein [Methylosinus trichosporium
           OB3b]
 gi|296254296|gb|EFH01426.1| Sua5/YciO/YrdC/YwlC family protein [Methylosinus trichosporium
           OB3b]
          Length = 323

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 125/310 (40%), Positives = 178/310 (57%), Gaps = 4/310 (1%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             L  G  +A PTETVYGL  D+ +P A+ R+Y  K RP+ NPLI HV+D+      A++
Sbjct: 17  RLLRDGGLVAFPTETVYGLGADATSPAAVARIYRAKGRPSFNPLIAHVADLDAALAEAAL 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135
              ++ LA+  WPGPLTLV   ++   +  L+ A L +   RVP       LI   G P+
Sbjct: 77  PKAAIRLAETLWPGPLTLVAPRVAAGSVCDLACAGLASVALRVPEAPVALALIRAAGRPI 136

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG +S     H++   +   + L++DGG ++ G+ESTI++   E   R+LRPG
Sbjct: 137 AAPSANRSGHVSPVTAAHVI-EDLDGAVDLVLDGGRAERGVESTILSFVGETP-RLLRPG 194

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
            L  ETL+  +   LE      +   +PGM  SHYAPR+++RL A  +   EA + F   
Sbjct: 195 ALARETLEALLGRPLE-TTGAAAAVVAPGMTASHYAPRARLRLDASALREGEAGLDFAGA 253

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
                + A + ++LS  G L+EAA NLF +++  D  GA  IA + IP HGLG AI +RL
Sbjct: 254 LRARADAAAMIVDLSPKGDLEEAAANLFGHLRELDARGADHIAVAPIPAHGLGEAIADRL 313

Query: 316 ERAAAPRNQS 325
            RAAAPR ++
Sbjct: 314 RRAAAPRTKA 323


>gi|150866973|ref|XP_001386755.2| hypothetical protein PICST_33949 [Scheffersomyces stipitis CBS
           6054]
 gi|149388229|gb|ABN68726.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 387

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 171/365 (46%), Gaps = 48/365 (13%)

Query: 5   SITD---SNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD    + +R A  E +     +  PTETVYGLA  + N  ++R +Y  K RPA NPL
Sbjct: 25  TITDKQTEDNIRLAANELVHTTNCVGFPTETVYGLAGSALNDDSVRSIYRAKNRPADNPL 84

Query: 61  ICHVSDISMVK-----KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           I HVS +  +K     +   +  + L+L   FWPGPLT++L +   + I  L TAN  T 
Sbjct: 85  IVHVSSLDQLKRKLLPRDYEIPSVYLNLIDKFWPGPLTILLPIHKDSPISKLVTANQSTF 144

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI     PLA PSAN S + S T  +H+    +  +IP I+DGG   +
Sbjct: 145 AVRMPNHPIARALIAVSDTPLAAPSANASTRPSPTLAQHVF-HDLQGKIPYILDGGACDV 203

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-------EYCVDETSTPQSPGMLK 227
           G+EST+V+      + +LRPGG+ +E + R +  EL       +    +    ++PGM  
Sbjct: 204 GVESTVVDGLVSPPM-LLRPGGVSVEEI-RTVGGELWENVILSKKTAGKNEAVRTPGMKY 261

Query: 228 SHYAPRSQVRL-------------RAIHVNPREALIRFGNVPIKNIENAI-------ISL 267
            HY+P ++V L                  N     I+   +  +  ++A        I  
Sbjct: 262 RHYSPTAKVVLFVDCGDGAKAVNDYIDQNNIDPVQIKIALLKSRTFQDADKINSNIYIQR 321

Query: 268 NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA------AP 321
            L  TG   E + NLF  ++  D+ G   I    I     G+A+ NRL +AA        
Sbjct: 322 ELGTTGS--EISHNLFKALREMDEYGVDLIMIEGIDESNEGLAVMNRLSKAALVTVKGGE 379

Query: 322 RNQSQ 326
           R++ +
Sbjct: 380 RDEGK 384


>gi|313631919|gb|EFR99062.1| protein Sua5 [Listeria seeligeri FSL N1-067]
          Length = 303

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 155/306 (50%), Gaps = 19/306 (6%)

Query: 37  VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLV 95
            D+ N  AI+++YE K RP+ NPLI H++    +    AS    ++ L + FWPGPLT++
Sbjct: 1   ADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFVASYPQKAIKLMEKFWPGPLTVI 60

Query: 96  LDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           L L   + +    +A L T   R+P       LI+  G P+A PSANRSG+ S T+  H+
Sbjct: 61  LPLKKDS-LASNVSAGLSTVGVRMPDHPVSLALIKEAGIPVAAPSANRSGKPSPTSASHV 119

Query: 155 LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC 213
           +   +  ++  IIDGG + +GLEST+++   E  V ILRPGG+  E +++ I  VEL   
Sbjct: 120 I-EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV-ILRPGGITKEQIEQVIGSVELANN 177

Query: 214 -VDETSTPQSPGMLKSHYAPRSQVRL------------RAIHVNPREALIRFGNVPIKNI 260
              ET  P++PGM  +HYAP++ V L              +    ++  I      +  +
Sbjct: 178 DTKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQKEINKVEAAHKKLGILATKELLDGL 237

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
               ++        ++E A  L+  ++  D +    I     P   LG A+ NRLE+AA 
Sbjct: 238 TTNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDIIFAEVYPETELGAAVMNRLEKAAG 297

Query: 321 PRNQSQ 326
            R  S+
Sbjct: 298 NRRISE 303


>gi|194333295|ref|YP_002015155.1| Sua5/YciO/YrdC/YwlC family protein [Prosthecochloris aestuarii DSM
           271]
 gi|194311113|gb|ACF45508.1| Sua5/YciO/YrdC/YwlC family protein [Prosthecochloris aestuarii DSM
           271]
          Length = 316

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 113/325 (34%), Positives = 163/325 (50%), Gaps = 12/325 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + ITDS   R+A +F++ G  +A PTETVYGL  D  N  A++R++  K RP  NPL
Sbjct: 1   MQTL-ITDSP--REAADFINRGQIVAFPTETVYGLGADITNDDAVQRIFLAKGRPGDNPL 57

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV     V+K  AS+   +  L   F+PGPLTLVL     + I PL TA L T   R 
Sbjct: 58  IVHVYSPKEVEKVAASIPETARKLMDRFFPGPLTLVL--CKQSRISPLVTAGLPTVGVRC 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+  +    HP+A PSAN SG+ S T+ K +    +  +I  I+ G  S IGLES
Sbjct: 116 PRHPVTRAFLRECRHPVAAPSANLSGKPSSTDWKSV-HEDLNGKINCILRGEQSAIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+   E   R+LR G + ++ L+  +  +     ++E + P+SPG+   HYAP +++R
Sbjct: 175 TIVDCATE-PPRLLRAGAISLDELRAIVPGLLGPAAIEEHAQPKSPGLKYPHYAPSAEIR 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L        E       + +             +     E A  LF + +  D     +I
Sbjct: 234 LCGEEYGVCEGGKETAWIGLSPPPEGAAVT--CRCDDAGEYAHRLFRFFRECDREHIRTI 291

Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322
                P  G+G A+ +RL RAA  +
Sbjct: 292 FCEMPPPEGIGQALRDRLRRAAEGK 316


>gi|313636281|gb|EFS02090.1| protein Sua5 [Listeria seeligeri FSL S4-171]
          Length = 303

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 19/306 (6%)

Query: 37  VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLV 95
            D+ N  AI+++YE K RP+ NPLI H++    +    AS    ++ L + FWPGPLT++
Sbjct: 1   ADATNQAAIQKIYEAKGRPSDNPLIVHIASRDQMDAFVASYPQKAIKLMEKFWPGPLTVI 60

Query: 96  LDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHI 154
           L L   + +    +A L T   R+P       LI+  G P+A PSAN+SG+ S T+  H+
Sbjct: 61  LPLKKDS-LASNVSAGLSTVGVRMPDHPVSLALIKEAGIPVAAPSANQSGKPSPTSASHV 119

Query: 155 LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYC 213
           +   +  ++  IIDGG + +GLEST+++   E  V ILRPGG+  E +++ I  VEL   
Sbjct: 120 I-EDLDDKVAGIIDGGATGVGLESTVIDCSTEIPV-ILRPGGITKEQIEQVIGSVELANN 177

Query: 214 -VDETSTPQSPGMLKSHYAPRSQVRL------------RAIHVNPREALIRFGNVPIKNI 260
              ET  P++PGM  +HYAP++ V L              +    ++  I      +  +
Sbjct: 178 DTKETEKPKAPGMKYTHYAPKAPVYLVEGSKAFWQKEINKVEAAHKKLGILATKELLDGL 237

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
               ++        ++E A  L+  ++  D +    I     P   LG A+ NRLE+AA 
Sbjct: 238 TTNAVTQTTGSIESMEEIANQLYKGLRAFDHAEVDIIFAEVYPETELGAAVMNRLEKAAG 297

Query: 321 PRNQSQ 326
            R  S+
Sbjct: 298 NRRISE 303


>gi|284047802|ref|YP_003398141.1| Sua5/YciO/YrdC/YwlC family protein [Acidaminococcus fermentans DSM
           20731]
 gi|283952023|gb|ADB46826.1| Sua5/YciO/YrdC/YwlC family protein [Acidaminococcus fermentans DSM
           20731]
          Length = 368

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 162/331 (48%), Gaps = 22/331 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L  A   L  G  +A PTETVYGL  D  N  A R+++  K RPA NPLI H+S+  
Sbjct: 15  EAQLAPAARLLQQGEVVAFPTETVYGLGADGLNGEACRKIFAAKGRPADNPLILHISEKE 74

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +    S + P++  L + FWPGP+TL++    +  I  + TA  +T   R P     + 
Sbjct: 75  EILPLTSGLSPMAEKLMEAFWPGPMTLIVP--KSDRIPEVVTAGQETVAVRFPSNPVARA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PLA PSAN+SG+ S TN + +L   +   I  ++DGG   IG+ESTI++    
Sbjct: 133 LIRLTGRPLAAPSANKSGKPSPTNAQDVL-QDMDGIIGGVVDGGACDIGVESTIIDTTGT 191

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAI--- 241
             V ILRPGG+  E ++  +  VEL+   V     P++PGM   HYAP++ + L      
Sbjct: 192 VPV-ILRPGGITEEMIQEVMGEVELDPGLVRPDQKPKAPGMKYRHYAPKAPMVLIEGPEA 250

Query: 242 -------HVNPREALIRFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                   +      ++ G + +      + +A   +  +    L + A NL+  ++  D
Sbjct: 251 GLGVIRAAIMAEAWGLKVGVLALDETVGHLPHAAHLVICNAGKDLGDLAENLYTELREFD 310

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                 I    +   GLG+AI NR+ ++A  
Sbjct: 311 RQQVDIILGEGVSTRGLGLAIMNRMRKSAGH 341


>gi|303230732|ref|ZP_07317479.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514492|gb|EFL56487.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 344

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 105/345 (30%), Positives = 161/345 (46%), Gaps = 30/345 (8%)

Query: 1   MQIMSITD--SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           M+   IT+   + L+     L  G  +AIPTETVYGL  +  +  A+ ++Y  K RP+ N
Sbjct: 1   METKIITELTRDNLQLVAHALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDN 60

Query: 59  PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI HV +   +K      P +   L + FWPGPLT+ L    +  +   +T  L     
Sbjct: 61  PLILHVPNAESIKPLVKEIPETAKALIEAFWPGPLTITLP--KSDLVPDRATGGLARVAL 118

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R P     + ++E  G P+A PSAN SG+ S T  + +    +   IP I+D GI  IG+
Sbjct: 119 RCPDHAVCRNILELAGVPIAAPSANISGRPSPTTAQSVY-DDMNGRIPYIVDAGICTIGV 177

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234
           EST+V V+ +  V ILRPGG+  E L++ +       +   +   P++PGM   HYAP +
Sbjct: 178 ESTVVEVRDDG-VTILRPGGITKEMLEQVVDNVSYDPFLSSQNEAPKAPGMKYKHYAPDA 236

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISL------------------NLSKTGKLK 276
            +R  A   NP++    F NV  +        L                      +G   
Sbjct: 237 PMR--AFIGNPKDVAETFSNVIREQETKRGAFLISQETYELLKDSVHGEFHVYGHSGDAV 294

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A + +  +   ++     I    + N GLG+A+ NR+E+A A 
Sbjct: 295 ALAHDFYKTLHHFNECDVDYILAEGVENTGLGVAVMNRMEKACAG 339


>gi|294495411|ref|YP_003541904.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalophilus mahii DSM
           5219]
 gi|292666410|gb|ADE36259.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalophilus mahii DSM
           5219]
          Length = 355

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 113/340 (33%), Positives = 174/340 (51%), Gaps = 25/340 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I   T  +  +KA + L  G  +A PTETVYGL  D+ NP A+ ++++ K RPA NPL
Sbjct: 14  MRIAEETAEDIFKKAGKLLREGKTVAFPTETVYGLGADALNPQAVEQIFKAKGRPADNPL 73

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HVS+     +   +  PL+  LA+ FWPGPLT++L+   T  +  ++T  L+T   R+
Sbjct: 74  IVHVSNQEQCNQLVITFTPLAEKLAECFWPGPLTIILE--KTDRVPYITTGRLETVAIRM 131

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     +K+IE    P+A PSAN SG+ S T   H+    +   I  I+DGG  +IG+ES
Sbjct: 132 PANQIARKIIEAACKPIAAPSANISGRPSPTTASHV-EEDLQGRIDAIVDGGEVEIGVES 190

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDET-STPQSPGMLKSHYAPRSQ 235
           T+V+ + E  V ILRPG +  + +++    E  + Y   +    P SPGM  +HY+P ++
Sbjct: 191 TVVDARREVPV-ILRPGKISAKDIQQCTKTEVCIGYARKDNMEKPLSPGMKYTHYSPSAR 249

Query: 236 VRLRAIHVNPREALI------------RFGNVPIKNIENAII---SLNLSKTGKLKEAAF 280
           V L         A I            + G +    I+        L++ +  K +EAA 
Sbjct: 250 VILVQGKAKDVAAKIADIIGKTNDDQKKAGLLLTVEIQKEFPLEKKLSIGQGTKPREAAK 309

Query: 281 NLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAA 319
            +F  ++  D  G   I         G+G A+  RL++AA
Sbjct: 310 RIFAGLREMDSKGMDLIIVDGSFTEKGIGAAVLERLQKAA 349


>gi|315186249|gb|EFU20010.1| translation factor SUA5 [Spirochaeta thermophila DSM 6578]
          Length = 330

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/328 (35%), Positives = 173/328 (52%), Gaps = 17/328 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++  TD   + +A   L  G  +A PTETVYGL  ++ +  A+ R++EIK+RP  +PLI
Sbjct: 5   RVVPATDET-IEEAARLLREGEAVAFPTETVYGLGANALDAVAVARIFEIKERPLFDPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+S   MV +    V  L+  L   FWPGPLTLVL       +  + TA L T   R+P
Sbjct: 64  VHISGEEMVGEVVREVPDLARTLMARFWPGPLTLVLP--KGERVPGIVTAGLPTVGVRMP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LIE    P+A PSANR G +S T   H+    +   + L++DGG  ++G+EST
Sbjct: 122 AHPVARRLIEKAEVPIAAPSANRFGSLSPTRAGHVAG-QLGGRVALVLDGGACEVGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVR 237
           +V V+   +VR+LRPGG+ +E L+ A+          +     ++PGML  HYAP   V 
Sbjct: 181 VVRVEG-GQVRVLRPGGVPVEALEEAVGRGAVVVGGPEREGAQEAPGMLPWHYAPSVPVV 239

Query: 238 LRAIHVNPR------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           +      P         L+ F   P +    A+    LS  G L+EAA  LF  +   ++
Sbjct: 240 VLEGGAMPGAEEAREAGLLAFRGAPEEPAFRAVEV--LSPRGDLQEAAAGLFEGLHRLEE 297

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
           +G + I   ++P  GLG A+ +RL +AA
Sbjct: 298 AGVARIYAEAVPEVGLGRAVMDRLRKAA 325


>gi|298674856|ref|YP_003726606.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalobium evestigatum
           Z-7303]
 gi|298287844|gb|ADI73810.1| Sua5/YciO/YrdC/YwlC family protein [Methanohalobium evestigatum
           Z-7303]
          Length = 358

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 114/343 (33%), Positives = 172/343 (50%), Gaps = 29/343 (8%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ I  SN   ++ KA E L     +A PTETVYGL  ++ +  ++R+++  K RP  N
Sbjct: 6   EILRINSSNFSESISKAAEILKNRGTVAFPTETVYGLGANALDSVSVRKIFSAKGRPPDN 65

Query: 59  PLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI H++        +   P  +  L   FWPGPLTL+L       +  ++T  L T   
Sbjct: 66  PLIVHIASKEQAIDISEDIPDNAFLLMDAFWPGPLTLILKR--KNFVPDVTTGGLNTVAI 123

Query: 118 RVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P   T  +LI+  G P+A PSAN SG+ S T  +H++S  +  +I  I+D G   IG+
Sbjct: 124 RMPDNETAIELIKKAGVPIAAPSANISGKPSPTTAEHVISD-LYGKIDAIVDNGAVDIGV 182

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDE--TSTPQSPGMLKSHYAPR 233
           EST+V++  +K + +LRPGG+ IE LK  I  +E+ Y  +       +SPGM   HY+P 
Sbjct: 183 ESTVVDMTSDKPL-LLRPGGIGIEDLKEYIPDIEIGYNSENLIDKKVKSPGMKYIHYSPS 241

Query: 234 SQVRLRAIHVNPREAL-----------IRFGNVPIKNIENAIISLN-----LSKTGKLKE 277
           S+V L        E +           +  G +      N I   N     L     +K+
Sbjct: 242 SKVVLVEGFYRVSEKINQVISDYHKNDLNVGLLVTNETGNQITDKNINIFLLGNRDNIKK 301

Query: 278 AAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAA 319
            A NLF  ++  DD     I     I + G+G A+ NRL++AA
Sbjct: 302 VANNLFKGLRTLDDMNLDVIIVDGSIKHEGIGSAVINRLQKAA 344


>gi|85375447|ref|YP_459509.1| putative translation factor [Erythrobacter litoralis HTCC2594]
 gi|84788530|gb|ABC64712.1| putative translation factor [Erythrobacter litoralis HTCC2594]
          Length = 314

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 120/314 (38%), Positives = 168/314 (53%), Gaps = 13/314 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + +A   ++AG  +A+PTETVYGLA  + +P A+  +Y  K RP+ NPLI HV D 
Sbjct: 13  DRHGVAQAARIINAGGLVAVPTETVYGLAARADDPDAVAAIYAAKGRPSFNPLIVHVLDP 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +   +   +D  +  LA  FWPGPLT+VL L    D+    TA L T   RVP     ++
Sbjct: 73  AAAGRLVEMDDKAQALAGRFWPGPLTMVLPLRDAADVAGAVTAGLPTLAVRVPAHPLMRE 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+     PLA PSAN S  +S T+  H+L  ++   I  ++DGG    GLESTIV ++ +
Sbjct: 133 LLTLAEAPLAAPSANVSESVSPTSPGHVLK-TLDGRIDAVLDGGECIAGLESTIVALRGD 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LRPG +  E L  A+  E       T   ++PG L  HY+P   VRL A+     
Sbjct: 192 GAWSLLRPGPIAKEALIEALGAE---PSGTTEGVEAPGQLARHYSPGKPVRLGAVEAAED 248

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E L+ FGN             +LS +G   EAA  L+  +    +S  + IA + IP+ G
Sbjct: 249 EFLLGFGNTAGD--------WSLSDSGDPAEAAARLYAGLHRGAESDKARIAVAPIPDEG 300

Query: 307 LGIAINNRLERAAA 320
           LG AIN+RL RAAA
Sbjct: 301 LGAAINDRLRRAAA 314


>gi|171696344|ref|XP_001913096.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948414|emb|CAP60578.1| unnamed protein product [Podospora anserina S mat+]
          Length = 413

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 109/344 (31%), Positives = 166/344 (48%), Gaps = 49/344 (14%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
           P+A PTETVYGL  D+ + TA++ +Y  K RP+ NPLI HVSD+SM+   +++  +   L
Sbjct: 68  PVAFPTETVYGLGADATSSTAVKGIYTAKGRPSDNPLIVHVSDLSMLSTLSTIPEIYHEL 127

Query: 84  AKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSAN 141
              FWPGPLT++L + ++   + P  TA L T   R+P     + LI+  G PLA PSAN
Sbjct: 128 ISKFWPGPLTILLPVPTSGQLLAPEVTAGLTTFGARMPDSPLARALIQLVGKPLAAPSAN 187

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            S + S T   H+L   +  +I LI+DGG   +G+EST+V+  C   V +LRPGG+ IE 
Sbjct: 188 ASTRPSPTKAVHVL-EDLEGKIELILDGGDCAVGVESTVVDGLCNPPV-VLRPGGVGIEE 245

Query: 202 LKRAISVE-------LEYCVDETSTPQSPGMLKSHYAPRSQVRLRA-------------- 240
           +++    E           V E   P++PGM   HY+PR++V L                
Sbjct: 246 IRQVKGWEGVVKGYKDRSEVGEGHKPRAPGMKYKHYSPRARVVLFEGHKPVNVGKELEGG 305

Query: 241 -----------------------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE 277
                                  I        +R G++  +  +     L++     +K 
Sbjct: 306 GQKKVGVIRTGEWEGLAGETEGRIESEEGGFAVRQGSLRDEEGKELATVLDVDLGRDVKG 365

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAAA 320
            A  LF  ++  D  GA  I    + +   +  A+ NRL +AA+
Sbjct: 366 VAHGLFAALRELDRLGADIIFVEGVSDGDDIAAAVMNRLRKAAS 409


>gi|169335782|ref|ZP_02862975.1| hypothetical protein ANASTE_02207 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258520|gb|EDS72486.1| hypothetical protein ANASTE_02207 [Anaerofustis stercorihominis DSM
           17244]
          Length = 340

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 177/336 (52%), Gaps = 20/336 (5%)

Query: 2   QIMSITDSNALRK----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I  +T  + L +    A   ++AG  +  PTETVYGL  ++ +  A++++++ K RP+ 
Sbjct: 4   KIYDLTKDDNLTEIFSDAASVINAGGTVVFPTETVYGLGANAYDDEAVKKIFKAKNRPSD 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+SD+ M+    + +   +  L   F+PGPLTL++    ++ +    +  L T  
Sbjct: 64  NPLIVHISDLDMIDDLVTCISDDARKLMSKFFPGPLTLIM--KKSSKVPNSVSNGLDTVG 121

Query: 117 FRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P        I+  G P+A PSAN S + SITN K+++   +  ++ +I+    S IG
Sbjct: 122 IRMPSDKEANGFIKACGVPIAAPSANISKRPSITNKKYLV-EELSGKVDMILCSKNSSIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRS 234
           LEST+++V  +K V++LRPG +  E +++ I  ++  Y  ++   P+SPGM   HY P++
Sbjct: 181 LESTVLDVSSDK-VKLLRPGKISAEDIEKVIGKKVYGYNGEDALLPKSPGMKYEHYKPKT 239

Query: 235 QVRL------RAIHVNPREALIRFGNVPIKNIENAI--ISLNLSKTG-KLKEAAFNLFNY 285
           +V +        I+          G + + NI   I    + L   G  + +A+ NL+  
Sbjct: 240 KVVVLNGNDKSIINYLNDIKADDAGFIGLDNITQKIGNKKIKLKSFGKDISDASRNLYYL 299

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           ++  D      I   ++ + G+G+A  NRL +AA+ 
Sbjct: 300 LREMDSENLDIIYVQAMDSRGIGLAYMNRLLKAASG 335


>gi|189499461|ref|YP_001958931.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium phaeobacteroides
           BS1]
 gi|189494902|gb|ACE03450.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium phaeobacteroides
           BS1]
          Length = 318

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 110/322 (34%), Positives = 169/322 (52%), Gaps = 12/322 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +T S  +  A  +++ G  +A PTETVYGL  D  +  AI ++Y  K RP  NPL
Sbjct: 1   MQTI-VTQSVGV--AATWINRGEIVAFPTETVYGLGADITSDAAIEKIYAAKGRPPDNPL 57

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+  +  +++ AS  P S   L   F+PGPLT++L+     ++  L TA L T   R+
Sbjct: 58  IVHIHSLHQLQEVASDIPRSAESLIHHFFPGPLTVILN--KNPEVSQLVTAGLPTVGIRL 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++ +    HP+A PSAN SG+ S T+ K +    +  +IP ++ G  S IGLES
Sbjct: 116 PAHPVAQEFLRRCTHPVAAPSANISGRPSSTDWKAVY-DDLKGKIPCVLKGPQSTIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+       R+LR G + +E+L+  +  +      ++T +P+SPG+   HY+P +Q+ 
Sbjct: 175 TIVDCSV-HPPRLLRSGAISLESLRNVVPQIRAGSSNEKTHSPKSPGLKYPHYSPSAQII 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L      P E       + I      I    + K    +E AF LF++ +  D  G S I
Sbjct: 234 LCEEGYPPIERETNSAWIGISQQPEGIAKTAICK--NPEEYAFRLFSFFRECDREGISVI 291

Query: 298 AFSSIPNHGLGIAINNRLERAA 319
                P  G+G+AI +RL+RAA
Sbjct: 292 FCEMPPADGIGLAIRDRLQRAA 313


>gi|190345038|gb|EDK36848.2| hypothetical protein PGUG_00946 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 403

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 108/351 (30%), Positives = 169/351 (48%), Gaps = 36/351 (10%)

Query: 1   MQIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           ++I        L  A + L      I  PTETVYGL   + +  +++ +Y+ K RPA NP
Sbjct: 50  LEISDPVTKKNLETAAKVLTTTHDVIGFPTETVYGLGGSALSDESVKSIYKAKNRPADNP 109

Query: 60  LICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           LI HVS IS +K+     +  +  +   L   FWPGPLT++L +  ++ I    TA   T
Sbjct: 110 LIVHVSSISQLKRKILPPNYQIPKVYESLIHKFWPGPLTILLPVHESSPISKFVTAGQST 169

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P     + LI     PLA PSAN S + S T   H+ +  +   IP I+DGG   
Sbjct: 170 FAVRIPQHPVARALIALSDTPLAAPSANASTRPSPTIASHVYND-LQGRIPYILDGGSCD 228

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLK 227
            G+EST+V+   +  + +LRPGG+ +E +K          V  +    +T   ++PGM  
Sbjct: 229 FGVESTVVDGLVDPPM-LLRPGGVSLEEIKSVGGEPWKDVVVAKKTAGKTEAVRTPGMKY 287

Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISL-------NLSKTGKLKE--- 277
            HY+P ++V L     + +EA+  +  +   N+++  I+L        +S T   KE   
Sbjct: 288 RHYSPTARVVLFVNCGDGKEAIDNY--ISSHNLQDCKIALLKSRHFVGISSTSANKESID 345

Query: 278 ---------AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                     + NLF Y++  D++G   I    I     G+A+ NRL +AA
Sbjct: 346 RELGTDGHTISHNLFRYLREVDETGVDMIFVEGIEETNEGLAVMNRLSKAA 396


>gi|294507611|ref|YP_003571669.1| SUA5 protein [Salinibacter ruber M8]
 gi|294343940|emb|CBH24718.1| SUA5 protein [Salinibacter ruber M8]
          Length = 412

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 109/309 (35%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L  G  +A PTETVYGL  D+  P A+RR++E K RPA NPLI H+     + + 
Sbjct: 108 EAADRLRRGELVAFPTETVYGLGADAFQPDAVRRIFEAKGRPADNPLIVHLRRRDQIGQV 167

Query: 74  -ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A V  ++ HL   F PGPLTL+L      D+  + TA L+T   RVP    T+  +E  
Sbjct: 168 AARVPSVAQHLLDAFAPGPLTLILP--KHEDLPSVVTAGLETVGVRVPRLPLTQSFLEAC 225

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+  PSANRSG+ S T+ + +    +   I  I+ GG +  G+EST+V+   +    +
Sbjct: 226 DTPVPAPSANRSGRPSPTSWEAV-EHDLAGRIDCILQGGRTDAGVESTVVDCTTD-PATV 283

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           LRPG + +E+L+RA+        D    P+SPG    HYAP +QVRL     +   +  R
Sbjct: 284 LRPGAVSVESLRRALGAVQVPSSDADEAPRSPGTRHRHYAPSAQVRLVE-DPSEAVSGDR 342

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAI 311
              V +    +      +     +K  A +LF+  +  D++    I   ++P +GLG A+
Sbjct: 343 HAYVGLDVPPHPDALGAVYVEESVKAYAHDLFHIFRTCDENEVEVIYAQTVPPNGLGRAL 402

Query: 312 NNRLERAAA 320
           N+RL RAAA
Sbjct: 403 NDRLRRAAA 411


>gi|149174845|ref|ZP_01853469.1| sua5 related protein [Planctomyces maris DSM 8797]
 gi|148846182|gb|EDL60521.1| sua5 related protein [Planctomyces maris DSM 8797]
          Length = 325

 Score =  313 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 116/329 (35%), Positives = 173/329 (52%), Gaps = 17/329 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M    S  ++ A   +  G  +A  TETVYGL  ++ NP A+ +++ +K+RP  +PLI H
Sbjct: 1   MKCEISQNIQAAANLIRLGELVAFATETVYGLGANALNPEAVAQIFAVKQRPHFDPLIVH 60

Query: 64  VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           ++    + +        +  LA  FWPGPLTLVL       +  L T+ L +   R+P  
Sbjct: 61  IASTGQLDELTTEFSSTAEKLASTFWPGPLTLVLP--KKKVVPDLVTSGLDSVAIRIPAH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              +KL+E    P+A PSAN+ G++S T    + +  +  EI LI+DGG   +G+EST++
Sbjct: 119 PVARKLLEITQLPIAAPSANKFGRLSPTRAVDV-AEQLGDEIKLILDGGPCTVGVESTVI 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVD--ETSTPQSPGMLKSHYAPRSQVRL 238
               ++ V +LRPGG+ +E ++  I  + L    D  E ++P SPGML  HYAP +++ +
Sbjct: 178 QCLGDQPV-LLRPGGISLEEIQACIGEIRLAELEDYAEANSPVSPGMLPKHYAPSTRLII 236

Query: 239 RAIHVNPREALIRFGNV---PIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIADD 291
              H     A    G +   P+K+ E           LS TG LK AA N F  ++  D 
Sbjct: 237 -VDHPEQLPAAGSLGVLSLYPLKDTEFRDCQFTVQQILSPTGDLKMAAANFFAALRKLDA 295

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +G   I    +P  GLG  INNRLERAAA
Sbjct: 296 AGIDQIVALRLPETGLGRTINNRLERAAA 324


>gi|165760855|pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From
           Sulfolobus Tokodaii
          Length = 352

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/338 (29%), Positives = 156/338 (46%), Gaps = 23/338 (6%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI+ I     + + ++ A + +  G  +A PTETVYGL  ++ +  A  ++++ K RP  
Sbjct: 3   QIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVD 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H++D + + + A  +    L +A++ WPGPLT VL    T  +    TA L T  
Sbjct: 63  NPLIVHIADFNQLFEVAKDIPDKVLEIAQIVWPGPLTFVL--KKTERVPKEVTAGLDTVA 120

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P      +LI   G P+A PSAN + + S T  + ++   +   + +IIDGG +  G
Sbjct: 121 VRXPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVD-LNGRVDVIIDGGHTFFG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231
           +ESTI+NV  E  V +LRPG   IE LK+        E      E     +PG    HYA
Sbjct: 180 VESTIINVTVEPPV-LLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGXKYKHYA 238

Query: 232 PRSQVRLRAIH---------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
           P +++ L             ++ +  +       +      +  + L     L E A NL
Sbjct: 239 PNTRLLLVENRNIFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNL 298

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F+  +  D            P  G+G AI NR  +A+ 
Sbjct: 299 FDSFRELDKLNVDLGIXIGFPERGIGFAIXNRARKASG 336


>gi|305662754|ref|YP_003859042.1| translation factor SUA5 [Ignisphaera aggregans DSM 17230]
 gi|304377323|gb|ADM27162.1| translation factor SUA5 [Ignisphaera aggregans DSM 17230]
          Length = 359

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 100/342 (29%), Positives = 159/342 (46%), Gaps = 31/342 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + + + C+ +  G  I  PTETVYGL     N  A+R+++  K RP  NPLI H+S I
Sbjct: 15  DEDIIDRCCKAILNGAIIVFPTETVYGLGAYVYNVEAVRKIFIAKSRPMDNPLIVHISKI 74

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
             + + A  V  +   +A+ FWPGPLT++L       +    +  L T   R+P      
Sbjct: 75  DQLYEIAIDVPEIVNIIAENFWPGPLTILL--RKNRSVPKEVSGGLDTVAVRMPAHPVAL 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     P+A PSAN SG+ S T+  H+L         +I+D G +  G+ESTI+++  +
Sbjct: 133 KLIDCSGPIAAPSANISGRPSPTSPYHVLVDMFG-RADIILDAGETFFGVESTIIDILSD 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRAI 241
              ++LRPG + IE ++  ++  +E  V      E+    +PGM   HYAP++ + +   
Sbjct: 192 -PPKLLRPGAMPIEKIEEVLNKRIEIPVFALGYKESEKALAPGMKYKHYAPKTPLIIAKS 250

Query: 242 HV--NPREALIRFGNVP------------IKNIENAIISLN-------LSKTGKLKEAAF 280
               + R    +   +             + + E A I ++       L     L E A 
Sbjct: 251 RDYTDCRRYAEKVKKIAMDLIARGRNIAVVASTETADIYIDLNIKIFVLGSRKNLFEIAK 310

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           NLF  ++  D SG         P  G+GI I NRL +A+  R
Sbjct: 311 NLFGVLRELDRSGVDMAIVEGYPEKGIGITIMNRLIKASGYR 352


>gi|302380242|ref|ZP_07268714.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312025|gb|EFK94034.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 342

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 103/327 (31%), Positives = 163/327 (49%), Gaps = 19/327 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL KA E +  G  +A PTETVYGL  +  +  A ++++++K+R   NPLI HV++  M
Sbjct: 15  KALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDM 74

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           VK   + +      L    WPGPLT++     +  ++ + +    T   R P     + L
Sbjct: 75  VKNLSSEITEDQKKLMDNLWPGPLTIIF--KKSDKVNDVVSCGGDTVAIRNPSDEIARFL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN+SG+ S TN + + S  +  EI +I+DGG   IG+EST+V++  EK
Sbjct: 133 IDKSGCPIAAPSANKSGRPSPTNAQDVYSD-MQDEIEMILDGGSCNIGIESTVVDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVR-----LRA 240
              ILRPG    E L+  +   V  +  +D  + P+SPG    HYAP++++      +  
Sbjct: 191 PYTILRPGFYIKEDLEEYLDEVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGA 294
           I        I  G V     E    ++N      +SK       A N+F Y++  D    
Sbjct: 251 IQNYVDSLGINTGEVGFILTEETAKNVNFENVKIISKRNDYLNFAHNIFTYLRELDKFNY 310

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321
             +    +    +GI+I NRL+++ A 
Sbjct: 311 KLLICEGVNEQKMGISIMNRLKKSCAN 337


>gi|289423366|ref|ZP_06425174.1| SUA5 protein [Peptostreptococcus anaerobius 653-L]
 gi|289156297|gb|EFD04954.1| SUA5 protein [Peptostreptococcus anaerobius 653-L]
          Length = 349

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 98/337 (29%), Positives = 162/337 (48%), Gaps = 25/337 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + + +  + L  G  +  PTETVYGL  ++ +  A +++YE K RP+ NPL+ HV D
Sbjct: 14  IDQDIIEEFAKMLAEGKTVIFPTETVYGLGANALDEKAAQKIYEAKGRPSDNPLLVHVCD 73

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
              V      VD  +  L   FWPGPLT+V        I   ++  L T   R+P     
Sbjct: 74  KEDVYDLVEYVDDKAKILIDKFWPGPLTIVFKKKPI--IPDRTSGGLDTVAIRMPSDEIA 131

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++I   G P+A PSAN SG+ S T   HI+   +   +  I+ G     G+ESTIV+V 
Sbjct: 132 RRIIRAAGVPIAAPSANISGRPSPTRPDHIIRD-MTGRVDGILAGAPCTYGVESTIVDVS 190

Query: 185 CEKKVRILRPGGLEIETLKRAIS-VELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRA 240
            +  V +LRPG + +E +   +    L+  +   D+    ++PGM  +HY+PR++V +  
Sbjct: 191 GDYPV-VLRPGSVTLEMIAGVLGDARLDPSILNKDDNIKAKAPGMKYTHYSPRAEVYIVD 249

Query: 241 IHVNPREALIR--FGNVPIKNIENAIISLNLS------------KTGKLKE-AAFNLFNY 285
           +  +     I+   G       +  ++ +++               G+ +E AA  LF+ 
Sbjct: 250 LKGDDFVDKIKELVGQNADMGKKTGLMCMDIDMDRFDGVDIEIFSLGQTEEIAAKRLFDG 309

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +   D  G   I   +     +G+AI NRL+++A  R
Sbjct: 310 LIDLDKRGVDVIYSVAFEEKNVGVAIMNRLKKSAGYR 346


>gi|260888151|ref|ZP_05899414.1| SUA5 protein [Selenomonas sputigena ATCC 35185]
 gi|260862180|gb|EEX76680.1| SUA5 protein [Selenomonas sputigena ATCC 35185]
          Length = 377

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 171/372 (45%), Gaps = 56/372 (15%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++  T + A+ +A   L AG  +A PTETVYGL  +  +  A  ++YE K RP+ NPLI
Sbjct: 7   KVLPPT-AAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLI 65

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++  +M+ + A  V  ++ HL   F PGPLTLVL   +   +    T  L T   R+P
Sbjct: 66  LHIAHRAMLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAA--VPDRITGGLATVGVRMP 123

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI   G PLA PSAN SG+ S T  + +L   +   IPLI+DGG  + G+EST
Sbjct: 124 ENDAALALIRAAGFPLAAPSANTSGRPSPTTAETVL-EDLAGRIPLILDGGPCRFGVEST 182

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---------------------- 216
           IV+V  E  V ILRPG +  E L+  ++ V L+  +                        
Sbjct: 183 IVDVTGEAAV-ILRPGAITREMLEEVVADVRLDPGLAAQERAAQMSVGAMCPAAANSAEA 241

Query: 217 ---------TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII-- 265
                     + P++PGM  +HYAPR+ + L A       A  R            +I  
Sbjct: 242 SETAGMHTVAAAPRAPGMKYTHYAPRAPLTLLAAPPAALPAAFRAALAEAAGKSVGLIVT 301

Query: 266 ---------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
                           + L     ++  A +L+  ++  D+     I   ++   GLG+A
Sbjct: 302 DETAAALAGEAEEDFVVRLGARKDVRSIAAHLYEALRAFDEKKVDFILGEALDESGLGLA 361

Query: 311 INNRLERAAAPR 322
           I NRL++AA  R
Sbjct: 362 IMNRLKKAAGYR 373


>gi|304407777|ref|ZP_07389428.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus curdlanolyticus
           YK9]
 gi|304343260|gb|EFM09103.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus curdlanolyticus
           YK9]
          Length = 385

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 114/351 (32%), Positives = 161/351 (45%), Gaps = 49/351 (13%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  +A PTETVYGL  D+R  +A+  ++  K RP+ NPLI H++D + ++      
Sbjct: 31  LLRTGGTVAFPTETVYGLGADARQTSAVENVFVAKGRPSDNPLIVHIADEAQLRTLVKPY 90

Query: 78  -PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
                 L + FWPGPLTLVL  L    + P  TA L T   R+P      +LI   G P+
Sbjct: 91  GDTERALMRRFWPGPLTLVLPALEGA-VSPRVTAGLDTVAVRMPDHAVALRLIAESGCPV 149

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG+ S T  +H+    +   I  I+DGG + +GLEST+V V+    VRILRPG
Sbjct: 150 AAPSANRSGRPSPTVAEHV-REDLNGRIDGIVDGGPTGVGLESTVVQVEAPGVVRILRPG 208

Query: 196 GLEIETLKRAI-------SVELEYCVDETSTP-----------------------QSPGM 225
           G+    L+ A        S+E     D T  P                       +SPGM
Sbjct: 209 GITPVQLREAAPTVLLDESLEALERKDATMVPQERAVVSDSPAVGTATAVPAAAPRSPGM 268

Query: 226 LKSHYAPRSQVRLRAIHVNPREALIRFGNVPI---------------KNIENAIISLNLS 270
             +HYAPR  ++L     +   A I                          +A   ++  
Sbjct: 269 KYTHYAPRGSMQLVHGEPDDVRAYITKALQAAAAEGEITGVLTYDEHAASYHADAVISCG 328

Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
              KL+ AA  L+  ++  D  G   I   +  + G+G+A+ NRLE+AA  
Sbjct: 329 SLMKLETAAQGLYAALREFDARGVQRIWAEACSSDGIGLALMNRLEKAAGH 379


>gi|315500026|ref|YP_004088829.1| sua5/ycio/yrdc/ywlc family protein [Asticcacaulis excentricus CB
           48]
 gi|315418038|gb|ADU14678.1| Sua5/YciO/YrdC/YwlC family protein [Asticcacaulis excentricus CB
           48]
          Length = 309

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 117/310 (37%), Positives = 169/310 (54%), Gaps = 8/310 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L  G  I +PTETVYGL   + +PTA+ +++E K RP  NPLI HV+ +   +
Sbjct: 4   VADAIAALGRGELIHLPTETVYGLGARADDPTAVAKVFEAKGRPRFNPLIVHVASLEAAE 63

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
                D  +  LA+ FWPGPLTLV+ +  T  +  L+ A L +   RVP     + ++E 
Sbjct: 64  AIGVFDDRARDLAQAFWPGPLTLVVPVRDTQKVCDLARAGLDSVAIRVPSHPLARAILEG 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +   +  PSANRSG+ S T     LS +    +   +DGG  ++GLES++V++  E  VR
Sbjct: 124 FAGGVVAPSANRSGRPSPTRFADALSET-GGFVGASVDGGDCQVGLESSVVSLLGE--VR 180

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
            LRPG +    ++  +        D T   +SPG L  HYAP + V +   +       +
Sbjct: 181 YLRPGAVTRAEVEAVVG---PLADDATEGHRSPGRLSLHYAPDAPVNINVENPPADCVYL 237

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG V  K ++ A I LNLS  G+L EAA NLF Y++ AD    + I  + IP+ GLG A
Sbjct: 238 AFGPVD-KAVDFAGIILNLSPMGRLSEAAANLFAYLREADAHKPARICVAPIPSDGLGEA 296

Query: 311 INNRLERAAA 320
           IN+RL+RAA 
Sbjct: 297 INDRLKRAAG 306


>gi|325967731|ref|YP_004243923.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta moutnovskia
           768-28]
 gi|323706934|gb|ADY00421.1| Sua5/YciO/YrdC/YwlC family protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 375

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 162/343 (47%), Gaps = 33/343 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ +++A  ++  G  +A PTETVYGL  D+ N  A  +++  K RP  NPLI H+SDI
Sbjct: 28  DNSIIKEASNYIRNGYLVAFPTETVYGLGADTFNGEACLKIFRAKGRPPDNPLIVHISDI 87

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + + K A  +  +   + +  WPGPLTL+L    + DI    T    T   R P      
Sbjct: 88  NELDKVAIDIPEIIFPVIRKAWPGPLTLILP--KSPDIPKEVTGGRNTVAVRSPAHPVAL 145

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQ 184
            LI++ G P+A PSAN+SG+ S T  +HI+      +I +I +D G +  G+ESTI++V 
Sbjct: 146 ALIKSSGTPIAAPSANKSGRPSPTLAEHIIEDYANDDIEMILLDAGPTFFGVESTIIDVT 205

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
               V +LRPG   IE LK   +V++        + E  T  +PGM   HYAP +++ + 
Sbjct: 206 RNPPV-LLRPGPFTIEELKSLFNVDIVVPEFARGLGEADTALAPGMRYRHYAPHTRLIIV 264

Query: 240 AIHVNPR-------------EALIRFGNVPIKNIENAIISLN---------LSKTGKLKE 277
             + +                  ++   +  K   N ++            L        
Sbjct: 265 ECNDHDSLIKLLHDTLIDYLNKKLKVALLITKETANQLMKYPEINELPIIILGYRENTYT 324

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            A +LF+ ++  D           I   G+G+AI NRL +A+ 
Sbjct: 325 IAASLFDSLRNLDKINVDIGIAEGIEERGIGLAIMNRLRKASG 367


>gi|330840018|ref|YP_004414598.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC
           35185]
 gi|329747782|gb|AEC01139.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sputigena ATCC
           35185]
          Length = 375

 Score =  312 bits (801), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 171/372 (45%), Gaps = 56/372 (15%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++  T + A+ +A   L AG  +A PTETVYGL  +  +  A  ++YE K RP+ NPLI
Sbjct: 5   KVLPPT-AAAIEEAVHLLRAGEVVAFPTETVYGLGANGFDAAACAKIYEAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++  +M+ + A  V  ++ HL   F PGPLTLVL   +   +    T  L T   R+P
Sbjct: 64  LHIAHRAMLDEVALDVPEMAEHLLAAFAPGPLTLVLRRCAA--VPDRITGGLATVGVRMP 121

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI   G PLA PSAN SG+ S T  + +L   +   IPLI+DGG  + G+EST
Sbjct: 122 ENDAALALIRAAGFPLAAPSANTSGRPSPTTAETVL-EDLAGRIPLILDGGPCRFGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDE---------------------- 216
           IV+V  E  V ILRPG +  E L+  ++ V L+  +                        
Sbjct: 181 IVDVTGEAAV-ILRPGAITREMLEEVVADVRLDPGLAAQERAAQMSVGAMCPAAANSAEA 239

Query: 217 ---------TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII-- 265
                     + P++PGM  +HYAPR+ + L A       A  R            +I  
Sbjct: 240 SETAGMHTVAAAPRAPGMKYTHYAPRAPLTLLAAPPAALPAAFRAALAEAAGKSVGLIVT 299

Query: 266 ---------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
                           + L     ++  A +L+  ++  D+     I   ++   GLG+A
Sbjct: 300 DETAAALAGEAEEDFVVRLGARKDVRSIAAHLYEALRAFDEKKVDFILGEALDESGLGLA 359

Query: 311 INNRLERAAAPR 322
           I NRL++AA  R
Sbjct: 360 IMNRLKKAAGYR 371


>gi|303234993|ref|ZP_07321617.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4]
 gi|302493848|gb|EFL53630.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna BVS033A4]
          Length = 342

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 101/326 (30%), Positives = 162/326 (49%), Gaps = 19/326 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL KA E +  G  +A PTETVYGL  +  +  A ++++++K+R   NPLI HV++  MV
Sbjct: 16  ALEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDMV 75

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           K   + +      L    WPGPLT++     +  ++ + +    T   R P     + LI
Sbjct: 76  KNLSSEITEDQKKLMDNLWPGPLTIIF--KKSDKVNDVVSCGGDTVAIRNPSDEIARFLI 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G P+A PSAN+SG+ S TN + + S  +  EI +I+DGG   IG+EST+V++  EK 
Sbjct: 134 DKSGCPIAAPSANKSGRPSPTNAQDVYSD-MQDEIEMILDGGSCNIGIESTVVDLT-EKP 191

Query: 189 VRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVR-----LRAI 241
             ILRPG    E L+  +   V  +  +D  + P+SPG    HYAP++++      +  I
Sbjct: 192 YTILRPGFYTKEDLEEYLDEVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDNI 251

Query: 242 HVNPREALIRFGNVPIKNIENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGAS 295
                   I    +     E    ++N      +SK       A N+F Y++  D     
Sbjct: 252 QNYVDSLGINTDEIGFILTEETAKNVNFENVKIISKRNDYLNFAHNIFTYLRELDKFNYK 311

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAP 321
            +    +    +GI+I NRL+++ A 
Sbjct: 312 LLICEGVNEQKMGISIMNRLKKSCAN 337


>gi|169824779|ref|YP_001692390.1| translation factor [Finegoldia magna ATCC 29328]
 gi|167831584|dbj|BAG08500.1| translation factor [Finegoldia magna ATCC 29328]
          Length = 342

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 19/327 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            +L KA E +  G  +A PTETVYGL  +  +  A ++++++K+R   NPLI HV++  M
Sbjct: 15  KSLEKAAELIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEDM 74

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           VK   + +      L    WPGPLT++     +  ++ + +    T   R P     + L
Sbjct: 75  VKNLSSEITEDQKKLMDNLWPGPLTIIF--KKSDKVNDVVSCGGDTVAIRNPSDEIARFL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+  G P+A PSAN+SG+ S TN + + S  +  EI +I+DGG   IG+EST+V++  EK
Sbjct: 133 IDKSGCPIAAPSANKSGRPSPTNAQDVYSD-MQGEIEMILDGGSCNIGIESTVVDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVR-----LRA 240
              ILRPG    E L+  +   V  +  +D  + P+SPG    HYAP++++      +  
Sbjct: 191 PYTILRPGFYTKEDLEEYLDEVVYDKSLIDSNTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGA 294
           I        I    +     E    ++N      +SK       A N+F Y++  D    
Sbjct: 251 IQNYVDNLGINTDEIGFILTEETAENVNFENVKIISKRNDYLNFAHNIFTYLRELDKFNY 310

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321
             +    +    +GI+I NRL+++ A 
Sbjct: 311 KLLICEGVNEQKMGISIMNRLKKSCAN 337


>gi|159040867|ref|YP_001540119.1| Sua5/YciO/YrdC/YwlC family protein [Caldivirga maquilingensis
           IC-167]
 gi|157919702|gb|ABW01129.1| Sua5/YciO/YrdC/YwlC family protein [Caldivirga maquilingensis
           IC-167]
          Length = 358

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 97/337 (28%), Positives = 153/337 (45%), Gaps = 27/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +R A + +  G  +A PTETVYGL   + N  AIRR+Y +K RP  NP I H+S  
Sbjct: 19  DMALIRIAADVILKGGLVAFPTETVYGLGASTYNDDAIRRIYAVKNRPMDNPSIVHISSF 78

Query: 68  SMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           + + + A   P  L    K+ WPGPLT++L    ++ I  +++  L T   R+P      
Sbjct: 79  NQLYEVAEDIPSELEERLKVAWPGPLTVIL--RKSSRISEVASCGLSTVAVRMPAHPVAL 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     P++ PSAN SG+ S T  +H++   +  +I LIIDGG +  G+ESTI++   +
Sbjct: 137 ALIRESTPISAPSANISGKPSPTRAEHVIKD-LWGKIDLIIDGGETFFGVESTIIDYTKK 195

Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRL---- 238
             V + RPG   +E L+R        E    + +     +PGM   HYAP   + +    
Sbjct: 196 PPV-LYRPGPFTVEELRRIFGEIKVPEQALGLGQFKEALAPGMKYRHYAPDKPLIVTECS 254

Query: 239 --------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                           +    R  ++         ++     +     G L   A NLF+
Sbjct: 255 SLDGLVKLTLDLASDEVKRGKRVVVLCSSETCSTYVKAGFKVIEAGSRGNLYTVAKNLFH 314

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +++ D            P  G+G+AI NRL +A+  
Sbjct: 315 SLRLIDSMDVDLAVAEGYPEVGIGLAIMNRLRKASGY 351


>gi|297588759|ref|ZP_06947402.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516]
 gi|297574132|gb|EFH92853.1| Sua5/YciO/YrdC/YwlC family protein [Finegoldia magna ATCC 53516]
          Length = 342

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 97/327 (29%), Positives = 166/327 (50%), Gaps = 19/327 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +AL KA + +  G  +A PTETVYGL  +  +  A ++++++K+R   NPLI HV++  M
Sbjct: 15  SALEKAADLIKNGSVVAFPTETVYGLGANGLDEEACKKIFDVKRRKRDNPLILHVTNEEM 74

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           V+   + +      L    WPGPLT++     +  ++ + +    T   R P     + L
Sbjct: 75  VRNLSSEITEDQKKLMDNLWPGPLTIIF--KKSDKVNDVVSCGGNTVAIRNPSDEIARFL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    P+A PSAN+SG+ S TN + + S  +  EI +I+DGG   IG+EST+V++  EK
Sbjct: 133 IDKSDCPIAAPSANKSGRPSPTNAQDVYSD-MQGEIEMILDGGSCNIGIESTVVDLT-EK 190

Query: 188 KVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
              ILRPG    E L+  +   V  +  +D  + P+SPG    HYAP++++ +   +++ 
Sbjct: 191 PYTILRPGFYTKEDLEEYLDEVVYDKSLIDSKTIPKSPGQKYKHYAPKTKLIVIKGNMDN 250

Query: 246 REALIRFGNVPIKNI-----ENAIISLN------LSKTGKLKEAAFNLFNYMKIADDSGA 294
            +  +    +    I     E    ++N      +SK       A N+F Y++  D    
Sbjct: 251 IQNYVDSLEINTDEIGFILTEETAQNVNFKNVKIISKRNDYLNFAHNIFAYLRELDKLNY 310

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAP 321
             +    +    +GI+I NRL+++ A 
Sbjct: 311 KLLICEGVNEQKMGISIMNRLKKSCAN 337


>gi|312897941|ref|ZP_07757354.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera micronuciformis
           F0359]
 gi|310620975|gb|EFQ04522.1| Sua5/YciO/YrdC/YwlC family protein [Megasphaera micronuciformis
           F0359]
          Length = 350

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 149/333 (44%), Gaps = 25/333 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D N L +A   +  G  +  PTETVYG+  +  +  A R +Y  K RP+ NPLI  V D 
Sbjct: 15  DKNVLEEAGRLIRQGELVIFPTETVYGIGANGLDAAACRAIYTAKGRPSDNPLILTVPDK 74

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
           + V+   S + PL+  L + FWPGPLTLVL    T  +   +T  L T   R P     +
Sbjct: 75  AGVEAVVSYLPPLAETLIEKFWPGPLTLVLPRKDT--VPDAATGGLDTVALRCPDHAGCR 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + ++  G P+A PSAN SG+ S T         +   + +I+DGG   +G+ESTIV V  
Sbjct: 133 EFLKAAGVPVAGPSANLSGRPSPTTASEAF-HDMEGRVAMILDGGSCTVGVESTIVEVL- 190

Query: 186 EKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLR---- 239
           +  V +LRPG +  E L           + V     P++PGM   HYAP + VR+     
Sbjct: 191 DNVVTVLRPGAVTEEMLAEVAPYVTTDTHLVTGKGVPKAPGMKYRHYAPEAPVRVFVGSA 250

Query: 240 -------------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
                        A +   R   +    V  K+             G   E A  L+  +
Sbjct: 251 DQVSKAVGEVRTAAENDGKRLGYLLSREVIEKSEVTGKDVYCWGTHGNKTELAKELYRGL 310

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
              D+     I    +   G+G A+ NR+++AA
Sbjct: 311 LFFDEHPVDLIVAEGVETGGIGTAVMNRMKKAA 343


>gi|91218516|ref|ZP_01255455.1| Sua5/YciO/YrdC/YwlC [Psychroflexus torquis ATCC 700755]
 gi|91183347|gb|EAS69751.1| Sua5/YciO/YrdC/YwlC [Psychroflexus torquis ATCC 700755]
          Length = 318

 Score =  311 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 111/320 (34%), Positives = 177/320 (55%), Gaps = 18/320 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ + KA E L+    +AIPTETVYGLA +  +  AIR+++++K+RP  NPLI H+  I 
Sbjct: 5   SSDISKAIELLNKEDVVAIPTETVYGLAGNIYSEKAIRKIFQVKQRPLFNPLIVHIPSID 64

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++K A   P+ +  LA+ FWPG LTL+L     ++I  + T    T   R+P    T  
Sbjct: 65  QLEKVAREFPIKAQKLAEAFWPGSLTLILP--KKSNILEIVTGGKDTVGVRIPNHPVTLS 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++    PLA PSAN   +IS T+  H+        +P++++GG  K G+ESTI+  +  
Sbjct: 123 LLKQLSFPLAAPSANPYNRISPTSSYHV-EGYFGNALPMVLEGGECKNGIESTIIGFENN 181

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN-- 244
           + + + R G + +E +++ I  +++      +TP +PGML  HYAP++++ L        
Sbjct: 182 EAI-LYRLGAISVEEIEKIIG-KIQIRNKSDTTPNAPGMLAKHYAPKTKMYLLDDIDEFI 239

Query: 245 -----PREALIRF-GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
                 +  ++RF G +     E+  I   LSK+G LKEAA  L++ +   D+     I 
Sbjct: 240 ENNKSKKIGVLRFQGKLNTTRFEHIEI---LSKSGDLKEAASKLYSTLHKLDNLNLDIIV 296

Query: 299 FSSIPNHGLGIAINNRLERA 318
               P+ GLG +IN+RLERA
Sbjct: 297 AERFPDVGLGKSINDRLERA 316


>gi|227824239|ref|ZP_03989071.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904738|gb|EEH90656.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 350

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 100/322 (31%), Positives = 156/322 (48%), Gaps = 22/322 (6%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-V 76
            +  G  +A PTETVYGL  +  +  A R+++  K RPA NPLI H+++   ++     +
Sbjct: 1   MIRKGEVVAFPTETVYGLGANGLDGMACRKIFAAKGRPADNPLILHIAEKEDMEALTKGL 60

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
            P++  L + FWPGP+TL++    +  I  + TA L T   R P     + LI   G P+
Sbjct: 61  SPMAQALMEAFWPGPMTLIVP--KSDKIPDVVTAGLDTVAVRFPSHPVARDLIRAAGCPI 118

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN+SG+ S T  + +L   +   I  ++DGG   IG+ESTI++   +  V ILRPG
Sbjct: 119 AAPSANKSGKPSPTTAQDVLLD-MDGIIAGVLDGGACDIGVESTIIDTTGKDPV-ILRPG 176

Query: 196 GLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           G+  E +K A+         V +  TP++PGM   HYAP + + L          +    
Sbjct: 177 GITREMIKMAMGRVALDPGLVKKGETPKAPGMKYRHYAPTAPMLLVEGPEASLGLIRLAI 236

Query: 254 NVPIKNIENAIISL-----NLSKTGK---------LKEAAFNLFNYMKIADDSGASSIAF 299
                 +   +I+L     +  K G          L+  A  LF+ ++  D  G   I  
Sbjct: 237 MAEAHGLRTGVIALKATVDHFPKGGNFVIHNGGATLEAYAGTLFHDLRAFDSEGVDLILG 296

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
             +    +G+AI NRL ++A  
Sbjct: 297 EGVREDQMGLAIMNRLRKSAGH 318


>gi|119871892|ref|YP_929899.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673300|gb|ABL87556.1| translation factor SUA5 [Pyrobaculum islandicum DSM 4184]
          Length = 349

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 95/328 (28%), Positives = 161/328 (49%), Gaps = 17/328 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ +R A E L  G  +A PTETVYGL   + +     ++++ K+RP  NPLI HV  +
Sbjct: 12  DADVIRFAAEVLKRGGIVAAPTETVYGLFTHAYSDGGCAKVFKAKERPPDNPLIVHVDSV 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            M  + A +    + + +  WPGP+TLV+       +    TA L T   R P       
Sbjct: 72  EMAAQIAYIPEEIVDVLRRIWPGPITLVMKSRGA--VSRCVTAGLDTVAVRAPAHPIPLA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+    P+A PSAN++G+ S T  +H++   +  E+ +IIDGG +  G+ESTI++V  +
Sbjct: 130 IIKELEAPIAGPSANKAGRPSPTTAEHVV-EDLNGEVDVIIDGGPTFFGVESTIIDVTRK 188

Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             + +LRPG   +E L++         +   + ET    +PGM   HYAP + + +    
Sbjct: 189 PPI-LLRPGPFTVEELEKYFGPVEIPPVARGLIETDVALAPGMKYKHYAPNTPLVIVHFD 247

Query: 243 VNPREALIRFGNVPIKNI------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           ++     +R   + +  +       NA + + +     L E A NL+  ++  D      
Sbjct: 248 LSLAVETLRSKGLKVAVLCATGRCTNADVVIKMG--DDLYEVAKNLYRSLRELDRFSVDI 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQ 324
               ++   G+G+AI NRL +A+  R  
Sbjct: 306 GVVPAVEETGIGLAIMNRLRKASGHREA 333


>gi|227499752|ref|ZP_03929852.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus tetradius ATCC
           35098]
 gi|227218138|gb|EEI83404.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus tetradius ATCC
           35098]
          Length = 349

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 22/334 (6%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
              D   + KA  +L  G  +AIPTETVYGL  +  +  A   +++ K RPA NPLI H+
Sbjct: 16  KNIDQEKIIKAANYLKEGKLVAIPTETVYGLGANGLDEKACVNIFKTKNRPADNPLILHI 75

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           S+I M+      V+  +  L K  WPGPLT++     +  I  + TA   T   R P   
Sbjct: 76  SNIDMLYNLVENVNDDAKKLMK-LWPGPLTMIF--KKSDLIPDVVTAKGDTVAVRFPVDE 132

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + +IE    P+A PSAN SG+ S TN        +  +IPLIIDGG   IG+EST+++
Sbjct: 133 IARAIIEKANVPIAAPSANISGRPSPTNAYDCYYD-LNGKIPLIIDGGSCDIGIESTVID 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +  E    ILRPG   +E ++  I      +  VD+   P+SPG    HYAP++++++  
Sbjct: 192 M-SENPPTILRPGYYTLEMIREIIPEVRLDDALVDDNKIPKSPGQKYKHYAPKARMQVYV 250

Query: 241 IHVNPREALIRFGNVPIKNIENAIISL-------------NLSKTGKLKEAAFNLFNYMK 287
                     +        +   ++               +      L + +  LF  ++
Sbjct: 251 GKGAADFIYKKARAYSNSGLHVGVLVFEEDMERFKDFDRISFGDRDDLSQMSHVLFTALR 310

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             D  G   I    + ++ LG +I NR++++AA 
Sbjct: 311 KMDKMGVDLILAEGVLDNNLGKSIMNRMKKSAAG 344


>gi|303228444|ref|ZP_07315277.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516946|gb|EFL58855.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 344

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 105/345 (30%), Positives = 160/345 (46%), Gaps = 30/345 (8%)

Query: 1   MQIMSITD--SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           M+   IT+     L+     L  G  +AIPTETVYGL  +  +  A+ ++Y  K RP+ N
Sbjct: 1   METKIITELTKENLQLVAYALRHGDVVAIPTETVYGLGANGLDADAMDKIYAAKGRPSDN 60

Query: 59  PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI HV +   +K      P +   L + FWPGPLT+ L    +  +   +T  L     
Sbjct: 61  PLILHVPNAESIKPLVKEIPETAKALIEAFWPGPLTITLP--KSDLVPDRATGGLARVAL 118

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R P     + ++E  G P+A PSAN SG+ S T  + +    +   IP I+D GI  IG+
Sbjct: 119 RCPDHAVCRNILELAGVPIAAPSANISGRPSPTTAQSVY-DDMNGRIPYIVDAGICTIGV 177

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRS 234
           EST+V V+ +  V ILRPGG+  E L++ +       +   +   P++PGM   HYAP +
Sbjct: 178 ESTVVEVRDDG-VTILRPGGITKEMLEQVVDNVSYDPFLSSQNEAPKAPGMKYKHYAPDA 236

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISL------------------NLSKTGKLK 276
            +R  A   NP++    F NV  +        L                      +G   
Sbjct: 237 PMR--AFIGNPKDVAETFSNVIREQETKRGAFLVSQETYDLLKDSVHGEFHVYGHSGDAV 294

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A + +  +   ++     I    + N GLG+A+ NR+E+A A 
Sbjct: 295 ALAHDFYKTLHHFNECDVDYILAEGVVNTGLGVAVMNRMEKACAG 339


>gi|83815217|ref|YP_445718.1| SUA5 protein [Salinibacter ruber DSM 13855]
 gi|83756611|gb|ABC44724.1| SUA5 protein [Salinibacter ruber DSM 13855]
          Length = 330

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 110/319 (34%), Positives = 168/319 (52%), Gaps = 7/319 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ T + +  +A + L  G  +A PTETVYGL  D+  P A+RR++E K RPA NPLI H
Sbjct: 16  VATTRTTSPTEAADRLRRGELVAFPTETVYGLGADAFQPDAVRRIFEAKGRPADNPLIVH 75

Query: 64  VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           +     + +  A V  ++ HL   F PGPLTL+L      D+  + TA L+T   RVP  
Sbjct: 76  LRRRDQIGQVAARVPSVAQHLLDAFAPGPLTLILP--KHEDLPSVVTAGLETVGVRVPRL 133

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+  +E    P+  PSANRSG+ S T+ + +    +   I  I+ GG +  G+EST+V
Sbjct: 134 PLTQSFLEACDTPVPAPSANRSGRPSPTSWEAV-EHDLAGRIDCILQGGRTDAGVESTVV 192

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +   +    +LRPG + +E+L+RA+        D    P+SPG    HYAP +QVRL   
Sbjct: 193 DCTTD-PATVLRPGAVSVESLRRALGAVQVPSSDADEAPRSPGTRHRHYAPSAQVRLVE- 250

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
             +   +  R   V +    +      +     +K  A +LF+  +  D++    I   +
Sbjct: 251 DPSEAVSGDRHAYVGLDVPPHPDALGAVYVEESVKAYAHDLFHIFRTCDENEVEVIYAQT 310

Query: 302 IPNHGLGIAINNRLERAAA 320
           +P +GLG A+N+RL RAAA
Sbjct: 311 VPPNGLGRALNDRLRRAAA 329


>gi|145591558|ref|YP_001153560.1| Sua5/YciO/YrdC/YwlC family protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283326|gb|ABP50908.1| translation factor SUA5 [Pyrobaculum arsenaticum DSM 13514]
          Length = 358

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 94/326 (28%), Positives = 152/326 (46%), Gaps = 13/326 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +R A   L  G  +A PTETVYGL   +       ++++ K RP  NPLI HV  +
Sbjct: 27  DPSVIRTAAGVLRNGGIVAAPTETVYGLFAHAYREDGCAKVFKAKGRPMDNPLIVHVDTV 86

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            M    A +      + +  WPGP+T+V+       +    TA L T   R P       
Sbjct: 87  EMAMAVADIPNDVAEVLRRVWPGPITVVVPSRGV--VARCVTAGLPTVAVRAPAHPIPLS 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+  G P+A PSAN++G+ S T   H++   +  E+ ++IDGG +  G+ESTI++V   
Sbjct: 145 IIKELGAPIAGPSANKAGRPSPTTAGHVV-EDLDGEVDVVIDGGPTFFGVESTIIDVTKR 203

Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             V +LRPG   +E L++         +   + E     +PGM   HYAP + + +    
Sbjct: 204 PPV-VLRPGPFTVEELEKLFGPVSVPPVARGLAEADVALAPGMKYRHYAPDTVLVIVHFD 262

Query: 243 VNPREALIRFGNVPIKNI----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
           +      +R   + +  +    + A  +  +     L E A NL+  ++  D  G     
Sbjct: 263 LAEAVQTLRARGLKVAVLCATGKCAEANYVIQMGDDLYEVARNLYKSLRDLDKLGVDIGV 322

Query: 299 FSSIPNHGLGIAINNRLERAAAPRNQ 324
             +I   G+G+AI NRL +A+  R  
Sbjct: 323 VPAIEERGVGLAIMNRLRKASGHREA 348


>gi|222098797|ref|YP_002532855.1| sua5/ycio/yrdc/ywlc family protein [Bacillus cereus Q1]
 gi|221242856|gb|ACM15566.1| sua5/yciO/yrdC/ywlC family protein [Bacillus cereus Q1]
          Length = 298

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/296 (33%), Positives = 150/296 (50%), Gaps = 19/296 (6%)

Query: 41  NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLL 99
           N  AI +++E K RP+ NPLI H+   S +      + P++  L + FWPGPLT++L   
Sbjct: 2   NDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILPRK 61

Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
               I    TA L T   R+P       LIE    P+A PSANRSG+ S T   H+    
Sbjct: 62  EG--ISEKVTAGLHTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVY-ED 118

Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DE 216
           + ++I  I+DGG + +G+EST+++        ILRPGG+  E L+  I  V L+  + DE
Sbjct: 119 LNEKIAGIVDGGATGVGVESTVIDCTSAVP-TILRPGGITKEQLEAVIGTVSLDPALKDE 177

Query: 217 TSTPQSPGMLKSHYAPRSQV--------RLRAIHVNPREALIRFGNVPIKN---IENAII 265
              P+SPGM  +HYAP++ +         ++ +    +E   + G +  +    I NA +
Sbjct: 178 KEKPKSPGMKYTHYAPKAPLSIVEGSREFIQRLVDEKKEEGFKVGVLTTEEYHHIYNADV 237

Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            L+      L   A  L++ ++  D S    I   S PN G+G AI NRL +AA  
Sbjct: 238 VLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAGH 293


>gi|47570467|ref|ZP_00241100.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus G9241]
 gi|47552863|gb|EAL11281.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus cereus G9241]
          Length = 299

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 19/302 (6%)

Query: 41  NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLL 99
           N  AI +++E K RP+ NPLI H+   S +      + P++  L + FWPGPLT++L   
Sbjct: 2   NDEAIAKIFEAKGRPSDNPLIVHIGTKSQLDGIVKEIPPVAEKLMEHFWPGPLTIILPRK 61

Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
               I    TA L T   R+P       LIE    P+A PSANRSG+ S T   H+    
Sbjct: 62  EG--ISERVTAGLNTVGVRMPDHPVALALIEEANVPVAAPSANRSGRPSPTLASHVY-ED 118

Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCV-DE 216
           + ++I  I+DGG + +G+EST+++        ILRPGG+  E L+  I  V L+  + DE
Sbjct: 119 LNEKIAGIVDGGATGVGVESTVIDCTSAVP-TILRPGGITKEQLEAVIGMVSLDPALKDE 177

Query: 217 TSTPQSPGMLKSHYAPRSQV--------RLRAIHVNPREALIRFGNV---PIKNIENAII 265
              P+SPGM  +HYAP++ +         ++ I    +E   + G +     +++ +A +
Sbjct: 178 KEKPKSPGMKYTHYAPKAPLSIVEGSREFIQLIVDKKKEEGFKVGVLTTEEYQHVYSADV 237

Query: 266 SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            L+      L   A  L++ ++  D S    I   S PN G+G AI NRL +AA  +  +
Sbjct: 238 VLSCGVRSDLASVATKLYDVLRTFDASEVDVIFSESFPNEGIGNAIMNRLTKAAGHQIIT 297

Query: 326 QR 327
           + 
Sbjct: 298 ES 299


>gi|311745837|ref|ZP_07719622.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
 gi|126576040|gb|EAZ80318.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
          Length = 321

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 128/318 (40%), Positives = 177/318 (55%), Gaps = 13/318 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + KA  FLD G  +AIPTETVYGLA ++ NP A+  ++E K RP+ +PLI H S +  V
Sbjct: 7   DIAKAKRFLDEGKLVAIPTETVYGLAGNALNPLAVASIFETKNRPSFDPLIIHTSSMDRV 66

Query: 71  KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           K      P     L K  WPGPLTL+L   +   I  L T+ L     R+P    T +L+
Sbjct: 67  KDFVEEIPDPLYKLGKSIWPGPLTLLLPRKAI--IPDLVTSGLDRVAIRIPNHPLTLELL 124

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E+   PLA PSAN  G IS T  +H+  + +   IP I+DGG  ++GLESTIV ++ E +
Sbjct: 125 ESLDFPLAAPSANPFGYISPTQPRHV-EAQLGDSIPYILDGGNCQVGLESTIVGME-EGQ 182

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           V I R GGLE+  ++  I   ++     TS PQ+PG+L SHYAPR    L  + +   + 
Sbjct: 183 VVIYRLGGLELNEIEDLIG-PVQVKSHSTSNPQAPGLLASHYAPRKPFVLGDLDLLIEKY 241

Query: 249 LIRFGNVPIKNIENA------IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +   +  + ++E +         + LSK G LKEAA NLF  M+  D+     I    +
Sbjct: 242 SLEGTSFALISLEKSFSDIPEAHQIALSKNGDLKEAAKNLFASMRQLDELDVEVILAEKM 301

Query: 303 PNHGLGIAINNRLERAAA 320
           P  GLG AIN+RL+RAAA
Sbjct: 302 PAKGLGQAINDRLKRAAA 319


>gi|295100870|emb|CBK98415.1| translation factor SUA5 [Faecalibacterium prausnitzii L2-6]
          Length = 341

 Score =  310 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/335 (31%), Positives = 166/335 (49%), Gaps = 20/335 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   D+  + +A E L  G  +A+PTETVYG+A D+RN  A+ +++  K RP  NPLI H
Sbjct: 7   VRPADTAGIARAAELLRQGELVALPTETVYGIAADARNGEAVSKIFVAKGRPQDNPLIVH 66

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V+   M+      V   +  L   F PGPLT+++      ++     A L T   R+P  
Sbjct: 67  VTGPEMLHGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVAAECCAGLDTVGIRMPSH 124

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + +IE  G   A PSAN SG+ S TN + + +  +   +PLI+DGG    G+EST+V
Sbjct: 125 PVARAVIEASGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDWGVESTVV 183

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYAPRSQ 235
           +V  EK   + RPG + +E L+RA+  E+E        + E +  +SPGM   HYAP++ 
Sbjct: 184 SVVGEKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYAPKAD 242

Query: 236 VRLRAIHVNPREALIRFGNVPI--------KNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
           V L        +A +               +  +  +  +   + G   + A ++F  ++
Sbjct: 243 VTLLDGTFEQFKAYVDAHAAEDPSCLCFTGEAEKLGVPCVEYGREGDGADQAKHIFRSLR 302

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
             D+ G + +        GL +A+ NRL RAAA R
Sbjct: 303 ALDEQGDAVVYARCPQKDGLSMAVYNRLIRAAAFR 337


>gi|312129757|ref|YP_003997097.1| translation factor sua5 [Leadbetterella byssophila DSM 17132]
 gi|311906303|gb|ADQ16744.1| translation factor SUA5 [Leadbetterella byssophila DSM 17132]
          Length = 314

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/312 (35%), Positives = 166/312 (53%), Gaps = 12/312 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KA   L+AG  +AIPTETVYGLA ++ NP A+ +++E K RP+ +PLI H+S  + 
Sbjct: 6   KDIQKAKAILEAGGLVAIPTETVYGLAANALNPKAVAKIFEAKNRPSFDPLIIHISTFAE 65

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + K+ S     L  +A  FWPGPLT++L       I  + T+ L+    RVP    T  L
Sbjct: 66  LYKYTSQSLGQLTEIANKFWPGPLTVLLPKRDI--IPDVVTSGLERVAVRVPQHELTLSL 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + +   PLA PSAN  G +S T  +H+    +  ++  I+DGG  ++G+ESTI+ ++   
Sbjct: 124 LSSIDFPLAAPSANPFGYVSPTTAQHVY-DQLAGKVDYILDGGPCQVGVESTIIGIEVAD 182

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA--IHVNP 245
            + + R GGL IE L+R    ++       S P +PGMLK HY+P  QV +       + 
Sbjct: 183 -LVVYRKGGLAIEDLERNFEGKVRVNDFSASNPSAPGMLKKHYSPDKQVLVYKEGESYDK 241

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
             A +RF       I        LS++  L EAA  LF  ++  D     +I    +P  
Sbjct: 242 ETAFLRF----SSPISGYSYQFVLSESADLAEAAARLFQGLRALDQMPVKTIVIEFVPEV 297

Query: 306 GLGIAINNRLER 317
           GLG AIN+RL R
Sbjct: 298 GLGRAINDRLRR 309


>gi|291543207|emb|CBL16316.1| translation factor SUA5 [Ruminococcus sp. 18P13]
          Length = 341

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 108/326 (33%), Positives = 154/326 (47%), Gaps = 16/326 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA   +  G  + +PTETVYGLA D+ N  A+ +++  K RP  NPLI H+S +
Sbjct: 9   DEAGLQKAAGLIREGQVVGMPTETVYGLAADATNRDAVAKVFAAKGRPMDNPLIVHISSM 68

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +++  S V  L   LA  FWPGPLT+++    +  I   ++  L T   R+P     +
Sbjct: 69  EELEQAVSRVPELVASLADAFWPGPLTMIMP--KSELIPMETSGGLDTVGVRMPSHPVAQ 126

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSANRSG  S T  +H+L + +   IP I+DGG    GLEST+V    
Sbjct: 127 ALIRIAGVPIAAPSANRSGYPSPTTAQHVL-ADMQGRIPAILDGGACSCGLESTVVAFDD 185

Query: 186 EKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           ++ VRILRPG +  E L        I   +   V  +    SPGM   HYAP + V L  
Sbjct: 186 DRTVRILRPGFVTKEMLLEHVPNVVIDPAIFRQVSASEKVASPGMKYKHYAPNAAVTLVE 245

Query: 241 IHVNPREALIRFGNVP------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
                    +                       +++  G   E    LF  ++  D  GA
Sbjct: 246 GSPELFRQFLALQQADGVYALIFDGDAEQFPYPHMTYGGTSIEQGRQLFARLRELDQIGA 305

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
            ++        G+G+A+ NRL RAA 
Sbjct: 306 KTVYVRMPQKDGVGLAVYNRLIRAAG 331


>gi|134080269|emb|CAK97172.1| unnamed protein product [Aspergillus niger]
          Length = 397

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/356 (29%), Positives = 168/356 (47%), Gaps = 45/356 (12%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ A+  A + L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HV  
Sbjct: 39  EAAAIEDAAQLLRTSDIPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIIHVDS 98

Query: 67  ISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           + M+++  +                + P+   +   FWPGPLT++L   S + + P  T+
Sbjct: 99  LGMLERLLNPTQESPSRRTSTAKNAIPPIYDSVISRFWPGPLTILLPNPSGSPLAPEVTS 158

Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   R+P     + LI     PLA PSAN S + S T  +H+    +   I LI+DG
Sbjct: 159 KLTTFGVRMPSSPLARLLIHVTDRPLAAPSANASTKPSPTAAEHVF-HDLEGRIELILDG 217

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSP 223
           G   +G+EST+V+   +    ILRPGG+ IE L+     E       +  +D    P++P
Sbjct: 218 GPCGVGVESTVVDGLSDPPA-ILRPGGIGIEELRTCAGWENVQVGYHDGTLDVKEIPRAP 276

Query: 224 GMLKSHYAPRSQVRL--------------RAIHVNPREALIRFGNVPIKNIENAII---S 266
           GM   HY+P+++V L              R    +        G V  ++ +       +
Sbjct: 277 GMKYRHYSPKARVVLFEAGSDEEAVTRHIRKDLEDSAIGAHMIGVVRTQHWKRGTATKET 336

Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAAA 320
            +      +K  A  LF+ ++  D+     I    +P+H   L  A+ NRL +AA 
Sbjct: 337 FDCHLGTDVKSIAQGLFSALRAMDEMEVDVIYVEGVPDHQGDLAAAVMNRLRKAAG 392


>gi|67539818|ref|XP_663683.1| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4]
 gi|40738864|gb|EAA58054.1| hypothetical protein AN6079.2 [Aspergillus nidulans FGSC A4]
          Length = 1588

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 161/382 (42%), Gaps = 74/382 (19%)

Query: 11   ALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+ +A   L      +A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H+  + M
Sbjct: 1204 AIAEAANLLRTSDVPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLQM 1263

Query: 70   VKKH---------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
            + +                +++ P+   L + FWPGPLT++L   S + + P  T+NL T
Sbjct: 1264 LNRLLNPASDTSCPTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPEVTSNLTT 1323

Query: 115  ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
               R+P     + LI     PLA PSAN S + S T  +H+    +   I LI+DGG   
Sbjct: 1324 FGVRMPLSPLARLLIHVADRPLAAPSANASTKPSPTAAEHVF-HDLQGRIELILDGGPCG 1382

Query: 174  IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLK 227
            +G+EST+V+        ILRPGG+ IE L+     E       +   D    P++PGM  
Sbjct: 1383 VGVESTVVDGLSN-PPSILRPGGVSIEELRTCPGWENVQLAYHDGTYDVKEIPRAPGMKY 1441

Query: 228  SHYAPRSQVRLRAIHVNPREALIRFGN--------------------------VPIKNIE 261
             HY+P+++V L       +  +                               +P ++IE
Sbjct: 1442 RHYSPKARVVLFEAGSKSQAIVDHVKRDLQDTAVGAHSIGLVRTRTWKRGLQLLPEEDIE 1501

Query: 262  NAII----------------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
                                        +      +K+ A  LF  ++  D+     I  
Sbjct: 1502 KMAKATASLVGSLVQFSIPVGGKTKEVFDCHLGTDVKDIARGLFAALRAMDEKQVDVIYV 1561

Query: 300  SSIPNHG-LGIAINNRLERAAA 320
              + +   L  A+ NRL +AA 
Sbjct: 1562 EGVSDTEYLAAAVMNRLRKAAG 1583


>gi|217076581|ref|YP_002334297.1| universally conserved protein [Thermosipho africanus TCF52B]
 gi|217036434|gb|ACJ74956.1| universally conserved protein [Thermosipho africanus TCF52B]
          Length = 337

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 19/333 (5%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     +   L + C  + +G  +A PTETVYGL   +    A+  ++++K R   
Sbjct: 4   KILKIDPLDFNEKDLIEVCNVIKSGGLVAFPTETVYGLGASAFEEKAVDNIFKVKGRAKD 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           NPLI HV     + + A V            PGP+T VL      ++    TA LKT   
Sbjct: 64  NPLIVHVDRFEKLLEIAEVAEKYFEAINKLTPGPVTFVLKQ--KINLPKNVTAGLKTVGV 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P     + +     P+A PSAN SG+ S T+ + ++   +  +I  IID G S+ GLE
Sbjct: 122 RIPAHPVARKLCKCAGPIAAPSANLSGKPSPTDSQAVI-EDLFGKIDFIIDAGNSEFGLE 180

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETST---PQSPGMLKSHYAPR 233
           STI+++  E  + +LRPG + IE L+     VE+   V + S+   P++PGM   HYAP 
Sbjct: 181 STIIDLTSEIPI-VLRPGPITIEQLESIFGKVEIPQFVIDASSVENPKAPGMKYRHYAPE 239

Query: 234 SQVRLRAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYM 286
             V         +          +       K        + L K  +    A NLF  +
Sbjct: 240 KPVYRFNKVQREKVIKKALSENGVFICPEEHKKFYPDDRIMILGKLSEPYSIAQNLFKVL 299

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +  D S  +     +    G+ +++ NRL++A+
Sbjct: 300 REFDRSNFNVAFIEAFEEKGILLSVMNRLKKAS 332


>gi|121534884|ref|ZP_01666703.1| Sua5/YciO/YrdC/YwlC family protein [Thermosinus carboxydivorans
           Nor1]
 gi|121306483|gb|EAX47406.1| Sua5/YciO/YrdC/YwlC family protein [Thermosinus carboxydivorans
           Nor1]
          Length = 346

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/333 (32%), Positives = 157/333 (47%), Gaps = 22/333 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A + L  G  +A PTETVYGL  +  +  A  R+Y  K RP+ NPLI H++D 
Sbjct: 14  DKRILAEAADILRRGGLVAFPTETVYGLGANGLDAQAAARIYAAKGRPSDNPLILHIADS 73

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             V   A  +   +  L   +WPGPLT+VLD   T  +    T  L T   R+P     +
Sbjct: 74  GDVALLARRIPANAAALMARYWPGPLTIVLDR--TDVVPDAVTGGLSTVAVRLPASTVAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G P+A PSAN SG+ S T  + +L + +   I  ++D G   IG+EST+V+   
Sbjct: 132 ELIRLAGVPVAAPSANTSGRPSPTTAQAVL-ADLSGRIDAVLDAGPCDIGVESTVVDCTT 190

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDE-TSTPQSPGMLKSHYAPRSQVRLRAIHV 243
                +LRPGG+ +E L   +  VEL+  + E T+TP+SPGM  +HYAP + + L     
Sbjct: 191 PVP-TLLRPGGITLEMLLETLGEVELDSALAESTATPRSPGMKYTHYAPAAPMTLVEGAG 249

Query: 244 NPREALIRFGNVPIKN--------------IENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                  +                      + +A++             A NL+  ++  
Sbjct: 250 AAAMVRRKVTEALAAGWRVGAVVSAETAALLPSAVVKAVYGPRDDAAAIAANLYQALRHF 309

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D      I    I   GLG+A+ NRL +AA  R
Sbjct: 310 DACPVDVIYAEGITESGLGLAVMNRLRKAAGYR 342


>gi|229551969|ref|ZP_04440694.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1]
 gi|229314704|gb|EEN80677.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus LMS2-1]
          Length = 340

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 104/325 (32%), Positives = 164/325 (50%), Gaps = 15/325 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D +
Sbjct: 7   ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAA 66

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           MV ++A++ P +  L   FWPGPLT++L++L    +    T  L+TA FR P    T+KL
Sbjct: 67  MVSQYATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I T G P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ESTI+++    
Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTP 184

Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
              ILRPG +    L+  +       + V +   P++PGM   HYAP +QV +       
Sbjct: 185 PA-ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQF 243

Query: 246 REALIR-------FGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIAD-DSGASS 296
            +A+         FG +   +I      +     G  +  A   LF  ++  D     + 
Sbjct: 244 DDAVAWAKKTGQTFGLLATDSILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTL 303

Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321
           +   +  +  L  A  NRL ++A  
Sbjct: 304 VLAQAFSHSELSAAYMNRLLKSAGN 328


>gi|296284822|ref|ZP_06862820.1| putative translation factor [Citromicrobium bathyomarinum JL354]
          Length = 323

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 114/321 (35%), Positives = 168/321 (52%), Gaps = 14/321 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  + +  + L  G  +A+PTETVYGLA  + +  A+ R++  K RP+ NPLI HVSD+
Sbjct: 13  DSTGIARTAQILRDGGLVAVPTETVYGLAARADSEDAVSRIFAAKGRPSFNPLIVHVSDV 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              +   +++P +L LA  FWPGPLTLVL       +     A L T   R P     + 
Sbjct: 73  QQAEALVTMEPRALALAARFWPGPLTLVLPRHENAAVASSIHAGLPTLAVRCPAHPVMRA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +++    P+A PSAN S  +S T  +H+L +++   I  ++D G S+ GLESTIV ++ +
Sbjct: 133 VLDELAIPVAAPSANASETVSPTTAEHVL-ATLDGRIDSVLDAGASERGLESTIVALRAD 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               +LR G +  E L+  +  E      +    ++PG ++ HYAP   +RL A      
Sbjct: 192 GGWSLLREGPIGREVLEDMLGSE----ASDGRGIEAPGQMRRHYAPGKPLRLNARKAEAG 247

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E LI FG V           + LS TG + EAA  L+  + +   S    IA + +P   
Sbjct: 248 EFLIGFGAVEGD--------VTLSATGDVNEAATRLYGCLHLGAASDKPLIAVAPVPEDA 299

Query: 307 LGIAINNRLERAAAPRNQSQR 327
           +G AIN+RL RAAAP    QR
Sbjct: 300 VGRAINDRLRRAAAPPEGDQR 320


>gi|307298419|ref|ZP_07578222.1| Sua5/YciO/YrdC/YwlC family protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915584|gb|EFN45968.1| Sua5/YciO/YrdC/YwlC family protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 345

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 104/330 (31%), Positives = 151/330 (45%), Gaps = 22/330 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA  F+  G  +  PTETVYGL  ++ + +AI ++Y  K RP  NPLI HVS  
Sbjct: 14  DEFRLKKAARFIRDGELVVFPTETVYGLGANALDESAISKIYHAKGRPQDNPLIVHVSSR 73

Query: 68  SMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125
            MV    S +      L    WPGP+TL+        I    TA L T   R P      
Sbjct: 74  EMVADLVSQNLSEYSALMDTVWPGPVTLIFRKRK--RIPDSVTAGLDTVAIRFPSHPVAS 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLIE    P+A PSAN SG+ S T  +H++   +   +  II  G +  GLESTI+++  
Sbjct: 132 KLIELSCVPVAAPSANLSGKPSPTREEHVV-EDMDGRVSCIILSGSTVFGLESTIIDLSR 190

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST----PQSPGMLKSHYAPRSQVRLRA 240
           E+ V +LRPG ++ + LK  +  +++             P SPG+   HY+P   + L  
Sbjct: 191 ERPV-LLRPGPIDPDQLKGVLPDLQIPGFASGREQYLGDPLSPGLKYRHYSPDIPLILVE 249

Query: 241 IH-----------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                           + +L+             +  + L     L E A NLF  ++  
Sbjct: 250 GELGLVVSKVGIIAGRKSSLVLCSEELRDYYPVQVKKVVLGSRSNLLEVASNLFKELRDK 309

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++   S I     P  G+G+AI NRL +AA
Sbjct: 310 ENMSFSQIIAEPFPETGVGLAIMNRLRKAA 339


>gi|257066248|ref|YP_003152504.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii DSM
           20548]
 gi|256798128|gb|ACV28783.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus prevotii DSM
           20548]
          Length = 344

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 155/331 (46%), Gaps = 20/331 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D + +++A   L  G  +AIPTETVYGL  +  +  A   +++ K RPA NPLI H+S+
Sbjct: 13  IDEDIIKRAAVLLRRGELVAIPTETVYGLGANGLDEKACLNIFKTKNRPADNPLILHISN 72

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
             M+                 WPGPLT++     +  I  + TA   T   R P     +
Sbjct: 73  KEMLYNLVEDVSDDAKKLMTLWPGPLTMIF--KKSEIIPEVVTAGGDTVAVRFPVDEIAR 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++IE    P+A PSAN SG+ S TN        +  +IPLIIDGG   IG+EST++++  
Sbjct: 131 RIIEEANIPIAAPSANISGRPSPTNASDCYYD-LNGKIPLIIDGGDCNIGIESTVIDMSE 189

Query: 186 EKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           +    ILRPG   +E ++  +      +  VD+   P+SPG    HYAP++++++    +
Sbjct: 190 DTP-TILRPGFYTLEYIREILPNVALDDALVDDNKIPKSPGQKYKHYAPKARMQVYVGDM 248

Query: 244 NPREALIRFGNVPIKNIENAIISL-------------NLSKTGKLKEAAFNLFNYMKIAD 290
                  +      K I+  ++               +      L + +  LF  ++  D
Sbjct: 249 ASDFIYKKAREYQNKGIKVGVLVFEDNMKRFEGFERISFGDRSDLSQMSHVLFTALRKMD 308

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                 I    + ++ LG +I NR++++AA 
Sbjct: 309 KLKVDLILAEGVMDNNLGKSIMNRMKKSAAG 339


>gi|330684783|gb|EGG96476.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           VCU121]
          Length = 347

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 97/331 (29%), Positives = 156/331 (47%), Gaps = 17/331 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  S  + +  + +  G  +A+PTETVYGL  D+ N  A+ ++YE K RP+ NPLI H+
Sbjct: 14  DIQQSTDVLEIKDTVLNGGLVALPTETVYGLGADATNQEAVSQIYEAKGRPSDNPLIVHI 73

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            D+S +      V+P    L + FWPGP++ +L L S   + P  T  L +   R+P   
Sbjct: 74  HDMSQMNDFIDKVEPRVQQLMETFWPGPISFILPLKSGY-LCPKVTGGLNSIAVRMPSHP 132

Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + +++    P+A PSAN SG+ S T  +H+    +   I  II+G  S+ GLEST+++
Sbjct: 133 IGRGVLQQIDKPIAAPSANISGRPSPTTFEHVY-QDLNGRIDGIINGDQSEEGLESTVLD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL--- 238
              +   RI RPG +    L+  I   +E    +E S P +PGM   HY+P + V +   
Sbjct: 192 CT-QYPFRIARPGSITKMMLENVIPNCIESSNYNEASQPIAPGMKYKHYSPDTPVTILKE 250

Query: 239 --RAIHVNPREALIRFG--NVPIKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSG 293
             + I  N +   + F   +     +      + L      +K+A   L++ +   D   
Sbjct: 251 LNKKILDNKKWEQVAFVVPDSLSHFLPKEATYIKLCDNEADIKQANHLLYSILHEIDQR- 309

Query: 294 ASSI--AFSSIPNHGLGIAINNRLERAAAPR 322
              I              AI NR+ +AA  +
Sbjct: 310 VDIIQAYIYGFDESDQSEAIMNRMLKAAGNK 340


>gi|119356333|ref|YP_910977.1| translation factor SUA5 [Chlorobium phaeobacteroides DSM 266]
 gi|119353682|gb|ABL64553.1| translation factor SUA5 [Chlorobium phaeobacteroides DSM 266]
          Length = 323

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 106/323 (32%), Positives = 166/323 (51%), Gaps = 12/323 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TDS    +A   ++ G  +A PTETVYGL      P A+++L+  K RP  NPL
Sbjct: 1   MQTL-LTDSP--EEAARIINQGNIVAFPTETVYGLGAAICFPEAVKKLFLAKGRPTDNPL 57

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+ +   + K A  + P +  L + F+PGPLTLVL   +T  +    TA L T   R 
Sbjct: 58  IVHIHNAGEMSKVASEISPEATLLIEHFFPGPLTLVLKKKAT--VPDAVTAGLDTVGVRC 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     +  +     P+A PSAN SG+ S T  + +    +  +IP I+ G  S +GLES
Sbjct: 116 PENQIARAFLRHCCAPVAAPSANLSGKPSSTTWEAVF-HDLNGKIPCILRGEPSIVGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVR 237
           TIV+    + + +LR G + +E L+R +          +   P+SPG+   HYAP++ +R
Sbjct: 175 TIVDCSEHEPI-LLREGAVTLEELQRILPAMKARKTGMKDEKPKSPGLKYPHYAPKAAIR 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L      P E+ +    + + N    I  +++ +   ++E A +LF++ +  D  G S I
Sbjct: 234 LCRRGERPPESTLSSAYIGLSNPPEGIRMVSICQ--SIEEYARSLFSFFRACDREGISVI 291

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                   GLG AI++RL RA+ 
Sbjct: 292 YCELPEQKGLGRAIHDRLMRASG 314


>gi|239617335|ref|YP_002940657.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506166|gb|ACR79653.1| Sua5/YciO/YrdC/YwlC family protein [Kosmotoga olearia TBF 19.5.1]
          Length = 342

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 104/330 (31%), Positives = 151/330 (45%), Gaps = 23/330 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A  +L  G  +A PTETVYGL  ++ +  A  +++E K RP  NPLI HVS I
Sbjct: 14  DKGIILRAARYLQKGELVAFPTETVYGLGANALDAKAASKIFEAKGRPQDNPLIVHVSSI 73

Query: 68  SMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M ++    D      L +L WPGP+T++     +  I  + TA L     R P     +
Sbjct: 74  EMAQELVLDDLNDYKWLVELLWPGPVTIIF--RKSRRIPDIVTAGLPNVGIRFPSHPVAQ 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLIE  G P+A PSAN SG+ S T+  H++   +   I  ++  G +  GLESTIV++  
Sbjct: 132 KLIEIAGLPIAAPSANLSGRPSPTDEFHVI-EDMDGRIACMLLAGKTLFGLESTIVDLSR 190

Query: 186 EKKVRILRPGGLEIETLKRAI-SVELEYCVDETST----PQSPGMLKSHYAPRSQVRLRA 240
            K   +LRPG + +E LK     +E+   V           +PGM   HY+P+ ++ L  
Sbjct: 191 GKP-TLLRPGPISVERLKTLFPDLEVPEFVKAEEKYSGPALAPGMKYRHYSPKIELILVE 249

Query: 241 IHVNPREA-----------LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                R             +I             I    L     L E A NLF  ++  
Sbjct: 250 GDPRERYKEIITFAFEKNSIILCSRETEHLYPGEIKRRVLGSRDNLYEVAANLFYALREP 309

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                  I   + P  G+G+AI NRL +AA
Sbjct: 310 -GEEFERIVSEAFPETGVGLAIMNRLRKAA 338


>gi|157364237|ref|YP_001471004.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO]
 gi|157314841|gb|ABV33940.1| Sua5/YciO/YrdC/YwlC family protein [Thermotoga lettingae TMO]
          Length = 338

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 100/326 (30%), Positives = 165/326 (50%), Gaps = 17/326 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   LRKA + +  G  +A PTETVYGL  D  N +A+ ++++IK RPA NPLI H+ D 
Sbjct: 13  NEGILRKAAQTIKEGGVVAFPTETVYGLGADCFNISAVLKIFQIKNRPADNPLIIHIYDK 72

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
             +++        + ++  +FWPGP+T +       ++    T  L+T   R+P     +
Sbjct: 73  KQLEELVEGDIEQNSYVMDVFWPGPVTFIF--RKKANVPKEVTGGLETVAIRMPSHPVAQ 130

Query: 127 L-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + +   G P+A PSAN SG+ S T  +H++ + +   + +IIDGG + +GLESTIV++  
Sbjct: 131 VFLRLSGTPVAAPSANLSGKPSPTRAEHVI-ADLYGSVDVIIDGGETPLGLESTIVDLSR 189

Query: 186 EKKVRILRPGGLEIETLKRAIS---VELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRA 240
           +  V +LRPG   IE +K+ +    +       E     P +PGM   HYAP   + L  
Sbjct: 190 DYPV-LLRPGPATIEEIKKIVPNLYIPDFLLKKENEPVKPLAPGMAYRHYAPDKPLILVI 248

Query: 241 IHVNPREALIRFGNVPIKNIEN------AIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
                 E L +  + PI   E          ++ + K  +    A NLF+ ++  D   A
Sbjct: 249 NEKKLDEVLSKHPDSPIICPEEMSDRFYGRKTIIMGKLREPFTIAQNLFHVLREVDSLNA 308

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
            S+    +   G+  ++ NRL++AA+
Sbjct: 309 ESVIVIGLEPQGILFSVMNRLKKAAS 334


>gi|310829674|ref|YP_003962031.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium limosum KIST612]
 gi|308741408|gb|ADO39068.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium limosum KIST612]
          Length = 345

 Score =  308 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 100/329 (30%), Positives = 161/329 (48%), Gaps = 23/329 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KA E +  G  +  PTETVYGL  ++ + +A+++++E K RPA NPLI H++D   ++
Sbjct: 18  LTKAGELIARGETVVFPTETVYGLGANALDESAVKKIFEAKGRPADNPLIVHIADRDDLE 77

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           K    V   +  L   FWPGPLTL++    ++ +  + TA L T   R P       LI+
Sbjct: 78  KLVTEVPEKAEKLMDAFWPGPLTLIM--HKSSGVPEVVTAGLDTVAVRFPSNLIALGLIK 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           + G P+A PSAN SG+ S T  +H++   +   +  II    + +GLEST+V+   E   
Sbjct: 136 SAGVPIAAPSANISGRPSPTKSEHVIEDMMG-RVSAIIVSEDTDVGLESTVVDTTTE-PP 193

Query: 190 RILRPGGLEIETLKRAIS-VELEYCVDETSTP---QSPGMLKSHYAPRSQVRLRAIHVNP 245
            +LRPGG+ +  L+  I  V++     E   P   +SPGM  +HY+P+  + +       
Sbjct: 194 TVLRPGGVTVAELEAVIGRVQVSPNAIENVIPEKAKSPGMKYTHYSPKGDLVIVKGTDAE 253

Query: 246 REALI----------RFGNVPIKNI---ENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
           +   I          + G +         ++ I ++L      +E + NLF  ++  DD 
Sbjct: 254 KVEKINRHIKKHEEMQIGILATDETMGNYHSGIIISLGSRENPEEMSHNLFARLRTFDDL 313

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321
           G   I    I      +A+ NRL +A   
Sbjct: 314 GIEKIYAEDIEVGNDTLALANRLYKAGGY 342


>gi|167464535|ref|ZP_02329624.1| hypothetical protein Plarl_18596 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383116|ref|ZP_08056943.1| ribosome maturation-like factor [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152778|gb|EFX45404.1| ribosome maturation-like factor [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 352

 Score =  308 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 104/333 (31%), Positives = 155/333 (46%), Gaps = 24/333 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+R+A   L  G  +A PTETVYGL  D+    A+R ++  K RP+ NPLI H++D   
Sbjct: 18  KAVREAAALLREGKTVAFPTETVYGLGADAAQTEAVRAIFTAKGRPSDNPLIVHIADCKQ 77

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++   S V  + + L    WPGPLTL+L +     + PL TA L T   R P       L
Sbjct: 78  LEDLVSGVPEVLVPLMDACWPGPLTLILPVRPDA-VSPLVTAGLDTVGIRFPDHPVALAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+A PSAN SG+ S T   H+L   +   I  IIDGG + +G+EST++  + + 
Sbjct: 137 LREAGIPIAAPSANSSGRPSPTKASHVL-EDLDGCIGGIIDGGAAGVGIESTVLQWK-DG 194

Query: 188 KVRILRPGGLEIETLKRAI-SVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVN 244
            V +LRPGG+ +E L+  +  V L           P++PGM  +HYAP  ++ L      
Sbjct: 195 VVHVLRPGGISLEQLQVLLPGVPLREPASSEHVEAPRAPGMKYTHYAPAGKLLLVQGSPA 254

Query: 245 PREALIRFGNVPIKNIE----------------NAIISLNLSKTGKLKEAAFNLFNYMKI 288
            R      G + +                     A               A  L++ ++ 
Sbjct: 255 SRVHQWMNGQLALAKGRGERTGVLTFEEHRTCFEADYVSVCGSLANPDTIARRLYDGLRS 314

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            D+   + I   + P  G+G A+ NRL +AA  
Sbjct: 315 FDEHDITYILAETCPEEGIGQAVMNRLLKAAGH 347


>gi|294658611|ref|XP_002770816.1| DEHA2F13486p [Debaryomyces hansenii CBS767]
 gi|202953256|emb|CAR66340.1| DEHA2F13486p [Debaryomyces hansenii]
          Length = 402

 Score =  308 bits (790), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 107/350 (30%), Positives = 166/350 (47%), Gaps = 36/350 (10%)

Query: 2   QIMSITDSNALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +I       +LR A   L      +  PTETVYGL   + N  +++ +Y+ K RPA NPL
Sbjct: 50  KITDPETEKSLRIAANELATSTNVVGFPTETVYGLGGSALNDESVKSIYKAKNRPADNPL 109

Query: 61  ICHVSDISMVKKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           I HVS I  +K+        +  +  +L + FWPGPLT++L +   + I  + TAN  T 
Sbjct: 110 IVHVSSIDQLKRKILPKDYKIPEIYDNLIEKFWPGPLTILLPIHEGSPISKIVTANQSTF 169

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI     PLA PSAN S + S T   H+    +  +IP IIDGG   +
Sbjct: 170 AVRIPQHPIARALIALSDLPLAAPSANASTRPSPTLASHVY-HDLQGKIPYIIDGGACDV 228

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV------DETSTPQSPGMLKS 228
           G+EST+V+   +  + +LRPGG+ +E +++      E  V       ++   ++PGM   
Sbjct: 229 GVESTVVDGLVDPPM-LLRPGGVSVEDVRKTGGGSWENVVLAKKTAGKSEAVKTPGMKYK 287

Query: 229 HYAPRSQVRLRAIHVNPREALIRFGNV------------------PIKNIENAI-ISLNL 269
           HY+P ++V L     +   A+ ++ +                     + I   I I  +L
Sbjct: 288 HYSPTAKVVLFINCGDGIAAISKYISENNIPESKTIALLKSRYFTDARAISRQINIEEDL 347

Query: 270 SKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             TG   E + NLF  ++  D+ G   I    I     G+A+ NRL +AA
Sbjct: 348 GATGP--EISRNLFKLLRQVDEQGVDIIFIEGIDETDEGLAVMNRLSKAA 395


>gi|329889534|ref|ZP_08267877.1| SUA5 domain protein [Brevundimonas diminuta ATCC 11568]
 gi|328844835|gb|EGF94399.1| SUA5 domain protein [Brevundimonas diminuta ATCC 11568]
          Length = 312

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 166/307 (54%), Gaps = 13/307 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G  + +PTETVYGLA D+ NP A+ R++E K RP  NPLI HV++    +  A
Sbjct: 15  AAEALKTGRLVILPTETVYGLAADASNPQAVARIFEAKGRPRFNPLIAHVANAVDAEAIA 74

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGH 133
             D  +  LA+ FWPGPLT+V  +     +  L+ A L +   RVP     + +I  +G 
Sbjct: 75  VFDAKARALAEAFWPGPLTIVAPVRDRERVCDLARAGLDSVAVRVPGHPRARAVIGAFGG 134

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+  PSANRSG+ S T     L  +  + +   +DGG   +G+EST+V+V  + +V +LR
Sbjct: 135 PVVAPSANRSGRPSPTTFGDALEET-GQAVGAAVDGGPCAVGVESTVVSVL-DGQVALLR 192

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
           PG +  E ++ A         +     +SPG L  HYAP + VR+ A      E L+ FG
Sbjct: 193 PGSVTREEIEAAAG----PLAEGGQGHRSPGRLALHYAPDAPVRIEADGARDGEILLGFG 248

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
                         +LS +G L+EAA NLF  ++ AD S  S IA S IP  GLG AIN+
Sbjct: 249 ------AGVGDPRWSLSPSGDLREAAANLFRLLREADRSKPSGIAVSPIPAKGLGEAIND 302

Query: 314 RLERAAA 320
           RL RAA 
Sbjct: 303 RLRRAAG 309


>gi|50552650|ref|XP_503735.1| YALI0E09449p [Yarrowia lipolytica]
 gi|49649604|emb|CAG79325.1| YALI0E09449p [Yarrowia lipolytica]
          Length = 373

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 106/346 (30%), Positives = 159/346 (45%), Gaps = 32/346 (9%)

Query: 5   SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           SI+DS    AL+ A   L     P+A PTETVYGL   + +  +++ +Y  K RPA NPL
Sbjct: 25  SISDSETLEALKHASHVLQTTHEPVAFPTETVYGLGASALSTESVKSIYAAKNRPADNPL 84

Query: 61  ICHVSDISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I HVS +  +K+       +  +   L + FWPGPLT++L L S +D+ P  T    T  
Sbjct: 85  IVHVSSLDQLKRKILKGREIPDVYTPLIEKFWPGPLTILLPLDSDSDVSPACTVGQPTVA 144

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI     PLA PSAN S + S T   H+    +   IPLI+DGG   +G
Sbjct: 145 VRMPDHPVARSLIALSDLPLAAPSANASTRPSPTTADHVY-HDLQGRIPLILDGGACHVG 203

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV------DETSTPQSPGMLKSH 229
           +EST+V+   +  + +LRPGG+ +E ++     + +  +            ++PGM   H
Sbjct: 204 VESTVVDGLSDPPM-LLRPGGVSLEQIREHGGEKWKNVLVGRANAKTDEAVRTPGMKYKH 262

Query: 230 YAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISL---------------NLSKTGK 274
           Y+P  +V L     +          V    +E   I L                LS    
Sbjct: 263 YSPTGKVVLFGPVSDKSVEQAVKEYVTSGELEGKKIGLLTSLTLSNDTLPDVHTLSMGTT 322

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
               + NLF  ++  D +    I    I     G+A+ NRL +AA+
Sbjct: 323 PALVSRNLFAGLRDMDIAEVEVILVEGIREEDEGLAVMNRLRKAAS 368


>gi|70607376|ref|YP_256246.1| hypothetical protein Saci_1642 [Sulfolobus acidocaldarius DSM 639]
 gi|68568024|gb|AAY80953.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 352

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 97/324 (29%), Positives = 156/324 (48%), Gaps = 19/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  ++ PTETVYGL  ++ +  A  ++++ K RP  NPLI H++++  + 
Sbjct: 17  IREASEVIKRGGLVSFPTETVYGLGANAYDGNACLKIFQAKNRPPDNPLIVHIAELDQLF 76

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             A  ++   L + ++ WPGPLTL+L    ++ I    +A L T   R+P      +LI 
Sbjct: 77  DVAVDINEKVLEIVQVIWPGPLTLIL--KKSSKIPKEVSAGLDTVAVRMPAHPIALQLIR 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+A PSAN + + S T  + +L+  +   + +IIDGG +  G+ESTIVNV      
Sbjct: 135 ESGVPIAAPSANLATRPSPTRAEDVLND-LNGRVDIIIDGGHTFFGVESTIVNVTSN-PP 192

Query: 190 RILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            +LRPG   +E L+         E    + E     +PGM   HYAP  ++ L       
Sbjct: 193 TLLRPGPFTVEELRSFFPDIQVPEFARGLGEADIALAPGMKYRHYAPSKKIILIENRSLM 252

Query: 246 RE------ALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           R+      A  +   +  K + N       + L     L E A NLF   ++ ++     
Sbjct: 253 RKVVDLLSAKYKVTVLITKELVNEFKDKDMIVLGSDENLYEVARNLFESFRLLENRDTEL 312

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
                 P  G+G+AI NR  +A+ 
Sbjct: 313 GVMVGFPERGVGLAIMNRARKASG 336


>gi|295105441|emb|CBL02985.1| translation factor SUA5 [Faecalibacterium prausnitzii SL3/3]
          Length = 341

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 107/344 (31%), Positives = 169/344 (49%), Gaps = 29/344 (8%)

Query: 1   MQIMS---ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           M+I +     D   + +A + L  G  +A+PTETVYG+A D+RN  A+R ++  K RP  
Sbjct: 1   MEIKTRVLPADEAGVAEAAQLLRQGQLVALPTETVYGIAADARNGAAVRNIFVAKGRPQD 60

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI HV+   M+      V   +  L   F PGPLT+++      ++     A L T  
Sbjct: 61  NPLIVHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVADECCAGLDTVG 118

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + +I+  G   A PSAN SG+ S TN + + +  +   +PLI+DGG   +G
Sbjct: 119 IRMPSHPVARAVIQQSGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDVG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSH 229
           +EST+V+V  +K   + RPG + +E L+RA+  E+E        + E +  +SPGM   H
Sbjct: 178 VESTVVSVVGDKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKH 236

Query: 230 YAPRSQVRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278
           YAP++ V L              H +   + + F     K     +  +   + G   + 
Sbjct: 237 YAPKADVTLLNGTFAQFKAYVDAHKDENPSCLCFTGESAKL---NVPCVEYGREGDGADQ 293

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           A ++F  ++  D+ G   +        GL +A+ NRL RAAA R
Sbjct: 294 AKHIFRSLRALDEQGDGVVYARCPQKDGLSMAVYNRLIRAAAFR 337


>gi|149200145|ref|ZP_01877169.1| sua5 related protein [Lentisphaera araneosa HTCC2155]
 gi|149136786|gb|EDM25215.1| sua5 related protein [Lentisphaera araneosa HTCC2155]
          Length = 322

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 171/331 (51%), Gaps = 17/331 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I   T+ N ++KA E L     +A  TETVYGL  ++ +P A  ++++ KKRP  +PL
Sbjct: 1   MAIFRGTEEN-IKKAAEHLKNDNLVAFATETVYGLGANALSPPACEKIFKAKKRPKYDPL 59

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+++I  +      +  ++L LA+ +WPGPLTLV     T  I  L T+ L T   R+
Sbjct: 60  IVHIAEIYQLSDLVKEIPDVALDLAEAYWPGPLTLVF--KKTDLIPSLITSGLDTVAIRM 117

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+     P+A PSAN  G +S T+ +H+ S  +  E+ +I+DGG    G+ES
Sbjct: 118 PAHPLALGLLSEAQIPVAAPSANPFGYLSPTSAEHVFS-QLENEVDIILDGGECDWGIES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV+    + + +LR GG+  E ++R     +++       P +PG L SHYAP +++ +
Sbjct: 177 TIVDCSSGEAI-LLRQGGISAEDIRRVTG-SVQFGKAVLERPLAPGQLASHYAPNTKLMI 234

Query: 239 RA------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
                   I  + +   ++ G+  I+  E  ++S N       K  A NLF+ +   D  
Sbjct: 235 LKSGEVPNIADSAKVGFLQMGSTSIEATEIEVLSEN---EQDFKSIAHNLFSALHRLDSK 291

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
           G   I    +  + L  AI +RL +AAA R+
Sbjct: 292 GLDVIYVYELEGNDLASAIMDRLLKAAAKRS 322


>gi|255034046|ref|YP_003084667.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
           18053]
 gi|254946802|gb|ACT91502.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
           18053]
          Length = 349

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 126/324 (38%), Positives = 177/324 (54%), Gaps = 12/324 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+++T S+ L  A EFL  G  +AIPTETVYGLA ++ N  A+  ++E+K RPA +PLI 
Sbjct: 32  ILAVTGSD-LSVAKEFLIKGELVAIPTETVYGLAGNALNEKAVLSIFEVKNRPAFDPLII 90

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H   +  V  + S  P     LA+  WPGPLTL+L       +  L T+ L T   R+P 
Sbjct: 91  HTDSLKKVAIYVSDVPEKARILAEKLWPGPLTLLLP--KKDIVPDLVTSGLDTVAVRIPD 148

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
              T++L+     PLA PSAN  G IS T   H+    +   IP I+DGG  ++G+ESTI
Sbjct: 149 HALTRELLAQLSFPLAAPSANPFGYISPTKPAHV-EQQLGDRIPYILDGGECEVGIESTI 207

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR- 239
           V  + ++ + + R GGL+I  ++  I   +      TS P++PGMLKSHYAPR  + L  
Sbjct: 208 VGFENDETI-VYRLGGLDINEIESLIG-PVALMPHSTSDPKAPGMLKSHYAPRKPLHLYR 265

Query: 240 --AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
             AI            +  +  ++     L LS    LKEAA NLF Y++  D    S I
Sbjct: 266 RDAITPGDAGTGYLLFDRYLDGVDRRYQRL-LSPGHDLKEAAHNLFAYLRELDGLPVSEI 324

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
               +P  GLG+AIN+RL+RA+ P
Sbjct: 325 KAELVPASGLGLAINDRLQRASVP 348


>gi|288574653|ref|ZP_06393010.1| Sua5/YciO/YrdC/YwlC family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570394|gb|EFC91951.1| Sua5/YciO/YrdC/YwlC family protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 322

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 108/320 (33%), Positives = 160/320 (50%), Gaps = 15/320 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   L +G  +  PTETVYGL  D  +  A+  ++E K RP+ NPLI HV D 
Sbjct: 13  DREVIDRAVSILKSGGLVGFPTETVYGLGADGLDGKAVSGIFEAKGRPSDNPLILHVGDP 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             V+K A VD  +  + K  WPGPLTLVL  L    + P  TA L T   R+P       
Sbjct: 73  ESVRKIAKVDDRADMIMKNLWPGPLTLVLPALPI--VPPEVTAGLDTVGVRMPSHPVALA 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++    P+A PSAN SG+ S T+   +    +   + LIIDGG +++GLEST+++V  E
Sbjct: 131 LLQACPFPVAAPSANTSGRPSPTDAVTVARD-LDDRVDLIIDGGATEVGLESTVLDVTGE 189

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL----RAIH 242
             V +LRPGGL +E L   +  E+   V E    +SPG    HYAP   + L     + H
Sbjct: 190 VPV-LLRPGGLSVEVLADLLG-EIALPVGELELKRSPGTRYRHYAPSVPLILWIPEESGH 247

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +  E+    G V      +  I  +      ++     LF+ ++  +     +I     
Sbjct: 248 PDFGESCRYIGMVEPVFPVDKSIIFD-----SVESYGRGLFSALRELEREWDGTIVAQWP 302

Query: 303 PNHGLGIAINNRLERAAAPR 322
            + G+G+A+ +RL RA+  R
Sbjct: 303 DSDGIGLALRDRLRRASGGR 322


>gi|21674532|ref|NP_662597.1| SUA5/YciO/YrdC family protein [Chlorobium tepidum TLS]
 gi|21647726|gb|AAM72939.1| SUA5/yciO/yrdC family protein [Chlorobium tepidum TLS]
          Length = 323

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 101/323 (31%), Positives = 157/323 (48%), Gaps = 12/323 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TD     +A  +L+    +A PTETVYGL  D+ NP A+ ++++ K RP+ NPL
Sbjct: 1   MQTL-VTDRP--EEAASWLNRSETVAFPTETVYGLGADAFNPDAVAKIFKAKGRPSDNPL 57

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    + +  A +   +  L + F+PGPLTLVL   +   +  + +A L T   R 
Sbjct: 58  IVHVATPEQIGEVAAEIGETAKILVERFFPGPLTLVLKKRAA--VPEIVSAGLPTIGVRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      + +    HP+A PSAN SG+ S T+ K +    +  +I  ++ G  S IGLES
Sbjct: 116 PSHPIASEFLRHCKHPVAAPSANVSGRPSPTDWKTVY-HDLGGKIACLLRGEPSTIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+       R+LR G + IE L+  +  +E+         P+SPG    HY+P +++ 
Sbjct: 175 TIVDCSVN-PPRLLRTGAVSIELLRELVPDIEIATACKPGEAPKSPGQKYRHYSPEAEII 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L  +   P           I        +    +   + E A  LF + +  D  G  +I
Sbjct: 234 L--VESPPSNLQTDLHAAWIGLAAPPAGAAKSLQCRDMDEYARVLFGFFRTCDAEGIRTI 291

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P  G+G AI +RL +AA 
Sbjct: 292 YCELPPEKGIGRAIRDRLVKAAG 314


>gi|312884326|ref|ZP_07744035.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368099|gb|EFP95642.1| putative translation factor [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 320

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/319 (30%), Positives = 166/319 (52%), Gaps = 8/319 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q +S  +S  + +A + L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI
Sbjct: 4   QHLSAQNSLDIEQAQKILTSGELVAIPTETVYGLAADASNPDAVKKIFAAKGRPADHPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+  +  +   A  +   +  +AK FWPGP+TL+L+     D + + T  L T   R+P
Sbjct: 64  VHIGRLEQLSDWARDIPQQAYTIAKAFWPGPVTLLLN--KADDANTVVTGGLGTIGIRMP 121

Query: 121 CGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  L+E  G  +A PSAN   ++S T+  H+++S +  +I  ++DGG    GLEST
Sbjct: 122 AHPVFSTLLEASGMAVAAPSANPYKKLSPTSAVHVINS-LEGKIAAVLDGGDCHHGLEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+++  +   R+LR G +  + L   +  E+      ++    PG + SHY P ++VRL 
Sbjct: 181 IIDLT-QTPFRVLRSGPISAKQLADVLGEEVLTPTSHSAAV--PGNVTSHYQPNTRVRLV 237

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           +      +  ++   +    IE     +++     + + A +L+  +  AD  G   I  
Sbjct: 238 SADELSSKPELKVACLHYSAIETNDNIVSIKMPKDVAQYAHDLYRTLNDADKLGCDEIWV 297

Query: 300 SSIPNHGLGIAINNRLERA 318
              P     +A+++RL RA
Sbjct: 298 ERPPLTEDWVAVHDRLNRA 316


>gi|168333894|ref|ZP_02692132.1| hypothetical protein Epulo_03232 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 334

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 105/336 (31%), Positives = 167/336 (49%), Gaps = 25/336 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  + ++ ++ L  A   L  G  +  PTETVYGL  ++ +  A+  +++ K RPA NPL
Sbjct: 1   MDTIILSKTDNLELAINILKNGGLVVSPTETVYGLCANALDENAVENIFKAKGRPADNPL 60

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++ ++M+ +  A +   +  L   FWPGPLTL+    S   I   + ANL+T   R 
Sbjct: 61  IVHIASLAMLDQLVAEISANAQKLIDAFWPGPLTLIF--KSQNIIPNKTRANLQTVAIRF 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +LI+    PLA PSAN SG+ S TN+  ++   +  ++  IIDGG  KIGLES
Sbjct: 119 PENKIIIELIKKSKLPLAAPSANTSGKPSPTNIDRVI-EDLFGKVDCIIDGGNCKIGLES 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           T+V+V  +   RILRPG +    L++ +          ++ P +PGM   HYAP + V +
Sbjct: 178 TVVDVSGDN-ARILRPGFITAAMLEKIVP---SVSAPASAFPIAPGMKYKHYAPSANVAI 233

Query: 239 RAIH---------------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
              +                  + A +   +  I   E+ I  ++L     L+  A NLF
Sbjct: 234 VDGNDLQEIAKKICCLIKKDRHKRAGVLIVDEMISFFED-IPVVSLGSITNLESIASNLF 292

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             ++  DD     +    + +  LG++I NRL +A+
Sbjct: 293 EKLRQLDDLKLEQVYTIYLHDKNLGLSIMNRLLKAS 328


>gi|323491653|ref|ZP_08096832.1| putative translation factor [Vibrio brasiliensis LMG 20546]
 gi|323314229|gb|EGA67314.1| putative translation factor [Vibrio brasiliensis LMG 20546]
          Length = 320

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 98/319 (30%), Positives = 161/319 (50%), Gaps = 8/319 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q +S +D   +  A + L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI
Sbjct: 4   QHLSASDKQDIELAKQILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+ ++  +   A  +   +  +A  FWPGP+TL+L+        P+ T  L T   R+P
Sbjct: 64  VHIGNVEQLSDWARDIPQQAYTIADAFWPGPVTLLLNKAPQAT--PVVTGGLDTIGIRMP 121

Query: 121 CGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  L+++ G  +A PSAN   ++S T+ +H+L+S +  +I  ++DGG    GLEST
Sbjct: 122 AHDVFSTLLKSSGMAVAAPSANPYKKLSPTSAEHVLNS-LGGKISAVLDGGDCAHGLEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+++  EK  RILR G +    L + +  E+     +  T   PG + SHY P ++VRL 
Sbjct: 181 IIDLT-EKPFRILRTGPVTAAQLSQVLGEEV--LSPKAHTVAVPGNVTSHYQPNTKVRLV 237

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
            +             +    +E      +      + + + +L+  +  AD  G   I  
Sbjct: 238 TLEEIENATGDNIACLHYSPVELKTGFKSKQMPTDVAQYSHDLYRALDDADKWGCDEIWV 297

Query: 300 SSIPNHGLGIAINNRLERA 318
              P      A+++RL RA
Sbjct: 298 ERPPVSEAWFAVHDRLNRA 316


>gi|146339104|ref|YP_001204152.1| hypothetical protein BRADO2058 [Bradyrhizobium sp. ORS278]
 gi|146191910|emb|CAL75915.1| conserved hypothetical protein containing Sua5/YciO/YrdC/YwlC
           domains [Bradyrhizobium sp. ORS278]
          Length = 333

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 135/307 (43%), Positives = 173/307 (56%), Gaps = 8/307 (2%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A PTETVYGL  D+ N  AI  LY+ K RPA NPLI HV+D +  ++    D  +
Sbjct: 30  RGGLVAFPTETVYGLGADAANAAAIAHLYQAKGRPAFNPLIAHVADAAAARRIGRFDATA 89

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPS 139
             LA  FWPGPLTLV+       +  L+TA L T   RVP     + L+  +G  +  PS
Sbjct: 90  ERLAAAFWPGPLTLVVPQADQCPVADLATAGLDTVAIRVPAHPTARALLAAFGGAVVAPS 149

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG +S T   H+ ++ +   I LI+DGG   +G+ESTI+    E  +  LRPGG+  
Sbjct: 150 ANISGHVSPTTAAHV-AADLSGRIDLILDGGAVDVGVESTIIGCFAEPTL--LRPGGVPS 206

Query: 200 ETLKRAISVELEYC----VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           E ++  +   L             P +PGML SHYAP + VRL A +V P EAL+ FG V
Sbjct: 207 EAIEAVLGQPLARLAVAEAHAAEQPLAPGMLASHYAPHAAVRLDATNVAPDEALLAFGPV 266

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
            +     A   LNLS  G   EAA +LF Y++  D SGA SIA   IPN GLG AIN+RL
Sbjct: 267 TLPGAAQAAAILNLSPVGDPAEAATHLFGYLRSLDASGARSIAVMPIPNDGLGEAINDRL 326

Query: 316 ERAAAPR 322
            RAAAPR
Sbjct: 327 RRAAAPR 333


>gi|251771701|gb|EES52276.1| Sua5/YciO/YrdC/YwlC family protein [Leptospirillum
           ferrodiazotrophum]
          Length = 357

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 101/328 (30%), Positives = 161/328 (49%), Gaps = 19/328 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + L +A   L+AGL +  PTETVYGL  D+ NP A+RR+YEIK RPA +PLI H++ + 
Sbjct: 29  PDDLERAALRLEAGLTVVFPTETVYGLGADASNPEAVRRIYEIKGRPADHPLIVHIAGLG 88

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++  A  + P +  L + FWPGPLTL+L      ++    T    T   RVP       
Sbjct: 89  DLEAWADPIPPEAWRLGERFWPGPLTLILPCRG--EVPKAVTGGRDTIAVRVPAHPVAAA 146

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++ +G  +A PSANR G++S T   H+      +E  ++++GG  +IG+ESTIV++  E
Sbjct: 147 LLKAFGRGIAAPSANRFGRLSPTTSGHV-REEFGEEAGMVLEGGPCRIGVESTIVSLVGE 205

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-------- 238
             + ILRPG L    +   +  ++    +    P +PG    HYAP++ + +        
Sbjct: 206 TPL-ILRPGALTAGQIGEVLGRKIGGASEGQVVPAAPGSHSVHYAPKTPLEILSGTHLPG 264

Query: 239 ---RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
              R I    +  ++           + + ++ +       E A  L+  +   D SG  
Sbjct: 265 RVFRTIRAGEKAGILALTQGAGSFGSDKVATILMPSRAD--EYARELYAALHRLDRSGCD 322

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRN 323
            +     P     IA+ +RL RA A R+
Sbjct: 323 RLFAERPPATEEWIAVRDRLGRACAGRS 350


>gi|199597585|ref|ZP_03211014.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001]
 gi|199591608|gb|EDY99685.1| Putative translation factor (SUA5) [Lactobacillus rhamnosus HN001]
          Length = 340

 Score =  306 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 104/325 (32%), Positives = 162/325 (49%), Gaps = 15/325 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D +
Sbjct: 7   ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAA 66

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           MV ++A++ P +  L   FWPGPLT++L++L    +    T  L+TA FR P    T+KL
Sbjct: 67  MVSQYATITPDAAKLMDTFWPGPLTIILNVLPGR-LSMKVTGGLQTAAFRNPDDALTRKL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I T G P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ESTI+++    
Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTP 184

Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
              ILRPG +    L+  +       + V +   P++PGM   HYAP +QV +       
Sbjct: 185 PA-ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQF 243

Query: 246 REALIR-------FGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIAD-DSGASS 296
            +A+         FG +    I      +     G  +  A   LF  ++  D     + 
Sbjct: 244 DDAVAWAKKTGQTFGLLATDPILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTL 303

Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321
           +   +     L  A  NRL ++A  
Sbjct: 304 VLAQAFSYSELSAAYMNRLLKSAGN 328


>gi|94497450|ref|ZP_01304020.1| putative translation factor [Sphingomonas sp. SKA58]
 gi|94423081|gb|EAT08112.1| putative translation factor [Sphingomonas sp. SKA58]
          Length = 318

 Score =  306 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/313 (41%), Positives = 185/313 (59%), Gaps = 12/313 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + +LR+A   + AG P+A+PTETVYGLA D+ +  A+  +Y  K RP+ NPLI HV+ + 
Sbjct: 17  AESLREAALLIRAGEPVAVPTETVYGLAADATDNNAVAAIYSAKGRPSFNPLIVHVAHMD 76

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
           M +  A +   +  LA  FWPGPLT+VL + + + +  L TA L T   R+P     + L
Sbjct: 77  MARSLAHLSTTAETLAAQFWPGPLTMVLPVRADSGLSHLVTAGLPTVALRLPAHPAMRAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSANRSG IS T  +H+L +S+  ++ +++D G +  GLESTI       
Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVL-ASLNGKVRMVLDEGPTSEGLESTI-AAPEAD 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           ++R+LRPG +    L +A  + +   +   +  ++PG L+SHYAP   VRL A+     E
Sbjct: 195 RIRLLRPGPVTAAMLGKATGLPVVVGL-ADAAIEAPGQLESHYAPAKAVRLEALRAEADE 253

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            LI FG +P          +NLS    L+EA  NLF  + IAD S A+ IA + IP  G+
Sbjct: 254 YLIGFGLMPCH--------INLSPEANLREAGANLFAALHIADASTAARIAVAPIPPEGI 305

Query: 308 GIAINNRLERAAA 320
           G+AIN+RL+RAAA
Sbjct: 306 GVAINDRLKRAAA 318


>gi|312142774|ref|YP_003994220.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium sp.
           'sapolanicus']
 gi|311903425|gb|ADQ13866.1| Sua5/YciO/YrdC/YwlC family protein [Halanaerobium sp.
           'sapolanicus']
          Length = 350

 Score =  306 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 115/340 (33%), Positives = 173/340 (50%), Gaps = 20/340 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I +  D  A+ KA E L  G  +AIPTETVYGLA D+ NP A++R++E K RP  NPLI 
Sbjct: 8   IKANNDDQAVEKAAELLHKGELVAIPTETVYGLAADALNPEAVKRIFEAKGRPQDNPLII 67

Query: 63  HVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           H+     ++K     V   +  L   +WPGPLTL+     ++ +   ++A L T   R+P
Sbjct: 68  HIGAQKDLEKLIAEKVSKRAQKLIDKYWPGPLTLIF--KKSSLVPAETSAGLDTVAVRMP 125

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T KL++  G  LA PSAN SG  S T  +H+  + +  +IPLI+DGG  ++G+EST
Sbjct: 126 SHPVTIKLLQKSGLVLAAPSANTSGYPSPTRAEHVY-ADLKTKIPLILDGGSCEVGVEST 184

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
           ++++  +K+  +LRPGG+  E L   +  EL+        T    SPGM   HYAP+  +
Sbjct: 185 VIDL-SQKEAVVLRPGGISREELAEFLGEELKLNNNLEKSTQGVISPGMKYRHYAPQKNL 243

Query: 237 R---------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMK 287
                     L       + ALI      +   E+ +  +      K  E A  LF  ++
Sbjct: 244 YIFDPVKKDLLFKKAEQKKIALIISRQTELGQKEDQLKVIRAFDREKPAELARKLFALLR 303

Query: 288 IAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
             D D     I    +   GLG  + NR+ +AAA ++++Q
Sbjct: 304 ELDSDPEVEEIYIEELKEEGLGETLMNRIYKAAAAKDEAQ 343


>gi|315925283|ref|ZP_07921495.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315621404|gb|EFV01373.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 346

 Score =  306 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/333 (29%), Positives = 161/333 (48%), Gaps = 24/333 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +  + +  G  +  PTETVYGL  ++ +P AI +++E K RPA NPLI H++D  
Sbjct: 15  AQSIARCGQIIRDGGTVVFPTETVYGLGANAFDPAAIAKIFEAKGRPADNPLIVHIADWD 74

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
            + +  A V   +  LA+ +WPGP+T++L   +   +    TA L T   R P     ++
Sbjct: 75  QISELVAEVPEKARQLAEAYWPGPMTMILRRSAA--VPDAVTAGLGTVGIRFPSNPYARQ 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSAN SG+ S T  +H+L   + K +  I+    S +GLEST++++   
Sbjct: 133 LIVASGVPIAAPSANISGRPSPTRGRHVLEDMLEK-VDAILVADESDVGLESTVIDMTS- 190

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCVDETSTP---QSPGMLKSHYAPRSQVRLRAIH 242
               +LRPGG+ +  ++R I  V +         P   +SPGM   HYAP  ++ +    
Sbjct: 191 IPPTVLRPGGITVADIERVIGPVAVSPNTTRPVIPEEVRSPGMKYRHYAPHGRMVIARGS 250

Query: 243 VNPREALIRFGNVPIKNIENAII--------------SLNLSKTGKLKEAAFNLFNYMKI 288
              + A I      +K  +   +               L+L           NLF+ ++ 
Sbjct: 251 DGEKAAKINAAIDGLKAQDKPAVLATDETLGHYRRGMILSLGSQTDPAAMGHNLFDCLRA 310

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            DD GA+ I    +P     +A+ NRL +AA  
Sbjct: 311 FDDLGATHIFAEDVPVGNDTLALINRLYKAAGY 343


>gi|258508168|ref|YP_003170919.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG]
 gi|257148095|emb|CAR87068.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus GG]
 gi|259649485|dbj|BAI41647.1| translational factor [Lactobacillus rhamnosus GG]
          Length = 340

 Score =  306 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 104/325 (32%), Positives = 162/325 (49%), Gaps = 15/325 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A   L  G  +A PTETVYGL  D+ N TA+ ++Y  K RP+ NPLI  V+D +
Sbjct: 7   ESDIPEAAAALKRGELVAFPTETVYGLGADATNVTAVSQVYAAKGRPSDNPLIVTVADAA 66

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           MV ++A++ P +  L   FWPGPLT++L++L    +    T  L+TA FR P    T+KL
Sbjct: 67  MVSQYATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I T G P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ESTI+++    
Sbjct: 126 IATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTP 184

Query: 188 KVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
              ILRPG +    L+  +       + V +   P++PGM   HYAP +QV +       
Sbjct: 185 PA-ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQF 243

Query: 246 REALIR-------FGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIAD-DSGASS 296
            +A+         FG +    I      +     G  +  A   LF  ++  D     + 
Sbjct: 244 DDAVAWAKKTGQTFGLLATDPILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTL 303

Query: 297 IAFSSIPNHGLGIAINNRLERAAAP 321
           +   +     L  A  NRL ++A  
Sbjct: 304 VLAQAFSYSELSAAYMNRLLKSAGN 328


>gi|255731390|ref|XP_002550619.1| protein SUA5 [Candida tropicalis MYA-3404]
 gi|240131628|gb|EER31187.1| protein SUA5 [Candida tropicalis MYA-3404]
          Length = 385

 Score =  306 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 110/347 (31%), Positives = 169/347 (48%), Gaps = 36/347 (10%)

Query: 5   SITDS---NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD    N L+ A + L      I  PTETVYGLA  S    ++R +Y  K RPA NPL
Sbjct: 37  TITDEETLNNLQTAAKELTTTNNAIGFPTETVYGLAGSSLKDESVRSIYRAKNRPADNPL 96

Query: 61  ICHVSDISMVKK----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I H+S I  +K+       +  +   L + FWPGPLT++L +     I  L TAN  T  
Sbjct: 97  ITHISSIDQLKRKLINQEEIPSIYNKLIEKFWPGPLTILLPISKNCPISKLVTANQDTFA 156

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI     P+A PSAN S + S T  +H+ +  +  +IP+I+DGG   +G
Sbjct: 157 VRMPNHPVARALISISDTPIAAPSANASTRPSPTLAEHVYND-LNGKIPIILDGGACDVG 215

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE------YCVDETSTPQSPGMLKSH 229
           +EST+++   +  + +LRPGG+ +E +K+    E E          +    ++PGM   H
Sbjct: 216 VESTVIDGLVDPPM-LLRPGGVSLEEIKKYGGKEWENVIIAKKTAGKLEPVKTPGMKYRH 274

Query: 230 YAPRSQVRLRAIHVNPREALIRF----------------GNVPIKNIENAIISLNLSKTG 273
           Y+P ++V L     + +EA++ +                 +    ++E   I   L K G
Sbjct: 275 YSPTAKVILFVNCGDGKEAILNYLKQNNIDCNNTKIALLKSCNFVDVEGVAIIKELGKNG 334

Query: 274 KLKEAAFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAA 319
              E + NLF Y++  D+      I    I     G+A+ NRL +AA
Sbjct: 335 H--EISHNLFKYLREVDEEDKVDLILVEGIDETNEGLAVMNRLSKAA 379


>gi|160945366|ref|ZP_02092592.1| hypothetical protein FAEPRAM212_02888 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443097|gb|EDP20102.1| hypothetical protein FAEPRAM212_02888 [Faecalibacterium prausnitzii
           M21/2]
          Length = 344

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/344 (31%), Positives = 169/344 (49%), Gaps = 29/344 (8%)

Query: 1   MQIMS---ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           M+I +     D   + +A + L  G  +A+PTETVYG+A D+RN  A+R ++  K RP  
Sbjct: 4   MKIKTRVLPADEAGVAEAAQLLRQGQLVALPTETVYGIAADARNGAAVRDIFVAKGRPQD 63

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI HV+   M+      V   +  L   F PGPLT+++      ++     A L T  
Sbjct: 64  NPLIVHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVADECCAGLDTVG 121

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + +I+  G   A PSAN SG+ S TN + + +  +   +PLI+DGG   +G
Sbjct: 122 IRMPSHPVARAVIQQSGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDVG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSH 229
           +EST+V+V  +K   + RPG + +E L+RA+  E+E        + E +  +SPGM   H
Sbjct: 181 VESTVVSVVGDKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKH 239

Query: 230 YAPRSQVRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278
           YAP++ V L              H +   + + F     K     +  +   + G   + 
Sbjct: 240 YAPKADVTLLNGTFAQFKAYVDAHKDENPSCLCFTGESAKLD---VPCVEYGREGDGADQ 296

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           A ++F  ++  D+ G   +        GL +A+ NRL RAAA R
Sbjct: 297 AKHIFRSLRALDEQGDGVVYARCPQKDGLSMAVYNRLIRAAAFR 340


>gi|153812520|ref|ZP_01965188.1| hypothetical protein RUMOBE_02919 [Ruminococcus obeum ATCC 29174]
 gi|149831445|gb|EDM86533.1| hypothetical protein RUMOBE_02919 [Ruminococcus obeum ATCC 29174]
          Length = 354

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 104/336 (30%), Positives = 169/336 (50%), Gaps = 25/336 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D +A++KA + L AG  +A PTETVYGL  ++ +P A  ++Y  K RP+ NPLI H++++
Sbjct: 14  DMDAIKKAGDILKAGGLVAFPTETVYGLGGNALDPQASMKIYAAKGRPSDNPLIVHIAEL 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             ++K  +  P     LA+ +WPGPLT++L       +   +T  L +   R P     +
Sbjct: 74  EQLEKITTEIPEGAKILAEKYWPGPLTMILPKADI--VPRETTGGLDSVAVRFPSDRIAQ 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI+  G  +A PSAN SG+ S T  +H+    +   I +IIDGG   IGLESTIV+   
Sbjct: 132 ELIKAGGGFVAAPSANTSGRPSPTMAEHV-EEDLGDAIDMIIDGGQVGIGLESTIVDFT- 189

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYC---VDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           EK   +LRPG + +E L+  +  V ++      D +  P++PGM   HYAP++ + +   
Sbjct: 190 EKVPVVLRPGYISLEMLQETLGDVRMDKGLLITDSSVHPKAPGMKYRHYAPKADLSIIEG 249

Query: 242 HVNPREALI------------RFGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFNYM 286
           +     A I            + G +     +        L++    + +  A +L+  +
Sbjct: 250 NEEDVVACINHLTDEAVAKGLKVGVIATDETKARYAHADVLSIGSREEEETIAHHLYEVL 309

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +  DD     I   +     +G AI NRL +AA  +
Sbjct: 310 RDFDDDRVDVIYSEAFYTPKMGQAIMNRLLKAAGHK 345


>gi|241957109|ref|XP_002421274.1| protein required for respiratory growth, putative [Candida
           dubliniensis CD36]
 gi|223644618|emb|CAX40606.1| protein required for respiratory growth, putative [Candida
           dubliniensis CD36]
          Length = 382

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 107/346 (30%), Positives = 165/346 (47%), Gaps = 32/346 (9%)

Query: 2   QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           QI        L+ A + L      I  PTETVYGLA  + +  ++R +Y+ K RPA NPL
Sbjct: 32  QISDNETLTNLQIAAKELTTTHNAIGFPTETVYGLAGSALSDESVRSIYKAKNRPADNPL 91

Query: 61  ICHVSDISMVKK---HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I H+S I  +K+   +  +  + L+L   FWPGPLT++L +   + I  L TAN  T   
Sbjct: 92  IVHISSIEQLKRKLINYEIPQIYLNLISHFWPGPLTILLPITKDSPISKLVTANQNTFAV 151

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + LI     P+A PSAN S + S T  +H+    +  +IPLI+DGG   +G+
Sbjct: 152 RMPNHPVARALIAMSDTPIAAPSANASTRPSPTLAEHVY-HDLNGKIPLILDGGACDVGV 210

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP------QSPGMLKSHY 230
           EST+++   +  + +LRPGG+ +E +KR      E+ +    T       ++PGM   HY
Sbjct: 211 ESTVIDGLVDPPM-LLRPGGVSLEDIKRVGGKPWEHIIVAKKTAGKLEPVKTPGMKYRHY 269

Query: 231 APRSQVRLRAIHVNPREALIRF----------------GNVPIKNIENAIISLNLSKTGK 274
           +P ++V L     +   A+  +                 +          +   L  TG 
Sbjct: 270 SPTAKVVLFVNCGDGINAIESYLTNNKLDASATKIALLKSKHFSEDHPDFVIKRLGTTGN 329

Query: 275 LKEAAFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAA 319
             E + NLF Y++  D+      I    I     G+A+ NRL +AA
Sbjct: 330 --EISHNLFKYLREVDEEDKVELIFVEGIDETNEGLAVMNRLSKAA 373


>gi|294101619|ref|YP_003553477.1| Sua5/YciO/YrdC/YwlC family protein [Aminobacterium colombiense DSM
           12261]
 gi|293616599|gb|ADE56753.1| Sua5/YciO/YrdC/YwlC family protein [Aminobacterium colombiense DSM
           12261]
          Length = 326

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 107/316 (33%), Positives = 162/316 (51%), Gaps = 11/316 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + + +A   + +G  +A PTETVYGL  +  +  A+R+++  K RP  NPLI H +  
Sbjct: 14  EPHIIAEAAYAIRSGKLVAFPTETVYGLGANGLDDGAVRKIFAAKGRPGDNPLILHFASS 73

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             V++ A V+  +  L   FWPGPLTLVL   +   +    TA L T   R+P       
Sbjct: 74  EDVEQVAYVNERAKLLMDSFWPGPLTLVLP--AKPVVPNSVTAGLGTVAVRMPSHPVAMA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSANRSG+ S T    +L + I  ++ +I+DGG + +GLEST+++V   
Sbjct: 132 LIKVAGVPIAAPSANRSGRPSPTEAASVL-ADIGDDVDIILDGGATDVGLESTVIDVTG- 189

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR---AIHV 243
             V +LR GG+ +E L+  I  E++   DE    +SPG    HYAP   + L     +  
Sbjct: 190 PSVVLLRAGGMPVERLEEVIE-EVKLVPDEAKKKRSPGTRYRHYAPLIPLLLWKNGVLRH 248

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
           +P     R G + IK     +    L KT   +  A  LF   +  +  G   I      
Sbjct: 249 SPLVMGKRIGYIGIKEPPFPVEEKILFKT--PENYAQGLFLAFRTFEKKGIEVIVAEWPN 306

Query: 304 NHGLGIAINNRLERAA 319
           + G+G+A+ +RL RAA
Sbjct: 307 SKGIGLALRDRLSRAA 322


>gi|67468340|ref|XP_650214.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56466800|gb|EAL44828.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 357

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 157/329 (47%), Gaps = 23/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  +  A + +  G  +  PTETVYGL  D   P AI +++++K RP  NPLICH+SDI
Sbjct: 28  DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M+ K  A V   +  L K FWPG LT++        +    TA L T   R+P      
Sbjct: 88  EMLNKLAAHVSEDAHKLIKRFWPGALTIIFPR--NEAVPNEVTAGLNTVGVRMPSHPIAY 145

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I+  G P+A PSAN S + S T  +H +   +   I +IIDGG   IG+EST++ +  
Sbjct: 146 EFIKQCGTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGSCDIGVESTVL-MLG 203

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQV----- 236
                ILRPGG+ +E L+  I     Y +       + P +PGM   HYAP         
Sbjct: 204 NDHPTILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAPSVDTIVITG 263

Query: 237 -----RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-LKEAAFNLFNYMKIAD 290
                +L  +     ++  + G V   ++E+   +L +  TG   K  A  LF  M+  D
Sbjct: 264 DKRSEKLIELCHEYMKSGKKVGVVCW-SLESLDCTLFMKVTGDKYKGMAHALFTDMRDLD 322

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319
                 I    +     G+A+ NR ++AA
Sbjct: 323 -GKVDIILIEGVQEIKEGLAVMNRAKKAA 350


>gi|294793889|ref|ZP_06759026.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 3_1_44]
 gi|294455459|gb|EFG23831.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 3_1_44]
          Length = 347

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 99/340 (29%), Positives = 164/340 (48%), Gaps = 25/340 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++      +      L  G  ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI
Sbjct: 8   KIITNPSEQDIDTLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 67

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV +   +K     +   +  L   FWPGPLT+ L    +  +   +T  L     R P
Sbjct: 68  LHVPNSESIKPLVTEISATAQALMDAFWPGPLTITLP--KSDLVPDRATGGLPRVALRCP 125

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L+E  G P+A PSAN SG+ S T  + +    +   I  I+D G   IG+EST
Sbjct: 126 DHKVCRALLERAGVPVAAPSANISGRPSPTTAQDVY-HDMKGRISYILDAGPCTIGVEST 184

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
           +V V  + KV ILRPGG+    L+  +S  +EY    V+ T+ P++PGM  +HYAP + +
Sbjct: 185 VVEVH-DDKVIILRPGGITKAQLEGVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAPM 242

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKT------------GKLKEAAFN 281
            +   +     ++ +  +  I+     ++S    NL K             G       +
Sbjct: 243 TVVVGNPEDIASMFKALSEGIEGPIGCLVSHETYNLIKEDGRFMCHCFGHHGDALALGHD 302

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  +   +++  + I    + + G G+AI NR+E+A++ 
Sbjct: 303 FYKSLLHFNENHVTLILAEGVDDDGFGVAIMNRMEKASSH 342


>gi|68471205|ref|XP_720379.1| hypothetical protein CaO19.7088 [Candida albicans SC5314]
 gi|77022446|ref|XP_888667.1| hypothetical protein CaO19_7088 [Candida albicans SC5314]
 gi|46442244|gb|EAL01535.1| hypothetical protein CaO19.7088 [Candida albicans SC5314]
 gi|76573480|dbj|BAE44564.1| hypothetical protein [Candida albicans]
          Length = 382

 Score =  305 bits (783), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 158/322 (49%), Gaps = 31/322 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81
           I  PTETVYGLA  + +  +++ +Y+ K RPA NPLI H+S I  +K+   +  +  + L
Sbjct: 56  IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L   FWPGPLT++L +   + I  L TAN  T   R+P     + LI     P+A PSA
Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N S + S T  +H+    +  +IPLI+DGG   +G+EST+++   +  + +LRPGG+ +E
Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACNVGVESTVIDGLVDPPM-LLRPGGVSLE 233

Query: 201 TLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAIHVNPR 246
            +KR         V  +    +    ++PGM   HY+P ++V L         AI     
Sbjct: 234 DIKRVGGKLWENIVVAKKTAGKLEPVKTPGMKYRHYSPTAKVVLFVNCGDGINAIENYLT 293

Query: 247 EALIRFGNVPIKNIENA--------IISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSI 297
              +      I  +++          I   L  TG   E + NLF Y++  D+      I
Sbjct: 294 NNKVDASTTKIALLKSKHFGEDHPHFIIKRLGTTGN--EISHNLFKYLREVDEEDKVELI 351

Query: 298 AFSSIPNHGLGIAINNRLERAA 319
               I     G+A+ NRL +AA
Sbjct: 352 FVEGIDETNEGLAVMNRLSKAA 373


>gi|325971426|ref|YP_004247617.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta sp. Buddy]
 gi|324026664|gb|ADY13423.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta sp. Buddy]
          Length = 437

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 108/324 (33%), Positives = 171/324 (52%), Gaps = 9/324 (2%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I SI     +++    L  G  +A PTETVYGL  D+ N  A++ ++  K+RP  +PLI 
Sbjct: 117 IPSIQLPKLIKEQAALLAQGKLVAFPTETVYGLGADALNEEAVKSIFAAKQRPFFDPLIV 176

Query: 63  HVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
           H++ +  ++     +DP +  L   FWPGPLTLVL    +  +  + TAN +T   R+P 
Sbjct: 177 HIAKLEQLEGLVVDLDPRARLLMDHFWPGPLTLVLKKHPS--VPAIVTANSQTVAIRMPS 234

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 LI+  G  +A PSANR G  S T   H+    + + I  I+DGG   +G+EST+
Sbjct: 235 NPLALNLIQASGKAIAAPSANRFGYTSPTTATHV-KEQLGERIDAILDGGACTVGIESTV 293

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTP-QSPGMLKSHYAPRSQVRL 238
           +++  E    ILRPG + IE LK  +  V +   V  T T  +SPG+L+SHYAP + + L
Sbjct: 294 LSLCTEIP-TILRPGKIGIEELKPLLGEVIVTKQVGPTDTHLESPGLLESHYAPTTPLYL 352

Query: 239 -RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
              + +   ++ +       + +      + +S+T   +EAA  L+  ++  D      +
Sbjct: 353 VDDVTLYKDQSDVGVLLFEKQKVPFKGPVVYVSETENAEEAASRLYWAIRHLDTMHLRCM 412

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
             S +P  G+G+AINNRL +A+A 
Sbjct: 413 VGSLLPEVGIGVAINNRLRKASAK 436


>gi|148553004|ref|YP_001260586.1| translation factor SUA5 [Sphingomonas wittichii RW1]
 gi|148498194|gb|ABQ66448.1| translation factor SUA5 [Sphingomonas wittichii RW1]
          Length = 313

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 134/316 (42%), Positives = 191/316 (60%), Gaps = 13/316 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A   +  GLP+ +PTETVYGLA D+ +  A+  +Y  K RP+ NPLI HV+D+
Sbjct: 10  DPTGIAEAAALIARGLPVGVPTETVYGLAGDATSGEAVAAIYAAKGRPSFNPLIVHVTDL 69

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
           +M  + A + PL+  LA+ FWPGPLT+VL     + I  L+TA L +   R+P     + 
Sbjct: 70  AMAGRVAILPPLARRLAERFWPGPLTMVLPAAPGSPIASLTTAGLPSVAVRMPAHPAIRA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PLA PSAN SG IS T  +H+  S +   I L++D G + +G+ESTIV V+ +
Sbjct: 130 LILASGRPLAAPSANASGSISATRAEHVARS-LAGRITLVLDDGPTAVGIESTIVAVETD 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            ++R+LRPG + +E L  A  V +E   D +   ++PG + SHYAP   +RL A      
Sbjct: 189 -RLRLLRPGAIIVEMLAEAAGVAVERRGDGS--IEAPGQMASHYAPSKPLRLNAERAKAG 245

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E LI FG V           + LS +G+L EAA  LF+ +  AD S A++IA + +P+ G
Sbjct: 246 EYLIGFGAVAGD--------VTLSASGRLDEAAARLFDLLHAADQSDAAAIAVAPVPSDG 297

Query: 307 LGIAINNRLERAAAPR 322
           LG+AIN+RL+RAAAPR
Sbjct: 298 LGLAINDRLQRAAAPR 313


>gi|18313733|ref|NP_560400.1| sua5 family protein [Pyrobaculum aerophilum str. IM2]
 gi|18161288|gb|AAL64582.1| sua5 family protein [Pyrobaculum aerophilum str. IM2]
          Length = 343

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 96/326 (29%), Positives = 153/326 (46%), Gaps = 13/326 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   ++ A E L  G  +A PTETVYGL   +       ++++ K RP  NPLI HV  +
Sbjct: 12  DPEVIKTAAEVLKNGGIVAAPTETVYGLFTHAYREDGCVKVFKAKGRPMDNPLIVHVDSV 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            M  + A +      +    WPGP+T+V+       +    TA L T   R P       
Sbjct: 72  EMASEIAEIPEGIRGVLAQLWPGPVTIVVKSRGV--VPRCVTAGLNTVAVRAPAHPIPLA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+    P+A PSAN++G+ S T   HIL   +  E+ LIIDGG +  G+ESTI++V   
Sbjct: 130 IIKELNAPIAGPSANKAGRPSPTTATHIL-EDLGDEVDLIIDGGPTFFGVESTIIDVT-R 187

Query: 187 KKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
           K   +LRPG   +E L++         +   + E     +PGM   HYAP + + +    
Sbjct: 188 KPPALLRPGPFTVEELEKFFGEIQIPPVARGLAEAEVALAPGMKYKHYAPDTMLVIVHFD 247

Query: 243 VNPREALIRFGNVPIKNI----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
           +     +++   + +  +    + A    +L     L E A NL+  ++  D    +   
Sbjct: 248 LAEAVKVLKARGLKVAVLCAAGKCADADASLHLGTDLYEVAKNLYKSLRDLDKLSVNIGI 307

Query: 299 FSSIPNHGLGIAINNRLERAAAPRNQ 324
             ++   G+G+AI NR+ +AAA R  
Sbjct: 308 IPAVEERGIGLAIMNRIRKAAAHREA 333


>gi|110597199|ref|ZP_01385488.1| Sua5/YciO/YrdC/YwlC [Chlorobium ferrooxidans DSM 13031]
 gi|110341390|gb|EAT59855.1| Sua5/YciO/YrdC/YwlC [Chlorobium ferrooxidans DSM 13031]
          Length = 315

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 107/328 (32%), Positives = 160/328 (48%), Gaps = 21/328 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TDS    +A   L++G  +A PTETVYGL     +P AI ++++ K RP  NPL
Sbjct: 1   MQTI-LTDST--EEAARILNSGCVVAFPTETVYGLGACICHPEAIGKIFQAKGRPGDNPL 57

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+ +I  +   A  ++  +  L + F+PGPLTLVL       +  + TA L T   R 
Sbjct: 58  IVHIYNIKQLDDVASEINESAEKLIERFFPGPLTLVL--KKNKSVPDIVTAGLDTVGVRC 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++ +     P+A PSAN SG  S T+  H +   +   I  I+ G  S IGLES
Sbjct: 116 PANPVAREFLRLACGPVAAPSANLSGLPSSTSW-HAVFKDLDGRISCILKGEESTIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+      V +LR G +  E L+  +  + L     + S P+SPG+   HYAP++ + 
Sbjct: 175 TIVDCSGASPV-LLRAGAITFEALQEVVPGITLNAGTGKESRPKSPGLKYLHYAPKASIV 233

Query: 238 L----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           L      I   P  A I     P + +  A   ++       +E    LF++ ++ D  G
Sbjct: 234 LCTPHEPITAEPDSAYIGLSR-PPEGVRVARHCIS------PEEYGRELFSFFRLCDAEG 286

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAP 321
              I      + G+G AI +RL RAA  
Sbjct: 287 IRVIYCELPSSTGIGRAIRDRLTRAAGK 314


>gi|238883207|gb|EEQ46845.1| protein SUA5 [Candida albicans WO-1]
          Length = 382

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 103/322 (31%), Positives = 158/322 (49%), Gaps = 31/322 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK---HASVDPLSL 81
           I  PTETVYGLA  + +  +++ +Y+ K RPA NPLI H+S I  +K+   +  +  + L
Sbjct: 56  IGFPTETVYGLAGSALSDESVKSIYKAKNRPADNPLIVHISSIEQLKRKLINYEIPQVYL 115

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L   FWPGPLT++L +   + I  L TAN  T   R+P     + LI     P+A PSA
Sbjct: 116 DLISHFWPGPLTILLPITKDSPISKLVTANQDTFAVRMPNHPVARALIAMSDTPIAAPSA 175

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N S + S T  +H+    +  +IPLI+DGG   +G+EST+++   +  + +LRPGG+ +E
Sbjct: 176 NASTRPSPTLAEHVY-HDLNGKIPLILDGGACDVGVESTVIDGLVDPPM-LLRPGGVSLE 233

Query: 201 TLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL--------RAIHVNPR 246
            +KR         V  +    +    ++PGM   HY+P ++V L         AI     
Sbjct: 234 DIKRVGGKLWENIVVAKKTAGKLEPVKTPGMKYRHYSPTAKVVLFVNCGDGINAIENYLT 293

Query: 247 EALIRFGNVPIKNIENA--------IISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSI 297
              +      I  +++          I   L  TG   E + NLF Y++  D+      I
Sbjct: 294 NNKVDASTTKIALLKSKHFGEDHPHFIIKRLGTTGN--EISHNLFKYLREVDEEDKVELI 351

Query: 298 AFSSIPNHGLGIAINNRLERAA 319
               I     G+A+ NRL +AA
Sbjct: 352 FVEGIDETNEGLAVMNRLSKAA 373


>gi|238019082|ref|ZP_04599508.1| hypothetical protein VEIDISOL_00944 [Veillonella dispar ATCC 17748]
 gi|237864337|gb|EEP65627.1| hypothetical protein VEIDISOL_00944 [Veillonella dispar ATCC 17748]
          Length = 347

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 102/340 (30%), Positives = 164/340 (48%), Gaps = 25/340 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI++      L      L  G  ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI
Sbjct: 8   QIITNPSEQELDMLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 67

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV +   +K     V   +  L   FWPGPLT+ L    +  +   +T  L     R P
Sbjct: 68  LHVPNSESIKPLVTEVSNTAQLLMDTFWPGPLTITLP--KSDLVPNRATGGLPRVALRCP 125

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L+E  G P+A PSAN SG+ S T  + +    +   I  I+D G   IG+EST
Sbjct: 126 DHKICRALLERAGVPVAAPSANISGRPSPTTAQDVY-HDMKGRISYILDAGPCTIGVEST 184

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
           +V V  + KV ILRPGG+    L+  +S  +EY    V+ T+ P++PGM  +HYAP + +
Sbjct: 185 VVEVH-DDKVIILRPGGITKAQLENVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAPM 242

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKT------------GKLKEAAFN 281
            +   +     +  +  +  I+     ++S    NL K             G       +
Sbjct: 243 TVVVGNPEVIASTFKELSEGIEGPIGCLVSHETYNLIKDDMRFMCHCFGHHGDALSLGHD 302

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  +   +++  + I    + ++G G+AI NR+E+A++ 
Sbjct: 303 FYKSLLHFNENHVTLILAEGVNDNGFGVAIMNRMEKASSH 342


>gi|239637409|ref|ZP_04678391.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603]
 gi|239597009|gb|EEQ79524.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus warneri L37603]
          Length = 347

 Score =  305 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 92/329 (27%), Positives = 154/329 (46%), Gaps = 15/329 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  S  + +  + +  G  +A+PTETVYGL  D+ N  A+  +YE K RP+ NPLI H+
Sbjct: 14  DILQSTDVLEIKDTVLNGGLVALPTETVYGLGADATNQEAVSHIYEAKGRPSDNPLIVHI 73

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            D+S +      ++P    L + FWPGP++ +L L S   + P  T  L +   R+P   
Sbjct: 74  HDMSQMNDFVDTLEPKVQSLMEAFWPGPISFILPLKSGY-LCPKVTGGLNSIAVRMPSHP 132

Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + +++    P+A PSAN SG+ S T  +H+    +   I  II+G  S+ GLEST+++
Sbjct: 133 IGRSVLQHIDKPIAAPSANISGRPSPTTFEHVF-QDLNGRIDGIINGDQSEEGLESTVLD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA- 240
              +   RI RPG +  + ++  +   +E    +E S P +PGM   HY+P + V +   
Sbjct: 192 CT-QYPFRIARPGSITKKMIENVLPNCIEASNYNEASQPIAPGMKYKHYSPDTPVTILKE 250

Query: 241 ------IHVNPREALIRFGNVPIKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIAD-DS 292
                  H   ++      +     +    I + L      +K+A   L++ +   D  +
Sbjct: 251 LNKKILDHNKWKQVAFVVPDSLSHFLPKEAIYIKLCDNVTDIKQANHLLYSILHEIDQRA 310

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAP 321
             +              AI NR+ +AA  
Sbjct: 311 DITHAYIYGFDESDQSEAIMNRMLKAAGN 339


>gi|298242303|ref|ZP_06966110.1| Sua5/YciO/YrdC/YwlC family protein [Ktedonobacter racemifer DSM
           44963]
 gi|297555357|gb|EFH89221.1| Sua5/YciO/YrdC/YwlC family protein [Ktedonobacter racemifer DSM
           44963]
          Length = 359

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 104/353 (29%), Positives = 168/353 (47%), Gaps = 36/353 (10%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     + + L  A   L AG  +  PTETVYGL   +  P A+ +++  K+RP  
Sbjct: 7   EIIPINARQPEEHVLAHAVTLLRAGELVVFPTETVYGLGAAALQPAAVEKIFAAKERPYS 66

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           +PLI H++  + ++     +   +  + + FWPGPLTLVL   +   +  L T+ L T  
Sbjct: 67  DPLIVHIASEADIEHLVRDISEQARQVMRHFWPGPLTLVLP--AHPRVPRLVTSGLDTVA 124

Query: 117 FRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       LI   G P+A PSANR   +S T  +H+  + +   +PLI+DGG S +G
Sbjct: 125 IRMPSHPVALGLIRALGAPVAAPSANRFMHVSPTTAQHV-EADLKGRVPLILDGGASTVG 183

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK---------RAISVELEYCVDETSTPQSPGML 226
           +ESTI+++  E    ILRPGG+ +E L+         RA S+       E    +SPG +
Sbjct: 184 VESTILDMSSELP-TILRPGGVSLEALRVLLPQVQPPRARSLANPDLAHEVEAQKSPGQM 242

Query: 227 KSHYAPRSQ----------------VRLRAIHVNPREALIRFGNVPIKNIENAIIS-LNL 269
             HYAPR                  + L+ +    +   +   +  +   +++  S   L
Sbjct: 243 LIHYAPRVPAFLFEGASMSMRHAMLLELQRLQRQGKTVGVLIADEDVAYFQSSGASMYVL 302

Query: 270 SKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                  + A  LF  ++  +D+G   I   + P  GLG+AI +RL +A   +
Sbjct: 303 GSEEDSTKVASRLFAGLRTLEDAGVDVILCRAFPETGLGLAIRDRLLKATGGK 355


>gi|108760186|ref|YP_629797.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
 gi|108464066|gb|ABF89251.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
          Length = 333

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 110/327 (33%), Positives = 166/327 (50%), Gaps = 14/327 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +    +L +A E L  G  +A+PTETVYGL+ ++ +  A+RR++ IK RPA +PLI H+
Sbjct: 13  RMIAPESLERAVELLRHGGVVALPTETVYGLSANAEDELAVRRVFAIKGRPATHPLIVHI 72

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             +  +   A  V   +  LA+ FWPGPLTLVL   +        T    T   RVP   
Sbjct: 73  PGVEHLNTWAREVPEAARKLAEAFWPGPLTLVLPRTARAT--DAVTGGQDTVALRVPNHP 130

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               +++  G  LA PSANR G++S T  +H+    +  ++ L++DGG   +G+ESTIV+
Sbjct: 131 VALAVLQKLGGGLAAPSANRFGKVSPTTAEHV-REDLGGDVDLVLDGGPCTVGVESTIVD 189

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL---- 238
           +   +   ILRPGGL  E ++R +  ++      +S  +  G L+SHYAPR+ V L    
Sbjct: 190 LSSNEPA-ILRPGGLAAEDVERVLGRKVPVRT--SSKVRVSGSLESHYAPRAGVVLTEPV 246

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A     R   +R G +   ++             +   AA  L+  ++ AD  G   
Sbjct: 247 QAVARVQELRGQGLRVGVLGPASLALPPDVPRFDVPDEPAGAARVLYARLREADTQGHDV 306

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRN 323
           +        GLGIA+ +RL RAAAPR 
Sbjct: 307 LVACLPAESGLGIAVRDRLSRAAAPRG 333


>gi|259479736|tpe|CBF70230.1| TPA: translation initiation protein Sua5 (AFU_orthologue;
           AFUA_2G09160) [Aspergillus nidulans FGSC A4]
          Length = 427

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 161/382 (42%), Gaps = 74/382 (19%)

Query: 11  ALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           A+ +A   L      +A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H+  + M
Sbjct: 43  AIAEAANLLRTSDVPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLQM 102

Query: 70  VKKH---------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           + +                +++ P+   L + FWPGPLT++L   S + + P  T+NL T
Sbjct: 103 LNRLLNPASDTSCPTKVVQSTIPPIYKALIERFWPGPLTILLPNPSGSRLAPEVTSNLTT 162

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P     + LI     PLA PSAN S + S T  +H+    +   I LI+DGG   
Sbjct: 163 FGVRMPLSPLARLLIHVADRPLAAPSANASTKPSPTAAEHVF-HDLQGRIELILDGGPCG 221

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLK 227
           +G+EST+V+        ILRPGG+ IE L+     E       +   D    P++PGM  
Sbjct: 222 VGVESTVVDGLSN-PPSILRPGGVSIEELRTCPGWENVQLAYHDGTYDVKEIPRAPGMKY 280

Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGN--------------------------VPIKNIE 261
            HY+P+++V L       +  +                               +P ++IE
Sbjct: 281 RHYSPKARVVLFEAGSKSQAIVDHVKRDLQDTAVGAHSIGLVRTRTWKRGLQLLPEEDIE 340

Query: 262 NAII----------------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
                                       +      +K+ A  LF  ++  D+     I  
Sbjct: 341 KMAKATASLVGSLVQFSIPVGGKTKEVFDCHLGTDVKDIARGLFAALRAMDEKQVDVIYV 400

Query: 300 SSIPNHG-LGIAINNRLERAAA 320
             + +   L  A+ NRL +AA 
Sbjct: 401 EGVSDTEYLAAAVMNRLRKAAG 422


>gi|124515366|gb|EAY56876.1| SUA5/yciO/yrdC family [Leptospirillum rubarum]
 gi|206601667|gb|EDZ38150.1| SUA5/yciO/yrdC family [Leptospirillum sp. Group II '5-way CG']
          Length = 339

 Score =  305 bits (781), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 107/319 (33%), Positives = 157/319 (49%), Gaps = 15/319 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E L  G  + IPTETVYGL  D+ NP A+RR++ IK RP  +PLI H+  I  ++
Sbjct: 6   IRQAVEHLKQGRTVVIPTETVYGLGADASNPEAVRRIFAIKGRPPGHPLIVHIEKIDCLE 65

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129
             A  + P+++ LA+ FWPGPLTLVL      ++ P  T   +T   RVP       L+ 
Sbjct: 66  SWAKTIPPVAVRLAERFWPGPLTLVLPRR--REVLPEVTGGQETVALRVPSHPVITALLR 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G  +A PSANR G++S T+ + +          +I++GG    GLESTI+  Q    V
Sbjct: 124 AFGGGIAAPSANRFGRLSPTSARDVY-EEFKDAAGMILEGGPCSFGLESTILGFQDGHPV 182

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
            +LRPG L   TL+  + V +        +P+ PG   SHY P + + L       R +L
Sbjct: 183 -LLRPGALSTGTLEEFLGVRILRSAAGADSPRVPGSSLSHYQPDTPLELLPGEDLVRRSL 241

Query: 250 I------RFGNVPIKNIENAIISLNLSKTGKLKEA---AFNLFNYMKIADDSGASSIAFS 300
                  + G +  +  E       L+     +EA      L+  +   D +G   I   
Sbjct: 242 SLSAQGRKVGILYRRAEEERFHGDGLTPVPMPREAEAYGQALYAVLHFFDRAGVDRILVE 301

Query: 301 SIPNHGLGIAINNRLERAA 319
             P  G   A+N+RL RAA
Sbjct: 302 FPPQTGEWEAVNDRLGRAA 320


>gi|110638807|ref|YP_679016.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406]
 gi|110281488|gb|ABG59674.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406]
          Length = 321

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 119/318 (37%), Positives = 173/318 (54%), Gaps = 17/318 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   L+    +AIPTETVYGLA ++ +  A+  ++ +KKRP+ +PLI H   I  +
Sbjct: 10  DITQAKRLLEENHVVAIPTETVYGLAGNALDIKAVATIFSVKKRPSFDPLIVHTHSIEAL 69

Query: 71  KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            +  +  P     LAK FWPGPLTL+L+      I  L T+ L     R+P    T  L+
Sbjct: 70  GEFVADIPEQAQLLAKAFWPGPLTLLLEKKEI--IPDLVTSGLNRVAVRIPNHPLTLALL 127

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           ++   PLA PSAN  G IS T  +H+ +  +  ++  I+DGG S IG+ESTI+  +   K
Sbjct: 128 QSLSFPLAAPSANPFGYISPTTAQHV-TDQLGDQVAYILDGGASNIGVESTIIGWE-NGK 185

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR------LRAIH 242
             ++R GGL IE ++  I   +      +S P +PGMLKSHYAPR  +R      L   +
Sbjct: 186 ATVMRVGGLSIEAIEAIIG-PVHVQAVSSSNPAAPGMLKSHYAPRIPMRAGNIETLLQTY 244

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
              + A++ F        +N I    LS  G + EAA +LF  M++ D S A  I    +
Sbjct: 245 AGKKIAVLSFQQAYPAAYKNYI----LSPEGNVTEAAQHLFAAMRVLDTSEADIILTEYV 300

Query: 303 PNHGLGIAINNRLERAAA 320
           P  GLG+AIN+RL+RA A
Sbjct: 301 PAVGLGLAINDRLKRACA 318


>gi|189502130|ref|YP_001957847.1| hypothetical protein Aasi_0735 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497571|gb|ACE06118.1| hypothetical protein Aasi_0735 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 325

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 113/323 (34%), Positives = 175/323 (54%), Gaps = 14/323 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A +FL  G  ++IPTETVYGLA ++ N  A+ +++ IK+RP  NPLI H+ DI  
Sbjct: 6   TDISLASKFLKQGEVVSIPTETVYGLAANAYNEAAVSKVFSIKQRPMSNPLIIHIGDIEQ 65

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           + +     P  ++ LA+ FWPGPLTL+L   +T  I  + TA       R+P    T +L
Sbjct: 66  INEFVKEIPSEAVILAQHFWPGPLTLLLPKKAT--IPDMVTAGSNKVAIRIPNHPVTLQL 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++T   PLA PSAN  G +S T  +H+    +  +IP I+ GG   +G+ESTIV  +  K
Sbjct: 124 LKTIPFPLAAPSANPFGYVSPTTTEHV-KEQLGDKIPYILMGGTCAVGIESTIVGFEDGK 182

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQ----SPGMLKSHYAPRSQVRL-RAIH 242
            + + R GGLEI ++++ +   + +     S P     +PG L  HY+P   ++L     
Sbjct: 183 TI-VYRLGGLEIASIEKLVGTVILHNNLTASNPIEKLVTPGSLSYHYSPNKLLKLGNMSD 241

Query: 243 VNPREALIRFGNVPIKNIENAI---ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
           +       + G +        +     + L+ TGK++EAA+NLF  ++  D      I  
Sbjct: 242 LLVTYGSQKVGILAFDQYYEGVNKGQQILLAPTGKVEEAAYNLFAALRELDQLDIDVILC 301

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
           S +P+ GLG+AIN+RL RA+A R
Sbjct: 302 SLVPHQGLGMAINDRLVRASASR 324


>gi|146423277|ref|XP_001487569.1| hypothetical protein PGUG_00946 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 403

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 107/351 (30%), Positives = 168/351 (47%), Gaps = 36/351 (10%)

Query: 1   MQIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           ++I        L  A + L      I  PTETVYGL   + +  +++ +Y+ K RPA NP
Sbjct: 50  LEISDPVTKKNLETAAKVLTTTHDVIGFPTETVYGLGGSALSDESVKSIYKAKNRPADNP 109

Query: 60  LICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           LI HVS IS +K+     +  +  +   L   FWPGPLT++L +  ++ I    TA   T
Sbjct: 110 LIVHVSSISQLKRKILPPNYQIPKVYESLIHKFWPGPLTILLPVHESSPILKFVTAGQST 169

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P     + LI     PLA PSAN S + S T   H+ +  +   IP I+DGG   
Sbjct: 170 FAVRIPQHPVARALIALSDTPLAAPSANASTRPSPTIASHVYND-LQGRIPYILDGGSCD 228

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLK 227
            G+E T+V+   +  + +LRPGG+ +E +K          V  +    +T   ++PGM  
Sbjct: 229 FGVELTVVDGLVDPPM-LLRPGGVSLEEIKLVGGEPWKDVVVAKKTAGKTEAVRTPGMKY 287

Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISL-------NLSKTGKLKE--- 277
            HY+P ++V L     + +EA+  +  +   N+++  I+L        +S T   KE   
Sbjct: 288 RHYSPTARVVLFVNCGDGKEAIDNY--ISSHNLQDCKIALLKSRHFVGISSTSANKESID 345

Query: 278 ---------AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                     + NLF Y++  D++G   I    I     G+A+ NRL +AA
Sbjct: 346 RELGTDGHTISHNLFRYLREVDETGVDMIFVEGIEETNEGLAVMNRLSKAA 396


>gi|89056386|ref|YP_511837.1| translation factor SUA5 [Jannaschia sp. CCS1]
 gi|88865935|gb|ABD56812.1| translation factor SUA5 [Jannaschia sp. CCS1]
          Length = 314

 Score =  304 bits (780), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 121/318 (38%), Positives = 171/318 (53%), Gaps = 20/318 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   + +A E L  G  +A+PTETVYGLA D+RN  A+ R++  K RP  NPLI HV  
Sbjct: 11  NDVAGIARAAEVLRDGGLLALPTETVYGLAADARNGAAVARIFAAKGRPTFNPLIVHVVS 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +   ++   V+  +  LAK FWPGP+TLVL   S   +  L +  L T   RVP     +
Sbjct: 71  LETAEELVEVNAQAHALAKAFWPGPMTLVLP--SKGRVADLISGGLDTLAVRVPAHPLAR 128

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            ++  +G P+A PSAN SGQIS T   H++ + +   +  ++DGG   +GLESTI+    
Sbjct: 129 AVLGAFGGPVAAPSANPSGQISPTMAAHVV-AGLGSAVEAVLDGGACGVGLESTIL-APS 186

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           E  VR+LR GG+  E ++  +   +          ++PG ++ HYAPR+QV L ++   P
Sbjct: 187 EGGVRLLREGGVSREAVEAVVGPVVADLTPG--RIEAPGQMERHYAPRTQVVLGSVAT-P 243

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS----GASSIAFSS 301
            + +I FG V             LS+ G L EAA  LF  +  AD      GA  I  + 
Sbjct: 244 GDVMIGFGAVGGD--------FTLSERGDLVEAAERLFATLHAADTLALTRGAQVIRVAE 295

Query: 302 IPNHGLGIAINNRLERAA 319
           +P  GLG AIN+RL RAA
Sbjct: 296 VPEVGLGRAINDRLRRAA 313


>gi|150020136|ref|YP_001305490.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis
           BI429]
 gi|149792657|gb|ABR30105.1| Sua5/YciO/YrdC/YwlC family protein [Thermosipho melanesiensis
           BI429]
          Length = 335

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 17/330 (5%)

Query: 2   QIMSITDSNALRKA--CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +I+ I   + +  +  C+ + +G  +A PTETVYGL   + N  A+ +++++K R   NP
Sbjct: 4   KILKIKTLSDIDISYPCKVIKSGGLVAFPTETVYGLGASASNGEAVDKIFKVKGRAKDNP 63

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           LI HV+ +  + +   V+     + +   PGP+T V+   ++       TA+L T   R+
Sbjct: 64  LIVHVAFVDTLYEIGEVNEKYRKVIEQITPGPITFVIRKKAS--FPKNVTASLNTVGVRI 121

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P     + +  Y  P+A PSAN SG+ S T+   ++   +  +I  IID G +  G+EST
Sbjct: 122 PAHPVARKLCEYAGPIAAPSANLSGKPSPTDASAVI-EDLFGKIECIIDAGNTPFGIEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLK----RAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           I+++  +  + ILRPG + IE L       I  +         TP++PGM   HYAP   
Sbjct: 181 IIDLSGDIPI-ILRPGPITIEKLHELFGEVIIPDFVKNAKTVETPKAPGMKYRHYAPEKP 239

Query: 236 VRLRAIHVNPREALIRFGNVPI-------KNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           V +       +   I      +       K      + + L         A NLF  ++ 
Sbjct: 240 VYIFERKNRKKIIEIAHKEKGVILCPKEHKRFYPGDMVVVLGSLENPYTIAQNLFRLLRQ 299

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERA 318
            D           +   G+  ++ NRL++A
Sbjct: 300 IDKMDFQIAYVEKLEERGILFSVMNRLKKA 329


>gi|296116654|ref|ZP_06835264.1| hypothetical protein GXY_12643 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976866|gb|EFG83634.1| hypothetical protein GXY_12643 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 335

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 127/327 (38%), Positives = 174/327 (53%), Gaps = 11/327 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    + D   + +A + L  G  +A  TETVYGL  D+ N  A+ R++  K+RP  NPL
Sbjct: 13  MTQRLVADRAGITRAADILRTGGLVAFGTETVYGLGADATNAVAVARIFAAKERPTFNPL 72

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I H  D +    HA  D  +  LA  FWPGPLT+VL   +   I  L+ A L +   RVP
Sbjct: 73  ISHFPDAAAAFVHAMADGRAHRLAHRFWPGPLTMVLPRAAGCAISDLAGAGLPSVAVRVP 132

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L+   G P+A PSAN SG +S +  +H+L   +  +I  I+D G   +G+EST
Sbjct: 133 DSDTARALLAAAGVPVAAPSANPSGGVSPSRAEHVL-DGLEGKIDAILDSGPCAVGVEST 191

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++     V +LRPGG+ IE L+              + P +PG L SHYAP   VRL 
Sbjct: 192 IVDLTGTHPV-LLRPGGITIEALREVCPDITTPHDTSDARPVAPGRLSSHYAPTLPVRLD 250

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DSGAS 295
           A  V P EAL+ FG      +  + ++ NLS+  KL+EAA  LF  ++  D      G  
Sbjct: 251 AQTVAPDEALLAFG----AELPGSPLTWNLSQGEKLEEAAARLFAGLRFLDMEGRRRGLR 306

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322
           +IA   +P HGLG AI +RL RAA PR
Sbjct: 307 AIAVQPVPTHGLGAAIGDRLSRAACPR 333


>gi|168700740|ref|ZP_02733017.1| translation factor SUA5 [Gemmata obscuriglobus UQM 2246]
          Length = 331

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 102/324 (31%), Positives = 159/324 (49%), Gaps = 19/324 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S+ + +A   + +G  +A PTETVYGL  +  +  A+  ++E K RP+ NPLI HVSD 
Sbjct: 14  ESDVIGRAAAVVRSGGLVAFPTETVYGLGANGLSAAAVAGIFEAKGRPSTNPLILHVSDA 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S V   A+  P +   LA  FWPGPLTLV+    +  +  + TA   T   R P     +
Sbjct: 74  SEVLNVAAAWPATAQTLAARFWPGPLTLVVPKRDS--VPNIVTAGGPTVAVRCPNHAVAR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G PLA PSANRS ++S T  +H+L   +   I +++DGG    GLEST+V+V  
Sbjct: 132 ALIRAAGVPLAAPSANRSTELSPTRAEHVLK-GLNGRIAIVLDGGPCSGGLESTVVDVTG 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           E   R+LRPG + +  L+      +E         ++PG +  HY+PR+ + L       
Sbjct: 191 EIP-RVLRPGLITVPMLEAVCG-RVEVGTKSEGVARAPGQMVKHYSPRTPLVLVDRADEA 248

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTG---------KLKEAAFNLFNYMKIADDSGASS 296
             A      + ++ +   ++  +L  T          +  + A +L+  +   D+     
Sbjct: 249 ERARAAASRLGLRAV---VVGFDLPLTAASMYRAMMFEPDQYAADLYAVLHELDNGRYDQ 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P+     A+ +RL RAAA
Sbjct: 306 IVVEMPPDTPEWAAVRDRLTRAAA 329


>gi|167388661|ref|XP_001738645.1| sua5 [Entamoeba dispar SAW760]
 gi|165898009|gb|EDR25013.1| sua5, putative [Entamoeba dispar SAW760]
          Length = 357

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 103/328 (31%), Positives = 150/328 (45%), Gaps = 21/328 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  +  A + +  G  +  PTETVYGL  D   P AI +++++K RP  NPLICH+SDI
Sbjct: 28  DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M+ K  A V   +  L K FWPG LT++     T  +    TA L T   R+P      
Sbjct: 88  EMLNKLAAHVSEDAHKLIKRFWPGALTIIFPRNET--VPNEVTAGLNTVGVRMPSHPIAY 145

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I+    P+A PSAN S + S T  +H +   +   I +IIDGG   IG+EST++ +  
Sbjct: 146 EFIKQCKTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGACDIGVESTVL-LLG 203

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRLRAI 241
            +   ILRPGG+ +E L+  I     Y +       + P +PGM   HYAP     +   
Sbjct: 204 NEHPTILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAPSVDTIVITG 263

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSK---------TGK-LKEAAFNLFNYMKIADD 291
                + +              ++  +L           TG   K  A  LF  M+  D 
Sbjct: 264 DKRSEKLIELCHEYMKSGKRVGVVCWSLESLNCTLFMKVTGDRYKGMAHALFTDMRDLD- 322

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAA 319
                I    +     G+A+ NR ++AA
Sbjct: 323 GKVDIILIEGVQEIKEGLAVMNRAKKAA 350


>gi|302383673|ref|YP_003819496.1| Sua5/YciO/YrdC/YwlC family protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194301|gb|ADL01873.1| Sua5/YciO/YrdC/YwlC family protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 325

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/313 (36%), Positives = 161/313 (51%), Gaps = 13/313 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L  A   L AG  + +PTETVYGLA D+    A+ R++E K RP  NPLI HV+D  
Sbjct: 22  SEGLDAAVAALRAGDLVILPTETVYGLAADAGRAEAVARIFEAKGRPRFNPLIAHVADTG 81

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
             +  A  D  +  LA  FWPGPLT+V  +     +  L+ A L +   RVP     + L
Sbjct: 82  AAEAIAVFDDAARALAAAFWPGPLTIVAPVRPGDRVCDLARAGLDSVAVRVPGHPVARAL 141

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +G P+  PSANRSG+ S T     +  +        +DGG   +G+EST+V+V  + 
Sbjct: 142 LQAFGGPVVAPSANRSGRPSPTTFADAMEET-GSSAAAALDGGPCDVGVESTVVSVL-DG 199

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           +V +LRPG +  + ++  +        +     +SPG L  HYAP + VR+ A      E
Sbjct: 200 RVTLLRPGAVTRDQIEALVG----PLAESDHGHRSPGRLTLHYAPDAPVRIDAETAGEGE 255

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            L+ FG        +     NLS +G  +EAA  LF  ++ AD      IA + +P  GL
Sbjct: 256 ILLGFGP------GSGDPRWNLSPSGDPREAAAKLFRLLREADREHPVGIAVAPVPMAGL 309

Query: 308 GIAINNRLERAAA 320
           G AIN+RL RAA 
Sbjct: 310 GEAINDRLRRAAG 322


>gi|149185276|ref|ZP_01863593.1| putative translation factor [Erythrobacter sp. SD-21]
 gi|148831387|gb|EDL49821.1| putative translation factor [Erythrobacter sp. SD-21]
          Length = 312

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 121/315 (38%), Positives = 171/315 (54%), Gaps = 18/315 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + +A E L AG  +A+PTETVYGLA  + +  A+  +YE K RP+ NPLI HV+ +
Sbjct: 13  DKGGMARAAEILRAGGLVAVPTETVYGLAARADDMAAVSLIYEAKGRPSFNPLIVHVASM 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + +  A   P +  LA+  WPGPLTLVL   +   +    TA L+T   R+P     +K
Sbjct: 73  KVARNLAEFSPEAEALAEAHWPGPLTLVLPSRTDAKLADTVTAGLETVAVRMPNHPIMRK 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++++   PLA PSANRSG IS T  +H+L+S +   I  ++DGG  + G+ESTI  V+ +
Sbjct: 133 ILQSVDVPLAAPSANRSGFISPTTAEHVLTS-LDGRIDAVLDGGECRAGVESTIAAVRAD 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            +V +LRPG ++++    A         D     ++PG L SHYAP   VRL  I     
Sbjct: 192 GRVEVLRPGPVQLDAGAMA--------QDGVGKIEAPGQLASHYAPGKPVRLDVIRSVED 243

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E  I FG V            +LS  G L+EAA  L+  +     S    IA + IP  G
Sbjct: 244 EFYIGFGKVTGD--------CSLSVGGDLEEAASRLYACLHEGAASHKPRIAIAPIPAEG 295

Query: 307 LGIAINNRLERAAAP 321
           +G AIN+R+ RAA P
Sbjct: 296 IGRAINDRIRRAATP 310


>gi|296122108|ref|YP_003629886.1| Sua5/YciO/YrdC/YwlC family protein [Planctomyces limnophilus DSM
           3776]
 gi|296014448|gb|ADG67687.1| Sua5/YciO/YrdC/YwlC family protein [Planctomyces limnophilus DSM
           3776]
          Length = 322

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/327 (37%), Positives = 177/327 (54%), Gaps = 17/327 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + ++D+    +A   L AG  +A+PTETVYGLA    NP  + +++  K RP  +PL
Sbjct: 1   MQTVVLSDA---EEAIRALKAGELVALPTETVYGLAGLGLNPEVLAKIFSAKDRPTFDPL 57

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    V + A  V   +  L   FWPGPLTLVL       +  L+TA L T   R 
Sbjct: 58  ILHIARPGQVSQLASEVPHDARRLVDTFWPGPLTLVLPKKPH--VPDLATAGLGTVAVRC 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     +K+IE  G PLA PSAN  G++S T+ +H++   +   IP ++DGG  ++G+ES
Sbjct: 116 PKHPLMRKIIEKVGVPLAAPSANLFGRLSPTSAQHVV-EQLEGRIPYVLDGGACEVGVES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQ 235
           TI+    +  V +LRPGGL +E ++  I          V+  ++  +PGML  HYAP + 
Sbjct: 175 TIIGFMPDG-VYLLRPGGLPVEQVEHMIGPLKRLPAQSVETAASQAAPGMLMKHYAPATP 233

Query: 236 VRL--RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           + +  R   + P + ++ F   P  ++      + LS    L+EAA  LF  +   D SG
Sbjct: 234 LVMIDRFEELKPGDGVLTFCGRPQGHL---GPVMELSPRKNLQEAASLLFQALHQLDRSG 290

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              IA    P HGLG+AIN+RL RAAA
Sbjct: 291 VPRIAALRFPEHGLGMAINDRLSRAAA 317


>gi|261252205|ref|ZP_05944778.1| YrdC family protein [Vibrio orientalis CIP 102891]
 gi|260935596|gb|EEX91585.1| YrdC family protein [Vibrio orientalis CIP 102891]
          Length = 319

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/318 (29%), Positives = 161/318 (50%), Gaps = 7/318 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q +S ++S  + +A E L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI
Sbjct: 4   QHLSASNSKDIEQAKEILASGELVAIPTETVYGLAADASNPEAVKKIFAAKGRPANHPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+  +  +   A  +   +  +A  +WPGP+TL+L+        P+ T  L+T   R+P
Sbjct: 64  VHIGSVEQLTDWATDIPQEAYTIASAYWPGPVTLLLNKAEQAT--PVVTGGLETIGVRMP 121

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  + + G  +A PSAN   ++S T+ +H+++S +  +I  ++DGG    GLESTI
Sbjct: 122 AHDVFASLLSSGMAVAAPSANPYKKLSPTSAQHVMNS-LGGKIAAVLDGGDCVHGLESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +++  ++  R+LR G +    L   +  E+     +      PG + SHY P ++VRL  
Sbjct: 181 IDLT-QRPFRVLRTGPVTATQLSETLGKEV--LAPKAHAVAVPGNVTSHYQPNTKVRLVD 237

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
           +             +    IE ++   +      + + + +L+  +  AD  G   I   
Sbjct: 238 LSDIQSANGNNIACLHYSAIEASLGFKSKLMPQDVAQYSHDLYRALDEADKWGCDEIWVE 297

Query: 301 SIPNHGLGIAINNRLERA 318
             P      A+++RL RA
Sbjct: 298 RPPVSEAWFAVHDRLNRA 315


>gi|323490905|ref|ZP_08096100.1| hypothetical protein GPDM_16096 [Planococcus donghaensis MPA1U2]
 gi|323395385|gb|EGA88236.1| hypothetical protein GPDM_16096 [Planococcus donghaensis MPA1U2]
          Length = 330

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 109/332 (32%), Positives = 161/332 (48%), Gaps = 23/332 (6%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++ + N+  +A E L +G  +A PTETVYGL  D+ N  A+ +++E K RPA NPLI HV
Sbjct: 11  NVDEENSYAQAVENLKSGEVVAFPTETVYGLGADATNFEAVSKIFEAKGRPADNPLIVHV 70

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
                   +   V   +L     FWPG LTL++     T      TANL+T   RVP   
Sbjct: 71  DKKESALNYVQEVSAKALQCMDAFWPGALTLIMQAKPET-FANNVTANLQTVGIRVPNHP 129

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              KL++    PLA PSAN SG+ S T   H+    +   IPLI+DGG ++IG+EST+++
Sbjct: 130 VALKLLQEVKLPLAAPSANTSGKPSPTLASHV-RHDMDGRIPLILDGGATEIGIESTVLD 188

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             CE  V ILRPG +  E +++ I        ++ + P+SPGM   HYAP + + L    
Sbjct: 189 TTCEPPV-ILRPGKITKEQIEQVIGTVRTSSGNKDNVPKSPGMKYMHYAPTAPLYLIEDE 247

Query: 243 --------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
                      +E   R   +   +   A  +  LS           L+  ++  D + A
Sbjct: 248 KSLIEKAIQYVQEKGKRVAVISETDYPLADFNFPLSMES--------LYASLRECDLTDA 299

Query: 295 SSIAFSSIPNHGLGI-AINNRLERAAAPRNQS 325
             I    + +      A+ NRLE+AA  +  S
Sbjct: 300 DLILA-PVKSSDQDQDALMNRLEKAADHKWFS 330


>gi|13542129|ref|NP_111817.1| translation factor (SUA5-related) [Thermoplasma volcanium GSS1]
 gi|14325560|dbj|BAB60463.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 361

 Score =  303 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 159/323 (49%), Gaps = 17/323 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + L  A E L  G  +  PTETVYGL  ++ N  A ++++  K RP+ NPLI H+SD+ 
Sbjct: 14  KDDLYYAVEALKHGGTVVFPTETVYGLGANAMNDEACKKIFIAKGRPSDNPLIVHISDMD 73

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++  +  V      + K  WPGPLT+V++      I    TA L T   R+P     + 
Sbjct: 74  QLENFSKNVKEEYKAILKELWPGPLTVVVE--KANGIPDTVTAKLPTVAIRMPDDSIARN 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI+  G P+A PSAN S + SIT+ K  +   +   + +IID G  K G+ESTI+++  +
Sbjct: 132 LIDMAG-PIAAPSANISTKPSITDSKDAIR-FLDGRVDVIIDAGKVKFGIESTIIDLTQD 189

Query: 187 KKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRL---R 239
             VR+LRPG   +E L+         ++     E     +PGM   HY+P  ++ L   R
Sbjct: 190 -PVRLLRPGAFSVEDLEPLFGKITVDKVALGKAEAKVAITPGMKYRHYSPNKKIFLCKDR 248

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLN---LSKTGKLKEAAFNLFNYMKIADDSGASS 296
            +  + +E L   G +      +  IS N   + +   L   A NLF+     DDS  + 
Sbjct: 249 EVVESLKEELPNNGVLMCTEEVSQGISTNKIIVGRDSDLYSVAHNLFSSFIELDDSSYNY 308

Query: 297 IAFSSIPNHGLGIAINNRLERAA 319
                    G+G+AI NR+ +A+
Sbjct: 309 GVIIPFEEKGIGLAIMNRIRKAS 331


>gi|163786575|ref|ZP_02181023.1| translation factor, SUA5-family protein [Flavobacteriales bacterium
           ALC-1]
 gi|159878435|gb|EDP72491.1| translation factor, SUA5-family protein [Flavobacteriales bacterium
           ALC-1]
          Length = 318

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/327 (34%), Positives = 175/327 (53%), Gaps = 20/327 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+S      + KA + L A   +AIPTETVYGLA +  +  AI+ ++E K+RP  NPL
Sbjct: 1   MSIVS----KDISKAVDLLTAEELVAIPTETVYGLAGNIYSEKAIKSIFETKQRPFFNPL 56

Query: 61  ICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+  +  ++K  A +      LA+ FWPGP+TLVL     T I  + TA   T   RV
Sbjct: 57  IVHIPSLDYLEKIVAYIPEKGKLLAEAFWPGPITLVL--KKKTIIPDIITAGKDTVAVRV 114

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T +L+     PLA PSAN    IS T  +H+  +    +I +++DGG  K G+ES
Sbjct: 115 PNHPLTLELLNQLDFPLAAPSANPFSSISPTTAEHV-ETYFMDKIKMVLDGGACKSGIES 173

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TI+  + ++ + I R G   IE ++  +  ++E    +  +P +PGML+ HYAP+++  L
Sbjct: 174 TIIGFEDDEPI-IYRLGSTPIEAIENVVG-KIEVKNKKEISPDAPGMLERHYAPKTKTIL 231

Query: 239 -------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                     H N R  ++ F ++   ++    I   LS+   L+EAA  L++ +   D 
Sbjct: 232 TRNLSKSIEKHRNKRIGVLMFNDILNDDVIQFKIV--LSEGKNLEEAASKLYDALHQLDK 289

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERA 318
                I    +P++GLG +IN+RLERA
Sbjct: 290 QDLDIIIAEQLPDYGLGKSINDRLERA 316


>gi|27377681|ref|NP_769210.1| hypothetical protein bll2570 [Bradyrhizobium japonicum USDA 110]
 gi|27350826|dbj|BAC47835.1| bll2570 [Bradyrhizobium japonicum USDA 110]
          Length = 329

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 131/301 (43%), Positives = 169/301 (56%), Gaps = 8/301 (2%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
            +A  TETVYGL  D+ N TAI  LY  K RPA NPLI HV+DI+  +     D  +L L
Sbjct: 29  LVAFATETVYGLGADAANATAIAHLYAAKGRPAFNPLIAHVADITAAQAIGRFDARALKL 88

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           A+ FWPGPLTLV+       +  L+TA L T   R+P     + ++  +G  +  PSAN 
Sbjct: 89  AEAFWPGPLTLVVPKTDGCPVADLATAGLDTVAIRIPAHPVAQAILRAFGGAVVAPSANI 148

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG +S T   H+  S +   I LI+DGG   +G+ESTIV         +LRPGGL  E +
Sbjct: 149 SGHVSPTLAAHV-ESDLSGRIDLIVDGGPVAVGVESTIVGCLNA--PMLLRPGGLSRERI 205

Query: 203 KRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK 258
           +  +   L     E     S P +PGML SHYAPR+ VRL A  V P EAL+ FG   + 
Sbjct: 206 EAVLGAALARPPAEAGSDDSQPLAPGMLASHYAPRANVRLNAREVAPGEALLAFGPSRLP 265

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
            ++ A   +NLS T  L EAA NLF Y++  D  G  +IA  +IP   LG AIN+RL RA
Sbjct: 266 GLDAAAAVMNLSPTADLDEAAANLFGYLRALDAKGPRAIAVMTIPEDDLGEAINDRLRRA 325

Query: 319 A 319
           A
Sbjct: 326 A 326


>gi|82701740|ref|YP_411306.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196]
 gi|82409805|gb|ABB73914.1| translation factor SUA5 [Nitrosospira multiformis ATCC 25196]
          Length = 364

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 102/330 (30%), Positives = 155/330 (46%), Gaps = 24/330 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A   L  G  +A PTETVYGL  +  +P+A+ R++EIKKRP  +PLI H +D S 
Sbjct: 7   SEIDAAAALLKKGGVVAFPTETVYGLGAEVSSPSAVARIFEIKKRPLDHPLIVHFADASR 66

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +   A  V   +  LA+ FWPGPLTL+L    +  +    T    T   RVP       L
Sbjct: 67  LSHWAREVPQQAWRLAECFWPGPLTLILPR--SRHVPEKVTGGQDTVGLRVPDHPVALAL 124

Query: 128 IETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +   G    LA PSANR G +S T   H+       E+ +++DGG  ++GLESTIV  + 
Sbjct: 125 LRELGPDRALAAPSANRFGHVSPTTAAHV-REEFGDELDMVLDGGPCQVGLESTIVGFEG 183

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
            +   ILRPGG+++  L   +   +    +   + + PG L SHYAP + + L       
Sbjct: 184 -QTAVILRPGGIQLAALAEVLDGNVMLSQEAERSVRVPGALPSHYAPSTPLELLPADPLW 242

Query: 246 REAL---------------IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
             AL                R  ++P  + EN  +  +     + +E A  L+  ++  D
Sbjct: 243 ARALELEAKGMRVAVMGWRRREHSLPRHHPENEPVVFSAMPE-EPEEYARQLYATLRRFD 301

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                 +     P     +AI +RL RA++
Sbjct: 302 RGHFDRLLVEKPPETAAWVAIADRLRRASS 331


>gi|313677607|ref|YP_004055603.1| translation factor sua5 [Marivirga tractuosa DSM 4126]
 gi|312944305|gb|ADR23495.1| translation factor SUA5 [Marivirga tractuosa DSM 4126]
          Length = 317

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 115/314 (36%), Positives = 181/314 (57%), Gaps = 9/314 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A E LDA   I +PTETVYGLA +      + +++E+K RP  +PLI H   ++ 
Sbjct: 6   SDINQAKELLDADQLIGLPTETVYGLAGNGLKANVVSKIFEVKNRPHFDPLILHSYSLNA 65

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
           + ++    P +   LAK FWPGPLT++L+      I  L+ + L    FR+P       L
Sbjct: 66  ISEYVKEIPETAKILAKAFWPGPLTILLER--NEKIPDLTCSGLNRVAFRIPKHPNALSL 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++   +PLA PSAN  G IS TN +H+    +  +IP I++G IS++G+ESTIV  +  +
Sbjct: 124 LKILDYPLAAPSANPFGYISPTNSQHV-QQQLGDKIPFILEGKISEVGIESTIVGFENGE 182

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPR 246
            V I R GGL+++ ++  I  ++      +S P +PGMLKSHYAP   + L     +  +
Sbjct: 183 TV-IYRLGGLDVDQIESLIG-KVRILPHSSSKPDAPGMLKSHYAPSKNIILGNIEELIEQ 240

Query: 247 EALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            + ++ G +   K  ++   SL LSK+  + EAA NLF++++  D+S    I    +P+ 
Sbjct: 241 NSNLKLGVLSFSKYYKDVETSLMLSKSKDMHEAAKNLFSHLRKLDESNVDLIITEKVPSE 300

Query: 306 GLGIAINNRLERAA 319
           GLG AIN+RL+RAA
Sbjct: 301 GLGKAINDRLQRAA 314


>gi|167629001|ref|YP_001679500.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum
           Ice1]
 gi|167591741|gb|ABZ83489.1| sua5/ycio/yrdc/ywlc family protein [Heliobacterium modesticaldum
           Ice1]
          Length = 422

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 113/404 (27%), Positives = 160/404 (39%), Gaps = 93/404 (23%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   L AG  +A PTETVYGL  D+    A+  ++  K RP+ NPLI H++D  
Sbjct: 20  AEGLREAAACLQAGGLVAFPTETVYGLGADALQAEAVAAIFTAKGRPSDNPLIVHIADRD 79

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            V +       L+  LA+ FWPGPLTLVL   ++  I  + TA L T   R+P     + 
Sbjct: 80  DVARLTVGFPALARRLAERFWPGPLTLVLP--ASPQIPAVVTAGLATVAVRMPSHPVARA 137

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANRSG+ S T   H+    +   I  I+DGG   +GLEST+V+   +
Sbjct: 138 LIGEAGTPVAAPSANRSGRPSPTTAAHVW-EDLGGRIDGIVDGGDCDLGLESTVVDATGD 196

Query: 187 KKVRILRPGGLEIETLK--------------------------------------RAISV 208
             V ILRPGG+  E ++                                           
Sbjct: 197 VAV-ILRPGGVTREMIEALGLPVRTAFAAERLGEGTGAVAGTDAVAGTDAVAGTDAVAGT 255

Query: 209 ELEYCVDETS------------------TPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
           +     +E +                   P SPGM   HYAPR+ + L       +   +
Sbjct: 256 DAVAGTNEAAEAFCCDGDVEPGGGAGDFVPPSPGMKYVHYAPRAPLYLLDGGWEGQVEAL 315

Query: 251 RFGNVPIKNIENAIISLNL-------------------------------SKTGKLKEAA 279
           R    P     +      L                                    L   A
Sbjct: 316 RRLLSPSAERGDDAGPTGLLISEDTYRRIEPMLQQCGDAGHGEKWVVRLTGSREDLATVA 375

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
             LF  ++  D +  + I   + P+ G+G A+ NRLE+AA  R 
Sbjct: 376 RRLFGAIRAFDQTTVARIVAETYPHRGIGSALMNRLEKAAGGRR 419


>gi|88802068|ref|ZP_01117596.1| hypothetical protein PI23P_05377 [Polaribacter irgensii 23-P]
 gi|88782726|gb|EAR13903.1| hypothetical protein PI23P_05377 [Polaribacter irgensii 23-P]
          Length = 318

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 117/321 (36%), Positives = 163/321 (50%), Gaps = 12/321 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MSI  ++ + KA + L     +AIPTETVYGLA +  +  AI R++  KKRP  NPLI H
Sbjct: 1   MSIISTD-IEKAVQLLTDAQLVAIPTETVYGLAGNIYSEKAIHRIFSTKKRPFFNPLIVH 59

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +  I+ ++     +   +  LA  FWPG LTLVL       I  L TA   T   RVP  
Sbjct: 60  IPSIASLESIVTHIPEKAKLLAAAFWPGSLTLVL--KKNRSIPDLITAGKDTVAVRVPNH 117

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  L++    PLA PSAN  G IS T   H+  +    +I +I+DGG    G+ESTI+
Sbjct: 118 PVTLALLQQLPFPLAAPSANPFGSISPTKAAHV-EAYFKNDIQMILDGGSCANGIESTII 176

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--R 239
             + +  + I R G L +E ++  +  ++     E   P++PGML  HYAP +   L   
Sbjct: 177 GFENDTPI-IYRLGALALEDIEAVVG-KITIKNKEEEHPEAPGMLARHYAPNTNTFLVND 234

Query: 240 AIHVNPREALIRFGNVPIKNIENA--IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
                 +    + G +  K   NA  I  + LSKTG ++EAA NL+  M   D      I
Sbjct: 235 VAAEIQKYTNKKIGVLVFKTSLNAPNISEIILSKTGSMQEAAANLYAAMHALDAQELDLI 294

Query: 298 AFSSIPNHGLGIAINNRLERA 318
                P  GLG +IN+RL+RA
Sbjct: 295 IAEKFPEVGLGKSINDRLQRA 315


>gi|193215580|ref|YP_001996779.1| Sua5/YciO/YrdC/YwlC family protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089057|gb|ACF14332.1| Sua5/YciO/YrdC/YwlC family protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 315

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/313 (31%), Positives = 157/313 (50%), Gaps = 15/313 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A  FL     +A PTETVYGL  +  +  A+ +++ +K RPA NPLI H+S+++ +  
Sbjct: 10  KEAARFLLKDELVAFPTETVYGLGANIFSEEAVHKIFRVKGRPAQNPLIAHISNLTELIL 69

Query: 73  HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
               V   +  L   F+PGPLTLVL    +  +  + T+ L T   R+P     +  ++ 
Sbjct: 70  LVKRVTASAEKLIDAFFPGPLTLVLP--KSKYVPYVVTSGLDTIGVRMPSHQVAQAFLKA 127

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  +A PSAN SG+ S T  +++  + +   I  I+ GG S++GLESTIV+   +  V 
Sbjct: 128 CGVSVAAPSANLSGRPSPTTWQNV-EADLDGLISCILKGGRSEVGLESTIVDCTGKAPV- 185

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR----AIHVNPR 246
           +LR G + +E L+          + +    + PG    HYAP ++V L      IH  P 
Sbjct: 186 LLRAGAITLEQLQEITPAIKLAEISDDEPARCPGTKYKHYAPDAKVVLIDAPSEIHPEPS 245

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
            A I      I+  E +  SL       ++E A  LF++ +  D     +I    +   G
Sbjct: 246 SAYIG-----IEQPEASADSLITCSCVSIEEYAHQLFHFFRECDKKQVRTIFCQRVAKTG 300

Query: 307 LGIAINNRLERAA 319
           LG+A+ +RL RAA
Sbjct: 301 LGLALMDRLTRAA 313


>gi|198283490|ref|YP_002219811.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667682|ref|YP_002426096.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248011|gb|ACH83604.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519895|gb|ACK80481.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 328

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 96/318 (30%), Positives = 156/318 (49%), Gaps = 14/318 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+++A E L +G  +  PTETVYGL  D+ NP A+ R++  K RPA +PLI H++    +
Sbjct: 10  AMQRAAEILRSGGLVVFPTETVYGLGADAENPAAVARIFAAKGRPADHPLIVHMARRDHL 69

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            + +  + P +  LA+ +WPGPLTL+L       +    T    T   RVP       L+
Sbjct: 70  SQWSRDIPPAAFVLARRYWPGPLTLILHR--ACRVPDRVTGGQDTVGLRVPDHPLALMLL 127

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E +   +A PSANR GQ+S T V H+    +   +  I+DGG  ++G+ESTI+++   + 
Sbjct: 128 EAFSGGIAAPSANRFGQVSPTTVAHV-REELGDAMDFILDGGPCRVGIESTILDLSGHQP 186

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR-- 246
            R+LRPG + +  ++  +  E           ++PGML+SHYAPR+ + L          
Sbjct: 187 -RLLRPGAITLAEIEAVL--EQPVIPQGNDALRAPGMLRSHYAPRTPLYLVPTGHLKAEI 243

Query: 247 ----EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
                   R G + +   +     L           A  L+  ++  D  G   +   + 
Sbjct: 244 CRRLRQGQRVGVLAMPATQLPESCLRHHMPPHPAGWARELYAQLRALDQQGLDGLLIEAP 303

Query: 303 PNHGLGIAINNRLERAAA 320
           P+     A+++RL RAA+
Sbjct: 304 PSGADWQAVSDRLARAAS 321


>gi|27468631|ref|NP_765268.1| hypothetical protein SE1713 [Staphylococcus epidermidis ATCC 12228]
 gi|57867582|ref|YP_189286.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           RP62A]
 gi|251812173|ref|ZP_04826646.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876476|ref|ZP_06285342.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           SK135]
 gi|293366080|ref|ZP_06612768.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27316178|gb|AAO05312.1|AE016749_258 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57638240|gb|AAW55028.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           RP62A]
 gi|251804270|gb|EES56927.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281294728|gb|EFA87256.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           SK135]
 gi|291319803|gb|EFE60161.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726158|gb|EGG62630.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           VCU144]
 gi|329734140|gb|EGG70458.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           VCU045]
 gi|329735637|gb|EGG71920.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           VCU028]
          Length = 347

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 150/323 (46%), Gaps = 15/323 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  +    G  +AIPTETVYGL  ++RN  A+  +Y  K RP+ NPLI H+  I  + 
Sbjct: 21  IDEIKQTFLDGGLVAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLD 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                +D     L   FWPGP++ +L L     +    T  L++   R+P     + L++
Sbjct: 81  DFVEYIDDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T  +H+    +  ++  I++G   + GLEST+++   +   
Sbjct: 140 IVDEPIAAPSANISGRPSPTTFEHVNRD-LNGKVNGIVNGDQCEEGLESTVIDCT-QFPF 197

Query: 190 RILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-----RAIHV 243
           RI RPG +  + ++  +   +   + +E   P +PGM   HY+P + + +     + I  
Sbjct: 198 RIARPGSITQDMIETKLPHSINRQIYEENEKPIAPGMKYKHYSPETPLTIVKDLNKKIAN 257

Query: 244 NPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF 299
           + + + + F     +     EN+I        G  K A  NL+  +   D          
Sbjct: 258 DDKWSKVAFVFPESQRSLIPENSIFISLCENKGDFKSAGHNLYEILHELDQNEEIEEAYI 317

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
               ++    AI NR+ +AA+ +
Sbjct: 318 YGFEDNHHTEAIMNRMLKAASYK 340


>gi|148259247|ref|YP_001233374.1| Sua5/YciO/YrdC/YwlC family protein [Acidiphilium cryptum JF-5]
 gi|146400928|gb|ABQ29455.1| translation factor SUA5 [Acidiphilium cryptum JF-5]
          Length = 322

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 128/312 (41%), Positives = 174/312 (55%), Gaps = 11/312 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  +A  TETVYGL  D+ N +A+  +YE K RP  NPLI H  D     +HA+ 
Sbjct: 17  ELLRAGELVAFATETVYGLGADATNASAVAAIYEAKGRPRFNPLISHFPDADAAFRHAAA 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           D  +   A+ FWPGPLTLVL     +DI  L+TA L +   RVP     + L+   G P+
Sbjct: 77  DARAREAAQAFWPGPLTLVLPRRDESDIAALATAGLSSVAVRVPGHGIARALLAATGRPV 136

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG++S T   H++ + +   I  I++ G  ++GLES IV++     V +LRPG
Sbjct: 137 AAPSANRSGRLSPTRPAHVI-AGLEGRIAAILESGACEVGLESAIVDLTGATPV-LLRPG 194

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  ETL+  +   +    +  +  ++PGML SHYAP   +RL A      EA + FG  
Sbjct: 195 GISRETLEAVLG-PVSIASEMGAAVKAPGMLASHYAPVLPMRLGATAPEDGEAWLGFGIE 253

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPNHGLGIAI 311
           P        +S NLS  G L EAA  LF+ +   D     +G   IA + +P  GLG AI
Sbjct: 254 P---PTLPPVSRNLSPAGDLVEAAARLFDSLHELDAAAELAGLQRIAVARVPERGLGAAI 310

Query: 312 NNRLERAAAPRN 323
           N+RL RAAAPR+
Sbjct: 311 NDRLARAAAPRS 322


>gi|294792024|ref|ZP_06757172.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 6_1_27]
 gi|294457254|gb|EFG25616.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. 6_1_27]
          Length = 347

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 100/340 (29%), Positives = 166/340 (48%), Gaps = 25/340 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++      +      L  G  ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI
Sbjct: 8   KIITNPSEQDIDTLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 67

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV +   +K     +   +  L   FWPGPLT+ L    +  +   +T  L     R P
Sbjct: 68  LHVPNSESIKPLVTEISATAQALMDAFWPGPLTITLP--KSDLVPDRATGGLTRVALRCP 125

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L+E  G P+A PSAN SG+ S T  + + +  +   I  I+D G   IG+EST
Sbjct: 126 DHEACRVLLERAGIPIAAPSANISGRPSPTTAEDVYND-MNGRISYILDAGPCTIGVEST 184

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
           +V V  + KV ILRPGG+    L+R +S  +EY    V+ T+TP++PGM  +HYAP + +
Sbjct: 185 VVEVH-DDKVIILRPGGITKAQLERVVST-VEYDTALVNATTTPKAPGMKYTHYAPDAPM 242

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKTG------------KLKEAAFN 281
            +   +     ++ +  +  I+     ++S    NL K                     +
Sbjct: 243 TVVVGNPEDIASMFKALSEGIEGPIGCLVSHETYNLIKEDGRFMCHCFGHHRDALALGHD 302

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  +   +++  + I    + + G G+AI NR+E+A++ 
Sbjct: 303 FYKSLLHFNENHVTLILAEGVDDDGFGVAIMNRMEKASSH 342


>gi|218290081|ref|ZP_03494248.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239915|gb|EED07103.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 360

 Score =  302 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 102/341 (29%), Positives = 162/341 (47%), Gaps = 34/341 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+  + L  G  +A PTETVYGL  ++    A+RR++  K+RP  NPLI H++D   ++
Sbjct: 19  LREPAQSLRRGGLVAFPTETVYGLGANALEEEAVRRIFAAKERPRDNPLIVHIADDDQLR 78

Query: 72  KHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                +      ++ L + FWPGPLTL+L   +   + P           R+P     + 
Sbjct: 79  DVIDENQPLHEDAVRLMRAFWPGPLTLLLP--AGARLAPSVHPGQPLVGVRMPDHPVARA 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANRSG+ S T    + ++ +   I  ++DGG   IG+EST++ +   
Sbjct: 137 LIAEAGVPVAAPSANRSGRPSPTTPDDV-AADLDGRIDWLVDGGPCPIGVESTVL-LLEP 194

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
              RILRPGG+  E +   I   + Y     D  S P +PGM   HYAP ++V +     
Sbjct: 195 DCARILRPGGVTQEMIASVIDRPVLYAADVFDVASAPLAPGMKYRHYAPNARVHVWWGEP 254

Query: 244 NPREALIRFGNVPIKNIENAII---------------------SLNLSKTGKLKEAAFNL 282
              +  +R   +     ++ I+                        L      +E A +L
Sbjct: 255 EAIDEAMRAFLLEAVQDDDLIVPALIAPADFVRRFGWALSDERQAALPADTYAEELARHL 314

Query: 283 FNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAAAPR 322
           +  ++  D +GA+ +    + P HG+G A+ NRL +A+A R
Sbjct: 315 YRLLRAFDRAGATDVLVHGVDPTHGVGAAVMNRLYKASAGR 355


>gi|257077109|ref|ZP_05571470.1| Sua5 superfamily-related protein [Ferroplasma acidarmanus fer1]
          Length = 348

 Score =  301 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 18/331 (5%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ I + N   A++     + +G  +  PTETVYGL  D+ NP A  +++  K RPA N
Sbjct: 3   RIIHINNQNENYAIKVCAGIIKSGGTVVFPTETVYGLGADAFNPGACSKIFIAKNRPADN 62

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PLI H+S++ M+ + A +D       +  WP PLTL+L    +  +  + +A L T C R
Sbjct: 63  PLIVHISNMKMLDQVAYIDDGLRKKMENIWPSPLTLLLKKKES--VPDIVSAGLDTVCVR 120

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
            P      +LIE  G P+A PSAN S + SI + +  +   +   +  IID G  + G+E
Sbjct: 121 FPDNKIALELIEASG-PIAAPSANISTRPSIVDSETAV-EELDGRVDAIIDAGRVRYGVE 178

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPR 233
           STI++   E   R+LR G   +E ++  I       L    +++    +PG+   HYAP 
Sbjct: 179 STILDCTAE-PYRLLRAGAFSVEDIESIIGKIYVDPLAKGYNQSDVALTPGLKYRHYAPS 237

Query: 234 SQVRLRAIHVNPREALI-----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
            ++ L       ++ +       F  +  K  E      ++     + E A NLF   + 
Sbjct: 238 KKLFLIENEEEFKKFISSEISKDFLVLCSKENEKYASGKSIVLGSDIYEIAHNLFYDFRY 297

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            D+SG         P  G+G+A+ NR+ +A+
Sbjct: 298 LDNSGKLYGVIQGFPESGIGLAVMNRIRKAS 328


>gi|90420143|ref|ZP_01228051.1| Sua5/YciO/YrdC/YwlC family protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335477|gb|EAS49227.1| Sua5/YciO/YrdC/YwlC family protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 322

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 135/302 (44%), Positives = 182/302 (60%), Gaps = 3/302 (0%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  + IPTETVYGLA D+ +  A+ R++E K RP  NPLICHV D++M    A + P++ 
Sbjct: 24  GELVGIPTETVYGLAADATDGAAVARIFEAKGRPRFNPLICHVPDLAMAATLAEIGPVAA 83

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA+ FWPGPLT+VL L   + +HPL+TA L T   R P G   +L    G PLA PSAN
Sbjct: 84  MLAEAFWPGPLTMVLPLKEGSPVHPLATAGLATVAIRAPQGIAGRLAAALGRPLAAPSAN 143

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG++S TN   +L   +   +PLI+DGG  ++G+ESTIV +    ++ +LR GG+    
Sbjct: 144 PSGRVSPTNAGQVLR-GLGGRLPLILDGGPCEVGVESTIV-LPEADRLVLLRAGGVGRAE 201

Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           L RA  + +     + +   +PG L SHYAP  +VRL A  V P E LI FG  P+   +
Sbjct: 202 LARATGLPVVDPAGD-AAINAPGQLTSHYAPSGRVRLDATDVAPGEYLIAFGPAPVAGQD 260

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            A   +NLS +G L+EAA  LF  +   D    ++IA + IP  GLG AIN+RL RAAAP
Sbjct: 261 RAAAIVNLSPSGDLREAAAGLFAALAGFDAPEITAIAVAPIPQSGLGEAINDRLRRAAAP 320

Query: 322 RN 323
           R 
Sbjct: 321 RG 322


>gi|269798157|ref|YP_003312057.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula DSM 2008]
 gi|269094786|gb|ACZ24777.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula DSM 2008]
          Length = 343

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 98/340 (28%), Positives = 161/340 (47%), Gaps = 25/340 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++      +      L  G  ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI
Sbjct: 4   KIITNPSEQDIDTLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYTAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV +   +K     V   +  L   FWPGPLT+ L    +  +   +T  L     R P
Sbjct: 64  LHVPNSESIKPLVTEVSNTAQLLMDTFWPGPLTITLP--KSDLVPDRATGGLPRVALRCP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L+E  G P+A PSAN SG+ S T  + +    +   I  I+D G   IG+EST
Sbjct: 122 DHELCRALLERAGVPIAAPSANISGRPSPTTAQDVY-HDMKDRISYILDAGSCTIGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
           +V V  + KV ILRPGG+    L+  +S  +EY    V+ T+ P++PGM  +HYAP + +
Sbjct: 181 VVEVH-DDKVIILRPGGITKAQLEDVVST-VEYDTALVNATTKPKAPGMKYTHYAPDAPM 238

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---LNLSKTG------------KLKEAAFN 281
            +         +  +  +  ++     ++S    NL K                     +
Sbjct: 239 TVVVGSPEDVASTFKELSAEVEGPIGCLVSHETYNLIKEDTRFICHCFGHHSDALSLGHD 298

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  +   +++  + I    + + G G+AI NR+E+A++ 
Sbjct: 299 FYKSLLHFNENHVTLILAEGVDDDGFGVAIMNRMEKASSH 338


>gi|312880381|ref|ZP_07740181.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260]
 gi|310783672|gb|EFQ24070.1| translation factor SUA5 [Aminomonas paucivorans DSM 12260]
          Length = 338

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 112/328 (34%), Positives = 160/328 (48%), Gaps = 13/328 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +   + S  L +A   L  G  +A PTETVYGL  D+ NP A+  ++  K RP  NPLI 
Sbjct: 8   VTPSSRSRHLEEAVRVLLGGGLVAFPTETVYGLGADATNPRAVGGIFAAKGRPGDNPLIV 67

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           HV+ +   +   + D  +  LA  FWPGPLTLV++  +   I     A L T   R+P  
Sbjct: 68  HVASLEEAQALGAFDDRARALAARFWPGPLTLVVE--ADPRIPEEVRAGLPTVAIRMPRH 125

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + LI   G P+A PSANRSG+ S T+   +    +   IPLI+DGG +++G+EST+V
Sbjct: 126 PLAQDLIRLAGVPVAAPSANRSGRPSPTDAASV-REDLDGRIPLILDGGPAEVGVESTVV 184

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           +V  EK V +LRPGG+  E L+R     L Y   E    +SPG    HYAP   + L   
Sbjct: 185 DVTGEK-VVLLRPGGISSEDLERVCG-PLGYPQGEDLLRRSPGTRHRHYAPGVPLWLWDG 242

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKL-----KEAAFNLFNYMKIADDSGASS 296
              P E  I      +      ++    +   +L     +E A  LF  ++  +  GA  
Sbjct: 243 GDVPEEIRI-LEREGVPWGYVGVLPPPANPAWELRGGTFEEYAALLFRALRRLEQQGARG 301

Query: 297 IAFSSIPNH-GLGIAINNRLERAAAPRN 323
           I         G+  A+ +RL RA+  R 
Sbjct: 302 ILAEWPRGKAGIARALRDRLSRASGGRE 329


>gi|319399598|gb|EFV87853.1| SUA5 domain protein [Staphylococcus epidermidis FRI909]
          Length = 347

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 149/323 (46%), Gaps = 15/323 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  +    G  +AIPTETVYGL  ++RN  A+  +Y  K RP+ NPLI H+  I  + 
Sbjct: 21  IDEIKQTFLDGGLVAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLD 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                +D     L   FWPGP++ +L L     +    T  L++   R+P     + L++
Sbjct: 81  DFVEHIDDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T  +H+    +  ++  I++G   + GLEST+++   +   
Sbjct: 140 IVDEPIAAPSANISGRPSPTTFEHVNRD-LNGKVNGIVNGDQCEEGLESTVIDCT-QFPF 197

Query: 190 RILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRL-----RAIHV 243
           RI RPG +  + ++  +   +   + +E   P +PGM   HY+P + + +     + I  
Sbjct: 198 RIARPGSITQDMIESRLPHSINRQIYEENEKPIAPGMKYKHYSPETPLTIVKDLNKKIAN 257

Query: 244 NPREALIRFGNVPIKN---IENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF 299
           + + + + F     +     EN+I           K A  NL+  +   D          
Sbjct: 258 DDKWSKVAFVFPQSQKSLIPENSIFISLCENKEDFKSAGHNLYEILHELDQNEEIEEAYI 317

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
               ++    AI NR+ +AA+ +
Sbjct: 318 YGFEDNHHTEAIMNRMLKAASYK 340


>gi|182413416|ref|YP_001818482.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1]
 gi|177840630|gb|ACB74882.1| Sua5/YciO/YrdC/YwlC family protein [Opitutus terrae PB90-1]
          Length = 331

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/319 (33%), Positives = 166/319 (52%), Gaps = 10/319 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +    L  G  +A+PTETVYGLA ++ +  A R+++  K RPA +PLI H+ D +
Sbjct: 14  PRNLARLARMLRDGELVAVPTETVYGLAANALDARACRKIFRAKGRPANDPLIVHIHDRA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A  +  +  LA+ FWPGPLT+VL   S   +  + ++ L +   R+P     ++L
Sbjct: 74  QLDLLAETNSAAERLARAFWPGPLTMVLPRRSI--VPAVVSSGLPSVAVRMPAHPLFRQL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+A PSAN  G IS T+  H+  + + + IP I+DGG   IG+ESTIV+++  +
Sbjct: 132 LRRAGMPVAAPSANPFGYISPTSAAHV-RAGLGRRIPAILDGGECPIGVESTIVDLRDPR 190

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             ++LRPG +    L+  + V +      T+   P SPG+L  HY+PR+  +L       
Sbjct: 191 HPQLLRPGAVSRRELESVLGVRVRMPTRRTAPHAPISPGLLSRHYSPRTPSQLHERFSAR 250

Query: 246 REALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                R     I     A +S      LS+ G L+EAA  LF+ +++ D      + F  
Sbjct: 251 EVGDSRVDEAWIFVARPAGVSGENIFWLSERGSLREAARRLFHTLRLVDAQRFKRLHFER 310

Query: 302 IPNHGLGIAINNRLERAAA 320
               GL  AIN+RL RAA 
Sbjct: 311 ARGGGLADAINDRLARAAG 329


>gi|331251224|ref|XP_003338212.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309317202|gb|EFP93793.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 444

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 71/382 (18%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++ A + + +   +A PTETVYGL   + + TA+ ++++ K RP+ NPLI HVS ++
Sbjct: 52  ATGIQAAAKVIQSEDLVAFPTETVYGLGASALSSTAVSKIFKAKGRPSDNPLIVHVSSLN 111

Query: 69  MVKKHA----SVDPLSLHLAKLFWPGPLTLVL----DLLSTTDIHPLSTANLKTACFRVP 120
           ++K       +       L + FWPGPLTL++     +     I  L T  L T   R+P
Sbjct: 112 LLKTFVPPDWNFPATYQALIERFWPGPLTLLVPTTSPVQPNCPISNLVTCGLPTVAVRMP 171

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               ++ LI   G P+A PSAN SG+ S T  +H+    +  +IP+IIDGG  ++G+EST
Sbjct: 172 AHSISRALIAESGVPIAAPSANLSGRPSPTTAQHVERD-MKTKIPMIIDGGACQVGVEST 230

Query: 180 IVN-VQCEKKVRILRPGGLEIETLKRAI---------------SVELEYCVDE--TSTPQ 221
           +V+ +  + +VRILR GGL +E ++  +                V  +   D+   + P 
Sbjct: 231 VVDGLNPDGRVRILRLGGLSVEDIEACLIEAGLNLSDGKPILAGVYNQDYRDKELEAKPT 290

Query: 222 SPGMLKSHYAPRSQVRLRAIHVNPR--------------------------EALIRFGNV 255
           +PGM   HYAP ++V +    + P                              +R G +
Sbjct: 291 TPGMKYKHYAPHAKVVILDPVLVPNSDSDQQESLRGVDELVSGICSEETDSSKGLRIGLM 350

Query: 256 PI----------------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-GASSIA 298
            I                K   +     NL    +   +A  LF  ++  D+      I 
Sbjct: 351 LIDDSPLHKSFIACAQSEKYGHHQFCYSNLGLESQPAISAQRLFAALRYLDEELRVDIIY 410

Query: 299 FSSIPNHGLGIAINNRLERAAA 320
              +   GLG  +  RL +A+ 
Sbjct: 411 VERLSEVGLGATVMERLRKASG 432


>gi|255941190|ref|XP_002561364.1| Pc16g10540 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585987|emb|CAP93724.1| Pc16g10540 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 507

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/396 (25%), Positives = 170/396 (42%), Gaps = 82/396 (20%)

Query: 5   SITDSNALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
              +S A+ +A + L +    +A PTETVYGL  D+   ++++ +Y  K+RP+ NPLI H
Sbjct: 109 KTPESQAIEEAVKLLRSSDIPVAFPTETVYGLGADATRSSSVQGIYRAKQRPSDNPLIVH 168

Query: 64  VSDISMVKKHASVDP----------------LSLHLAKLFWPGPLTLVLDLLSTTDIHPL 107
           V  + M+++  +  P                +   L   FWPGPLT++L   S + + P 
Sbjct: 169 VDSLDMLERLLNPTPQGSPSSTKTPPIALPSIYKPLIDRFWPGPLTIILPNPSGSILAPE 228

Query: 108 STANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            T++L T   R+P     + LI     PLA PSAN S + S T  +H+    +   I +I
Sbjct: 229 VTSSLTTFGVRMPSSPLARLLIHAADRPLAAPSANASTKPSPTTAQHVY-HDLKDRIDMI 287

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTP 220
           +DGG S +G+EST+V+  C+  V +LRPGG+ I+ +++    E       +  +D    P
Sbjct: 288 LDGGASGVGVESTVVDGLCDPPV-VLRPGGIGIDEIRKCEGWENVTVGYKDGTLDVKEVP 346

Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREALI--------------RFGNVPIKNIENAI-- 264
           ++PGM   HY+P+++V L     NP   +               + G +  +N E  +  
Sbjct: 347 RAPGMKYRHYSPKARVVLFEPTSNPAGVMKHVLKDLKDTAIGAHKIGVIRTRNWELGLGL 406

Query: 265 --------------------------------------ISLNLSKTGKLKEAAFNLFNYM 286
                                                 ++ +          A  LF  +
Sbjct: 407 ASKDDIARTMNPVPSPIGDVVGFPVPVLQDGNSSSCTKVAYDYHLGSDAVSIAHGLFAAL 466

Query: 287 KIADDSGASSIAFSSIPNHG--LGIAINNRLERAAA 320
           +  D+     I    + +    L  A+ NRL +AA 
Sbjct: 467 RGLDELDVDVIYVEGVSDREGDLAAAVMNRLRKAAG 502


>gi|268610025|ref|ZP_06143752.1| Sua5/YciO/YrdC/YwlC family protein [Ruminococcus flavefaciens FD-1]
          Length = 337

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/334 (32%), Positives = 170/334 (50%), Gaps = 17/334 (5%)

Query: 1   MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M  + ++DS A L KA + +  G  + IPTETVYGL  D+ N  A+R ++  K RPA NP
Sbjct: 1   MDTVLLSDSEADLLKAAKLIKDGNIVGIPTETVYGLGADASNEAAVRNIFAAKGRPADNP 60

Query: 60  LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI H++D S   K+ +S+  L+  LA+ F PGPLT+VL       I  +++  L T   R
Sbjct: 61  LIVHLADFSHAVKYTSSIPQLAYRLAERFCPGPLTMVLP--KNDSIPMVTSGGLDTVGIR 118

Query: 119 VPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP      ++IE  G P+A PSAN SG  S T+  H+++  +  ++  I+DGG S+ G+E
Sbjct: 119 VPSHPVMHRIIELSGCPIAAPSANTSGYPSPTSAAHVMND-MNGKVAAIVDGGESEFGVE 177

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETSTPQSPGMLKSHYAP 232
           ST++ ++ E  VRILRPG +  E L        I   +   +       SPGM   HY+P
Sbjct: 178 STVIAIEGESTVRILRPGCITREMLLELCDEVIIDHAILNELAAGEKAASPGMKYKHYSP 237

Query: 233 RSQVRLRAIHVNPREALIRFGN------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYM 286
           ++ + +    ++     +   +      +             ++  G   + A  +F  +
Sbjct: 238 KADIVMVEGDLDSFIDYVSKHDPENTFSLIYDEDGEKFPYRYMTYGGTSLQQAHLIFAKL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  D+ GA  +   +    G+G+A+ NRL RAA 
Sbjct: 298 RELDEIGAEKVFVRAPSKDGVGLAVYNRLIRAAG 331


>gi|194335648|ref|YP_002017442.1| Sua5/YciO/YrdC/YwlC family protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308125|gb|ACF42825.1| Sua5/YciO/YrdC/YwlC family protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 317

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 107/324 (33%), Positives = 162/324 (50%), Gaps = 13/324 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TDS    +A   L++G  +A PTETVYGL     +P AI +L+  K RP+ NPL
Sbjct: 1   MQTI-LTDSP--EEAAAILNSGGVVAFPTETVYGLGAGICHPEAILQLFRAKGRPSDNPL 57

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+  I  + + A  +   +  L + F+PGPLTLVL   S+  +    TA L+T   R 
Sbjct: 58  IVHLGSIDQLDEVAEALHADARALIEHFFPGPLTLVLQKKSS--VPFSVTAGLETVGVRC 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++ +   G P+A PSANRSG  S T+ + ++   +   I  ++ G  S IGLES
Sbjct: 116 PSNPVAQEFLRLCGCPVAAPSANRSGLPSATSWEAVM-EDLEGRIECVLRGRPSTIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET--STPQSPGMLKSHYAPRSQV 236
           TIV     K + +LR G + +E L+  +       V      +P+ PG+   HYAP++ +
Sbjct: 175 TIVECSGAKPL-LLRAGAITLEQLREVVPEITVNAVTNKPEESPKCPGLKYPHYAPKASI 233

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            L +   +P        ++ +      +    +  T  L+E    LF + ++ D  G   
Sbjct: 234 ILWSGEKSPVADSPSSASIGLSAPPEGVTLCKVCST--LEEYGRELFGFFRLCDAEGIGV 291

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I      N GLG AI +RL RAAA
Sbjct: 292 IYCELPSNEGLGRAIRDRLLRAAA 315


>gi|37678973|ref|NP_933582.1| putative translation factor [Vibrio vulnificus YJ016]
 gi|37197715|dbj|BAC93553.1| putative translation factor [Vibrio vulnificus YJ016]
          Length = 328

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/317 (30%), Positives = 156/317 (49%), Gaps = 8/317 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  +   + +A E L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI H
Sbjct: 14  LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 73

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +  +  +   A  +   +  LA+ +WPGP+TL+L       + P+ T  L+T   R+P  
Sbjct: 74  IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLKKAPH--VTPVVTGGLETIGIRMPAH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L+++ G  +A PSAN   ++S T+ KH+++S +  +I  ++DGG    GLESTIV
Sbjct: 132 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVMNS-LGGKIAAVLDGGDCAHGLESTIV 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           ++  EK  RILR G +    L   +  E+   V        PG + SHY P ++VRL   
Sbjct: 191 DLT-EKPFRILRTGPVTAAQLSATLGEEVSSPVSHNVAV--PGNVTSHYQPNTRVRLVQA 247

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                    +   +                   + E + +L+  +  AD  G   I    
Sbjct: 248 SDLALVGDKKIAYLHYTPFTAQENVEGRQMPSSVAEYSHDLYRTLDEADKWGCEEIWVER 307

Query: 302 IPNHGLGIAINNRLERA 318
            P      A+++RL RA
Sbjct: 308 PPVTESWFAVHDRLNRA 324


>gi|294011241|ref|YP_003544701.1| putative translation factor [Sphingobium japonicum UT26S]
 gi|292674571|dbj|BAI96089.1| putative translation factor [Sphingobium japonicum UT26S]
          Length = 318

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 186/313 (59%), Gaps = 12/313 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S ALR+A   + AG P+A+PTETVYGLA D+ +  A+  +Y  K RP+ NPLI HV+D  
Sbjct: 17  SEALREAALLIRAGEPVAVPTETVYGLAADATDSNAVAAIYAAKGRPSFNPLIVHVADQE 76

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
           M  + A   P++  LA+ FWPG LTLVL   + + + PL  A L T   R+P     + L
Sbjct: 77  MAGRLAEFSPVADRLAERFWPGALTLVLPARADSGLSPLVMAGLPTVALRLPAHPAMRAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSANRSG IS T  +H++ +S+  +I +I+D G +  GLESTIV  + + 
Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVM-ASLNGKIRMILDEGPTSEGLESTIVAPETD- 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            +R+LRPG +    L+ A  + +    D T   ++PG L+SHYAP   VRL A+     E
Sbjct: 195 CIRLLRPGPVTAAMLEEAGMLPVVTGADNT-KIEAPGQLESHYAPSKPVRLNALKAEKNE 253

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            LI FG +P          +NLS    L+EAA +LF  + + D S A  IA + IPN G+
Sbjct: 254 YLIGFGLMPCH--------VNLSPDADLREAAAHLFAALHMGDASAAERIAVAPIPNEGI 305

Query: 308 GIAINNRLERAAA 320
           G+AIN+RL RAAA
Sbjct: 306 GVAINDRLRRAAA 318


>gi|254420853|ref|ZP_05034577.1| Sua5/YciO/YrdC/YwlC family protein, putative [Brevundimonas sp.
           BAL3]
 gi|196187030|gb|EDX82006.1| Sua5/YciO/YrdC/YwlC family protein, putative [Brevundimonas sp.
           BAL3]
          Length = 309

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/309 (36%), Positives = 161/309 (52%), Gaps = 13/309 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A   L  G  I +PTETVYGL  D+ N  A+  +++ K RP  NPLI HV+D    + 
Sbjct: 10  DQAATALRRGELILLPTETVYGLGADAGNAEAVAAIFQAKGRPRFNPLISHVADAVAAEA 69

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
               D  +  LA+ FWPGPLTLV  +     +  L+ A L +   RVP     + ++  +
Sbjct: 70  VGVFDVSARALAEAFWPGPLTLVTPVRDGGRVCDLARAGLDSVAIRVPGHAAARAVLSAF 129

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+  PSANRSG+ S TN    +  +    +   +DGG   +GLEST+V+V    +V +
Sbjct: 130 GGPVVAPSANRSGRPSPTNFADAVEET-GFAVTAAVDGGPCAVGLESTVVSVLG-GRVSL 187

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           LRPG +    ++  +        D     +SPG L +HYAP + VR+  +     E L+ 
Sbjct: 188 LRPGAVTRAEIEAVVG----PLADGGDGHRSPGRLAAHYAPDAPVRIDVVAPRDGEILLG 243

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAI 311
           FG              +LS +G L+EAA NLF   + AD +  + IA S IP+ GLG AI
Sbjct: 244 FGPGA------GDPRWSLSVSGDLREAAANLFRLFREADRTHPAGIAVSPIPSQGLGEAI 297

Query: 312 NNRLERAAA 320
           N+RL RAA 
Sbjct: 298 NDRLRRAAG 306


>gi|242241522|ref|ZP_04795967.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           W23144]
 gi|242235065|gb|EES37376.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           W23144]
          Length = 347

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 146/323 (45%), Gaps = 15/323 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  +    G  +AIPTETVYGL  ++RN  A+  +Y  K RP+ NPLI H+  I  + 
Sbjct: 21  IDEIKQTFLDGGLVAIPTETVYGLGANARNEEAVENIYVAKGRPSDNPLIVHIHSIEQLD 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                +D     L   FWPGP++ +L L     +    T  L++   R+P     + L++
Sbjct: 81  DFVEHIDDKVKVLMDEFWPGPISFILPLKQGY-LCSKVTGGLESIAVRMPSHKIGRALLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T  +H+    +  ++  I++G   + GLEST+++   +   
Sbjct: 140 IVDEPIAAPSANISGRPSPTTFEHVNRD-LNGKVNGIVNGDQCEEGLESTVIDCT-QFPF 197

Query: 190 RILRPGGLEIETLKRAISVELEYCV-DETSTPQSPGMLKSHYAPRSQVRLR-------AI 241
           RI RPG +  + ++  +   +   + +E   P +PGM   HY+P + + +        A 
Sbjct: 198 RIARPGSITQDMIETKLPHSINRQIYEENEKPIAPGMKYKHYSPETPLTIVKDLNKKIAN 257

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADD-SGASSIAF 299
                +    F       I    I ++L +     K A  NL+  +   D          
Sbjct: 258 DDKWSKVAFVFPQSQRSLIPENSIFISLCENKEDFKSAGHNLYEILHELDQNEEIEEAYI 317

Query: 300 SSIPNHGLGIAINNRLERAAAPR 322
               ++    AI NR+ +AA+ +
Sbjct: 318 YGFEDNHHTEAIMNRMLKAASYK 340


>gi|145592582|ref|YP_001156879.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440]
 gi|145301919|gb|ABP52501.1| translation factor SUA5 [Salinispora tropica CNB-440]
          Length = 323

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/316 (35%), Positives = 179/316 (56%), Gaps = 9/316 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L AG  +A+PTETVYGL  ++ +  A+ R++  K RP+ +PLI H+++ +
Sbjct: 10  DRGVAEAAAVLRAGGLVALPTETVYGLGANALDAPAVARIFAAKARPSFDPLISHLAEAA 69

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            ++K   +V      LA+ FWPGPLTL++D  +   I P+ T+ L+T   RVP     + 
Sbjct: 70  ELEKLVGTVPAAVAELAERFWPGPLTLIVDRPAV--IPPIVTSGLETMAVRVPDHAATRG 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+ + +
Sbjct: 128 LIAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGAAVDVVLDGGPTRCGIESTIVDARGD 186

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           + V +LR G L +E L+ A+   +      +  P +PG L +HYAPR+++RL        
Sbjct: 187 RPV-VLRLGALPVELLQEAVG-PVLVRAGSSGQPVAPGTLAAHYAPRTRLRLATDTDPAD 244

Query: 247 EALIRFGNVPIKNIENAIISL--NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             + R G +  +       +    LS  G L EAA  LF+ +   D +G   I   S+P 
Sbjct: 245 GGVSRQGFLGFRGCPAGDWAAVEVLSSKGDLTEAAARLFDALHRLDGAGVDEILVESVPE 304

Query: 305 HGLGIAINNRLERAAA 320
            G+G AIN+RL RAAA
Sbjct: 305 VGVGRAINDRLRRAAA 320


>gi|223043990|ref|ZP_03614031.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus capitis SK14]
 gi|222442705|gb|EEE48809.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus capitis SK14]
          Length = 347

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 92/322 (28%), Positives = 151/322 (46%), Gaps = 15/322 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  E L  G  +AIPTETVYGL  ++RN  A+R++YE K RP+ NPLI H+     ++
Sbjct: 21  LNEIKETLLNGGLVAIPTETVYGLGANARNEHAVRKIYEAKGRPSDNPLIVHIHQREQLE 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +    +D     L   FWPGP++ +L  L T  +    T  L +   R+P     + L++
Sbjct: 81  EFVDGIDERVSKLMDAFWPGPISFILP-LKTGYLCEKVTGGLNSIAVRMPSHKIGRALLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T   H+    +  ++  I++G  S+ GLEST+++   +   
Sbjct: 140 YIDEPIAAPSANLSGRPSPTKFDHVF-QDLNGKVDGIVNGDQSEEGLESTVLDCT-QYPF 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA------IH 242
           RI RPG +    +++ +   ++     E   P +PGM   HY+P + + +         +
Sbjct: 198 RIARPGSITTSMIEQVLPGSIQKANYFEKDKPIAPGMKYKHYSPDTPLTIVENLTHKIDN 257

Query: 243 VNPREALIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSIAF 299
                 ++    + +K +  ENA           +K A  NL++ +   D S        
Sbjct: 258 NEKWNDVVFIFPISMKYLLPENAQFIPLCDDEQDIKGANHNLYSVLHSIDSSNDIKHAYI 317

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
            S        AI NR+ +AA  
Sbjct: 318 YSFEKKDQSEAIMNRMLKAAGN 339


>gi|320161912|ref|YP_004175137.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1]
 gi|319995766|dbj|BAJ64537.1| hypothetical protein ANT_25110 [Anaerolinea thermophila UNI-1]
          Length = 360

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 110/336 (32%), Positives = 166/336 (49%), Gaps = 29/336 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +AL +A E L +G  +A PTETVYGL  ++ +  A++R++E K RPA +PLI H+     
Sbjct: 19  DALLEATECLRSGGLVAFPTETVYGLGGNALDGRAVQRIFEAKGRPANDPLIVHLPSADA 78

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +       P +   LA+ FWPGPLTL+L       +    TA L T   RVP     + L
Sbjct: 79  LPMVVKTIPTIVSTLAEHFWPGPLTLILPRGDNVPLS--VTAGLDTVAVRVPSHPVAQAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G  +A PSANR G +S T+ +H+L   +   I +++DGG + IG+EST++++    
Sbjct: 137 LQMSGLAIAAPSANRFGGVSPTSAEHVLRD-LEGRIEMVLDGGSTPIGVESTVLDIT-AP 194

Query: 188 KVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRS-QVRLRAI--- 241
             RILRPGG+  E L+  +     LE    +     SPG+L  HYAP   ++ L  I   
Sbjct: 195 IPRILRPGGISREALEAVLGRVELLERKASQEEAQASPGLLDKHYAPHHARLILLEIPQT 254

Query: 242 ----------HVNPREALIRFGNVPIKNIEN-------AIISLNLSKTGKLKEAAFNLFN 284
                         ++  +R G +              A+  L L     L   A NL+ 
Sbjct: 255 QELWEEFTHQVAQAKKEGLRVGALVADEDLTYLDAHFPALARLALGSLSDLAAVARNLYA 314

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            M+  D++G   +        GLG+AI +RL RAA+
Sbjct: 315 GMRAMDEAGIDILLVRDFGTGGLGLAIRDRLYRAAS 350


>gi|320170442|gb|EFW47341.1| Sua5/YciO/YrdC/YwlC family protein [Capsaspora owczarzaki ATCC
           30864]
          Length = 331

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 93/324 (28%), Positives = 146/324 (45%), Gaps = 37/324 (11%)

Query: 31  TVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA--SVDPLSLHLAKLFW 88
           TVYGLA ++ +  A+ +++  K RPA NPLI HV+D S +++     +      L   FW
Sbjct: 4   TVYGLAANAFSDDAVAKIFRAKNRPADNPLIVHVADESQLREVVEGEISQREQQLIAAFW 63

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGHPLAIPSANRSGQIS 147
           PGPLTL+L       +  L TA L T   R+P       +I   G PLA PSAN SG+ S
Sbjct: 64  PGPLTLILPR--KISVSRLVTAGLTTVGVRMPSHPVAKAIIARCGKPLAAPSANISGRPS 121

Query: 148 ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            T   H++   + K +  I+DGG + +G+EST+++   E  + ILRPGG+  E ++  I 
Sbjct: 122 PTCGAHVIGDMMGK-VAGIVDGGATGVGVESTVIDCSPEIPI-ILRPGGITKEEIETIIG 179

Query: 208 V---------------ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI----------- 241
                             +        P++PGM  +HYAP++ V +              
Sbjct: 180 PVTYAQELHSNERPESAKDVSALSGHVPRAPGMKYAHYAPKAPVTVVEGSPQFLQSLVDA 239

Query: 242 --HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD--DSGASSI 297
               +P   +        +    A + +       +   A +L++ ++  D        I
Sbjct: 240 HHQQHPTSKIGVLATDESRGQYRADVVVTCGARSDVASIARSLYDALRQFDIATPSVDCI 299

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
              S    GLG A+ NRL +AA+ 
Sbjct: 300 YSESFSTDGLGAAVMNRLLKAASH 323


>gi|169832288|ref|YP_001718270.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169639132|gb|ACA60638.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 358

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 105/331 (31%), Positives = 152/331 (45%), Gaps = 21/331 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +  A   +  G  +A PTETVYGL  ++ +  A++R++ +K RP  NPLI HV + 
Sbjct: 24  DRRTITAAAALIREGGLVAFPTETVYGLGANALDRQAVKRVFAVKGRPDDNPLIVHVGER 83

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + +      + P +  L  LFWPGPLTLVL    +  + P  TA L     R+P      
Sbjct: 84  AEISGLVRDLPPSAEKLIGLFWPGPLTLVLPR--SDRVSPAVTAGLDKVAVRMPAHPVAL 141

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSAN SG+ S T   H+L   +   I  ++DGG   +G+EST++++  
Sbjct: 142 ALIREAGVPVAAPSANTSGRPSPTTAAHVL-EDLDGRIEAVLDGGPVPVGVESTVLDLTV 200

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
              V ILRPGG+    L   +   + +       PQ+PGM   HYAPR+ + L       
Sbjct: 201 SPPV-ILRPGGVTGRQLAAVLGAVVHHPEAAPGRPQAPGMKYRHYAPRTPLVLVEGPPAA 259

Query: 246 REALIR---------------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
             A IR                              +   K+     AA  L++ ++  D
Sbjct: 260 VTARIRELAAAARASGERVAVLARTDTAAYYPDGPVVPCGKSNDPGSAAAALYSALRECD 319

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             GA  I    +   GLG A+ NRL +AAA 
Sbjct: 320 ALGADLILAEGLAAEGLGRAVMNRLRKAAAK 350


>gi|313893573|ref|ZP_07827142.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441844|gb|EFR60267.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 343

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 25/340 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++      +      L  G  ++IPTETVYGL  +  +P A+ ++Y  K RP+ NPLI
Sbjct: 4   KIITNPSEQDIDMLARALRNGELVSIPTETVYGLGANGLDPEAMDKIYAAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV +   +K     V   +  L   FWPGPLT+ L    +  +   +T  L     R P
Sbjct: 64  LHVPNSESIKPLVTEVSSTAQALMDSFWPGPLTITLP--KSDLVPDRATGGLPRVALRCP 121

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L++  G P+A PSAN SG+ S T  + + +  +   I  I+D G   IG+EST
Sbjct: 122 DHDGCRVLLQRAGVPIAAPSANISGRPSPTTAQDVYND-MNGRISYILDAGPCTIGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
           +V V  + KV ILRPGG+    L+  +S  +EY    V   + P++PGM  +HYAP + +
Sbjct: 181 VVEVH-DDKVIILRPGGITKAQLETVVST-VEYDTALVGAETKPKAPGMKYTHYAPDAPM 238

Query: 237 ---------------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
                           L      P   L+      +   ++  +       G       +
Sbjct: 239 TVVVGTPESVANTFNELSKGIEGPIGCLVSHETYELIKDDSRFMCHCFGHHGDALALGHD 298

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  +   +++  + I    + + G G+AI NR+E+A+  
Sbjct: 299 FYKSLLHFNENHVTLILAEGVNDDGFGVAIMNRMEKASGH 338


>gi|242371607|ref|ZP_04817181.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242350674|gb|EES42275.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 347

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 150/322 (46%), Gaps = 15/322 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    + +  G  +AIPTETVYGL  ++++  A++++YE K RP+ NPLI HV     + 
Sbjct: 21  INDIKDTVIKGGLVAIPTETVYGLGANAKDEVAVKKIYEAKGRPSDNPLIVHVHHRKQLD 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           K    +D     L + FWPGP++ +L L S   +    T  L +   R+P     + L++
Sbjct: 81  KFVEHIDERVSKLMEAFWPGPISFILPLKSGY-LCETVTGGLNSIAVRMPSHKIGRALLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T   H+    +  +I  I++G  S+ GLEST+++   +   
Sbjct: 140 VIDEPIAAPSANLSGRPSPTTFDHVF-HDLNHKIDGIVNGDQSEEGLESTVLDCT-QFPF 197

Query: 190 RILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRL-----RAIHV 243
           RI RPG +  E +++ +   + +    E   P +PGM   HY+P + + +       I  
Sbjct: 198 RIARPGSVTKEMIEKVLPESVQDIHFTENEKPIAPGMKYKHYSPDTPLTIIENLNHKIDN 257

Query: 244 NPREALIRFGNVPIKN--IENAIISLNLSKTG-KLKEAAFNLFNYMKIADD-SGASSIAF 299
           N +     F         +  +   ++L K    +K A  NL++ +   D  S       
Sbjct: 258 NEKWKDTAFIFPESMKSLLPESAQFISLCKNAQDIKTANHNLYSILHSIDRSSDIQRAFI 317

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
                     AI NR+ +AA  
Sbjct: 318 FGFEKKDQSEAIMNRMLKAAGN 339


>gi|314934185|ref|ZP_07841546.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus caprae C87]
 gi|313653090|gb|EFS16851.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus caprae C87]
          Length = 347

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 92/322 (28%), Positives = 151/322 (46%), Gaps = 15/322 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  E L  G  +AIPTETVYGL  ++RN  A+R++YE K RP+ NPLI H+     ++
Sbjct: 21  LNEIKETLLNGGLVAIPTETVYGLGANARNEHAVRKIYEAKGRPSDNPLIVHIHQREQLE 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +    +D     L   FWPGP++ +L  L T  +    T  L +   R+P     + L++
Sbjct: 81  EFVDGIDERVSKLMDAFWPGPISFILP-LKTGYLCEKVTGGLNSIAVRMPSHKIGRALLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T   H+    +  ++  I++G  S+ GLEST+++   +   
Sbjct: 140 YIDEPIAAPSANLSGRPSPTKFDHVF-QDLNGKVDGIVNGDQSEEGLESTVLDCT-QYPF 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRA------IH 242
           RI RPG +    +++ +   ++     E   P +PGM   HY+P + + +         +
Sbjct: 198 RIARPGSITTSMIEQVLPGSIQKANYFEKDKPIAPGMKYKHYSPDTPLTIVENLTHKIDN 257

Query: 243 VNPREALIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSIAF 299
                 ++    + +K +  ENA           +K A  NL++ +   D S        
Sbjct: 258 NEKWNDVVFIFPISMKYLLPENAQFIPLCDDEQDIKGANHNLYSVLHSIDSSNDIKHAYI 317

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
            S        AI NR+ +AA  
Sbjct: 318 YSFEKKDQSEAIMNRMLKAAGN 339


>gi|86135055|ref|ZP_01053637.1| Putative translation factor (SUA5) [Polaribacter sp. MED152]
 gi|85821918|gb|EAQ43065.1| Putative translation factor (SUA5) [Polaribacter sp. MED152]
          Length = 318

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 111/326 (34%), Positives = 169/326 (51%), Gaps = 16/326 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+S      ++KA   L+    +AIPTETVYGLA +  +  AI+ ++E K+RP  NPL
Sbjct: 1   MSIIS----KDIQKAISILENEELVAIPTETVYGLAGNIFSEKAIKSIFETKQRPLFNPL 56

Query: 61  ICHVSDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HVS I  + K  A +   +  LA+ FWPG +TLVL      +I  L TA   T   R+
Sbjct: 57  IVHVSGIDQLDKIVAEIPAKAKLLAEKFWPGSMTLVL--KKNPNIPDLITAGKSTVAVRI 114

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T +L+     PLA PSAN    IS T  +H+      + + +++DGG  K G+ES
Sbjct: 115 PNHKTTLELLSKLPFPLAAPSANPFNNISPTKPEHVAR-YFKESLEMVLDGGTCKNGIES 173

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TI+     + V I R G L +E ++  +   +    ++   P +PGML+ HYAP+++  L
Sbjct: 174 TIIGFNNNEPV-IYRLGALALEEIENVVG-PVSVMNEKEKNPDAPGMLQKHYAPKTKTIL 231

Query: 239 --RAIHVNPREALIRFGNVPIK-NIENAIIS--LNLSKTGKLKEAAFNLFNYMKIADDSG 293
                    +    + G +    + +N  +   + LS +  L+EAA NL++ M   D   
Sbjct: 232 TTDVKSEIEKYKTSKIGVLSFSTSFKNNAVDAEIRLSTSNNLQEAASNLYDSMHQLDHLN 291

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
              I    +P  GLG ++N+RL+RAA
Sbjct: 292 LDIIIVEKLPEFGLGKSMNDRLKRAA 317


>gi|331236260|ref|XP_003330789.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309309779|gb|EFP86370.1| SUA5 protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 423

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 102/361 (28%), Positives = 169/361 (46%), Gaps = 50/361 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++ A + + +   +A PTETVYGL   + + TA+ ++++ K RP+ NPLI HVS ++
Sbjct: 52  ATGIQAAAKVIQSEDLVAFPTETVYGLGASALSSTAVSKIFKAKGRPSDNPLIVHVSSLN 111

Query: 69  MVKKHA----SVDPLSLHLAKLFWPGPLTLVLD----LLSTTDIHPLSTANLKTACFRVP 120
           ++K       +       L + FWPGPLTL++     +     I  L T  L T   R+P
Sbjct: 112 LLKTFVPPDWNFPATYQALIERFWPGPLTLLVPTTSSVQPNCPISNLVTCGLPTVAVRMP 171

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               ++ LI   G P+A PSAN SG+ S T  +H+    +  +IP+IIDGG  ++G+EST
Sbjct: 172 AHSISRALIAESGVPIAAPSANLSGRPSPTTAQHVERD-MKTKIPMIIDGGACQVGVEST 230

Query: 180 IVN-VQCEKKVRILRPGGLEIETLKRAI---------------SVELEYCVDE--TSTPQ 221
           +V+ +  + +VRILR GGL +E ++  +                V  +   D+   + P 
Sbjct: 231 VVDGLNPDGRVRILRLGGLSVEDIEACLIEAGLNLSDGKPILAGVYNQDYRDKELEAKPT 290

Query: 222 SPGMLKSHYAPRSQVRLRAIHVNP-------------REALIRFGNVPIKNIENAIISLN 268
           +PGM   HYAP ++V +    + P              E +    +    + +   I L 
Sbjct: 291 TPGMKYKHYAPHAKVVILDPVLVPTSDSDQQESLRGVDELVSGICSEETDSSKGLRIGLM 350

Query: 269 LSKTGKLKE--------AAFNLFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAA 319
           L     L +        +A  LF  ++  D+      I    +   GLG  +  RL +A+
Sbjct: 351 LIDDSPLHQSFIAQPAISAQRLFAALRYLDEELRVDIIYVERLSEVGLGATVMERLRKAS 410

Query: 320 A 320
            
Sbjct: 411 G 411


>gi|257888291|ref|ZP_05667944.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,141,733]
 gi|257824345|gb|EEV51277.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium 1,141,733]
          Length = 311

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 20/306 (6%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGP 91
           YGL  ++  P  +++++ +K RP  NPLI HV+    VK++     P +  + K FWPGP
Sbjct: 2   YGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPETEKIVKNFWPGP 61

Query: 92  LTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150
           LTL+  +   T +  + T  L TA FR+P    T ++IE  G PL  PSAN SG+ S T 
Sbjct: 62  LTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPTT 120

Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVE 209
             H+    +  +I  IID G ++IG+EST++++        ILRPG +  E ++  I   
Sbjct: 121 ADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIESP 179

Query: 210 L---EYCVDETSTPQSPGMLKSHYAPRSQVRLR------AIHVNPREALIRFGNVPIKNI 260
           +   ++ V E  TP++PGM   HY+P ++V +             +   IR G +    I
Sbjct: 180 VAIDQHLVKENETPKAPGMKYKHYSPDTRVLMVREGDWSTAVQWAKNKKIRVGVIASPEI 239

Query: 261 ENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNR 314
            + +     ++ +     ++ AA  LF  ++  D+   G   I     P  GLG A  NR
Sbjct: 240 SDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNR 299

Query: 315 LERAAA 320
           L++AA 
Sbjct: 300 LKKAAG 305


>gi|27363877|ref|NP_759405.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
 gi|27359994|gb|AAO08932.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
          Length = 328

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 99/317 (31%), Positives = 157/317 (49%), Gaps = 8/317 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  +   + +A E L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI H
Sbjct: 14  LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 73

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +  +  +   A  +   +  LA+ +WPGP+TL+L       + P+ T  L+T   R+P  
Sbjct: 74  IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLKKAPH--VTPVVTGGLETIGIRMPAH 131

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L+++ G  +A PSAN   ++S T+ KH+++S +  +I  ++DGG    GLESTIV
Sbjct: 132 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVMNS-LGGKIAAVLDGGDCAHGLESTIV 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           ++  EK  RILR G +    L   +S E+   V        PG + SHY P ++VRL   
Sbjct: 191 DLT-EKPFRILRTGPVTAAQLSATLSEEVSSPVSHNVAV--PGNVTSHYQPNTRVRLVQA 247

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                    +   +                   + E + +L+  +  AD  G   I    
Sbjct: 248 SDLALVGDKKIAYLHYTPFTAQENVEVRQMPSSVAEYSHDLYRTLDEADKWGCEEIWVER 307

Query: 302 IPNHGLGIAINNRLERA 318
            P      A+++RL RA
Sbjct: 308 PPVTESWFAVHDRLNRA 324


>gi|295112222|emb|CBL28972.1| Sua5/YciO/YrdC/YwlC family protein [Synergistetes bacterium SGP1]
          Length = 327

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 103/329 (31%), Positives = 159/329 (48%), Gaps = 16/329 (4%)

Query: 1   MQIMSIT------DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+ + I           L +A E L +G  +A PTETVYGL  ++ NP A++ +Y  K R
Sbjct: 1   METLRIELDPWNPSGEILARAAEVLRSGGLVAFPTETVYGLGANALNPEAVKGIYRAKGR 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           P+ NPLI H+S +   +    VD  +  L + FWPGPLTLVL   +   +   +   L T
Sbjct: 61  PSDNPLILHLSRVEQAEPLVCVDERARRLMRAFWPGPLTLVL--RARDVVPMEARGGLST 118

Query: 115 ACFRVPCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           A  R+P       LI+  G PLA PSAN SG+ S T+ + +    +   I +I+DGG   
Sbjct: 119 AALRMPSHPVASALIDAVGFPLAAPSANVSGRPSPTDAETVWRD-LRGRIEMILDGGPVS 177

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR 233
           +G+EST+++V  E  + +LRPGG+  E ++  +   L    D  S+ +SPG    HYAP 
Sbjct: 178 VGIESTVIDVSEELPL-LLRPGGMPAEEIEAFLGEPLRRP-DGRSSRRSPGTRYRHYAPT 235

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIEN-AIISLNLS---KTGKLKEAAFNLFNYMKIA 289
             VR+         A +    +        A+         +   ++  A  LF+  +  
Sbjct: 236 IPVRVWHPEAPFEMAEMVGMELERWGFMGLAVPPARFGRVLRFESVENYARGLFSGFRAL 295

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERA 318
           +  G   I     P  G+G+ + +R+ RA
Sbjct: 296 EAEGLLGIVAEWPPAAGVGLGLRDRIRRA 324


>gi|189347477|ref|YP_001944006.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium limicola DSM 245]
 gi|189341624|gb|ACD91027.1| Sua5/YciO/YrdC/YwlC family protein [Chlorobium limicola DSM 245]
          Length = 319

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 110/329 (33%), Positives = 163/329 (49%), Gaps = 17/329 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ + +TDS    +A   L+ G  +A PTETVYGL     +  AI R++  K RP  NPL
Sbjct: 1   MQTV-VTDSP--EEAARCLNEGGVVAFPTETVYGLGAAICHTEAIERIFAAKGRPGDNPL 57

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++D   + K AS V   +  L   F+PGPLTLVL     + +    TA L T   R 
Sbjct: 58  IVHIADPGDLMKVASHVSSDAKKLVLHFFPGPLTLVL--KKNSSVPDSVTAGLDTVGVRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P        ++    P+A PSAN SG+ S T+   +L   +  +I  I+ G  S IGLES
Sbjct: 116 PSNSDATAFLKRCRCPVAAPSANVSGRPSSTSWDAVL-HDLDGKIDCILKGAPSDIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+   E  + +LR G + IE L+  + S+     + +   P+SPG+   HYAP +++ 
Sbjct: 175 TIVDCSGETPL-LLRTGAVTIENLREVVPSIRTADSLRQHEIPKSPGLKYPHYAPEARIV 233

Query: 238 L----RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           L      I  +  +    +  + +   E   +  +      ++E A  LF++ ++ D   
Sbjct: 234 LLGAGERIDADSEQRTSAYIGLSLPAAEQFALVKHCC---NIEEYARVLFDFFRLCDSRK 290

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            S I     P  GLG A+ +RL RAAA R
Sbjct: 291 ISFIYCELPPAEGLGRAVGDRLSRAAAGR 319


>gi|160903205|ref|YP_001568786.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95]
 gi|160360849|gb|ABX32463.1| Sua5/YciO/YrdC/YwlC family protein [Petrotoga mobilis SJ95]
          Length = 344

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 155/334 (46%), Gaps = 27/334 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +   +++A + +     +  PTETVYGL  +  +  A+R+++E K RP  NPLI HVS+
Sbjct: 13  IEEEKIKEAAQAIKEDKTVVFPTETVYGLGANGLSENAVRKIFEAKGRPYDNPLILHVSN 72

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +    ++  +    L   +   PGP+T VL       +  + TA   T   R+P      
Sbjct: 73  VRSFLEYTYISYALLEKIERLLPGPITFVLKKREV--VPDIVTAGKDTLAIRMPAHPVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLIE    P+A PSAN SG+ S T  +H+L   + K +  II GG  + G+ESTI+++  
Sbjct: 131 KLIEYAEVPIAAPSANISGKPSPTMSEHVLKDMLGK-VDYIIIGGKVEFGVESTIIDLTQ 189

Query: 186 EKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
            K   ILRPG +  E LK         +  Y   E    +SPGM   HYAP + V L  +
Sbjct: 190 GKIPIILRPGPIPPEKLKEIFGDIIIPDFVYGKIEPDYIKSPGMKYRHYAPNTPVIL--V 247

Query: 242 HVNPREALIRFGNVPIKNIENAIISL----------------NLSKTGKLKEAAFNLFNY 285
             +    +++     +K+  N ++                   +       E A  LF  
Sbjct: 248 EHDDANTMVKKVLEEVKSYNNPLVLCLKEHVGYYKDHNINFDTIGSESNYYEFAVKLFEM 307

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++  D+    ++    I + G+GIA+ NRL +AA
Sbjct: 308 LRKYDEK-VDAMIIEGIEDKGIGIAVMNRLRKAA 340


>gi|320157253|ref|YP_004189632.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
 gi|319932565|gb|ADV87429.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
          Length = 320

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 101/320 (31%), Positives = 161/320 (50%), Gaps = 14/320 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  +   + +A E L +G  +AIPTETVYGLA D+ NP A+++++  K RPA +PLI H
Sbjct: 6   LSALEQKDIDQAKEILASGELVAIPTETVYGLAADATNPDAVKKIFAAKGRPADHPLIVH 65

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +  +  +   A  +   +  LA+ +WPGP+TL+L       + P+ T  L+T   R+P  
Sbjct: 66  IGRVEQLTDWAIDIPEEAYTLAQAYWPGPVTLLLKKAPH--VTPVVTGGLETIGIRMPAH 123

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L+++ G  +A PSAN   ++S T+ KH+++S +  +I  ++DGG    GLESTIV
Sbjct: 124 DVFATLLQSSGMAVAAPSANPYKKLSPTSAKHVMNS-LGGKIAAVLDGGDCAHGLESTIV 182

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           ++  EK  RILR G +    L   +  E+   V        PG + SHY P ++VRL   
Sbjct: 183 DLT-EKPFRILRTGPVTAAQLSATLGEEVSSPVSHNVAV--PGNVTSHYQPNTRVRLVQA 239

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKT---GKLKEAAFNLFNYMKIADDSGASSIA 298
                 AL+    +   +        N+        + E + +L+  +  AD  G   I 
Sbjct: 240 ---SDLALVGDKKIAYLHYTPFTAQENVEARQMPSSVAEYSHDLYRTLDEADKWGCEEIW 296

Query: 299 FSSIPNHGLGIAINNRLERA 318
               P      A+++RL RA
Sbjct: 297 VERPPVTENWFAVHDRLNRA 316


>gi|328350842|emb|CCA37242.1| Uncharacterized protein ywlC [Pichia pastoris CBS 7435]
          Length = 436

 Score =  298 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 28/334 (8%)

Query: 12  LRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           L +A   L +    I  PTETVYGL   S N  +++ +Y  K RP  NPLI HV+ +S +
Sbjct: 96  LDEASIILRSHKNCIGFPTETVYGLGASSLNDESVKSIYIAKNRPLDNPLITHVASLSQL 155

Query: 71  KKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +        +  + L L K FWPGPLT++L +   T +  L+TA   T   R+P     
Sbjct: 156 HRKILPPSTKIPDIYLPLIKKFWPGPLTILLPVEDDTTLSRLTTAGQDTFAVRIPNHPVA 215

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI     PLA PSAN S + S T  +H+    +   IPLIIDGG S +GLES++VN  
Sbjct: 216 RALIAISDEPLAAPSANASTRPSPTLAEHVY-HDLQGRIPLIIDGGPSNVGLESSVVNGL 274

Query: 185 CEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
               + +LRPGG+ ++ ++         V  +   + +   ++PGM   HY+P ++V L 
Sbjct: 275 TNPPM-LLRPGGISLKQIQEVGHGWEDIVTAKKTANASEPVRTPGMKYKHYSPTAKVILF 333

Query: 240 AI--------------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                           + N + AL+      I     A  ++       + E A NLF  
Sbjct: 334 VKCGNGVKAVQEALSRYPNSKIALLTGSEFEIPETLQAQFAIVDHLGSSITEMAHNLFAK 393

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++  D +    I    +P+ G G+A+ NRL +AA
Sbjct: 394 LRNLDKNDMDYIFIEGVPDAGEGLALMNRLSKAA 427


>gi|241889771|ref|ZP_04777069.1| SUA5 domain protein [Gemella haemolysans ATCC 10379]
 gi|241863393|gb|EER67777.1| SUA5 domain protein [Gemella haemolysans ATCC 10379]
          Length = 343

 Score =  298 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 166/342 (48%), Gaps = 23/342 (6%)

Query: 2   QIMSITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I++I+ S +  +    L      G  +AIPTETVYGL+ ++ +  A+ ++YE K RP+ 
Sbjct: 4   EIINISKSESKEEIYSKLTEYYKRGKLVAIPTETVYGLSANAMDDEAVSKIYEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H  ++S + +           L   FWPGP+TL+L++     I    TA L T  
Sbjct: 64  NPLIVHFYEMSQLDEIVDYSDENVKKLIDKFWPGPMTLILNVKENNGISKKVTAGLNTLA 123

Query: 117 FRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P   T + +++     LA PSAN SG+ S T  +H+    +  +I +II+   S IG
Sbjct: 124 VRMPSNVTARGILKETEILLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSDIG 182

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE----LEYCVDETSTPQSPGMLKSHYA 231
           LEST+++      + I RPG +  E ++  +        E  + +   P SPGM   HY+
Sbjct: 183 LESTVIDCT-RYPLVIARPGDITKEDIESVLGEGSVKYNEEVLTQNVAPISPGMKYRHYS 241

Query: 232 PRSQVRLRAIHVNPREALIRF-----GNVPIKNIENAIISLNLS------KTGKLKEAAF 280
           P +++ L          +++      G +  K +E+ +  LN+S          ++++  
Sbjct: 242 PEAELVLFNDSFENLINILKDKNQKTGFITYKEMESRVDDLNVSIKYLAENEKSVEQSNK 301

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           NL+N ++  D+     I    I       A+ NRL +A + +
Sbjct: 302 NLYNILREFDEEKVEEIFILPIEETKENKALLNRLNKAISKK 343


>gi|269792803|ref|YP_003317707.1| Sua5/YciO/YrdC/YwlC family protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100438|gb|ACZ19425.1| Sua5/YciO/YrdC/YwlC family protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 330

 Score =  298 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 117/322 (36%), Positives = 169/322 (52%), Gaps = 11/322 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ALR   + + +G  +A+PTETVYGL  D+ NP A RR++++K RP  NP+I HVS   
Sbjct: 13  EGALRLGADLILSGRLVAMPTETVYGLGGDATNPEAARRIFQVKGRPLDNPIIVHVSCSE 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             ++   + PL+  LA+ FWPGPLTLV+       +       L T   R P     ++L
Sbjct: 73  EAREVGRMTPLAEDLARAFWPGPLTLVVPSRGV--VPREFLGGLDTVGIRCPSHPVARRL 130

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           IE  G P+  PSANRSG+ S T+   +L   +   IPLI+DGG  ++GLEST+V+V   +
Sbjct: 131 IEISGVPIGAPSANRSGRPSPTDALTVL-EDLEGLIPLILDGGPCEVGLESTVVDVTGSE 189

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            V ILR GG+    + +A+   ++    E    +SPG    HYAP   V L    V  + 
Sbjct: 190 PV-ILRQGGVTERMIVQAVG-RVQVAAGEELLRRSPGTRHRHYAPEVPVLLWDRSVPVQC 247

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG- 306
              R G V I +    + + ++     L+E AF LF   +  +  GAS I    +P  G 
Sbjct: 248 PPGRVGYVGISDPPFEV-AWSVRPR-DLREYAFLLFRTFREMERGGASVIVAE-LPERGE 304

Query: 307 -LGIAINNRLERAAAPRNQSQR 327
            LG AI +RL RA+  R  ++ 
Sbjct: 305 ALGDAIRDRLIRASGGRGLAKS 326


>gi|289523378|ref|ZP_06440232.1| Sua5/YciO/YrdC/YwlC family protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503070|gb|EFD24234.1| Sua5/YciO/YrdC/YwlC family protein [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 341

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 109/320 (34%), Positives = 164/320 (51%), Gaps = 12/320 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   ++ A E +  G  +A PTETVYGL  ++ + +A+R ++  K RP  NPLI HV+++
Sbjct: 15  EREIIKIAAEAIVKGKLVAFPTETVYGLGANALDESAVRGIFSAKGRPCDNPLIVHVANV 74

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
              +K A     +L L + FWPGPLTLV+   +   +   +   L+T   R+P       
Sbjct: 75  ESAEKIAHTTSKALRLMERFWPGPLTLVM--KAKDIVPKATRGGLETVAVRMPAHPVALA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LIE  G P+A PSAN SG+ S T+   ++   +   + +I+D G + +G+EST+++V  E
Sbjct: 133 LIEKSGVPIAAPSANTSGRPSPTDA-GVVYDDLGCCVDVILDTGPTDVGVESTVIDVTQE 191

Query: 187 KKVRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RA 240
           K V +LRPGGL +E ++       +  EL     E    +SPG    HYAPR +V L R 
Sbjct: 192 K-VVLLRPGGLPVEAIEEFGEEVMLPDELGAGRAEDVKRKSPGTRYRHYAPRCRVVLWRE 250

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
               P E     G + IK      IS  +     L+  A  LF  M+  +  G   I   
Sbjct: 251 GDDWPLERDEAVGYMGIKRPPL-DISEKVILFDSLEHYARGLFMAMRYLEKKGVKVIVAD 309

Query: 301 SIPNHGLGIAINNRLERAAA 320
                GLG+AI +RL RA++
Sbjct: 310 YPVKEGLGLAIRDRLYRASS 329


>gi|295428703|ref|ZP_06821329.1| translation factor [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295127373|gb|EFG57013.1| translation factor [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 365

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 38  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 97

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 98  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 156

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 157 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 214

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 215 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 274

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 275 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 333

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 334 YIYGFELNDNTEAIMNRMLKAAGN 357


>gi|317033381|ref|XP_001395551.2| protein SUA5 [Aspergillus niger CBS 513.88]
          Length = 434

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 169/393 (43%), Gaps = 82/393 (20%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ A+  A + L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HV  
Sbjct: 39  EAAAIEDAAQLLRTSDIPVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIIHVDS 98

Query: 67  ISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           + M+++  +                + P+   +   FWPGPLT++L   S + + P  T+
Sbjct: 99  LGMLERLLNPTQESPSRRTSTAKNAIPPIYDSVISRFWPGPLTILLPNPSGSPLAPEVTS 158

Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   R+P     + LI     PLA PSAN S + S T  +H+    +   I LI+DG
Sbjct: 159 KLTTFGVRMPSSPLARLLIHVTDRPLAAPSANASTKPSPTAAEHVF-HDLEGRIELILDG 217

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSP 223
           G   +G+EST+V+   +    ILRPGG+ IE L+     E       +  +D    P++P
Sbjct: 218 GPCGVGVESTVVDGLSDPPA-ILRPGGIGIEELRTCAGWENVQVGYHDGTLDVKEIPRAP 276

Query: 224 GMLKSHYAPRSQVRL--------------RAIHVNPREALIRFGNVPIKNIENAII---- 265
           GM   HY+P+++V L              R    +        G V  ++ +  +     
Sbjct: 277 GMKYRHYSPKARVVLFEAGSDEEAVTRHIRKDLEDSAIGAHMIGVVRTQHWKRGLGLLSA 336

Query: 266 ------------------------------------SLNLSKTGKLKEAAFNLFNYMKIA 289
                                               + +      +K  A  LF+ ++  
Sbjct: 337 NEMQKSLKRIPSLVDELVGFSVPVSGQVNGSTATKETFDCHLGTDVKSIAQGLFSALRAM 396

Query: 290 DDSGASSIAFSSIPNH--GLGIAINNRLERAAA 320
           D+     I    +P+H   L  A+ NRL +AA 
Sbjct: 397 DEMEVDVIYVEGVPDHQGDLAAAVMNRLRKAAG 429


>gi|255718989|ref|XP_002555775.1| KLTH0G17116p [Lachancea thermotolerans]
 gi|238937159|emb|CAR25338.1| KLTH0G17116p [Lachancea thermotolerans]
          Length = 401

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 104/356 (29%), Positives = 158/356 (44%), Gaps = 43/356 (12%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+ N L  A    D    +  PTETVYGL   S N  ++  +Y+ K RP+ NPLI H+S 
Sbjct: 43  TEQNLLEAARTIRDTDDTVGFPTETVYGLGGSSLNDKSVLNIYKAKNRPSDNPLISHISS 102

Query: 67  ISMVKK-----------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           I  + +             ++  +   L +  WPGPLT++L +   + +  L+TA+  T 
Sbjct: 103 IDQLNRKIYGQESCSDILQNIPQIYRSLTEKLWPGPLTILLPVPQQSTLSKLTTADQPTF 162

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI     P+A PSAN+S + S T   H+    +   IPLI+DGG   +
Sbjct: 163 AVRIPSNPIARALIALSDTPIAAPSANQSTRPSPTLASHVF-HDLKGRIPLILDGGACSV 221

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA-------ISVELEYCVDETSTPQSPGMLK 227
           G+EST+V+      + +LRPGG   E ++           VE +  V E    ++PGM  
Sbjct: 222 GVESTVVDGLVSPPL-LLRPGGFTWEQIRSMGGPQWVDCKVENKKTVSEGEKVRTPGMKY 280

Query: 228 SHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKL------------ 275
            HY+P+++V L A          R  NV     ++A      +    L            
Sbjct: 281 RHYSPQAKVILFAPQEGSAPLEKRLENVKSVITDHARDVRGFAVLSSLTFPDNLLDDPHG 340

Query: 276 ---------KEAAFNLFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAAP 321
                     E   NLF Y++  D+      I    I   G G+A+ NRL +AA+ 
Sbjct: 341 IYRCLGSSNTEIQANLFAYLRQVDEMPNIDIIFVEGIDEEGEGLAVMNRLRKAASN 396


>gi|330719387|ref|ZP_08313987.1| putative translation factor [Leuconostoc fallax KCTC 3537]
          Length = 337

 Score =  298 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 102/332 (30%), Positives = 158/332 (47%), Gaps = 16/332 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    +  A + L  G  +A PTETVYGL   + +  A+R+++  K RP+ NPLI  V+D
Sbjct: 8   TSEQDILFAGKLLSQGEVVAFPTETVYGLGAVATDEVAVRKVFTAKGRPSDNPLIVTVAD 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            +MV++ A  + +S  L   FWPG LT++L + +        T  L T  FR+P     +
Sbjct: 68  KAMVQQFAVENDMSQKLMAAFWPGSLTIILPMRAQA-FSMTVTGGLNTVAFRLPDNEVAR 126

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            +I     P+  PSAN SG+ S T  +H+    +  +I  I+D G + +G+EST+++V  
Sbjct: 127 AVIRAAKAPIVGPSANTSGKPSPTTAQHVW-HDMAGKIAAIVDDGPTTVGVESTVIDVSG 185

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS-----TPQSPGMLKSHYAPRSQV---- 236
                ILRPG +  E L   ++  +       S     TP++PGM   HYAP   V    
Sbjct: 186 NVP-TILRPGAITQEQLVAVLAQPVHDATTTESVASDVTPKAPGMKYRHYAPDKHVVMFD 244

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDS-G 293
            L A+ +  +           + ++   I      S    L+ A   LF+ ++  DD   
Sbjct: 245 ELDAVDLAQKLQDNDVVMAQDRILQAMAIKSQQAWSLGDSLESATEQLFSGLRFYDDQPK 304

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             +I    +   GLG A NNRL +AA  +  S
Sbjct: 305 VGTIYVQKMIPVGLGKAYNNRLAKAAGNQEFS 336


>gi|258512736|ref|YP_003186170.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479462|gb|ACV59781.1| Sua5/YciO/YrdC/YwlC family protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 360

 Score =  298 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 34/341 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+  + L  G  +A PTETVYGL  ++    A+RR++  K+RP  NPLI H++D + ++
Sbjct: 19  LREPAQSLRRGGLVAFPTETVYGLGANALEEEAVRRIFAAKERPRDNPLIVHIADDAKLR 78

Query: 72  KHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                +      ++ L + FWPGPLTL+L   +   + P           R+P     + 
Sbjct: 79  DVIDENQPLHEDAVRLMRAFWPGPLTLLLP--AGARLAPSVHPGQPLVGVRMPDHPVARA 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANRSG+ S T    ++ + +   I  ++DGG   IG+EST++ +   
Sbjct: 137 LIAEAGVPVAAPSANRSGRPSPTTPDDVV-ADLDGRIDWLVDGGPCPIGVESTVL-LLEP 194

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
              RILRPGG+  E +   I   + Y     D  S P +PGM   HYAP ++V +     
Sbjct: 195 DCARILRPGGVTQEMIASVIDRPVLYAADVFDVASAPLAPGMKYRHYAPNARVHVWWGEP 254

Query: 244 NP-REALIRFGNVPIKNIENAIISL--------------------NLSKTGKLKEAAFNL 282
               EA+  F    +++ +  + +L                     L      +E A +L
Sbjct: 255 EAIDEAMRAFLLEAVQDDDLMVPALIAPDDFVRRFGWALSDERQAVLPADTYAEELARHL 314

Query: 283 FNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAAAPR 322
           +  ++  D +GA+ +    + P HG+G A+ NRL +A+A R
Sbjct: 315 YRLLRAFDGAGATDVLVHGVDPTHGVGAAVMNRLYKASAGR 355


>gi|45190306|ref|NP_984560.1| AEL300Cp [Ashbya gossypii ATCC 10895]
 gi|44983202|gb|AAS52384.1| AEL300Cp [Ashbya gossypii ATCC 10895]
          Length = 418

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 165/371 (44%), Gaps = 53/371 (14%)

Query: 2   QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +I        L +A   +   G  +A PTETVYGL   S N  ++R +Y+ K RP+ NPL
Sbjct: 45  RISDPETEKHLLEAARLIRDDGETVAFPTETVYGLGGSSLNDASVRNIYKAKNRPSDNPL 104

Query: 61  ICHVSDISMVKK-----------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109
           I HVS I+ + +             ++  +   L +  WPGPLT++L +   T +  L+T
Sbjct: 105 ISHVSSIAQLNRRIYQQDREGDVLRNIPVVYHELVRQLWPGPLTILLPINEETALSVLTT 164

Query: 110 ANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           A   T   R+P     + LI     P+A PSAN S + S T  +H+    +  +IPLI+D
Sbjct: 165 AGQPTFAVRIPADPVARALIALSDTPIAAPSANVSTRPSPTAAEHVY-HDLKGKIPLILD 223

Query: 169 GGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC-------VDETSTPQ 221
           GG  ++G+EST+++      + +LRPGG   E +      +  +C       V      +
Sbjct: 224 GGSCRVGVESTVIDGLVNPPM-LLRPGGFTYEEIIELGGEQWSHCKVENRMTVGSGEKVR 282

Query: 222 SPGMLKSHYAPRSQV-------------------------RLRAIHVNPREAL-----IR 251
           +PGM   HY+PR+                            + +   + R+ +     I 
Sbjct: 283 TPGMKYKHYSPRASTVAFAPINDDLPTSERMKIVTSEIMKYMTSHGTDKRQKVGLLTSIM 342

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIA 310
           F N  +++I + +  +  S     KE   NLF  ++  D+      I    I +   G+A
Sbjct: 343 FPNNLLESITDEVDVVVYSLGSSGKEVQSNLFAMLRRLDEEDEVDLIFVEGISDRNEGLA 402

Query: 311 INNRLERAAAP 321
           + NRL +AA  
Sbjct: 403 VMNRLRKAAGG 413


>gi|313895787|ref|ZP_07829341.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975212|gb|EFR40673.1| Sua5/YciO/YrdC/YwlC family protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 355

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 101/345 (29%), Positives = 158/345 (45%), Gaps = 28/345 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+S      +  A   +  G  +A PTETVYGL     +  A  R+Y  K RP+ NPLI
Sbjct: 4   KIISPVREADIAYAARMIRDGALVAFPTETVYGLGASGLDAAACARIYAAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H++D+SM    A  + P + HL   F PGP+T++L   +   I  + T  L T   R P
Sbjct: 64  LHIADLSMAADAARTIPPAAAHLLTAFAPGPITVILPKAAH--IPDIVTGGLSTVGVRCP 121

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + LI   G P+A PSAN SG+ S T    + +  +   IP I+DGG  + G+EST
Sbjct: 122 DHDIARALIRAAGVPVAAPSANTSGRPSPTTAVMV-ADDLAGRIPCILDGGACRWGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI---SVELEYCVDETST-PQSPGMLKSHYAPRSQ 235
           IV+   +  V +LRPG +  E +   +    V ++  +      P++PGM   HYAPR+ 
Sbjct: 181 IVDCTEDGVVTVLRPGAVTREMIAAELPHMEVRVDPALTAADAVPRAPGMKYRHYAPRAP 240

Query: 236 VRLRAIHVNPREALIRF-------------------GNVPIKNIENAIISLNLSKTGKLK 276
           + +     +   A +R                        +  I +          G   
Sbjct: 241 LAVYTGAPDAVAAALRAEILRQRAEGTQIGLIAFRETCAALTGIISPAYVYACGVRGDDA 300

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A  L++ ++  D++ A ++       HGLG+A+ NRL +A+  
Sbjct: 301 AYANCLYDALRRFDNTDAGALLAEGTDEHGLGLAVMNRLRKASGG 345


>gi|326402400|ref|YP_004282481.1| hypothetical protein ACMV_02520 [Acidiphilium multivorum AIU301]
 gi|325049261|dbj|BAJ79599.1| hypothetical protein ACMV_02520 [Acidiphilium multivorum AIU301]
          Length = 322

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 126/312 (40%), Positives = 172/312 (55%), Gaps = 11/312 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  +A  TETVYGL  D+ N +A+  +YE K RP  NPLI H  D     +HA+ 
Sbjct: 17  ELLRAGELVAFATETVYGLGADATNASAVAAIYEAKGRPRFNPLISHFPDADAAFRHAAA 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           D  +   A+ FWPGPLTLVL     +DI  L+TA L +   RVP     + L+   G P+
Sbjct: 77  DARAREAAQAFWPGPLTLVLPRRDESDIAALATAGLSSVAVRVPGHGIARALLAATGRPV 136

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG++S T   H++ + +   I  I++ G  ++GLES IV++     V +LRPG
Sbjct: 137 AAPSANRSGRLSPTRPAHVI-AGLEGRIAAILESGACEVGLESAIVDLTGATPV-LLRPG 194

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  E L+  +   +    +  +  ++PGML SHYAP   +RL A      EA + FG  
Sbjct: 195 GISREALEAVLG-PVSIASEMGAAVKAPGMLASHYAPVLPMRLGATAPEDGEAWLGFGIE 253

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD----SGASSIAFSSIPNHGLGIAI 311
           P        +S NLS  G L EAA  LF+ +   D     +    IA + +P  GLG AI
Sbjct: 254 PPTLPP---VSRNLSPAGDLVEAAARLFDSLHELDAAAGLARLRRIAVARVPERGLGAAI 310

Query: 312 NNRLERAAAPRN 323
           N+RL RAAAPR+
Sbjct: 311 NDRLARAAAPRS 322


>gi|257896819|ref|ZP_05676472.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com12]
 gi|257833384|gb|EEV59805.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com12]
          Length = 311

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 97/306 (31%), Positives = 153/306 (50%), Gaps = 20/306 (6%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGP 91
           YGL  ++  P  +++++ +K RP  NPLI HV+    VK++     P +  + K FWPGP
Sbjct: 2   YGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPETEKIVKNFWPGP 61

Query: 92  LTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150
           LTL+  +   T +  + T  L TA FR+P    T ++IE  G PL  PSAN SG+ S T 
Sbjct: 62  LTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPTT 120

Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVE 209
             H+    +  +I  IID G ++IG+EST++++        ILRPG +  E ++  I   
Sbjct: 121 ADHVF-HDLQGKITGIIDDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIESP 179

Query: 210 L---EYCVDETSTPQSPGMLKSHYAPRSQVRLR------AIHVNPREALIRFGNVPIKNI 260
           +   ++ V E  TP++PGM   HY+P + V +             +   IR G +    I
Sbjct: 180 VAIDQHLVKENETPKAPGMKYKHYSPDTCVLMVREGDWSTAVQWAKNKKIRVGVIASPEI 239

Query: 261 ENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNR 314
            + +     ++ +     ++ AA  LF  ++  D+   G   I     P  GLG A  NR
Sbjct: 240 SDQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNR 299

Query: 315 LERAAA 320
           L++AA 
Sbjct: 300 LKKAAG 305


>gi|160935044|ref|ZP_02082430.1| hypothetical protein CLOLEP_03920 [Clostridium leptum DSM 753]
 gi|156866497|gb|EDO59869.1| hypothetical protein CLOLEP_03920 [Clostridium leptum DSM 753]
          Length = 335

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/329 (30%), Positives = 158/329 (48%), Gaps = 20/329 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   +R+A E +  G  + IPTETVYGLA ++ N +  R+++  K RP+ NPLI H++  
Sbjct: 5   DDKGIRRAAEIIQQGGLVGIPTETVYGLAGNALNGSVSRKIFAAKGRPSDNPLIVHIAAE 64

Query: 68  SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK- 125
              +      P  +  LA  +WPGPLT+VL    +  +   ++  L T   R+P      
Sbjct: 65  EEARPLVKEFPEPARKLAAAYWPGPLTMVLP--KSELVPMETSGGLSTVAVRLPAHPVAN 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +LI   G PLA PS N SG+ S T  +H+L   +   I  I+DGG   +G+EST++ +  
Sbjct: 123 RLIRACGCPLAAPSGNLSGRPSPTTARHML-HDMDGRIDAILDGGPCGVGVESTVLAL-A 180

Query: 186 EKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           E+K R+LRPGG+ +E L+R +        + + + + +   SPGM   HYAP+++V L  
Sbjct: 181 EQKPRLLRPGGVTLEMLQRVVGAVTVDPAVLHKLADGAQAASPGMKYKHYAPKAKVILVK 240

Query: 241 IHVNPREALIRFGNVP--------IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD- 291
                    +     P               + S+           A  LF+ ++  D+ 
Sbjct: 241 GTAERYREFVNSKKAPGVGALCFDEDQHLLKVPSVPYGSGNDSAAQARELFDALRELDER 300

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
                +        G+G+A+ NRL RAA 
Sbjct: 301 QEIQLVYARCPEPEGVGMAVYNRLIRAAG 329


>gi|19075544|ref|NP_588044.1| SUA5/yciO/yrdC family protein Sua5 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74582918|sp|O94530|SUA5_SCHPO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           sua5; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein sua5
 gi|4164422|emb|CAA22839.1| SUA5/yciO/yrdC family protein Sua5 (predicted) [Schizosaccharomyces
           pombe]
          Length = 408

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 111/363 (30%), Positives = 168/363 (46%), Gaps = 54/363 (14%)

Query: 10  NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +AL  A   L     P+A PTETVYGL  D+R   A+  +Y+ K RPA NPLI HV+ + 
Sbjct: 40  SALENAANILRNTDYPVAFPTETVYGLGADARRTEAVLSIYKAKNRPADNPLIVHVASLD 99

Query: 69  MVKKHA--------------------SVDPLSLHLAKLFWPGPLTLVLDLL--STTDIHP 106
            +++                       +  + L L K FWPGPL+++L ++  +   + P
Sbjct: 100 QLRRLLLSAYPKAKSEVKNQAHDSEEIIPKVYLPLIKKFWPGPLSILLPVVDEANPPVSP 159

Query: 107 LSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
           + TA  KT   R+P       LI     PLA PSAN S + S T  KH+ +  +  +IPL
Sbjct: 160 IVTAGQKTFAVRMPQHPVALALISISDSPLAAPSANASTRPSPTLAKHVYND-LQGKIPL 218

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS--------VELEYCVDET 217
           I+DGG   +G+EST+VN  C+  V ILRPGG+ +E ++ +          V  +  ++  
Sbjct: 219 ILDGGACGVGVESTVVNGLCDPPV-ILRPGGISLEEIQSSGGAWERTKVFVAKKSDMETD 277

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI--ENAIISLNLSKTGKL 275
             PQ+PGM   HY+P ++V L   +       +    +  + I  E   I +  SK    
Sbjct: 278 FIPQTPGMKYRHYSPTAKVLLFVNYTESDAYGVFEKYLSEQGITKEKQKIGVLCSKRWNE 337

Query: 276 K------------------EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
           +                  E   NLF  ++  D  G   +    +     G+AI NRL +
Sbjct: 338 ESFPSHCPFVFLHMGRDGHEITKNLFAQLRDLDLQGVDFVLVEGVSEENEGLAIMNRLGK 397

Query: 318 AAA 320
           AA+
Sbjct: 398 AAS 400


>gi|257899727|ref|ZP_05679380.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com15]
 gi|257837639|gb|EEV62713.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium Com15]
          Length = 311

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 20/306 (6%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGP 91
           YGL  ++  P  +++++ +K RP  NPLI HV+    VK++     P +  + K FWPGP
Sbjct: 2   YGLGANALLPNTVKKVFSVKGRPQDNPLIVHVASFEQVKEYVDNFHPEAEKIVKNFWPGP 61

Query: 92  LTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150
           LTL+  +   T +  + T  L TA FR+P    T ++IE  G PL  PSAN SG+ S T 
Sbjct: 62  LTLIFKIKKDT-LPSVVTGGLSTAAFRMPDNKKTLEVIELSGVPLVGPSANTSGKPSPTT 120

Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVE 209
             H+    +  +I  II+ G ++IG+EST++++        ILRPG +  E ++  I   
Sbjct: 121 ADHVF-HDLQGKITGIIEDGATRIGVESTVLDLSNPTAMPMILRPGAVTKEQIEAVIGSP 179

Query: 210 L---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI------HVNPREALIRFGNVPIKNI 260
           +   ++ V E  TP++PGM   HY+P ++V +             +   IR G +    I
Sbjct: 180 VAVDQHLVKENETPKAPGMKYKHYSPDTRVLMVRDGDWSIAVQWAKNKKIRAGVIASPEI 239

Query: 261 ENAI----ISLNLSKTGKLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNR 314
            + +     ++ +     ++ AA  LF  ++  D+   G   I     P  GLG A  NR
Sbjct: 240 ADQVRTDTAAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNR 299

Query: 315 LERAAA 320
           L++AA 
Sbjct: 300 LKKAAG 305


>gi|329729335|gb|EGG65743.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 348

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + Y   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITEILPNSIAYADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA+ 
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAASN 340


>gi|114328864|ref|YP_746021.1| sua5/YciO/YrdC/YwlC family protein [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317038|gb|ABI63098.1| sua5/YciO/YrdC/YwlC family protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 341

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/323 (37%), Positives = 169/323 (52%), Gaps = 18/323 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
             A   L  G  +A PTETV+GL  D+    A+ R++  K RP  NPLICH+ D      
Sbjct: 16  EAAGRLLRQGALVAFPTETVWGLGADATCADAVARIFAAKDRPRFNPLICHLPDAESAFT 75

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
           H   D  +  LA  FWPGPLT+VL     + +  L++A  +T   RVP     ++++   
Sbjct: 76  HGIADDRARALAAAFWPGPLTMVLRRNPDSPVSLLASAGQETLALRVPALDLARRMLVAA 135

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+A PSANRSG++S T+  H++   +   I  ++DG    +G+EST++++     + +
Sbjct: 136 GCPVAAPSANRSGRVSPTSRDHVM-EGLAGRIDAVLDGPDCMVGVESTVIDLSGPSAI-L 193

Query: 192 LRPGGLEIETLKRAISVELEYCVDETST-------PQSPGMLKSHYAPRSQVRLRAIHVN 244
           LRPGG+  E L+  I         E            SPGM++SHYAP   VRL A+ V 
Sbjct: 194 LRPGGVSREALRDVIGDVTVLSAPEGGADGSREQVLLSPGMMRSHYAPSLTVRLDAVSVA 253

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD----DSGASSIAFS 300
             EAL+ FG      +  A +  NLS  G + EAA  LF+ ++  D      G   IA  
Sbjct: 254 ADEALLAFG----PPLPGAGLVWNLSAAGDVIEAATRLFSGLRTLDSKGRQRGLRGIACM 309

Query: 301 SIPNHGLGIAINNRLERAAAPRN 323
            +P  GLG AIN+RL RAAAPR 
Sbjct: 310 RVPMQGLGEAINDRLARAAAPRE 332


>gi|253731046|ref|ZP_04865211.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257426255|ref|ZP_05602670.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428913|ref|ZP_05605307.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431522|ref|ZP_05607895.1| translation factor [Staphylococcus aureus subsp. aureus 68-397]
 gi|257434231|ref|ZP_05610581.1| translation factor [Staphylococcus aureus subsp. aureus E1410]
 gi|257437144|ref|ZP_05613184.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M876]
 gi|282904785|ref|ZP_06312659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906460|ref|ZP_06314311.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909429|ref|ZP_06317244.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911681|ref|ZP_06319480.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914965|ref|ZP_06322745.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282920294|ref|ZP_06328018.1| translation factor [Staphylococcus aureus subsp. aureus C427]
 gi|282925505|ref|ZP_06333159.1| translation factor [Staphylococcus aureus subsp. aureus C101]
 gi|283958896|ref|ZP_06376341.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293509033|ref|ZP_06667820.1| translation factor [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510948|ref|ZP_06669647.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M809]
 gi|293547550|ref|ZP_06672225.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297589817|ref|ZP_06948457.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|253725234|gb|EES93963.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|257270960|gb|EEV03133.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274255|gb|EEV05772.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277763|gb|EEV08433.1| translation factor [Staphylococcus aureus subsp. aureus 68-397]
 gi|257280870|gb|EEV11015.1| translation factor [Staphylococcus aureus subsp. aureus E1410]
 gi|257283537|gb|EEV13664.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M876]
 gi|282312906|gb|EFB43307.1| translation factor [Staphylococcus aureus subsp. aureus C101]
 gi|282316154|gb|EFB46535.1| translation factor [Staphylococcus aureus subsp. aureus C427]
 gi|282321168|gb|EFB51499.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324446|gb|EFB54759.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326699|gb|EFB56997.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330410|gb|EFB59928.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282594818|gb|EFB99795.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|283789614|gb|EFC28437.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919670|gb|EFD96743.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094737|gb|EFE25009.1| translation factor [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466233|gb|EFF08760.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus M809]
 gi|297576945|gb|EFH95659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437466|gb|ADQ76537.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH60]
          Length = 357

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 30  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 90  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 267 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349


>gi|170090858|ref|XP_001876651.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648144|gb|EDR12387.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 380

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/356 (30%), Positives = 165/356 (46%), Gaps = 40/356 (11%)

Query: 3   IMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           I S   S AL  A   L      +  PTETVYGL   +++  A  +++  K RP  NPLI
Sbjct: 24  ISSPDTSRALDIAAHHLRDLSQTVVFPTETVYGLGASAQSTQATSKIFSTKGRPPDNPLI 83

Query: 62  CHVSDISMVKKH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HVS ++M++       ++      L K FWPGPLTL+    +   I  + TAN  +   
Sbjct: 84  VHVSSLTMLRTLLPLGYNLSRAYEVLIKHFWPGPLTLLFPRNADI-IPTIVTANQPSVAI 142

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + LI +   PLA PSAN SG+ S T V+H+L   +  ++P+I+DGG   IGL
Sbjct: 143 RMPSHPVARALIASSNLPLAAPSANSSGKPSPTRVEHVLRD-LDGKVPIILDGGACDIGL 201

Query: 177 ESTIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS---TPQSPGMLKSHYAP 232
           EST+V+ +Q +  +RILRPGG+ +E ++R +  E+  C         P +PGM   HY+P
Sbjct: 202 ESTVVDGLQADGNIRILRPGGITVEEIERVLRQEMHDCAQIPKVLNAPTTPGMKYRHYSP 261

Query: 233 RSQVRLRAIHVNPRE-----ALIRFGNVPIKNIENAIISL-------------------- 267
              V L     +P +     A+  F    +   +   I +                    
Sbjct: 262 SVPVTLICTSSSPPQGTNPLAVSAFLESLVNTHDEVKIGVMAPSDSKLWGFLVPKEGLHW 321

Query: 268 ---NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
              +L  +      A  LF+ +   +  G   I    +     G+AI NR+ +AA 
Sbjct: 322 RRYDLGPSSDPSVTAHRLFDGLLTLEKEGVHLILIEEVKEDREGLAIMNRVRKAAG 377


>gi|49484340|ref|YP_041564.1| hypothetical protein SAR2204 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49242469|emb|CAG41185.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|315193281|gb|EFU23679.1| hypothetical protein CGSSa00_02191 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 348

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340


>gi|260424635|ref|ZP_05732759.2| Sua5/YciO/YrdC/YwlC family protein [Dialister invisus DSM 15470]
 gi|260402640|gb|EEW96187.1| Sua5/YciO/YrdC/YwlC family protein [Dialister invisus DSM 15470]
          Length = 350

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/327 (33%), Positives = 163/327 (49%), Gaps = 20/327 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +++  E + AG  +A PTETVYGL  ++ +  A +++Y  K RP+ NPLI HV+DIS 
Sbjct: 21  DKVKRLGEVIRAGGLVAFPTETVYGLGGNALDKEAAKKIYMAKGRPSDNPLIVHVADISE 80

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           V  +   + PL   L + FWPGPLT+V        +   ++  L+T   R P     + L
Sbjct: 81  VSTYVKRILPLEKRLMEAFWPGPLTIVFP--KKDIVPMATSGGLRTIAIRCPAHEAARAL 138

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN S + S T    +L   +   I  +IDGG S IGLEST++ V+   
Sbjct: 139 IRAAGVPIAGPSANISTKPSPTTADAVL-HDMDGRIEFVIDGGDSLIGLESTVIAVE-NG 196

Query: 188 KVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           K+ I RPGG+  + L+     EL+     E   P++PGM   HYAP + + + A ++   
Sbjct: 197 KIIIYRPGGITRDMLEAFAPTELDTAITAEQEHPKAPGMKYRHYAPSAPLTVYAGNIEAV 256

Query: 247 EALI---------RFG----NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           E+ I         +FG        + I    I     + G  KE A NLF  +   ++  
Sbjct: 257 ESEILSFANKGKGKFGFFVSQETAEKIPAGNIIFVWGRRGNKKELAHNLFQGLLFFNNHP 316

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I        G+G+AI NRL +A+ 
Sbjct: 317 VDHIIGEGTDGGGIGMAIMNRLTKASG 343


>gi|282917465|ref|ZP_06325218.1| translation factor [Staphylococcus aureus subsp. aureus D139]
 gi|283771284|ref|ZP_06344173.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus H19]
 gi|282318667|gb|EFB49024.1| translation factor [Staphylococcus aureus subsp. aureus D139]
 gi|283459489|gb|EFC06582.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus H19]
          Length = 357

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 30  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 90  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S TN  H+    +   I  I+    S+ GLEST+++       
Sbjct: 149 IINEPLAAPSANLSGRPSPTNFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 267 DGKDWSSIAFIVPRNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349


>gi|206895712|ref|YP_002247420.1| universally conserved protein [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738329|gb|ACI17407.1| universally conserved protein [Coprothermobacter proteolyticus DSM
           5265]
          Length = 330

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/321 (31%), Positives = 163/321 (50%), Gaps = 16/321 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +RKAC+ L  G  +A PTETVYGL   + N  A+R+++ +K RP  NPLI HVSD+
Sbjct: 11  EQSLIRKACQVLLDGFVVAFPTETVYGLGAIATNEEAVRKIFHLKGRPTDNPLIVHVSDL 70

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           S V      V   +  + ++FWPGPL+++L    +  +  ++   L++   R+P      
Sbjct: 71  SQVYDLVTEVPEKARKVMEVFWPGPLSVILQAKESVPL--VTRGGLESVAIRMPAHPVAL 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     P+A PSAN+SG+ S T  +H+       +  LI+D G + +GLEST+V+V+ E
Sbjct: 129 SLIRCAGPIAAPSANKSGRPSPTTAEHVYQDF--GDDVLILDAGPTLVGLESTVVDVR-E 185

Query: 187 KKVRILRPGGLEIETLKRAISVELEYC--VDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
           +  +I RPG +  E L+    V +EY   ++E     SPGM   HYAP   V L      
Sbjct: 186 EPWKIYRPGAVTREMLEAHGHVSVEYVGKIEENGAVPSPGMKYRHYAPNVPVFLFRDVDE 245

Query: 245 -----PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
                    +   G   I + +  II ++L        AA  ++  ++ A+  G  +   
Sbjct: 246 LPPNQDITVIALDGLASILSGKPNIIFISLGS--DQHSAAARIYMALRQAEQFG-RTAYV 302

Query: 300 SSIPNHGLGIAINNRLERAAA 320
             +   G+GIA N R+ +AA 
Sbjct: 303 QLMDEEGIGIAYNERVRKAAG 323


>gi|82751717|ref|YP_417458.1| hypothetical protein SAB2000c [Staphylococcus aureus RF122]
 gi|82657248|emb|CAI81689.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 348

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L K FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDPSVEKLMKAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340


>gi|253733050|ref|ZP_04867215.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728958|gb|EES97687.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 357

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 30  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 90  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      +     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 267 DGKDWSSIAFIVPSNKMAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349


>gi|94971118|ref|YP_593166.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
 gi|94553168|gb|ABF43092.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
          Length = 321

 Score =  296 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 12/322 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD   ++ A   L AG  ++ PTETVYGL  ++ +  A+ R+Y  K RPA +PLI HV 
Sbjct: 1   MTDPAEIQAAARLLKAGRLVSFPTETVYGLGANALDAEAVARIYAAKGRPATSPLIVHVD 60

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            + M K   +  P +   LA+ FWPGPLTLVL   +   + P+  A L T   R+P    
Sbjct: 61  SVEMAKSLVTAWPDAADALARAFWPGPLTLVLP--ARDVVPPIVRAGLPTVGVRMPDHPL 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + LI   G PLA PSANR  QIS T  +H+   S+   + +++DGG   +G+EST++++
Sbjct: 119 AQALIRAAGVPLAAPSANRFTQISPTTAEHV-RRSLGDSVEMVLDGGPCAVGIESTVLSL 177

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
              + V +LRPGG+    ++  I    +          SPGM   HY+PR+++ L     
Sbjct: 178 AGPRAV-LLRPGGVTRAQIEAVIGPIGDADEAPEGAHPSPGMHPRHYSPRTRLLLVKDGE 236

Query: 244 NPREA---LIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADDSGASSI 297
            PR+     + +G          +   NL+        ++ A  L++ +  ADD G   I
Sbjct: 237 VPRDGRGIYLSYGRKSPPYAARRMGHPNLTVVEMPASAEKYAARLYDELHRADDGGFDWI 296

Query: 298 AFSSIPNHGLGIAINNRLERAA 319
           A   +P       + +R++RAA
Sbjct: 297 AVEQVPETPEWEGVRDRVKRAA 318


>gi|21283769|ref|NP_646857.1| hypothetical protein MW2040 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486909|ref|YP_044130.1| hypothetical protein SAS2019 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|21205211|dbj|BAB95905.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245352|emb|CAG43827.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 348

 Score =  296 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 151/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA+ 
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAASN 340


>gi|297210063|ref|ZP_06926456.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300910426|ref|ZP_07127878.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|296885263|gb|EFH24203.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300888268|gb|EFK83459.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 357

 Score =  296 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 151/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 30  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 90  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 267 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA+ 
Sbjct: 326 YIYGFELNDNTEAIMNRMLKAASN 349


>gi|282850386|ref|ZP_06259765.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula ATCC 17745]
 gi|282579879|gb|EFB85283.1| Sua5/YciO/YrdC/YwlC family protein [Veillonella parvula ATCC 17745]
          Length = 343

 Score =  296 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 157/340 (46%), Gaps = 25/340 (7%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++      +      L  G  ++IPTETVYGL  +  +  A+ ++Y  K RP+ NPLI
Sbjct: 4   KIITNPSEQDIDTLARALRNGELVSIPTETVYGLGANGLDSEAMDKIYAAKGRPSDNPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV +   +K     +   +  L   FWPGPLT+ L    +  +   +T  L     R P
Sbjct: 64  LHVPNSESIKSLVTEISATAQALMDTFWPGPLTITLP--KSDLVPDRATGGLSRVALRCP 121

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L+E  G P+A PSAN SG+ S T  + + +  +   I  I+D G   IG+EST
Sbjct: 122 DHEACRVLLERAGIPIAAPSANISGRPSPTTAEDVYND-MKGRISYILDAGPCTIGVEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRSQV 236
           +V V  + KV ILRPGG+    L+  ++  +EY    V+  + P++PGM  +HYAP + +
Sbjct: 181 VVEVH-DDKVIILRPGGITKAQLENVVAT-VEYDTALVNAATKPKAPGMKYTHYAPDAPM 238

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIIS---------------LNLSKTGKLKEAAFN 281
            +            +  +  I+     ++S                     G       +
Sbjct: 239 TVVVGSPEAIACTFKELSEGIEGPIGCLVSRETYDLIKGNTDFMCYCFGHHGDALALGHD 298

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  +   +++  + I    + + G G+AI NR+E+A++ 
Sbjct: 299 FYKSLLHFNENHVTLILAEGVDDDGFGVAIMNRMEKASSH 338


>gi|284025150|ref|ZP_06379548.1| hypothetical protein Saura13_11208 [Staphylococcus aureus subsp.
           aureus 132]
          Length = 348

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 149/324 (45%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               + DP    L + FWPGP++ +L  L    +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTFDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340


>gi|145220275|ref|YP_001130984.1| translation factor SUA5 [Prosthecochloris vibrioformis DSM 265]
 gi|145206439|gb|ABP37482.1| translation factor SUA5 [Chlorobium phaeovibrioides DSM 265]
          Length = 316

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 105/324 (32%), Positives = 160/324 (49%), Gaps = 12/324 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ + ITDS    +A   L+ G  +A PTETVYGL     +P A+  ++  K RP  NPL
Sbjct: 1   MKTL-ITDSPL--EAAAILNEGKTVAFPTETVYGLGAAIDSPEALAEVFRAKGRPGDNPL 57

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+     + + A  + P +  L   F+PGPLTLVL    ++++    TA L T   R 
Sbjct: 58  IVHIGTPEELPRVASKLSPEAGLLVTRFFPGPLTLVLP--KSSEVPYAVTAGLDTVGVRC 115

Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      + ++    P+A PSANRSG+ S T+ + +  + +  +I  I+ G  S+IGLES
Sbjct: 116 PAHPAAHEFLKCCHSPVAAPSANRSGRPSATSWEAV-HNDLDGKIAAILRGNTSRIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+    + + +LR G + +E L+  + S+       +   P+SPG+   HYAPR++V 
Sbjct: 175 TIVDCTGPRPL-MLRAGAVTLEELQAIVPSITPAGETQKNEAPKSPGLKYPHYAPRARVV 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
                 +P         + +      I    L  T   +E A  LF++ +  D     +I
Sbjct: 234 THERGESPAAIPSASAWIGLGTPPVGIALAKLCTTH--EEYARELFSFFRHCDREAIQTI 291

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                P  GLG AI +RL RAA  
Sbjct: 292 YCELPPEKGLGRAIRDRLNRAAGN 315


>gi|88196020|ref|YP_500833.1| hypothetical protein SAOUHSC_02357 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87203578|gb|ABD31388.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
          Length = 365

 Score =  295 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 38  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 97

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L  L    +    +  L +   R+P     ++L++
Sbjct: 98  DFTYTLDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 156

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 157 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 214

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 215 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 274

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 275 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 333

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 334 YIYGFELNDNTEAIMNRMLKAAGN 357


>gi|258422884|ref|ZP_05685784.1| translation factor SUA5 [Staphylococcus aureus A9635]
 gi|257846908|gb|EEV70922.1| translation factor SUA5 [Staphylococcus aureus A9635]
          Length = 357

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 151/331 (45%), Gaps = 18/331 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I     + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+
Sbjct: 23  DIQQYPKINEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHI 82

Query: 65  SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
                +K    ++DP    L + FWPGP++ +L L     +    +  L +   R+P   
Sbjct: 83  HSKGQLKDFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHS 141

Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++L++    PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++
Sbjct: 142 VGRQLLQIINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLD 200

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLRAI 241
                  +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + + A 
Sbjct: 201 CTS-FPYKIARPGSITAAMITDILPNSIVHADYNDTEQPIAPGMKYKHYSPNTPLTIIAD 259

Query: 242 ------HVNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                 +     + I F      V     E   I L       +K+A+ NL++ +   D+
Sbjct: 260 IESKIGNDGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDE 318

Query: 292 -SGASSIAFSSIPNHGLGIAINNRLERAAAP 321
               S+        +    AI NR+ +AA  
Sbjct: 319 NENISAAYIYGFELNDNTEAIMNRMLKAAGN 349


>gi|256545368|ref|ZP_05472731.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus vaginalis ATCC
           51170]
 gi|256398929|gb|EEU12543.1| Sua5/YciO/YrdC/YwlC family protein [Anaerococcus vaginalis ATCC
           51170]
          Length = 345

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 107/341 (31%), Positives = 171/341 (50%), Gaps = 25/341 (7%)

Query: 2   QIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     D N L  A E +  G  +A PTETVYGL  D  NP A +++++ K RP  
Sbjct: 4   EILKIDRENIDENILNHAAEIIKKGELVAFPTETVYGLGADGLNPKAAKKIFKAKNRPED 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H+ +   + +    VD  +  L K  WPGPLT++L    ++ I  + T    T  
Sbjct: 64  NPLILHIDEDYKLDELVEKVDDRTKFLIKNLWPGPLTVIL--KKSSIIPDIITGGGDTVA 121

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P     ++ I+    P+A PSAN SG+ S TN K +    +   IPLIIDGG S IG
Sbjct: 122 VRRPKDKLAREFIKYCNTPIAAPSANISGRPSPTNAKDVYYD-MNGRIPLIIDGGSSDIG 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST++++  E    ILRPG    E +K+ I      +  VD++  P+SPG    HYAP+
Sbjct: 181 IESTVIDMSLENPC-ILRPGYYTYEYIKKFIPNVCLDDSLVDDSKVPRSPGQKYKHYAPK 239

Query: 234 SQV----------RLRAIHVNPREALIRFGNVPIKNIE---NAIISLNLSKTGKLKEAAF 280
           +++          +++ + +  +    + G +         ++  +L+L     L E + 
Sbjct: 240 AEMKVFVGDKSVEKIKDLALKYKNEGKKVGILVFDKDTEKFSSFTTLSLGNKDNLIEMSH 299

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            LF  ++  D      I    + + GLG +I NR++++A+ 
Sbjct: 300 VLFEALRDLDRKNVDIILAEGVKDIGLGKSIMNRMKKSASG 340


>gi|302348551|ref|YP_003816189.1| Putative translation factor (SUA5) [Acidilobus saccharovorans
           345-15]
 gi|302328963|gb|ADL19158.1| Putative translation factor (SUA5) [Acidilobus saccharovorans
           345-15]
          Length = 361

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 152/324 (46%), Gaps = 32/324 (9%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           +A PTETVYGL  D+ NP A+++++  K+RP  NPLI H+  ++ + + A  + P +  L
Sbjct: 36  VAFPTETVYGLGADTYNPEAVKKVFIAKRRPMDNPLIVHIHSLNQLYEVAVKIPPEAEKL 95

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           A+ FWPGP+TL+L    +  + P  TA   T   R+P        I   G P+A PSAN 
Sbjct: 96  ARRFWPGPMTLLL--WKSDKVPPEVTAGRPTVAVRMPAHPVALAFIRESGVPIAAPSANL 153

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           +G+ S T  +H++   +     +IID G +  G+ESTIV++  +  V +LRPGGL +E +
Sbjct: 154 AGRPSPTTGEHVVRD-LYGRADVIIDSGETVYGVESTIVDMTRDPPV-LLRPGGLPVEEI 211

Query: 203 KRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRL------------------- 238
           +R +  E+        + +     +PGM   HYAP  ++ +                   
Sbjct: 212 ERELGKEVVIPQFARGLGQADVALAPGMKYRHYAPFKRLTIVEGDYSDLKAYAAKVAEVV 271

Query: 239 -RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-GASS 296
            + I    R  ++          +  +  L L     +   A NLF   +  D+      
Sbjct: 272 KQEIAKGARPIILCSSETAQYYEQQGLRHLVLGPRSNIFIVARNLFKTFRAIDEMLDVDE 331

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
                    GLG+A+ NR  +A+ 
Sbjct: 332 AFMEGFEERGLGLAVMNRARKASG 355


>gi|329768870|ref|ZP_08260298.1| hypothetical protein HMPREF0433_00062 [Gemella sanguinis M325]
 gi|328837233|gb|EGF86870.1| hypothetical protein HMPREF0433_00062 [Gemella sanguinis M325]
          Length = 343

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 23/342 (6%)

Query: 2   QIMSITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I++I+ S    +  + L     +   +AIPTETVYGL+ D+ +  AI ++YE K RP+ 
Sbjct: 4   EIINISKSKNKAEIYKKLQQYYKSDKLVAIPTETVYGLSADATSDKAISKIYEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H  D+  +       D     L   FWPGP+TL+L+ +    I    TA L T  
Sbjct: 64  NPLIVHFYDVKQLDNIVDYADDRVGILIDKFWPGPMTLILNAIENNGISNNVTAGLNTLA 123

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     +++++     LA PSAN SG+ S T  +H+    + ++I +II+   S IG
Sbjct: 124 VRMPSNTTAREILKETQVLLAAPSANTSGKPSPTKYEHVY-HDLNEKIDVIIEDEQSDIG 182

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYA 231
           LEST+++      + I RPG +  E ++  +     V  +  +DE   P +PGM   HY+
Sbjct: 183 LESTVIDCTKN-PLVIARPGEITKEDIENVLGEGSVVYNDEIIDEDQAPIAPGMKYRHYS 241

Query: 232 PRSQVRLRAIHVNPREALIR-----FGNVPIKNIENAIISLNLS------KTGKLKEAAF 280
           P +++ L          L++      G +   N +N +  LN+S          +++++ 
Sbjct: 242 PEAELILYRHSFEDLLELLKTKGKETGFITYDNYKNKLKGLNISIKYLADSEKSVEQSSK 301

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           NL+N ++  D+     I    I  +   +A+ NRL +A + +
Sbjct: 302 NLYNILREFDEENIKEIYILPIKENKENVALLNRLNKAISKK 343


>gi|261414826|ref|YP_003248509.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371282|gb|ACX74027.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328197|gb|ADL27398.1| Sua5/YciO/YrdC/YwlC family/SUA5 domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 331

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 105/325 (32%), Positives = 169/325 (52%), Gaps = 13/325 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
             +M      ++ +A   L  G  +AIPTETVYGLA ++  P A+ +++  K+RP  +PL
Sbjct: 10  FWVMKFPPWTSVSEAARLLKEGEVVAIPTETVYGLAGNAFEPKALAKIFAAKERPTFDPL 69

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++DI+ +   A  +   +  LA+ +WPGP+T++L       I  L T+ L +   R 
Sbjct: 70  IVHIADIAQLTDIAKDIPDSAYRLAEAYWPGPMTIILPKKDC--IPDLCTSALPSVAVRF 127

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + +I+  G PLA PSAN    +S T  +H+ ++ +   I  I+DGG   +G+ES
Sbjct: 128 PSHPIAQAIIKESGLPLAAPSANLFKHVSPTTAEHV-AAQLADRIAGIVDGGPCSVGVES 186

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQ-SPGMLKSHYAPRSQV 236
           +I+++  E  V  +RPG +  E  K  +  V+++    +   P  +PG   +HY  R QV
Sbjct: 187 SIISLVGEPTV--MRPGAITPEMFKAILGEVKIKESTSKPGQPMLAPGQCDTHY--RPQV 242

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAII--SLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
            L    V    AL           +   +  ++NLS TG + EA   L+ +M   DD   
Sbjct: 243 PLYYGEVPAGYALPEHTVRIAFGTQQGPVPATVNLSATGDMVEATSKLYAFMHDLDDPKF 302

Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319
             I    IPN G+G+A+N+RL+RA+
Sbjct: 303 DLILVDPIPNTGVGMALNDRLKRAS 327


>gi|313884935|ref|ZP_07818687.1| Sua5/YciO/YrdC/YwlC family protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619626|gb|EFR31063.1| Sua5/YciO/YrdC/YwlC family protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 346

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 109/341 (31%), Positives = 169/341 (49%), Gaps = 25/341 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I   + L +A + L  G  +A PTETV+GL   + N  A++ +++ K RP  NPL
Sbjct: 5   MKTH-IFMPDQLDQAAQCLKEGGLVAFPTETVFGLGAIANNEAAVQSVFKTKGRPNDNPL 63

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+ I  V  + ASV PL+  L + FWPGPLT++L +  T    P +TA   TA FR+
Sbjct: 64  IIHVASIESVHHYAASVSPLAQALMEKFWPGPLTIILPI-KTGTFAPAATAGQNTAGFRM 122

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177
           P    T  LI+  G PL  PSAN SG+ S T++ H+L     K   ++     ++ IG+E
Sbjct: 123 PDQDQTLALIDKVGFPLVGPSANLSGKPSPTSLAHVLHDFNGKIAGVVANQAELTAIGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD----ETSTPQSPGMLKSHYAPR 233
           ST+V +     + ILRPG + ++ ++ AI V                 SPG+   HY+P+
Sbjct: 183 STVV-LPLADHIEILRPGHVTVDMIEEAIGVPAHVRTAAEQLANQAIMSPGVKYRHYSPK 241

Query: 234 SQVRLRAIHV---NPREALIRFGNV-----------PIKNIENAIISLNLSKTGKLKEAA 279
             V L A      + +E + +F               ++N +  + S +L K G  + A 
Sbjct: 242 QPVYLMAFDHTLEDWQEEIDKFPEAVAILAYQDHITSLQNHQKVVASYSLGKKGDWESAT 301

Query: 280 FNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERAA 319
            +LF  ++  ++S A  +    + P      A  NRL +AA
Sbjct: 302 RHLFAGLRALEESSAKILMVQGLDPKVADHQAYMNRLSKAA 342


>gi|298695390|gb|ADI98612.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 348

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 149/324 (45%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F            E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSYIAFIVPSNKAAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340


>gi|163795817|ref|ZP_02189781.1| Putative translation factor [alpha proteobacterium BAL199]
 gi|159178850|gb|EDP63386.1| Putative translation factor [alpha proteobacterium BAL199]
          Length = 320

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 122/319 (38%), Positives = 173/319 (54%), Gaps = 11/319 (3%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            + D +A  +A   L +G  +A PTETVYGL  D+ +  A+  ++  K RP  NPLI HV
Sbjct: 11  PVDDPDARAEAAGLLRSGALVAFPTETVYGLGADATDEDAVAGIFAAKDRPRFNPLISHV 70

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
                          +  LA   WPGPLT+VL       I  L++A L+T   RVP    
Sbjct: 71  PTADAAFALGQATEAAKRLAATHWPGPLTMVLQRRPGCPIAWLTSAGLETVALRVPGSAA 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + L+   G P+A PSANRSG++S T   H+ +  +   + LI+DGG   +GLEST+V++
Sbjct: 131 ARSLLAEVGRPVAAPSANRSGRVSPTTAAHV-AEELGGRVALILDGGPCPVGLESTVVDL 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             ++  R+LRPG +  E ++  +   ++  V E     +PGML SHYAP++ VRL A   
Sbjct: 190 SGDRP-RLLRPGAVTREQIEALLG-PIDLAV-EGDAITAPGMLASHYAPKAPVRLNATDR 246

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
            P EA + FG         A    +LS +G L  AA  LF  ++  D  G ++IA + +P
Sbjct: 247 RPGEAFLDFGAT------VAGADADLSPSGDLLAAAAKLFAALRALDRPGIAAIAVARVP 300

Query: 304 NHGLGIAINNRLERAAAPR 322
             GLG AIN+RL RAAAPR
Sbjct: 301 VGGLGAAINDRLRRAAAPR 319


>gi|254566675|ref|XP_002490448.1| Protein required for respiratory growth [Pichia pastoris GS115]
 gi|238030244|emb|CAY68167.1| Protein required for respiratory growth [Pichia pastoris GS115]
          Length = 377

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 28/334 (8%)

Query: 12  LRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           L +A   L +    I  PTETVYGL   S N  +++ +Y  K RP  NPLI HV+ +S +
Sbjct: 37  LDEASIILRSHKNCIGFPTETVYGLGASSLNDESVKSIYIAKNRPLDNPLITHVASLSQL 96

Query: 71  KKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +        +  + L L K FWPGPLT++L +   T +  L+TA   T   R+P     
Sbjct: 97  HRKILPPSTKIPDIYLPLIKKFWPGPLTILLPVEDDTTLSRLTTAGQDTFAVRIPNHPVA 156

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI     PLA PSAN S + S T  +H+    +   IPLIIDGG S +GLES++VN  
Sbjct: 157 RALIAISDEPLAAPSANASTRPSPTLAEHVY-HDLQGRIPLIIDGGPSNVGLESSVVNGL 215

Query: 185 CEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
               + +LRPGG+ ++ ++         V  +   + +   ++PGM   HY+P ++V L 
Sbjct: 216 TNPPM-LLRPGGISLKQIQEVGHGWEDIVTAKKTANASEPVRTPGMKYKHYSPTAKVILF 274

Query: 240 AI--------------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                           + N + AL+      I     A  ++       + E A NLF  
Sbjct: 275 VKCGNGVKAVQEALSRYPNSKIALLTGSEFEIPETLQAQFAIVDHLGSSITEMAHNLFAK 334

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++  D +    I    +P+ G G+A+ NRL +AA
Sbjct: 335 LRNLDKNDMDYIFIEGVPDAGEGLALMNRLSKAA 368


>gi|258453174|ref|ZP_05701165.1| translation factor SUA5 [Staphylococcus aureus A5948]
 gi|282923104|ref|ZP_06330789.1| translation factor [Staphylococcus aureus A9765]
 gi|294850086|ref|ZP_06790823.1| translation factor [Staphylococcus aureus A9754]
 gi|304379297|ref|ZP_07362036.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|257859120|gb|EEV81977.1| translation factor SUA5 [Staphylococcus aureus A5948]
 gi|282593295|gb|EFB98292.1| translation factor [Staphylococcus aureus A9765]
 gi|294823034|gb|EFG39466.1| translation factor [Staphylococcus aureus A9754]
 gi|302751997|gb|ADL66174.1| yrdC/SUA5 multi-domain translation factor protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|304342156|gb|EFM08056.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|320140712|gb|EFW32564.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143688|gb|EFW35465.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 357

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 30  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 89

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L  L    +    +  L +   R+P     ++L++
Sbjct: 90  DFTYTLDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 206

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 267 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349


>gi|167648441|ref|YP_001686104.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter sp. K31]
 gi|167350871|gb|ABZ73606.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter sp. K31]
          Length = 296

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 119/303 (39%), Positives = 169/303 (55%), Gaps = 11/303 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           + AG  + +PTETVYGL  D+ NP A+  ++E K RP  NPLI HV+ +    + A +D 
Sbjct: 1   MAAGGLVLLPTETVYGLGADAANPAAVAAIFEAKGRPRFNPLIAHVASLEDAARIAVLDE 60

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
            +L LA  FWPGPLTLV  +     +  L+ A L T   RVP    ++ ++  +G P+  
Sbjct: 61  RALALAAAFWPGPLTLVAPIRDAAAVCDLARAGLDTVAIRVPGHPLSRAVLAAFGGPVVA 120

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG+ S T  +   + +   +  + +DGG  ++GLEST+V V  +   R+LRPG +
Sbjct: 121 PSANRSGRPSPTTFEDAFAET-GDKAAVALDGGPCQVGLESTVVAVL-DGPPRLLRPGAV 178

Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257
               L+  +         E    +SPG L  HYAP + VR+ A      EA + FG  P+
Sbjct: 179 TRAQLEAVVG---PLAEAENDARRSPGRLALHYAPDAPVRIDAARPEAGEAFLAFGPWPM 235

Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                     NLS TG L EAA NLF++++ AD    S+IA ++IP+ GLG AIN+RL R
Sbjct: 236 -----GAGVFNLSPTGDLAEAAANLFSFLRAADRLKPSAIAVAAIPHEGLGEAINDRLRR 290

Query: 318 AAA 320
           AA 
Sbjct: 291 AAG 293


>gi|87162029|ref|YP_494716.1| hypothetical protein SAUSA300_2070 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|151222232|ref|YP_001333054.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|221141635|ref|ZP_03566128.1| hypothetical protein SauraJ_08375 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|262049283|ref|ZP_06022158.1| hypothetical protein SAD30_0494 [Staphylococcus aureus D30]
 gi|262052618|ref|ZP_06024812.1| hypothetical protein SA930_2015 [Staphylococcus aureus 930918-3]
 gi|87128003|gb|ABD22517.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|150375032|dbj|BAF68292.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|259159488|gb|EEW44538.1| hypothetical protein SA930_2015 [Staphylococcus aureus 930918-3]
 gi|259162648|gb|EEW47215.1| hypothetical protein SAD30_0494 [Staphylococcus aureus D30]
 gi|269941715|emb|CBI50122.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|315196950|gb|EFU27292.1| hypothetical protein CGSSa01_03341 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329314801|gb|AEB89214.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724053|gb|EGG60577.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 348

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L  L    +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340


>gi|57652138|ref|YP_186923.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|57286324|gb|AAW38418.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus COL]
          Length = 351

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 24  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 83

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L  L    +    +  L +   R+P     ++L++
Sbjct: 84  DFTYTLDPRVEKLMQAFWPGPISFILP-LKLGYLCRKVSGGLSSVAVRMPSHSVGRQLLQ 142

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 143 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 200

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 201 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 260

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 261 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 319

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 320 YIYGFELNDNTEAIMNRMLKAAGN 343


>gi|148268567|ref|YP_001247510.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394631|ref|YP_001317306.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257793874|ref|ZP_05642853.1| translation factor SUA5 [Staphylococcus aureus A9781]
 gi|258422064|ref|ZP_05684981.1| translation factor SUA5 [Staphylococcus aureus A9719]
 gi|258433567|ref|ZP_05688640.1| translation factor [Staphylococcus aureus A9299]
 gi|258440462|ref|ZP_05690632.1| translation factor [Staphylococcus aureus A8115]
 gi|258445670|ref|ZP_05693848.1| translation factor SUA5 [Staphylococcus aureus A6300]
 gi|258450124|ref|ZP_05698219.1| translation factor SUA5 [Staphylococcus aureus A6224]
 gi|258453421|ref|ZP_05701403.1| translation factor SUA5 [Staphylococcus aureus A5937]
 gi|282894760|ref|ZP_06302986.1| translation factor [Staphylococcus aureus A8117]
 gi|282929040|ref|ZP_06336625.1| translation factor [Staphylococcus aureus A10102]
 gi|295407046|ref|ZP_06816848.1| translation factor [Staphylococcus aureus A8819]
 gi|297246045|ref|ZP_06929902.1| translation factor [Staphylococcus aureus A8796]
 gi|147741636|gb|ABQ49934.1| translation factor SUA5 [Staphylococcus aureus subsp. aureus JH9]
 gi|149947083|gb|ABR53019.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257787846|gb|EEV26186.1| translation factor SUA5 [Staphylococcus aureus A9781]
 gi|257841964|gb|EEV66396.1| translation factor SUA5 [Staphylococcus aureus A9719]
 gi|257849298|gb|EEV73277.1| translation factor [Staphylococcus aureus A9299]
 gi|257852531|gb|EEV76449.1| translation factor [Staphylococcus aureus A8115]
 gi|257855509|gb|EEV78446.1| translation factor SUA5 [Staphylococcus aureus A6300]
 gi|257856598|gb|EEV79504.1| translation factor SUA5 [Staphylococcus aureus A6224]
 gi|257864402|gb|EEV87148.1| translation factor SUA5 [Staphylococcus aureus A5937]
 gi|282589346|gb|EFB94438.1| translation factor [Staphylococcus aureus A10102]
 gi|282762848|gb|EFC02982.1| translation factor [Staphylococcus aureus A8117]
 gi|294968071|gb|EFG44098.1| translation factor [Staphylococcus aureus A8819]
 gi|297177044|gb|EFH36299.1| translation factor [Staphylococcus aureus A8796]
          Length = 357

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 30  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 89

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 90  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNARIDGIVQAEQSEEGLESTVLDCTS-FPY 206

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 267 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 325

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 326 YIYGFELNDNTEAIMNRMLKAAGN 349


>gi|15925106|ref|NP_372640.1| hypothetical protein SAV2116 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927690|ref|NP_375223.1| hypothetical protein SA1918 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156980431|ref|YP_001442690.1| hypothetical protein SAHV_2100 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315785|ref|ZP_04838998.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006904|ref|ZP_05145505.2| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258407042|ref|ZP_05680192.1| translation factor SUA5 [Staphylococcus aureus A9763]
 gi|269203752|ref|YP_003283021.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|296275405|ref|ZP_06857912.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|13701910|dbj|BAB43202.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247889|dbj|BAB58278.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722566|dbj|BAF78983.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257841375|gb|EEV65819.1| translation factor SUA5 [Staphylococcus aureus A9763]
 gi|262076042|gb|ACY12015.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|285817780|gb|ADC38267.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus 04-02981]
 gi|312830468|emb|CBX35310.1| SUA5 domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128787|gb|EFT84787.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329726329|gb|EGG62797.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 348

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNARIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340


>gi|302333762|gb|ADL23955.1| yrdC/SUA5 multi-domain translation factor protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 348

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKGQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITDILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     +   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVAFIPSDAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340


>gi|115443354|ref|XP_001218484.1| protein SUA5 [Aspergillus terreus NIH2624]
 gi|114188353|gb|EAU30053.1| protein SUA5 [Aspergillus terreus NIH2624]
          Length = 434

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 160/376 (42%), Gaps = 81/376 (21%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA--------- 74
           P+A PTETVYGL  D+   +A++ +Y+ K+RP+ NPLI HV  +SM+++           
Sbjct: 56  PVAFPTETVYGLGADATRSSAVQGIYKAKQRPSDNPLIIHVDSLSMLERLLNPVQMSPTR 115

Query: 75  -------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
                  S+ P+   L + FWPGPLT++L   S + +    T+NL T   R+P     + 
Sbjct: 116 ATKTARNSIPPIYHPLIERFWPGPLTILLPNPSGSLLADEVTSNLTTFGVRMPASPLARL 175

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI     PLA PSAN S + S T  +H+    +   I LI+DGG   +G+EST+V+   +
Sbjct: 176 LIHVADRPLAAPSANASTKPSPTTAEHVY-HDLQGRIELILDGGPCGVGVESTVVDGLSD 234

Query: 187 KKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
               ILRPGG+ IE L+     E       +  +D    P++PGM   HY+P+++V L  
Sbjct: 235 PPA-ILRPGGIGIEELRSCAGWENVQVGYHDGTLDVKEVPRAPGMKYRHYSPKARVVLFE 293

Query: 241 IHVNPREALIRF--------------GNVPIKNIENAII--------------------- 265
              + +                    G V  K+ +  +                      
Sbjct: 294 PGSDEKAVAKHVHKDLEDTAIGAHMIGVVRTKHWKRGLGLVSEEEIQKTVKPIPSLVDTL 353

Query: 266 -------------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
                              + +      ++  A  LF  ++  D+     I    I +  
Sbjct: 354 VGFSMPVKDQANGCPAVKEAFDCHLGTDVESIARGLFAALRAMDEMEVDVIYVEGISDTE 413

Query: 307 --LGIAINNRLERAAA 320
             L  A+ NRL +AA 
Sbjct: 414 GDLAAAVMNRLRKAAG 429


>gi|121698888|ref|XP_001267839.1| translation initiation protein Sua5 [Aspergillus clavatus NRRL 1]
 gi|119395981|gb|EAW06413.1| translation initiation protein Sua5 [Aspergillus clavatus NRRL 1]
          Length = 433

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/396 (26%), Positives = 171/396 (43%), Gaps = 82/396 (20%)

Query: 5   SITDSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
              +++A+ +A + L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H
Sbjct: 35  KTPEASAIEEAAQLLQTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVH 94

Query: 64  VSDISMVKKHA----------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL 107
           V  + M+++                  S+  +   L + FWPGPLT++L   S + +   
Sbjct: 95  VDSLEMLERLLNPAPMSPTRAMKTARHSIPAIYRPLIERFWPGPLTILLPNPSGSLLADE 154

Query: 108 STANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            TANL T   RVP     + LI     PLA PSAN S + S T  +H+    +   I LI
Sbjct: 155 VTANLTTFGVRVPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLQGRIELI 213

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTP 220
           +DGG+  +G+EST+V+        +LRPGG+ IE ++     E       +  +D    P
Sbjct: 214 LDGGLCGVGVESTVVDGLSNPPA-VLRPGGVGIEEIRAVPGWENVQVAYQDGTLDVKEIP 272

Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREAL------------------------------- 249
           ++PGM   HY+P+++V L     +                                    
Sbjct: 273 RAPGMKYRHYSPKARVVLFDAGSHEEYVAKYILKDLEDTAVGVHMIGVVRTRQWKRGLGL 332

Query: 250 -----IRFGNVPIKNIENAII------------------SLNLSKTGKLKEAAFNLFNYM 286
                I+    PI ++ N ++                  + +      ++  A  LF+ +
Sbjct: 333 VSEENIQKTLKPIPSLANDLVGFSVPVKDRVKNREITKEAFDCCLGDSMESIARGLFSAL 392

Query: 287 KIADDSGASSIAFSSIPN--HGLGIAINNRLERAAA 320
           +  D+     I    + +    L  A+ NRL +AA 
Sbjct: 393 RAMDEMEVDVIYVEGVSDSQGDLAAAVMNRLRKAAG 428


>gi|16127620|ref|NP_422184.1| Sua5/YciO/YrdC family protein [Caulobacter crescentus CB15]
 gi|221236437|ref|YP_002518874.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter crescentus NA1000]
 gi|13425098|gb|AAK25352.1| Sua5/YciO/YrdC family protein [Caulobacter crescentus CB15]
 gi|220965610|gb|ACL96966.1| Sua5/YciO/YrdC/YwlC family protein [Caulobacter crescentus NA1000]
          Length = 325

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/304 (39%), Positives = 168/304 (55%), Gaps = 11/304 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  + +PTETVYGL  ++ +P A+  ++E K RP  NPLI HV+D+    + A  D 
Sbjct: 30  LRAGGLVILPTETVYGLGANAADPAAVAAIFEAKGRPRFNPLIAHVADLETAARIAVFDD 89

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
            +  LA+ FWPGPLT+V  +     +  L+ A L T   RVP    ++ ++  +G  +  
Sbjct: 90  RAHALAREFWPGPLTIVAPIRDPEAVCDLARAGLDTVAIRVPGHPLSRAVLAAFGGAVVA 149

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSANRSG+ S T     ++ +   +    +DGG   +GLEST+V+V  E +VR+LRPG +
Sbjct: 150 PSANRSGRPSPTTYDDAMAET-GDKAAAHLDGGPCAVGLESTVVSVL-EGEVRLLRPGAV 207

Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257
               L++ +    E   D     +SPG L  HYAP + VR+ A      EA + FG  P 
Sbjct: 208 TRVQLQQIVGRLAEAQDDAK---RSPGRLALHYAPDAPVRINAKTPEAGEAYLAFGPWP- 263

Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                +    NLS TG L EAA NLF +++ AD    S+IA + IP  GLG AIN+RL R
Sbjct: 264 ----ESPRVFNLSPTGDLAEAAANLFAFLRAADRIRPSAIAVAPIPEEGLGEAINDRLRR 319

Query: 318 AAAP 321
           AA  
Sbjct: 320 AAGY 323


>gi|164427896|ref|XP_001728416.1| hypothetical protein NCU11234 [Neurospora crassa OR74A]
 gi|157071926|gb|EDO65325.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 449

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 169/391 (43%), Gaps = 84/391 (21%)

Query: 12  LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +R+A   L    +P+A PTETVYGL  D+    A++ +Y  K RP+ NPLI HV D+SM+
Sbjct: 57  IREAAHHLRTTDIPVAFPTETVYGLGADATRSAAVKGIYAAKGRPSDNPLIVHVCDLSML 116

Query: 71  KKHAS------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           +   S            +  +   L   FWPGPLT++L   S + + P  TA L T   R
Sbjct: 117 RSFISPSFSSAGDEEDPIPAIYHPLITRFWPGPLTILLPNPSPSLLAPEVTAGLPTFGCR 176

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P     + LI+    PLA PSAN S + S T  +H+L   +   I LI+DGG   +G+E
Sbjct: 177 MPASALARSLIKLANAPLAAPSANASTKPSPTAAQHVL-DDLRGRIALILDGGSCSVGVE 235

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE-------LEYCVDETSTPQSPGMLKSHY 230
           ST+V+  C   V +LRPGG+ +E ++     E        +  V   + P++PGM   HY
Sbjct: 236 STVVDGLCSPPV-VLRPGGVSLEEIRECKGWEGVEKAYKDQAEVGGKTAPRAPGMKYKHY 294

Query: 231 APRSQVRLRAIHVNPRE-------------------------ALIRFGNVPIKNI--ENA 263
           +P+++V L       RE                         A+IR G  P+        
Sbjct: 295 SPKARVVLYEAEGGRREVPKADVREAVEAAGEEEGKGNVKSVAVIRTGRWPVAGGLRSQG 354

Query: 264 IISLNLSKTGKLKE---------------------------------AAFNLFNYMKIAD 290
           +  +    +G + E                                  A  LF  ++  D
Sbjct: 355 LDDVAAKDSGDVAETGFAVREGQWLDEDGTTVLARLLEIDLGNDVKGVAHGLFAALRELD 414

Query: 291 DSGASSIAFSSIPN-HGLGIAINNRLERAAA 320
             GA  I    + +   +  A+ NRL +AA+
Sbjct: 415 RRGADVIFVEGVSDGDDIAAAVMNRLRKAAS 445


>gi|87198152|ref|YP_495409.1| translation factor SUA5 [Novosphingobium aromaticivorans DSM 12444]
 gi|87133833|gb|ABD24575.1| translation factor SUA5 [Novosphingobium aromaticivorans DSM 12444]
          Length = 315

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 119/314 (37%), Positives = 178/314 (56%), Gaps = 12/314 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ L  A + + AG  +A+PTETVYGLA  + +  A+  +Y  K RP  NPLI HV D+
Sbjct: 13  DNHGLEHAAQVIAAGGTVAVPTETVYGLAARADDDAAVAGIYRAKGRPDFNPLIVHVPDV 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +  +  A  D  +  LA  FWPGPLT+VL       +    +A L T   R P     + 
Sbjct: 73  TAAEGLAVFDKRARALANAFWPGPLTMVLPRREGAALASAVSAGLPTVALRCPAHPVMQA 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G PLA PSANRSG +S T+  H+ ++S+ + + LI+DGG ++ G+ESTIV ++ +
Sbjct: 133 LLKNCGLPLAAPSANRSGGVSPTSAAHV-AASLGQRVDLILDGGETRQGIESTIVGMRDD 191

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
               ILRPG +   ++   +  + +     ++  ++PG L SHYAP   VRL A      
Sbjct: 192 GTWAILRPGPITEASIAAVLGGKSDVVT--SAKIEAPGQLASHYAPGKPVRLNATQAGEG 249

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           E LI FG+V        +  +NLS +G L EAA  L++ + +   +   +IA + IP+ G
Sbjct: 250 EFLIGFGSV--------VGDVNLSTSGDLAEAAARLYSCLHLGAAASEPAIAVAPIPDEG 301

Query: 307 LGIAINNRLERAAA 320
           +G AIN+RL RAAA
Sbjct: 302 IGTAINDRLRRAAA 315


>gi|283471333|emb|CAQ50544.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 348

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 149/324 (45%), Gaps = 18/324 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 21  INELKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKDQLK 80

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++D     L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 81  DFTYTLDARVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 140 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAEQSEEGLESTVLDCTS-FPY 197

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 198 KIARPGSITAAMITDILPNSITHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 257

Query: 243 VNPREALIRF----GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI 297
                + I F      V     E   I L       +K+A+ NL++ +   D+    S+ 
Sbjct: 258 DGKDWSSIAFIVPSNKVTFIPSEAQFIQL-CQDDNDVKQASHNLYDVLHSLDENENISAA 316

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
                  +    AI NR+ +AA  
Sbjct: 317 YIYGFELNDNTEAIMNRMLKAAGN 340


>gi|325982712|ref|YP_004295114.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212]
 gi|325532231|gb|ADZ26952.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212]
          Length = 346

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 103/331 (31%), Positives = 158/331 (47%), Gaps = 19/331 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S    + +  A + L  G  +A PTETVYGL  D  NP AI ++Y+IK+RP  +PLI H
Sbjct: 13  LSSVQRDQITAAAQILRTGGTVAFPTETVYGLGADVTNPIAIDKIYKIKQRPTHHPLIVH 72

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + +IS +   A  +   +  LA  FWPGPLTL+L    +  I    T    T   R P  
Sbjct: 73  IGNISHLHYWAKAIPDSAWKLAHHFWPGPLTLILPR--SDRIPDNVTGGQDTVGIRFPAH 130

Query: 123 -FTKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                L+   G    LA PSANR G+IS T   H+    +   + +I+DGG   +GLEST
Sbjct: 131 PVALALLRALGPEKALAAPSANRFGRISPTLAAHV-HQELGNVVDMILDGGACDVGLEST 189

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRL 238
           I++   +   +ILRPG + +  L+ A++  +           ++ G L +HYAP + +R+
Sbjct: 190 ILSFH-DGIPQILRPGSITLSELEAALNSPVILAHHINNQLIRTSGSLPAHYAPTTPLRV 248

Query: 239 RAIHVNPREALI------RFGNVPIKNIENAIISLNL----SKTGKLKEAAFNLFNYMKI 288
            +     + A I      R   +   NI+    S  L    S           L+  ++ 
Sbjct: 249 YSNTQIWQHAFILAAKNLRVLVITWSNIDKPKFSNQLIEQFSMPEDPVAYGQQLYAKLRQ 308

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            D +    +   S P+H   +AI +RL+RA+
Sbjct: 309 FDQAEFDYMLIESPPDHPNWLAIADRLQRAS 339


>gi|237745647|ref|ZP_04576127.1| translation factor SUA5 [Oxalobacter formigenes HOxBLS]
 gi|229376998|gb|EEO27089.1| translation factor SUA5 [Oxalobacter formigenes HOxBLS]
          Length = 344

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +++ +  A   L++G  +A PTETVYGL  D+ NP A+  +Y +K RPA +PLI HV+
Sbjct: 1   MKNADDILAAARILESGRLVAFPTETVYGLGGDAENPAAVAAIYALKNRPASHPLIVHVA 60

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
             S +   +  +   +  L   FWPGPLTL+L   S   + P       +   R P    
Sbjct: 61  SGSDIAYWSDRIPDEARKLMAAFWPGPLTLILKRASH--VLPDVAGGQDSVGLRCPSHPV 118

Query: 125 KKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLEST 179
            + +    +     +A PSANR G +S T  +H+         +  I+DGG S++G+EST
Sbjct: 119 AQALLGLFKQGRGGVAAPSANRFGHVSPTMAQHVRDEFGDDPRLGAILDGGQSEVGIEST 178

Query: 180 IVNVQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           I+++        V +LRPG +    +   I   +   V +   P++ G L SHYAPR+ V
Sbjct: 179 ILDLSRIETAGPV-LLRPGKIGASQIAEVIG--MMPKVPDNGAPRASGTLASHYAPRTPV 235

Query: 237 -----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                       +R      R AL+ + ++P     +    + L     +   +  L+  
Sbjct: 236 AVIPSDKLLQLLVRLEENGHRVALLHYSSLPASRKMSLAGEVGLYCAPDV--YSHQLYAS 293

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++  D SGA  I   + P       +N+RL+RAA
Sbjct: 294 LRKLDRSGADVILVEATPETETWKGVNDRLKRAA 327


>gi|213410030|ref|XP_002175785.1| SUA5/yciO/yrdC family protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212003832|gb|EEB09492.1| SUA5/yciO/yrdC family protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 402

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 167/368 (45%), Gaps = 54/368 (14%)

Query: 3   IMSITDSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           I S     AL +A   L      +A PTETVYGL  D+R   A+  +Y+ K RPA NPLI
Sbjct: 33  IHSKETEIALEEASSILHQKDGIVAFPTETVYGLGADARKSEAVLNIYKAKNRPADNPLI 92

Query: 62  CHVSDISMVKKHAS----------------VDPLSLH-LAKLFWPGPLTLVLDLLST--T 102
            H+  +  + +                     PL    L   +WPGP++++L +  T  +
Sbjct: 93  THIGSLKQLSELIDSTTQKNKLKGDSGLWENIPLVYKPLIDRYWPGPMSILLPIEGTEGS 152

Query: 103 DIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161
            +  + TA   T   R+P       LI     PLA PSAN S + S T   H+    +  
Sbjct: 153 PVSKVVTAGQSTFAVRMPEHPVALALILKSKAPLAAPSANASTRPSPTLAAHVF-HDLNG 211

Query: 162 EIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV--------ELEYC 213
           ++PLI+DGG   +GLEST+VN  C+  V ILRPGG+ +E ++    V          +  
Sbjct: 212 KLPLILDGGPCGVGLESTVVNGLCDPPV-ILRPGGISLEDIQSCGGVWSRTVVYKPTDDV 270

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVN--------------------PREALIRFG 253
             ++  PQ+PGM   HY+P ++V L                          P+  ++   
Sbjct: 271 EKKSFVPQTPGMKYRHYSPTAKVLLFEGMSEAEANDILQNDYLHANQNTKPPKIGVLTSC 330

Query: 254 NVPIKNIENAI-ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
              ++   + + +S+ L +TG  KE   NLF+ ++  D+     I    + +   G+AI 
Sbjct: 331 RWNVEKFSDMVSVSMCLGRTG--KEIRRNLFSMIRDMDEKQIDIILVEGVESDHEGLAIM 388

Query: 313 NRLERAAA 320
           NRL +AA+
Sbjct: 389 NRLGKAAS 396


>gi|48478016|ref|YP_023722.1| Sua5 superfamily-related protein [Picrophilus torridus DSM 9790]
 gi|48430664|gb|AAT43529.1| Sua5 superfamily-related protein [Picrophilus torridus DSM 9790]
          Length = 337

 Score =  293 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/329 (28%), Positives = 154/329 (46%), Gaps = 14/329 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++   D + ++ A + +  G  +  PTETVYGL  ++ +  A  +++  K RPA NPL
Sbjct: 1   MTLVLKPDDSGIKIAADIIRKGGTVVFPTETVYGLGANALSSEASAKIFRAKDRPADNPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I  VS+ +MVK  + +D   L + +  WP PLTL+L     + +  + TA + T C R P
Sbjct: 61  IVTVSNFNMVKDVSYIDCKLLKIMEGVWPAPLTLLL--KKKSIVPDIVTAGMDTVCVRFP 118

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 +LI   G P+A PSAN + + SI + K  +   +   +  IID G  + G+EST
Sbjct: 119 KNEIALRLISEAGVPVAAPSANIATRPSIVDSKDAI-DELDGRVDAIIDAGRVEYGVEST 177

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           I++   E    +LRPG   +E ++R         +     E++   +PGM   HYAP  +
Sbjct: 178 IIDATVE-PYNLLRPGAFPVEEIERLFGKININPVARGYKESNIALTPGMKYRHYAPSKK 236

Query: 236 VRLRAIHVNPREALI-----RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
           + L     + R  +       F  +        +    +       EAA NLF   ++ D
Sbjct: 237 LILIENIDDFRSFVSSDRARDFLALCSSENSKYVKYDKIILGRDAYEAAHNLFYDFRLLD 296

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319
            S        + P  G+G  + NR+ +A+
Sbjct: 297 RSDKQYGVIQAFPETGIGFGLMNRIRKAS 325


>gi|323439335|gb|EGA97059.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O11]
 gi|323442456|gb|EGB00085.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O46]
          Length = 357

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 16/323 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + +  G  I +PTETVYGLA ++ +  A+ ++YE K RP+ NPLI H+     +K
Sbjct: 30  INEIKDIVLNGGLIGLPTETVYGLAANATDEEAVAKIYEAKGRPSDNPLIVHIHSKVQLK 89

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
               ++DP    L + FWPGP++ +L L     +    +  L +   R+P     ++L++
Sbjct: 90  DFTYTLDPRVEKLMQAFWPGPISFILPLKPGY-LCRKVSGGLSSVAVRMPSHSVGRQLLQ 148

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA PSAN SG+ S T   H+    +   I  I+    S+ GLEST+++       
Sbjct: 149 IINEPLAAPSANLSGRPSPTTFNHVY-QDLNGRIDGIVQAKQSEEGLESTVLDCTS-FPY 206

Query: 190 RILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL------RAIH 242
           +I RPG +    +   +   + +   ++T  P +PGM   HY+P + + +      +  +
Sbjct: 207 KIARPGSITAAMITEILPNSIAHADYNDTEQPIAPGMKYKHYSPNTPLTIITDIESKIGN 266

Query: 243 VNPREALIRFGNVPIKN--IENAIISLNLS-KTGKLKEAAFNLFNYMKIADD-SGASSIA 298
                + I F     K   I +    + L      +K+A+ NL++ +   D+    S+  
Sbjct: 267 DGKDWSSIAFIVPSNKAAFIPSEAHFIQLCQDDNDVKQASHNLYDVLHSLDENENISAAY 326

Query: 299 FSSIPNHGLGIAINNRLERAAAP 321
                 +    AI NR+ +AA  
Sbjct: 327 IYGFDLNDNTEAIMNRMLKAAGN 349


>gi|313891812|ref|ZP_07825417.1| Sua5/YciO/YrdC/YwlC family protein [Dialister microaerophilus UPII
           345-E]
 gi|313119806|gb|EFR42993.1| Sua5/YciO/YrdC/YwlC family protein [Dialister microaerophilus UPII
           345-E]
          Length = 345

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 109/341 (31%), Positives = 156/341 (45%), Gaps = 25/341 (7%)

Query: 1   MQIMSIT-----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
           M+   I       S+ + K    +  G  +A PTETVYGL  ++ +  A +++Y+ K RP
Sbjct: 1   MKTKKINVNKKYYSDLVNKLGYIIRKGGLVAFPTETVYGLGGNALSSKAAKKIYKAKGRP 60

Query: 56  AMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           + NPLI HV+D S VK     ++ L   L  L+WPGPLT+V +      I   ++  L T
Sbjct: 61  SDNPLIVHVADKSQVKNFVKNINDLEHKLMDLYWPGPLTIVFE--KKDIIPYETSGGLDT 118

Query: 115 ACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R P     + LI     PLA PSAN S + S T  K +L+  +   I  +ID G SK
Sbjct: 119 VAIRCPDNNATRALIRAAKVPLAGPSANISTRPSPTYAKSVLND-LDGRINAVIDNGDSK 177

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE-TSTPQSPGMLKSHYAP 232
           IGLESTIV V  E K+ I RPG +  E L       L+  + +    P++PGM   HYAP
Sbjct: 178 IGLESTIVAV-NEGKIIIYRPGAITQEMLSELAPTSLDTALKKSNEKPKAPGMKYRHYAP 236

Query: 233 RSQVR-------------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279
            + +              L   + N +           + +    I     K    K  A
Sbjct: 237 SAPLEIYVGNENKVEESILEVSNENDKIYGFFVSKETAEKLPKNSIVFCWGKRSDKKSMA 296

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  +   +      I      N G+G+AI NRL++A+ 
Sbjct: 297 RNLFKGLLFFNSQKIDQIIGEGTDNKGIGMAIMNRLKKASG 337


>gi|56475496|ref|YP_157085.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1]
 gi|56311539|emb|CAI06184.1| putative translation factor (SUA5) [Aromatoleum aromaticum EbN1]
          Length = 351

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 107/347 (30%), Positives = 164/347 (47%), Gaps = 36/347 (10%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +      N +R+A   L AG  + +PTETVYGLA D+ N  A+ +++  K RPA +PLI 
Sbjct: 6   VAPAIPDNEIRRAAGLLHAGELVGMPTETVYGLAADALNVAAVGKIFAAKGRPADHPLIV 65

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H+ D   + + A  +   +  LA+ FWPGPLTL+L    +  +    T    T   RVP 
Sbjct: 66  HLPDAGHLARWAREIPDDAFALARAFWPGPLTLILKRQHS--VPDALTGGQDTVGLRVPD 123

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L++T+   +A PSANR G+IS T  +H+    +  +I LI+DGG   +G+ESTI
Sbjct: 124 HPVALALLQTFDSGIAAPSANRFGRISPTTAEHV-RQELGDKIALILDGGPCVVGIESTI 182

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETST------------PQSPGM 225
           +++  +   +ILRPG +  E + R I            E S             P+  G 
Sbjct: 183 LDLSRDTP-QILRPGAISAEDIARVIGCPPRSRPIPTGEASAGDHRDGATGDGEPRVSGS 241

Query: 226 LKSHYAPRSQVRLRAIHV-----------NPREALIRFGNVPIKNIENAIISLNLSKTGK 274
           L +HYAPR+ +++ A                R A++ +G    ++      +  L   G 
Sbjct: 242 LSAHYAPRTPLQMTAASQLAELAATLAAEGSRVAVLAYGCQDPQDARLIWRAAPLDAAG- 300

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
               A  L+  ++  D  GA  I   + P      A+N+RL RAAA 
Sbjct: 301 ---YAHALYANLRDLDACGADFIVVETPPATPDWQAVNDRLRRAAAG 344


>gi|294940148|ref|XP_002782688.1| sua5, putative [Perkinsus marinus ATCC 50983]
 gi|239894568|gb|EER14483.1| sua5, putative [Perkinsus marinus ATCC 50983]
          Length = 356

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 111/337 (32%), Positives = 167/337 (49%), Gaps = 29/337 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + L +A E L  G  +A PTETVYGL  ++ +  A+  +Y+ K RP+ NPLI H +  
Sbjct: 22  EKHKLIRAGELLREGELVAFPTETVYGLGANALSDEAVAGIYQAKGRPSDNPLIVHTTCA 81

Query: 68  SMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +   + +    DP+++ LAK FWPGPLT+VL + S + I    TA L T   RVP     
Sbjct: 82  ADALRLSQTPEDPIAVKLAKTFWPGPLTMVLPVGSNSGIAKRVTAGLDTVGLRVPSHPVA 141

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC------KEIPLIIDGGISKIGLES 178
             +IE  G P+A PSAN SG+ S T   H+            KE+ +I+DGG    G+ES
Sbjct: 142 HAVIEAAGVPIAAPSANTSGKPSPTEAFHVYEDMEHNADAGRKEVSMIVDGGACDHGVES 201

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQSPGMLKSHYAPRS 234
           T+V +     V ILRPG + +E L+  +     V++   +     P++PGM   HYAP++
Sbjct: 202 TVVRIMDSSHVVILRPGAVTLEQLRACLEGMAVVDIPKPLAGAECPRAPGMKYRHYAPQA 261

Query: 235 QVRLRAIHV---------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
            V L               P   +I F ++ +    N     +L     L  A   +F+ 
Sbjct: 262 MVDLVYDKDEILREAALSEPHTVVIAFDDLNL----NGARVRSLGPRSDLSVACHRIFSL 317

Query: 286 MKIADDS-GASSIAF-SSIPN-HGLGIAINNRLERAA 319
            +  DDS  A  I   +      G+G A+ NR+E+A+
Sbjct: 318 FRECDDSLHAKRIVLDARFDQTTGIGRALFNRIEKAS 354


>gi|307294299|ref|ZP_07574143.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880450|gb|EFN11667.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobium chlorophenolicum
           L-1]
          Length = 318

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 136/313 (43%), Positives = 185/313 (59%), Gaps = 12/313 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S ALR+A   + AG P+A+PTETVYGLA D+ +  A+  +Y  K RP+ NPLI HVSD  
Sbjct: 17  SEALREAALLIRAGEPVAVPTETVYGLAADATDSNAVAAIYTAKGRPSFNPLIVHVSDRE 76

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
           M  + A   P++  LA  FWPG LTLVL + + + + PL  A L T   R+P     + L
Sbjct: 77  MAGRLAEFSPVADRLADRFWPGALTLVLPVRADSGLSPLVMAGLPTVALRLPAHPAMRAL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PLA PSANRSG IS T  +H+L +S+  +I +I+D G +  GLESTI   + + 
Sbjct: 137 IRESGRPLAAPSANRSGSISPTRAEHVL-ASLNGKIRMILDEGPTSEGLESTIAAPESD- 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           ++R+LRPG +    L+ A  + +    D     ++PG L+SHYAP   VRL A+     E
Sbjct: 195 RIRLLRPGPVTAAMLEEASRLPVVAGAD-NGKIEAPGQLESHYAPSKPVRLNALKAEKDE 253

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            LI FG +P          +NLS    L+EAA +LF  + +AD S A  IA + I N G+
Sbjct: 254 YLIGFGLMPCH--------VNLSPDADLREAAAHLFAALHMADASTAERIAVAPILNEGI 305

Query: 308 GIAINNRLERAAA 320
           G+AIN+RL RAAA
Sbjct: 306 GVAINDRLRRAAA 318


>gi|50302405|ref|XP_451137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640268|emb|CAH02725.1| KLLA0A03135p [Kluyveromyces lactis]
          Length = 404

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 104/364 (28%), Positives = 164/364 (45%), Gaps = 53/364 (14%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T+ N L  A    D    +A PTETVYGL   + N  +++ +Y+ K RP+ NPLI H+S 
Sbjct: 40  TEKNLLEAAGIIRDTSETVAFPTETVYGLGGSALNDESVKNIYKAKNRPSDNPLITHISS 99

Query: 67  ISMV------------KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTAN 111
           +S +            K  + V  +   L +  WPGPLT++L +   ++   +  L+TAN
Sbjct: 100 LSQLNRVIYSDISDDCKPLSHVPEIYHPLVEKLWPGPLTILLSIPDGSNRNTLSKLTTAN 159

Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             T   R+P     + LI     P+A PSAN S + S T  +H+    +   IPLI+DGG
Sbjct: 160 QPTFACRIPANPIARALIALSDTPIAAPSANASTRPSPTTAEHVF-HDLNGRIPLILDGG 218

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCVDETSTPQSP 223
              +G+EST+V+      + +LRPGG   E +            VE +  + +    ++P
Sbjct: 219 KCSVGVESTVVDGLVTPPM-LLRPGGFTYENILNIGGPLWKECLVETKVNIKDDEKVKTP 277

Query: 224 GMLKSHYAPRSQVRLRAIHVN-------------------------PREALIRFGNVPIK 258
           GM   HY+P+++V L     +                          + A +   ++   
Sbjct: 278 GMKYRHYSPKAKVILLVPEGDSQIISSERLGRLKSLVDKEIIQQGAKKVAFLNSLHLNKH 337

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLER 317
            I+   I  +L  TG  KE   NLF  ++  D+      I       +  G+AI NRL +
Sbjct: 338 FIDGKCIHESLGTTG--KEIQANLFALLRKVDEEDNVDLIVVEGTEANEEGLAIMNRLRK 395

Query: 318 AAAP 321
           AA+ 
Sbjct: 396 AASN 399


>gi|224477104|ref|YP_002634710.1| hypothetical protein Sca_1619 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421711|emb|CAL28525.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 348

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 91/332 (27%), Positives = 152/332 (45%), Gaps = 15/332 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ S     A+ +  E    G  +AIPTETVYGL  ++++   ++++YE K RP+ NPLI
Sbjct: 12  EVDSPNAKAAIEEIAEVYREGELVAIPTETVYGLGANAKDDATVKKIYEAKGRPSDNPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+ D + +      +   +  L  +FWPGP++ +L L     +    +  L +   R+P
Sbjct: 72  VHIYDEAQMDDFITEIPEKAQQLMDVFWPGPISFILPLKEGF-LCKRVSGGLSSIAVRMP 130

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + +++    P+A PSAN SG+ S T  +H+ +  +  ++  I++G  S+ GLEST
Sbjct: 131 SHPVGRAILKAVRLPIAAPSANLSGRPSPTTFEHV-NHDLNGKVAGIVNGDQSEEGLEST 189

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +++   +   RI RPG +  E +++ I   ++   V  T  P +PGM   HY+P + V +
Sbjct: 190 VLDCT-QYPFRIARPGAITAEMIEQVIPGSIDTDSVLNTDKPIAPGMKYKHYSPDTPVAM 248

Query: 239 -------RAIHVNPREALIRFGNVPIKNIENAIISLNLS-KTGKLKEAAFNLFNYMKIAD 290
                       N    L        K I    +   LS     LK A  NL+  +   D
Sbjct: 249 LTNLNTAITSQNNWESTLFAVPATLRKYIPENAVYRELSVDETDLKNANHNLYQILHELD 308

Query: 291 -DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            D+                 A  NRLE+A   
Sbjct: 309 TDTNIEQGYIFKFDKTDESNAFLNRLEKATGN 340


>gi|329121079|ref|ZP_08249710.1| Sua5/YciO/YrdC/YwlC family protein [Dialister micraerophilus DSM
           19965]
 gi|327471241|gb|EGF16695.1| Sua5/YciO/YrdC/YwlC family protein [Dialister micraerophilus DSM
           19965]
          Length = 345

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 109/341 (31%), Positives = 156/341 (45%), Gaps = 25/341 (7%)

Query: 1   MQIMSIT-----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
           M+   I       S+ + K    +  G  +A PTETVYGL  ++ +  A +++Y+ K RP
Sbjct: 1   MKTKKINVNKKYYSDLVNKLGYIIRKGGLVAFPTETVYGLGGNALSSKAAKKIYKAKGRP 60

Query: 56  AMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           + NPLI HV+D S VK     ++ L   L  L+WPGPLT+V +      I   ++  L T
Sbjct: 61  SDNPLIVHVADKSQVKNFVKNINDLEHKLMDLYWPGPLTIVFE--KKDIIPYETSGGLDT 118

Query: 115 ACFRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R P     + LI     PLA PSAN S + S T  K +L+  +   I  +ID G SK
Sbjct: 119 VAIRCPDNNATRALIRAAKVPLAGPSANISTRPSPTYAKSVLND-LDGRINAVIDNGDSK 177

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE-TSTPQSPGMLKSHYAP 232
           IGLESTIV V  E K+ I RPG +  E L       L+  + +    P++PGM   HYAP
Sbjct: 178 IGLESTIVAV-NEGKIIIYRPGAITQEMLSELAPTSLDTALKKSNEKPKAPGMKYRHYAP 236

Query: 233 RSQVR-------------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279
            + +              L   + N +           + +    I     K    K  A
Sbjct: 237 SAPLEIYVGNENKVEESILEVSNENDKIYGFFVSKETAEKLPKNSIVFCWGKRSDKKSMA 296

Query: 280 FNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            NLF  +   +      I      N G+G+AI NRL++A+ 
Sbjct: 297 RNLFKGLLFFNSKKIDQIIGEGTDNKGIGMAIMNRLKKASG 337


>gi|254582671|ref|XP_002499067.1| ZYRO0E02882p [Zygosaccharomyces rouxii]
 gi|238942641|emb|CAR30812.1| ZYRO0E02882p [Zygosaccharomyces rouxii]
          Length = 414

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 160/373 (42%), Gaps = 59/373 (15%)

Query: 3   IMSITDSNALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           I        L +A + +     P+A PTETVYGL   S +  A++ +Y  K RP+ NPLI
Sbjct: 40  ITDPISEKNLLEAAKIIRGNLEPVAFPTETVYGLGGSSLSDEAVKSIYRAKNRPSDNPLI 99

Query: 62  CHVSDISMVKK----------HASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTA 110
            HVS I  + +            ++      L    WPGPLT++L + L T+ +  L+TA
Sbjct: 100 THVSSIDQLNRKIYQEKHSSLFQNIPNSYHPLISKLWPGPLTILLPVPLKTSALSKLTTA 159

Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +  T   R+P     + LI     P+A PSAN S + S T   H+    +   IPLI+DG
Sbjct: 160 DQPTFAVRIPSNPIARALIALSDTPIAAPSANASTRPSPTMASHVY-HDLKGRIPLILDG 218

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCVDETSTPQS 222
           G  K+G+EST+V+   +  + +LRPGG   E +            VE    V E    ++
Sbjct: 219 GPCKVGVESTVVDGLSKPPL-LLRPGGFTYEQIVELGGQDWKDCRVERRKVVAEGEQVRT 277

Query: 223 PGMLKSHYAPRSQVRL-----------------------------RAIHVNPREALIRFG 253
           PGM   HYAP ++V L                               I        +  G
Sbjct: 278 PGMKYKHYAPSAKVILLVPKPQRTDSDRIEELKRLISQELQNEDANTIKKLAILTSLHLG 337

Query: 254 NVPIKNIENAI-----ISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGL 307
              I+++         I + L  TG  +E   NLF  ++  D+    + I    I     
Sbjct: 338 ATEIQDLTVGDSKIKPIVVKLGNTG--EEIQANLFAALRQVDEIDNVNLIFVEGISEDRE 395

Query: 308 GIAINNRLERAAA 320
           G+AI NRL +AA 
Sbjct: 396 GLAIMNRLRKAAG 408


>gi|229515463|ref|ZP_04404922.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
 gi|229347232|gb|EEO12192.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
          Length = 328

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/323 (28%), Positives = 162/323 (50%), Gaps = 11/323 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R+ 
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245

Query: 240 AI--HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
            +  +       I+   + +  ++ +   L        K     L+  +   D  G   I
Sbjct: 246 DVLENELATAGNIKIALLHLSELQASEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVDEI 305

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P     +A+++RL RAA+
Sbjct: 306 WLERPPQGEAWLAVHDRLRRAAS 328


>gi|156845519|ref|XP_001645650.1| hypothetical protein Kpol_541p35 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116316|gb|EDO17792.1| hypothetical protein Kpol_541p35 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 422

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 162/381 (42%), Gaps = 63/381 (16%)

Query: 2   QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +I       AL +A   +      +A PTETVYGL   S N  ++  +Y+ K RP+ NPL
Sbjct: 39  KITDPETEAALLEAASIIRDTDNVVAFPTETVYGLGGSSLNDKSVLNIYKAKNRPSDNPL 98

Query: 61  ICHVSDISMVKK---------------HASVDPLSLHLAKLFWPGPLTLVLDLLS--TTD 103
           I HVS I  + +                +++ P+  +L    WPGPLT++L +      +
Sbjct: 99  ISHVSSIDQLNRKIYNNVSETNNPKSLLSNIPPIYHNLISKLWPGPLTILLPVPKEGNGN 158

Query: 104 IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
           +  L+T N  T   R+P     + LI     P+A PSAN S + S T   H+    +  +
Sbjct: 159 LSKLTTVNQPTFAVRIPSHPVARALIALSDTPIAAPSANASTRPSPTLASHVF-HDLNTK 217

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVD 215
           IPLI+DGG   +G+EST+++  C     +LRPGG   E +        ++  VE +  V 
Sbjct: 218 IPLILDGGACSVGVESTVIDGLCNPPA-LLRPGGFTYEQIVHLGGESWKSCKVENKKTVL 276

Query: 216 ETSTPQSPGMLKSHYAPRSQVRLRA----------------IHVNPREALIRFGNVPIKN 259
           +    ++PGM   HY+P ++V L                  I    ++         + +
Sbjct: 277 KGEKVRTPGMKYRHYSPSAKVVLLVPSSPFNENTYLEKISRIISEEKDKTNVKKVAVLTS 336

Query: 260 IENAIISLNLSKTGKL------------------KEAAFNLFNYMKIADD-SGASSIAFS 300
           ++ A I   LS  G                     E   NLF  ++  D+      I   
Sbjct: 337 LKLATIHSKLSNLGSYLNKADGIEINVQNLGNNGTEIQSNLFATLRTVDEVDNVDLILVE 396

Query: 301 SIPNHGLGIAINNRLERAAAP 321
            I     G+A+ NRLE+AA  
Sbjct: 397 GIEEDEEGLAVMNRLEKAAGG 417


>gi|119480771|ref|XP_001260414.1| translation initiation protein Sua5 [Neosartorya fischeri NRRL 181]
 gi|119408568|gb|EAW18517.1| translation initiation protein Sua5 [Neosartorya fischeri NRRL 181]
          Length = 433

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 103/396 (26%), Positives = 166/396 (41%), Gaps = 82/396 (20%)

Query: 5   SITDSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
              +S+A+ +A   L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H
Sbjct: 35  KTPESSAIEEAAHLLRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVH 94

Query: 64  VSDISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL 107
           +  I M+++  +                +  +   L + FWPGPLT++L   S + +   
Sbjct: 95  IDSIEMLERLLNPASSSPTRTMRTARNTIPAIYQPLIERFWPGPLTILLHNPSGSLLAGE 154

Query: 108 STANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            TANL T   R+P     + LI     PLA PSAN S + S T  +H+    +   I LI
Sbjct: 155 VTANLTTFGVRMPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLEGRIDLI 213

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTP 220
           +DGG   +G+EST+V+        ILRPGG+ IE L+     E       +  +D    P
Sbjct: 214 LDGGPCGVGVESTVVDGLSNPPA-ILRPGGVGIEELRTVPGWENVQIAYHDGTLDVKEVP 272

Query: 221 QSPGMLKSHYAPRSQVRLR----AIHVNPREALIRFGNVPIKNIENAIISLNLSKTG--- 273
           ++PGM   HY+P+++V L     +     +       +  I+     ++     K G   
Sbjct: 273 RAPGMKYRHYSPKARVVLFCAGSSEEAIAKYVYKDLEDTAIRAHMIGVVRTRQWKRGLGL 332

Query: 274 -----------------------------------------------KLKEAAFNLFNYM 286
                                                           ++  A  LF+ +
Sbjct: 333 VSEEDIQKTLKPIPSLVDDLVCFSVPVKDKINNCEITKAAFDCHLGDNIESIARGLFSAL 392

Query: 287 KIADDSGASSIAFSSIPN--HGLGIAINNRLERAAA 320
           +  D+     I    + +    L  A+ NRL +AA 
Sbjct: 393 RAMDEMEVDVIYVEGVSDSQGDLAAAVMNRLRKAAG 428


>gi|78187540|ref|YP_375583.1| Sua5/YciO/YrdC/YwlC [Chlorobium luteolum DSM 273]
 gi|78167442|gb|ABB24540.1| translation factor SUA5 [Chlorobium luteolum DSM 273]
          Length = 315

 Score =  291 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 105/323 (32%), Positives = 152/323 (47%), Gaps = 13/323 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ   ITDS    +A   L+AG  +A PTETVYGL      P A+  L+  K RP+ NPL
Sbjct: 1   MQTC-ITDSA--EEAARILNAGKIVAFPTETVYGLGAGIDFPEAVEGLFRAKGRPSDNPL 57

Query: 61  ICHVSDISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HVS +  V+   A V   +  L + F+PGPLT+V     +  +    TA L+T   R 
Sbjct: 58  IVHVSSVEQVEMAAARVTTDARRLMERFFPGPLTIVFP--KSPRVPHSVTAGLETVGIRC 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++ +     P+A PSANRSG+ S T  + +    +   I  I+ G  S+IGLES
Sbjct: 116 PRHPVAREFLSRCCCPVAAPSANRSGRPSATTWQAV-QEDLDGRIDAILKGEASRIGLES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+      V +LR G + +E L+  + S      + E  TP+SPG+   HYAP + + 
Sbjct: 175 TIVDCTGPHPV-MLRAGAVSLEELQSIVPSTTAARPLREGETPKSPGLKYPHYAPEATII 233

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
                  P               +             L+  A +LF++ +  D    S+I
Sbjct: 234 PIEKEETPSPEGRAAYIGTAPAPKGMAFVEQCP---DLEAYARSLFHFFRECDRRAISTI 290

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P  G+G A+ +R+ RAA 
Sbjct: 291 YCELPPTAGIGRALLDRINRAAG 313


>gi|170740606|ref|YP_001769261.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium sp. 4-46]
 gi|168194880|gb|ACA16827.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacterium sp. 4-46]
          Length = 330

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 126/307 (41%), Positives = 174/307 (56%), Gaps = 3/307 (0%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  +A PTETVYGL  D+ +  A+  +Y  K RP  NPLI H+ + +  ++    
Sbjct: 26  ELLRAGAVVAFPTETVYGLGGDATDGAAVAAIYAAKARPRFNPLIAHLPEAAAARREGVF 85

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
              +  LA+ FWPGPLTLV+       +  L+ A L +   RVP     + L+   G P+
Sbjct: 86  GAQASRLAEAFWPGPLTLVVPRAPEGSVCDLARAGLDSVALRVPAAPLARDLLRAVGRPI 145

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANRSG++S T  +H+L + +   I  ++DGG   +G+ESTIV    +   R+LRPG
Sbjct: 146 AAPSANRSGRVSPTRAEHVL-ADLDGRIAALLDGGPCPVGVESTIVACLDDAP-RLLRPG 203

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
           G+  E L+  +   L       + P SPG+L SHYAPR+ +RL A  + P EA + FG  
Sbjct: 204 GVPREALEAVLGGPLRAAAPAGAAPVSPGLLASHYAPRAALRLDAAEIRPGEAALLFGGA 263

Query: 256 PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRL 315
               +  A   L+LS  G L EAA  LF  ++  D SGA++IA + IP  GLG AI +RL
Sbjct: 264 RPPGLAAAAARLDLSPRGDLAEAASRLFAALRTLDASGAATIAVTPIPREGLGEAIADRL 323

Query: 316 ERAAAPR 322
            RAAAPR
Sbjct: 324 ARAAAPR 330


>gi|319796432|ref|YP_004158072.1| sua5/ycio/yrdc/ywlc family protein [Variovorax paradoxus EPS]
 gi|315598895|gb|ADU39961.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus EPS]
          Length = 333

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 101/337 (29%), Positives = 156/337 (46%), Gaps = 25/337 (7%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+      A+ +A   L AG  +A PTETVYGL  D+ +  A+  +++ K RPA +PLI 
Sbjct: 2   ILDGQSPEAIAEAVRMLRAGGLVAFPTETVYGLGADASSDMAVAGIFKAKGRPADHPLIV 61

Query: 63  HVS----DISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           HV+        + + A   PL +  L + FWPGPLTL++           +     T   
Sbjct: 62  HVAAGMKGTEALSRFAQPLPLFAQKLVQAFWPGPLTLIVTRQPGVGTA--AAGGQDTIGL 119

Query: 118 RVPCG-FTKKLIETY---GHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           R P     + L+E     G P +A PSANR G++S T  +H+       E   ++DGG  
Sbjct: 120 RCPSHPVAQALLEACAEQGVPGVAGPSANRFGRVSPTTAQHVYEEF--GEAVPVVDGGAC 177

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYA 231
           ++G+ESTIV+      V +LRPG +    ++ A   +L +  V ET  P++ G L++HYA
Sbjct: 178 EVGIESTIVDCSRGAPV-LLRPGLITRAQIEAACGEKLSDRDVLETPDPRASGTLEAHYA 236

Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEAAFNLF 283
           P ++VRL       +  L   G         +  SL                  +A  LF
Sbjct: 237 PNAKVRLMDAKAL-QTGLDVLGANAAHIAVWSRTSLRCRSQRVLQRRMPDDAAASAHQLF 295

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             ++  D  G   I   + P+      + +RL+RA+A
Sbjct: 296 AVLREFDAQGVKLIWVETPPDTPEWEGVRDRLQRASA 332


>gi|315660271|ref|ZP_07913126.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus lugdunensis
           M23590]
 gi|315494698|gb|EFU83038.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus lugdunensis
           M23590]
          Length = 344

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 15/327 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +     + G  IA+PTETVYGL  ++++  A+ ++YE K RP+ NPLI H+ D   + 
Sbjct: 21  LDEIKHVYEQGGLIALPTETVYGLGANAKDQEAVTKIYEAKGRPSDNPLIVHIYDQQQLT 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
                +      L   FWPGP++ +L L     +    T  L +   R+P     + +++
Sbjct: 81  PFIETITDKVQILMNYFWPGPISFILPLKRGY-LCEKVTGGLDSIAVRMPSHPIGRAILK 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T   H+    +  +I  II+G  S+ GLEST+++       
Sbjct: 140 YVDLPIAAPSANTSGKPSPTTFDHVY-HDLNGKIDGIINGDQSEEGLESTVLDCTT-YPF 197

Query: 190 RILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH------ 242
           +I RPG +    +   +    ++   ++   P +PGM   HYAP + V +  +       
Sbjct: 198 KIARPGAITQSMINAILPDAVVDSNYNDMVRPIAPGMKYKHYAPDTPVTIVKMKGKHIPE 257

Query: 243 -VNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSG-ASSIAF 299
            ++   A   F  V  + I +  + + L K    +K A  NL+  +   D+         
Sbjct: 258 IMDKEHAAFIFPEVYRQQIPSESLFIPLCKDDQDIKTANHNLYKILHDLDNMDHVHKAYI 317

Query: 300 SSIPNHGLGIAINNRLERAAAPRNQSQ 326
                +    AI NR+ +AAA R   +
Sbjct: 318 YGFDINDDTQAIMNRMLKAAANRMIGE 344


>gi|329851505|ref|ZP_08266262.1| SUA5 domain protein [Asticcacaulis biprosthecum C19]
 gi|328840351|gb|EGF89923.1| SUA5 domain protein [Asticcacaulis biprosthecum C19]
          Length = 304

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 12/310 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L  G  I +PTETVYGL   + +P A+ +++E K RP  NPLI H+  +    
Sbjct: 3   VAAAIAALRNGDLIHLPTETVYGLGARADDPAAVVKVFEAKGRPRFNPLIVHIGSVESAA 62

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
               +D  +L LA  FWPGPLTLV+ +  T     L+ A L +   R+P      +++  
Sbjct: 63  AIGVMDERALALADTFWPGPLTLVVPVRDTVAACDLARAGLDSVALRLPSHPLALEVLRG 122

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G  +  PSANRSG+ S T     L  +    + + +DGG  ++G+EST+V++  +   R
Sbjct: 123 FGGGVVAPSANRSGRPSPTTQADSLEET-GTSVAVSLDGGACQVGVESTVVSLLGD--AR 179

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI 250
            LR G +    ++  I        D+T   +SPG L  HYAP + V +         A +
Sbjct: 180 YLRAGAVTRAQIEAVIG---PLAADDTEGHRSPGRLSLHYAPDAPVHINMETPPLGAAYL 236

Query: 251 RFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIA 310
            FG       + A   + LS      EAA NLF+ ++ AD      IA + IP  G+G A
Sbjct: 237 AFGP-----TDYAGPVIQLSANRDPAEAAANLFSGLREADRLNPVCIAIAPIPGDGIGEA 291

Query: 311 INNRLERAAA 320
           IN+R+ RAA 
Sbjct: 292 INDRIRRAAG 301


>gi|71001138|ref|XP_755250.1| translation initiation protein Sua5 [Aspergillus fumigatus Af293]
 gi|66852888|gb|EAL93212.1| translation initiation protein Sua5 [Aspergillus fumigatus Af293]
 gi|159129334|gb|EDP54448.1| translation initiation protein Sua5 [Aspergillus fumigatus A1163]
          Length = 433

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/396 (26%), Positives = 172/396 (43%), Gaps = 82/396 (20%)

Query: 5   SITDSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
              +S+A+ +A   L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H
Sbjct: 35  KTPESSAIEEAAHLLRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVH 94

Query: 64  VSDISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL 107
           +  I M+++  +                +  +   L + FWPGPLT++L   S + +   
Sbjct: 95  IDSIEMLERLLNPASSSPTRTTRTAKNTIPAIYQPLIERFWPGPLTILLHNPSGSLLADE 154

Query: 108 STANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            TANL T   R+P     + LI     PLA PSAN S + S T  +H+    +   I LI
Sbjct: 155 VTANLTTFGVRMPASPLARLLIHVADRPLAAPSANASTKPSPTAAEHVY-HDLEGRINLI 213

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTP 220
           +DGG   +G+EST+V+    K   ILRPGG+ IE L+     E       +  +D    P
Sbjct: 214 LDGGPCGVGVESTVVDGLS-KPPAILRPGGVGIEELRTVPGWENVQIAYHDGNLDVKEVP 272

Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREAL------------------------------- 249
           ++PGM   HY+P+++V L     +  E                                 
Sbjct: 273 RAPGMKYRHYSPKARVVLFCAGSSEEEIAKYVYKDLEDTAIRAHMIGVVRTRQWKRGLGL 332

Query: 250 -----IRFGNVPIKNIENAIISLNLSKTG------------------KLKEAAFNLFNYM 286
                I+    PI ++ + ++  ++   G                   ++  A  LF+ +
Sbjct: 333 VSEEDIQKTLKPIPSLVDDLVCFSVPVKGRINNREIARAAFDCHLGDNIESIARGLFSAL 392

Query: 287 KIADDSGASSIAFSSIPN--HGLGIAINNRLERAAA 320
           +  D+     I    + +    L  A+ NRL +AA 
Sbjct: 393 RAMDEMEVDVIYVEGVSDSQGDLAAAVMNRLRKAAG 428


>gi|254291504|ref|ZP_04962295.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422568|gb|EDN14524.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 328

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/323 (29%), Positives = 164/323 (50%), Gaps = 11/323 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-L 238
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R +
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEVMQ--PQVHQVAVPGNVDSHYQPKTRLRVI 245

Query: 239 RAIHVNPREAL-IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
            A+      A  I+   + +  ++ +   L      + K     L+  +   D  G   I
Sbjct: 246 DALENELATAGNIKIALLHLSELQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDEI 305

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P     +A+++RL RAA+
Sbjct: 306 WLERPPQGEAWLAVHDRLRRAAS 328


>gi|299747557|ref|XP_002911188.1| YwlC protein [Coprinopsis cinerea okayama7#130]
 gi|298407573|gb|EFI27694.1| YwlC protein [Coprinopsis cinerea okayama7#130]
          Length = 471

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/359 (28%), Positives = 163/359 (45%), Gaps = 48/359 (13%)

Query: 8   DSNALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           + + L++A   L D    +  PTETVYGL   + N  A  +++  K RP  NPLI HVS 
Sbjct: 107 EPHLLKQAAHHLCDLHETVVFPTETVYGLGAVATNGDAASKIFSTKGRPPDNPLIVHVSS 166

Query: 67  ISMVKKH---ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           ++M++       + P +   L + FWPG LTL+    + T I  + +A  +T   R+P  
Sbjct: 167 VTMLESLLPPGYLYPKAYQVLMRHFWPGALTLLFPRNAET-IPSIISAGQQTVAIRMPSH 225

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + LI   G PLA PSAN SG+ S T  +H+    +  ++PLIIDGG   +GLEST+V
Sbjct: 226 PVARALIAVAGKPLAAPSANTSGKPSPTKAEHVAKD-LDGKVPLIIDGGSCGVGLESTVV 284

Query: 182 N-VQCEKKVRILRPGGLEIETLKRAISVELEYCVDET--------------STPQSPGML 226
           + +  + ++RILRPGG+ +E ++ A+  E       +              + P +PGM 
Sbjct: 285 DGLHEDGRIRILRPGGITVEQIENALKQEFPEGAAPSVLVHKRDYQDEEMETAPTTPGMK 344

Query: 227 KSHYAPRSQV--------------------RLRAIHVNPREALIRFGNVPIKNIENAII- 265
             HY+P   V                     L+ +  N R  ++   +  I ++   I  
Sbjct: 345 YRHYSPSVPVTLLCTISKPPPGSTSISISTFLKCLAPNSRVGILAPSDAKIWDVVQTIEG 404

Query: 266 ----SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                  L  +      A  LF+ +   +      I    +     G+A+ NR+ +AA 
Sbjct: 405 PHWHRFPLGPSKDPALTAQRLFDGLLTLEGEKVDLILIEEVAEEHEGLAVMNRVRKAAG 463


>gi|289550269|ref|YP_003471173.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179801|gb|ADC87046.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus lugdunensis
           HKU09-01]
          Length = 344

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/328 (27%), Positives = 150/328 (45%), Gaps = 17/328 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +     + G  IA+PTETVYGL  ++++  A+ ++YE K RP+ NPLI H+ D   + 
Sbjct: 21  LDEIKHVYEQGGLIALPTETVYGLGANAKDQEAVTKIYEAKGRPSDNPLIVHIYDQQQLT 80

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
                +      L   FWPGP++ +L L     +    T  L +   R+P     + +++
Sbjct: 81  PFIETITDKVQILMNYFWPGPISFILPLKRGY-LCEKVTGGLDSIAVRMPSHPIGRAILK 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T   H+    +  +I  II+G  S+ GLEST+++       
Sbjct: 140 YVDLPIAAPSANTSGKPSPTTFDHVY-HDLNGKIDGIINGDQSEEGLESTVLDCTT-YPF 197

Query: 190 RILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH------ 242
           +I RPG +    +   +    ++   ++   P +PGM   HYAP + V +  +       
Sbjct: 198 KIARPGAITQSMINAILPDAVVDSNYNDMVRPIAPGMKYKHYAPDTPVTIVKMKGKHIPE 257

Query: 243 -VNPREALIRFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIADDSG-ASSIAF 299
            ++   A   F  V  + I +  + + L K    +K A  NL+  +   D+         
Sbjct: 258 IMDKEHAAFIFPEVYRQQIPSESLFIPLCKDDQDIKTANHNLYKILHDLDNMDHVHKAYI 317

Query: 300 SSIP-NHGLGIAINNRLERAAAPRNQSQ 326
                N G   AI NR+ +AAA R   +
Sbjct: 318 YGFDINDGT-QAIMNRMLKAAANRMIGE 344


>gi|289615809|emb|CBI57550.1| unnamed protein product [Sordaria macrospora]
          Length = 453

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/395 (28%), Positives = 171/395 (43%), Gaps = 88/395 (22%)

Query: 12  LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           LR+A   L    +P+A PTETVYGL  D+    A++ +Y  K RP+ NPLI HV D+SM+
Sbjct: 57  LREAAHHLRTTDIPVAFPTETVYGLGADATRSAAVKGIYAAKGRPSDNPLIVHVCDLSML 116

Query: 71  KKHAS-------------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
           +   S                   +  +   L   FWPGPLT++L   S + + P  TA 
Sbjct: 117 RSLISSPSSSSSSSGQNQEEEKDPIPEIYHPLITRFWPGPLTILLPNPSPSLLAPEVTAG 176

Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           L T   R+P     + LI+    PLA PSAN S + S T  +H+L   +   I LI+DGG
Sbjct: 177 LPTFGCRMPASALARSLIKLANAPLAAPSANASTKPSPTAAQHVL-DDLAGRIELILDGG 235

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE-------LEYCVDETSTPQSP 223
              +G+EST+V+  C   V +LRPGG+ +E ++     E        +  V   + P++P
Sbjct: 236 SCSVGVESTVVDGLCSPPV-VLRPGGVSLEEIRSVPGWEGVEKAYKDQAEVGSKTAPRAP 294

Query: 224 GMLKSHYAPRSQVRLRAIH---------------------VNPREALIRFGNVPI----- 257
           GM   HY+P+++V L  +                           A+IR G  P+     
Sbjct: 295 GMKYKHYSPKARVVLYEVEGGRGEVPGADVREAVEAVGKKEVKSVAVIRTGRWPVAGGLR 354

Query: 258 -KNIENAIIS------------------------------LNLSKTGKLKEAAFNLFNYM 286
            + ++ A  +                              L +     +K  A  LF  +
Sbjct: 355 SQGLDGAAAAKDSGDMAEIGFVVREGQWLDEDDTTVLARLLEIDLGDDVKRVAHGLFAAL 414

Query: 287 KIADDSGASSIAFSSIPN-HGLGIAINNRLERAAA 320
           +  D  GA  I    + +   +  A+ NRL +AA+
Sbjct: 415 RELDRRGADVIFVEGVSDGDDIAAAVMNRLRKAAS 449


>gi|242215074|ref|XP_002473355.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727523|gb|EED81439.1| predicted protein [Postia placenta Mad-698-R]
          Length = 399

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 161/371 (43%), Gaps = 54/371 (14%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I S+T   A+++  + ++    +A PTETVYGL   + +  A  R++  K RP  NPLI
Sbjct: 23  EITSVTTLEAIQRGAKQINECQTVAFPTETVYGLGALALDAVAASRIFSTKGRPPDNPLI 82

Query: 62  CHVSDISMVKKH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HVS  +M+        ++      L + FWPGPLTL+     T  +  + TAN  T   
Sbjct: 83  VHVSSDAMLNTLLPEGYTISRTYEILIRHFWPGPLTLLFPTNPTL-VPSIITANQPTVAV 141

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + LI     P+A PSAN SG+ S T  +H+    +  ++ +I+DGG   +GL
Sbjct: 142 RMPSHPVARALIALADAPIAAPSANSSGRPSPTRAEHVFKD-LDGKLGVILDGGPCGVGL 200

Query: 177 ESTIVN-VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS---------------TP 220
           EST+++ +  +  +R+LRPGG+ +E L+  +  EL    D                   P
Sbjct: 201 ESTVIDGLHADGNIRVLRPGGVTVEDLESVLQRELGDSGDVPKVLVHRRDFRDEAIEQAP 260

Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAI---------------- 264
            +PGM   HY+P   V L      P +         ++++ N +                
Sbjct: 261 TTPGMKYRHYSPAVPVILLRTSSPPSDVTPTPIKTFLESLHNRVQGSEGHLKIGLLAPSD 320

Query: 265 ---------------ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
                           +  L        +A  LF+ +   D +G   I    I     G+
Sbjct: 321 SPLPTNFTSSSDFEWQTFPLGPIADPSISAQRLFDGLLTLDAAGVDLILIEEIKEEREGL 380

Query: 310 AINNRLERAAA 320
           A+ NR+ +AA 
Sbjct: 381 AVMNRVNKAAG 391


>gi|156744105|ref|YP_001434234.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus castenholzii DSM
           13941]
 gi|156235433|gb|ABU60216.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus castenholzii DSM
           13941]
          Length = 355

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/340 (29%), Positives = 162/340 (47%), Gaps = 26/340 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S  D   + +A   +++G  +A PTETVYGL  ++ +  A+ R++  K RPA +P+I H+
Sbjct: 15  SAPDPRIIAEAAAVIESGGLVAFPTETVYGLGANALDERAVTRIFRAKGRPATDPIIAHI 74

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +D+  +   A  + P++  LA+ FWPGPLTLV+       +    +A   T   R+P   
Sbjct: 75  ADLRQLDMLARDIPPVARVLAQRFWPGPLTLVVWRRPI--VPANLSAGRATVAVRMPAHP 132

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               LI   G P+A PSANR  + S T   H+L   +   I L++DGG + +G+ES++V+
Sbjct: 133 VALALIAAAGVPIAAPSANRFSRPSPTTAVHVL-DDLAGCIDLVLDGGPTLVGIESSVVD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQVR-- 237
           +  +   R+LRPGG+ +  L+  +    VE  Y         +PGML  HYAP + +   
Sbjct: 192 LTTD-PPRLLRPGGVTVAALRELLPELIVEPRYLSVGDEAAPAPGMLLRHYAPDAPLIVV 250

Query: 238 ---------------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
                          L A+    +  ++ F     +  +  +  + L       + A  L
Sbjct: 251 AGEREAALARIRSEVLMALDAGKQVGMLAFDEDVAELADLPVRIVALGSAANPGQVAQRL 310

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           F  ++  +  G   I        GL +A+ +RL RAA  R
Sbjct: 311 FAALREIERIGVDLILVRDPGREGLRLAVRDRLVRAAEGR 350


>gi|258621755|ref|ZP_05716786.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585986|gb|EEW10704.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 329

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 14/325 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H      + + A  V P +  LA+ FWPGPLT++L       + P+ T  L+T   RVP
Sbjct: 72  VHFGSAEQIAEWATDVVPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLEST
Sbjct: 130 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR- 237
           IV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++++R 
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKTRLRV 244

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGAS 295
           +  +               +   E      +L        K     L+  +   D  G  
Sbjct: 245 IDHVENELATQASDVKIALLHLSEQQASEQSLLKPMPQDAKAYGQALYRSLAEVDKWGVD 304

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I     P     +A+++RL RAA+
Sbjct: 305 EIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|261210756|ref|ZP_05925048.1| YrdC family protein [Vibrio sp. RC341]
 gi|260840241|gb|EEX66821.1| YrdC family protein [Vibrio sp. RC341]
          Length = 320

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 11/323 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 5   QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  +   +  LA+ FWPGPLT++L       + P+ T  L T   RVP
Sbjct: 64  VHLGSAEQLSEWATDIADEAYQLAQAFWPGPLTMLLP--KAEHVSPVVTGGLDTIGIRVP 121

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 ++++ +   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 122 AHPVLLEILKAHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-L 238
           IV++ C K  R+LR G +    L   +  E+     +      PG + SHY P++++R +
Sbjct: 181 IVDLTC-KPFRVLRAGPITASELSAVLGQEV--LQPQVHHVAVPGNVDSHYQPKTRLRVI 237

Query: 239 RAIHVNPREAL-IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
            AI      A  I+   + +  ++ +   L        K     L+  +   D  G   I
Sbjct: 238 DAIDNELVTAGNIKIALLHLSELQASEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVDEI 297

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P     +A+++RL RAA+
Sbjct: 298 WLERPPQGETWLAVHDRLRRAAS 320


>gi|153828152|ref|ZP_01980819.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148876394|gb|EDL74529.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 329

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R+ 
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245

Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A  +  +   +R   + +  ++ +   L      + K     L+  +   D  G   
Sbjct: 246 DDLARELATQSDELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P     +A+++RL RAA+
Sbjct: 306 IWLERPPEGEAWLAVHDRLRRAAS 329


>gi|225019404|ref|ZP_03708596.1| hypothetical protein CLOSTMETH_03357 [Clostridium methylpentosum
           DSM 5476]
 gi|224947821|gb|EEG29030.1| hypothetical protein CLOSTMETH_03357 [Clostridium methylpentosum
           DSM 5476]
          Length = 341

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 115/325 (35%), Positives = 176/325 (54%), Gaps = 16/325 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A++KA   L  G  + +PTETVYGLA ++ NP A+ ++++ K RP  NPLI H+SD+
Sbjct: 15  DEQAIQKAAALLREGDLVGMPTETVYGLAANALNPAALLKIFKAKGRPQDNPLIVHISDL 74

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           SM+    S +  ++  LA+ +WPGPLT++L       I   +TA L++   R P     +
Sbjct: 75  SMLDGLVSRLPTIAKSLAQAYWPGPLTMILP--KGKQIPYEATAGLESVGIRFPSHPVAQ 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KLI   G PLA PSAN SG+ S T   H+    +  +IPLI+DGG   +GLEST++ V  
Sbjct: 133 KLIAAAGLPLAAPSANLSGKPSPTTAAHVY-EDLNGKIPLILDGGECSVGLESTVIAV-G 190

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAI 241
           E+ VR+LRPGG+ +E L+R   VE++  V     + +   SPGM   HY+P++ V +   
Sbjct: 191 EESVRLLRPGGITVEMLERFCPVEVDDAVCHQLKQGAVAASPGMKYKHYSPKAHVVILDG 250

Query: 242 HVNPREALIRFGN------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
            +      +          +     +  +   +L+  G  +E A  LF  ++  D+ GA 
Sbjct: 251 TLEQFCTYLSAHKQKNTYALVFDGEQQELGVPSLTYGGNAQEQAKELFAALRKLDELGAG 310

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            +        G+G+A+ NRL RAA 
Sbjct: 311 VVYARCPDRSGMGLAVYNRLIRAAG 335


>gi|153802309|ref|ZP_01956895.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124122134|gb|EAY40877.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 328

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 95/323 (29%), Positives = 165/323 (51%), Gaps = 11/323 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A+ + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATAIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-L 238
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R +
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245

Query: 239 RAIHVNPREAL-IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
            A+      A  I+   + +  ++ +   L      + K     L+  +   D  G   I
Sbjct: 246 DALENELATAGNIKIALLHLSELQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDEI 305

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                P     +A+++RL RAA+
Sbjct: 306 WLERPPQGEAWLAVHDRLRRAAS 328


>gi|6321269|ref|NP_011346.1| Sua5p [Saccharomyces cerevisiae S288c]
 gi|417826|sp|P32579|SUA5_YEAST RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           SUA5; AltName: Full=Suppressor of upstream AUG protein
           5; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein SUA5
 gi|4566|emb|CAA45598.1| SUA5 [Saccharomyces cerevisiae]
 gi|971384|emb|CAA59760.1| G1660 [Saccharomyces cerevisiae]
 gi|1322770|emb|CAA96881.1| SUA5 [Saccharomyces cerevisiae]
 gi|285812044|tpg|DAA07944.1| TPA: Sua5p [Saccharomyces cerevisiae S288c]
          Length = 426

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/384 (28%), Positives = 166/384 (43%), Gaps = 71/384 (18%)

Query: 5   SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   +      +A PTETVYGL   + N  ++  +Y  K RP+ NPL
Sbjct: 42  TITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYRAKNRPSDNPL 101

Query: 61  ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105
           I HVS I  + +               ++  +   L    WPGPLT++L + S+  + + 
Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C     +LRPGG   E + +          VE +  V++ 
Sbjct: 221 IILDGGACKVGVESTVVDGLCN-PPTLLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP---------------IKNIE- 261
              ++PGM   HY+P ++V L   H      L     +                IK I  
Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANSNIKKIAI 339

Query: 262 -----------------------NAIISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSI 297
                                     I   L ++G  +E   NLF  ++  D++     I
Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSG--EEIQTNLFAALRKVDENDKVDLI 397

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
               I   G G+A+ NRL +AAA 
Sbjct: 398 FVEGINEEGEGLAVMNRLRKAAAN 421


>gi|290559728|gb|EFD93053.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 358

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 152/339 (44%), Gaps = 24/339 (7%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +IM ++    D   ++ A   +  G  +  PTETVYG+  D+ N  A R ++ +K R A 
Sbjct: 11  EIMKMSKKNVDLEKIKLAAREIRGGKLVVFPTETVYGIGADAFNTKACRDIFRVKNRAAD 70

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           NPLI H+SD   +     VD       +  WP P+T +L       I  + TA + T   
Sbjct: 71  NPLIVHISDFEQLDAITYVDGELREKIRRLWPNPITFILKRKK---IPDVVTAGMDTVAV 127

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       LI     P+A PSAN S   S T  KH +      ++ +IIDGG SK G+
Sbjct: 128 RMPNNRIALSLIRESHTPIAAPSANISTFPSATEAKHAI-EDFNGKVSVIIDGGRSKFGI 186

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDET---STPQSPGMLKSHYAP 232
           EST+++V   K  R+LRPG  EI   ++ +  + +   V++T   +   SPGM   HY+P
Sbjct: 187 ESTVIDV-SRKPYRLLRPGAFEIGDAEKVLGDIIIPKEVNKTVNKAKVLSPGMKYRHYSP 245

Query: 233 RSQVRLRAIHVNPR-------EALIRFGNVPIKNIENAIIS---LNLSKTGKLKEAAFNL 282
           R  + L     + +          ++F  +  ++  +       + L         + NL
Sbjct: 246 RKPLFLFENFRDMKAASDYLLHKNLKFAVISPEDYAHFFYKTRIITLGSIENPISISKNL 305

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           F   +  D         S +      +A+ NRLE+AA  
Sbjct: 306 FRSFRRLDIEEVDFGLISKMRLKKFDLAVRNRLEKAAGK 344


>gi|225164315|ref|ZP_03726583.1| SUA5/YciO/YrdC/YwlC family protein [Opitutaceae bacterium TAV2]
 gi|224801077|gb|EEG19405.1| SUA5/YciO/YrdC/YwlC family protein [Opitutaceae bacterium TAV2]
          Length = 373

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 122/346 (35%), Positives = 177/346 (51%), Gaps = 31/346 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I   T +N LR+    L  G  +A+P+ETVYGLA D+ N  A   ++  K+RP  +PLI
Sbjct: 34  RIYRPTPAN-LRRLASALARGDLVAVPSETVYGLAADALNVAACEAIFAAKRRPHHDPLI 92

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            H++ +  + + A   P +L LAK FWPGPLTLVL       +  L TA L +   R+P 
Sbjct: 93  VHIASLRQLHEIAMPSPEALLLAKAFWPGPLTLVLPKRPH--VPDLVTAGLPSVAVRMPA 150

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               +K+I      LA PSAN  G +S T  +H+   ++   I  I+DGG  K+G+ESTI
Sbjct: 151 HPLFQKIIRLSQRALAAPSANPFGYVSPTTAQHV-KDNLQNRIKHILDGGPCKVGVESTI 209

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYC--------------VDETSTPQSPGML 226
           ++++      +LR GGL +E ++R +   +                    T    +PGML
Sbjct: 210 IDLREPLHPVLLRAGGLPVEEIQRVLQRPVSLAHHVPPSPPPPLSLRSHATQGQTAPGML 269

Query: 227 KSHYAPRSQVRL-------RAIHVNPREALIRFGNVPIKNIENAIIS--LNLSKTGKLKE 277
             HY+PR+ V L          ++ P EAL+     P KN+ + +I     LSKTG L E
Sbjct: 270 DHHYSPRTPVALLTNLTPDFIKNLPPDEALLCL--QPPKNLRHRMIHNLFYLSKTGDLNE 327

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLERAAAPR 322
           AA  LF+ +++ D+ G   I         GL  AI +RL RAAA R
Sbjct: 328 AARQLFDRLRMLDNGGWKKIHAELPGQKKGLAPAIRDRLTRAAAKR 373


>gi|149234890|ref|XP_001523324.1| protein SUA5 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453113|gb|EDK47369.1| protein SUA5 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 454

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 107/412 (25%), Positives = 172/412 (41%), Gaps = 98/412 (23%)

Query: 2   QIMSITDSN---ALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q+  ITD      ++ A  E L     I  PTETVYGLA  + +  +++ +Y  K+RPA 
Sbjct: 41  QVPRITDDETEANIKLAAKELLTTNNAIGFPTETVYGLAGSALSDESVKSIYRAKQRPAD 100

Query: 58  NPLICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLS------------ 100
           NPLI HVS +S +++     +  +  +  +L + FWPGPLT++L   S            
Sbjct: 101 NPLIIHVSSLSQLQRKLLPANYEIPKIYHNLIEHFWPGPLTILLPNNSSNSNSNSSSNSN 160

Query: 101 -----------------TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
                             + I    TAN  T   R+P     + LI     PLA PSAN 
Sbjct: 161 SNSNSNSSSNSSSSSNNKSPISSYVTANQDTFAVRMPAHPVARALIAISDLPLAAPSANS 220

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           S + S T  +H++   +  +IP+++DGG   +G+EST+V+   +  + +LRPGG+ +E L
Sbjct: 221 STKPSPTLAQHVM-HDLGGKIPIVLDGGACDVGVESTVVDGLSDPPM-LLRPGGVSLEEL 278

Query: 203 KRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV- 255
           KR    E       +         ++PGM   HY+P ++V L     +  +A+ ++    
Sbjct: 279 KRVGGEEWKNVRVAKRTAGADELVKTPGMKYKHYSPDAKVVLFVNCGDGEDAIAKYLKAN 338

Query: 256 -----------------------------------------------PIKNIENAIISLN 268
                                                            ++ +   +  +
Sbjct: 339 RVSVDGVEVGARGDLRDSKDSKQEGQGQKHLISANADTPKVALLKSRHFRDYKGIDVVRD 398

Query: 269 LSKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAA 319
           L   G   + A NLF Y++  D D     I    +     G+AI NRL++AA
Sbjct: 399 LGSAGD--DIARNLFKYLREVDEDEKVDLILIEGVEEVDEGLAIMNRLKKAA 448


>gi|151943645|gb|EDN61955.1| suppressor of upstream aug [Saccharomyces cerevisiae YJM789]
 gi|190407112|gb|EDV10379.1| protein SUA5 [Saccharomyces cerevisiae RM11-1a]
 gi|256272245|gb|EEU07236.1| Sua5p [Saccharomyces cerevisiae JAY291]
          Length = 426

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 67/382 (17%)

Query: 5   SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   +      +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 42  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101

Query: 61  ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105
           I HVS I  + +               ++  +   L    WPGPLT++L + S+  + + 
Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV------------PIKNIENAII 265
              ++PGM   HY+P ++V L   H      L     +              +NI+   I
Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339

Query: 266 SLNLSKTG-KL------------------------KEAAFNLFNYMKIADDSG-ASSIAF 299
             +L      L                        +E   NLF  ++  D++     I  
Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
             I   G G+A+ NRL +AAA 
Sbjct: 400 EGINEEGEGLAVMNRLRKAAAN 421


>gi|20093338|ref|NP_619413.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A]
 gi|19918700|gb|AAM07893.1| SUA5/yciO/yrdC family protein [Methanosarcina acetivorans C2A]
          Length = 360

 Score =  288 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 107/353 (30%), Positives = 164/353 (46%), Gaps = 35/353 (9%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           ++  +++ N    L +A E +  G  +A PTETVYGL  +  +P A+R+++E K+RP  N
Sbjct: 12  RLFRVSEENFDAVLDEAAEIIRRGGTVAFPTETVYGLGANGLDPEAVRKIFEAKERPPGN 71

Query: 59  PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PL   V     V K A  +   +  L   FWPGPLT+VL+      +  +++ NL +   
Sbjct: 72  PLSLLVHSGEDVGKVAKNIPEKAFRLMDSFWPGPLTIVLE--KKDIVPEITSGNLPSIGL 129

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      +L++  G PLA PSAN SG+ S +   H+L + +   I  +IDGG + IGL
Sbjct: 130 RMPDHRIPLELVKRAGTPLAAPSANLSGKPSPSLAAHVL-ADLTGRIDAVIDGGGTAIGL 188

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP----GMLKSHYAP 232
           EST+V++  E  V +LRPG + I  L++ I  ++     E  +   P    G   +HY P
Sbjct: 189 ESTVVDMTVEPPV-VLRPGAVGIAELEKVIG-KVRPTYGEPDSRAVPEKQAGQKYNHYTP 246

Query: 233 RSQVRLRAIHVNPREALI------------RFGNVPIKNIE--------NAIISLNLSKT 272
            +QV L           I            + G +              +A     L   
Sbjct: 247 DTQVVLVEGDRKKVSEKIGSLLENSLREGKKVGFLLSNETAGFFASEGLSAQECFLLGSR 306

Query: 273 GKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAAAPRNQ 324
            + +EAA  LF  +++ D      I         GLG A+ NRL  AA+ R  
Sbjct: 307 DEPEEAARRLFEGLRVLDAKSLDVILVDGSFSPSGLGAALLNRLREAASLRYA 359


>gi|259146341|emb|CAY79598.1| Sua5p [Saccharomyces cerevisiae EC1118]
 gi|323348688|gb|EGA82930.1| Sua5p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355058|gb|EGA86888.1| Sua5p [Saccharomyces cerevisiae VL3]
          Length = 417

 Score =  288 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 67/382 (17%)

Query: 5   SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   +      +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 33  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92

Query: 61  ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105
           I HVS I  + +               ++  +   L    WPGPLT++L + S+  + + 
Sbjct: 93  ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV------------PIKNIENAII 265
              ++PGM   HY+P ++V L   H      L     +              +NI+   I
Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 330

Query: 266 SLNLSKTG-KL------------------------KEAAFNLFNYMKIADDSG-ASSIAF 299
             +L      L                        +E   NLF  ++  D++     I  
Sbjct: 331 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 390

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
             I   G G+A+ NRL +AAA 
Sbjct: 391 EGINEEGEGLAVMNRLRKAAAN 412


>gi|328851428|gb|EGG00583.1| hypothetical protein MELLADRAFT_111724 [Melampsora larici-populina
           98AG31]
          Length = 484

 Score =  288 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 108/387 (27%), Positives = 170/387 (43%), Gaps = 71/387 (18%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++  +++AL+ A   +     +A PTETVYGL   + +  A+ ++Y  K RPA NPLI H
Sbjct: 84  ITFANASALQTASILIQNNELVAFPTETVYGLGACATSNIAVSKIYRTKGRPADNPLIVH 143

Query: 64  VSDISMVKKHA---SVDPLSLH-LAKLFWPGPLTLVLDLLST----TDIHPLSTANLKTA 115
           VS + M++       V PLS   L   FWPGPLT ++  +S+    + I    T  LKT 
Sbjct: 144 VSSLHMLQSLLPSDWVLPLSYQILIDEFWPGPLTFLVPTISSEQPISKIPDKVTCGLKTV 203

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI   G P+A PSAN SG+ S T  +H+    +   I L++DGG   +
Sbjct: 204 AVRIPSHPIARALISLSGVPIAAPSANLSGRPSPTEAEHV-RKDLEPSIKLVLDGGPCNV 262

Query: 175 GLESTIVN-VQCEKKVRILRPGGLEIETLKRAI----------SVELEYCVDETST---- 219
           G+EST+++ +  +  +R+LR GGL  E + + +           V +    +   T    
Sbjct: 263 GVESTVIDGLNPDGGIRVLRLGGLSAEDITQCLVNAKTSGKLAEVPIIEVPNSNGTSLAP 322

Query: 220 ---PQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIEN-------------- 262
              P +PGM   HY+P ++V L  +   P     +    PI  I+N              
Sbjct: 323 GIQPTTPGMKYKHYSPNAKVTLINLIRPPIPQNWQSFPTPIDLIDNFTTNFRRENIVCRP 382

Query: 263 -----------------------------AIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
                                         +I   L    + + +A  LF+ M+  D+  
Sbjct: 383 VSIGLMLIENGELLKAFKSYEEELDCDEVELIHYALGPINQPEISAQRLFSSMRSLDECL 442

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
              I    +P +GLG  +  RL +AA 
Sbjct: 443 VDIIFVEQVPLNGLGSTVMERLYKAAG 469


>gi|269957074|ref|YP_003326863.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305755|gb|ACZ31305.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 346

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/340 (32%), Positives = 162/340 (47%), Gaps = 22/340 (6%)

Query: 1   MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M ++   D  + +  A   L AG  +A+PTETVYGLA D+ +P  +  +Y  K RP+ NP
Sbjct: 1   MTVLLHADQPDDVAAAAGILRAGGIVALPTETVYGLAGDALDPAVVGAIYAAKGRPSDNP 60

Query: 60  LICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI HV+    +       P  +  LA+ FWPGPLT+VL       +    TA L T   R
Sbjct: 61  LIVHVAAFDDLPAVVRDVPGSARALAEAFWPGPLTMVLPRRDV--VPDRVTAGLDTVAVR 118

Query: 119 VPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     + ++   G PLA PSAN++G  S T  +H+L   +   IP ++DGG   +G+E
Sbjct: 119 VPAHEAFRAVLRLAGVPLAAPSANQAGSPSPTTAEHVL-HDLDGRIPAVLDGGPCTVGVE 177

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQ----SPGMLKSHYAP 232
           ST+V++      R+LRPGG+ +E L+  +  V+++  V     P     SPGM   HYAP
Sbjct: 178 STVVDLTS-TPPRLLRPGGVSLEELRAVLGDVDVDPAVAGELAPDQVPGSPGMKYRHYAP 236

Query: 233 RSQVRLRAIHVNPREALIR----FGNVPIKNIENAIISLNL-----SKTGKLKEAAFNLF 283
            + V +         A +R       V + + E A     L              A  LF
Sbjct: 237 AAPVVVVDGPTTEAAAWVRGQPELHPVVLCSEEEAAAFAGLDVVTYGSAADPASLARGLF 296

Query: 284 NYMKIADDSGASSIAFSSIPNH-GLGIAINNRLERAAAPR 322
             ++  D    + +      +  G+  A+ NRL +AAA R
Sbjct: 297 GALRSVDRPEITRVFARCPADDAGIARAVRNRLLKAAAFR 336


>gi|207345471|gb|EDZ72286.1| YGL169Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 426

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 67/382 (17%)

Query: 5   SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   +      +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 42  TITDPETEAALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101

Query: 61  ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105
           I HVS I  + +               ++  +   L    WPGPLT++L + S+  + + 
Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 279

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV------------PIKNIENAII 265
              ++PGM   HY+P ++V L   H      L     +              +NI+   I
Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339

Query: 266 SLNLSKTG-KL------------------------KEAAFNLFNYMKIADDSG-ASSIAF 299
             +L      L                        +E   NLF  ++  D++     I  
Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
             I   G G+A+ NRL +AAA 
Sbjct: 400 EGINEEGEGLAVMNRLRKAAAN 421


>gi|295397093|ref|ZP_06807205.1| Sua5/YciO/YrdC/YwlC family protein [Aerococcus viridans ATCC 11563]
 gi|294974685|gb|EFG50400.1| Sua5/YciO/YrdC/YwlC family protein [Aerococcus viridans ATCC 11563]
          Length = 341

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 153/339 (45%), Gaps = 27/339 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  ++ + +    L  G  +A PTETV+GL   + N  A++ +Y +K RP+ NPLI H+
Sbjct: 3   KIIQASEIDEGAALLQDGQLVAFPTETVFGLGAIANNADAVKSVYTVKGRPSDNPLIVHI 62

Query: 65  SDISMVKKH-ASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           +D   +  +    DP    L +     FWPGPLTLV+ +   T    + T  + T   R+
Sbjct: 63  ADPEDIFDYMIDNDPERHDLIEKLTTQFWPGPLTLVVPVKPDT-FPSVVTGGMDTVGIRL 121

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+ LI   G P+  PSAN SG+ S T V H++       I  +++   ++IG+ES
Sbjct: 122 PDHETTRDLIRATGFPIVGPSANISGKPSPTQVAHVM-HDFDGVIGGVVNAEPTRIGVES 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEY-----CVDETSTPQSPGMLKSHYAPR 233
           T++++   + + ILRPG +    L   ++    Y       +    P++PGM   HY+P 
Sbjct: 181 TVLDLTDSRGLIILRPGYITKTMLAEVVTGMPIYIGGTIANNADEAPKAPGMKYVHYSPN 240

Query: 234 SQVRLRAIHVNP-----------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
             V   +                + AL    N   K   +    ++L  T  ++ A   L
Sbjct: 241 QPVMAVSSDKMSNVLANLSSQSIKVALATSENNFEKYKTSVASIVSLGPT--IETATQQL 298

Query: 283 FNYMKIADDS-GASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  DD      I     P+     A  NRL +A++
Sbjct: 299 FAALRTFDDQENIQQIVVELYPDTEKNGAYRNRLIKASS 337


>gi|229505324|ref|ZP_04394834.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
 gi|229357547|gb|EEO22464.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
          Length = 336

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 20  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 78

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 79  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 136

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 137 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 195

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R+ 
Sbjct: 196 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 252

Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A  +  +   +R   + +  ++ +   L      + K     L+  +   D  G   
Sbjct: 253 DDLARELATQSDELRIALLNLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 312

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P     +A+++RL RAA+
Sbjct: 313 IWLERPPQGEAWLAVHDRLRRAAS 336


>gi|16081439|ref|NP_393782.1| sua5 related protein [Thermoplasma acidophilum DSM 1728]
 gi|10639445|emb|CAC11447.1| sua5 related protein [Thermoplasma acidophilum]
          Length = 352

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 151/324 (46%), Gaps = 22/324 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A + L +G  +  PTETVYGL   + NP A ++++  K RP+ NPLI H+S +  
Sbjct: 15  DQIVDAVDALRSGGTVVFPTETVYGLGALASNPEACKKIFIAKGRPSDNPLIVHISSMEQ 74

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
              ++  D    +      WPGPLT+V+       I  + TA L T   R+P       L
Sbjct: 75  FFSYSDPDDSYPIEGLNKAWPGPLTVVV--RKAQGISDVVTAGLPTVAIRMPDDPIAHDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           IE  G P+A PSAN S + SIT+ +  +   +   + +IID G ++ G+ESTI+++   +
Sbjct: 133 IEMAG-PIAAPSANISTRPSITDSRDAIR-FLDGRVDVIIDAGPTRFGIESTIIDITK-R 189

Query: 188 KVRILRPGGLEIETLKRAISV----ELEYCVDETSTPQSPGMLKSHYAPRSQVRL----- 238
              +LRPG   IE L+         ++   + E     +PGM   HY+P +++ L     
Sbjct: 190 PAELLRPGSYAIEDLEPVFGPIVYGDVARGLGEAKIAITPGMKYRHYSPSTKLILAETRE 249

Query: 239 ---RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
              + +     + ++      +   + AII   +     L   A NLF+     DD    
Sbjct: 250 VFRQILDTVDEDMVVLATEEMVDGHKKAII---IGTDRDLYSVAHNLFSSFIALDDMHVD 306

Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319
                     G+G A+ NR+ +A+
Sbjct: 307 LALIHPFEERGIGFALMNRIRKAS 330


>gi|262165359|ref|ZP_06033096.1| YrdC family protein [Vibrio mimicus VM223]
 gi|262025075|gb|EEY43743.1| YrdC family protein [Vibrio mimicus VM223]
          Length = 329

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 14/325 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H      + + A  V P +  LA+ FWPGPLT++L       + P+ T  L+T   RVP
Sbjct: 72  VHFGSAEQIAEWATDVAPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLEST
Sbjct: 130 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR- 237
           IV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++++R 
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKTRLRV 244

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGAS 295
           +  +               +   E       L        K     L+  +   D  G  
Sbjct: 245 IDHVEYELATQASDVKIALLHLSEQQASEQRLLKPMPKDAKAYGQALYRSLAEVDKWGVD 304

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I     P     +A+++RL RAA+
Sbjct: 305 EIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|239818049|ref|YP_002946959.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110]
 gi|239804626|gb|ACS21693.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110]
          Length = 333

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 100/335 (29%), Positives = 157/335 (46%), Gaps = 23/335 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+     +A+ +A   L AG  +A PTETVYGL  D+ +  A+  +++ K RPA +PLI 
Sbjct: 2   ILDGQSPDAIAEAVRVLRAGGLVAFPTETVYGLGADATSDMAVAGIFKAKGRPADHPLIV 61

Query: 63  HVS----DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           HV+        + + A  + P +  L + FWPGPLTL++       +   +     T   
Sbjct: 62  HVAAGIKGTEALSRFAQPLPPFAQKLVQAFWPGPLTLIVTRQPG--VAAAAAGGQDTIGL 119

Query: 118 RVPCG-FTKKLIETY---GHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           R P     + L+E     G P LA PSANR G++S T  +H+       +   +IDGG  
Sbjct: 120 RCPSHPVAQALLEACAEQGVPGLAGPSANRFGRVSPTTAQHVHDEF--GDALTVIDGGAC 177

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE-YCVDETSTPQSPGMLKSHYA 231
           ++G+ESTIV+      V +LRPG +    ++ A    L    V ET  P++ G L++HYA
Sbjct: 178 EVGIESTIVDCSRGAPV-LLRPGLITRAQIEAAAGERLSNREVLETPDPRASGTLEAHYA 236

Query: 232 PRSQVRL-RAIHVNPREALIRFGNVPIKNIENAII------SLNLSKTGKLKEAAFNLFN 284
           P +++RL  A  +     ++  G   I     A +       L          +A  LF 
Sbjct: 237 PNAKLRLMDAKAIQAGLDVLGPGAAHIAVWTRAEVRSHSQRVLQRRMPDDAAASAHQLFA 296

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++  D  G   I   + P+      + +RL RA+
Sbjct: 297 VLREFDAEGVKLIWVETPPDTPEWEGVRDRLHRAS 331


>gi|70725920|ref|YP_252834.1| hypothetical protein SH0919 [Staphylococcus haemolyticus JCSC1435]
 gi|68446644|dbj|BAE04228.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 347

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 95/329 (28%), Positives = 152/329 (46%), Gaps = 15/329 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S  D   L    +  + G  IAIPTETVYGL  D+RN  A+  +Y+ K RP+ NPLI H+
Sbjct: 14  SPLDYPELENIKQVYNDGGLIAIPTETVYGLGADARNQYAVSNIYQAKGRPSDNPLIVHI 73

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            D S + +  S +   +  L   FWPGP++ +L L     +    T  L++   R+P   
Sbjct: 74  HDKSQLDQIVSHLPEEAKCLMDEFWPGPISFILPLRQGY-LCEKVTGGLQSIAVRMPSHP 132

Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + +++    P+A PSAN SG+ S T  +H+ +  +  +I  I++G  S+ GLEST+++
Sbjct: 133 IGRAILQYIDIPIAAPSANVSGRPSPTTFQHVFND-LNGKIDGIVNGDQSEEGLESTVLD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVR---- 237
              +   RI RPG +    L       + EY  D  S P +PGM   HYAP + V     
Sbjct: 192 CT-QFPFRIARPGSITQAMLNDVFPGSVEEYHYDVNSQPIAPGMKYKHYAPDTPVTMLMH 250

Query: 238 ----LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
               ++ I    + A I    +      +A+          +++A  NL+  +   D++ 
Sbjct: 251 LSKPIKTIKEWSKTAFILPETLKQYAPSDALFIKLCKDEKDIRQANHNLYQILHSIDENP 310

Query: 294 -ASSIAFSSIPNHGLGIAINNRLERAAAP 321
                   +        AI NR+ +A   
Sbjct: 311 SIDQAYIYAFDKTDESEAIMNRIIKATGN 339


>gi|323309143|gb|EGA62370.1| Sua5p [Saccharomyces cerevisiae FostersO]
          Length = 417

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 107/384 (27%), Positives = 173/384 (45%), Gaps = 71/384 (18%)

Query: 5   SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   +      +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 33  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92

Query: 61  ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105
           I HVS I  + +               ++  +   L    WPGPLT++L + S+  + + 
Sbjct: 93  ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVN----------------------------PREAL 249
              ++PGM   HY+P ++V L   H                               + A+
Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGXDRMERLKRLIETELKANRNIKKIAI 330

Query: 250 IRFGNVPIKNIENAI-----------ISLNLSKTGKLKEAAFNLFNYMKIADDSG-ASSI 297
           +    +   ++++ I           I   L ++G  +E   NLF  ++  D++     I
Sbjct: 331 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSG--EEIQTNLFAALRKVDENDKVDLI 388

Query: 298 AFSSIPNHGLGIAINNRLERAAAP 321
               I   G G+A+ NRL +AAA 
Sbjct: 389 FVEGINEEGEGLAVMNRLRKAAAN 412


>gi|229525692|ref|ZP_04415097.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229339273|gb|EEO04290.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 329

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 162/326 (49%), Gaps = 16/326 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P+   RLR
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPK--TRLR 243

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSK-----TGKLKEAAFNLFNYMKIADDSGA 294
            I    RE   +   + I  +  + +  +  +       + K     L+  +   D  G 
Sbjct: 244 VIDDLARELATQSNELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGV 303

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I     P     +A+++RL RAA+
Sbjct: 304 DEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|15641092|ref|NP_230724.1| hypothetical protein VC1079 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587076|ref|ZP_01676853.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121726330|ref|ZP_01679620.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673908|ref|YP_001216548.1| hypothetical protein VC0395_A0598 [Vibrio cholerae O395]
 gi|153213572|ref|ZP_01948862.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153816970|ref|ZP_01969637.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153821905|ref|ZP_01974572.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081253|ref|YP_002809804.1| hypothetical protein VCM66_1035 [Vibrio cholerae M66-2]
 gi|229511006|ref|ZP_04400485.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
 gi|229518127|ref|ZP_04407571.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
 gi|229608343|ref|YP_002878991.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
 gi|254848208|ref|ZP_05237558.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298498815|ref|ZP_07008622.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655547|gb|AAF94238.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548711|gb|EAX58760.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121631276|gb|EAX63649.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124115908|gb|EAY34728.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|126512557|gb|EAZ75151.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520613|gb|EAZ77836.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146315791|gb|ABQ20330.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227009141|gb|ACP05353.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012895|gb|ACP09105.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229344842|gb|EEO09816.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
 gi|229350971|gb|EEO15912.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
 gi|229370998|gb|ACQ61421.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
 gi|254843913|gb|EET22327.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297543148|gb|EFH79198.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 329

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R+ 
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245

Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A  +  +   +R   + +  ++ +   L      + K     L+  +   D  G   
Sbjct: 246 DDLARELATQSDELRIALLNLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P     +A+++RL RAA+
Sbjct: 306 IWLERPPQGEAWLAVHDRLRRAAS 329


>gi|254225478|ref|ZP_04919088.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125621948|gb|EAZ50272.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 329

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R+ 
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEVMQ--PQVHQVAVPGNVDSHYQPKTRLRVI 245

Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A  +  +   +R   + +  ++ +   L      + K     L+  +   D  G   
Sbjct: 246 DDLARELATQSDELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P     +A+++RL RAA+
Sbjct: 306 IWLERPPQGEAWLAVHDRLRRAAS 329


>gi|262171882|ref|ZP_06039560.1| YrdC family protein [Vibrio mimicus MB-451]
 gi|261892958|gb|EEY38944.1| YrdC family protein [Vibrio mimicus MB-451]
          Length = 322

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 14/325 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 6   QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLI 64

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H      + + A  V P +  LA+ FWPGPLT++L       + P+ T  L+T   RVP
Sbjct: 65  VHFGSAEQIAEWATDVVPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 122

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLEST
Sbjct: 123 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 181

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR- 237
           IV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++++R 
Sbjct: 182 IVDLTS-KPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKTRLRV 237

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGAS 295
           +  +               +   E       L        K     L+  +   D  G  
Sbjct: 238 IDHVENELATQASDVKIALLHLSEQQANEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVD 297

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I     P     +A+++RL RAA+
Sbjct: 298 EIWLERPPQGEAWLAVHDRLRRAAS 322


>gi|327303106|ref|XP_003236245.1| translation initiation protein Sua5 [Trichophyton rubrum CBS
           118892]
 gi|326461587|gb|EGD87040.1| translation initiation protein Sua5 [Trichophyton rubrum CBS
           118892]
          Length = 445

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 165/393 (41%), Gaps = 85/393 (21%)

Query: 10  NALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A E +  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALIEAAEAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106

Query: 69  MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++                 +S+  +   L K FWPGPL+++L   S   + P  TANL
Sbjct: 107 QLERLLMDPKQSNGAIKCRSTSSIPKIYEPLIKRFWPGPLSIILPNPSHLPLAPEVTANL 166

Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+ +  +   I +I+DGG 
Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIEMILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM
Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVKIGYKDGALQGKTAPRAPGM 284

Query: 226 LKSHYAPRSQVRLRAIHVNPREAL-----------------IRFGNVPIKNIENAIIS-- 266
              HY+P+++V L     +P   +                    G V  K  +  +    
Sbjct: 285 KYKHYSPKARVVLYEPGQDPNSVMNRIIADINKQPEWANGSAAIGVVRTKTWKKGLGVSQ 344

Query: 267 --------------------------------------LNLSKTGKLKEAAFNLFNYMKI 288
                                                 L++         A  LF+ ++ 
Sbjct: 345 VSLSNGESCEATTSAIGSILDIPVECDSINAPSHRINMLDIYLGQNTSSIARGLFSALRS 404

Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
            D+     I    I +    L  A+ NRL +AA
Sbjct: 405 LDERNVPVIYVEGISDTEGDLAAAVMNRLRKAA 437


>gi|229520488|ref|ZP_04409913.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
 gi|297578682|ref|ZP_06940610.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|229342586|gb|EEO07579.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
 gi|297536276|gb|EFH75109.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 329

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R+ 
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 245

Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A  +  +   +R   + +  ++ +   L      + K     L+  +   D  G   
Sbjct: 246 DDLARELATQSDELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 305

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P     +A+++RL RAA+
Sbjct: 306 IWLERPPQGEAWLAVHDRLRRAAS 329


>gi|319893067|ref|YP_004149942.1| YrdC/Sua5 family protein [Staphylococcus pseudintermedius HKU10-03]
 gi|317162763|gb|ADV06306.1| YrdC/Sua5 family protein [Staphylococcus pseudintermedius HKU10-03]
 gi|323463878|gb|ADX76031.1| translation factor, putative [Staphylococcus pseudintermedius ED99]
          Length = 350

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 145/321 (45%), Gaps = 17/321 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L  G  + +PTETVYGL  ++++ TAIR++YE K RP+ NPLI H+ D   + 
Sbjct: 22  LPEIVKTLQDGGLVVLPTETVYGLGGNAKDDTAIRKIYEAKGRPSDNPLIVHIHDTDQLD 81

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              A +   +  L + FWPGP+T +L L     +    T  L +   R+P       L++
Sbjct: 82  DFVADISESTRKLMEAFWPGPITFILPLKQGF-LCDRVTGGLNSVAVRMPSHPVALALLK 140

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A PSAN SG+ S T  +H     +   +  I+    S  GLEST+V+       
Sbjct: 141 AVDLPIAAPSANLSGRPSPTTFEHAF-HDLNHRVEGIMRSTQSDAGLESTVVDCTS-FPF 198

Query: 190 RILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLRA-------I 241
           RI RPG +    L   +   +E      T  P +PGM   HYAP + +++          
Sbjct: 199 RIARPGTITRNMLNDILPQSVEVHSPLATEKPIAPGMKYRHYAPSTPLKMITQLNAPIHE 258

Query: 242 HVNPREALIRFGNVPIKN--IENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSG-ASSI 297
             +   + I F     K   +  +   + +S++   ++ A  NL++ +   D        
Sbjct: 259 DAHEDWSKIAFIVPETKKKFLPASAQVIVISESESDIQGANHNLYDVLHQLDQLNDVDMA 318

Query: 298 AFSSIPNHGLGIAINNRLERA 318
                 ++    A+ NR+ +A
Sbjct: 319 YIYGFEDNFDTEALRNRMLKA 339


>gi|262402565|ref|ZP_06079126.1| YrdC family protein [Vibrio sp. RC586]
 gi|262351347|gb|EEZ00480.1| YrdC family protein [Vibrio sp. RC586]
          Length = 321

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 12/324 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 5   QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  +   +  LA+ FWPGPLT++L       + P+ T  L+T   RVP
Sbjct: 64  VHLGSAEQLCEWATDIADEAYQLAQAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 121

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLEST
Sbjct: 122 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 180

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-L 238
           IV++   K +R+LR G +    L   +  E+     +      PG + SHY P++++R +
Sbjct: 181 IVDLTS-KPIRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 237

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGASS 296
             +               +   E       L        K     L+  +   D  G   
Sbjct: 238 DNVQNEFATQASDVKIALLHLSEQQANEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVDE 297

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P     +A+++RL RAA+
Sbjct: 298 IWLERPPQGEAWLAVHDRLRRAAS 321


>gi|153824989|ref|ZP_01977656.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149741501|gb|EDM55531.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 329

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/326 (29%), Positives = 162/326 (49%), Gaps = 16/326 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 13  QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 71

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 72  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 129

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 130 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P+   RLR
Sbjct: 189 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPK--TRLR 243

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSK-----TGKLKEAAFNLFNYMKIADDSGA 294
            I    RE   +   + I  +  + +  +  +       + K     L+  +   D  G 
Sbjct: 244 VIDDLARELATQSDELHIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGV 303

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I     P     +A+++RL RAA+
Sbjct: 304 DEIWLERPPQGEAWLAVHDRLRRAAS 329


>gi|317495537|ref|ZP_07953905.1| Sua5/YciO/YrdC/YwlC family protein [Gemella moribillum M424]
 gi|316914351|gb|EFV35829.1| Sua5/YciO/YrdC/YwlC family protein [Gemella moribillum M424]
          Length = 343

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/338 (29%), Positives = 164/338 (48%), Gaps = 23/338 (6%)

Query: 2   QIMSITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I++I+ SN   +    L         IAIPTETVYGL+ D+ +  A+ ++YE K RP+ 
Sbjct: 4   EIINISKSNNKEEIYNKLITYYKDNKLIAIPTETVYGLSADATSDEAVCKIYEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H  +++ +       D     L + FWPGP+TL+L+      I    +A L T  
Sbjct: 64  NPLIVHFYEMNQLNDIVDYQDERVDKLIENFWPGPMTLILNAKENNGISKKVSAGLSTLA 123

Query: 117 FRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     +++++     LA PSAN SG+ S T  +H+    +  +I +II+   S IG
Sbjct: 124 VRMPSNKTARQILKETKVLLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSDIG 182

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE----TSTPQSPGMLKSHYA 231
           LEST+++      + I RPG +  E ++  + +      DE    T TP +PGM   HY+
Sbjct: 183 LESTVIDCT-RTPLVIARPGEITKEDIEGILGLGSVKYNDEVMVDTQTPIAPGMKYRHYS 241

Query: 232 PRSQVRLRAIHVNPREALI-----RFGNVPIKNIENAIISLNLSK------TGKLKEAAF 280
           P +++      +      +     + G +  K+ E    +LN+S          ++++  
Sbjct: 242 PEAELLYYEDSLEKALEFLKTKNKKTGFITYKSNEYLFENLNISVKYLADNEKSVEQSNK 301

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
           NL+N ++  D+     I    I      IA+ NRL +A
Sbjct: 302 NLYNILREFDEEKVEEIYILPIKETKENIALLNRLNKA 339


>gi|255745495|ref|ZP_05419443.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262158430|ref|ZP_06029546.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
 gi|262170292|ref|ZP_06037979.1| YrdC family protein [Vibrio cholerae RC27]
 gi|255736570|gb|EET91967.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262021307|gb|EEY40021.1| YrdC family protein [Vibrio cholerae RC27]
 gi|262029871|gb|EEY48519.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
          Length = 322

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 6   QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 64

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 65  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 122

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 123 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 181

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R+ 
Sbjct: 182 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 238

Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A  +  +   +R   + +  ++ +   L      + K     L+  +   D  G   
Sbjct: 239 DDLARELATQSDELRIALLNLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 298

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P     +A+++RL RAA+
Sbjct: 299 IWLERPPQGEAWLAVHDRLRRAAS 322


>gi|323337544|gb|EGA78789.1| Sua5p [Saccharomyces cerevisiae Vin13]
          Length = 426

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 168/382 (43%), Gaps = 67/382 (17%)

Query: 5   SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   +      +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 42  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 101

Query: 61  ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105
           I HVS I  + +               ++  +   L    WPGPLT++L + S+  + + 
Sbjct: 102 ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 161

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 162 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 220

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 221 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEXIVKLGGEAWSLCKVENKKTVEKG 279

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV------------PIKNIENAII 265
              ++PGM   HY+P ++V L   H      L     +              +NI+   I
Sbjct: 280 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGVDRMERLKRLIETELKANRNIKKIAI 339

Query: 266 SLNLSKTG-KL------------------------KEAAFNLFNYMKIADDSG-ASSIAF 299
             +L      L                        +E   NLF  ++  D++     I  
Sbjct: 340 LTSLKLRDSDLQSKIFNEPDFSSKTFIIERLGQSGEEIQTNLFAALRKVDENDKVDLIFV 399

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
             I   G G+A+ NRL +AAA 
Sbjct: 400 EGINEEGEGLAVMNRLRKAAAN 421


>gi|134095773|ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC family protein [Herminiimonas
           arsenicoxydans]
 gi|133739676|emb|CAL62727.1| Conserved hypothetical protein, putative translation factor
           [Herminiimonas arsenicoxydans]
          Length = 339

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 150/326 (46%), Gaps = 19/326 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+  A   L+ G  +A PTETVYGL  D+ NP A+ ++Y+ K RP+ +P+I H++  
Sbjct: 6   DLTAIADAARRLERGELVAFPTETVYGLGADAENPLAVAKIYQAKGRPSNHPVIVHLAPE 65

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           + +   A  V P +  L   FWPGPLTL+L       I         +   R P     +
Sbjct: 66  ADIAYWAKDVSPEARQLIAAFWPGPLTLILKR--ANHIPDTVAGGQDSIGLRCPSHPVAQ 123

Query: 127 LI----ETYGHPLAIPSANRSGQISITNVKHILSSSIC---KEIPLIIDGGISKIGLEST 179
            +    +     +A PSAN+ G +S T  +H+    +      +  ++DGG S++G+EST
Sbjct: 124 ALLRNFKQGKGGIAAPSANKFGHVSPTTAQHVRDEFVDDTNGLLTCVLDGGQSEVGIEST 183

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   + V +LRPG +    +   + V     + + + P++ G L++HYAP + V L 
Sbjct: 184 IVDMSRGRAV-LLRPGHISAAQIGAVLGV--APLLPDAAAPRASGTLEAHYAPHTPVVLL 240

Query: 240 AIHVNPREA------LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
                            R   +          + ++    +    A +L+  ++  DD+ 
Sbjct: 241 EREQMHEALQQLHAHGKRVALMHHSFTATVPAAASIFLPAQPALYAHDLYAALRAMDDAH 300

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
           A  I   S P       +N+RL RAA
Sbjct: 301 ADVIMVESPPGDEAWNGVNDRLRRAA 326


>gi|327483788|gb|AEA78195.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3894-4]
          Length = 322

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 12/324 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 6   QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANHPLI 64

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+     + + A  + P +  LA+ FWPGPLTL+L       + P+ T  L++   RVP
Sbjct: 65  VHLGSAEQLSEWATDIAPEAYQLAEAFWPGPLTLLLP--KAKQVSPVVTGGLESVGIRVP 122

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  +++T+   +A PSAN   ++S T+ + +L   +   +  ++DGG  + GLEST
Sbjct: 123 AHPVLLDILKTHRLAVAAPSANPYKKLSPTSAQQVL-DGLNGRLAAVLDGGECQHGLEST 181

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++   K  R+LR G +    L   +  E+     +      PG + SHY P++++R+ 
Sbjct: 182 IVDLTS-KPFRVLRAGPITASELSAVLGQEV--LQPQVHQVAVPGNVDSHYQPKTRLRVI 238

Query: 240 ---AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A  +  +   +R   + +  ++ +   L      + K     L+  +   D  G   
Sbjct: 239 DDLARELATQSDELRIALLHLSALQASEQRLLKPMPQEAKAYGQALYRSLAEVDKWGVDE 298

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P     +A+++RL RAA+
Sbjct: 299 IWLERPPQGEAWLAVHDRLRRAAS 322


>gi|258626302|ref|ZP_05721149.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581354|gb|EEW06256.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 322

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 14/325 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ ++T ++ +  A + L  G  +AIPTETVYGLA D+  P A+++++  K RPA +PLI
Sbjct: 6   QLSAMTPAD-IECAAQLLKQGQLVAIPTETVYGLAADASQPEAVKQIFSAKGRPANHPLI 64

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H      + + A  V P +  LA+ FWPGPLT++L       + P+ T  L+T   RVP
Sbjct: 65  VHFGSAEQIAEWATDVAPEAYQLAEAFWPGPLTMLLP--KAEHVSPVVTGGLETVGLRVP 122

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 ++++ +   +A PSAN   ++S T+ + +L   +  ++  ++DGG  + GLEST
Sbjct: 123 AHPVLLEILKAHHLAVAAPSANPYKKLSPTSAQQVL-DGLNGKLAAVLDGGECQHGLEST 181

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVR- 237
           IV++   K  R+LR G +    L   +  E L+  V + +    PG + SHY P++++R 
Sbjct: 182 IVDLTS-KPFRVLRAGPITASELSAVLGQEVLQPHVHQVAV---PGNVDSHYQPKTRLRV 237

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNL--SKTGKLKEAAFNLFNYMKIADDSGAS 295
           +  +               +   E       L        K     L+  +   D  G  
Sbjct: 238 IDNVQNELATQASDVKIALLHLSEQQASEQRLLKPMPQDAKAYGQALYRSLAEVDKWGVD 297

Query: 296 SIAFSSIPNHGLGIAINNRLERAAA 320
            I     P     +A+++RL RAA+
Sbjct: 298 EIWLERPPQGEAWLAVHDRLRRAAS 322


>gi|159485276|ref|XP_001700672.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272104|gb|EDO97910.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 340

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/338 (32%), Positives = 157/338 (46%), Gaps = 32/338 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L  G  +AIPTETVYGLA ++ +  A+ R+Y  K RPA NPLI HVS ++M+ 
Sbjct: 1   IARAASILAEGGVVAIPTETVYGLAANALSAEAVGRVYAAKNRPADNPLIIHVSSLAMLA 60

Query: 72  KHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                   + P+   + +  WPGPLT++L       +    T  L T   R+P       
Sbjct: 61  GLYPPGWELPPIYEPVLRDLWPGPLTVLLPRSP--LVPDAVTCGLPTMAVRMPAHPVALA 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G PLA PSAN SG+ S T  KH+ +      IPLI+DGG    G+EST+++    
Sbjct: 119 LIAACGFPLAAPSANSSGRPSPTLAKHVAADLGGGVIPLILDGGACSCGVESTVLDAL-R 177

Query: 187 KKVRILRPGGLEIETLKRAISVE-LEYCVDET--STPQSPGMLKSHYAPRSQVRL----- 238
               ILRPGG+  E L     +E L+   D    + P +PGM   HY+P + V L     
Sbjct: 178 SPPAILRPGGVTREALVGYRGLEALQDFTDAALEAAPTTPGMKYRHYSPTAPVILLDPSP 237

Query: 239 ----------------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
                            A+ V    A    G          +I   L    +  E A  L
Sbjct: 238 PAAAATAAATAAAAAAVAVAVAVAVAAATAGAGTRAVAAQRVIEYVLGHVSRPAEVATEL 297

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           F  ++  D++G   I    + + G G+A+ NRL +AA+
Sbjct: 298 FAGLRALDEAGCVVIVVEGVADEGAGVAVMNRLRKAAS 335


>gi|86606322|ref|YP_475085.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab]
 gi|86554864|gb|ABC99822.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab]
          Length = 366

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/356 (30%), Positives = 166/356 (46%), Gaps = 42/356 (11%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+  T  + +  A E L  G  +AIPTETVYGLA    N  A+  ++  K+RP  NPLI
Sbjct: 4   QILPPTPEH-IALAAEALRRGQLVAIPTETVYGLAGHGLNEQAVAEIFAAKERPRFNPLI 62

Query: 62  CHVS---DISMVKKHA----SVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
            H+    D+  ++       +  P +      L   FWPGPLTLVL     + +  L T+
Sbjct: 63  LHLPAGLDLETLQGWLVDLEAFTPAARARLGSLVDTFWPGPLTLVLP--KGSRVPDLVTS 120

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   R+P     + L+     PLA PSANR G++S T+ + + +  +   IP I+DG
Sbjct: 121 GLPTVALRMPAHPVAQALLRAVQVPLAAPSANRFGRLSPTSAQAVYAE-LAGRIPYILDG 179

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLK 227
           G   +GLEST++ +  +    +LRPGG+  E L+  +++ L      D   +P++PG L 
Sbjct: 180 GECSVGLESTVLKLSPDGTPTLLRPGGIPREVLESHLNLPLSSPPAPDGKESPEAPGQLS 239

Query: 228 SHYAPRSQVRL-----RAIHVNPREALIRFG------NVPIKNIENAIISLNLSK----- 271
           SHYAP   + L       +     + L R         +     +   ++ +LS+     
Sbjct: 240 SHYAPGKPIWLLPTAFAQLQPEDWQQLRRLATGHSHLGILSFAAKPEALAESLSRHCPEV 299

Query: 272 -------TGKLKEAAFNLFNYMKIADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319
                        AA   F  ++  D+  A+ +     P   GLG AI +RL RA+
Sbjct: 300 TFTLECLGPDPNSAAHAFFASLRRLDEGAATLLLAEPPPVVTGLGYAIMDRLRRAS 355


>gi|302694065|ref|XP_003036711.1| hypothetical protein SCHCODRAFT_63438 [Schizophyllum commune H4-8]
 gi|300110408|gb|EFJ01809.1| hypothetical protein SCHCODRAFT_63438 [Schizophyllum commune H4-8]
          Length = 397

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/348 (31%), Positives = 157/348 (45%), Gaps = 53/348 (15%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK----KHASVDPL 79
           P+  PTETVYGL   + + +A   ++  K RPA NPLI HVS +SM+        +  P 
Sbjct: 45  PVVFPTETVYGLGALALDSSAASLIFSTKGRPADNPLIVHVSSMSMLHSILPPDYTFPPS 104

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
              L K FWPGPLT++    +   +  + TA   T   R+P     + LI     PLA P
Sbjct: 105 YQVLMKHFWPGPLTMLFPRHAAI-VPDIITAGQDTVAIRMPSHPVARALIAVANAPLAAP 163

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN-VQCEKKVRILRPGGL 197
           SAN SG+ S T  +H+    +  ++ +I+DGG   +GLEST+V+ +  +  +R+LRPGG+
Sbjct: 164 SANSSGKPSPTRAEHVYRD-LGDKVDVILDGGPCGVGLESTVVDGLNADGHLRVLRPGGV 222

Query: 198 EIETLKRAISVELEYC-------------VDET--STPQSPGMLKSHYAPRSQVRLRAIH 242
            +E L+R +  EL+                DE   + P +PGM   HY+P   V L    
Sbjct: 223 TVEDLERTLREELQASGSVPRVLVHRRDYRDEAMEAAPTTPGMKYKHYSPSVPVILVNTL 282

Query: 243 VNPREALIRF----------GNVPIKNIENAI-----------------ISLNLSKTGKL 275
            NP E   R              P + I   +                 IS  L   GK+
Sbjct: 283 SNPSEPKQRQTIDSLVASLQARYPARPIHAGLMTPDDSRLAQVLHTHESISWRLFPLGKV 342

Query: 276 KE---AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            E    A  LF+     D  G  +I    +     G+A+ NR+ +AA 
Sbjct: 343 SEPAVIAQRLFDGFLTLDREGVDAILIEGVAEEEEGLAVMNRVRKAAG 390


>gi|320582245|gb|EFW96463.1| hypothetical protein HPODL_2120 [Pichia angusta DL-1]
          Length = 380

 Score =  286 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/355 (30%), Positives = 167/355 (47%), Gaps = 41/355 (11%)

Query: 3   IMSITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
            ++ITD      L  A + L      +  P+ETVYGL   S +  +++ +Y  K RPA N
Sbjct: 25  TLTITDPETKQNLEYAADILRNTHHAVGFPSETVYGLGASSLSSESVKSIYAAKNRPADN 84

Query: 59  PLICHVSDISMVKK-----HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP---LSTA 110
           PLI HVS I  +K+        +  +   L + FWPGPLT++L +       P   L T+
Sbjct: 85  PLISHVSSIDQLKRKLMVPGQEIPEIYAPLIEKFWPGPLTILLPMPENVHDSPISQLVTS 144

Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
              T   R+P     + LI     PLA PSAN S + S T   H+    +   IPLI+DG
Sbjct: 145 GQPTFAVRMPQNPVARALIYISDLPLAAPSANASTRPSPTTAAHVY-HDLKGRIPLILDG 203

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSP 223
           G S +GLEST+V+  C+  + +LRPGG+ +E +K+A        V  +    +    ++P
Sbjct: 204 GPSDVGLESTVVDGLCDPPM-LLRPGGISLEQIKQAGGPRWQNIVVAKKTAGKLEPVRTP 262

Query: 224 GMLKSHYAPRSQVRL----------------RAIHVNPREALIRFGNVPIKNIENAIISL 267
           GM   HY+P ++V L                +    N + AL++       N  + +IS 
Sbjct: 263 GMKYRHYSPTARVVLFNNCGDGKEKVKAYLEQNNLQNKKVALLKTRRFAPANDISPLISY 322

Query: 268 N--LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  L  +G   E   NLF+ ++  D      I    +     G+AI NRL +AA+
Sbjct: 323 DGTLGTSGD--EIQRNLFSALRALDAEEYDYILIEGVDETAEGLAIMNRLSKAAS 375


>gi|50290007|ref|XP_447435.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526745|emb|CAG60372.1| unnamed protein product [Candida glabrata]
          Length = 422

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 162/379 (42%), Gaps = 63/379 (16%)

Query: 2   QIMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           ++      +AL KA   +      +A PTETVYGL   S N  ++R +Y+ K RP+ NPL
Sbjct: 43  EVNDAPSRDALLKAAHIIRDTEETVAFPTETVYGLGGSSLNDNSVRNIYKAKNRPSDNPL 102

Query: 61  ICHVSDISMVKK-----------HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI--HPL 107
           I HVS I  + +             ++  +   L +  WPGPLT++L +    ++    L
Sbjct: 103 ITHVSSIDQLNRKIYNDYEDGDILRNIPKIYHPLIEKLWPGPLTILLPIPPERNVSLSKL 162

Query: 108 STANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
           +T +  T   R+P     + LI     P+A PSAN S + S T   H+    +   IPLI
Sbjct: 163 TTGDQPTFAVRIPANSIARALIALADTPIAAPSANASTRPSPTLASHVY-HDLKGRIPLI 221

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL-------KRAISVELEYCVDETST 219
           IDGG   +G+EST+V+  C     +LRPGG   E +        R   VE +  + E   
Sbjct: 222 IDGGACNVGVESTVVDGLCLPPA-LLRPGGFTYEDILHLGGESWRNCKVENKKTLSEGEK 280

Query: 220 PQSPGMLKSHYAP--------------------RSQVRLRAIHVNPREALIR-------- 251
            ++PGM   HYAP                    + +V L +   +  +  +         
Sbjct: 281 VRTPGMKYKHYAPSAKVIVLLPNDSDTQMQLIDKMKVFLSSHQPDIIDKKVAIMTTLKLT 340

Query: 252 --------FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS-GASSIAFSSI 302
                   F +   K  +   +   L  +G  +    NLF  ++ AD++    +I    I
Sbjct: 341 PILNEISLFASSNYKGTKTEFLVSELGASG--EAIQANLFAALRKADETDNVDTIIVEGI 398

Query: 303 PNHGLGIAINNRLERAAAP 321
                G+A+ NRL +A+  
Sbjct: 399 SETSEGLAVMNRLRKASGG 417


>gi|148658404|ref|YP_001278609.1| Sua5/YciO/YrdC/YwlC family protein [Roseiflexus sp. RS-1]
 gi|148570514|gb|ABQ92659.1| translation factor SUA5 [Roseiflexus sp. RS-1]
          Length = 356

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/340 (30%), Positives = 162/340 (47%), Gaps = 26/340 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++ +   + +A   + AG  +A PTETVYGL   + +  A+ R++  K+RPA +P+I H+
Sbjct: 15  AVPEPQIIAEAAAVIRAGGLVAFPTETVYGLGASALDEQAVARIFHAKERPATDPIIAHI 74

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +D+  +   A  V P +  LA+ FWPGPLTLV+       +    +A   T   R+P   
Sbjct: 75  ADLCQLDVLARDVPPAAHALARRFWPGPLTLVVLRRPI--VPANLSAGRATVAVRMPAHP 132

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               LI   G P+A PSANR  + S T   H+L   +   I L++DGG + IG+ES++V+
Sbjct: 133 VALALIAASGVPIAAPSANRFSRPSPTTAAHVL-DDLNGRIDLVLDGGATHIGVESSVVD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRA---ISVELEYCVDETSTPQSPGMLKSHYAPRSQV--- 236
           +  +  V +LRPGG+ I  L+     ++    Y   +     +PGML  HYAP + +   
Sbjct: 192 LTVDPPV-LLRPGGVTITALREVLPELTFAPRYLAGDEEALPAPGMLLRHYAPNATLTVV 250

Query: 237 ---------RLRAIHVNPREALIRFGNVPIKNIENAIISL-----NLSKTGKLKEAAFNL 282
                    R+RA       A +R G +       A+  L      L      +  A  L
Sbjct: 251 AGDHAAALERIRAEAQAAINAGLRVGVLAFDEDAPALADLPVRIVQLGPAANPEVVAQRL 310

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           F  ++  + +G   I        GL + I +RL RAA  R
Sbjct: 311 FAALRAIEQTGVDLILARDPGQEGLSLTIRDRLVRAAEGR 350


>gi|314935935|ref|ZP_07843285.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655941|gb|EFS19683.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 346

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 18/325 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L +     + G  IAIPTETVYGL  +++N  A+  +Y+ K RP+ NPLI H+   S 
Sbjct: 19  SQLAEIKTIYENGGLIAIPTETVYGLGANAKNEQAVENIYKAKGRPSDNPLIVHIYKQSQ 78

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
           +    S  P  +  L   FWPGP++ +L L     +    T  L +   R+P     + +
Sbjct: 79  MDAFVSTIPKEAQKLMNAFWPGPISFILPLKQGY-LCEKVTGGLNSIAVRMPSHPIGRAI 137

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+A PSAN SG+ S T  +H+ +  +  +I  I++G  S+ GLEST+++   + 
Sbjct: 138 LEYVDLPIAAPSANISGRPSPTTFQHVYND-LNGKIDGIVNGDQSEEGLESTVLDCT-QF 195

Query: 188 KVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             RI RPG +    L   +    ++Y  ++   P +PGM   HYAP++ V +      P 
Sbjct: 196 PFRIARPGSITQTMLNHVVPHSVIQYDYNQLERPIAPGMKYKHYAPKTPVYMLTEFTQPI 255

Query: 247 EALIRFGNVPI------KNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSGASSI-- 297
             L   G   +      K +      ++L +    +K A  NL+  +   DD     I  
Sbjct: 256 SELNESGLAFVLPSSMKKYVPKDCTFISLCENQRDVKGANHNLYKILHDIDDD--ERIQK 313

Query: 298 -AFSSIPNHGLGIAINNRLERAAAP 321
               +  N     A+ NR+ +A   
Sbjct: 314 AFIYTFDNIEGSEAVMNRMMKATGN 338


>gi|297170667|gb|ADI21691.1| putative translation factor (SUA5) [uncultured Verrucomicrobiales
           bacterium HF0130_14P10]
          Length = 337

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 110/338 (32%), Positives = 174/338 (51%), Gaps = 23/338 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ         L      L +G  +A+PTETVYGLA  + N  A+ +++E K+RP  +PL
Sbjct: 1   MQKHYGVSPEELSHVAGLLHSGQIVALPTETVYGLACLALNKLAVAKVFEAKQRPINDPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I HVSD++  +     D  ++ L+++FWPGPLTLVL    T  +  + T+ L T   R P
Sbjct: 61  IIHVSDLTEAQSVCRPDHRAILLSEVFWPGPLTLVLP--KTKIVPTIVTSGLSTVAVRSP 118

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++++     PLA PSAN  G+IS T  +H +  S   E P ++DGG +K+G+EST
Sbjct: 119 ANPVFREILNLVSAPLAAPSANPFGKISPTRAEH-IKQSFGDEHPPVVDGGPTKLGIEST 177

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVDETSTPQSPGMLKSHYAPRS 234
           +V++   +  RILRPG ++ E +   +       EL+   D+   P SPG+L  HY P S
Sbjct: 178 VVDLSSSRT-RILRPGPIDREAISAILGEEPEIPELKASSDKPKKPLSPGLLAKHYQPES 236

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNI-------------ENAIISLNLSKTGKLKEAAFN 281
            +++ +   +    L    ++P                    +  ++LS+ G  +E A N
Sbjct: 237 PLQVFSNTEDLMAFLKMEPSIPAATFVITHSPLNENCFPSKGLKFMHLSEFGDPEEIAKN 296

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           LF  ++ AD      I    +P  G+G A+N+RL +A+
Sbjct: 297 LFARLREADAHSPPLILCPLLPETGIGSAVNDRLRKAS 334


>gi|114332280|ref|YP_748502.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91]
 gi|114309294|gb|ABI60537.1| translation factor SUA5 [Nitrosomonas eutropha C91]
          Length = 341

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 28/329 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A   L  G  IA PTETVYGL  D  +P AI+++++IK RP  +PLI H +  + 
Sbjct: 17  EQITAAVASLRKGNVIAFPTETVYGLGADISHPQAIQKIFDIKGRPPDHPLIVHFAKSAE 76

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++  A   P  +L LAK FWPGPLTLVL    +  I    T    T   RVP      +L
Sbjct: 77  LEFWAENIPTTALMLAKHFWPGPLTLVLP--KSRHIPLSVTGGQDTVGLRVPSHPVALRL 134

Query: 128 IETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +E  G    +A PSANR G +S T+  H+        I +I+DGG  ++GLESTIV+   
Sbjct: 135 LEELGGYKAIAAPSANRFGFVSPTSADHVKKE-FGDRIDIILDGGSCEVGLESTIVSCI- 192

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           + +V ILRPGG+ + +++  +  ++       S  ++PG L SHYA  + + +     + 
Sbjct: 193 DNEVAILRPGGISVLSIENVLKQKIFVRSHGNS-IRAPGSLTSHYATTTPLEI----CHG 247

Query: 246 REALIRFGNVPIKNIENAIISLNLSK---------------TGKLKEAAFNLFNYMKIAD 290
               +R   +  + I  A+I  ++ +                        +L+  ++  D
Sbjct: 248 ESLFLRSSILLQQGIRTAVIVRSVREDFVQDANNKLHCVFMPNDPVRFGRDLYATLRRLD 307

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +     I   + P++   +A+ +RL RA+
Sbjct: 308 NENFQQILVEAPPDNLEWLAVADRLNRAS 336


>gi|326471329|gb|EGD95338.1| translation initiation protein Sua5 [Trichophyton tonsurans CBS
           112818]
          Length = 445

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 163/393 (41%), Gaps = 85/393 (21%)

Query: 10  NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A E +      +A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALLEAAEAIRNSDIPVAFPTETVYGLGADATRSRAVQGIYKAKQRPSDNPLIVHVSSRD 106

Query: 69  MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++                 + +  +   L + FWPGPL+++L   S   + P  TANL
Sbjct: 107 QLERLLMDPKQSNGPIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHRPLAPEVTANL 166

Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+ +  +   I  I+DGG 
Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIETILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM
Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQTGYKDGALQGKTAPRAPGM 284

Query: 226 LKSHYAPRSQV---------------RLRAIHVNPREA----------------LIRFGN 254
              HY+P+++V                +  I+  P  A                 +    
Sbjct: 285 KYKHYSPKARVVLFEPGQDTAAVMNRIIADINKQPEWANGSAAIGVIRTKTWKKGLGISQ 344

Query: 255 VPIKNIENAIIS--------------------------LNLSKTGKLKEAAFNLFNYMKI 288
           V + N E+   +                          L+L         A  LF+ ++ 
Sbjct: 345 VSLSNGESCETTTSTIGSILDIPIDCDRINASSRRINMLDLHLGQDTSSIARGLFSALRS 404

Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
            D+     I    I +    L  A+ NRL +AA
Sbjct: 405 LDERDVPVIYVEGISDTEGDLAAAVMNRLRKAA 437


>gi|221069970|ref|ZP_03546075.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1]
 gi|220714993|gb|EED70361.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1]
          Length = 332

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/334 (30%), Positives = 166/334 (49%), Gaps = 21/334 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T   +++ A   L  G  + +PTETVYGLA DS N  A+ +++  K RPA +PLI 
Sbjct: 2   ILDGTLEASVQAAALALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + + ++A   P+ +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADAAAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119

Query: 122 GFTK----KLIETYGHPLA---IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
                   +  +    P+     PSAN+ G++S T  +H+ +     E  L++DGG  ++
Sbjct: 120 HPVAHAVLQACQQLDPPVWGVSAPSANKFGRVSPTTAEHVATEF--GEALLVLDGGACEV 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233
           G+ESTIV+      V +LRPG +  + ++RA  +  L        TP++ G L +HYAP 
Sbjct: 178 GIESTIVDCTRGVPV-LLRPGAITRDDIERACGLRPLSKEELTADTPRASGTLLAHYAPN 236

Query: 234 SQVRL-RAIHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYM 286
           ++VRL  A  +     ++      I       +++  ++      + + ++ A  LF  +
Sbjct: 237 AKVRLMDAGQLQSALDILGKDGRNIAIYHRGPLNVTTAQLLLRRMSDEPRDVARELFGML 296

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   + P+      + +RL+RAAA
Sbjct: 297 RNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330


>gi|294055966|ref|YP_003549624.1| Sua5/YciO/YrdC/YwlC family protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615299|gb|ADE55454.1| Sua5/YciO/YrdC/YwlC family protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 332

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 109/325 (33%), Positives = 169/325 (52%), Gaps = 13/325 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              ++   E L AG  +A+PTETVYGLA ++ +  + R+++E+K RP ++PLI H   I 
Sbjct: 12  EQNIQHCAELLSAGELVAVPTETVYGLAGNALDEDSARKIFEVKGRPFIDPLISHFHSIE 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
               H          AK FWPG LT+V +  ST  I  + TA L +A  RVP     +KL
Sbjct: 72  AATSHIEWSDSIQRAAKAFWPGALTIVANKQST--IPDIVTAGLPSAAIRVPGHPVFRKL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA PSAN  G +S T  +H+   ++   +  I+D G    G+ESTI++++ E 
Sbjct: 130 LSKIDFPLAAPSANPFGYVSPTKAEHV-ERTLGTRLRAILDAGPCLHGVESTILDLRNES 188

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVD---ETSTPQSPGMLKSHYAPRSQVRLRA---- 240
             RILR G +  E++  AI   +    +   + S+  +PG+L  HY+P + V L A    
Sbjct: 189 APRILRQGPISSESISDAIGRTVSETTNASRDDSSQAAPGLLSQHYSPHTPVSLYAPNSL 248

Query: 241 -IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
                P +  + F   P     ++  +   S+ G   E A NLF+ ++  D    S +  
Sbjct: 249 SAEQFPADCAVVFNCKPTAAHLHS-NTFWFSQNGDTCEVAHNLFDLIQRLDQQNFSHLHI 307

Query: 300 SSIPNHGLGIAINNRLERAAAPRNQ 324
            + P+ G+G A+N+RL+RAAA R+Q
Sbjct: 308 ETCPDIGIGKAVNDRLKRAAAKRSQ 332


>gi|21227350|ref|NP_633272.1| SUA5 protein [Methanosarcina mazei Go1]
 gi|20905707|gb|AAM30944.1| SUA5 protein [Methanosarcina mazei Go1]
          Length = 364

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 109/355 (30%), Positives = 169/355 (47%), Gaps = 37/355 (10%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +++ N    + +A E +  G  +A PTETVYGL  D  NP  + +++E K+RP  N
Sbjct: 12  RILRVSEVNFDVIIDEAAEIIRKGGTVAFPTETVYGLGADGLNPDTVLKIFEAKERPPGN 71

Query: 59  PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PL   V     +KK A  +   +L L   FWPGPLT+VL+   T  +  +++ NL T   
Sbjct: 72  PLSLLVHSREDIKKVAKNIPEKALLLMDTFWPGPLTIVLEKKDT--VPEITSGNLPTIGL 129

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      +LI+  G PLA PSAN SG+ S +   H+L + +   I  +IDGG + IGL
Sbjct: 130 RMPDHRIPLELIKRAGTPLAAPSANLSGKPSPSLAIHVL-ADLAGRIDAVIDGGGTAIGL 188

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISV------ELEYCVDETSTPQSPGMLKSHY 230
           EST+V++  E  V +LR G + I  L++ I          EY   +    +  G   SHY
Sbjct: 189 ESTVVDLTVEPPV-VLRIGAVGIGELEKVIGKIRPTYAGAEYGSGKLMPEKQAGQKYSHY 247

Query: 231 APRSQVRLRAIHVNPR-----------------EALIRFGNVPIKNIENAIISLN----L 269
            P +QV L       +                 +A +   +          ++++    L
Sbjct: 248 TPNTQVVLVEGKSEEKVSEQIGILLEEHVSKGQKAGLLLSDETAGFFTAEELNVHDCFLL 307

Query: 270 SKTGKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAAAPRN 323
               + + AA  LF  ++  D +G   I       + GLG A+ NRL  AA+ R+
Sbjct: 308 GSRKEPEGAAKRLFEGLRTLDAAGLDVILADGSFSHSGLGAALINRLREAASVRH 362


>gi|330814380|ref|YP_004358619.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487475|gb|AEA81880.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 315

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 111/324 (34%), Positives = 169/324 (52%), Gaps = 13/324 (4%)

Query: 1   MQIMSIT---DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           M+  S     +   L KA + + +G  IAIPTETVYGLA ++    +++++Y +KKRP  
Sbjct: 1   MKFYSNIYQPNKKNLIKASKLIKSGKVIAIPTETVYGLAGNAYRNDSVKKIYSLKKRPKN 60

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           NPLI H S +  + +   ++   + LAK F PGPLT +L L   + I  L          
Sbjct: 61  NPLIVHFSSVKTMNQEVVINEQLIKLAKKFSPGPLTYILPLKKESKISKLVLNKKHQIAC 120

Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P   T   +++  G P+A PSAN S ++S T    +      K++  I+D   + IGL
Sbjct: 121 RIPNNKTFLAVLKQSGVPIAAPSANLSNKLSTTRSADV-EKEFGKKLSYILDSKKTSIGL 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           EST+  +     ++ILRPG +  E + + +  ++ + V       SPG  K HY+P   V
Sbjct: 180 ESTV--LLLGASLKILRPGAITKEMIFKVLRKKI-HEVKNQGDIISPGQFKKHYSPGIPV 236

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            L      P  AL+ FG   IK          LSK   LKEAA NL+  ++   + G  S
Sbjct: 237 YLNQKKPKPNGALLVFGKQKIKKD-----IFFLSKRSSLKEAASNLYVLLRKIKELGYKS 291

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I+ ++IPN G+G AIN+R+ RA++
Sbjct: 292 ISITNIPNTGIGKAINDRIRRASS 315


>gi|299529402|ref|ZP_07042840.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44]
 gi|298722651|gb|EFI63570.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44]
          Length = 332

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 102/334 (30%), Positives = 166/334 (49%), Gaps = 21/334 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T   +++ A   L  G  + +PTETVYGLA DS N  A+ +++  K RPA +PLI 
Sbjct: 2   ILDGTLEASVQAAAVALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + + ++A   P+ +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADAAAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119

Query: 122 GFTK----KLIETYGHPLA---IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
                   +  +    P+     PSAN+ G++S T  +H+ S     E  L++DGG  ++
Sbjct: 120 HPVAHAVLQACQQLDPPVWGVSAPSANKFGRVSPTTAEHVASEF--GEELLVLDGGACEV 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233
           G+ESTIV+      V +LRPG +  + + RA  +  L        TP++ G L +HYAP 
Sbjct: 178 GIESTIVDCTRGVPV-LLRPGAITRDDIARACGLRPLSKEELTADTPRASGTLLAHYAPN 236

Query: 234 SQVRL-RAIHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYM 286
           ++VRL  A  +     ++      I     + +++  ++      + + ++ A  LF  +
Sbjct: 237 AKVRLMDAGQLQSALGILGKDGRNIAIYHRSPLNVTTAQLLLRRMSDEPRDVARELFGML 296

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   + P+      + +RL+RAAA
Sbjct: 297 RNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330


>gi|315050250|ref|XP_003174499.1| SUA5 protein [Arthroderma gypseum CBS 118893]
 gi|311339814|gb|EFQ99016.1| SUA5 protein [Arthroderma gypseum CBS 118893]
          Length = 441

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 160/389 (41%), Gaps = 81/389 (20%)

Query: 10  NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A E + A    +A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALIEAAEAIRASDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106

Query: 69  MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++                 + +  +   L + FWPGPL+++L       + P  TANL
Sbjct: 107 QLERLLVDPKQSNGAIQSITTSPIPKIYEPLMERFWPGPLSIILPNPPHLPLAPEVTANL 166

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+ +  +   I +I+DGG 
Sbjct: 167 PTFAARMPSSPLARLLIALSDKPVAAPSANASTKPSPTTAQHVFTD-LQGRIDMILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM
Sbjct: 226 CGVGIESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPGM 284

Query: 226 LKSHYAPRSQVRLRAI-------------------HVNPREALIRFGNVPIKNIENAIIS 266
              HY+P+++V L                       +    A I             I  
Sbjct: 285 KYKHYSPKARVILFEAGRDTASVTDRIIADINKGPKLEQAPASIGIVRTKTWKKGLGITR 344

Query: 267 LNLSKTGKLKE----------------------------------AAFNLFNYMKIADDS 292
           ++LS     +                                    A  LF+ ++  D+ 
Sbjct: 345 VSLSNGASCETKSSLLDIPIECDRINPSSQPTNMLDIYLGEDTSSIARGLFSALRSLDER 404

Query: 293 GASSIAFSSIPNHG--LGIAINNRLERAA 319
             S I    I +    L  A+ NRL +AA
Sbjct: 405 NVSVIYVEGISDTEGDLAAAVMNRLRKAA 433


>gi|320102680|ref|YP_004178271.1| Sua5/YciO/YrdC/YwlC family protein [Isosphaera pallida ATCC 43644]
 gi|319749962|gb|ADV61722.1| Sua5/YciO/YrdC/YwlC family protein [Isosphaera pallida ATCC 43644]
          Length = 349

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 17/329 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + L +A   +  G  +A PTETVYGL  D+ NP A+  ++  K RP  NPLI HV + +
Sbjct: 24  PDQLERAAHLIRQGRLVAFPTETVYGLGADATNPQAVASIFRAKGRPLSNPLIVHVREQT 83

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             +    +   L+  LA  FWPGPLTLVL   S           ++T   R P     + 
Sbjct: 84  DARSLTTTWPELAQALADCFWPGPLTLVLPRSSRVPDVVAGGPAMRTVGLRAPAHPVARA 143

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PLA PSANRS  +S T  +H+  + +   + LI+DGG    G+EST++++   
Sbjct: 144 LLEACGVPLAAPSANRSEGLSPTRAEHVARAGLKG-VALILDGGPCVQGIESTVLDLSGP 202

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ--SPGMLKSHYAPRSQVRLRAIHVN 244
           +  R+LRPG L+  TL++ +    E  + + + P   SPG+   HYAPR+ +R+     N
Sbjct: 203 RP-RLLRPGALDPATLRQVVP---ELELPDAAAPLVGSPGLAPRHYAPRAPLRVAVDPAN 258

Query: 245 PREALIRFGNVPIKNI--------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
            R  +     + + +          +   ++ ++        A  L+  +   D +G + 
Sbjct: 259 WRGGIAEAERLGVIHRVSSQDFQSNHPAHAVRIALPDDPAGFAAGLYAALHDLDQAGVTQ 318

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQS 325
           I   + P     +A+ +RL RA+ P   S
Sbjct: 319 IVVEAPPATEEWLAVRDRLRRASCPPGGS 347


>gi|302509580|ref|XP_003016750.1| hypothetical protein ARB_05042 [Arthroderma benhamiae CBS 112371]
 gi|291180320|gb|EFE36105.1| hypothetical protein ARB_05042 [Arthroderma benhamiae CBS 112371]
          Length = 445

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 106/393 (26%), Positives = 168/393 (42%), Gaps = 85/393 (21%)

Query: 10  NALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL KA E +  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS  +
Sbjct: 47  TALLKAAEAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRA 106

Query: 69  MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++                 +S+  +   L + FWPGPL+++L   S   + P  TANL
Sbjct: 107 QLERLLVDPKQSNGAIKCHSTSSIPKIYEPLIERFWPGPLSIILSNPSHLPLAPEVTANL 166

Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+ +  +   I +I+DGG 
Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIEMILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM
Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPGM 284

Query: 226 LKSHYAPRSQVRLRA---------------IHVNPREA----------------LIRFGN 254
              HY+P+++V L                 I+  P  A                 +    
Sbjct: 285 KYKHYSPKARVVLFEPGQDTTSVMNRIIADINKQPEWANGSAAIGVVRTKTWKKGLGISQ 344

Query: 255 VPIKNIENAIIS--------------------------LNLSKTGKLKEAAFNLFNYMKI 288
           V   N E+   +                          L++         A  LF+ ++ 
Sbjct: 345 VSFSNGESCEATTSAIGSTLDLPIECDLINPSSHRINMLDIHLGQDTSSIARGLFSALRS 404

Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
            D+     I    I +    L  A+ NRL +AA
Sbjct: 405 LDERNVPIIYVEGISDTEGDLAAAVMNRLRKAA 437


>gi|311696999|gb|ADP99872.1| translation factor, SUA5 type [marine bacterium HP15]
          Length = 329

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 96/323 (29%), Positives = 153/323 (47%), Gaps = 14/323 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +  T S  L KA   L AG  +AIPTETVYGLA D+ N  A+R+++E K+RP  +PLI H
Sbjct: 7   LDATQSGDLEKAASLLLAGHLVAIPTETVYGLAADASNDQAVRKVFEAKQRPVGHPLIVH 66

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V+    +      +   +  L + FWPGPLTL+L     + +    T        R+P  
Sbjct: 67  VASPDRISLWVDQIPDTARRLVQAFWPGPLTLLLP--KKSGVSDFITGGNPGVAVRMPAH 124

Query: 123 FT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                 ++  G  L  PSAN  G+IS TN +H+L + +  +I  ++DGG   +G+ESTIV
Sbjct: 125 PATLAAMQRLGRDLVAPSANPYGRISPTNAEHVL-AGLSGKIEAVLDGGDCSVGIESTIV 183

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           ++  +  V I RPG +    ++  + + L     + ++   PG +K HY P +     A 
Sbjct: 184 DLTGDTPV-IARPGQIAKSDIEACLGIAL--APGKAASQAVPGSVKRHYQPVTPTVGVAT 240

Query: 242 HVNPR------EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
                       A  + G +  ++    + S ++  +    E A  L+  M   D +   
Sbjct: 241 DRFAGLLPEVTPAGEKIGVIWWQSAPGELASESIMLSADPNEYARMLYTAMHAMDKANVD 300

Query: 296 SIAFSSIPNHGLGIAINNRLERA 318
            I     P     +A+++RL RA
Sbjct: 301 RIVIELPPRESQWLAVHDRLGRA 323


>gi|326479423|gb|EGE03433.1| SUA5 [Trichophyton equinum CBS 127.97]
          Length = 445

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 163/393 (41%), Gaps = 85/393 (21%)

Query: 10  NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A E +      +A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALLEAAEAIRNSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106

Query: 69  MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++                 + +  +   L + FWPGPL+++L   S   + P  TANL
Sbjct: 107 QLERLLMDPKQSNGPIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHRPLAPEVTANL 166

Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+ +  +   I  I+DGG 
Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIETILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM
Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQTGYKDGALQGKTAPRAPGM 284

Query: 226 LKSHYAPRSQV---------------RLRAIHVNPREA----------------LIRFGN 254
              HY+P+++V                +  I+  P  A                 +    
Sbjct: 285 KYKHYSPKARVVLFEPGQDTAAVMNRIIADINKQPEWANGSAAIGVIRTKTWKKGLGISQ 344

Query: 255 VPIKNIENAIIS--------------------------LNLSKTGKLKEAAFNLFNYMKI 288
           V + N E+   +                          L+L         A  LF+ ++ 
Sbjct: 345 VSLSNGESCETTTSTIGSILDIPIDCDRINASSRRINMLDLHLGQDTSSIARGLFSALRS 404

Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
            D+     I    I +    L  A+ NRL +AA
Sbjct: 405 LDERDVPVIYVEGISDTEGDLAAAVMNRLRKAA 437


>gi|228474930|ref|ZP_04059659.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis SK119]
 gi|228271162|gb|EEK12542.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus hominis SK119]
          Length = 346

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 94/325 (28%), Positives = 151/325 (46%), Gaps = 18/325 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L +     + G  IAIPTETVYGL  +++N  A+  +Y+ K RP+ NPLI H+   S 
Sbjct: 19  SQLAEIKTIYENGGLIAIPTETVYGLGANAKNEQAVENIYKAKGRPSDNPLIVHIYKQSQ 78

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
           +    S  P     L   FWPGP++ +L L     +    T  L +   R+P     + +
Sbjct: 79  MDAFVSTIPKEVKKLMNAFWPGPISFILPLKQGY-LCEKVTGGLNSIAVRMPSHPIGRAI 137

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+A PSAN SG+ S T  +H+ +  +  +I  I++G  S+ GLEST+++   + 
Sbjct: 138 LEYVDLPIAAPSANISGRTSPTTFQHVYND-LNGKIDGIVNGDQSEEGLESTVLDCT-QF 195

Query: 188 KVRILRPGGLEIETLKRAISVE-LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
             RI RPG +    L   +    ++Y  ++   P +PGM   HYAP++ V +      P 
Sbjct: 196 PFRIARPGSITQTMLNHVVPHSVIQYDYNQLERPIAPGMKYKHYAPKTPVYMLTEFTQPI 255

Query: 247 EALIRFGNVPI------KNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSGASSI-- 297
             L   G   +      K +    I ++L +    +K A  NL+  +   DD     I  
Sbjct: 256 SELNESGLAFVLPSSMKKYVPKDCIFISLCENQRDVKGANHNLYKILHDIDDD--ERIQK 313

Query: 298 -AFSSIPNHGLGIAINNRLERAAAP 321
               +  N     A+ NR+ +A   
Sbjct: 314 AFIYTFDNIEGSEAVMNRMMKATGN 338


>gi|148284357|ref|YP_001248447.1| putative translation factor protein [Orientia tsutsugamushi str.
           Boryong]
 gi|146739796|emb|CAM79671.1| putative translation factor protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 322

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 163/314 (51%), Gaps = 13/314 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A +F++ G  +  PTETVYG+  D+ N  A + +Y+IK RP  NPLI HVS+I   +   
Sbjct: 15  AAQFIEQGKLVIFPTETVYGIGADATNDNACQSIYKIKNRPMNNPLIIHVSNIQAAQTIG 74

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
             + L++ LA   WPGP++LV+ L  +  I   +TANL T   R+P       L++    
Sbjct: 75  IFNNLAIKLA-TLWPGPISLVVPLNQSAGISRTATANLDTVAIRIPSHKVALMLLQLTQK 133

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSAN SG +S T  +H            I+ G  S  GLESTI++   ++   ILR
Sbjct: 134 PIAAPSANPSGYLSPTTYQHANIHFQNSPDIFILKGAQSTYGLESTIIDTTADRP-TILR 192

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
            G +  E +K                 ++PGM+  HY+P +++RL A  + P+E  + +G
Sbjct: 193 HGFITTEIIKTITGQNPIIAEKHNKLLKAPGMMLKHYSPITKIRLNATKLLPKEVGLNYG 252

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD------SGASSIAFSSIPNHGL 307
                N       LNLS    L  AA NL++ +   D+      +   +IA + IPN G+
Sbjct: 253 ----PNTLTGKYCLNLSPNSNLMNAAANLYHMLHQLDNYAQNPINEVETIAIAQIPNIGI 308

Query: 308 GIAINNRLERAAAP 321
           GIAIN++L RA++ 
Sbjct: 309 GIAINDKLNRASSY 322


>gi|317133627|ref|YP_004092941.1| Sua5/YciO/YrdC/YwlC family protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471606|gb|ADU28210.1| Sua5/YciO/YrdC/YwlC family protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 343

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 157/311 (50%), Gaps = 19/311 (6%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHL 83
           +AIPTETVYGLA ++ +  A+R ++  K RP  NPLI HV+    + ++ AS+   +  L
Sbjct: 31  VAIPTETVYGLAANALDEAAVRAIFAAKGRPQDNPLIVHVAHPDWLPRYAASIPDAARKL 90

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGHPLAIPSANR 142
              FWPGPLT+VL   ++  + P  +A L TA FR P       +IE  G PLA PSANR
Sbjct: 91  VNAFWPGPLTIVLP--ASPQLAPAVSAGLPTAGFRCPSHPVATAVIEAAGVPLAAPSANR 148

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG  S T   H+L + +   I  ++D G   +G+EST+V +  +    ILRPGG+    L
Sbjct: 149 SGSPSPTAAAHVL-ADLAGRIDAVVDAGPCAVGVESTVVALHGDVP-HILRPGGITPAQL 206

Query: 203 KRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV-- 255
           K  +   E++  V    D+ +   SPGM   HYAP++ V +    ++      R   V  
Sbjct: 207 KAVLGAAEVDPAVLEGLDDAAKAASPGMKYKHYAPKASVTILKGPLDVFVRYTRAHAVDG 266

Query: 256 ------PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGI 309
                   +     +  ++          A  LF  ++  D+ GA ++   +    G+G+
Sbjct: 267 TFALCFDGEETRIGLPCVSYGPARDAAAQARELFGALRALDERGARAVFARAPEETGMGL 326

Query: 310 AINNRLERAAA 320
           A+ NRL RAA 
Sbjct: 327 AVYNRLLRAAG 337


>gi|39958882|ref|XP_364450.1| hypothetical protein MGG_09295 [Magnaporthe oryzae 70-15]
 gi|145013245|gb|EDJ97886.1| hypothetical protein MGG_09295 [Magnaporthe oryzae 70-15]
          Length = 461

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 112/395 (28%), Positives = 165/395 (41%), Gaps = 88/395 (22%)

Query: 11  ALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ALR+A ++L  + +P+  PTETVYGL  D+    A+R +Y  K RP+ NPLI HV D+ M
Sbjct: 65  ALRRAADYLGSSDIPVGFPTETVYGLGADATRSAAVRGIYAAKGRPSDNPLIVHVCDLDM 124

Query: 70  VKKHAS--------------------------------------VDPLSLHLAKLFWPGP 91
           ++   S                                      +  + L L + FWPGP
Sbjct: 125 LRALLSPACDSGNGTNSQAVSEEAAEPATTANGMSNSKTSIDDPIPSIYLPLMERFWPGP 184

Query: 92  LTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITN 150
           LT++L     + + P  TA L T   R+P       LI   G PLA PSAN S + S T 
Sbjct: 185 LTILLPNPQPSRLAPEVTAGLPTFGARMPASPLALTLIRLAGVPLAAPSANASTRPSPTT 244

Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL 210
             H+L   +   + LI+DGG   +G+EST+V+  C+    +LRPGG+ IE L+R    E 
Sbjct: 245 AHHVL-DDLDGRLELILDGGPCGVGVESTVVDGLCDPPA-VLRPGGVAIEDLRRCKGWEG 302

Query: 211 EYCV----------DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGN------ 254
                          +++ P++PGM   HY+PR++V L            R         
Sbjct: 303 VVRAYKDEAELGKSGKSAAPRAPGMKYKHYSPRAKVVLYEAGFGGGAEGDRVREDLDAGR 362

Query: 255 -----------------------------VPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                                        V    IE+    L+L      K+ A  LF+ 
Sbjct: 363 LVVGEDARRPARLGVVRTRSSGDKAGERSVEEYQIEDGTTVLDLHLGRDPKDVAQGLFSA 422

Query: 286 MKIADDSGASSIAFSSIPN-HGLGIAINNRLERAA 319
           ++  D   A  I    + +   +  A+ NRL +AA
Sbjct: 423 LRELDTRTADVICVEGVGDGDDIAAAVMNRLRKAA 457


>gi|319951527|ref|ZP_08025332.1| Sua5/YciO/YrdC/YwlC family protein [Dietzia cinnamea P4]
 gi|319434824|gb|EFV90139.1| Sua5/YciO/YrdC/YwlC family protein [Dietzia cinnamea P4]
          Length = 339

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/309 (33%), Positives = 161/309 (52%), Gaps = 16/309 (5%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTETVYGL  D+ N  A+R+++E+K+RP  +PLI H++D   +    +  P     L
Sbjct: 2   VAFPTETVYGLGADAENAEAVRQVFEVKQRPVTHPLIVHLADPGQLGDWVTEIPGPARVL 61

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
           A+ FWPGPLTLVL       I P+ T    T   RVP     ++L+  +G  +A PSANR
Sbjct: 62  AECFWPGPLTLVLPRSP--RIPPVVTGGCDTVAVRVPHHPVARQLLTAFGGAIAAPSANR 119

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
            G +S T+  H+ +  +   + LI+DG    +G+ESTI++V  ++ + +LRPG + ++ L
Sbjct: 120 FGAVSCTSADHV-ADELGPAVDLILDGRPCPVGIESTIIDVTGDEPI-LLRPGAVGVDDL 177

Query: 203 KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA------LIRFGNVP 256
            RA+   +          ++PG   SHY+PR++V L        EA        R G + 
Sbjct: 178 ARALGRPIHTATSSPGR-RAPGQHPSHYSPRARVILVEESEVVDEARRQQSHGRRIGVLR 236

Query: 257 IKNIENAII---SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
                 + I   +L +     L + A +L+  ++  D      +  S     G+G+AI +
Sbjct: 237 PPATTASTITGNALVIEVPTALGDYARDLYRLLREFDRHDCEVVIASLPTRAGVGLAIAD 296

Query: 314 RLERAAAPR 322
           RL RA+APR
Sbjct: 297 RLTRASAPR 305


>gi|119776125|ref|YP_928865.1| SUA5/YciO/YrdC family translation initiation protein [Shewanella
           amazonensis SB2B]
 gi|119768625|gb|ABM01196.1| translation factor SUA5 [Shewanella amazonensis SB2B]
          Length = 315

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/318 (31%), Positives = 156/318 (49%), Gaps = 11/318 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ +  A   L+ G  +A+PTETVYGLA D+ N  A+ +++ +K RPA NPLI HV+D S
Sbjct: 5   TDQISLAVAALNRGELVAMPTETVYGLAADAGNADAVAKVFALKGRPATNPLIVHVADAS 64

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
            +   A  V   +  L   FWPGPLTLVL   + T +    TA   T   R+P       
Sbjct: 65  WINDWASDVGQDAEALMAAFWPGPLTLVLP--AKTYVSRAVTAGQNTVALRMPAHPQALA 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++ +G  L  PSAN+   IS T+  H+       E+ LI++GG  ++GLESTIV +   
Sbjct: 123 LLKDFGRALVAPSANKYMSISPTSSDHVARQFAGDEL-LILEGGNCRVGLESTIVALLPG 181

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
            + R+LRPG + + +++  +   +     ++    +PG    HY+P           +  
Sbjct: 182 DEPRLLRPGMVSVASIEAVLGRPV---AQQSGGVVAPGQHHKHYSPGLPCYRYGAESDVS 238

Query: 247 EALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
             L++  ++      NA+      +         A  L++ +   D    S+I  +  P+
Sbjct: 239 H-LLQANDIGWIFCGNAVPVAGKAIELGADPDAYAQGLYDALYQLDHETLSAIYIAEPPH 297

Query: 305 HGLGIAINNRLERAAAPR 322
                A+ NRLERAA PR
Sbjct: 298 SSEWQAVQNRLERAAKPR 315


>gi|260655498|ref|ZP_05860986.1| Sua5/YciO/YrdC/YwlC protein [Jonquetella anthropi E3_33 E1]
 gi|260629946|gb|EEX48140.1| Sua5/YciO/YrdC/YwlC protein [Jonquetella anthropi E3_33 E1]
          Length = 319

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/315 (30%), Positives = 142/315 (45%), Gaps = 12/315 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L +A + L  G  +A PTETVYGL  +  +  A +R+Y  K RP+ NPLI H    
Sbjct: 13  DRAVLNRAVKLLSDGRLVAFPTETVYGLGGNGWDSEAAKRIYAAKGRPSDNPLILHFPSP 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
             V+  A V   +  L   FWPGPLTLVL       +       L T   R+P     + 
Sbjct: 73  EAVELSADVSDRAKKLMARFWPGPLTLVLPAKPIVPLA--VRGGLDTVGCRMPSHPTARA 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+     PLA PSAN SG+ S T+   + +  +   + L+ID G   +GLEST++++  +
Sbjct: 131 LLSACPFPLAAPSANVSGRPSPTDAATV-AQDLNGRVDLVIDSGPCSVGLESTVLDITGD 189

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNP 245
             V +LRPGG+ +E L+  +   + +        +SPG    HYAP   V L +A     
Sbjct: 190 APV-LLRPGGVSLEELESVLG-PVAFPRGALELRRSPGTRYRHYAPAVAVLLWKADEPFD 247

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
             +   F       +  A   L       L   A   F  ++  +      I        
Sbjct: 248 WPSQFCFMGQSEPPVRPARQIL----FDDLAAFAHGYFAGLRDLERENLP-IVVQWPDGS 302

Query: 306 GLGIAINNRLERAAA 320
           G+G A+ +RL+R+A 
Sbjct: 303 GIGRALQDRLKRSAG 317


>gi|152981358|ref|YP_001354532.1| hypothetical protein mma_2842 [Janthinobacterium sp. Marseille]
 gi|151281435|gb|ABR89845.1| Uncharacterized conserved protein, putative translation factor
           [Janthinobacterium sp. Marseille]
          Length = 340

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/326 (30%), Positives = 157/326 (48%), Gaps = 19/326 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+R A   L+ G  +A PTETVYGL  D+ NP A+  +Y  K RP+ +P+I H++  
Sbjct: 7   DWPAIRDAARRLEQGELVAFPTETVYGLGADAENPAAVANIYAAKGRPSNHPVIVHLAPE 66

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + +   A SV P +  L  +FWPGPLTL+L       I    +    +   R P     +
Sbjct: 67  ADLNYWAQSVSPDAQKLIAVFWPGPLTLILKR--AVHIPDAVSGGQDSIGLRCPSHPVAQ 124

Query: 126 KLIETY---GHPLAIPSANRSGQISITNVKHILSSSICKE---IPLIIDGGISKIGLEST 179
            L+  +      +A PSAN+ G +S T  +H+ +         +  I+DGG S++G+EST
Sbjct: 125 ALLRAFKDGKGGVAAPSANKFGHVSPTTAQHVHNEFGGDAGSLLTCILDGGQSEVGIEST 184

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           IV++     V +LRPG +  E +   I         + + P++ G L+SHYAP + V L 
Sbjct: 185 IVDMSRGHAV-LLRPGHISAEQIAAVIGY--LPASPDQAAPRASGTLESHYAPLTPVVLV 241

Query: 240 AIH----VNPREALIRFGNVPIKNIENA--IISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
                  V  +  L       ++   +A  +++ ++S        A +L+  ++  DD  
Sbjct: 242 DGEHLLAVLQKLNLRGRRAALMQYAVDAMPLVAASISLPDTPIAYAHDLYAALRAMDDVH 301

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
           A  I   + P       +N+RL RAA
Sbjct: 302 ADVIVVQTPPTDVAWSGVNDRLRRAA 327


>gi|317121006|ref|YP_004101009.1| translation factor SUA5 [Thermaerobacter marianensis DSM 12885]
 gi|315590986|gb|ADU50282.1| translation factor SUA5 [Thermaerobacter marianensis DSM 12885]
          Length = 386

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 168/355 (47%), Gaps = 45/355 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+ A+R A   L  G  +A PTETVYGL  D+ N  A+ R++  K RPA NPLI HV+  
Sbjct: 21  DAAAIRHAGAVLRRGGLVAFPTETVYGLGADALNAQAVVRIFAAKGRPADNPLIVHVTGP 80

Query: 68  SMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            M      A+    +  L   FWPGPLTLVL   +   +     A L T   R P     
Sbjct: 81  EMAGPAVVAAWPDAARRLVDRFWPGPLTLVLP--AGPAVPAAVRAGLPTVAVRCPAHPVA 138

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G P+A PSANRSG+ S T    +  + +   + +++D G   +G+EST+V+V 
Sbjct: 139 QALIAAAGTPVAAPSANRSGRPSPTRAGDVW-ADLGPHLDVLLDAGPVPVGVESTVVDVT 197

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLR--- 239
                R+LRPGGL +E L+RA+ V L     ++  S   +PGM   HYAP + V L    
Sbjct: 198 TW-PPRLLRPGGLPVEDLERALGVALAPPPRLEAASAAPAPGMKYRHYAPEAPVMLVDEP 256

Query: 240 AIHVNPREALIRFGN---------------------------------VPIKNIENAIIS 266
           A  V P    +  G                                      +  + +++
Sbjct: 257 AAGVEPVRRWLAAGQRVALVGCREDLEALLDRAGLAAAWPDPWDERAGAGGADDPSPVVA 316

Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
           L+L    +  E A  LF  ++ AD +GA+ I   ++P  GLG A+ NRL +AAA 
Sbjct: 317 LDLGPRARPDEQARRLFRALRAADAAGATRILALAVPEVGLGRAVMNRLRKAAAG 371


>gi|224824251|ref|ZP_03697359.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002]
 gi|224603670|gb|EEG09845.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002]
          Length = 320

 Score =  283 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/324 (29%), Positives = 155/324 (47%), Gaps = 24/324 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    + +A   L  G  +A+PTETVYGLA  + +P AI +++  K RPA +PLI H+ D
Sbjct: 6   THPEHIDRAARLLREGGLVALPTETVYGLAACAEDPQAIAKVFSAKGRPADHPLIVHLPD 65

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           ++ + + A  +  ++  LA+ FWPGPLTLVL       + PL T    T   R       
Sbjct: 66  LAHLTRWACRIPSVAFRLAEAFWPGPLTLVLPAAPA--VSPLITGGQDTIAVRWSAHPLF 123

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +++  G  +  PSAN  G IS T+  H+L   +   I  ++DGG  ++G+ESTI+++ 
Sbjct: 124 QAVLDQLGSAVVAPSANPFGHISPTSAAHVLKH-MEGRIDAVLDGGDCRVGVESTILDLS 182

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-------- 236
              + +ILRPG +    L   + +           P+ PG L SHYAPR           
Sbjct: 183 G-PEAKILRPGCIGASQLAAYLPLVERPAAP---APRVPGALDSHYAPRLPCHRFEHDER 238

Query: 237 -RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
             L     + + A I F  +P+    + ++             A  ++  +  A+ SG+ 
Sbjct: 239 AYLSQGVPSGKCAFIGFRELPMSTHRSYLL------PADPAAYASQIYAVLHQAESSGSE 292

Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319
           SI     P+    + + +RL RA+
Sbjct: 293 SILIEMPPDTPEWLHVRDRLLRAS 316


>gi|283781887|ref|YP_003372642.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068]
 gi|283440340|gb|ADB18782.1| Sua5/YciO/YrdC/YwlC family protein [Pirellula staleyi DSM 6068]
          Length = 345

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/338 (33%), Positives = 163/338 (48%), Gaps = 24/338 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I     + +  + L AG  +AIPTETVYGLA D+ NP A+R+++  K RPA +PLI H+
Sbjct: 15  PIVSDEIIARGAQLLAAGELVAIPTETVYGLAADATNPMAVRKIFAAKGRPADHPLIVHI 74

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +    + +    + P +  LA  FWPGPLT+++   S  D   +    L T   R P   
Sbjct: 75  AYPDEIDRWGTEIPPAAWDLAAAFWPGPLTMIVRRRSNVDS--VVAGGLDTIAVRCPSHP 132

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++L+   G  +A PSAN+ G +S T   H+L+      +PL+IDGG  ++GLESTIV+
Sbjct: 133 VAQRLLRELGRGVAAPSANKFGHVSPTTAAHVLAE-FGDTLPLVIDGGACEVGLESTIVD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR----- 237
           +  +    ILRPG +    L+  + + +       STP S G L SHYAP   V      
Sbjct: 192 L-SQSTPTILRPGAISQTDLELVLGLAIGDP-HANSTPCS-GRLASHYAPNCIVEIVTEE 248

Query: 238 --------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                   L A            G+V       A   + L    KL   A  L+  ++ A
Sbjct: 249 ELTSKLASLDASGRRVGLLATEEGSVRALAALPADRIVWLPSDAKL--YARGLYGALRAA 306

Query: 290 DDSGASSIAFSSIP-NHGLGIAINNRLERAAAPRNQSQ 326
           D+ G       S P  H L  AI +RL++AA PR+  +
Sbjct: 307 DERGFDHFLVVSPPLGHPLSAAILDRLQKAAGPRDSRR 344


>gi|30248949|ref|NP_841019.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas europaea ATCC
           19718]
 gi|30138566|emb|CAD84857.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Nitrosomonas europaea ATCC 19718]
          Length = 339

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/329 (30%), Positives = 166/329 (50%), Gaps = 28/329 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +A   L +G  +A PTETVYGL  D   P AI++++EIK RP+ +PLI H +++S 
Sbjct: 14  KQITQAVMSLRSGNVVAFPTETVYGLGADISQPQAIQKIFEIKGRPSSHPLIVHFANLSE 73

Query: 70  VKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           ++  A   P  +  LA+ FWPGPLTL+L    +  I    T   +T   R+P      KL
Sbjct: 74  LEFWAENIPATAWILAQHFWPGPLTLILT--KSNHIPLSVTGGQETVGLRIPRHPIALKL 131

Query: 128 IETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +E  G    LA PSANR G +S T   H+  ++   +I +I+DGG  ++GLESTIV+   
Sbjct: 132 LEQLGSCKALAAPSANRFGFVSPTIADHV-KNAFNDKIEVILDGGPCEVGLESTIVSCI- 189

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
           +K V ILRPGG+ + +++  +  ++   V   +  ++PG L SHYA  + + +     + 
Sbjct: 190 DKDVTILRPGGISVLSIENLLQQKV--SVKSQNKIRTPGSLSSHYATATPLEIC---QSS 244

Query: 246 REALIRFGNVPIKNIENAIISLNLS---------------KTGKLKEAAFNLFNYMKIAD 290
                R  ++  + I  A+I  ++                          +L+  ++  D
Sbjct: 245 ESLFSRSFDLLQQGIRTAVIIRSIHLIPMLNSDDKFHYILMPNDPVAFGKDLYATLRKLD 304

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319
           D+    I   + P+    +A+ +RL RA+
Sbjct: 305 DANFERILVEAPPDDLEWLAVADRLSRAS 333


>gi|91762257|ref|ZP_01264222.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718059|gb|EAS84709.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 310

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 9/314 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ + ++KA ++LD    I +PTETVYGLA ++   +A++++Y +KKRP  NPLI H  D
Sbjct: 3   SNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHD 62

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           I  +KK   ++   + L K F PGP+T VL L   + I    T N K+   R P     K
Sbjct: 63  IDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFK 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L++   +PLA PSAN + ++S  N K +      K+I  I+DGG   IG+ESTIVN+  
Sbjct: 123 NLLKQLDYPLAAPSANITTKVSAVNAKDV-KEEFGKKIKYILDGGTCAIGIESTIVNLTA 181

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             K  ILR GGL+I  +++A+  ++    +      +PG  + HY+P   +R+       
Sbjct: 182 --KPTILRLGGLDISKIQKALGFKMNISTNPKKKI-APGQSRLHYSPGIPLRMNVTKPKN 238

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA I       K          L+    L EAA  L++ ++   + G  SIA   IPN 
Sbjct: 239 DEAFIIIKKKKTKPKN----YFYLTSKSNLDEAAKKLYSCLRKIKNEGYKSIAVEKIPNI 294

Query: 306 GLGIAINNRLERAA 319
           GLG AIN+RL RA+
Sbjct: 295 GLGKAINDRLRRAS 308


>gi|319943122|ref|ZP_08017405.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599]
 gi|319743664|gb|EFV96068.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599]
          Length = 348

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/344 (32%), Positives = 165/344 (47%), Gaps = 33/344 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++TD+  L +A   L AG  I +PTETVYGLA ++ +  A+  +Y IK RPA +PLI HV
Sbjct: 8   TMTDAP-LAEAAAVLQAGGVIGLPTETVYGLAANAADEQAVTSIYRIKGRPADHPLIVHV 66

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +D    ++ A   P +  LA  FWPGPLTLVL   +     P ++A   T   RV     
Sbjct: 67  ADALAAQQWAEWTPAAQRLADAFWPGPLTLVLRRRAGA--PPFASAGQDTIALRVSSHPV 124

Query: 125 KKLIETYGHPL-----AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            + +     P+     A PSANR G+IS +   H+  S +   +PL++DGG S++G+EST
Sbjct: 125 FQRLMQALAPVGITGLAAPSANRFGRISPSRAAHV-RSGLGSAVPLVLDGGPSEVGVEST 183

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY----CVDETSTPQSPGMLKSHYAPRSQ 235
           IV++     V +LRPGG+ ++ L   +   +         E   P+ PG L SHYAP   
Sbjct: 184 IVDLSRGAPV-LLRPGGISLQALADCLGQPVRAADSQATREADAPRVPGALPSHYAPSVP 242

Query: 236 VRLR----------------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKE-- 277
           +RL                 +    P    +  G + +   E       L    +  E  
Sbjct: 243 LRLLSAGALAALLQQRATALSAAQTPVIDGLPMGRIAVWRPEPPPEQPGLFWRCQPTEVA 302

Query: 278 -AAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            AA +L++ +   D  G  +I     P      A+ +RL+RAAA
Sbjct: 303 LAARHLYDTLHQLDALGVDAILVEQPPAEPAWRAVQDRLQRAAA 346


>gi|332185534|ref|ZP_08387282.1| SUA5 domain protein [Sphingomonas sp. S17]
 gi|332014512|gb|EGI56569.1| SUA5 domain protein [Sphingomonas sp. S17]
          Length = 311

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 124/298 (41%), Positives = 163/298 (54%), Gaps = 17/298 (5%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82
             +A+PTETVYGLA D+  P A+ R+Y  K RP+ NPLI HV D++  ++ A  D  +L 
Sbjct: 28  GIVAVPTETVYGLAADATEPQAVARIYAAKGRPSFNPLIVHVPDLAAARELAEFDADALA 87

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSAN 141
           LA+ FWPGPLTLV  L +   I  L TA L T   RVP     + L+   G PLA PSAN
Sbjct: 88  LAEAFWPGPLTLVRPLRAGAGIASLVTAGLDTVAIRVPRHRAMQALLAASGRPLAAPSAN 147

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG IS T   H+  +S+   +P I+D G ++ GLESTIV  +      ILRPG +    
Sbjct: 148 ASGGISPTRAAHV-RASLGPAVP-ILDDGATEAGLESTIVAGRT-----ILRPGPVTGTM 200

Query: 202 LKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIE 261
           L + +   +E   +  +   +PG L SHYAPR  +RL        E LI FG V  ++  
Sbjct: 201 LAKVLG-SVEQGPEAPAIVTAPGQLASHYAPRKPLRLNVTEAAADEWLIGFGAVEGQDT- 258

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                  LS  G   EAA  LF+ +  AD S    +A + IP  G+G AIN+RL RAA
Sbjct: 259 -------LSAIGDPVEAAARLFDALHRADASDPPRLAVAPIPVDGIGEAINDRLRRAA 309


>gi|34498673|ref|NP_902888.1| Sua5 family translation factor [Chromobacterium violaceum ATCC
           12472]
 gi|34104526|gb|AAQ60884.1| probable translation initiation protein, Sua5/YciO/YrdC family
           [Chromobacterium violaceum ATCC 12472]
          Length = 321

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 101/324 (31%), Positives = 155/324 (47%), Gaps = 13/324 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ +S T    L +A   L AG  +A+PTETVYGLA D+  P A+  ++  K RPA +PL
Sbjct: 1   MKSLSPT-PEGLDQAAALLRAGELVAVPTETVYGLAADATQPDAVAAIFRAKNRPADHPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+  +  + + AS V   +  + + FWPGPLTLVL   ++  +  +  A   T   R 
Sbjct: 60  IVHLPGLEQLNEWASRVPDCAWPVIERFWPGPLTLVLP--ASEKVPAIVNAGQDTVALRW 117

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 + L++    P+A PSAN   +IS T  +H+  +++   I  ++DGG   +G+ES
Sbjct: 118 SSHPLLQALLDRLQRPVAAPSANPFCRISPTTAEHV-RANMEGRIAAVVDGGPCAVGIES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-R 237
           TI+++   +   ILRPG +    L   + +      D    P+ PG L SHYAP     R
Sbjct: 177 TILDLSGARPA-ILRPGAVTAAMLAPYLDLAETAAPD---APRVPGNLASHYAPHQPCYR 232

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT--GKLKEAAFNLFNYMKIADDSGAS 295
           L A     R     +    +  I+         K      +  A  L+  +  AD SG  
Sbjct: 233 LEAAEAEERADDAGWRQAAVLAIDAPAARCGWLKRMPPTPEGYAQALYAALHQADASGCP 292

Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319
           S+     P+     A+ +RL+RAA
Sbjct: 293 SVWIVLPPDEPAWRAVRDRLQRAA 316


>gi|255993957|ref|ZP_05427092.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saphenum ATCC
           49989]
 gi|255993625|gb|EEU03714.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium saphenum ATCC
           49989]
          Length = 339

 Score =  281 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 162/333 (48%), Gaps = 30/333 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + KA   +  G  +A PTETVYGL  ++ +P AI ++Y+ K RP+ NPLI H+SDI
Sbjct: 9   DKEGMEKAANIIRTGGTVAFPTETVYGLGANALDPDAIEKIYKAKGRPSDNPLIVHISDI 68

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S ++  A  VD   L +A  FWPGPLTLV     + DI    T  L T   R+P     +
Sbjct: 69  SELQGVASDVDKHILAIANEFWPGPLTLVC--KKSADIPDQVTGGLDTVAVRMPSSSIAR 126

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I + G P+A PSAN+SG+ S T+  H++   +  +I  +I G  S IG+EST+++V  
Sbjct: 127 EFIRSAGVPIAAPSANKSGKPSPTSTSHVI-DDLNGKIDAVIMGDDSDIGIESTVISVTG 185

Query: 186 EKKVRILRPGGLEIETLKRAI---SVELEYCVDETST---------PQSPGMLKSHYAPR 233
             KV +LRPG +    ++  +     +L    D +++         P+SPG+   HY+P 
Sbjct: 186 -GKVNVLRPGVIGEVEIRGCLEKSGYKLSSGFDGSASDERKSMKDVPKSPGVKYKHYSPN 244

Query: 234 SQVRLRAIH----VNPREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKI 288
            +  +           R ++I        + E  ++   NLS    + +     ++ ++ 
Sbjct: 245 CECFVVVGSAGDMDRMRGSVITQKFSGFFDKETRVLDFMNLSTQDVINKI----YHSLRK 300

Query: 289 ADDSGASS--IAFSSIPNHGLGIAINNRLERAA 319
            D+       I            A+ NRL +AA
Sbjct: 301 LDEDNIKRALIFIKK-DATPEYEALMNRLHKAA 332


>gi|297618444|ref|YP_003703603.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297146281|gb|ADI03038.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 336

 Score =  281 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 27/327 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +++ + +A   +  G  +A PTETVYGL  D+ N  A+ +++  K R   NPLI H+S++
Sbjct: 17  EASVIAEAAALIRKGEVVAFPTETVYGLGADAFNEEAVCKIFIAKGRQPDNPLIVHISNM 76

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           S V      V   +  L   FWPGPLTLV++ L +  +   + A   T   R+P      
Sbjct: 77  SQVSALIKSVPDEARLLMDRFWPGPLTLVMESLPS--VASAARAGGNTVGVRMPRHPVAL 134

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G PLA PSAN SG+ S T  +H+  + +   I  I+D G + +G+EST++++  
Sbjct: 135 ALIDEAG-PLAAPSANLSGRPSPTTPEHV-KNDLDGRISAILDAGPTGMGIESTVLDMT- 191

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL------- 238
           +K  RILRPGG+ +E L+  +   +     ET+  + P     HY  R++V L       
Sbjct: 192 QKPFRILRPGGISLEELEEVLPGMV-----ETAEAKGPADRYPHYQTRARVILLSEPADV 246

Query: 239 -----RAIHVNPREALIRFGNVPIKNIE-NAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
                       +  L+       ++IE  + +   L  +   +EA   L+  ++ AD  
Sbjct: 247 ASALHEYKKQGKKVGLVAHSYEEYRHIEKESDLVYWLPPSA--EEAGKRLYAVLRDADQR 304

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAA 319
           G   + F   P  G G A+  RL++++
Sbjct: 305 GLDILFFEPYPEEGKGSALMYRLKKSS 331


>gi|169783792|ref|XP_001826358.1| protein SUA5 [Aspergillus oryzae RIB40]
 gi|238493617|ref|XP_002378045.1| translation initiation protein Sua5 [Aspergillus flavus NRRL3357]
 gi|83775102|dbj|BAE65225.1| unnamed protein product [Aspergillus oryzae]
 gi|220696539|gb|EED52881.1| translation initiation protein Sua5 [Aspergillus flavus NRRL3357]
          Length = 434

 Score =  281 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 156/377 (41%), Gaps = 83/377 (22%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75
           P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H+  + M+++  +        
Sbjct: 56  PVAFPTETVYGLGADATRSDAVQGIYKAKQRPSDNPLIVHIDSLEMLERLLNPQESGSTS 115

Query: 76  --------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
                   +  +   L   FWPGPLT++L   S + +    T+ L T   R+P     + 
Sbjct: 116 ASDSPRNTIPSVYQSLIARFWPGPLTILLPNPSGSLLAKEVTSKLTTFGARMPSSPLARL 175

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI     PLA PSAN S + S T  +H+    +   I LI+DGG   +G+EST+V+  C+
Sbjct: 176 LIHVADRPLAAPSANASTKPSPTAAEHVY-HDLQGRIELILDGGSCGVGVESTVVDGLCD 234

Query: 187 KKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRL-- 238
               ILRPGG+ IE ++     E       +  +D    P++PGM   HY+P+++V L  
Sbjct: 235 PPA-ILRPGGIGIEEIRTCAGWENVQLGYHDGTLDVKEIPRAPGMKYRHYSPKARVVLFE 293

Query: 239 ------------RAIHVNPREALIRFGNVPIKNIENAII--------------------- 265
                       R    +        G V  K+ +  +                      
Sbjct: 294 AGSKEQSVTKHIRKDLEDTAIGAHMIGIVRTKHWKRGLGLLSDEEIEKTLKPLPSLIDGL 353

Query: 266 -------------------SLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
                              + +      ++  A  LF  ++  D+     I    I +  
Sbjct: 354 AGFSVPITGNPGRSPAFKEAFDCHLGPDVESIARGLFAALRAMDEMEVDVIYVEGISDQQ 413

Query: 307 LG---IAINNRLERAAA 320
            G    A+ NRL +AA 
Sbjct: 414 -GDRAAAVMNRLRKAAG 429


>gi|302665561|ref|XP_003024390.1| hypothetical protein TRV_01457 [Trichophyton verrucosum HKI 0517]
 gi|291188442|gb|EFE43779.1| hypothetical protein TRV_01457 [Trichophyton verrucosum HKI 0517]
          Length = 445

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 169/393 (43%), Gaps = 85/393 (21%)

Query: 10  NALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A + +  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALLEAAKAIRTSDIPVAFPTETVYGLGADATRSGAVQGIYKAKQRPSDNPLIVHVSSRD 106

Query: 69  MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++                 + +  +   L + FWPGPL+++L   S   + P  TANL
Sbjct: 107 QLERLLVDPKQSNGAIKCHSTSPIPKIYEPLIERFWPGPLSIILPNPSHLPLAPEVTANL 166

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+ +  +   I +I+DGG 
Sbjct: 167 PTFAARMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVFTD-LQGRIEMILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   + P++PGM
Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWEDVQIGYKDGALQGKTAPRAPGM 284

Query: 226 LKSHYAPRSQVRLRAIHVNPREALIR-----------------FGNVPIKNIENAIISLN 268
              HY+P+++V L     NP   + R                  G V  K  +  +   +
Sbjct: 285 KYKHYSPKARVVLFEPGQNPASVMNRIIADINKQPEWANESAAIGVVRTKTWKKGLGISH 344

Query: 269 LSKTG---------------------KLKEAAFN-------------------LFNYMKI 288
           +S +                       L  A+ +                   LF+ ++ 
Sbjct: 345 VSLSNGESCEATTPAIGSILDIPIECDLINASSHRINMLDINLGQDTSSIARGLFSALRS 404

Query: 289 ADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
            D+     I    I +    L  A+ NRL +AA
Sbjct: 405 LDERNVPVIYVEGISDTEGDLAAAVMNRLRKAA 437


>gi|218673734|ref|ZP_03523403.1| probable translation factor protein [Rhizobium etli GR56]
          Length = 277

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 128/256 (50%), Positives = 166/256 (64%), Gaps = 2/256 (0%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH++D++M + HA  DP+S
Sbjct: 24  DGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICHMADLAMAEHHAEFDPVS 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             LA+ FWPGPLTLVL L + + IH L+TA L +   RVP GF   LI  +G PLA PSA
Sbjct: 84  RALAEAFWPGPLTLVLPLKAESPIHSLATAGLDSVGVRVPKGFAGALIGAFGRPLAAPSA 143

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG IS T+  H+  + +  +IPLI+D G S +G+ESTIV V+ + +VR+LRPGGL   
Sbjct: 144 NTSGAISATSAAHV-EADLGAKIPLILDAGPSTVGVESTIVKVEGD-RVRLLRPGGLAAR 201

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
            ++R     L      ++  ++PGML SHYAP + VRL A  V P EALI FG   ++  
Sbjct: 202 EIERIAGRPLLRAKKASAAIEAPGMLASHYAPGASVRLNASAVEPGEALIAFGGAAVEGA 261

Query: 261 ENAIISLNLSKTGKLK 276
            +A I L+LS  G L 
Sbjct: 262 RDARIVLDLSPRGDLA 277


>gi|73668440|ref|YP_304455.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro]
 gi|72395602|gb|AAZ69875.1| translation factor SUA5 [Methanosarcina barkeri str. Fusaro]
          Length = 367

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/354 (29%), Positives = 161/354 (45%), Gaps = 40/354 (11%)

Query: 3   IMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +  +++ N    L +A   +  G  +A PTETVYGL  D  NP A+ +++E KKRP  NP
Sbjct: 13  VFRVSEENFDSVLERASAIIKRGGTVAFPTETVYGLGADGLNPEAVMKIFEAKKRPPGNP 72

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           L   V     V+K A ++   +  L   FWPGPLT++L+      +  +++  LK+   R
Sbjct: 73  LSLLVHSREDVEKVARNIPESAFRLMNAFWPGPLTIILE--KNDIVPDITSGRLKSIGVR 130

Query: 119 VPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P       LI+  G PLA PSAN SG+ S +   H++S  +   I  I+DGG + IGLE
Sbjct: 131 MPDHRVPLDLIKRAGTPLAAPSANLSGKPSPSLAAHVISD-LTGRIDAILDGGEAAIGLE 189

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-----TPQSPGMLKSHYA 231
           ST++++  E  V +LRPG +  E L+  I  V   Y   E       + +  G    HY 
Sbjct: 190 STVIDMTVEPPV-VLRPGAVSFEELESIIGKVRPGYKNGENGDKSDLSEKKAGQKYGHYI 248

Query: 232 PRSQVRLRAIH------------VNPREALIRFGNVPIKNIE------------NAIISL 267
           P ++V L                 + R    + G +  +               +    L
Sbjct: 249 PDTKVVLVEGEGKSVSGQLVKLLESYRSEGAKVGLLLSEETSKETAPLLALKNLSPDECL 308

Query: 268 NLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIAINNRLERAAA 320
            L    +   AA  LF  +++ D  G   I       + GLG A+ NRL  A++
Sbjct: 309 LLGPREEPDVAARKLFEGLRMLDKKGLDVIVADGSFSHSGLGEALINRLREASS 362


>gi|86608509|ref|YP_477271.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557051|gb|ABD02008.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 363

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/361 (29%), Positives = 172/361 (47%), Gaps = 46/361 (12%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+S T  + +  A   L  G  +AIPTETVYGLA +  +  A+  ++  K+RP  +PLI
Sbjct: 4   EILSPTPEH-IAVAAAALLRGQLVAIPTETVYGLAGNGLDEQAVANIFAAKERPRFDPLI 62

Query: 62  CHVS---DISMVKKH----ASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTA 110
            H+     +  ++      ++  P +  L       FWPGPLTLVL    T  +  L ++
Sbjct: 63  LHLPAGVTLEQLQGWLVDVSAFTPAARALLGSLIDTFWPGPLTLVLPKCPT--VPDLVSS 120

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   RVP     + L++    PLA PSANR G+IS T+ + + +  +   IP I+DG
Sbjct: 121 GLPTVALRVPAHPVAQALLQAVQTPLAAPSANRFGRISPTSAQAVYAE-LGGRIPYILDG 179

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST------PQSP 223
           G   +GLEST++ +  E    +LRPGG+ +E L+  + + +    ++         P++P
Sbjct: 180 GECAVGLESTVLKLSPEGIPTLLRPGGIPLEALEAHLGLPIRLPPEQAPKDGTTGPPEAP 239

Query: 224 GMLKSHYAPRSQVRL-----------------RAIHVNPREALIRFGNVPIKNI-----E 261
           G L SHYAP   +RL                      +    ++ F   P   +      
Sbjct: 240 GRLSSHYAPSKPLRLLPTPFAQLQPGDWQQVQHLTTGHSHLGILSFATDPQALLNTLSRH 299

Query: 262 NAIISLNLSKTG-KLKEAAFNLFNYMKIADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319
              I+ +L   G   K AA  LF  ++  D+  A+ +     P + GLG A+ +RL RA+
Sbjct: 300 WPGITFSLECLGSDPKAAARALFASLRRLDEGDATLLLAEPPPISTGLGYAMMDRLRRAS 359

Query: 320 A 320
           +
Sbjct: 360 S 360


>gi|189183849|ref|YP_001937634.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda]
 gi|189180620|dbj|BAG40400.1| Sua5/YciO/YrdC family protein [Orientia tsutsugamushi str. Ikeda]
          Length = 322

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/311 (34%), Positives = 163/311 (52%), Gaps = 13/311 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A +F++ G  +  PTETVYG+  D+ N  A + +Y IK RP  NPLI HV++I   +   
Sbjct: 15  AAQFIEQGKLVIFPTETVYGIGADATNDNACQNIYRIKNRPTNNPLIIHVNNIQAAQTIG 74

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
             + L++ LA   WPGP++LV+ L  +  I   +TANL T   R+P   T   L++    
Sbjct: 75  IFNKLAIKLA-TLWPGPISLVVPLNQSAGISRTATANLDTVAIRIPAHKTALTLLQLTQK 133

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A PSAN SG +S T  +H            I+ G  S  GLESTI++   ++ + ILR
Sbjct: 134 PIAAPSANPSGYLSPTTYQHANIHFQNSPNTFILKGTQSTYGLESTIIDTTTDRPI-ILR 192

Query: 194 PGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFG 253
            G +  E +K              +  ++PGM+  HY+P +++RL A  + P+E  + +G
Sbjct: 193 HGFITTEIIKTITGQNPIISKKHNNFLKAPGMMLKHYSPITKIRLNATKLLPKEVGLNYG 252

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD------SGASSIAFSSIPNHGL 307
                N       LNLS    L  AA NL++ +   D+      +   +IA + IPN G+
Sbjct: 253 ----PNTLTGKYCLNLSPNSNLMNAAANLYHMLHQLDNYAQNPINEVETIAIAQIPNIGI 308

Query: 308 GIAINNRLERA 318
           GIAIN++L RA
Sbjct: 309 GIAINDKLNRA 319


>gi|330999106|ref|ZP_08322827.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329575495|gb|EGG57034.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 334

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/330 (31%), Positives = 156/330 (47%), Gaps = 21/330 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L KA + L+AG  +AIPTETVYGLA D+ N  A++ +Y  K RPA +PLI HV+    
Sbjct: 3   SDLEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASAEA 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +   A  +   +  L + FWPGPLT+VL   +        T    T   R P      +L
Sbjct: 63  LPYWAREIPEDAKKLTEAFWPGPLTIVLKRSAHAK--DFVTGGQDTVALRCPSHPLVHEL 120

Query: 128 IETY----GHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTI 180
           ++ +    G  LA PSAN  G+IS T  +H+   L      +   I+DGG   +G+ESTI
Sbjct: 121 LKRFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +++  E   RILR G +  E + + I   +E+     ++P+  G +KSHYAP   +++ +
Sbjct: 181 LDLTGETP-RILREGDVSGEMISKVIGKPVEHGAV-GASPRVSGSMKSHYAPEHVLKIVS 238

Query: 241 IHVNPREA------LIRFGNVPIKNIENAIISLNLSKTG--KLKEAAFNLFNYMKIADDS 292
               P E          F  +  + I     ++     G    KE   NL+ ++   D  
Sbjct: 239 ADDLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRD 298

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           G   I             + +RL RAAA R
Sbjct: 299 GGDVIFAVEPELTDSSAGVLDRLTRAAAER 328


>gi|223937828|ref|ZP_03629728.1| Sua5/YciO/YrdC/YwlC family protein [bacterium Ellin514]
 gi|223893434|gb|EEF59895.1| Sua5/YciO/YrdC/YwlC family protein [bacterium Ellin514]
          Length = 388

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/329 (34%), Positives = 175/329 (53%), Gaps = 23/329 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+++A E L AG  +A+PTETVYGLA ++ +  A+ R++E K RPA NP+I HV+DI 
Sbjct: 64  QKAVKRAAELLRAGELVALPTETVYGLAANALDAAAVGRIFEAKGRPAHNPIIVHVADIE 123

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           M +   S  P+ +  LA+ FWPGPLTLVL    +  I  + TA   T   R P   F + 
Sbjct: 124 MARACVSEWPVQAEKLARAFWPGPLTLVLPRAES--IPDIVTAGGSTVGLRWPSHPFIQA 181

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I   G PLA PSAN S QIS TN +H+ S  +   I LI+DGG S++G+EST++++   
Sbjct: 182 VIRECGFPLAAPSANPSNQISPTNAEHV-SKGLGTRIKLIVDGGQSQVGIESTVLDISVS 240

Query: 187 KKVRILRPGGLEIETLKRAISVE-----LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
              R+LRPG +  E L+ A+  E           +    +SPG LK HY+P++++ + + 
Sbjct: 241 -PARVLRPGMIREEALQAALPAETVLSQTSKKGTKAEIIKSPGQLKKHYSPKARLEILSW 299

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTG-----------KLKEAAFNLFNYMKIAD 290
              P   L +     I   +  +I+  +  +              +  A  ++  +   D
Sbjct: 300 ENEPDF-LSQIARRKIAAEKIQVIAHTVIPSAGRFGGVSVIPHDAEAFARAIYAELHRCD 358

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319
           ++GA  I   ++P      AI +RL+RAA
Sbjct: 359 EAGAELIIVEALPESSEWQAIADRLKRAA 387


>gi|254296311|ref|ZP_04963768.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e]
 gi|157805879|gb|EDO83049.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e]
          Length = 341

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 153/331 (46%), Gaps = 24/331 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244

Query: 240 AIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
           A   + P  A  R    P+             +A     ++        A  L+  ++  
Sbjct: 245 AFERLEPLLAAARDTGEPVALVARASRAGAWAHAAGVHFVAAPEDPAAYARELYGLLRAL 304

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D +  + I    +P+     A+N+RL RAAA
Sbjct: 305 DRAQVARILVEKLPDTAEWTAVNDRLGRAAA 335


>gi|303256757|ref|ZP_07342771.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium
           1_1_47]
 gi|302860248|gb|EFL83325.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium
           1_1_47]
          Length = 334

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/330 (31%), Positives = 156/330 (47%), Gaps = 21/330 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L KA + L+AG  +AIPTETVYGLA D+ N  A++ +Y  K RPA +PLI HV+    
Sbjct: 3   SDLEKAVKILEAGGLVAIPTETVYGLAADAENEAAVKSIYAAKNRPATHPLIVHVASAKA 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +   A  +   +  L + FWPGPLT+VL   +        T    T   R P      +L
Sbjct: 63  LPYWAREIPEDAKKLTEAFWPGPLTIVLKRSAHAK--DFVTGGQDTVALRCPSHPLAHEL 120

Query: 128 IETY----GHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTI 180
           ++ +    G  LA PSAN  G+IS T  +H+   L      +   I+DGG   +G+ESTI
Sbjct: 121 LKRFDAGKGRGLAAPSANTFGKISPTTAQHVRDDLGEKPDGKTDFILDGGECTVGIESTI 180

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           +++  E   RILR G +  E + + I   +E+     ++P+  G +KSHYAP   +++ +
Sbjct: 181 LDLTGETP-RILREGDVSGEMISKVIGKPVEHGAV-GASPRVSGSMKSHYAPEHVLKIVS 238

Query: 241 IHVNPREA------LIRFGNVPIKNIENAIISLNLSKTG--KLKEAAFNLFNYMKIADDS 292
               P E          F  +  + I     ++     G    KE   NL+ ++   D  
Sbjct: 239 ADDLPGETQFLARHFKTFSLIAPEKIAKRFSTVAEKVRGYKDAKELQVNLYKWLHELDRD 298

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           G   I             + +RL RAAA R
Sbjct: 299 GGDVIFAVEPELTDSSAGVLDRLTRAAAER 328


>gi|229823148|ref|ZP_04449217.1| hypothetical protein GCWU000282_00445 [Catonella morbi ATCC 51271]
 gi|229787314|gb|EEP23428.1| hypothetical protein GCWU000282_00445 [Catonella morbi ATCC 51271]
          Length = 340

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 96/330 (29%), Positives = 153/330 (46%), Gaps = 24/330 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L +A   L  G  +A PTETVYGL   +    A+ ++++ K RP+ NPLI HV D   V
Sbjct: 10  ELDEAAALLRRGELVAFPTETVYGLGAIATKEQAVAKVFQAKGRPSDNPLIVHVKDAQQV 69

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128
             + A V  L+  L + FWPGPLT++L +               T  FR+P      +LI
Sbjct: 70  LDYAAEVPELAKELMERFWPGPLTIILPVKPGV-FPANVNNGQDTVAFRMPNQQSALRLI 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQCE 186
           +  G PL  PSAN SG+ S T+V H++       I  ++  D   ++IG+EST+V    +
Sbjct: 129 DLVGTPLVGPSANLSGKPSPTSVDHVM-QDFDGLIAGVVAGDTDQAQIGVESTVVRPMAD 187

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDET-STP--QSPGMLKSHYAPRSQVRLRA--- 240
            ++ ILRPG +    L +      E+ V E  + P  QSPG+   HY+P+ +V L     
Sbjct: 188 -RLVILRPGAITQSMLAQVCPNVQEFSVAEQLAAPHLQSPGVKYRHYSPKQEVYLFEATE 246

Query: 241 ---------IHVNPREALIRFGNV--PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                    +    +  L+   ++   + +    + + +L +      A   L+  ++  
Sbjct: 247 DRARLRAKLVAKGGKVGLLADDSIIQALGHQSPVVATYSLGQPHDAVSATRQLYAGLRAL 306

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           + SG   I   +  +     A  NRL +AA
Sbjct: 307 EASGCDWILAQATLDSEKYHAYMNRLNKAA 336


>gi|302830981|ref|XP_002947056.1| hypothetical protein VOLCADRAFT_56845 [Volvox carteri f.
           nagariensis]
 gi|300267463|gb|EFJ51646.1| hypothetical protein VOLCADRAFT_56845 [Volvox carteri f.
           nagariensis]
          Length = 374

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 100/324 (30%), Positives = 151/324 (46%), Gaps = 29/324 (8%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA----SVD 77
           G  +AIPTETVYGLA ++ +  A+ R+Y  K RPA NPLI HVS + M+        ++ 
Sbjct: 50  GEVVAIPTETVYGLAANALSACAVGRVYTAKNRPADNPLIVHVSSLDMLASLYPPGWALP 109

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
            +   + +  WPGPLT++L    +  +  + T    T   R+P       LI   G PLA
Sbjct: 110 SVYEAIVRDLWPGPLTILLPR--SHLVPDVVTCGQSTMAVRMPAHPVALALIAACGFPLA 167

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T  +H+L   +   +PLI+DGG    G+EST+++        ILRPGG
Sbjct: 168 APSANSSGRPSPTLARHVL-DDLGGRVPLILDGGACTYGVESTVLD-GLRNPPAILRPGG 225

Query: 197 LEIETLKRAISVE-----LEYCVDE--TSTPQSPGMLKSHYAPRSQVRL----------- 238
           +  E L     +E         VD    + P +PGM   HY+P + V L           
Sbjct: 226 ITHEQLAGYPGLEGLQLYRRDFVDPQLEAAPSTPGMKYRHYSPNAPVLLLDPGDAPAASV 285

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
              A+    ++ L       +           L    +    A  L+  ++  D+ G + 
Sbjct: 286 SDEALAARQQDKLEEARQGDLWPQRLPPYEYVLGHVSRPAAVASELYAALRHMDEVGVAV 345

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I    + + G G+A+ NRL +AA+
Sbjct: 346 IVVEGVRDTGAGVAVMNRLRKAAS 369


>gi|262277471|ref|ZP_06055264.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HIMB114]
 gi|262224574|gb|EEY75033.1| Sua5/YciO/YrdC family protein [alpha proteobacterium HIMB114]
          Length = 321

 Score =  278 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 115/319 (36%), Positives = 163/319 (51%), Gaps = 12/319 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I S TD N L+K  + L      A+PTETVYGLA ++ +  A+ ++Y +KKRP  NPLI 
Sbjct: 14  IFSPTDKN-LKKCSKILKNHGIAALPTETVYGLAGNAYSNRAVTKIYSLKKRPKKNPLIV 72

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           H   +  + K    +P    L + F PGP+T VL L   + I         T   RVP  
Sbjct: 73  HFDCLQSILKETEQNPYLQKLYRKFSPGPITYVLKLKKKSKISKKLINKNGTIACRVPAN 132

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              +K+I     PLA PSAN S  +S T+ K +      K+I  I+DG  SK+G+EST+V
Sbjct: 133 AHFRKIIRLAHTPLAAPSANISNHVSPTSSKDVF-DEFGKKIKFILDGKRSKVGIESTVV 191

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
           N+    + ++LRPG +    +++ I    +    E     SPG LK HY+P   V L   
Sbjct: 192 NLV--GRPKVLRPGKITKYEIQKVIKHVTKNISKE---ILSPGQLKKHYSPGIPVFLNQQ 246

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
              P  AL+ FG   +K          LSK+  L E A  L+  ++        +I  + 
Sbjct: 247 KPKPYGALLVFGKTKLKGKN----IFYLSKSKSLDECAKKLYLKLRQIKKLKYKTITVTK 302

Query: 302 IPNHGLGIAINNRLERAAA 320
           IPN G+GIAINNRL+RA++
Sbjct: 303 IPNQGIGIAINNRLKRASS 321


>gi|91790454|ref|YP_551406.1| translation factor SUA5 [Polaromonas sp. JS666]
 gi|91699679|gb|ABE46508.1| translation factor SUA5 [Polaromonas sp. JS666]
          Length = 331

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 148/334 (44%), Gaps = 21/334 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  TD  A+ +A   + AG  +  PTETVYGL  D+ +  A+  ++  K RPA +PLI 
Sbjct: 2   ILPGTDPQAIHEAARRIQAGGLVGFPTETVYGLGADASSDQAVAGIFSAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D   V  +A SV P +  L + FWPGPLT++L                     R P 
Sbjct: 62  HVADAQQVADYASSVPPFAARLMQAFWPGPLTVILPRREGVAAAAAGGQGS--IGLRCPA 119

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  +      +A PSANR G++S T  +H+       +  L++DGG  ++G+ES+I
Sbjct: 120 HPVALAFLRACATGVAGPSANRFGRVSPTTAQHVQQEF--GDSLLVLDGGPCEVGIESSI 177

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL-------EYCVDETSTPQSPGMLKSHYAPR 233
           V+    + V +LRPG L    L+ A    +                P++ G L++HYAP 
Sbjct: 178 VDCTRGRPV-LLRPGVLTRAQLEAACGEPVLDKDELAREAAGLGDAPRASGTLEAHYAPH 236

Query: 234 SQVRL-RAIHVNPREALIRFGNVPIKNIENAII------SLNLSKTGKLKEAAFNLFNYM 286
           ++VRL  A  +     L+      I     +I+       L           A  LF  +
Sbjct: 237 AKVRLMDAGAIQTALDLLGADAAHIAIYARSIVRIKSDQVLYRRMPDDAAATAQQLFAVL 296

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  D  G   I    +P       + +RL RAAA
Sbjct: 297 RDFDAQGVKLIWIEHLPATAAWDGVRDRLARAAA 330


>gi|264680710|ref|YP_003280620.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2]
 gi|262211226|gb|ACY35324.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2]
          Length = 332

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 102/334 (30%), Positives = 166/334 (49%), Gaps = 21/334 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T   +++ A   L  G  + +PTETVYGLA DS N  A+ +++  K RPA +PLI 
Sbjct: 2   ILDGTLEVSVQAAAAALQQGRLLGLPTETVYGLAADSDNDAAVAQIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + + ++A   P+ +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADATAITRYAKEVPVFAQQLIDAFWPGPLTLILPRLPHA--AKASTGGQDSVGLRCPS 119

Query: 122 GFTK----KLIETYGHPLA---IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
                   K  +    P+     PSAN+ G++S T  +H+ +     E  L++DGG  ++
Sbjct: 120 HPVAHAVLKACQQLDPPVWGVSAPSANKFGRVSPTTAEHVATEF--GEELLVLDGGACEV 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233
           G+ESTIV+      V +LRPG +  + + RA  +  L        TP++ G L +HYAP 
Sbjct: 178 GIESTIVDCTRGVPV-LLRPGAVTRDDIARACGLRPLSKEELTADTPRASGTLLAHYAPN 236

Query: 234 SQVRL-RAIHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYM 286
           ++VRL  A  +     ++      I     + +++  ++      + + ++ A  LF  +
Sbjct: 237 AKVRLMDAGQLQSALDILGKDGRNIAIYHRSPLNVTTAQLLLRRMSDEPRDVARELFGML 296

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  DD GA  I   + P+      + +RL+RAAA
Sbjct: 297 RNFDDWGAKLIWIETPPDTADWEGVRDRLQRAAA 330


>gi|71083313|ref|YP_266032.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062426|gb|AAZ21429.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 310

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 111/314 (35%), Positives = 166/314 (52%), Gaps = 9/314 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ + ++KA ++LD    I +PTETVYGLA ++   +A++++Y +KKRP  NPLI H  D
Sbjct: 3   SNQSNIKKAKKYLDKNYCIGVPTETVYGLAANAYKNSAVKKIYNLKKRPKNNPLIVHYHD 62

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           I  +KK   ++   + L K F PGP+T VL L   + I    T N K+   R P     K
Sbjct: 63  IDSLKKDCLINDNFIKLYKKFSPGPITYVLQLKKNSKISKYVTNNKKSLAVRFPKHTIFK 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L++   +PLA PSAN + ++S    K +       +I  I+DGG   IG+ESTIVN+  
Sbjct: 123 NLLKQLDYPLAAPSANITTKVSAVKAKDV-KEEFGNKIKYILDGGTCAIGIESTIVNLTA 181

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP 245
             K  ILR GGL+I  +++A+  ++    +      +PG  + HY+P   +R+       
Sbjct: 182 --KPTILRLGGLDISKIQKALGFKMNISTNPKKKI-APGQSRLHYSPGIPLRMNVTKPKN 238

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EA I       K          L+    L EAA NL++ ++   + G  SIA   IPN 
Sbjct: 239 NEAFILIKKKKTKLKS----YFYLTSKSNLDEAAKNLYSCLRKIKNKGYKSIAVEKIPNI 294

Query: 306 GLGIAINNRLERAA 319
           GLG  IN+RL RA+
Sbjct: 295 GLGKTINDRLRRAS 308


>gi|119953512|ref|YP_945721.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia turicatae 91E135]
 gi|119862283|gb|AAX18051.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia turicatae 91E135]
          Length = 336

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 162/334 (48%), Gaps = 19/334 (5%)

Query: 1   MQIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           M +M   I +   ++KA + + AG  +  PTETVYG+  ++ N  AIR ++ +K+RP  N
Sbjct: 1   MTLMKTEIIEQLEIKKAAKLIRAGELVVFPTETVYGIGANAYNDDAIRMIFLVKRRPITN 60

Query: 59  PLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI HV  I  +K+     P  +L L + F PGPLT +L       I    +  L +   
Sbjct: 61  PLIVHVESIEKIKELVEYIPKSALILMQKFTPGPLTFILKNAGK--ISNFISGGLDSIAV 118

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIG 175
           R+P      KLI+  G P+A PSAN S + S TN +  +   +   +  II     SKIG
Sbjct: 119 RIPSEPVALKLIKMSGVPIAAPSANLSRRPSATNFEMAIRE-LDGLVKGIIKKNEESKIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST++    +  + ILRPG +  E +++ +  +  +EY V +    +SPG L  HY PR
Sbjct: 178 IESTVIGFDSKGNISILRPGSITKEMIEKELKGKFRVEYSVGKEMLSKSPGNLLEHYKPR 237

Query: 234 SQVRLRAIHVNPRE--------ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
             V L     N R+         LI    +       +    N+     L+E A N++  
Sbjct: 238 IPVYLFKQKDNIRQYASRQDTKVLIMKATLNSYWFNKSWNMNNICVFNTLEEYAKNIYKV 297

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
              ++ +    I    + N  LG +INNRL++A+
Sbjct: 298 FVESEKT-YKQILAEFVDNSQLGYSINNRLKKAS 330


>gi|167579982|ref|ZP_02372856.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           TXDOH]
          Length = 341

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 24/335 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I     + +A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H+
Sbjct: 6   PIPTDEQIDEAAALLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHL 65

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +  S        +   +  L   FWPGPLTL+L   +   I    +    +   R P   
Sbjct: 66  APGSDPGYWVDSLPADAQKLIDAFWPGPLTLILKRAA--RIPDAVSGGQDSVGLRCPSHP 123

Query: 123 FTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
             + L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+
Sbjct: 124 VAQALLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGI 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQ 235
           ESTI+++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ 
Sbjct: 182 ESTILDLSRGFPA-LLRPGDVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTP 240

Query: 236 VRLRAIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNY 285
           + L A   + P  A  R    P+             +A     ++     +  A  L+  
Sbjct: 241 LALAAFERLEPLLAAARDAGEPVALVARVSRAGAWAHAQGVHFVAAPEDPRVYARELYGL 300

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 301 LRALDRAQVARILVEKLPDTVEWIAVNDRLGRAAA 335


>gi|159035694|ref|YP_001534947.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
 gi|157914529|gb|ABV95956.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
          Length = 317

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 114/319 (35%), Positives = 181/319 (56%), Gaps = 9/319 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++  + + +A   L AG  +A PTETVYGL  ++ +  A+ R++  K RP+ +PLI H++
Sbjct: 1   MSADSGVAEAAAVLRAGGLVAFPTETVYGLGANALDAQAVARIFAAKARPSFDPLITHLA 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           + + ++K   +V P    LA+ FWPGPLTL++D  +   I P+ T+ L+T   RVP    
Sbjct: 61  EAAELEKLVGTVSPAVAVLAERFWPGPLTLIVDRPAA--IPPIVTSGLETMAVRVPDHAA 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + LI   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+V
Sbjct: 119 ARGLIAAAGVPVAAPSANRFGQLSPTWAEHVV-AGLGAAVDVVLDGGPTRCGIESTIVDV 177

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           + E+ V +LR G L +E+L+ A+   +      +  P +PG L +HYAPR+ +RL     
Sbjct: 178 RGERPV-VLRLGALPVESLEEAVG-PVTVRPGSSGQPVAPGTLAAHYAPRTPLRLVTGAG 235

Query: 244 NPREALIRFGNVPIKNIENA--IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                  R G +  ++           LS  G L EAA  LF+ +   D +G   I    
Sbjct: 236 PMDGGGARRGFLGFRSRPAGEWAAVEVLSSDGDLTEAAARLFDALHRLDGAGVDEIVVEP 295

Query: 302 IPNHGLGIAINNRLERAAA 320
           +P  G+G A+N+RL RAAA
Sbjct: 296 VPEVGVGRAVNDRLRRAAA 314


>gi|207728037|ref|YP_002256431.1| translation factor, sua5 type protein [Ralstonia solanacearum
           MolK2]
 gi|206591281|emb|CAQ56893.1| translation factor, sua5 type protein [Ralstonia solanacearum
           MolK2]
          Length = 336

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 158/321 (49%), Gaps = 18/321 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAVRRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128
             A   P +++ L + FWPGPLTL+L       I         +   R P     + +  
Sbjct: 76  YWADDLPGIAVQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSHPVAQALLS 133

Query: 129 --ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
             +     +A PSAN+ GQ+S T  +H+       E   +++G  + +G+ESTIV++   
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GEAIFVLEGDGADVGIESTIVDLSRL 191

Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIH 242
            +     +LRPG +  E ++R   V L   + + + P++ G L++HYAPR+ +  L A  
Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVTL--SLPDAAAPRASGTLRAHYAPRTPLYLLAATD 249

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN---LFNYMKIADDSGASSIAF 299
           V  R A +  G   +       +     +       A     L+  ++  D  G  +I  
Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQRAAPATPAAYANTLYALLRELDRGGYHAIWV 309

Query: 300 SSIPNHGLGIAINNRLERAAA 320
            ++P+     A+N+RL RAAA
Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330


>gi|73662077|ref|YP_300858.1| translation factor [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494592|dbj|BAE17913.1| putative translation factor [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 347

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 142/325 (43%), Gaps = 19/325 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N L       + G  IAIPTETVYGL  D+RN  AI+ +Y  K RP+ NPLI H+  + 
Sbjct: 18  DNELNDIKVIFENGGLIAIPTETVYGLGADARNEAAIKHIYSAKGRPSDNPLIVHIYKVE 77

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            ++     +      L   FWPGP++ ++ L     +    +  L +   R+P     ++
Sbjct: 78  QIQAFTDKLSKEVEMLMNEFWPGPISFIVPLKKGY-LCESVSGGLDSIAVRMPSHPIGRQ 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +++    P+A PSAN SG+ S T  +H+    +   I  I++G  S+ GLEST+++    
Sbjct: 137 ILKYVDMPIAAPSANLSGRPSPTTFEHVYRD-LDGRIDGIVNGDQSEEGLESTVLDCT-R 194

Query: 187 KKVRILRPGGLEIETLKRAISVEL-EYCVDETSTPQSPGMLKSHYAPRSQVRLRA----- 240
              +I RPG +    ++  I   +      ++  P +PGM   HY+P + V++       
Sbjct: 195 FPFKIARPGSITKSMIEAVIPDSVTTIGTLDSEKPIAPGMKYKHYSPDTPVKILKSFNAL 254

Query: 241 --IHVNPREALIRFGNVPIKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADDSGASSI 297
                N  +            I  A   + L +    +K A  NL+  +   D      I
Sbjct: 255 PTSTSNWTQTAFIVPRSKQALIPEAAKFIPLCEDENDIKGANHNLYQILHQLDQD--DQI 312

Query: 298 ---AFSSIPNHGLGIAINNRLERAA 319
                     +    AI NR+ +AA
Sbjct: 313 QHAFIYGFDLNDNTTAIMNRMMKAA 337


>gi|83746071|ref|ZP_00943126.1| SUA5 protein [Ralstonia solanacearum UW551]
 gi|207742433|ref|YP_002258825.1| translation factor, sua5 type protein [Ralstonia solanacearum
           IPO1609]
 gi|83727254|gb|EAP74377.1| SUA5 protein [Ralstonia solanacearum UW551]
 gi|206593823|emb|CAQ60750.1| translation factor, sua5 type protein [Ralstonia solanacearum
           IPO1609]
          Length = 336

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 158/321 (49%), Gaps = 18/321 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128
             A   P +++ L + FWPGPLTL+L       I         +   R P     + +  
Sbjct: 76  YWADDLPGIAVQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSHPVAQALLS 133

Query: 129 --ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
             +     +A PSAN+ GQ+S T  +H+       E   +++G  + +G+ESTIV++   
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GEAIFVLEGDGADVGIESTIVDLSRL 191

Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            +     +LRPG +  E ++R   V L   + + + P++ G L++HYAPR+ + L A   
Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGVTL--SLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249

Query: 244 NP-REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN---LFNYMKIADDSGASSIAF 299
            P R A +  G   +       +     +       A     L+  ++  D  G  +I  
Sbjct: 250 VPARLAALPAGQRIVWVGAPVDLPPGCDQRAAPATPAAYANTLYALLRELDRGGYHAIWV 309

Query: 300 SSIPNHGLGIAINNRLERAAA 320
            ++P+     A+N+RL RAAA
Sbjct: 310 ETLPDTSAWAAVNDRLRRAAA 330


>gi|282892124|ref|ZP_06300599.1| hypothetical protein pah_c207o060 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498019|gb|EFB40363.1| hypothetical protein pah_c207o060 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 314

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/312 (34%), Positives = 159/312 (50%), Gaps = 12/312 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L KACE L  G  +A+PTETVYGLA   R+P AI  ++ +K RPA NPLI HVS    + 
Sbjct: 5   LEKACELLSQGEVVALPTETVYGLAASLRHPNAIENIFALKNRPANNPLIIHVSHYEQIY 64

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            +A S+ P  + LA+ FWPGPLTLVL +   T I     A+L TA FR+P     + +  
Sbjct: 65  PYAQSIPPYFVKLAQHFWPGPLTLVLPIQPAT-IPNTVRADLTTAAFRIPQHPLSQAVIK 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+ +PSAN SG+ S T    +         P ++DGG    GLESTI+    + +  
Sbjct: 124 QVGPVVMPSANLSGRPSATQASRV-EEDFGTAFP-VLDGGGCTCGLESTILYFI-DNQWE 180

Query: 191 ILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPREA 248
           I+R G L  E  +  +    +       + P  PG L  HYAP++++ L           
Sbjct: 181 IVRLGSLAPEQFQPILGYQPVIRQETNQAKPLCPGQLYRHYAPQAKLLLDNKASPESIGY 240

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGL 307
           ++ F +    N +      +L K+   ++ A NL++ ++  DD+    I   S  P  GL
Sbjct: 241 VLGFSDRQYPNCK----IFSLGKSDNPEQVAENLYDTLRSLDDAKIQCIWVDSDFPQKGL 296

Query: 308 GIAINNRLERAA 319
            + I+ RL+RA+
Sbjct: 297 WLTISERLKRAS 308


>gi|320107104|ref|YP_004182694.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
 gi|319925625|gb|ADV82700.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
          Length = 340

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/329 (28%), Positives = 148/329 (44%), Gaps = 24/329 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L +A   L  G  +A PTETVYGL  ++ +  A+ +++  K+RP  +PLI H+S + +
Sbjct: 14  EDLDRAATILREGGTVAFPTETVYGLGANALDAAAVEKIFAAKQRPHWDPLIVHLSSLEI 73

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
           +     S+   +  L + FWPGPLTL+L       +    TA  +    R+P       L
Sbjct: 74  LSAIVSSISARARLLMEAFWPGPLTLLLARNPALPLA--VTAGRELVGVRMPAHPMALDL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSAN  G +S T+  H+L   +   I  I+DGG + +G+EST+++     
Sbjct: 132 IRRAGVPVAAPSANLFGHVSPTSAAHVL-EDLDGAIDAIVDGGSTSVGVESTVLD-PNTS 189

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDET------STPQSPGMLKSHYAPRSQVRLRAI 241
            + + RPG + +E +       + Y   +T       +  SPG+   HYAPR++V L   
Sbjct: 190 PMMLYRPGAITLEQIVAVAGPTVRYQPVDTLDGAKHESLPSPGIGIRHYAPRARVVLVQD 249

Query: 242 HVNPREALIRFGNVPI--------KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
                    +     +        K    +I ++           A  LF  ++  D  G
Sbjct: 250 EDELHRIFQQMKTERVGVLLPTEWKIPSQSIEAVIWGSWNDTTALAHTLFEGLRTLDTRG 309

Query: 294 ASSIAFSSIPNHGLG---IAINNRLERAA 319
              I    +P  G G    AI +RL +AA
Sbjct: 310 VEIILC-PLPREGSGPLAEAIRDRLMKAA 337


>gi|83719082|ref|YP_441225.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
 gi|167618052|ref|ZP_02386683.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis Bt4]
 gi|257140109|ref|ZP_05588371.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
 gi|83652907|gb|ABC36970.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
          Length = 341

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 24/335 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I     + +A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H+
Sbjct: 6   PIPTDEQIDEAAALLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHL 65

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +  S        +   +  L   FWPGPLTL+L   +   I    +    +   R P   
Sbjct: 66  APGSDPGYWVDSLPADAQKLIDAFWPGPLTLILKRAA--RIPDAVSGGQDSVGLRCPSHP 123

Query: 123 FTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
             + L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+
Sbjct: 124 VAQALLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVRVLDGGPSDVGI 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQ 235
           ESTI+++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ 
Sbjct: 182 ESTILDLSRGFPA-LLRPGDVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTP 240

Query: 236 VRLRAIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNY 285
           + L A   + P  A  R    P+             +A     ++     +  A  L+  
Sbjct: 241 LALAAFERLEPLLAAARDAGKPVALVARVSRAGAWAHAQGVHFVAAPEDPRVYARELYGL 300

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 301 LRALDRAQVARILVEKLPDTVEWIAVNDRLGRAAA 335


>gi|258517250|ref|YP_003193472.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780955|gb|ACV64849.1| Sua5/YciO/YrdC/YwlC family protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 343

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/320 (31%), Positives = 140/320 (43%), Gaps = 30/320 (9%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP- 78
             G  +A PTETVYGL  ++ +  A+RRL++ K RPA NPL  HV+D+     +    P 
Sbjct: 29  KTGGLVAFPTETVYGLGANALDSRAVRRLFQAKARPADNPLTLHVADLKTAFAYLKDIPQ 88

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +  LA  FWPGPLTLVL       +    T        R+P       LIE  G PL  
Sbjct: 89  EAHALAGQFWPGPLTLVLPFQGH--LPAEVTGGRPALGVRMPDHPVALALIEQSGVPLVA 146

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSAN SG+ S T   H+L   +   I  ++DGG S+ GLEST+++   EK V +LRPG L
Sbjct: 147 PSANLSGRPSPTTADHVL-QDLSGRIEAVLDGGPSEWGLESTVIDFTGEKPV-LLRPGVL 204

Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257
             E L+          +   + P +     +HY P +   L     + R  L + G + +
Sbjct: 205 TQEDLRPFTG---SLELTNKAIPSA---KYAHYTPHAAFLLVEGEDD-RVVLEKIGQMAL 257

Query: 258 KNIENA-----------------IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
              +                    I        +    A  LF  M+  D+     I  +
Sbjct: 258 HYEKQGQKVGLLLYEEDAFLFQSYIYTTAGSKSRPVSVAAGLFQAMRELDNRCVDIIICA 317

Query: 301 SIPNHGLGIAINNRLERAAA 320
                GLG+AI NRL  AA 
Sbjct: 318 GFHGQGLGLAIQNRLRLAAG 337


>gi|254456156|ref|ZP_05069585.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083158|gb|EDZ60584.1| Sua5/YciO/YrdC family protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 310

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/322 (33%), Positives = 170/322 (52%), Gaps = 17/322 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ +     + ++KA ++LD    IA+PTETVYGLA ++ +  A+++++++KKRP+ NPL
Sbjct: 1   MKTI----QSNIKKAKKYLDNNDCIAVPTETVYGLAGNAYSNIAVKKIFKLKKRPSNNPL 56

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I H  +I+ +K   +++     L K F PGP+T VL L     I    T   K+   R P
Sbjct: 57  IVHYYNINKLKNDCNINENFKKLYKRFSPGPITYVLSLKKNCKISKFVTNKQKSLAVRFP 116

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                KKL++   +PLA PSAN S ++S      +       ++  I++GG   IG+EST
Sbjct: 117 KHPLFKKLLKNLDYPLAAPSANISTKLSSVQASDV-KEEFGSKVRYILNGGKCNIGVEST 175

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           I+N+    K  +LR GGLEI  +++ +  ++   ++      +PG    HY+P   +R+ 
Sbjct: 176 IINLT--NKPTLLRYGGLEISRIEKILKKKISININSKKKI-APGQFPLHYSPGVPLRVN 232

Query: 240 A--IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
                 N    LI+  N+  KN         LSK   L EAA NL++ ++     G   I
Sbjct: 233 VKKSKSNEAFVLIKKRNINSKNYY------YLSKKNNLNEAAKNLYSILRKIKKDGYKMI 286

Query: 298 AFSSIPNHGLGIAINNRLERAA 319
           A   IPN G+G  IN+RL RA+
Sbjct: 287 AVEKIPNIGIGKTINDRLNRAS 308


>gi|170693448|ref|ZP_02884607.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M]
 gi|170141603|gb|EDT09772.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M]
          Length = 359

 Score =  276 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 23/330 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   
Sbjct: 28  AAQIEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQG 87

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                   +   +  L   FWPGPLTL+L   +   I    +    +   R P     + 
Sbjct: 88  DPNYWVEHLPQEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 145

Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+E +         +A PSANR G +S T  +H+        I  ++DGG S +G+ESTI
Sbjct: 146 LLEAFSSLRAGHGGVAAPSANRFGHVSPTTAQHV-RDEFGSAI-HVLDGGASDVGIESTI 203

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           V++       +LRPG +  + +   +          + + P++ G LK+HYAPR+ + L 
Sbjct: 204 VDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 262

Query: 240 AIHVNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
             +        R     +          +  +A     ++        A  L+  ++  D
Sbjct: 263 PFNALEPLLAARAAGERVALVARASRAGHWADAEGVHFIAAPEDPHVYARELYGLLRALD 322

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +  + I    +P+    IA+N+RL RAAA
Sbjct: 323 RANVARILIEKLPDTIEWIAVNDRLGRAAA 352


>gi|72162360|ref|YP_290017.1| translation factor SUA5 [Thermobifida fusca YX]
 gi|5107073|gb|AAD39949.1|AF144563_3 unknown [Thermobifida fusca]
 gi|71916092|gb|AAZ55994.1| translation factor SUA5 [Thermobifida fusca YX]
          Length = 335

 Score =  276 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/329 (31%), Positives = 166/329 (50%), Gaps = 21/329 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +      AL +A   L AG  +A PTETVYGL  D+ NP A+ R++  K RPA +PLI H
Sbjct: 12  VRAVSPAALDEAVRVLRAGGLVAFPTETVYGLGADAANPAAVARIFAAKGRPADHPLIVH 71

Query: 64  VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           V+     +   A+  PL+  LA  FWPGPLTL+L    +  +    T    T   RVP  
Sbjct: 72  VASAESARDWAATFPPLARTLADAFWPGPLTLILPR--SAQVPDAVTGGRATVGLRVPDQ 129

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L+E +G  +A PSANR G++S T   H+ ++ +   + L++DGG   +G+ESTIV
Sbjct: 130 PVALALLERFGGGIAAPSANRFGRVSPTTAAHV-AADLGDRVDLVLDGGPCTVGVESTIV 188

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
            V  + ++ +LR GG+  + L       ++     T   ++PGML +HYAP ++V L   
Sbjct: 189 EV-ADGRLTVLRTGGITPDDLAAVTGAPVD--TTPTGPARAPGMLAAHYAPAARVVLAEA 245

Query: 239 --------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                   + +    R A++       +N+   ++   L      ++ A  L+  ++  D
Sbjct: 246 AEAADTVAQWVEKGHRVAVLAETATVPENLPEGVVV--LPSPASARDYARVLYQRLRDVD 303

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAA 319
            +GA  +        G+G+A+ +RL RA+
Sbjct: 304 AAGADVVVAIPPEPAGIGLAVRDRLLRAS 332


>gi|302864546|ref|YP_003833183.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302567405|gb|ADL43607.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 323

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 11/316 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L AG  +A PTETVYGL  ++ +  A  R++E K RP+ +PLI H++D +
Sbjct: 12  ERGIDEAAAVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKARPSFDPLISHLADAA 71

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
            +      V      LAK FWPGPLTL++D      I P+ T+ L T   RVP     + 
Sbjct: 72  DLAALVGEVPAAVAELAKRFWPGPLTLIVDRPEI--IPPIVTSGLDTMAVRVPDEPSARA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+ + E
Sbjct: 130 LIAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGE 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV--N 244
           + V +LR G L +E L  A+   +E     +  P +PG L +HYAPR+ +RL A      
Sbjct: 189 RPV-VLRLGALPVEALVEAVG-PVEVRQGSSGQPVAPGTLAAHYAPRTPLRLGAAAEPGG 246

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
            R   + F   P  +   A+    LS  G +  AA  LF+ +   D +G + I    +P 
Sbjct: 247 GRRGFLAFREPPADSDWAAVEV--LSPDGDVTAAAARLFDALHRLDAAGVTEIVAEPVPE 304

Query: 305 HGLGIAINNRLERAAA 320
            G+G AIN+RL RAAA
Sbjct: 305 TGVGRAINDRLRRAAA 320


>gi|103487254|ref|YP_616815.1| Sua5/YciO/YrdC/YwlC [Sphingopyxis alaskensis RB2256]
 gi|98977331|gb|ABF53482.1| translation factor SUA5 [Sphingopyxis alaskensis RB2256]
          Length = 315

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 120/300 (40%), Positives = 164/300 (54%), Gaps = 13/300 (4%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G P+A+PTETVYGLA D+R+   + R+Y  K RP  NPLI HV +++  +         
Sbjct: 27  GGQPVAVPTETVYGLAADARSADGVARIYAAKGRPDFNPLIVHVPNLAAAETLGQFGAAE 86

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             LA  FWPGPLTLV+  ++   +  ++TA L T   RVP     + L+   G PLA PS
Sbjct: 87  RALATRFWPGPLTLVVPRVAGCPVASIATAGLDTIALRVPGHRAMQALLAGTGAPLAAPS 146

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG++S T   H+L +S+   I L+ID G ++ G+ESTI  VQ +  + +LRPG +  
Sbjct: 147 ANASGRVSPTRADHVL-ASLDGRIALVIDDGPTRAGVESTIARVQ-DGAIEVLRPGPVTA 204

Query: 200 ETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
             L  A  + +     + S   +PGML SHYAP   VRL A+     E  I FG +    
Sbjct: 205 AMLAMASGLPV--IERKGSDIVAPGMLASHYAPGKPVRLGAVEFADDEFGIGFGGLAGD- 261

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                   +LS  G L EAA  LF+ +     S   +IA ++IP  GLG AIN+RL RAA
Sbjct: 262 -------YDLSAAGDLTEAAARLFDALHAGAASAKPNIAVAAIPVEGLGAAINDRLARAA 314


>gi|315500839|ref|YP_004079726.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5]
 gi|315407458|gb|ADU05575.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5]
          Length = 323

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 117/316 (37%), Positives = 172/316 (54%), Gaps = 11/316 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L AG  +A PTETVYGL  ++ +  A  R++E K RP+ +PLI H++D +
Sbjct: 12  ERGIDEAAAVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKARPSFDPLISHLADAA 71

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            +      V      LAK FWPGPLTL++D      I P+ T+ L T   RVP     + 
Sbjct: 72  DLAALVGEVPAAVAELAKRFWPGPLTLIVDRPEI--IPPIVTSGLDTMAVRVPDESSARA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+ + E
Sbjct: 130 LIAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGE 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV--N 244
           + V +LR G L +E L  A+   +E     +  P +PG L +HYAPR+ +RL A      
Sbjct: 189 RPV-VLRLGALPVEALVEAVG-PVEVRQGSSGQPVAPGTLAAHYAPRTPLRLGAAAEPGG 246

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
            R   + F   P      A+    LS  G +  AA  LF+ +   D +G + I    +P 
Sbjct: 247 GRRGFLAFREPPADGDWAAVEV--LSPDGDVTAAAARLFDALHRLDAAGVTEIVAEPVPE 304

Query: 305 HGLGIAINNRLERAAA 320
            G+G AIN+RL RAAA
Sbjct: 305 TGVGRAINDRLRRAAA 320


>gi|187918590|ref|YP_001884153.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia hermsii DAH]
 gi|119861438|gb|AAX17233.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia hermsii DAH]
          Length = 336

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/332 (31%), Positives = 160/332 (48%), Gaps = 18/332 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   I + + + KA +F+  G  +  PTETVYG+  ++ N  A+R ++ +KKRP  NPL
Sbjct: 4   MKT-EIIEQSEIEKAAKFIRTGELVVFPTETVYGIGANAYNDDAVRMIFLVKKRPITNPL 62

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  I  + +     P  +L L + F PGPLT +L       I  L +  L++   R+
Sbjct: 63  IVHVESIEKINELVEHIPKSALILMQKFTPGPLTFILKNAGK--ISNLISGGLESIAVRI 120

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177
           P      KLI+  G P+A PSAN S + S TN K  +   +   +  II     SKIG+E
Sbjct: 121 PSEPVALKLIKISGVPIAAPSANLSRRPSATNFKMAIKE-LDGLVKGIIKKNEESKIGIE 179

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST++    +  + ILRPG +  E ++R +  E  +EY V +    +SPG L  HY PR  
Sbjct: 180 STVIGFDLKGNISILRPGSITKEMIERELKGEFRVEYSVGKEMLSKSPGNLLEHYRPRIP 239

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISL--------NLSKTGKLKEAAFNLFNYMK 287
           V L     N R    R     +   +              N+     L+E A N++    
Sbjct: 240 VYLFKQKDNIRCYASRQDTKVLITRDTFKSYWFNGFWNMNNICVFNTLEEYAKNIYKVFV 299

Query: 288 IADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            ++      I    + N+ LG +INNRL++A+
Sbjct: 300 ESEKE-YKQILAEFVDNNQLGYSINNRLKKAS 330


>gi|187734781|ref|YP_001876893.1| Sua5/YciO/YrdC/YwlC family protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424833|gb|ACD04112.1| Sua5/YciO/YrdC/YwlC family protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 348

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 113/321 (35%), Positives = 160/321 (49%), Gaps = 25/321 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD----PLS 80
           + IPTETVYGL  D+ NP A+ R++E K RP+ +PLI HV   S V+K+ +V      L 
Sbjct: 31  VGIPTETVYGLGADALNPEAVARIFEAKGRPSFDPLIIHVHHGSEVEKYTAVPEGLKDLV 90

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPS 139
             LA  FWPGPLTLVL       I  + T+ L T   RV      + + +  G P+A PS
Sbjct: 91  HTLASRFWPGPLTLVLPKADI--IPDIVTSGLPTVAVRVSAHPAMRGVAKALGRPIAAPS 148

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV----NVQCEKKVRILRPG 195
           ANR G IS T+   +    +   I +I+D G    GLESTIV    + + +  + +LR G
Sbjct: 149 ANRFGHISPTSASAVQKE-LGGSIEMILDAGACSEGLESTIVRPVLDEKGKPSLELLREG 207

Query: 196 GLEIETLKRAISVELE----YCVDETSTPQSPGMLKSHYAPRSQV-RLRAIHVNPREALI 250
            +  E  +  + V         V E S   +PG L SHYAPR  +  L           +
Sbjct: 208 PVTREQFRNLVKVVRRKPSCRPVSEESPADAPGQLTSHYAPRKPMLLLEPGENFAPVEGV 267

Query: 251 RFGNVPIKNIE------NAIISLNLSK-TGKLKEAAFNLFNYMKIADDSGA-SSIAFSSI 302
           ++G +  +         +    + +S  +G+L EAA  LF  M+  D++ A   I   S+
Sbjct: 268 KYGLLSYEGTSALAREGDWAEVVAMSPGSGRLAEAAVRLFALMRQMDENEAIDVIVAESV 327

Query: 303 PNHGLGIAINNRLERAAAPRN 323
           P  GLG AI +RL RA+A R 
Sbjct: 328 PESGLGRAIMDRLRRASAVRE 348


>gi|307730877|ref|YP_003908101.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003]
 gi|307585412|gb|ADN58810.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003]
          Length = 357

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/336 (27%), Positives = 151/336 (44%), Gaps = 24/336 (7%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++ +T +  +  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I 
Sbjct: 20  VLPVT-AAQIEHAAALLDAGGLVAFPTETVYGLGGDAQNPDAVARIYAAKGRPANHPVIV 78

Query: 63  HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H++           +   +  L   FWPGPLTL+L   +   I    +    +   R P 
Sbjct: 79  HLAPQGDPGYWVEQLPQEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPS 136

Query: 122 G-FTKKLIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
               + L+E +         +A PSANR G +S T  +H+           ++DGG S +
Sbjct: 137 HPVAQALLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEF--GAAIHVLDGGASDV 194

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPR 233
           G+ESTI+++       +LRPG +  + +   +          + + P++ G LK+HYAPR
Sbjct: 195 GIESTILDLSRGFPA-LLRPGRVTPQEIADVLGEAPRLPDGSDATAPRASGTLKAHYAPR 253

Query: 234 SQV---------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
           + +          L A         +           +A     ++        A  L+ 
Sbjct: 254 TPLALLPFNALEPLLAGRAAGERVALVARASRAGQWADAEGVHFIAAPEDPHVYARELYG 313

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 314 LLRALDRANVARILIEKLPDTIEWIAVNDRLGRAAA 349


>gi|295677567|ref|YP_003606091.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002]
 gi|295437410|gb|ADG16580.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002]
          Length = 350

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 23/330 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   
Sbjct: 19  AAQIEHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPHG 78

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L   +   I    +    +   R P     + 
Sbjct: 79  DPNYWVEHLPADAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 136

Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+E +         +A PSANR G +S T  +H+        I  ++DGG S +G+ESTI
Sbjct: 137 LLEAFSALRGGHGGVAAPSANRFGHVSPTTAQHV-RDEFGSAI-HVLDGGASDVGIESTI 194

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236
           +++       +LRPG +  + +   +          + + P++ G LK+HYAPR+ +   
Sbjct: 195 LDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 253

Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                  L A+        +           +A     ++        A  L+  ++  D
Sbjct: 254 PFGELEPLLAVREPGERVALVARASRAGQWADADGVYFVAAPEDPHVYARELYGLLRALD 313

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +  + I    +P+    IA+N+RL RAAA
Sbjct: 314 RANVTRILIEKLPDTIEWIAVNDRLGRAAA 343


>gi|237748715|ref|ZP_04579195.1| translation factor SUA5 [Oxalobacter formigenes OXCC13]
 gi|229380077|gb|EEO30168.1| translation factor SUA5 [Oxalobacter formigenes OXCC13]
          Length = 342

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 92/331 (27%), Positives = 153/331 (46%), Gaps = 27/331 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ +R A   L++G  +A PTETVYGL  D+ N  A   ++ +K RPA +PLI HV+  +
Sbjct: 6   SDDVRAAARMLESGQLVAFPTETVYGLGADAENAVATAAIFALKNRPANHPLIVHVAPDA 65

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +   +S +   +  L   FWPGPLTL+L   +   I         +   R P     + 
Sbjct: 66  DIGYWSSYIPDEAKKLIDAFWPGPLTLILKKAAH--IPAAVAGGQDSIGLRCPSHPVAQA 123

Query: 127 LIETY---GHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLESTIVN 182
           L+  +      +A PSANR G +S T  +H+         +  I++GG S++G+ESTI++
Sbjct: 124 LLRAFKGGKGGIAGPSANRFGHVSPTRAEHVREEFGDDPRLAAILEGGQSEVGIESTILD 183

Query: 183 VQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +        V +LRPG +    +   I    E  + + + P++ G L SHYAP + V + 
Sbjct: 184 LSRIETAGPV-LLRPGKIHSLQIAEVIGRMPE--MPDAAAPRASGTLASHYAPLTPVVIV 240

Query: 240 AIHV-----------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
                          N R AL+ + ++     +  +    L  +  +   +  L+  ++ 
Sbjct: 241 PEKDLTSVLKQLEKKNIRVALLHYSSLSSDRKQPLVKQTGLFCSPDV--YSHQLYASLRE 298

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            D   A  I   + P+      +N+RL RAA
Sbjct: 299 LDRHRADVILVEATPDTEAWKGVNDRLRRAA 329


>gi|116620704|ref|YP_822860.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076]
 gi|116223866|gb|ABJ82575.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076]
          Length = 288

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/307 (29%), Positives = 141/307 (45%), Gaps = 25/307 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E +  G  +A PTETVYGL  ++ +  A+ R++E K RP  +PLI HV  + M +  +
Sbjct: 4   AAELIRGGKLVAFPTETVYGLGANALDADAVARIFEAKGRPRTSPLIVHVDSVEMAQTLS 63

Query: 75  SVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132
              P +   LA+++WPGPLTLV+       I  + TA L T   R+P      +LI   G
Sbjct: 64  DDWPDTAELLARIYWPGPLTLVV--AKHPGIPDIVTAGLPTVGLRMPAHPMALELIREAG 121

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+A PSANR  ++S T+  HI  S         +DGG S++G+EST++++     +  L
Sbjct: 122 VPIAAPSANRFTELSPTSAAHIPES----LADFTLDGGPSQVGIESTVLSLVAGPTL--L 175

Query: 193 RPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           RPG + ++ L+  I               +PGM   HY P + + L       +   +R 
Sbjct: 176 RPGVIPVDELESLIGPIARGVAHVQDAHPAPGMHTRHYRPSTPLYLGEFPAEGKGVFLRI 235

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
           G    +                 +  A  L+  +   D  G   IA    P+      + 
Sbjct: 236 GYEMPE---------------DPRAYAAALYETLHHLDTEGLDWIAVEVPPDTPEWAGVL 280

Query: 313 NRLERAA 319
           +RL RAA
Sbjct: 281 DRLRRAA 287


>gi|327401143|ref|YP_004341982.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6]
 gi|327316651|gb|AEA47267.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus veneficus SNP6]
          Length = 317

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 159/315 (50%), Gaps = 25/315 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  +A PTETVYGL  D+ N  A+RR++E K+RP  NPLI HVS +  V 
Sbjct: 16  IARAAEIIKKGGLVAFPTETVYGLGGDALNENAVRRIFEAKERPPRNPLIVHVSSVEQVY 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + A V+ ++  L   F+PGPL LVL       +  ++TA +K    R+P       LIE 
Sbjct: 76  RIAEVNEVAEKLMGEFFPGPLALVL--KKKDVVPDITTAGMKKVAVRMPDHKVALTLIEL 133

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+A PSAN SG+ S T  +H++   +   I  I+D G  KIG+EST+++V   K  +
Sbjct: 134 SETPIAAPSANISGRPSPTKAEHVI-EDLAGRIDAILDAGEVKIGIESTVLDVTS-KPAK 191

Query: 191 ILRPGGLEIETL-KRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP---- 245
           ILR G +  E L +R I VE+                  HY  ++++ +           
Sbjct: 192 ILRLGAITPEMLVERGIEVEVIDTRP-----------FRHYQTKAKLYVVNAENLAEFVG 240

Query: 246 --REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
             RE  ++ G   I    +A   + L K   +++ A NLF+ ++  D SG   I   ++ 
Sbjct: 241 SLREKGVKVGVARITAECDADRIVELGK--SIEDVAKNLFSALRELDRSGVDIIVVEAVE 298

Query: 304 NHGLGIAINNRLERA 318
             GLG  I ++LE A
Sbjct: 299 RKGLGKVIMSKLEEA 313


>gi|313673749|ref|YP_004051860.1| sua5/ycio/yrdc/ywlc family protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940505|gb|ADR19697.1| Sua5/YciO/YrdC/YwlC family protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 341

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/336 (33%), Positives = 166/336 (49%), Gaps = 31/336 (9%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+++T+ N   AL+ A E +  G    IPTETVYG+A    N  AI++++E K RP  N
Sbjct: 8   KIITLTEENFKEALKIASEIISNGGIAVIPTETVYGIAASIYNSDAIQKIFEAKNRPMDN 67

Query: 59  PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI H+SD   +      ++  S  L + FWPGPLTL+    +   +    T  L T   
Sbjct: 68  PLIVHISDPKQLNDLTDEINETSRKLIQQFWPGPLTLIF--KAKEGVDKKVTGGLNTIAV 125

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P   FT KLIE  G PLA PSAN SG+ S T +  I    +  ++ +I+D GI + GL
Sbjct: 126 RMPDNAFTLKLIEMTG-PLAAPSANISGKPSGTEISDIF-EELNGKVDVIVDEGIVRCGL 183

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP---- 232
           EST++N      V ILR G +  E +++ + V       E +   SPG    HYAP    
Sbjct: 184 ESTVINTLINPPV-ILRKGTISKEMIEKVVGVVTFSSPGEGT--ISPGTKYKHYAPGVKT 240

Query: 233 ----------RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
                        + +  I  + +  +I FG + I+     I   NLS  G  + A+   
Sbjct: 241 TYIKKISSPDHFNLLMGTISKDKKIGIIHFG-LDIEGSYKNIKIENLS--GNPEYASKFF 297

Query: 283 FNYMKIADDSGASSIAFSSIPN-HGLGIAINNRLER 317
           +  ++  + S    I    +P  HGL I++ +R+ER
Sbjct: 298 YRTLRKMEKS-VDEIIILPLPEHHGLWISLEDRIER 332


>gi|76808623|ref|YP_332415.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710b]
 gi|126440362|ref|YP_001057891.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668]
 gi|226199432|ref|ZP_03794990.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254187567|ref|ZP_04894079.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254261671|ref|ZP_04952725.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710a]
 gi|76578076|gb|ABA47551.1| Sua5/YciO/YrdC/YwlC family protein, putative [Burkholderia
           pseudomallei 1710b]
 gi|126219855|gb|ABN83361.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668]
 gi|157935247|gb|EDO90917.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|225928508|gb|EEH24537.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254220360|gb|EET09744.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710a]
          Length = 342

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 24/328 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 11  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 71  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 128

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 186

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 187 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 245

Query: 240 AIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
           A   + P  A  R    P+             +A     ++        A  L+  ++  
Sbjct: 246 AFERLEPLLAAARDTGEPVALVARASRAGAWAHAAGVHFVAAPEDPAAYARELYGLLRAL 305

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLER 317
           D +  + I    +P+     A+N+RL R
Sbjct: 306 DRAQVARILVEKLPDTAEWTAVNDRLGR 333


>gi|330818174|ref|YP_004361879.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3]
 gi|327370567|gb|AEA61923.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3]
          Length = 351

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 152/335 (45%), Gaps = 24/335 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +    A+ +A   L AG  +A PTETVYGL  D+ +P A+ R+Y  K RP+ +P+I H+
Sbjct: 12  PMPPDAAIEEAATKLAAGQLVAFPTETVYGLGADAESPEAVARIYAAKGRPSNHPVIVHL 71

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
                       +   +  L   FWPGPLTL+L   +   I    +    +   R P   
Sbjct: 72  PPGGDPGYWVESLPADAQKLIDAFWPGPLTLILKRAAH--IPDAVSGGQDSVALRCPSHP 129

Query: 123 FTKKLIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
             ++L+  +         +A PSANR G +S T  +H+        +  ++DGG +++G+
Sbjct: 130 VAQRLLAAFSALRGGHGGVAGPSANRFGHVSPTTAQHV-REEFGDSV-HVLDGGAAEVGI 187

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQ 235
           ESTI+++       +LRPG +  + +   +          + + P++ G LK+HYAPR+ 
Sbjct: 188 ESTILDLSRGFPA-LLRPGHVTPQQIAAVLGTVPRLPDGSDATAPRASGTLKAHYAPRTP 246

Query: 236 ----------VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
                     + L A         +       ++   AI    ++     +  A  L++ 
Sbjct: 247 LALLPFDRLELLLDAAAEAGEPVALVARASSARDWSTAIGVHFVAAPEDPQAYARELYSL 306

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  D +  + I    +P+    +A+N+RL RAAA
Sbjct: 307 LRALDRAQVTRILIEQLPDTAEWVAVNDRLGRAAA 341


>gi|94309452|ref|YP_582662.1| translation factor SUA5 [Cupriavidus metallidurans CH34]
 gi|93353304|gb|ABF07393.1| putative translation factor (SUA5) [Cupriavidus metallidurans CH34]
          Length = 330

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/329 (26%), Positives = 144/329 (43%), Gaps = 20/329 (6%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +  +  L +A   L+AG  +A PTETVYGL  D+ NP A+ R++  K RP+ +P+I HV
Sbjct: 4   RMPTAAELDEAVRLLEAGELVAFPTETVYGLGADAENPEAVARIFAAKGRPSNHPVIVHV 63

Query: 65  SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            D + V   +   P +   L   FWPGPLT++L   +   I         +   R P   
Sbjct: 64  VDGADVGYWSDDVPEAAQKLIDAFWPGPLTIILKRAAH--IPAAVAGGQDSIGLRCPSHP 121

Query: 124 TKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +          +A PSAN+ GQ+S T  +H+        +  +++G    +G+ES+
Sbjct: 122 VAQALLSRFRRGRGGIAAPSANKFGQVSPTTAEHV-RDEFGGSV-YVLEGDGVDVGIESS 179

Query: 180 IVNVQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           IV++        V +LRPG +    +   +         + + P++ G LK+HYAPR+ +
Sbjct: 180 IVDLSRLDTAGPV-LLRPGAITAAMMADVLGT--MPLPPDAAAPRASGTLKAHYAPRTTL 236

Query: 237 RLRAIHVNPR--EALIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADD 291
            L      P+    L   G +       A      +           A  L+  ++  D 
Sbjct: 237 TLAQADALPQYLHGLSADGRLAWVGRAPATSDPRCTFVEAPATPDAYAQELYRLLRRLDK 296

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G   + F  +P       + +RL RAAA
Sbjct: 297 EGFQRLVFEPLPESLEWDGVRDRLGRAAA 325


>gi|78189525|ref|YP_379863.1| Sua5/YciO/YrdC/YwlC [Chlorobium chlorochromatii CaD3]
 gi|78171724|gb|ABB28820.1| translation factor SUA5 [Chlorobium chlorochromatii CaD3]
          Length = 324

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 12/323 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  + +TDS A  +A   L+ G  +A PTETVYGL     +  A+++++  K RP+ NPL
Sbjct: 9   MHTL-LTDSPA--EAAALLNGGKIVAFPTETVYGLGATINHSEALKQIFVAKGRPSDNPL 65

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    + K A+  P  +    + F+PGPLTLVL       +  L TA L++   R 
Sbjct: 66  ILHIAHPDNIGKVAATVPRYAERFIEKFFPGPLTLVLPKQP--QVPELVTAGLQSVGVRC 123

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + L+     P+A PSANRSG+ S T+ + +    +   I  ++      IGLES
Sbjct: 124 PAHPMAQALLALVNSPVAAPSANRSGKPSATSWETVY-DDLNGRIDGLLRSAPCTIGLES 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI-SVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           TIV+      + +LR G + +E L+  + S+ +         P+SPG+   HYAP + + 
Sbjct: 183 TIVDCTANTPL-LLRAGAITLEQLQAVVPSLRVNQPTHNNEPPKSPGLKYPHYAPHATIE 241

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           L A+   P         + I    N    +   +   ++     LF + +  D     +I
Sbjct: 242 LLAVGAVPLTLPPNSAYIGIAPPPNGATLV--MQCASIEAYGNALFQFFRTCDAHAIRTI 299

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
                 + GLG AI +RL RAA 
Sbjct: 300 YCELPTSDGLGRAIGDRLLRAAG 322


>gi|328773398|gb|EGF83435.1| hypothetical protein BATDEDRAFT_4477 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 324

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/324 (32%), Positives = 166/324 (51%), Gaps = 34/324 (10%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK-----KHASVDP 78
            +A PTETVYGLA ++ +  A++ ++  K+RP+ NPLI HVS I M++         +  
Sbjct: 1   VVAFPTETVYGLAANALDAAAVQGIFSAKQRPSDNPLIVHVSSIQMLESLLPPSLPHLPS 60

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAI 137
           + + L   FWPGPLT++L       I  L TA+  T   R+P       LI   G PLA 
Sbjct: 61  IYVALINKFWPGPLTILLPKGPH--IPNLVTASHDTVAVRMPSHPVALGLIAQCGFPLAA 118

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSAN SG+ S T  +H+  + +   IP+I+DGG+ + GLEST+V+        ILRPGG+
Sbjct: 119 PSANTSGRPSPTLAEHVF-ADLHSRIPMIVDGGMCRSGLESTVVDAL-RNPPAILRPGGI 176

Query: 198 EIETLK-----RAISVELEYCVDET--STPQSPGMLKSHYAPRSQVRLRAIHVNP----- 245
             E ++       +++   + VD+     P +PGM   HY P ++V L  I  N      
Sbjct: 177 TFEQIRLIAGFENVTIYNTHFVDKGLEEAPTTPGMKYRHYTPNAEVVLIEIGANAIKLDE 236

Query: 246 ---------REALIRFGNVPIK-NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
                    R  ++R G+   K ++    + ++L  T   +E A NLF  ++  +    +
Sbjct: 237 TNCVDPECTRVGVLRAGSTIDKYDVCKEAVEIHLGATA--EEIARNLFKGLRDLEQHYCA 294

Query: 296 SIAFSSIPNHGLGIAINNRLERAA 319
            I    IP+ G G+A+ NR+ +A+
Sbjct: 295 CIIVEGIPDVGHGLAVMNRIRKAS 318


>gi|323527240|ref|YP_004229393.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001]
 gi|323384242|gb|ADX56333.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001]
          Length = 360

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/330 (27%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   
Sbjct: 28  AEQIAHAAALLDAGGLVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQG 87

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                   +   +  L   FWPGPLTL+L   +   I    +    +   R P     + 
Sbjct: 88  DPNYWVEHLPQEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 145

Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+E +         +A PSANR G +S T  +H+        I  ++DGG S +G+ESTI
Sbjct: 146 LLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHV-RDEFGSAI-HVLDGGASDVGIESTI 203

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236
           +++       +LRPG +  + +   +          + + P++ G LK+HYAPR+ +   
Sbjct: 204 LDLSRGFPA-LLRPGRVTPQEIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 262

Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                  L A         +           +A     ++        A  L+  ++  D
Sbjct: 263 PFPALEPLLAARAAGERVALVARASRAGQWADAEGVHFIAAPEDPHVYARELYGLLRALD 322

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +  + I    +P+    IA+N+RL RAAA
Sbjct: 323 RANVARILIEKLPDTIEWIAVNDRLGRAAA 352


>gi|53718441|ref|YP_107427.1| hypothetical protein BPSL0802 [Burkholderia pseudomallei K96243]
 gi|53725053|ref|YP_102128.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344]
 gi|67641175|ref|ZP_00439959.1| Sua5/YciO/YrdC family protein [Burkholderia mallei GB8 horse 4]
 gi|121601543|ref|YP_991945.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1]
 gi|124384353|ref|YP_001028391.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229]
 gi|126449438|ref|YP_001079624.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247]
 gi|126453889|ref|YP_001065126.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106a]
 gi|167002687|ref|ZP_02268477.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20]
 gi|217419510|ref|ZP_03451016.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576]
 gi|237811040|ref|YP_002895491.1| Sua5/YciO/YrdC family protein [Burkholderia pseudomallei MSHR346]
 gi|242314543|ref|ZP_04813559.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106b]
 gi|254176690|ref|ZP_04883347.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399]
 gi|254181609|ref|ZP_04888206.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655]
 gi|254196617|ref|ZP_04903041.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13]
 gi|254203808|ref|ZP_04910168.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH]
 gi|254208786|ref|ZP_04915134.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU]
 gi|254360161|ref|ZP_04976431.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280]
 gi|52208855|emb|CAH34794.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52428476|gb|AAU49069.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344]
 gi|121230353|gb|ABM52871.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1]
 gi|124292373|gb|ABN01642.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229]
 gi|126227531|gb|ABN91071.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106a]
 gi|126242308|gb|ABO05401.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247]
 gi|147745320|gb|EDK52400.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH]
 gi|147750662|gb|EDK57731.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU]
 gi|148029401|gb|EDK87306.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280]
 gi|160697731|gb|EDP87701.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399]
 gi|169653360|gb|EDS86053.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13]
 gi|184212147|gb|EDU09190.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655]
 gi|217396814|gb|EEC36830.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576]
 gi|237504349|gb|ACQ96667.1| Sua5/YciO/YrdC family protein [Burkholderia pseudomallei MSHR346]
 gi|238522048|gb|EEP85495.1| Sua5/YciO/YrdC family protein [Burkholderia mallei GB8 horse 4]
 gi|242137782|gb|EES24184.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106b]
 gi|243061678|gb|EES43864.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20]
          Length = 341

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 24/328 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244

Query: 240 AIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
           A   + P  A  R    P+             +A     ++        A  L+  ++  
Sbjct: 245 AFERLEPLLAAARDTGEPVALVARASRAGAWAHAAGVHFVAAPEDPAAYARELYGLLRAL 304

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLER 317
           D +  + I    +P+     A+N+RL R
Sbjct: 305 DRAQVARILVEKLPDTAEWTAVNDRLGR 332


>gi|300706558|ref|XP_002995535.1| hypothetical protein NCER_101537 [Nosema ceranae BRL01]
 gi|239604680|gb|EEQ81864.1| hypothetical protein NCER_101537 [Nosema ceranae BRL01]
          Length = 327

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/330 (30%), Positives = 166/330 (50%), Gaps = 19/330 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+++S  + + + +  ++ +    + IPTETVYGLA    N  A++ ++ +KKRP  NPL
Sbjct: 1   MKVISTKNLD-INEVIKYFEQ-DVVVIPTETVYGLAASINNEQALKNIFRLKKRPIDNPL 58

Query: 61  ICHVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           I HVS + M++      V      + ++FWPGP++L+    +  ++    TA L T   R
Sbjct: 59  IVHVSSLDMLRTIIEGEVPENYQKIIEIFWPGPISLLF--RANKNLSKNVTAGLNTVLVR 116

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P       +IE    PLA PSAN SG+ S T V+H +        PL +DGG  K+GLE
Sbjct: 117 MPDNKVVLDIIEKLNVPLAAPSANVSGKPSPTCVQHAI-DDFGDNCPLYLDGGECKVGLE 175

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEY---CVDETSTPQSPGMLKSHYAPRS 234
           ST+ +   E  +  LRPGG++I  L+  I  ++          +T   PG    HY+P +
Sbjct: 176 STVFSYINEPII--LRPGGVKICELENIICKKINVNYLSFTGKNTTICPGQKYKHYSPIN 233

Query: 235 QVRLRAIHVNPREALIR----FGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIA 289
           +  +        + LI+     G +   N +  I ++ + + G   KE A N F  ++  
Sbjct: 234 KFIVITTDTINLKELIKNYKNVGILSHFNFKPQIENVTIFELGNNYKEVATNFFKGLRKL 293

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           D +    I   S+P    G+AI +R+++AA
Sbjct: 294 DTT-CDIIITKSLPLEYEGMAIMDRMKKAA 322


>gi|149927700|ref|ZP_01915952.1| Sua5/YciO/YrdC/YwlC [Limnobacter sp. MED105]
 gi|149823526|gb|EDM82756.1| Sua5/YciO/YrdC/YwlC [Limnobacter sp. MED105]
          Length = 333

 Score =  273 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/335 (28%), Positives = 169/335 (50%), Gaps = 21/335 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++++ +D+N +++  + L  G  +A PTETV+GL        AI+ +++ K RP  +PLI
Sbjct: 4   ELLAASDAN-IQRCAQALQNGQLVAFPTETVFGLGAAVSRLDAIQGIFKAKGRPTEHPLI 62

Query: 62  CHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            HV+  + +    A + P    L   FWPGPLTLV+       +    T    +   R P
Sbjct: 63  AHVAPGANLVGWVAELTPTMQKLMNAFWPGPLTLVVP--KGERMPFEVTGGQNSVGIRCP 120

Query: 121 CGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 KL++  G P+A PSANR G++S T   H+L+  +   IP I+DG + ++G+EST
Sbjct: 121 SHPVAIKLLKATGVPVAAPSANRFGKVSPTRASHVLAE-LGDRIPFILDGDVPEVGIEST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST----PQSPGMLKSHYAPRSQ 235
           IV++  E+   ILRPG +    ++  + V ++  V+ + T    P+  G L+ HY+P ++
Sbjct: 180 IVSLLEEQPA-ILRPGAITAAQIEAVLGVPVKSHVEVSKTPHANPRVSGALEKHYSPDAK 238

Query: 236 VR------LRAIHVNPREALIRFGNVPIKNI----ENAIISLNLSKTGKLKEAAFNLFNY 285
           V       L A+ +  +   + + +  +       E     L  + + K  E A  L+  
Sbjct: 239 VWVLQASELAALQLQNKTLCVGWTDEFLAQADALREKFGEVLVEALSDKPAEVAKALYAT 298

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++ AD+     + F     +    A+N+RL+RA+A
Sbjct: 299 LRQADELACKQLLFERPGQNQEWEAVNDRLKRASA 333


>gi|299067859|emb|CBJ39070.1| conserved protein of unknown function, translation factor domain,
           SUA5 type [Ralstonia solanacearum CMR15]
          Length = 336

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 158/331 (47%), Gaps = 26/331 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  +  L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV 
Sbjct: 10  MPPAARLDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVV 69

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           D + +   A   P ++L L + FWPGPLTL+L       I         +   R P    
Sbjct: 70  DGADLTYWADDVPGIALQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSVGLRCPSHPV 127

Query: 125 KKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            + +    +     +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTI
Sbjct: 128 AQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIESTI 185

Query: 181 VNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           V++    +     +LRPG +  E + R   V     + + + P++ G L++HYAPR+ + 
Sbjct: 186 VDLSRLDQGVGPVLLRPGAITPEDIGRVTGV--MPSLPDAAAPRASGTLRAHYAPRTPLY 243

Query: 238 LRAIHVNPREALIRFGNVPI-KNIENAIISLNLSKTGK-------LKEAAFNLFNYMKIA 289
           L A    P     R   +P  + I      ++L                A  L+  ++  
Sbjct: 244 LLAAADVP----ARLAALPAGQRIVWVGAPVDLPPGCDQHAAPATPAAYANTLYALLREL 299

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D  G  +I   ++P+     A+N+RL RAAA
Sbjct: 300 DRGGYHAIWLETLPDTSAWAAVNDRLRRAAA 330


>gi|319942512|ref|ZP_08016822.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319803915|gb|EFW00833.1| Sua5/YciO/YrdC/YwlC family protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 348

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/341 (28%), Positives = 151/341 (44%), Gaps = 32/341 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   D  A+ +A   L+AG  +A+PTETVYGLA D+    A+   Y  K RP  +PLI H
Sbjct: 12  VKPVDMAAIARAATILEAGGLVAMPTETVYGLAADADQEAAVTATYRAKGRPLNHPLIVH 71

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V+    +   A + P +  LA  +WPGPLT+VL            T    T   R P   
Sbjct: 72  VASADDIPWWAEITPEAQKLADRYWPGPLTMVLKKKPRCG--GWVTGGQDTVALRCPSHP 129

Query: 124 -TKKLIETYGHP----LAIPSANRSGQISITNVKHILSSSIC----KEIPLIIDGGISKI 174
               L+  YG P    L  PSAN  G+IS +  +H+    +      ++ LI+DGG  + 
Sbjct: 130 WAHALLAAYGGPKHRGLTAPSANSFGRISPSTAQHV-REDLGEKPAGKLDLILDGGPCEF 188

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
           G+EST++N+       ILR G +    L+  +   +         P++ G LKSHYAP++
Sbjct: 189 GIESTMINLSGSHP-EILRHGVITRAMLEEVLDCPVPDA--GADAPRASGRLKSHYAPKT 245

Query: 235 QVRLRAIHVNPREA---------LIRFGNVPIKNI--ENAIISLNLSKTGKLKEAAFNLF 283
           +  L      P  A         L   G   ++ +   NA ++  +     +     +L+
Sbjct: 246 RAELLPAAQLPERATELASEGIVLAVMGPQMLRALLPANAELAAFVEAPDDVLSYGASLY 305

Query: 284 NYMKIADD--SGAS----SIAFSSIPNHGLGIAINNRLERA 318
             +   D    G       I  ++  +     A+N+RL+RA
Sbjct: 306 EALHELDHAFEGNDCTRGRILIAAPADTPEWAAVNDRLKRA 346


>gi|85014437|ref|XP_955714.1| translation factor [Encephalitozoon cuniculi GB-M1]
 gi|19171408|emb|CAD27133.1| similarity to PROTEIN REQUIRED FOR NORMAL GROWTH
           (SUA5/YRDC/YC10/YWLC FAMILY) [Encephalitozoon cuniculi
           GB-M1]
          Length = 337

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/341 (32%), Positives = 166/341 (48%), Gaps = 32/341 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I+S  + +A      F D    +A+PTETVYGLA    NP A+ RL ++K+RPA NPL
Sbjct: 1   MKIVSTKELDA-DFVVRFFDD--VVAVPTETVYGLAASIYNPRAVERLLKLKRRPADNPL 57

Query: 61  ICHVSDISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
              VS   M+K+     +      L  +FWPGPLTL+    S   +  +  + L++   R
Sbjct: 58  PVAVSSYRMLKEIVKEPIPEEYRRLMDMFWPGPLTLLF--RSKDCVSSVIRSGLESVAVR 115

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      ++IE  G P+ +PSAN SG+ S T   H++      E+ LIIDGG   IGLE
Sbjct: 116 MPKSKHLLEIIERLGAPVVLPSANISGRPSPTTAGHVV-EDFGDEVKLIIDGGPCPIGLE 174

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST+V+   +  ++ILRPGG+ +E ++   + +  +    ++  T  SPG    HY+PRS 
Sbjct: 175 STVVS-YADGGLQILRPGGITVEDIESVANCKVFVRNRANDEETELSPGQKYKHYSPRSP 233

Query: 236 VRLRAIHVNPREALI-----------RFGNVPIKNIENAII------SLNLSKTGKLKEA 278
           + L        ++ I           R G      I+  +         N+      +E 
Sbjct: 234 LILFKGQPEEVKSGILEYIRANPDVSRIGVALHSGIDLGVPVDGRISVFNMGS--DRREV 291

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             NLF  ++  D    S I  + +     G AI NRLE+AA
Sbjct: 292 CRNLFEGLRSLDKIS-SVILAAGVDYGEEGDAIMNRLEKAA 331


>gi|134279501|ref|ZP_01766213.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305]
 gi|134248701|gb|EBA48783.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305]
          Length = 341

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 24/328 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTGQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244

Query: 240 AIH-VNPREALIRFGNVPIK---------NIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
           A   + P  A  R    P+             +A     ++        A  L+  ++  
Sbjct: 245 AFERLEPLLAAARDTGEPVALVARASRAGAWAHAAGVHFVAAPEDPAAYARELYGLLRAL 304

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLER 317
           D +  + I    +P+     A+N+RL R
Sbjct: 305 DRAQVARILVEKLPDTAEWTAVNDRLGR 332


>gi|329908773|ref|ZP_08274951.1| Sua5 YciO YrdC YwlC family protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546606|gb|EGF31576.1| Sua5 YciO YrdC YwlC family protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 333

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/326 (28%), Positives = 151/326 (46%), Gaps = 14/326 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS+   + + +A   L+ G  +A PTETVYGL  D+ NP AI R+Y  K RP+ +P+I H
Sbjct: 1   MSLPHDDDILRAAGLLEQGRLVAFPTETVYGLGADAENPAAIARIYAAKGRPSNHPVIVH 60

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           ++  +      S +   +  L   FWPGPLTL+L   +   I         +   R P  
Sbjct: 61  LAPEADPGYWVSAIPNEAQALIDAFWPGPLTLILPRAAH--IPAAVAGGQNSIGVRCPSH 118

Query: 123 -FTKKLIETY---GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
              + L+  +      +A PSAN+ G +S T  +H+        + LI+DGG S++G+ES
Sbjct: 119 PVAQALLRAFKGGKGGIAAPSANKFGHVSPTIAQHVRDEFTDGSVDLILDGGQSEVGIES 178

Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           +I+++         +LRPG +    L + + V               G L++HYAPR+ V
Sbjct: 179 SIIDLSRLDSHGPVLLRPGRITALQLAQVLGVAPAAPDAAAPRA--SGTLEAHYAPRTPV 236

Query: 237 RLRAIHVNP---REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
            + A    P   ++       V + +  ++  +  L         A  L+  +++ D + 
Sbjct: 237 AMIASADLPQILQQLAAAGRRVALLHWSDSQHAGALQLPSSPAGYAHGLYAGLRLLDMAD 296

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
           A  I   + P      AIN+RL RAA
Sbjct: 297 ADLILIEAPPGSADWQAINDRLRRAA 322


>gi|306820802|ref|ZP_07454427.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551192|gb|EFM39158.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 341

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 174/344 (50%), Gaps = 31/344 (9%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +++ + D N   A+  A E +  G  +  PTETVYG+  ++ +  + +++Y  K RP+ N
Sbjct: 4   EVIKLNDENYDYAINLASEHIRRGNIVIFPTETVYGIGANALDEESSKKIYMAKGRPSDN 63

Query: 59  PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           PLI H+ ++  + K +  +D  +  +   FWPGPLT++++   +  +    T  L T   
Sbjct: 64  PLIVHIENMDDLNKISKKIDERTKKIIDCFWPGPLTIIVE--KSEIVPSCITGGLNTVAV 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + +I+  G P+A PSAN SG+ SIT+ K +      K + LI+    ++IG+
Sbjct: 122 RMPSNKIARDIIKKSGIPIAAPSANISGRPSITSEKFVTDEFFGK-VDLILLNESTEIGI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV---DETSTPQSPGMLKSHYAPR 233
           EST+++V  E  + ILRPG +    L+  ++ ++ + +   DET  P+SPGM   HYAP+
Sbjct: 181 ESTVIDVTGEN-IVILRPGFITKNDLENLLAEKIIFDLNISDETKAPKSPGMKYRHYAPK 239

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK-------LK------EAAF 280
            ++ L +  +N    +    +    +++N + S+ L            L+      + A 
Sbjct: 240 CELYLMSGSIN--MQIDTAKSQIENDVKNGVKSIVLGLDNNRVYFENYLELGNSDIDVAK 297

Query: 281 NLFNYMKIADDSGASSIAF--SSIPNHGLGIAINNRLERAAAPR 322
           N+F  +++ D        F         L  +I +R+++AA  +
Sbjct: 298 NIFTNLRMLDIMKIQKAYFLYEV--KSDLDFSILDRVKKAAGYK 339


>gi|221211360|ref|ZP_03584339.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD1]
 gi|221168721|gb|EEE01189.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD1]
          Length = 342

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 144/331 (43%), Gaps = 24/331 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A   LDAG  +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H+    
Sbjct: 11  PAQIDSAAALLDAGQLVAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGG 70

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
                 A +   +  L   FWPGPLTL+L       I    +    +   R P     + 
Sbjct: 71  DPAYWAAELPADAQKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQA 128

Query: 128 IETY-------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           +             +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI
Sbjct: 129 LLAAFSARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTI 186

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236
           +++       +LRPG +  + +   +          + + P++ G LK+HYAPR+ +   
Sbjct: 187 LDLSRGFPA-LLRPGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 245

Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                   L A   +     +            A     ++     +  A +L+  ++  
Sbjct: 246 PFDALEPLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRAL 305

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D +  + I    +P     IA+N+RL RAAA
Sbjct: 306 DRAQVARILVEKLPETVEWIAVNDRLGRAAA 336


>gi|145589991|ref|YP_001156588.1| Sua5/YciO/YrdC/YwlC family protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048397|gb|ABP35024.1| translation factor SUA5 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 362

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 146/342 (42%), Gaps = 40/342 (11%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS----- 65
            + +A + L  G  +A PTETVYGL  D++NP AI++++  K RP+ +PLI H++     
Sbjct: 13  VINEAVQSLRDGGLVAFPTETVYGLGADAKNPEAIKKIFSTKGRPSNHPLIVHLAAPDRF 72

Query: 66  DISM------VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           D +       +      +   +L L   FWPGPLTLV     +  +    T    T   R
Sbjct: 73  DQAQVDWVPVLAPWVRDLSEDALKLINAFWPGPLTLVFKKDKS--VLNELTGGQDTVAIR 130

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
            P     ++L+  +   +  PSANR G++S T+   +          +++DGG  ++G+E
Sbjct: 131 APAHPIAQELLRKFKGGVVAPSANRFGKVSPTSAADVRHEFEGVLDLMVLDGGDCEVGIE 190

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPR 233
           STI+++    +  +LRPG +    +     + +    E   +    P+  G LK+HYAP 
Sbjct: 191 STIIDLSSGDRAILLRPGVITPSVILAKTGIRVYQPGEVFSETELLPKVSGSLKAHYAPT 250

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISL----NLSKTG-------------KLK 276
           + +RL A        L      P      A+       +LS  G                
Sbjct: 251 TPLRLYA----SGRVLDALSEFPDTKSRVAVAVWDSESSLSHDGYPLVHFEEVVIPSDSA 306

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
             A  L+  ++  D      I F   P       + +RL+RA
Sbjct: 307 TFASRLYRSLRDLDQQDWDLILFPEPPVGEEWDGVRDRLQRA 348


>gi|322435110|ref|YP_004217322.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9]
 gi|321162837|gb|ADW68542.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9]
          Length = 349

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 97/322 (30%), Positives = 156/322 (48%), Gaps = 26/322 (8%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-- 79
           G  +A PTETVYGL  ++ +PTA+ +++E K+RP+ +PLI H+++  M+ + A++D    
Sbjct: 32  GGTVAFPTETVYGLGANALDPTAVAKIFEAKQRPSWDPLIVHIANQQMLAEIATLDQQGT 91

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
           +  L   FWPGPLTL+L    T  I    TA+      R+P      +LI   G P+A P
Sbjct: 92  AARLIDAFWPGPLTLLLPR--TQAIPDAVTASRPLVGVRMPAHPVALELIRQTGLPIAAP 149

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN     S T   H+L + +   I  I+DGG + +GLEST+  +  +  + + RPG + 
Sbjct: 150 SANTFSHTSPTTAAHVL-ADLDGRIDAILDGGPTTVGLESTVAEITPDG-LIVYRPGAVT 207

Query: 199 IETLKRAISVELEYC--VDETSTPQ----SPGMLKSHYAPRSQVRLRAIHVNP------- 245
           ++ L   +     +     E S+P     SPG+   HYAP+++V L     +        
Sbjct: 208 LDMLNNLLGQGTAHLHIPPERSSPIESLPSPGVGIRHYAPKARVLLIDSPEDCAANWDLF 267

Query: 246 ----REALIRFGNVPIKNIENAIIS--LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
               R+   + G +   N      +           +  A  LF+ ++  DD   + I  
Sbjct: 268 IENLRQVDDKLGLMLPDNWPAPEHASIFRWGSWSDKETLAHRLFSGLRALDDEHVTHIIC 327

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
                 G+G AI +RL++AA P
Sbjct: 328 PLPSPEGMGAAIRDRLQKAAKP 349


>gi|310819587|ref|YP_003951945.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392659|gb|ADO70118.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 313

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 112/316 (35%), Positives = 160/316 (50%), Gaps = 14/316 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-S 75
           E L +G  IA+PTETVYGLA ++ +  A+RR++ IK RPA +PLI H+     + + A  
Sbjct: 2   EILRSGGVIALPTETVYGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARD 61

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           + P +  LA  FWPGPLTLVL    T+      T    T   RVP       ++   G  
Sbjct: 62  IPPEAWKLAAAFWPGPLTLVLRR--TSRATDAVTGGQDTVALRVPNHPLALAVLSALGGG 119

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           LA PSANR G++S T   H+    +  ++ LI+DGG   +G+ESTIV++       ILRP
Sbjct: 120 LAAPSANRFGRVSPTTAGHV-REDLGSDVDLILDGGPCTVGVESTIVDLSSGDPA-ILRP 177

Query: 195 GGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI------HVNPREA 248
           GGL  E L+  +   +   V  TS+ +  G L SHYAPR+ V L  +          R  
Sbjct: 178 GGLAAEELEHVLGRPVP--VRATSSVRVSGSLASHYAPRAGVTLVEVPEAAARAQALRGQ 235

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLG 308
            +R G +   ++                 AA +L+  ++ AD +G   +        GLG
Sbjct: 236 GLRVGVLGPASLALPPGVPRFDMPEDPAGAAHDLYLRLREADLAGLDLLLACLPSARGLG 295

Query: 309 IAINNRLERAAAPRNQ 324
           +A+ +RL RAAAPR  
Sbjct: 296 LAVRDRLARAAAPRTS 311


>gi|91785085|ref|YP_560291.1| translation factor SUA5 [Burkholderia xenovorans LB400]
 gi|91689039|gb|ABE32239.1| translation factor SUA5 [Burkholderia xenovorans LB400]
          Length = 346

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 153/331 (46%), Gaps = 25/331 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   
Sbjct: 16  AAQIEHAAALLDAGELVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQG 75

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L   +   I    +    +   R P     + 
Sbjct: 76  DPNYWVEHLPADAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 133

Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+E +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 134 LLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDTIHVLDGGASDVGIESTI 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236
           +++       +LRPG +  + +   +          + + P++ G LK+HYAP + +   
Sbjct: 192 LDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPSTPLALL 250

Query: 237 -------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
                   L A HV+ R AL+        +  +A     ++        A  L+  ++  
Sbjct: 251 PFGALETLLAARHVDERVALVA-RVSRAGHWADAEGVHFVAAPEDPHVYARELYGLLRAL 309

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D +  + I    +P+    IA+N+RL RAAA
Sbjct: 310 DRANVTRILIEKLPDTIEWIAVNDRLGRAAA 340


>gi|187925244|ref|YP_001896886.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN]
 gi|187716438|gb|ACD17662.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN]
          Length = 346

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 90/330 (27%), Positives = 147/330 (44%), Gaps = 23/330 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   LDAG  +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H++   
Sbjct: 16  AEQIEHAAALLDAGELVAFPTETVYGLGGDAESPDAVARIYAAKGRPANHPVIVHLAPQG 75

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                   +   +  L   FWPGPLTL+L   +   I    +    +   R P     + 
Sbjct: 76  DPNYWVERLPAEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 133

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L++ +         +A PSANR G +S T  +H+        I  ++DGG S +G+ESTI
Sbjct: 134 LLDAFNALRGGHGGVAAPSANRFGHVSPTTAQHV-RDEFGGAI-HVLDGGASDVGIESTI 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236
           +++       +LRPG +  + +   +          + + P++ G LK+HYAPR+ +   
Sbjct: 192 LDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 250

Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                  L A         +           +A     ++        A  L+  ++  D
Sbjct: 251 PFVALEPLLAARQADERVALVARASRAGRWADAEGVHFIAAPEDPHVYARELYGLLRALD 310

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +  + I    +P+    IA+N+RL RAAA
Sbjct: 311 RANVTRILIEKLPDTIEWIAVNDRLGRAAA 340


>gi|167568960|ref|ZP_02361834.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           C6786]
          Length = 341

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 24/331 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   LDAG  +A PTETVYGL  D+++P A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AAQIDEAAALLDAGELVAFPTETVYGLGGDAQSPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L   +   I    +   ++   R P     + 
Sbjct: 70  DPGYWVDELPADAKKLIDAFWPGPLTLILKRAAH--IPDAVSGGQESVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+        +  ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHV-RDEFGDSV-HVLDGGASDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQV--- 236
           +++       +LRPG +  + +   + V        + + P++ G LK+HYAPR+ +   
Sbjct: 186 LDLSRGFPA-LLRPGRVTPQQIADVLGVAPRLPDGGDATAPRASGTLKAHYAPRTPLALA 244

Query: 237 ---RLRAIHVNPREALIRFGNVPIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIA 289
              RL  +    R+A  R   V   +   A    +    ++        A  L+  ++  
Sbjct: 245 PFERLERLLSAARDAGERIALVARASRAGAWAHTDGVHFVAAPEDPLVYARELYGLLRAL 304

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D +  + I    +P+    IA+N+RL RAAA
Sbjct: 305 DRAQVARILVEKLPDTAEWIAVNDRLGRAAA 335


>gi|309780644|ref|ZP_07675386.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA]
 gi|308920567|gb|EFP66222.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA]
          Length = 337

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 92/329 (27%), Positives = 152/329 (46%), Gaps = 18/329 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            ++  +  L +A   L+AG  +A PTETVYGL  D+ NP AI ++Y  K RP+ +P+I H
Sbjct: 9   YTMPSAERLDEAARRLEAGELVAFPTETVYGLGADAENPQAIAKIYAAKGRPSNHPVIVH 68

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V D + +       P ++L L + FWPGPLTL+L       I         +   R P  
Sbjct: 69  VVDGADISYWTDEVPGIALQLIEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSH 126

Query: 123 FTKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
              + +    +     +A PSAN+ GQ+S T  +H+       +   +++G    +G+ES
Sbjct: 127 PVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIES 184

Query: 179 TIVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++    +     +LRPG +  + ++R    EL    D  +   S G LK+HYAPR+ 
Sbjct: 185 TIIDLSRLDQGIGPVLLRPGAITPDDIERVTG-ELPAAPDAAAPRAS-GTLKAHYAPRTP 242

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLS----KTGKLKEAAFNLFNYMKIADD 291
           + L +    P        +  I  +   +   +              A  L+  ++  D 
Sbjct: 243 LYLLSAADVPARLAALPADKRIVWLGTPVALRDGCDQRVAPATPGAYANALYALLRELDR 302

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G  +I   ++ +     A+N+RL RAAA
Sbjct: 303 GGYDAIWVETLADTPAWAAVNDRLRRAAA 331


>gi|164662685|ref|XP_001732464.1| hypothetical protein MGL_0239 [Malassezia globosa CBS 7966]
 gi|159106367|gb|EDP45250.1| hypothetical protein MGL_0239 [Malassezia globosa CBS 7966]
          Length = 471

 Score =  271 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 111/403 (27%), Positives = 162/403 (40%), Gaps = 93/403 (23%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++L KA   L +G  +A PTETVYGL   +    A  R+Y  K RPA NPLI HVSD  M
Sbjct: 53  SSLEKAASHLRSGQLVAFPTETVYGLGACALRTDAAERIYHAKNRPADNPLIVHVSDRRM 112

Query: 70  VKKH----ASVDPLSLHLAKLFWPGPLTLVLDL----LSTTDIHPLSTANLKTACFRVPC 121
           + K        +     L K FWPGPLTL+  +         I    T    T   R+P 
Sbjct: 113 LSKLLPSKYPYNAACEALMKAFWPGPLTLLFPVGLDDQGLPRIPSTVTCGQSTVGLRMPS 172

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLES 178
               + LI   G P+A PSAN SG+ S T   H+ +  +     +  I+DGG   IGLES
Sbjct: 173 HPIARALISLAGVPVAAPSANASGRPSPTTAGHVFTD-LGPRHVLSYIVDGGECSIGLES 231

Query: 179 TIVNV-QCEKKVRILRPGGLEIETLKRAI-------------SVELEYCVDETSTPQSPG 224
           T+V+      +VR+LRPGG+ +E + +A+               +L     + + P +PG
Sbjct: 232 TVVDATTTPGEVRVLRPGGISVEQIAQALEQAGLSSLSLRVYGRDLARSAQQEAAPTTPG 291

Query: 225 MLKSHYAPRSQVRLRAIHVNP--------------REALIRFGNVPIKNIENAIISLNL- 269
           M   HY+P ++V L  I                  R    +   + +    ++ + L+L 
Sbjct: 292 MKYRHYSPEARVLLVRIDDGEHPTVHELLRDVAASRAQAEQEARIGLLCAHDSPLILSLP 351

Query: 270 ----------------SKTGKLKE--------------------------AAF-NLFNYM 286
                           S      E                          AA   LF+ +
Sbjct: 352 DSALTRWAADATHASSSSFTDKAESRLSPVVHVNGMKLCLYSLGRRDTPSAAAQRLFDGL 411

Query: 287 KIADDS---------GASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  D              +I    +   G+G+AI NRL +AA+
Sbjct: 412 RTLDACVPWCDGKPGACDAIITDVVDESGVGLAIMNRLRKAAS 454


>gi|225874536|ref|YP_002755995.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225791509|gb|ACO31599.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 343

 Score =  271 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 169/333 (50%), Gaps = 28/333 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ +A E L AG  +A PTETVYGL  ++ +  A+  ++E K+RPA +PLI HVS + M+
Sbjct: 11  SIARAAEILRAGGTVAFPTETVYGLGANALDAAAVAGIFEAKQRPAWDPLIVHVSSLEML 70

Query: 71  KKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            + A      +  LA++FWPGPLT++L    + ++    TA       R+P     + LI
Sbjct: 71  SQVADELCDNAKRLAEVFWPGPLTMLLPR--SANVPDAVTAGRPLVGVRMPSHPIAQALI 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G P+A PSAN  G+IS T  +H+ +  +   I  I+DGG +  GLEST++  + +  
Sbjct: 129 EAAGVPVAAPSANSFGRISPTTAQHV-AEDLEGRIDAILDGGETIHGLESTVIEPRADHS 187

Query: 189 VRILRPGGLEIETLKRAISVELEY--CVDETSTPQ---SPGMLKSHYAPRSQVRLRAIHV 243
           + I RPG +  + L+   +  +EY     E S P+   SPG+   HYAPR++++L     
Sbjct: 188 I-IYRPGVVTAQQLRAVCAGSVEYYEPAHEKSAPESLPSPGVGLRHYAPRARLQLVEGAG 246

Query: 244 NPREALI------------RFGNVPIKNIENAII-----SLNLSKTGKLKEAAFNLFNYM 286
             +   +            R G +  ++ + A+I          +    +E A  LF  +
Sbjct: 247 EAQMTALRETVLDAERIGERVGVMLPESFQTALIGCAAHVYRWGRWEDKEELAQRLFAGL 306

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +  D  G + I        G+G AI +RL +AA
Sbjct: 307 RQLDAEGLTLIVCPLPEAKGIGRAICDRLGKAA 339


>gi|160937847|ref|ZP_02085206.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439286|gb|EDP17039.1| hypothetical protein CLOBOL_02739 [Clostridium bolteae ATCC
           BAA-613]
          Length = 412

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/239 (35%), Positives = 124/239 (51%), Gaps = 11/239 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L +G  +A PTETVYGL  ++ +  A R++Y  K RP+ NPLI HVS + 
Sbjct: 16  DEELKEAASILRSGGLVAFPTETVYGLGGNALDEDAARKIYAAKGRPSDNPLIAHVSCVE 75

Query: 69  MVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            V       P +   L + FWPGPLT++     +  +   +T  L T   R+P      +
Sbjct: 76  EVAPLVKEIPEAGRKLMEAFWPGPLTMIFP--KSEKVPYGTTGGLDTVAIRMPDDPVANR 133

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI   G P+A PSAN SG+ S T   H+    +   I +IIDGG   IG+ESTIV+V   
Sbjct: 134 LIALAGVPVAAPSANTSGRPSPTTADHVW-QDMNGRIEMIIDGGPVGIGVESTIVDVSSA 192

Query: 187 KKVRILRPGGLEIETLKRAIS-VELEYCV----DETSTPQSPGMLKSHYAPRSQVRLRA 240
               +LRPG + +E L   +  V ++  +         P++PGM   HYAP++ + L  
Sbjct: 193 VP-SVLRPGAITMEMLAEVLGEVSVDPAILGPLSADVRPKAPGMKYKHYAPKADLTLVE 250



 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAII---SLNLSKTGKLKEAAFNLFNYMKIADDS 292
            ++R +     EA  + G +               ++         A NL+  ++  DD 
Sbjct: 319 CKVRELSREKIEAGYKVGVICTDESRGCYTDGEVRSIGARKSQASVAHNLYALLREFDDL 378

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           G   I   S P   LG AI NRL +AA  +
Sbjct: 379 GVDYIFSESFPKDHLGQAIMNRLSKAAGYK 408


>gi|332285295|ref|YP_004417206.1| hypothetical protein PT7_2042 [Pusillimonas sp. T7-7]
 gi|330429248|gb|AEC20582.1| hypothetical protein PT7_2042 [Pusillimonas sp. T7-7]
          Length = 346

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 147/338 (43%), Gaps = 32/338 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L  A   L  G  +A PTETVYGL  D+ NP A+  +Y  K RPA +P+I HV+  +
Sbjct: 12  EQQLSAAARRLAQGGLVAFPTETVYGLGADAENPQALASIYAAKGRPANHPVIVHVAPEA 71

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +    ASV   +  L + FWPGPLTL+L       I    +    +   R P     + 
Sbjct: 72  DLGYWAASVPAEARALIQAFWPGPLTLILPRAPH--IPAAVSGGQDSIGLRCPSHPVAQA 129

Query: 127 LIETY-------GHPLAIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLE 177
           L+  +          +A PSAN+ GQ+S T+  H+ +    +  +  L+++GG S++G+E
Sbjct: 130 LLREFARQKPNGQGGVAAPSANKFGQVSPTHAAHVRTEFPELGTDQLLVLEGGPSEVGIE 189

Query: 178 STIVNVQ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
           STIV+V          +LRPG +    L   +         +   PQ  G LK+HYAP +
Sbjct: 190 STIVDVSRLGLGVGPVLLRPGHISAAQLAEVLGAP--PARPDQDAPQVSGSLKAHYAPHT 247

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAIISLN------------LSKTGKLKEAAFNL 282
            +++  +      A     N        A++  N            L         A  L
Sbjct: 248 PLQVLPLDQLLDAARQSLPNNLSG--RTAVVVFNPELLNTMSDVDTLKCNADPAVYAREL 305

Query: 283 FNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +  ++  D+ G   I     P      A+N+R+ RAAA
Sbjct: 306 YALLRRLDEQGYDRILMEQPPRTATWQAVNDRIGRAAA 343


>gi|297623264|ref|YP_003704698.1| Sua5/YciO/YrdC/YwlC family protein [Truepera radiovictrix DSM
           17093]
 gi|297164444|gb|ADI14155.1| Sua5/YciO/YrdC/YwlC family protein [Truepera radiovictrix DSM
           17093]
          Length = 356

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/352 (30%), Positives = 164/352 (46%), Gaps = 35/352 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M          L +A E L  G  +A PTETVYGL  D+RN  A+R ++ IK RPA +P+
Sbjct: 1   MARTHPVSPQHLTEAAEALRQGRLVAFPTETVYGLGADARNEAAVREIFRIKGRPADHPV 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H+   + ++  A +V  L+  LA+ FWPGPLTLVL    +  +    T    T   RV
Sbjct: 61  IVHLPSAAHLEAWAVAVPELAYALAERFWPGPLTLVLQRHPS--VLDAVTGAQATVGLRV 118

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L++ +G  +A PSANR G+IS T  +H+  + +   + L++DGG   +GLES
Sbjct: 119 PGHPVALALLDAFGGGVAAPSANRFGRISPTTAEHV-RAELGDAV-LVLDGGPCAVGLES 176

Query: 179 TIVNVQ----CEKKVRILRPGGL---EIETLKRAISVELEYCVDETS-------TPQSPG 224
           TI++V      E   R+LRPGG+    ++ + RA+ +E+E  V   +       TP+  G
Sbjct: 177 TILDVSRVGDAEGAPRLLRPGGIALGALQEVARALGLEIEDAVQPGAGTRRGAPTPRVSG 236

Query: 225 MLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSK------------- 271
            L SHYAP +  RL         A            E A+++                  
Sbjct: 237 SLASHYAPATPARLTEDAAADLAAYWARHPRAGGVGEVAVLARRPQPPLGAAARALRRWR 296

Query: 272 --TGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
                  +    L+  ++  D  G + +   + P      A+ +RL RA AP
Sbjct: 297 VLPETPADYGRLLYAALRELDALGCALLLVEAPPPTPEWAAVADRLRRATAP 348


>gi|319778521|ref|YP_004129434.1| Sua5 subfamily-like protein [Taylorella equigenitalis MCE9]
 gi|317108545|gb|ADU91291.1| Sua5 subfamily-like protein [Taylorella equigenitalis MCE9]
          Length = 330

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 151/334 (45%), Gaps = 25/334 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ    T    +++A  +L  G  +A+PTETVYGL  D+ N  A+ R+Y +K RP  +PL
Sbjct: 1   MQFSDTT----IKQAALYLLDGGLVALPTETVYGLGADALNKDAVERIYSVKGRPTNHPL 56

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV   + +      +   +  L K FWPGPLTLVL    + ++    T    T   R 
Sbjct: 57  IVHVHKDADLNFWCSEIPDDAKKLIKAFWPGPLTLVLP--KSQNVPDYITGGQSTVAIRS 114

Query: 120 PCG-FTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           P     + ++  +        +  PSAN  G +S T  +H+        I   IDGG S+
Sbjct: 115 PNHPIAQAVLLEFSKLKNNAGIVAPSANLFGHVSPTKNEHVKDEFPSDNI-YFIDGGSSE 173

Query: 174 IGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
           +G+ESTI+++   K    ILRPG +  + + + + VE +    + S P   G LKSHYAP
Sbjct: 174 VGIESTILDLSRPKIGPVILRPGHITKKDIYKVLGVEPKD--KDISAPVVSGSLKSHYAP 231

Query: 233 RSQVR-LRAIHVNPREALIRFGNVPIKNIEN------AIISLNLSKTGKL-KEAAFNLFN 284
           +  +  L  I        ++   V I    N        I +   K   L  E A  ++ 
Sbjct: 232 KIPIYPLDDISNLDFINHLKHKKVAIIYHSNNHYDILNEIDVIYYKLPSLSTEYASKIYE 291

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERA 318
            ++  +      I   S+P      A+ +R+ RA
Sbjct: 292 TLRKIESQNMDLILLESLPLDAEWDAVRDRMNRA 325


>gi|89899013|ref|YP_521484.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118]
 gi|89343750|gb|ABD67953.1| translation factor SUA5 [Rhodoferax ferrireducens T118]
          Length = 389

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 152/380 (40%), Gaps = 67/380 (17%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+    ++++    + + AG  + +PTETVYGLA D+ N TA+ +++  K RPA +PLI 
Sbjct: 2   ILDGFAASSIALGAQRIRAGGLLGLPTETVYGLAADAENDTAVAQIFTAKGRPADHPLIV 61

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV D   V   A  V   +  L + FWPGPLTL+L       +   +     T   R P 
Sbjct: 62  HVRDAVCVGHFAAQVPDFADRLMQAFWPGPLTLILPRRPG--VASAAAGGQDTIGLRCPS 119

Query: 122 GFTKKLIETY----------------------------GHPLAIPSANRSGQISITNVKH 153
               +++                                  +A PSAN+ G++S T   H
Sbjct: 120 HPVAQMLLQALLQNGGQNPTHSESAKPQAKELASQPHGVWGIAAPSANQFGRVSPTTAAH 179

Query: 154 ILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL--- 210
           + S        LI+DGG   +G+ESTI++    + V +LRPG +  E ++ A  +++   
Sbjct: 180 VQSEF--GPDLLILDGGACTVGIESTIIDCTRGQPV-LLRPGAITREQVQAACGLKVLLK 236

Query: 211 -EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIIS--- 266
            E   D    P++ G L+SHYAP++ VRL               +         +     
Sbjct: 237 DELATDAAPAPKASGTLESHYAPKATVRLMDAAALRAALARWVADEAAMGPAAGVAVATR 296

Query: 267 --------------------------LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
                                     L+         AA  LF  ++  D  G   I   
Sbjct: 297 ARAQAPALPTIAVYARSVHPNQSSRLLSQHMPADATAAARELFAVLRRLDAQGVQQIWIE 356

Query: 301 SIPNHGLGIAINNRLERAAA 320
           + P       + +RL+RAA+
Sbjct: 357 TPPAGAEWDGVRDRLQRAAS 376


>gi|219847348|ref|YP_002461781.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM
           9485]
 gi|219541607|gb|ACL23345.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aggregans DSM
           9485]
          Length = 345

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/324 (29%), Positives = 145/324 (44%), Gaps = 26/324 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T   A+  A E L  G  +A PTETVYGL   + + TA+  ++  K RP  +PLI H++ 
Sbjct: 8   TSPQAIAVAAELLRRGELVAFPTETVYGLGGHALDQTAVAAIFAAKGRPTSDPLIVHLAT 67

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            + + + A  + PL+  LA  FWPGPLTL++       +    TA  +T   RVP     
Sbjct: 68  AADLPRVAVDIPPLATELATHFWPGPLTLIVPRHPH--VPRAVTAGRETVAVRVPSHPVA 125

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L+   G P+A PSANR G  S T   H+L + +   I  IIDGG + IG+EST+++  
Sbjct: 126 HALLVAAGVPVAAPSANRFGHTSPTTADHVL-ADLDGRIAAIIDGGPTPIGIESTVLDCT 184

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLR-- 239
                 +LRPGG+ +E L         Y      +     SPG+L  HYAP  ++ L   
Sbjct: 185 TN-PPTLLRPGGISLEALTAVAGPIQTYHRTTNKSETGFVSPGLLDRHYAPDHELWLFSG 243

Query: 240 ---------------AIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                          A+    R  L+      +   +  +   +L    + +  A  L+ 
Sbjct: 244 PLPDVLHRLRIETETALAAGLRIGLLLPAEDLMLFDDLPVEMESLGPATEPETMAQRLYA 303

Query: 285 YMKIADDSGASSIAFSSIPNHGLG 308
            ++  DD     I    +   GLG
Sbjct: 304 ALRALDDRHLDRIFTRDLDEAGLG 327


>gi|289450238|ref|YP_003475652.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184785|gb|ADC91210.1| Sua5/YciO/YrdC/YwlC family protein [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 403

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/378 (26%), Positives = 160/378 (42%), Gaps = 75/378 (19%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79
            G  + +PTETVYGL V++    A+  +Y +K RP+ NPLI HV+D   +      + PL
Sbjct: 24  EGKLVVMPTETVYGLGVNALMGDAVPEVYRVKGRPSDNPLIVHVADFVDIPPLVQKISPL 83

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
           +  +   F PGPLT++L    +  I    +  L T   R+P       LI+  G P+A P
Sbjct: 84  ADFIMHRFMPGPLTVILP--KSDLIPLQVSGGLATVGIRMPSHPIAHALIKLAGVPVAAP 141

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ S+TN    L   +  ++P I+DGG S +GLEST++++  +   RILRPG ++
Sbjct: 142 SANLSGKPSLTNGPDCL-EELSGKVPFIVDGGASDVGLESTVLDLTSDMP-RILRPGKID 199

Query: 199 IETLKRA-----------------ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
              ++                   +S+     +     P +PGM   HYAP+++VR+   
Sbjct: 200 QAAVQAVCDEFKGKVMDGGQSAPMVSLGYLRRLAANEKPAAPGMKYRHYAPQAEVRIVNA 259

Query: 242 HVNPREALIRFG--------------NVPIKNIENAIIS--------------------- 266
                 ++ R                 + +     A+ S                     
Sbjct: 260 DFATGSSVARAMGEAYAACLKEYPAEEIGVFAAREAVASCLNVAATSAAATSTAATADAA 319

Query: 267 --------------LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
                         L   + G +  AA  LF   +  D      I    +P  G+G A  
Sbjct: 320 ADAVSAVARVGLPLLAYGEYGDIAAAAHGLFTAFRALDRRKVKVILTHELPQDGIGAAYM 379

Query: 313 NRLERAAAPRNQSQRIVP 330
           NRL +AAA   ++Q + P
Sbjct: 380 NRLRKAAA---KAQALPP 394


>gi|167769909|ref|ZP_02441962.1| hypothetical protein ANACOL_01250 [Anaerotruncus colihominis DSM
           17241]
 gi|167667900|gb|EDS12030.1| hypothetical protein ANACOL_01250 [Anaerotruncus colihominis DSM
           17241]
          Length = 342

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 18/313 (5%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS- 80
           G  + IPTETVYGLA ++ +P A   +Y  K RP  NPLI H++ +  +       P + 
Sbjct: 28  GKLVVIPTETVYGLAANALDPAAAAAIYTAKGRPCDNPLIVHIASLDELPPLVKAVPDAL 87

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPS 139
             LA  FWPGP+T++L+   +  +   +T  L T   R+P     + LI   G PLA PS
Sbjct: 88  YRLADRFWPGPMTVILE--KSDLVPSATTGGLDTVAVRMPAHPAARALIRRAGVPLAAPS 145

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG  S T  +H +   +   +  I+DGG  ++GLEST++ + CE+  +ILRPG + +
Sbjct: 146 ANLSGSPSPTCARHCI-DDLDGRVDAIVDGGPCEVGLESTVLTL-CEQPPQILRPGAVTL 203

Query: 200 ETLKRA-----ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALI---- 250
           E  ++      +   +   + +     SPGM   HYAP+++V L      P    +    
Sbjct: 204 EMARQVLADIELGPGVFERLPDGVRAASPGMKYKHYAPKARVILVHAARGPFANFLASRK 263

Query: 251 -RFGNVPIKNIENAI--ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGL 307
            RFG + +   E A+    +           A  LF+ ++  D +G   +        G+
Sbjct: 264 GRFGALCLAGDEQALSCPCIVYGAQDDAASQAHGLFDALRQIDRAGLPLVYARVDGAGGV 323

Query: 308 GIAINNRLERAAA 320
           G A+ NRL RAA 
Sbjct: 324 GQAVYNRLLRAAG 336


>gi|118594847|ref|ZP_01552194.1| Putative translation factor [Methylophilales bacterium HTCC2181]
 gi|118440625|gb|EAV47252.1| Putative translation factor [Methylophilales bacterium HTCC2181]
          Length = 324

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/325 (28%), Positives = 169/325 (52%), Gaps = 15/325 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++  TDS+ + +A   L  G  + +PTETVYGLA D+ + +AI+ ++ +KKRP  +PLI 
Sbjct: 5   LLKATDSDCINQAVTLLKDGKLVGLPTETVYGLAADATHTSAIQEIFRVKKRPPNHPLIL 64

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H+ D+S + + A ++  ++  LAK F PG L+++L    +  +    T      C R+P 
Sbjct: 65  HLPDLSDLSQWAINIPDITYALAKQFMPGSLSVLLHKNPS--VSNAITGGSNKICIRIPH 122

Query: 122 GF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
              T K+IE  G P+  PSAN  G+IS T+ +H++   +  EI  ++DGG  ++G+ESTI
Sbjct: 123 HETTLKIIERLGSPIVAPSANIFGRISPTSAEHVM-QDLFGEIDAVVDGGECRVGIESTI 181

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V++       +LRPGG+ +  L++A+  ++       ++    G L +HY P +++    
Sbjct: 182 VDLTTPIP-TLLRPGGVNLFALEKALHSKIFIPDSVNTSI--SGNLVNHYQPTTKLTPIH 238

Query: 241 IHVNPREALIRFGN------VPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
                   L+   +      +  +++    I+  L     + + +   +  +++ D +G 
Sbjct: 239 KEDIMTHQLMGASDSTTTIFLLFEDLHELQINKYLMPM-DVHKYSQLFYGVLRVLDKAGF 297

Query: 295 SSIAFSSIPNHGLGIAINNRLERAA 319
             I     P     +AIN+R+ +A+
Sbjct: 298 KEIFIQIPPKSPEWLAINDRILKAS 322


>gi|163857906|ref|YP_001632204.1| putative translation factor [Bordetella petrii DSM 12804]
 gi|163261634|emb|CAP43936.1| putative translation factor [Bordetella petrii]
          Length = 352

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 92/329 (27%), Positives = 155/329 (47%), Gaps = 32/329 (9%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-S 75
           E L AG  +A PTETVYGL  D++NP A+ R+Y  K RP+ +P+I HV+  + +     +
Sbjct: 19  ERLLAGELVAFPTETVYGLGADAQNPEAVARIYAAKGRPSNHPVIVHVAPGADLGYWVRN 78

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--G 132
           + P +  L   FWPGPLTL+L            +    +   R P     + L+  +  G
Sbjct: 79  ISPAARQLIDAFWPGPLTLILPRAPHAGAA--VSGGQDSIGLRCPSHPVAQALLRAFAAG 136

Query: 133 HP-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQC 185
            P     +A PSAN+ G +S T  +H+      +      ++DGG +++G+ESTIV++  
Sbjct: 137 KPGGHGGVAAPSANKFGHVSPTRAEHVRGEFPQEVAQGMPVLDGGPAQVGIESTIVDLSR 196

Query: 186 EKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            ++     +LRPG +    ++  +  ++   + + + P++ G LK+HYAP + + L    
Sbjct: 197 LEQGVGPVLLRPGHVTPAQIEAVL--DMPVAMPDAAAPRASGTLKAHYAPHTPLELMTTQ 254

Query: 243 VNP-----------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
                         R A++ FG  P +              G+    A  L+  ++  D 
Sbjct: 255 HLMDAARGRGLPAGRVAIVAFGAAPAELDARVAWRQVPDDAGR---YAQALYTMLRDLDG 311

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            G + I   + P      A+N+R+ RAAA
Sbjct: 312 GGYARILVQAPPADDAWRAVNDRIGRAAA 340


>gi|297539832|ref|YP_003675601.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301]
 gi|297259179|gb|ADI31024.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301]
          Length = 327

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 98/322 (30%), Positives = 159/322 (49%), Gaps = 18/322 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +A   L  G  +AIPTETVYGLA D+ N  A+++++  K+RPA +PLI H++DIS V
Sbjct: 4   SLDEAARRLQNGEVVAIPTETVYGLAADATNDIALQKIFTTKQRPADHPLIVHIADISQV 63

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            +       +++ LAK FWPG LTL+L   +   +  +      T   RVP      +L+
Sbjct: 64  TEWVTDFPEVAVELAKAFWPGALTLILP--AKHHVSRVVRGGEPTIALRVPNHPIALELL 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +     +A PSAN   Q+S T   H+    +  ++P ++DGG  ++G+ESTIV+V  + +
Sbjct: 122 KLSKLSVAAPSANLFTQLSPTTATHV-EVGLGADVP-VLDGGACQVGIESTIVSVAADGQ 179

Query: 189 VRILRPGGLEIETLKRAIS------VELEYCVDETSTPQSPGMLKSHYAPRSQVRL---R 239
            ++LRPG +    + +         VE +     ++TP++PG    HY+PR+ + L   R
Sbjct: 180 WQLLRPGMISEADIAKVAGRPQRKVVESDKAAATSTTPKAPGQHALHYSPRTPLFLFKDR 239

Query: 240 AIHVNPREALIRFGNVPIK---NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           A  +   E LI  G           +         + +  E A  L+  +   D     S
Sbjct: 240 AALIVTSEQLIAAGKTCAALLIGDGDMPQCHVAHLSNQPAEVAEQLYGALHQLDALKVDS 299

Query: 297 IAFSSIPNHGLGIAINNRLERA 318
           +     P+     A+ +RL RA
Sbjct: 300 LLVELPPDTSPWAAVLDRLSRA 321


>gi|296135279|ref|YP_003642521.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12]
 gi|295795401|gb|ADG30191.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12]
          Length = 334

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 98/322 (30%), Positives = 153/322 (47%), Gaps = 17/322 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L+AG  + +PTETVYGLA D+ N  A+ ++Y  K RPA +P+I H+   +
Sbjct: 12  PREIIEAVRRLEAGELVGLPTETVYGLAADAENAQAVAKIYAAKGRPADHPVIVHIHRAA 71

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +   AS  P  +  LA  FWPGPLTL+L       +         T   R P     + 
Sbjct: 72  DLGHWASDVPEPARKLAAAFWPGPLTLILPRKPG--VADACAGGQSTIGLRCPSHPVAQA 129

Query: 128 IET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +          LA PSANR G+IS T   H+  + +  ++ L++DGG   +G+ESTIV+ 
Sbjct: 130 VLAIFKGGQGGLAAPSANRFGRISPTTAAHV-HAELGDDL-LVLDGGACAVGIESTIVDC 187

Query: 184 QCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQV------ 236
              +  RILRPG L+   + + + V E +      S P+  G+L +HYAPR+ +      
Sbjct: 188 T-AQPPRILRPGQLQAADIAQTLGVAEADLLRPAESAPRVAGVLPAHYAPRTPLQWCSRE 246

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           ++ A      +A  R G +       A  S  ++        A  L+  ++  D +G   
Sbjct: 247 QINARWEIDADAGRRIGVLAFPPQPRAPHSSWVTLPADPAAYAQQLYAVLRKLDAAGLEE 306

Query: 297 IAFSSIPNHGLGIAINNRLERA 318
           I    +P     +A+ +RL RA
Sbjct: 307 ICVEVLPPSPAWLALRDRLTRA 328


>gi|111115564|ref|YP_710182.1| hypothetical protein BAPKO_0778 [Borrelia afzelii PKo]
 gi|216263452|ref|ZP_03435447.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia afzelii
           ACA-1]
 gi|110890838|gb|ABH02006.1| hypothetical protein BAPKO_0778 [Borrelia afzelii PKo]
 gi|215980296|gb|EEC21117.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia afzelii
           ACA-1]
          Length = 334

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M +  I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MILTEIIHSNQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPIENPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT V     +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKRFSPGPLTYVF--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+T   P+  PSAN S + S T+ +  L   +   +  II    +K   IG
Sbjct: 119 PANKIALNLIKTSKVPIVAPSANISKRPSSTSFEMALKE-LNGLVKGIIKTEKTKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST++    +  V ILRPG +  + +++ +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVIGFDLKDNVLILRPGAITKKMIEKELQGKYTVNYAETKIELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N+     L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKPTLKSYLFNFLWDKKNIKVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  +     I    + +  LG +INNR+ +A++ R
Sbjct: 298 -VNSEKDYKQILSEFVKDEELGYSINNRIRKASSNR 332


>gi|88859366|ref|ZP_01134006.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2]
 gi|88818383|gb|EAR28198.1| hypothetical protein PTD2_20322 [Pseudoalteromonas tunicata D2]
          Length = 324

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 97/322 (30%), Positives = 157/322 (48%), Gaps = 11/322 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++S      + KA + ++ G  +A+PTETVYGLA D+RN  A+ +++  K RP  +PLI 
Sbjct: 5   VLSAQQQADIAKAAQLIEQGELVAVPTETVYGLAADARNAQAVAKIFAAKGRPTNHPLIV 64

Query: 63  HVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           H++D + +   A  V   +L LA  FWPGPLTL+L+      +  + T  L T   RVP 
Sbjct: 65  HLADHTKMADWAKTVPETALKLAAAFWPGPLTLLLN--KAEGVSDVVTGGLTTVGLRVPA 122

Query: 122 GFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L++ Y   +A PSAN   ++S T  +H+L+  +  ++  ++DGG  + GLESTI
Sbjct: 123 HPALLSLLQQYDLAVAAPSANPYKKLSPTCAEHVLT-GLNGKLAAVLDGGACEHGLESTI 181

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
           V++  +  V+ILR G +    L   +   +            PG +K+HY P + +R+  
Sbjct: 182 VDLTGD-TVQILRAGPITANELSAVLGQPVTQPQQHNKAV--PGNVKAHYQPNTLLRVMN 238

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLS---KTGKLKEAAFNLFNYMKIADDSGASSI 297
                         + + + E      N+         K+    LF  +  AD  G + I
Sbjct: 239 KTQLNEALQSVTAQIALLSFETKSDKPNVHFVAMPTDAKDYGQVLFRELGKADTLGLAEI 298

Query: 298 AFSSIPNHGLGIAINNRLERAA 319
              S P     +A ++RL+RAA
Sbjct: 299 WLESPPQGQQWLAAHDRLKRAA 320


>gi|187477397|ref|YP_785421.1| hypothetical protein BAV0893 [Bordetella avium 197N]
 gi|115421983|emb|CAJ48504.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 341

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 142/326 (43%), Gaps = 20/326 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            ++ A   L  G  +A PTETVYGL  D+ N  A+  +Y  K RPA +P+I H++     
Sbjct: 5   QIQAAARRLLEGGLVAFPTETVYGLGADAENAQAVAGIYAAKGRPANHPVIVHIAPQGDP 64

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
              A  V P +  L + FWPGPLTL+L            +    +   R P     + + 
Sbjct: 65  GYWASEVPPEASKLIEAFWPGPLTLILKRRPGMGEA--VSGGQDSIGIRCPSHPVAQALL 122

Query: 130 TY--------GHPLAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLEST 179
                        +A PSAN  G +S T   H+ S    +      ++DGG S++G+EST
Sbjct: 123 AAFAAQKPGGQGGVAAPSANTFGHVSPTLAAHVRSEFPREVAAGMPVLDGGASEVGIEST 182

Query: 180 IVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
           I+++    +     +LRPG +  E + + + V +     + + P++ G LK+HYAPR+ +
Sbjct: 183 ILDLSRLDQGMGPVLLRPGHISAEQIAQVLGVAVRR--PDAAAPRASGTLKAHYAPRTPL 240

Query: 237 RLRAIHVNPREALI-RFGNVPIKNIENAIISLNLSK-TGKLKEAAFNLFNYMKIADDSGA 294
            L      P   +  R   V           L   +        A  L+  ++  D  G 
Sbjct: 241 ELVDRASRPLGKIHGRIALVAYSWPPQEGDGLIWHRVPADPARYAQALYATLRELDAQGY 300

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I   + P      A+N+R+ RAAA
Sbjct: 301 ERIWVEAPPTDAAWDAVNDRIGRAAA 326


>gi|119897671|ref|YP_932884.1| hypothetical protein azo1380 [Azoarcus sp. BH72]
 gi|119670084|emb|CAL93997.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 343

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 102/326 (31%), Positives = 157/326 (48%), Gaps = 18/326 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++ A E L AG  + +PTETVYGLA D+RNP A+RR++  K RPA +PLI H+  + 
Sbjct: 11  EDNIQSAAEALRAGELVGLPTETVYGLAADARNPVAVRRIFAAKGRPADHPLIVHLPALD 70

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
            + +  A+V   ++ L + FWPGPLTL+L       +    T    T   RVP       
Sbjct: 71  QLSQWAAAVPVEAVALGRAFWPGPLTLILRRQPH--VPDEVTGGQDTVGVRVPAHPAALA 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +G  LA PSANR G+IS T   H+ +  +   + ++IDGG  ++G+ESTI+++   
Sbjct: 129 LLAAFGSGLAAPSANRFGRISPTTAAHV-AEELGDAVAMVIDGGACEVGIESTILDLSRL 187

Query: 187 KK--VRILRPGGLEIETLKRAISVEL-----EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                 ILRPG +  + +   I                  P+  G L +HYAPR+ +RL 
Sbjct: 188 DTCGPVILRPGAISADAIAAVIGQRPLGRAESEGAGGAQAPRVAGALAAHYAPRTPMRLV 247

Query: 240 AIHVNPREALIRF-GNVPIKNIENAIISLNLSKT-----GKLKEAAFNLFNYMKIADDSG 293
                  EA  +    V    +  A  S     T       ++  A  L+  ++  D + 
Sbjct: 248 EPAALADEAGRQLAAGVRTGVLVRAGASFPRGVTVRMAPADVEGYAHALYANLRDLDAAE 307

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAA 319
              I   ++P      A+++RL RAA
Sbjct: 308 LDLILVEAVPLETAWDAVHDRLGRAA 333


>gi|329767330|ref|ZP_08258855.1| hypothetical protein HMPREF0428_00552 [Gemella haemolysans M341]
 gi|328836019|gb|EGF85710.1| hypothetical protein HMPREF0428_00552 [Gemella haemolysans M341]
          Length = 343

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 169/342 (49%), Gaps = 23/342 (6%)

Query: 2   QIMSITDSNALRKACEFL----DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I++I+ S    +    L      G  IAIPTETVYGL+ ++ N  A+ ++YE K RP+ 
Sbjct: 4   EIINISKSENKEEIYSKLTTYYKEGKLIAIPTETVYGLSANAMNDEAVSKIYEAKGRPSD 63

Query: 58  NPLICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           NPLI H  ++S +    + +  ++  L   FWPGP+TL+L+      +    TA L T  
Sbjct: 64  NPLIVHFYEMSQLDSIVNYNDENIKKLINNFWPGPMTLILNAKDNNGVSKKVTAGLNTLA 123

Query: 117 FRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     +++++     LA PSAN SG+ S T  +H+    +  +I +II+   S IG
Sbjct: 124 VRMPSNITAREILKETEVLLAAPSANTSGKPSPTKFEHVY-HDLNGKIDVIIEDEQSDIG 182

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE----LEYCVDETSTPQSPGMLKSHYA 231
           LEST+++      + I RPG +  E ++  +        E  + + +TP +PGM   HY+
Sbjct: 183 LESTVIDCT-RYPLVIARPGEITKEDIEGVLGEGSVKYNEEILTKNTTPIAPGMKYRHYS 241

Query: 232 PRSQVRLRAIHVNPREALIRF-----GNVPIKNIENAIISLNLSK------TGKLKEAAF 280
           P + + L         ++++      G +  K +E+ +  LN+S          ++++  
Sbjct: 242 PEADLVLFNDSFEKLISILKERDKKTGFITYKEMESEVDFLNVSVKYLADNEKSVEQSNK 301

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           NL+N ++  D+     I    I       A+ NRL +A + +
Sbjct: 302 NLYNILREFDEEEVEEIFILPIEETKENKALLNRLNKAISKK 343


>gi|300310011|ref|YP_003774103.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1]
 gi|300072796|gb|ADJ62195.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 98/321 (30%), Positives = 153/321 (47%), Gaps = 19/321 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
            A   L+ G  +A PTETVYGL  D+ NP AI  +Y  K RPA +P+I HVS  + +   
Sbjct: 18  HAARTLERGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEADIGYW 77

Query: 74  -ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
            ASV   +  L   FWPGPLTL+L   +   I         +   R P     + L+  +
Sbjct: 78  AASVPVEARRLIASFWPGPLTLILKRAAH--IPDAVAGGQDSVGVRCPAHPVAQALLREF 135

Query: 132 ---GHPLAIPSANRSGQISITNVKHILSS---SICKEIPLIIDGGISKIGLESTIVNVQ- 184
                 +A PSAN+ G +S T  +H+           +  ++DGG S++G+ESTIV++  
Sbjct: 136 RGGKGGIAGPSANKFGHVSPTTAEHVREEFGSDAGSLVDYVLDGGQSEVGIESTIVDLSR 195

Query: 185 -CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH- 242
                  +LRPG +  E ++  + V L     + S P++ G L +HYAP + V   A   
Sbjct: 196 IDTHGPVLLRPGQISAERIEAVLGVPL--ATPDASAPRASGTLDAHYAPHTPVVQVAPEE 253

Query: 243 ---VNPREALIRFGNVPIKNIEN-AIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
              V  + A +      I  ++   ++S+  +        A +L+  ++  D +GA  I 
Sbjct: 254 LATVLEKLAALGKKVALIARLQRSGLVSVTRAMPDTADAYAHDLYAALRDMDHTGADLIV 313

Query: 299 FSSIPNHGLGIAINNRLERAA 319
             ++P  G    +N+RL RAA
Sbjct: 314 VEALPLSGQWQGVNDRLRRAA 334


>gi|238061924|ref|ZP_04606633.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. ATCC 39149]
 gi|237883735|gb|EEP72563.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. ATCC 39149]
          Length = 321

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 115/318 (36%), Positives = 178/318 (55%), Gaps = 14/318 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A   L AG  +A PTETVYGL  ++ +  A  R++E K+RP+ +PLI H++D + 
Sbjct: 5   SGIAEAASVLRAGGLVAFPTETVYGLGANALDARAAARIFEAKQRPSFDPLITHLADAAD 64

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +      V      LA+ FWPGPLTL++D  +   I P+ T+ L+T   RVP     + L
Sbjct: 65  LTALVGPVPGAVAALAERFWPGPLTLIVDRPAA--IPPIVTSGLETMAVRVPDEASARAL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A PSANR GQ+S T  +H++ + +   + +++DGG ++ G+ESTIV+ +  +
Sbjct: 123 IAAAGVPVAAPSANRFGQLSPTRAEHVV-AGLGGAVDVVLDGGPTRCGIESTIVDARGGQ 181

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR-----AIH 242
            V +LR G L +E L+ A+   +      +  P +PG L +HYAPR+ +R+      A  
Sbjct: 182 PV-VLRLGALAVEALEEAVG-PVTVRPGSSGQPVAPGTLAAHYAPRTPLRVVGGAEPAAG 239

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
              R  L+ F   P+     A+    LS  G L  AA  LF+ +   D +G + I    +
Sbjct: 240 DGIRRGLLAFRERPVGGDWAAVEV--LSPGGDLTVAAARLFDALHRLDAAGVAEIVAERV 297

Query: 303 PNHGLGIAINNRLERAAA 320
           P+ G+G AIN+RL RAAA
Sbjct: 298 PDVGVGRAINDRLGRAAA 315


>gi|312797153|ref|YP_004030075.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI
           454]
 gi|312168928|emb|CBW75931.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI
           454]
          Length = 347

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 93/322 (28%), Positives = 148/322 (45%), Gaps = 25/322 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           LDAG  +A PTETVYGL  D+RNP A+ R+Y  K RPA +P+I H++           + 
Sbjct: 25  LDAGELVAFPTETVYGLGADARNPQAVARIYAAKGRPATHPVIVHLAPGDDPGGWVRTLG 84

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY----- 131
             +  L   FWPGPLTL+L       I    +    +   R P     + L+  +     
Sbjct: 85  SEARRLIDAFWPGPLTLILKRADA--IPDAVSGGQDSIGLRCPSHPVAQALLRAFSDLQH 142

Query: 132 -GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
               +A PSAN+ G +S T  +H+        +  ++DGG   +G+ESTI+++       
Sbjct: 143 GHGGVAAPSANKFGHVSPTTAQHV-RDEFGDSV-HVLDGGACDVGIESTIIDLSRGFPA- 199

Query: 191 ILRPGGLEIETLKRAISVELEYCVDETST-PQSPGMLKSHYAPRSQVRLRAIHV------ 243
           +LRPG +  + +   +  E        +T P++ G LK+HYAPR+ + L  +        
Sbjct: 200 LLRPGRITPQQIADVLGAEPRLPDGSDATVPRASGTLKAHYAPRTPLALLPLEAILCEVA 259

Query: 244 ----NPREALIRFGNVPIKNIENAIISLN-LSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
               + R A+I   ++P      A  +L  ++        A  L+  ++  D +    I 
Sbjct: 260 AHAPHERLAVIARADLPQAKALCARPNLQFVAAPEDPHVYARELYRMLRELDGANVLRIF 319

Query: 299 FSSIPNHGLGIAINNRLERAAA 320
              +P      A+N+RL RAAA
Sbjct: 320 IEPLPATAEWAAVNDRLRRAAA 341


>gi|253995512|ref|YP_003047576.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8]
 gi|253982191|gb|ACT47049.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8]
          Length = 323

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 93/325 (28%), Positives = 155/325 (47%), Gaps = 18/325 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +A   L  G  +AIPTETVYGLA D+ N +A+++++ IK+RPA +PLI H+  +S V
Sbjct: 4   SLEQAIAELKNGGVVAIPTETVYGLAADATNDSALKQIFAIKQRPADHPLIVHIGAMSQV 63

Query: 71  KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +  A+V   ++  LA  FWPGPLTLVL       +  +   +  T   RVP       L+
Sbjct: 64  QDWATVFPEVARDLASAFWPGPLTLVLPAQPH--VSRVVRGDEPTVALRVPNHPVALALL 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G  +A PSAN   Q+S T   H+  + +   I  ++DGG  ++G+ESTIV+V  + +
Sbjct: 122 TQGGLSVAAPSANLFTQLSPTTAAHV-EAGLGASI-SVLDGGACQVGIESTIVSVTADGQ 179

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETST-----PQSPGMLKSHYAPRSQVRL--RAI 241
            ++LRPG +  + +    +           +     P+ PG    HY+PR+ + L     
Sbjct: 180 WQLLRPGMISEQAIADVAARAASQPTQAVESVDAPVPKVPGQHALHYSPRTPLLLFKDRA 239

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSK----TGKLKEAAFNLFNYMKIADDSGASSI 297
            +     L++   +    +     ++            ++ A  L+  +   D      +
Sbjct: 240 ALLQECELLKQAALSSAAMLIGDGTVPSCPYVQLPNSPEKVAELLYGALHHLDAMKVDRL 299

Query: 298 AFSSIPNHGLGIAINNRLERAAAPR 322
                PN  + +A+ +RL RA   R
Sbjct: 300 LVELPPNLPIWMAVLDRLSRA-GYR 323


>gi|203284630|ref|YP_002222370.1| hypothetical protein BDU_738 [Borrelia duttonii Ly]
 gi|201084073|gb|ACH93664.1| uncharacterized conserved protein [Borrelia duttonii Ly]
          Length = 334

 Score =  268 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 105/333 (31%), Positives = 171/333 (51%), Gaps = 20/333 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   +   + + KA +F+++G  +  PTETVYG+  ++ +  AIR L+ +KKRP  NPL
Sbjct: 1   MKT-EVIKESEIEKAVKFINSGELVVFPTETVYGIGANAYDENAIRMLFIVKKRPITNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  I  +K+    +   ++ L K F PGP+T +L       I  L    L++   R+
Sbjct: 60  IVHVESIEKIKELVEYIPDSAMILMKKFTPGPITFILKNAGK--ISKLINGGLESIAVRI 117

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLE 177
           P      KLI+    P+A PSAN S + S TN +  +   +   +  II    +S+IG+E
Sbjct: 118 PSDPIALKLIKMSKVPIAAPSANLSKRPSATNFEMAIKE-LNGLVKGIIQKNEVSQIGIE 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST+++   +  V ILRPG +  E ++R ++ +  +EY + +    QSPG L  HY PR  
Sbjct: 177 STVISFDAKSNVSILRPGSITKEMIERELNGKFNVEYSLGKKILQQSPGNLLEHYRPRIP 236

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286
           V L     N R+ + R  +  I  ++N I S   +K            L+E A N++   
Sbjct: 237 VYLFRQKDNIRKYISR-QDTKILIMKNTIKSYWFNKLWNTNHICVFNTLEEYAKNIYKVF 295

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             ++ +    I    + N+ LG +INNRL++A+
Sbjct: 296 VESERTH-KQILAEFVDNNQLGYSINNRLKKAS 327


>gi|237653845|ref|YP_002890159.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T]
 gi|237625092|gb|ACR01782.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T]
          Length = 370

 Score =  268 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 99/338 (29%), Positives = 151/338 (44%), Gaps = 44/338 (13%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80
           G  + +PTETVYGLA D+ +P A+++++  K RPA +PLI H+  +  + + A+  P  +
Sbjct: 30  GELVGMPTETVYGLAADALDPEAVKKIFAAKGRPADHPLIVHLPSVEHLPQWAAAIPKDA 89

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
           L LA+ FWPGPLTL+L      D+    T    T   RVP       L+  +   LA PS
Sbjct: 90  LALARAFWPGPLTLILKRTP--DVPDEVTGGQDTVGVRVPAHPVALALLRAFDGGLAAPS 147

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           ANR G+IS T   H+    + + + +I+DGG   +G+ESTI++   +    ILRPG +  
Sbjct: 148 ANRFGRISPTTAAHV-HEELGERVAMILDGGACAVGIESTILDFSRDVP-EILRPGAITP 205

Query: 200 ETLKRAISVELEY---CVDETSTPQS----------------------------PGMLKS 228
           E + R I          V ET++ ++                             G L +
Sbjct: 206 EDIARVIGRRPRVPGESVAETASARAGQCGDASGLAEAAAPNAAADAAQPAPRVSGALAA 265

Query: 229 HYAPRSQVRLRA------IHVNPREALIRFGNVPIKNIENAIISLNL-SKTGKLKEAAFN 281
           HYAPR+ +RL                  R   +     +     L+  S        A  
Sbjct: 266 HYAPRTPLRLVEPALLADEAAALAGEGSRVAVLAHSTSDPRDARLSWRSLPADPAAYAQG 325

Query: 282 LFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           L+  ++  D  GA  I   ++P      A+ +RL RAA
Sbjct: 326 LYASLRALDGVGADLILIEALPGGPGWRAVADRLGRAA 363


>gi|224534462|ref|ZP_03675038.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia spielmanii A14S]
 gi|224514139|gb|EEF84457.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia spielmanii A14S]
          Length = 333

 Score =  268 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 165/331 (49%), Gaps = 17/331 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPLI HV
Sbjct: 5   EIISSNQIQKAAKLIKMGELVIFPTETVYGIGANAYNEDAVKMIFLVKKRPIENPLIVHV 64

Query: 65  SDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+P   
Sbjct: 65  DTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFISGNLDTVAIRIPANK 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180
               LI+    P+A PSAN S + S T+ +  L   +   +  II  +     IG+EST+
Sbjct: 123 IALNLIKASKVPIAAPSANISKRPSSTSFEMALKE-LNGLVRGIIKTENKDFNIGIESTV 181

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           +    +  V ILRPG +  + +++ +  +  + Y   +    +SPG +  HY P+  V L
Sbjct: 182 IGFDLKDNVLILRPGAITKKMIEKELKGKYTVNYAETKIELEKSPGNIIEHYKPKIPVYL 241

Query: 239 RAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYMKIADD 291
                N R  L +   + I    +++ + +      N+     L+E A NL+  + +  +
Sbjct: 242 FKSQDNIRRYLNKDTKILITKPTLKSYLFNFLWDKKNIKVFNTLEEYAQNLYKEL-VNSE 300

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           +    I    + + GLG +INNR+++A++ R
Sbjct: 301 NNYKQILSEFVKDEGLGYSINNRIKKASSNR 331


>gi|170733986|ref|YP_001765933.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3]
 gi|169817228|gb|ACA91811.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3]
          Length = 342

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 143/318 (44%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P   
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83

Query: 82  H-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
           H L + FWPGPLTL+L   +   I    +    +   R P     + +            
Sbjct: 84  HALIEAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGPSEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +  + +   +    +     + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPQQIADVLGRAPKLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +        +   A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 TDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|186475233|ref|YP_001856703.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815]
 gi|184191692|gb|ACC69657.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815]
          Length = 347

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 151/334 (45%), Gaps = 37/334 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ +  A   LDAG  +A PTETVYGL  D+ +P AI R+Y  K RP+ +P+I H++   
Sbjct: 16  ADEIAHAAAMLDAGQLVAFPTETVYGLGGDAESPDAIARIYAAKGRPSNHPVIVHLAPNG 75

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126
                 A +   +  L   FWPGPLTL+L   +   I    +    +   R P     + 
Sbjct: 76  DPNYWVAQLPSDAQRLIDAFWPGPLTLILKRAAH--IPAAVSGGQDSVGLRCPSHPVAQS 133

Query: 127 ------LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  +      +A PSANR G +S T  +H+        I  ++DGG S +G+ESTI
Sbjct: 134 LLTAFSALRNGHGGVAAPSANRFGHVSPTTAQHV-REEFGDAI-HVLDGGPSDVGIESTI 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAPRSQVRL 238
           V++       +LRPG +  + +   +  E+    D  + S P++ G LK+HYAPR+ + L
Sbjct: 192 VDLSRGFPA-LLRPGHVTPQDIADVLG-EMPRLPDGSDASAPRASGTLKAHYAPRTPLAL 249

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA---------------AFNLF 283
               V       R         E   +    S+ G+  EA               A +L+
Sbjct: 250 LPFDVLEPLLAAR------APGERVALVARASRAGRWAEAQGVHFVAAPEDPHLYARDLY 303

Query: 284 NYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
             ++  D +  S I    +P+    IA+N+RL R
Sbjct: 304 GLLRALDRANVSRILIEKLPDTIEWIAVNDRLGR 337


>gi|203288164|ref|YP_002223179.1| hypothetical protein BRE_741 [Borrelia recurrentis A1]
 gi|201085384|gb|ACH94958.1| uncharacterized conserved protein [Borrelia recurrentis A1]
          Length = 334

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 104/333 (31%), Positives = 171/333 (51%), Gaps = 20/333 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   +   + + KA +F+++G  +  PTETVYG+  ++ +  AIR L+ +KKRP  NPL
Sbjct: 1   MKT-EVIKESEIEKAVKFINSGELVVFPTETVYGIGANAYDENAIRMLFIVKKRPITNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  I  +K+    +   ++ L K F PGP+T +L       I  L    L++   R+
Sbjct: 60  IVHVESIEKIKELVEYIPDSAMILMKKFTPGPITFILKNAGK--ISKLINGGLESIAVRI 117

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLE 177
           P      KLI+    P+A PSAN S + S TN +  +   +   +  II    +S+IG+E
Sbjct: 118 PSDPIALKLIKMSKVPIAAPSANLSKRPSATNFEMAIKE-LNGLVKGIIQKNEVSQIGIE 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST+++   +  V ILRPG +  E ++R ++ +  +EY + +    QSPG L  HY PR  
Sbjct: 177 STVISFDAKSNVSILRPGSITKEMIERELNGKFNVEYSLGKKILQQSPGNLLEHYRPRIP 236

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286
           V L     N R+ + +  +  I  ++N I S   +K            L+E A N++   
Sbjct: 237 VYLFRQKDNIRKYISQ-QDTKILIMKNTIKSYWFNKLWNTNHICVFNTLEEYAKNIYKVF 295

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
             ++ +    I    + N+ LG +INNRL++A+
Sbjct: 296 VESERTH-KQILAEFVDNNQLGYSINNRLKKAS 327


>gi|224532051|ref|ZP_03672683.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia valaisiana VS116]
 gi|224511516|gb|EEF81922.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia valaisiana VS116]
          Length = 335

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MISTEIIRSNQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLNTVAIRI 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIG 175
           P       LI+    P+  PSAN S + S TN +  L   +   +  II   +     IG
Sbjct: 119 PANKIALNLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVGGIIKTTENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST--PQSPGMLKSHYAPR 233
           +EST++    +  V ILRPG +  + +++ +  +      ET+    +SPG +  HY P+
Sbjct: 178 IESTVIGFDLKDNVLILRPGAITKKMIEKELQGQYTVSYAETTIELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKN--IENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKSTLKSYLFNFLWDKKNITIFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+ +A++ R
Sbjct: 298 -VNSENNYKKILSEFVKDEELGYSINNRIRKASSNR 332


>gi|297170862|gb|ADI21881.1| putative translation factor (SUA5) [uncultured verrucomicrobium
           HF0130_25O04]
          Length = 325

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 103/318 (32%), Positives = 160/318 (50%), Gaps = 18/318 (5%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L  G  +A+PTETVYGLA  + +  A+++++E+K+RP  NPLI HV D    ++ A V
Sbjct: 11  DTLLGGEVVALPTETVYGLACLALDEKAVKKVFELKERPPTNPLIVHVLDSRQAEQIAHV 70

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           +  +  L + FWPGPLTL+L       I    TA L T   R P     +K+++    P+
Sbjct: 71  NSFAKLLCQKFWPGPLTLILP--KRQMIPDSVTAGLDTVAVRSPSHPLFRKILQEAEQPI 128

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSAN    +S T  + +   S  +  P I+DGG   IGLEST++++  +    ILRPG
Sbjct: 129 AAPSANLFSMVSSTTPQEVF-DSFGEACPPILDGGKCNIGLESTVLDLTSDTP-SILRPG 186

Query: 196 GLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLR----AIHVNPREA 248
            +  E L+  +  E+   +   D     +SPG+   HY+  + +RL     AI    R  
Sbjct: 187 PISKEELEEFLGFEISNPKKNTDSRVARKSPGLSAKHYSTETPIRLHENISAIQQIERWT 246

Query: 249 LIRFGNVPIKNI-----ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIP 303
                 +P K++           +  S TG  ++ A NL+  +K AD      I  + + 
Sbjct: 247 ADDLIILPCKDLIVGFDSEPATIITFSATGNTQDIAHNLYATLKEADQLEKKLIHLALLE 306

Query: 304 NH-GLGIAINNRLERAAA 320
              GL  A+N+RL RA++
Sbjct: 307 ETDGLARAVNDRLTRASS 324


>gi|294339381|emb|CAZ87737.1| putative Translation factor, SUA5 type [Thiomonas sp. 3As]
          Length = 334

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 17/322 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L+AG  + +PTETVYGLA D+ N  A+ R+Y  K RPA +P+I H+   +
Sbjct: 12  PREIIEAVRRLEAGELVGLPTETVYGLAADAENVQAVARIYAAKGRPADHPVIVHIHRAA 71

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +   A  V   +  LA  FWPGPLTL+L       +         T   R P     + 
Sbjct: 72  DLGHWASEVPETARKLAAAFWPGPLTLILPRKPG--VADACAGGQNTIGLRCPSHPVAQA 129

Query: 128 IET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +          LA PSANR G+IS T   H+  + +  ++ L++DGG   +G+ESTIV+ 
Sbjct: 130 VLAIFKGGQGGLAAPSANRFGRISPTTAAHV-HAELGDDL-LVLDGGACAVGIESTIVDC 187

Query: 184 QCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQV------ 236
              +  RILRPG L+   + + + V E +      S P+  G+L +HYAPR+ +      
Sbjct: 188 T-AQPPRILRPGQLQAADIAQTLGVAEADLLRPAESAPRVAGVLPAHYAPRTPLQWCSRE 246

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
           ++ A       A  R G +       A     ++        A  L+  ++  D +G   
Sbjct: 247 QINARWEIGTSAGRRIGVLAFPPQPLAPHPSWVTLPADPAAYAQQLYAVLRRLDAAGLEE 306

Query: 297 IAFSSIPNHGLGIAINNRLERA 318
           I    +P     +A+ +RL RA
Sbjct: 307 ICVEVLPPSPAWLALRDRLTRA 328


>gi|242765157|ref|XP_002340917.1| translation initiation protein Sua5 [Talaromyces stipitatus ATCC
           10500]
 gi|218724113|gb|EED23530.1| translation initiation protein Sua5 [Talaromyces stipitatus ATCC
           10500]
          Length = 423

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 145/371 (39%), Gaps = 84/371 (22%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH---------A 74
           P+  PTETVYGL  D+    +++ +Y+ K+RP+ NPLI HV  I MV +           
Sbjct: 56  PVGFPTETVYGLGADATRSGSVQGIYKAKQRPSDNPLIVHVDSIEMVNRLLNPNGGSPTT 115

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
            +  +   L   FWPG LT++L     + +    TANL T   R+P   F + LI     
Sbjct: 116 KIPAIYEPLISRFWPGALTILLPNPKGSLLAKEVTANLPTFGVRMPSSAFARLLIHVTDR 175

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PLA PSAN S + S T  +H+           + +GG   +G+EST+V+        +LR
Sbjct: 176 PLAAPSANASTKPSPTTAEHVYHD--------LQNGGPCGVGVESTVVDGLTNPPA-VLR 226

Query: 194 PGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
           PGG+ IE ++     E       +  +     P+SPGM   HY+P+++V L     +   
Sbjct: 227 PGGIGIEEIRTCPGWENVQVGYNDSALQGKEAPRSPGMKYRHYSPKARVVLFEAGSDLAS 286

Query: 248 ALIRFG--------------------NVPIKNIENAIISLNLSKT--------------- 272
              R                       + I   +   I+L+LS                 
Sbjct: 287 VADRVKKDLIGGGGSSNGNANGFSGRKIGIVRTKTWPIALSLSDAETKQTTQASNDGDTL 346

Query: 273 ----------------------GKLKEAAFNLFNYMKIADDSGASSIAFSSI--PNHGLG 308
                                    +  A  LF  ++  D     +I    I      L 
Sbjct: 347 SIHQISVPLGDSSTTVYDVHLGASAESIARGLFATLRSLDAENVDAIYIEGIRDDEGDLA 406

Query: 309 IAINNRLERAA 319
            A+ NRL +AA
Sbjct: 407 AAVMNRLRKAA 417


>gi|222152013|ref|YP_002561173.1| hypothetical protein MCCL_1770 [Macrococcus caseolyticus JCSC5402]
 gi|222121142|dbj|BAH18477.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 334

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 142/305 (46%), Gaps = 9/305 (2%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDP 78
            AG  IAIPTETVYGLA D+ N  A+  +++ K RP  NPLI H+  +S ++     +  
Sbjct: 29  KAGETIAIPTETVYGLAADATNREAVAAIFKAKGRPQDNPLIVHIHHLSQLEWFTHDIHA 88

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
            +  L   FWPGP++ ++ +     +    TA L T   R+P      +LIE     LA 
Sbjct: 89  AAYKLMDYFWPGPISFIVPVKQGI-LAESVTAGLNTVAVRMPAHKVAHQLIEMTDLLLAA 147

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           PSAN SG+ S T  +H++   +  +I  I+     ++G+EST+V+   +   RI RPG +
Sbjct: 148 PSANTSGKPSPTKAEHVI-HDMEGKIFGIVQSEQVEVGIESTVVDC-SQYPFRIARPGAI 205

Query: 198 EIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPI 257
               L+  +   +         P +PGM   HYAP S + L     +   A       P+
Sbjct: 206 THNDLEMVVPGCISDERIMGDKPIAPGMKYRHYAPDSPLELVEHFESLELAANEAVIAPL 265

Query: 258 KNIE--NAIISLNLSKT-GKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGLGIAINN 313
                 N      L  T      A ++L++ ++ AD   G   I  +   ++    A+ N
Sbjct: 266 SEKHKVNGGWFFKLGTTYEDSGGAMYDLYDALRSADSIEGIEKIYITDFTSYNGSDALMN 325

Query: 314 RLERA 318
           R+ +A
Sbjct: 326 RINKA 330


>gi|291532654|emb|CBL05767.1| translation factor SUA5 [Megamonas hypermegale ART12/1]
          Length = 271

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 129/252 (51%), Gaps = 8/252 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++  D  AL++A + +  G  +A PTETVYGL  D  N  A + +Y  K RP+ NPLI H
Sbjct: 8   INSIDDEALKRAGQCIKDGGLVAFPTETVYGLGGDGLNEVASKNIYLAKGRPSDNPLILH 67

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           ++D  M+ +    V P++  +   F PGP+T++L    +  +    T  L T   R+P  
Sbjct: 68  INDQKMLGRIVSEVTPMAKKIMTAFCPGPITIILP--KSNIVPKAVTGGLDTIAVRMPDN 125

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + LI+    P+A PSAN SG+ S T  + +    +   I +++DGG  + G+ESTIV
Sbjct: 126 DIARALIKYADTPIAAPSANISGRPSPTTAQAVYKD-LQSRIDMVLDGGACQFGVESTIV 184

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +   +  + ILRPG +  E L+    V    +  V     P++PGM   HYAP+  + L 
Sbjct: 185 DCTEDVPI-ILRPGAITKEMLEEIFPVVKIDKAIVGANVVPKAPGMKYKHYAPKVDMILI 243

Query: 240 AIHVNPREALIR 251
                   + I+
Sbjct: 244 EGDNEKMSSSIK 255


>gi|73540259|ref|YP_294779.1| translation factor SUA5 [Ralstonia eutropha JMP134]
 gi|72117672|gb|AAZ59935.1| translation factor SUA5 [Ralstonia eutropha JMP134]
          Length = 328

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 18/330 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  +  +  L +A   L+AG  +A PTETVYGL  D+ +P A+ R++ +K RP+ +P+I 
Sbjct: 1   MSRMPTAAELDEAVRLLEAGQLVAFPTETVYGLGADAESPEAVARIFALKGRPSNHPVIV 60

Query: 63  HVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV D + +       P +   L + FWPGPLTL+L   S   IH        +   R P 
Sbjct: 61  HVVDGADIGYWVDEVPEAATKLIEAFWPGPLTLILKRASH--IHAAVAGGQDSIGLRCPS 118

Query: 122 GFTKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
               + +    +     +A PSAN+ GQ+S T  +H+       +   +++G   ++G+E
Sbjct: 119 HPVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVYVLEGDGVEVGIE 176

Query: 178 STIVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
           STIV++    +     +LRPG +    + + +                 G LK+HYAP +
Sbjct: 177 STIVDLSRLDQGIGPVLLRPGAITPAMMAKVLGEAPLPPDAAAPRA--SGTLKAHYAPHT 234

Query: 235 QVRLRAIHVNPREALIRFGNVPIKNIENAII----SLNLSKTGKLKEAAFNLFNYMKIAD 290
            + L        +      +  +  +  A I       +         A  L+  ++  D
Sbjct: 235 PLVLADAAELAAQLPSLAADARVAWVGRAPIEDPRCTWVQAPADATAYARELYRLLRKLD 294

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G + + F  +P       + +RL+RAAA
Sbjct: 295 KQGFTQLVFEPLPEGHEWAGVRDRLQRAAA 324


>gi|270158487|ref|ZP_06187144.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968]
 gi|289166681|ref|YP_003456819.1| translation initiation protein [Legionella longbeachae NSW150]
 gi|269990512|gb|EEZ96766.1| Sua5/YciO/YrdC family protein [Legionella longbeachae D-4968]
 gi|288859854|emb|CBJ13840.1| putative translation initiation protein [Legionella longbeachae
           NSW150]
          Length = 321

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/323 (30%), Positives = 152/323 (47%), Gaps = 19/323 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L  G P+AIPTETVYGLA    N  AI+ ++ IK RP  +PLI HV++  
Sbjct: 5   TTNIDRAIHDLQQGKPVAIPTETVYGLAAPINNEQAIKAVFAIKNRPLNHPLIIHVAENW 64

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +       P  +  L K FWPGPLTLV        I PL T    T   R P     ++
Sbjct: 65  ALDLLVKDIPAYAQQLIKKFWPGPLTLVF-HCKQDQISPLITGGQTTVAIRCPAHPIAQE 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G PL  PSAN  G++S T  +H+ S S   +   I+DGG   +G+ESTI++    
Sbjct: 124 LLKKLGVPLVAPSANPFGKVSPTTAEHV-SESFYNQELTILDGGRCTVGIESTIIDATDP 182

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
           +  +ILR G ++ + +   I++     +   ++ + PG L SHY P+ ++     + +  
Sbjct: 183 QNYQILRHGIIDEKAIAELIALP---SLRGENSLRVPGKLDSHYQPQKKLY----YFDSY 235

Query: 247 EALIRFGNVPIKNIENAIISLNLSKT--------GKLKEAAFNLFNYMKIADDSGASSIA 298
             L  F      NI        +              ++ AF+L+  ++ AD S A  I 
Sbjct: 236 NLLTHFCQKNGDNIYVIASKKPMGMREEYFHLLEDNPEKVAFDLYYQLRKADASNAEVIV 295

Query: 299 FSSIPNHGLGIAINNRLERAAAP 321
               P  G    +  R+ +A AP
Sbjct: 296 IELPPATGAWQGVRERILKAGAP 318


>gi|71906092|ref|YP_283679.1| translation factor SUA5 [Dechloromonas aromatica RCB]
 gi|71845713|gb|AAZ45209.1| translation factor SUA5 [Dechloromonas aromatica RCB]
          Length = 331

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 103/341 (30%), Positives = 165/341 (48%), Gaps = 29/341 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS T+++  ++A E L AG  +A+PTETVYGL  D+ NP A+ +++  K RPA +PLI H
Sbjct: 1   MSPTEAD-YQRAVELLRAGELVAMPTETVYGLGADAANPAAVAKIFAAKGRPADHPLIVH 59

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           +S    V + A  V  ++  L + FWPGPLT++L   +   +    T    T   RVP  
Sbjct: 60  LSGHDAVDRWAEQVPAVAWELMEAFWPGPLTVILKKQAW--VPDAVTGGQDTVGLRVPGH 117

Query: 122 GFTKKLIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
               +L+  +         +A PSANR G+IS T   H+ +  +   + +I+DGG   +G
Sbjct: 118 PVALELLRRFAAATGEHAGIAAPSANRFGRISPTTAAHV-AEELGDAVSMILDGGPCAVG 176

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +ESTIV+    + V +LRPG +    L+  +             P+  G L++HYAP + 
Sbjct: 177 IESTIVDCSRGEPV-VLRPGHISPLHLEAILGRRPAIET-AVGAPRVSGSLEAHYAPVTP 234

Query: 236 VRLRAI-----------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
           +R+ A            H   + A+I     P   + +A   +     G     A +++ 
Sbjct: 235 LRMVAGERLLDFINAQRHRGGKCAVISANQPPQAGMPHAWRLMPADPVG----YAHDIYA 290

Query: 285 YMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
            ++  D +G   I   +IP      A+ +RL RA A   Q+
Sbjct: 291 ALRDMDHAGVDLIVVEAIPEDSAWAAVADRLRRAVAGAGQA 331


>gi|254247338|ref|ZP_04940659.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia PC184]
 gi|124872114|gb|EAY63830.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia PC184]
          Length = 342

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 142/318 (44%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P   
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83

Query: 82  H-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
           H L   FWPGPLTL+L   +   I    +    +   R P     + +            
Sbjct: 84  HALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +  + +   +    +     + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPQQIADVLGRAPKLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +        +   A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 TDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|312147861|gb|ADQ30520.1| Sua5/YciO/YrdC/YwlC family protein, putative [Borrelia burgdorferi
           JD1]
          Length = 337

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 164/336 (48%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+  PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST+V    +  V ILRPG +  + ++  +  +  + Y   +    +SPG    HY P+
Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNTIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|315123100|ref|YP_004065106.1| putative translation factor [Pseudoalteromonas sp. SM9913]
 gi|315016860|gb|ADT70197.1| putative translation factor [Pseudoalteromonas sp. SM9913]
          Length = 335

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/323 (29%), Positives = 154/323 (47%), Gaps = 19/323 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L AG  +A+PTETVYGLA D+ N  A+ +++  K RP  +PLI H+ ++S
Sbjct: 13  EERINQAVALLKAGECVALPTETVYGLAADASNSDAVAKIFAAKGRPTNHPLIVHIPELS 72

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
            V   A  V+  ++ LA+ FWPGPLTL+L+     +     T  L +   RVP       
Sbjct: 73  HVHHWAKNVNKAAITLAEAFWPGPLTLILNAKDNLNSP--VTGGLNSIGLRVPAHPQFLA 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +++     LA PSANR  Q+S  N  H++   +   I  +++GG   +G+ESTIV+   E
Sbjct: 131 VLKQLNTGLAAPSANRYKQLSPINTAHVMRD-LNGRISAVLEGGQCDVGIESTIVDATTE 189

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNP- 245
           + +RILRPG +    + +   + +   +        PG +K+HY P +   L      P 
Sbjct: 190 Q-LRILRPGPISAADILQKTGLNVTTPLSHNEAV--PGNVKAHYQPHAPAILINSADFPS 246

Query: 246 ----REALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYMKIADDSGAS 295
                  L     +     E  +++ ++S       +    E A N++  +   D++   
Sbjct: 247 VLSNTPHLQTHYLIYSTKAEQQLLANHISPQYITKLSACPVEYAKNMYKTLHHIDETTPM 306

Query: 296 SIAFSSIPNHGLGIAINNRLERA 318
           +I     P      A+N+RL RA
Sbjct: 307 NIYIEKPPVSSKWGAVNDRLSRA 329


>gi|159045624|ref|YP_001534418.1| Sua5/YciO/YrdC/YwlC family protein [Dinoroseobacter shibae DFL 12]
 gi|157913384|gb|ABV94817.1| Sua5/YciO/YrdC/YwlC family protein [Dinoroseobacter shibae DFL 12]
          Length = 325

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 156/296 (52%), Gaps = 21/296 (7%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +A PTETVYGL  D+R+  A+  ++  K RP+ NPLI HV D++   +   + P  L LA
Sbjct: 30  VAFPTETVYGLGGDARSDRAVAGIFAAKGRPSFNPLIVHVPDLAAAGRLVDLPPAGLALA 89

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
           + FWPG LTLV  + +   I PL TA L+T   RVP     + L+  +  P+A PSAN S
Sbjct: 90  EAFWPGALTLVAPMRAEAGISPLVTAGLETLAVRVPAHSAAQALLRGFDGPVAAPSANPS 149

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G +S T   H+L   +  +I  ++DGG   +GLESTIV++  E  + +LRPGG+  E L 
Sbjct: 150 GGVSPTTAAHVL-DGLDGKIAAVLDGGACPVGLESTIVSLAGETPM-LLRPGGVTAEALA 207

Query: 204 RAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENA 263
           + +   +       + P +PG L SHYAP + VRL A      E  + FG        + 
Sbjct: 208 QVLGAPIAEGAGSATQPTAPGQLASHYAPDAPVRLNATARQDGEVWLGFGP-------DC 260

Query: 264 IISLNLSKTGK------LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINN 313
              ++LS++G+         AA    + +     +    IA + +P  GLG AIN+
Sbjct: 261 PGDMSLSESGELAEAAARLFAALRAMDAL-----AEGRRIAVAPVPQTGLGAAIND 311


>gi|296157275|ref|ZP_06840111.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1]
 gi|295892611|gb|EFG72393.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1]
          Length = 346

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 146/327 (44%), Gaps = 23/327 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   LDAG  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H++   
Sbjct: 16  AAQIEHAAALLDAGELVAFPTETVYGLGGDAENPDAVARIYAAKGRPANHPVIVHLAPQG 75

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                   +   +  L   FWPGPLTL+L   +   I    +    +   R P     + 
Sbjct: 76  DPNYWVEYLPAEAQRLIDAFWPGPLTLILKRAA--RIPAAVSGGQDSVGLRCPSHPVAQA 133

Query: 127 LIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+E +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 134 LLEAFSALRSGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDTIHVLDGGASDVGIESTI 191

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV--- 236
           +++       +LRPG +  + +   +          + + P++ G LK+HYAPR+ +   
Sbjct: 192 LDLSRGFPA-LLRPGRVTPQDIADVLGEAPRLPDGSDATAPRASGTLKAHYAPRTPLALL 250

Query: 237 ------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
                  L A         +        +  +A     ++        A  L+  +++ D
Sbjct: 251 PFGALETLLAARQADERVALVARASRAGHWADAEGVHFIAAPEDPHVYARELYGLLRVLD 310

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLER 317
            +  S I    +P+    IA+N+RL R
Sbjct: 311 HANVSRILIEKLPDTIEWIAVNDRLGR 337


>gi|223889416|ref|ZP_03624002.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 64b]
 gi|224532614|ref|ZP_03673236.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23]
 gi|224533276|ref|ZP_03673870.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi CA-11.2a]
 gi|223885102|gb|EEF56206.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 64b]
 gi|224512470|gb|EEF82849.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23]
 gi|224513441|gb|EEF83798.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi CA-11.2a]
 gi|312149111|gb|ADQ29182.1| Sua5/YciO/YrdC/YwlC family protein, putative [Borrelia burgdorferi
           N40]
          Length = 337

 Score =  266 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+  PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST+V    +  V ILRPG +  + ++  +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|15595079|ref|NP_212868.1| hypothetical protein BB0734 [Borrelia burgdorferi B31]
 gi|218249379|ref|YP_002375233.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           ZS7]
 gi|225548887|ref|ZP_03769864.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 94a]
 gi|226321432|ref|ZP_03796959.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi Bol26]
 gi|2688669|gb|AAC67081.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|218164567|gb|ACK74628.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           ZS7]
 gi|225370490|gb|EEG99926.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 94a]
 gi|226233228|gb|EEH31980.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi Bol26]
          Length = 337

 Score =  266 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+  PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST+V    +  V ILRPG +  + ++  +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNITVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|115352720|ref|YP_774559.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD]
 gi|115282708|gb|ABI88225.1| translation factor SUA5 [Burkholderia ambifaria AMMD]
          Length = 342

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 140/318 (44%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P  +
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
             L   FWPGPLTL+L   +   I    +    +   R P     + +            
Sbjct: 84  QALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRLR----------AIH 242
           PG +  + +   +          + + P++ G LK+HYAPR+ + L           A  
Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGGDATAPRASGTLKAHYAPRTPLSLMPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +            A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 TDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|107023558|ref|YP_621885.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054]
 gi|116690642|ref|YP_836265.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia
           HI2424]
 gi|105893747|gb|ABF76912.1| translation factor SUA5 [Burkholderia cenocepacia AU 1054]
 gi|116648731|gb|ABK09372.1| translation factor SUA5 [Burkholderia cenocepacia HI2424]
          Length = 342

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 143/318 (44%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P   
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83

Query: 82  H-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
           H L + FWPGPLTL+L   +   I    +    +   R P     + +            
Sbjct: 84  HALIEAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +  + +   +    +     + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPQQIADVLGRAPKLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +        +   A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 TDGERVALVARASRAGHWAQADGVHFIAAPEDPQAYARDLYGMLRALDRAQVARILIEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|195941552|ref|ZP_03086934.1| hypothetical protein Bbur8_01541 [Borrelia burgdorferi 80a]
          Length = 337

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALILIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+  PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST+V    +  V ILRPG +  + ++  +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWNKKNIAVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|238028508|ref|YP_002912739.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1]
 gi|237877702|gb|ACR30035.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1]
          Length = 359

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 141/328 (42%), Gaps = 24/328 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L AG  +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H+       
Sbjct: 27  IDEAAARLAAGELVAFPTETVYGLGGDAESPQAVARIYAAKGRPANHPVIVHLPPGGDPG 86

Query: 72  KHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128
                 P  +  L + FWPGPLTL+L   +   I    +    +   R P     + +  
Sbjct: 87  YWVPALPADARRLIEAFWPGPLTLILKRAAH--IPDAVSGGQDSVGLRCPSHPVAQALLA 144

Query: 129 -----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
                      +A PSANR G +S T  +H+       +   ++DGG +++G+ESTI+++
Sbjct: 145 AFSARRAGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGAAEVGIESTILDL 202

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQVRL---- 238
                  +LRPG +  + +   +          +   P++ G LK+HYAPR+ + L    
Sbjct: 203 SRGFPA-LLRPGHVTPQQIAEVLGTLPRLPDGGDPGAPRASGTLKAHYAPRTPLVLLPFG 261

Query: 239 ------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
                  A         +            A     ++     +  A  L+  ++  D +
Sbjct: 262 RLAPLLEAAAAAGEPVALVARASSAGAWAAAPGVHFVAAPEDPQAYARELYGLLRALDRA 321

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
             + I    +P      A+N+RL RAAA
Sbjct: 322 SVTRILVEQLPGTPEWAAVNDRLGRAAA 349


>gi|225551793|ref|ZP_03772736.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia sp. SV1]
 gi|225371588|gb|EEH01015.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia sp. SV1]
          Length = 337

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    PL  PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKTALSLIKASKVPLVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST+V    +  V ILRPG +  + ++  +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKIELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|78067422|ref|YP_370191.1| translation factor SUA5 [Burkholderia sp. 383]
 gi|77968167|gb|ABB09547.1| translation factor SUA5 [Burkholderia sp. 383]
          Length = 342

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 140/318 (44%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P  +
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
             L   FWPGPLTL+L   +   I    +    +   R P     + +            
Sbjct: 84  QALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +  + +   +          + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +            A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 TDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|269860590|ref|XP_002650015.1| hypothetical protein EBI_24439 [Enterocytozoon bieneusi H348]
 gi|220066566|gb|EED44043.1| hypothetical protein EBI_24439 [Enterocytozoon bieneusi H348]
          Length = 334

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 100/314 (31%), Positives = 160/314 (50%), Gaps = 26/314 (8%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPLSL 81
           P+ IPTETVYGLA    N   +  +Y+IK RP+ NPLI H+S+++M+K      + P   
Sbjct: 24  PVVIPTETVYGLAGVINNDNILSNIYQIKGRPSDNPLIVHISNLNMLKSLIKETILPEYA 83

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVPCG-FTKKLIETYGHPLAIPS 139
            L K +WPGPLTL+    +  ++  +   N   T   R+P      KLI+  G PLA PS
Sbjct: 84  VLIKKYWPGPLTLIF--KANDNVSNIVKGNHMDTIAIRMPNNSKLLKLIDKLGIPLAAPS 141

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SGQ S T + H+L+  +  ++   ID G    GLESTI+++Q  K + ILRPG +  
Sbjct: 142 ANTSGQPSPTEINHVLND-LGNKVETYIDDGKCLYGLESTILSMQNNK-ITILRPGIITK 199

Query: 200 ETLKRAISVELEYCVDETSTPQS-PGMLKSHYAPRSQVRLRAIHV-------------NP 245
           E +++ +  +++     ++   + PGM  +HY+P+  V L                  N 
Sbjct: 200 EEIEKCLQKQVDLYTKISNINYTIPGMKYTHYSPKIDVYLFIGKDYNINMIKKAQHFKNK 259

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           +  ++   ++ +   +   I   + KT  LKE A N F+ ++   +     I     P  
Sbjct: 260 KIGIMGSNDIIVHGFKYEEI-FYMGKT--LKECASNCFSGLRHF-EKKVDLIFIKGFPCI 315

Query: 306 GLGIAINNRLERAA 319
             G+A+ +RLE+A+
Sbjct: 316 DEGVALMDRLEKAS 329


>gi|226321225|ref|ZP_03796758.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 29805]
 gi|226233354|gb|EEH32102.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 29805]
          Length = 337

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+  PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKPEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST+V    +  V ILRPG +  + ++  +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVVGFDLKDNVLILRPGTITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|216264566|ref|ZP_03436558.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           156a]
 gi|221217952|ref|ZP_03589419.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 72a]
 gi|225550010|ref|ZP_03770971.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 118a]
 gi|215981039|gb|EEC21846.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           156a]
 gi|221192258|gb|EEE18478.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 72a]
 gi|225369469|gb|EEG98921.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi 118a]
          Length = 337

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 18/336 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  S+ ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKRP  NPL
Sbjct: 1   MISTEIISSSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRPINNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKKFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+  PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKTALSLIKASKVPIVAPSANISKRPSSTNFEMALKE-LNGLVRGIIKTEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST+V    +  V ILRPG +  + ++  +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVVGFDLKDNVLILRPGAITKKMIENELQGKYTVNYAETKMELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI--KNIENAIISL-----NLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I    +++ + +      N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKATLKSYLFNFFWDKKNITVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
            +  ++    I    + +  LG +INNR+++A++ R
Sbjct: 298 -VNSENNYKQILSEFLKDEELGHSINNRIKKASSNR 332


>gi|297620333|ref|YP_003708470.1| Sua5/YciO/YrdC/YwlC family protein [Waddlia chondrophila WSU
           86-1044]
 gi|297375634|gb|ADI37464.1| Sua5/YciO/YrdC/YwlC family protein [Waddlia chondrophila WSU
           86-1044]
          Length = 307

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 151/309 (48%), Gaps = 12/309 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R+A   L +G  +A+PTETVYGLA   + P AI++++ +K RP+ NPLI HV  I  +  
Sbjct: 6   RQAIRMLLSGEVVALPTETVYGLAASLKFPEAIKKIFSLKGRPSDNPLIVHVGKIEQLSS 65

Query: 73  HA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           +  +  P    LA+ FWPG LTL++D  +   +     A L T   R+P     + +   
Sbjct: 66  YVTTFPPGFESLAEAFWPGALTLIID-ANKEMVPEAVRAGLSTVAVRIPSHAKTRQVLEE 124

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
              L +PSAN SG+ S T  +H++     ++   ++DGG  + G+ESTI+  + + +  I
Sbjct: 125 TGALVMPSANLSGRPSATTAQHVIDDF--QDAAPVLDGGKCQQGVESTIMIFR-DTRWVI 181

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
            R G +  E +   +    ++  + T+ P  PG    HYAP +   L+ +  +    +I 
Sbjct: 182 AREGAVTAEEIALVLGYAPDFS-ERTAKPICPGQHYKHYAPNA--VLKPLGKDQTGVVIG 238

Query: 252 FGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS-IPNHGLGIA 310
           F +   +   ++     L    + +  A NL++ ++  D  G          PN GL   
Sbjct: 239 FSD---RKYPHSTALYILGDLSEPEIVAGNLYSVLRALDTDGVQEAFIDWDFPNEGLWRT 295

Query: 311 INNRLERAA 319
           I  RL +A+
Sbjct: 296 IRERLRKAS 304


>gi|257439052|ref|ZP_05614807.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257198542|gb|EEU96826.1| Sua5/YciO/YrdC/YwlC family protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 302

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 148/304 (48%), Gaps = 27/304 (8%)

Query: 1   MQI-MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M+  +   +  A+ KA + L  G  +A+PTETVYG+A D+RN  A+ +++  K RP  NP
Sbjct: 6   MKTEILPAEGEAIAKAADLLRRGELVALPTETVYGIAADARNGAAVAKIFVAKGRPQDNP 65

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           LI HV+   M+      V   +  L   F PGPLT+++      ++     A L T   R
Sbjct: 66  LIVHVTGPEMLPGLVSEVPERAQLLMAAFCPGPLTIIMPRGP--EVAAECCAGLDTVGIR 123

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P     + +I   G   A PSAN SG+ S TN + + +  +   +PLI+DGG   +G+E
Sbjct: 124 MPSHPVARAVIAQSGCAFAAPSANLSGKPSPTNAQDVFTD-MDGRLPLILDGGECDVGVE 182

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC------VDETSTPQSPGMLKSHYA 231
           ST+++V  EK   + RPG + +E L+RA+  E+E        + E +  +SPGM   HYA
Sbjct: 183 STVISVVGEKP-TLFRPGHITLEDLERALGEEVEVSKAILEKLPEGAVVRSPGMKYKHYA 241

Query: 232 PRSQVRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280
           P++ V L              H +   + + F     K        +   + G   + A 
Sbjct: 242 PKADVTLLDGTFEQFKAYVDAHADQNPSCLCFTGEAEKL---GWPCVEYGREGDGADQAK 298

Query: 281 NLFN 284
           ++F 
Sbjct: 299 HIFR 302


>gi|172061583|ref|YP_001809235.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6]
 gi|171994100|gb|ACB65019.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6]
          Length = 342

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 139/318 (43%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P  +
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
             L   FWPGPLTL+L   +   I    +    +   R P     + +            
Sbjct: 84  QALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +    +   +          + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPRQIADVLGRAPRLPDGGDATAPRASGTLKAHYAPRTPLSLLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +            A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 TDGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|206561172|ref|YP_002231937.1| hypothetical protein BCAL2835 [Burkholderia cenocepacia J2315]
 gi|198037214|emb|CAR53135.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 342

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 88/318 (27%), Positives = 141/318 (44%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+         A   P   
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWADDLPADA 83

Query: 82  H-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
           H L   FWPGPLTL+L   +   I    +    +   R P     + +            
Sbjct: 84  HALIDAFWPGPLTLILKRHA--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +  + +   +    +     + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPQQIADVLGRAPKLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +            A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 TDGERIALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|146307051|ref|YP_001187516.1| translation factor SUA5 [Pseudomonas mendocina ymp]
 gi|145575252|gb|ABP84784.1| translation factor SUA5 [Pseudomonas mendocina ymp]
          Length = 339

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/319 (31%), Positives = 156/319 (48%), Gaps = 14/319 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L +  + L +G  +A+PTETVYGLA D+RN  A+ +++++K+RP  NPLI H++D S
Sbjct: 28  TTDLDRCVQQLRSGNLLAMPTETVYGLAADARNGEAVAKVFQLKQRPDSNPLIVHLADAS 87

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                AS  P     L    WPGPLTLVL   +  D+    TA   +   RVP     + 
Sbjct: 88  QASNWASHIPAQAQVLMDACWPGPLTLVLP--ARDDVLRSVTAGQDSVALRVPAHPVARA 145

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++ +G  L  PSANR   IS T+  H+      +   LI+DGG  ++GLES+IV++   
Sbjct: 146 LLQAFGDGLVAPSANRYMSISPTSAAHVAR-QFAESELLILDGGACQVGLESSIVSLLPG 204

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
              R+LR G L    L++ +   LE       + ++PG  + HYAP +     +    P+
Sbjct: 205 DSPRLLRHGMLGQARLEQVLGQALENRPG---SVRAPGQCRRHYAPGTPTSSFSELPRPQ 261

Query: 247 EALIRFGNVPI-KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            A    G +   +   +   +++LS  G  +  A  L+  +   D      I     P  
Sbjct: 262 LADPDCGWIWCGQAHPSRGPAVDLS--GDPERYAAGLYAALYQLDALALRHIHIQLPPQS 319

Query: 306 GLGIAINNRLERA---AAP 321
               A++ RL RA   AAP
Sbjct: 320 AAWAAVHERLSRACEPAAP 338


>gi|188591315|ref|YP_001795915.1| hypothetical protein RALTA_A0528 [Cupriavidus taiwanensis LMG
           19424]
 gi|170938209|emb|CAP63195.1| conserved hypothetical protein, Sua5/YciO/YrdC/YwlC family;
           putative double-stranded RNA binding domain [Cupriavidus
           taiwanensis LMG 19424]
          Length = 329

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 18/324 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L +A   L+AG  +A PTETVYGL  D+ NP A+ R++ +K RP+ +P+I HV D +
Sbjct: 8   AAELDEAVRLLEAGQLVAFPTETVYGLGADAENPAAVGRIFALKGRPSNHPVIVHVVDGA 67

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P +   L   FWPGPLTL+L   +  D          +   R P     + 
Sbjct: 68  DIGYWTDDVPAAAQQLIDAFWPGPLTLILKRAAHIDAA--VAGGQDSIGLRCPSHPVAQA 125

Query: 128 I----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +    +     +A PSAN+ GQ+S T  +H+       +   +++G   ++G+ESTIV++
Sbjct: 126 LLSRFKRGRGGIAAPSANKFGQVSPTTAQHVREEF--GDAVYVLEGDGVEVGIESTIVDL 183

Query: 184 QCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
               +     +LRPG + +  L + +                 G LK+HYAP + + L  
Sbjct: 184 SRLDQGIGPVLLRPGAVTVGMLAQVLGEAPLPPDAAAPRA--SGTLKAHYAPHTPLLLAD 241

Query: 241 IHVNPREALIRFGNVPIKNIENAII----SLNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
                        +  +  +  A +       +   G     A  L+  ++  D  G + 
Sbjct: 242 AQAAAARLEALPADARVAWVGRAPLADQRCTWVQAPGDAAAYAQELYRLLRKLDRQGYTQ 301

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           + F  +P       + +RLERAAA
Sbjct: 302 LVFEVLPEGQDWAGVRDRLERAAA 325


>gi|51598986|ref|YP_073174.1| hypothetical protein BG0756 [Borrelia garinii PBi]
 gi|51573557|gb|AAU07582.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 337

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/335 (30%), Positives = 162/335 (48%), Gaps = 18/335 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  SN ++KA +F+  G  +  PTETVYG+  ++ N  A++ ++ +KKR   NPL
Sbjct: 1   MISTEIIRSNQIQKAAKFIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+     P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELTEYIPKSALMLIKRFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+A PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKIALNLIKASKVPIAAPSANISKRPSATNFEMALKE-LNGLVRGIIKLEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST++    +  V ILRPG +  + +++ +     + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVIGFDLKDNVIILRPGAITKKMIEKELKGRYTVNYAETKIELEKSPGNIIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI-KNIENAII------SLNLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I K   N+ +        N++    L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRRYLNKDTKILITKPTLNSYLFNFLWDKKNITVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             + ++    I    + +  LG +INNR+ +A++ 
Sbjct: 298 IKS-ENNYKQILSEFVKDEELGYSINNRIRKASSN 331


>gi|161523856|ref|YP_001578868.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC
           17616]
 gi|189351383|ref|YP_001947011.1| putative translation factor [Burkholderia multivorans ATCC 17616]
 gi|160341285|gb|ABX14371.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC
           17616]
 gi|189335405|dbj|BAG44475.1| putative translation factor [Burkholderia multivorans ATCC 17616]
          Length = 342

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H+          A +   +
Sbjct: 24  GQLVAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWAAELPADA 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
             L   FWPGPLTL+L       I    +    +   R P     + +            
Sbjct: 84  QKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +  + +   +          + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +            A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 ADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|121606749|ref|YP_984078.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595718|gb|ABM39157.1| translation factor SUA5 [Polaromonas naphthalenivorans CJ2]
          Length = 327

 Score =  263 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/330 (30%), Positives = 154/330 (46%), Gaps = 17/330 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I   TD  A+ +A   + AG  +  PTETVYGL  D+ +  A+  +++ K RPA +PLI 
Sbjct: 2   IRPGTDPQAIVEAARRIQAGALVGFPTETVYGLGADASSDAAVAGIFKAKGRPADHPLIV 61

Query: 63  HVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D S V  +A SV   +  L + FWPGPLT++L       +   +    ++   R P 
Sbjct: 62  HVADASQVSDYASSVPAFAARLMQAFWPGPLTVILPRREGVALA--AAGGQESIGLRCPA 119

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  ++  G  +A PSANR G++S T   H+       +  L++DGG   +G+ES+I
Sbjct: 120 HPVALAFLKACGTGVAGPSANRFGRVSPTTALHVAQEF--GDELLVLDGGPCAVGIESSI 177

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVR 237
           V+    + V +LRPG L    L+ A    +   E      S P++ G L++HYAP ++VR
Sbjct: 178 VDCTRGRPV-LLRPGVLTRAQLEAACGEPVLGKEDAQAAGSAPRASGTLEAHYAPNAKVR 236

Query: 238 L-RAIHVNPREALIRFGNVPIKNIENAII------SLNLSKTGKLKEAAFNLFNYMKIAD 290
           L  A  +     L+      I      ++       L           A  LF  ++  D
Sbjct: 237 LMDAGAMQAALDLLGADAAHIAIYARTLLGIKSTRVLYRRMPDDALATAQQLFAVLRDFD 296

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             GA  I   + P       + +RL RAAA
Sbjct: 297 AQGARLIWVETPPVACEWDGVRDRLGRAAA 326


>gi|221200181|ref|ZP_03573224.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2M]
 gi|221206666|ref|ZP_03579678.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2]
 gi|221173321|gb|EEE05756.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2]
 gi|221180420|gb|EEE12824.1| Sua5/YciO/YrdC family protein [Burkholderia multivorans CGD2M]
          Length = 342

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 24/318 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ +P A+ R+Y  K RPA +P+I H+          A +   +
Sbjct: 24  GQLVAFPTETVYGLGGDAASPDAVARIYAAKGRPANHPVIVHLPPGGDPAYWAAELPADA 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
             L   FWPGPLTL+L       I    +    +   R P     + +            
Sbjct: 84  QKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +  + +   +          + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +            A     ++     +  A +L+  ++  D +  + I    +
Sbjct: 259 ADGERVALVARASRAGRWAQADGVHFVAAPEDPQAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLERAAA 320
           P     IA+N+RL RAAA
Sbjct: 319 PETVEWIAVNDRLGRAAA 336


>gi|332531641|ref|ZP_08407538.1| Sua5/YciO/YrdC/YwlC family protein [Hylemonella gracilis ATCC
           19624]
 gi|332039004|gb|EGI75433.1| Sua5/YciO/YrdC/YwlC family protein [Hylemonella gracilis ATCC
           19624]
          Length = 351

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 98/355 (27%), Positives = 160/355 (45%), Gaps = 42/355 (11%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   D +A+++A + L AG  + +PTETVYGLA D+ +  A+ ++Y  K RPA +PLI 
Sbjct: 2   ILDGRDPSAVQRAAQALRAGELLGLPTETVYGLAADAGSDEAVAKIYAAKGRPAGHPLIV 61

Query: 63  HVSDISMVKKH-----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           H++D S  ++      A V   +  L + FWPGPLTL+L   +       +     +   
Sbjct: 62  HLADESGAREGLAHFAAEVPAFARALMEAFWPGPLTLILPRRAGVAAA--AAGGQHSIGL 119

Query: 118 RVPCGFTKKLIETYGH-----PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           R P     + +           LA PSAN  G++S T   H+ +        LI+DGG  
Sbjct: 120 RCPAHPVAQAVLQAARSLGVLGLAAPSANLFGRVSPTTAAHVQAELGEGL--LILDGGPC 177

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI---SVELEY-------CVDETSTPQS 222
           ++G+ESTIV+      V +LRPG +    +   +     ++              + P++
Sbjct: 178 EVGIESTIVDCTRGAPV-LLRPGQITRVRIDEVLLAAGTDMRLRSADEVQARTAQAAPRA 236

Query: 223 PGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIIS--LNLSKTGKL----- 275
            GML+SHYAPR++VRL            R  +     + + + +  + +     L     
Sbjct: 237 SGMLESHYAPRAKVRLLDAVALQSALAARHSDAGAARLADEVQAPPVAVYARTSLQLPAG 296

Query: 276 ----------KEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                       AA  LF  ++  D++G   I   + P+      + +RL RAAA
Sbjct: 297 VVHRPMPVEAAVAAHELFAALRALDEAGVREIWVETPPDAPAWEGVMDRLSRAAA 351


>gi|293607071|ref|ZP_06689414.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814561|gb|EFF73699.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC
           43553]
          Length = 352

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 92/327 (28%), Positives = 150/327 (45%), Gaps = 28/327 (8%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-AS 75
           + L  G   A PTETVYGL  D+++P A+ ++Y  K RP+ +P+I H++    V    A 
Sbjct: 20  QRLLDGELAAFPTETVYGLGADAQSPEAVAKIYAAKGRPSNHPVIVHIAPTGDVSYWAAD 79

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT---KKLIETYG 132
           V P +  L   FWPGPLTL+L       I    +    +   R P              G
Sbjct: 80  VPPEARLLIDAFWPGPLTLILKRAPH--IADTVSGGQDSIGIRCPSHPVAQALLAAFAAG 137

Query: 133 HP-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQ- 184
            P     +A PSAN+ GQ+S T  +H+ S    +      +++GG S++G+ESTI+++  
Sbjct: 138 KPNGQGGVAAPSANKFGQVSPTRAEHVRSEFPDEVAAGMPVLEGGASEVGIESTILDLSR 197

Query: 185 ---CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
                  V +LRPG +    ++  + V++     + + P++ G LK+HYAPR+ + L + 
Sbjct: 198 LDRGAGPV-LLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTPLELASD 254

Query: 242 HVNPREAL---IRFGNVPIKNIENAIISLNL-----SKTGKLKEAAFNLFNYMKIADDSG 293
                 A    +  G V +        +L+               A  L+  ++  D  G
Sbjct: 255 ERLRDIAQGRNLPSGKVVVVAYGEPPEALDARVQWQPVPADPARYAQALYGLLRDLDTQG 314

Query: 294 ASSIAFSSIPNHGLGIAINNRLERAAA 320
            + I   + P      A+N+R+ RAAA
Sbjct: 315 YARIVVQAPPATDAWHAVNDRIGRAAA 341


>gi|260221970|emb|CBA31066.1| hypothetical protein Csp_C26690 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 352

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 93/330 (28%), Positives = 143/330 (43%), Gaps = 36/330 (10%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS-----MVKKHASV 76
           G  + +PTETVYGL  D+ +P A+ +++  K RP+ +PLI HV+        +    A V
Sbjct: 28  GGLLGLPTETVYGLGADASDPVAVGKIFNAKGRPSDHPLIVHVAAFDGGMGGVAHYCARV 87

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP- 134
              +  L   FWPGPLTL+L       +   +     +   R P     + ++ T   P 
Sbjct: 88  PAFAQQLMSAFWPGPLTLILPRKEG--VGEAAAGGQNSIGLRCPAHPVAQAVLATLRKPS 145

Query: 135 --------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
                   +A PSAN+ G++S T   H+ S     +  LI+DGG  ++G+ESTI++    
Sbjct: 146 DGGREVWGIAAPSANKFGRVSPTTAAHVHSEF--GDDLLILDGGPCEVGIESTIIDCTRG 203

Query: 187 KKVRILRPGGLEIETLKRAISVEL----EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
             V +LRPG +  + ++ A   +L    E        P++ G L SHYAP + VRL    
Sbjct: 204 APV-LLRPGSITAQQVEDACGRKLLSKEELLAQSQQAPRASGTLDSHYAPSATVRLMDAK 262

Query: 243 VNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKE----------AAFNLFNYMKIAD 290
                  +  G  P        +     L     L            AA  LF+ ++  D
Sbjct: 263 ALQSALDLLSGTTPPDKRPTIALYHRSPLHVRSPLVTAHRMPSHAQPAAHELFSKLREMD 322

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G   I   + P+      + +RL RAAA
Sbjct: 323 AQGVKLIWVEAPPDSPEWDGVRDRLTRAAA 352


>gi|219684274|ref|ZP_03539218.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii PBr]
 gi|219672263|gb|EED29316.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii PBr]
          Length = 335

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 18/335 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKR   NPL
Sbjct: 1   MISTEIIRSNQIQKAAKLIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKRFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+A PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKIALNLIKASKVPIAAPSANISKRPSATNFEMALKE-LNGLVRGIIKLEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST++    +  V ILRPG +  + +++ +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVIGFDLKDNVIILRPGAITKKMIEKGLQGKYTVNYAETKIELEKSPGNMIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI-KNIENAII------SLNLSKTGKLKEAAFNLFNYM 286
             V L     N R  L +   + I K   N+ +        N++    L+E A NL+  +
Sbjct: 238 IPVYLFKNQDNIRRYLNKDTKILITKPTLNSYLFNFLWDKKNITVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  ++    I    + +  LG +INNR+ +A++ 
Sbjct: 298 -VNSENSYKQILSEFVKDEELGYSINNRIRKASSN 331


>gi|300705060|ref|YP_003746663.1| hypothetical protein RCFBP_20897 [Ralstonia solanacearum CFBP2957]
 gi|299072724|emb|CBJ44077.1| conserved protein of unknown function, translation factor domain,
           SUA5 type [Ralstonia solanacearum CFBP2957]
          Length = 336

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 99/328 (30%), Positives = 156/328 (47%), Gaps = 32/328 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128
             A   P ++L L + FWPGPLTL+L       I         +   R P     + +  
Sbjct: 76  YWADDLPGIALQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSHPVAQALLS 133

Query: 129 --ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
             +     +A PSAN+ GQ+S T  +H+       E   +++G    +G+ESTIV++   
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVREEF--GEAVFVLEGDGVDVGIESTIVDLSRL 191

Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            +     +LRPG +  E ++R   V     + + + P++ G L++HYAPR+ + L A   
Sbjct: 192 DQGIGPVLLRPGAITPEDIERVTGV--MPSLPDAAAPRASGTLRAHYAPRTPLYLLAAAD 249

Query: 244 NP-REALIRFG----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
            P R A +  G          ++P    + A      +    L           +  D  
Sbjct: 250 VPTRLAALPAGQRIVWVGAPVDLPSGCDQRAAPVTPAAYANALYALL-------RELDHG 302

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G  +I   ++P+     A+N+RL RAAA
Sbjct: 303 GYHAIWVQTLPDTSAWAAVNDRLRRAAA 330


>gi|163848701|ref|YP_001636745.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526643|ref|YP_002571114.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl]
 gi|163669990|gb|ABY36356.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450522|gb|ACM54788.1| Sua5/YciO/YrdC/YwlC family protein [Chloroflexus sp. Y-400-fl]
          Length = 351

 Score =  261 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 95/322 (29%), Positives = 150/322 (46%), Gaps = 26/322 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T   A+  A E L  G  +A PTETVYGL   + +  A+  ++  K RPA +PLI H++ 
Sbjct: 8   TSPAAIAMAGELLRRGELVAFPTETVYGLGGHALDERAVAAIFTAKGRPANDPLIVHITA 67

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            + +    A+V PL+  LA   WPGPLTL++       +    TA  +T   RVP     
Sbjct: 68  ATDLPLVAATVPPLAGRLAAACWPGPLTLIVPRHP--RVPLTVTAGRETVAVRVPSHPIA 125

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L+   G P+A PSANR G  S T   H+L + +   I  +IDGG + IG+EST+++  
Sbjct: 126 QELLRAAGVPVAAPSANRFGHTSPTTADHVL-ADLDGRIAAVIDGGATPIGIESTVLDCT 184

Query: 185 CEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAI 241
            +    +LRPGG+ +ETL   I    +  +   DE     +PG+L+ HYAP  ++ L + 
Sbjct: 185 TD-PPTLLRPGGISLETLTDLIGEVQLRSQPTADEAHGLTAPGLLERHYAPDHELWLFSG 243

Query: 242 HVNPREALIRFGNVPIKN--------IENAIISL---------NLSKTGKLKEAAFNLFN 284
             +   A +R                +    ++L         +L  T      A  L+ 
Sbjct: 244 KPDSVLARLRAETEAALARGLRVGLLLPEEDLALMHDLPVERESLGPTSDPAIIARRLYA 303

Query: 285 YMKIADDSGASSIAFSSIPNHG 306
            ++  D+     +    +   G
Sbjct: 304 ALRALDERQPDRMFTRDLDEAG 325


>gi|219685554|ref|ZP_03540371.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii Far04]
 gi|219672953|gb|EED29975.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia garinii Far04]
          Length = 335

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 18/335 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  SN ++KA + +  G  +  PTETVYG+  ++ N  A++ ++ +KKR   NPL
Sbjct: 1   MISTEIIKSNQIQKAAKLIKTGELVVFPTETVYGIGANAYNEDAVKMIFLVKKRSIQNPL 60

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV  +  +K+ +   P  +L L K F PGPLT VL    +  I    + NL T   R+
Sbjct: 61  IVHVDTVKKIKELSEYIPKSALMLIKRFSPGPLTYVL--KKSIKISRFVSGNLDTVAIRI 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK---IG 175
           P       LI+    P+A PSAN S + S TN +  L   +   +  II    +K   IG
Sbjct: 119 PANKIALNLIKASKVPIAAPSANISKRPSATNFEMALKE-LNGLVRGIIKLEENKDFNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETSTPQSPGMLKSHYAPR 233
           +EST++    +  V ILRPG +  + +++ +  +  + Y   +    +SPG +  HY P+
Sbjct: 178 IESTVIGFDLKDNVIILRPGAITKKMIEKGLQGKYTVNYAETKIELEKSPGNMIEHYKPK 237

Query: 234 SQVRLRAIHVNPREALIRFGNVPI-KNIENAII------SLNLSKTGKLKEAAFNLFNYM 286
             V L     N R+ L +   + I K   N+ +        N+     L+E A NL+  +
Sbjct: 238 IPVYLFKSQDNIRKYLNKDTKILITKPTLNSYLFNFLWDKKNIIVFNTLEEYAQNLYKEL 297

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            +  ++    I    + +  LG +INNR+ +A++ 
Sbjct: 298 -VNSENSYKQILSEFVKDEELGYSINNRIRKASSN 331


>gi|300692406|ref|YP_003753401.1| hypothetical protein RPSI07_2776 [Ralstonia solanacearum PSI07]
 gi|299079466|emb|CBJ52141.1| conserved protein of unknown function, translation factor domain,
           SUA5 type [Ralstonia solanacearum PSI07]
          Length = 336

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/328 (29%), Positives = 157/328 (47%), Gaps = 32/328 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV D + + 
Sbjct: 16  LDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYAMKGRPSNHPVIVHVVDGADLT 75

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128
             A   P ++L L + FWPGPLTL+L       I         +   R P     + +  
Sbjct: 76  YWADDVPGIALQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSHPVAQALLS 133

Query: 129 --ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
             +     +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTIV++   
Sbjct: 134 RFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDTVFVLEGDGVDVGIESTIVDLSRL 191

Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-LRAIH 242
            +     +LRPG +  E ++R   V     + + + P++ G L++HYAPR+ +  L A  
Sbjct: 192 DEGIGPVLLRPGAITPEDIERVTGV--MPSLPDAAAPRASGTLRAHYAPRTPLYLLDAAD 249

Query: 243 VNPREALIRFG----------NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
           V  R A +  G          ++P    + A  +   +    L           +  D  
Sbjct: 250 VPARLAALPAGQRIAWVGAPVDLPSGCDQRAAPATPAAYANALYALL-------RDLDRC 302

Query: 293 GASSIAFSSIPNHGLGIAINNRLERAAA 320
           G  +I   ++P+     A+N+RL RAAA
Sbjct: 303 GYHAIWVETLPDTSAWAAVNDRLRRAAA 330


>gi|134296828|ref|YP_001120563.1| translation factor SUA5 [Burkholderia vietnamiensis G4]
 gi|134139985|gb|ABO55728.1| translation factor SUA5 [Burkholderia vietnamiensis G4]
          Length = 345

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/315 (26%), Positives = 135/315 (42%), Gaps = 24/315 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+          A V   +
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWAADVPADA 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
             L   FWPGPLTL+L       I    +    +   R P     + +            
Sbjct: 84  RALIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTIV++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTIVDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQV----------RLRAIH 242
           PG +  + +   +          + + P++ G LK+HYAPR+ +           L A  
Sbjct: 199 PGHVTPQQIADVLGRAPRLPDGSDATAPRASGTLKAHYAPRTPLALLPFDALEPLLAAAQ 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            +     +            A     ++        A +L+  ++  D +  + I    +
Sbjct: 259 ADGERVALVARASRAGRWAQADGVHFIAAPEDPHAYARDLYGMLRALDRAQVARILVEKL 318

Query: 303 PNHGLGIAINNRLER 317
           P     IA+N+RL R
Sbjct: 319 PETVEWIAVNDRLGR 333


>gi|309791839|ref|ZP_07686326.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6]
 gi|308226161|gb|EFO79902.1| Sua5/YciO/YrdC/YwlC family protein [Oscillochloris trichoides DG6]
          Length = 347

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/342 (30%), Positives = 158/342 (46%), Gaps = 38/342 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  +++A   L  G  +A PTETVYGL  D+ NPTA+ R++  K RPA +PLI H++D+
Sbjct: 13  NTATIQEAATILATGGLVAFPTETVYGLGADALNPTAVGRIFAAKGRPAEDPLIVHLADL 72

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S + +      P+  HLA   WPGPLTLVL       +    TA L+T   RVP     +
Sbjct: 73  SDLARVTPHCPPVVAHLAAHCWPGPLTLVLPRGPA--VPYRVTAGLETVAVRVPAHPVAR 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI   G P+A PSANR G  S T   H+L + +   I +++DGG + +G+EST++++  
Sbjct: 131 ALIAAAGTPIAAPSANRFGHTSPTTAAHVL-ADLDGRIEMVLDGGPATLGVESTVLDL-S 188

Query: 186 EKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
                +LRPGG+ +ETL+  +  V L      T    +PG+L  HYAP + + L      
Sbjct: 189 APIPTLLRPGGVSLETLRDLLGEVALGGRAAPTGGQIAPGLLDRHYAPDNALHLCIGAAA 248

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYM------------------ 286
             +  +             +    L     +      LF  +                  
Sbjct: 249 ACQGWLYHTAQTQLAAGRQVGL--LIPDDDVA-----LFADLAVDIEPLGPTSDPLVIAA 301

Query: 287 ------KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
                 +  D      I    + + G+  AI +RL RAAA R
Sbjct: 302 RLYAALRALDARQPDLILARDVGDVGIARAIRDRLTRAAAGR 343


>gi|257093416|ref|YP_003167057.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045940|gb|ACV35128.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 352

 Score =  259 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 107/339 (31%), Positives = 157/339 (46%), Gaps = 33/339 (9%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           TD   + +A   L AG  +A PTETVYG+  D+ NP A+ R++  K RPA +PLI H+  
Sbjct: 3   TDQAVIDRAVALLQAGELVAFPTETVYGVGADAANPAAVGRIFTAKGRPADHPLIVHLPG 62

Query: 67  ISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
              + + A   P  +  LA+ FWPGPLTL+L       +  + T    T   RVP     
Sbjct: 63  DGGLDRWARDIPTRAWELAEAFWPGPLTLILKRAPA--VPAIVTGGQDTVGVRVPAHPLA 120

Query: 126 KLIETYG----------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             +                +A PSANR G+IS T   H+  + +   +PLI+DGG   +G
Sbjct: 121 LALLRAYAEAGGGVDGLCGIAAPSANRFGRISPTEAAHV-RAELGDAVPLILDGGRCPVG 179

Query: 176 LESTIVNVQ--CEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYA 231
           +ESTIV++    ++  R+LRPG +  E +   I V  E+     +  TP+  G L +HYA
Sbjct: 180 IESTIVDLTRGDDQAPRLLRPGRVTPEQIAAVIGVLPEIVTRPADDGTPRVSGSLAAHYA 239

Query: 232 PRSQVRLRAI-----------HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280
           P + +R                   R AL+    +P  +  +A + L +   G     A 
Sbjct: 240 PTTPLRFVTQADLVDVVDELRQTGRRCALLHHSQLPNASALHAGLRLPVDPQG----YAR 295

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
            L+  ++  D   A  I    IP      AI +RL RAA
Sbjct: 296 GLYAALRELDQMAADIILVEEIPAAPAWAAIADRLHRAA 334


>gi|301116637|ref|XP_002906047.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262109347|gb|EEY67399.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 363

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/365 (26%), Positives = 166/365 (45%), Gaps = 39/365 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   D+     A + L  G  +A PTETVYGL  ++ N  A+  ++E K RP  +PL
Sbjct: 1   MARLLKPDAEGFSFAAQQLRLGQLVAFPTETVYGLGANALNSEAVLAIFEAKARPLTDPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I HV  +    K   + P        L + FWPGPLTL+   +   ++  + +AN     
Sbjct: 61  IVHVPALDDAVKLVDMTPTGRQAFECLGRAFWPGPLTLIAKAVP--ELPLMLSANTGFVG 118

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GIS 172
            R P     + L++    P+A PSANR G +S T  KH++      E   +I+    G  
Sbjct: 119 LRCPKHPIAQALLKEAKVPVAAPSANRFGHVSPTTAKHVMDDLGACENLSVIEATEEGCC 178

Query: 173 KIGLESTIVNVQCEK-KVRILRPGGLEIETLK--------------RAISVELEYCVDET 217
           ++G+EST+V +  E+ K+ + R GG+  + LK                ++++ E  +   
Sbjct: 179 EVGIESTVVKIVPEECKLIVFRRGGVSEQALKLVLEDNAELLGGQYEVVTIQKEAKMQTK 238

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNP-----------REALIRFGNVPIKNIENAIIS 266
              Q+PG + +HYAP     L                  R  +I F        +     
Sbjct: 239 EAQQAPGQMITHYAPDVDTYLYQADAAETMDASRKQDLSRWVVIDFHGKLSDLKDRVGGY 298

Query: 267 LNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI--PNHGLGIAINNRLERAAAPRN 323
           L+LS TG + EA+  +F+ ++ +++  G   +  + +    H    A+++R+ RAA+ + 
Sbjct: 299 LDLSPTGDVAEASQRIFDSLRWSENVQGVERVLITGVSSETHEQAAALHDRMYRAASGKQ 358

Query: 324 QSQRI 328
           ++ ++
Sbjct: 359 RALQL 363


>gi|226228996|ref|YP_002763102.1| hypothetical protein GAU_3590 [Gemmatimonas aurantiaca T-27]
 gi|226092187|dbj|BAH40632.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 363

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 163/371 (43%), Gaps = 61/371 (16%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+++++     D + L  A + L AG  +A PTETVYGL  ++ +P A+ R+Y  K RPA
Sbjct: 1   MRVVAVDAVHPDPDVLADAAQILRAGGLVAFPTETVYGLGANALDPDAVARIYAAKGRPA 60

Query: 57  MNPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
            NP+I HV+   M    AS  P+ +  LA+  WPGPLTLV+       +  + +A   T 
Sbjct: 61  WNPVIMHVASADMAAGFASHWPISAARLAERCWPGPLTLVVPRADH--VPDIVSAGGDTV 118

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             RVP       LI   G P+A PSANR  Q+S T  +H++ +S+   + L++DGG S +
Sbjct: 119 ALRVPSHPVALALITAAGCPIAAPSANRFTQVSPTTAQHVV-ASLGDRVGLVLDGGPSTV 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA---ISVELEYCV----------------- 214
           G+EST+V+   +  V ILRPG L  ETL+ A   + V + +                   
Sbjct: 178 GIESTVVDCTGD-TVTILRPGMLGRETLEAALDGLGVAVRHAAPRAVPHAASQALAEAST 236

Query: 215 ----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLS 270
                  + P+SPGM   HYAPR+ V L A       +                ++L   
Sbjct: 237 HADDGTPAAPRSPGMADRHYAPRADVWLFAPEQQAEVSTALIARQEGSADSGPTMALLRG 296

Query: 271 -----KTGKLKEAAFNLFNYM-----------------KIADDSGASSIAFSSIPNHGLG 308
                 +G   E        +                    D   AS +     P+    
Sbjct: 297 TVFGPSSGNGPEMM-----TLTMPQAPDAYARALYAALHEVDARRASLVLIEMPPDEPGW 351

Query: 309 IAINNRLERAA 319
             + +RL RA+
Sbjct: 352 EGVRDRLTRAS 362


>gi|17545296|ref|NP_518698.1| hypothetical protein RSc0577 [Ralstonia solanacearum GMI1000]
 gi|17427588|emb|CAD14107.1| probable translation factor, sua5 type protein [Ralstonia
           solanacearum GMI1000]
          Length = 336

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 95/330 (28%), Positives = 154/330 (46%), Gaps = 24/330 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  +  L +A   L+AG  +A PTETVYGL  D+ NP AI R+Y +K RP+ +P+I HV 
Sbjct: 10  MPPAARLDEAARRLEAGELVAFPTETVYGLGADAENPQAIARIYALKGRPSNHPVIVHVV 69

Query: 66  DISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           D + +   A   P ++L L + FWPGPLTL+L       I         +   R P    
Sbjct: 70  DGADLTYWADDVPGIALQLVEAFWPGPLTLILKRAPH--IPAAVAGGQDSVGLRCPSHPV 127

Query: 125 KKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            + +    +     +A PSAN+ GQ+S T  +H+       +   +++G    +G+ESTI
Sbjct: 128 AQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIESTI 185

Query: 181 VNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           V++    +     +LRPG +  E + R   V     + + + P++ G L++HYAPR+ + 
Sbjct: 186 VDLSRLDQGVGPVLLRPGAITPEDIGRVTGV--MPLLPDAAAPRASGTLRAHYAPRTPLY 243

Query: 238 LRAIHVNPREAL-------IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
           L A    P           I +   P+            +       A +     ++  D
Sbjct: 244 LLAAADVPARLAALPAGRRIVWVGAPVDLPPGCDQHAAPATPAAYANALY---ALLRELD 300

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             G  +I   ++P+     A+N+RL RAAA
Sbjct: 301 RGGYHAIWVETLPDTSAWAAVNDRLRRAAA 330


>gi|52843166|ref|YP_096965.1| Sua5/YciO/YrdC/YwlC family protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630277|gb|AAU29018.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 322

 Score =  258 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 107/331 (32%), Positives = 162/331 (48%), Gaps = 15/331 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I++      L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PL
Sbjct: 1   MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKGRPLNHPL 56

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    + K    V   +  LA  FWPGPLTLV        I+PL T    T   R 
Sbjct: 57  IVHIASNWDLHKLVEEVPEYAHQLASKFWPGPLTLVF-YCKKDQINPLITGGQSTIAIRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+KL++    P+  PSAN  G+IS T   H+   S       I+DGG  ++G+ES
Sbjct: 116 PDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV+       +ILR G ++ +T+   I++    C  + +  + PG L SHY P+  +  
Sbjct: 175 TIVDATNPVSYQILRHGIIDEKTIAETIAIG---CSTQKNNIRVPGKLDSHYQPQKTLYY 231

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294
             +   ++      +     I N +   +  NL    G   +++A++L+  +++AD S A
Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             IA    PN      +  R+ +A  P +Q 
Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|116328292|ref|YP_798012.1| Sua5 family translation factor [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331018|ref|YP_800736.1| Sua5 family translation factor [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116121036|gb|ABJ79079.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124707|gb|ABJ75978.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 314

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 96/320 (30%), Positives = 159/320 (49%), Gaps = 19/320 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS    +A + L  G  +  PTETVYG+   + +  A +++YE+K RP  NPLI HV 
Sbjct: 10  ITDSPL--EAAKILLEGGNVVFPTETVYGIGASAFDFKACKKIYEVKNRPFDNPLILHVE 67

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           ++S +K + ++   +  + + F PGP+T +     T     L TA L T   R+P   T 
Sbjct: 68  NLSSLKTYGNISEKAGLVFQNFSPGPITGIF----TKKNQDLFTAGLNTVALRIPSNPTT 123

Query: 126 KL-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +L +   G P+A PSAN SG+ S+T +++IL       +  I+ G   KIG+EST+++  
Sbjct: 124 QLFLNLCGVPVAAPSANLSGKPSLTKIEYIL-EEFSGRVDCILKGEEPKIGIESTVIDFS 182

Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH 242
            E  V +LRPG ++   L + +     +E   +    P+SPG+   HYAP  +V L    
Sbjct: 183 SEPPV-LLRPGFVDRNDLLKILPDLKGIESFNELNKIPRSPGLKYRHYAPACKVVL---K 238

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
            + +     F  +       ++  + +S     +E   +++++    D  G        I
Sbjct: 239 DSLKGISGNFAQIGFHFESESMFQILVSSN---EEYMKSIYSFFVECDRKGIKEAWCE-I 294

Query: 303 PNHGLG-IAINNRLERAAAP 321
           P  G G  A+ NR+ +AA+ 
Sbjct: 295 PKDGNGKEALINRISKAASK 314


>gi|154297352|ref|XP_001549103.1| hypothetical protein BC1G_12080 [Botryotinia fuckeliana B05.10]
 gi|150858585|gb|EDN33777.1| hypothetical protein BC1G_12080 [Botryotinia fuckeliana B05.10]
          Length = 334

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 139/249 (55%), Gaps = 23/249 (9%)

Query: 11  ALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++ +A E+L    +P+A PTETVYGL  D+    A++ +Y+ K RP+ NPLI HV D++M
Sbjct: 46  SVAEAAEYLKTQSIPVAFPTETVYGLGADATRSDAVKGIYKAKGRPSDNPLIIHVCDLTM 105

Query: 70  VK-------------KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           ++               + +  +   L K FWPGPLT++L   S + + P  TA L T  
Sbjct: 106 LRSLLTSTDNQSVDADFSEIPDIYKPLIKRFWPGPLTVLLPNPSPSKLAPEVTAGLPTFG 165

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       LI   G PLA PSAN S + S T  +H+    +   I +I+DGG  ++G
Sbjct: 166 ARMPSSPLALSLIRLAGVPLAAPSANASTKPSCTTAQHV-HHDLDGRIEIILDGGACQVG 224

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVE--LEYCVDETS----TPQSPGMLKSH 229
           +EST+V+  C+  V +LRPGG+ I+ ++     E  ++   D++      P++PGM   H
Sbjct: 225 VESTVVDGMCDPPV-VLRPGGVSIDEIRECPGWEGVVKGYKDQSEIGDKAPRAPGMKYKH 283

Query: 230 YAPRSQVRL 238
           Y+P+++V L
Sbjct: 284 YSPKAKVIL 292


>gi|311108227|ref|YP_003981080.1| SUA5 domain-containing protein [Achromobacter xylosoxidans A8]
 gi|310762916|gb|ADP18365.1| SUA5 domain protein [Achromobacter xylosoxidans A8]
          Length = 350

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 148/323 (45%), Gaps = 28/323 (8%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPL 79
            G   A PTETVYGL  D+ NP A+ ++Y  K RP+ +P+I H++    +    A V   
Sbjct: 24  DGELAAFPTETVYGLGADAENPQAVAKIYAAKGRPSNHPVIVHIAPQGDLSYWAAEVPQE 83

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT---KKLIETYGHP-- 134
           +  L   FWPGPLTL+L       I    +    +   R P              G P  
Sbjct: 84  ARLLIDAFWPGPLTLILKRAPH--IVDTVSGGQDSIGIRCPSHPVAQALLAAFAAGKPNG 141

Query: 135 ---LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQ----C 185
              +A PSAN+ GQ+S T  +H+ S    +      +++GG S++G+ESTI+++      
Sbjct: 142 QGGVAAPSANKFGQVSPTRAEHVRSEFPEEVAAGMPVLEGGASEVGIESTILDLSRLDRG 201

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA---IH 242
              V +LRPG +    ++  + V++     + + P++ G LK+HYAPR+ + L     + 
Sbjct: 202 AGPV-LLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTALELATDARLR 258

Query: 243 VNPREALIRFGNVPIKNIENAIISLNL-----SKTGKLKEAAFNLFNYMKIADDSGASSI 297
              +   +  G V +    +   +L+      +        A  L+  ++  D  G + I
Sbjct: 259 DVVQGQGLPEGKVVVVAYGDRPAALDARVQWQAVPADPARYAQALYGLLRDLDQQGYARI 318

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
              + P      A+N+R+ RAAA
Sbjct: 319 IVQAPPATDDWHAVNDRIGRAAA 341


>gi|113866600|ref|YP_725089.1| putative translation factor (SUA5) [Ralstonia eutropha H16]
 gi|113525376|emb|CAJ91721.1| putative translation factor (SUA5) [Ralstonia eutropha H16]
          Length = 325

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 144/324 (44%), Gaps = 18/324 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L +A   L+AG  +A PTETVYGL  D+ NP A+ R++ +K RP+ +P+I HV D +
Sbjct: 4   AAELDEAVRLLEAGQLVAFPTETVYGLGADAENPEAVARIFALKGRPSNHPVIVHVVDGA 63

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +      V   +  L   FWPGPLTL+L   +   IHP       +   R P     + 
Sbjct: 64  DIGYWTDEVPEAAQQLIDAFWPGPLTLILKRAAH--IHPAVAGGQDSIGVRCPSHPVAQA 121

Query: 128 I----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +    +     +A PSAN+ GQ+S T  +H+       +   +++G   ++G+ESTIV++
Sbjct: 122 LLARFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVYVLEGDGVEVGIESTIVDL 179

Query: 184 QCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRA 240
               +     +LRPG +    + + +                 G LK+HYAP + + L  
Sbjct: 180 SRLDQGIGPVLLRPGAITAAMMAQVLGAAPLPPDAAAPRA--SGTLKAHYAPHTPLLLAD 237

Query: 241 IHVNPREALIRFGNVPIKNIENAIIS----LNLSKTGKLKEAAFNLFNYMKIADDSGASS 296
                 +      +  +  +  A +       +         A  L+  ++  D  G + 
Sbjct: 238 AQAASAQLASLPDDARVAWVGRAPLVDQRCTWVQAPADAAAYARELYRLLRKLDKQGYTQ 297

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           + F  +P       + +RLERAAA
Sbjct: 298 LMFEVLPEGQDWAGVRDRLERAAA 321


>gi|119193304|ref|XP_001247258.1| hypothetical protein CIMG_01029 [Coccidioides immitis RS]
          Length = 736

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 26/251 (10%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75
           P+A PTETVYGL  D+    A++ +Y  K+RP+ NPLI HVS    +++           
Sbjct: 479 PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTLN 538

Query: 76  ---------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
                    + P+   L + FWPGPLT+++     + + P  T+NL T   R+P     +
Sbjct: 539 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 598

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    PLA PSAN S + S T  +H+  + +   I +I+DGG   +G+EST+V+   
Sbjct: 599 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGPCGVGVESTVVD-GL 656

Query: 186 EKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                ILRPGG+ IE ++     E       +  +    TP++PGM   HY+PR++V L 
Sbjct: 657 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVLF 716

Query: 240 AIHVNPREALI 250
                     +
Sbjct: 717 ETSQEMPSVAL 727


>gi|258614609|ref|ZP_05712379.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO]
          Length = 231

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/234 (36%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPL
Sbjct: 1   METKR-YDETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+    VK++     P +  + K FWPGPLTL+  +   T +  + T  L TA FR+
Sbjct: 60  IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKKDT-LPSVVTGGLSTAAFRI 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  IID G ++IG+ES
Sbjct: 119 PDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGIIDDGATRIGVES 177

Query: 179 TIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKS 228
           T++++        ILRPG +  E ++  I   +   ++ V E  TP++PGM   
Sbjct: 178 TVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAPGMKYK 231


>gi|254709554|ref|ZP_05171365.1| Sua5/YciO/YrdC/YwlC protein family [Brucella pinnipedialis B2/94]
 gi|261317082|ref|ZP_05956279.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
 gi|261296305|gb|EEX99801.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
          Length = 242

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 139/235 (59%), Gaps = 7/235 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+ +A E L  G  +AIPTETVYGLA D+ N   +  ++  K RP  NPLI HV  I
Sbjct: 8   DDGAVLRAVEVLRRGGLVAIPTETVYGLAADAANGEGVAGIFAAKGRPQFNPLIAHVDGI 67

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVPCGF 123
           +M  ++ + DP+S  LA+ FWPGPLT+VL L         IHPL TA L T   R+P G 
Sbjct: 68  AMAGRYVAFDPVSRRLAEAFWPGPLTIVLPLKERQDTERPIHPLVTAGLSTLAVRMPHGR 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + +I     P+A PSAN SG+IS T+   +    +   I LI+D G   +G+ESTIV V
Sbjct: 128 VRDVITALDSPVAAPSANTSGRISPTSAAAVAGD-LGGRIDLILDAGPCGVGVESTIVKV 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
             ++ V +LRPGGL  E ++  +  +L    +  +  Q+PGM++SHYAP + +RL
Sbjct: 187 DGDQ-VHLLRPGGLAAEEIEAFLGQKLRRA-EHAAAIQAPGMMESHYAPDASMRL 239


>gi|167378326|ref|XP_001734759.1| sua5 [Entamoeba dispar SAW760]
 gi|165903590|gb|EDR29072.1| sua5, putative [Entamoeba dispar SAW760]
          Length = 289

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  +  A + +  G  +  PTETVYGL  D   P AI +++++K RP  NPLICH+SDI
Sbjct: 28  DSKLITPAAKIIQQGGLVCFPTETVYGLGADVFQPNAINQIFKVKGRPNDNPLICHISDI 87

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M+ K  A V   +  L K FWPG LT++     T  +    TA L T   R+P      
Sbjct: 88  EMLNKLAAHVSEDAHKLIKRFWPGALTIIFPRNET--VPNEVTAGLNTVGVRMPSHPIAY 145

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           + I+    P+A PSAN S + S T  +H +   +   I +IIDGG   IG+EST++ +  
Sbjct: 146 EFIKQCKTPIAAPSANLSTKPSPTIGRHCI-DDLNGRIEMIIDGGACDIGVESTVL-LLG 203

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDET----STPQSPGMLKSHYAPRSQVRLRAI 241
            +   ILRPGG+ +E L+  I     Y +       + P +PGM   HYAP     +   
Sbjct: 204 NEHPTILRPGGVTLEMLREVIPSTQVYKMSTNLSLEAKPPTPGMKYRHYAPSVDTIVITG 263

Query: 242 H 242
            
Sbjct: 264 D 264


>gi|317405862|gb|EFV86145.1| translation factor [Achromobacter xylosoxidans C54]
          Length = 348

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 30/326 (9%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVD 77
           L AG  +A PTETVYGL  D+ NP A+  +Y  K RP+ +P+I H++    +    A V 
Sbjct: 20  LLAGELVAFPTETVYGLGADAENPRAVGSIYAAKGRPSNHPVIVHIAPQGDLSYWAAEVP 79

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT---KKLIETYGHP 134
           P +  L   FWPGPLTL+L       I    +    +   R P              G P
Sbjct: 80  PEARLLIDAFWPGPLTLILKRAPH--IADTVSGGQDSIGIRCPSHPVAQALLAAFAAGKP 137

Query: 135 -----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQ--- 184
                +A PSAN+ GQ+S T   H+      +      +++GG S++G+ESTI+++    
Sbjct: 138 NGQGGVAAPSANKFGQVSPTRADHVRGEFPDEVAAGMPVLEGGASEVGIESTILDLSRLD 197

Query: 185 -CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
                V +LRPG +    ++  + V++     + + P++ G LK+HYAPR+ + L +   
Sbjct: 198 RGAGPV-LLRPGHISAAQIEAVLGVQV--FAPDAAAPRASGTLKAHYAPRTALELASDAR 254

Query: 244 ---------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGA 294
                     P   ++     P     +  I             A  L+  ++  D  G 
Sbjct: 255 LQAALQGRGLPPGKVVVVAYAPPPAACDTRIQWQ-QVPADPARYAQALYALLRDLDGQGF 313

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
           + I   + P+     A+N+R+ RAAA
Sbjct: 314 ARIIVQAPPDSEAWHAVNDRIGRAAA 339


>gi|33592619|ref|NP_880263.1| hypothetical protein BP1528 [Bordetella pertussis Tohama I]
 gi|33572265|emb|CAE41817.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382036|gb|AEE66883.1| hypothetical protein BPTD_1510 [Bordetella pertussis CS]
          Length = 350

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 93/324 (28%), Positives = 142/324 (43%), Gaps = 25/324 (7%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L AG   A PTETVYGL  D+ NP A+ R+Y  K RP+ +P+I H++    V   AS  
Sbjct: 19  CLLAGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDV 78

Query: 78  PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GH 133
           P +   L + FWPGPLTL+L            +    +   R P     + L+  +  G 
Sbjct: 79  PAAARQLIQAFWPGPLTLILKRAPHIGAA--VSGGQDSIGIRCPSHPVAQALLRAFAAGK 136

Query: 134 P-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQCE 186
           P     +A PSAN  G +S T  +H+ +    +      ++DGG +++G+ESTI+++   
Sbjct: 137 PNGQGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMPVLDGGDAEVGIESTIIDLSRL 196

Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            +     +LRPG +    +   + + +             G LK+HYAPR+ + L     
Sbjct: 197 DQGVGPVLLRPGHISAAQVAAVLGMPVARPDAAAPRA--SGTLKAHYAPRTPLELLDAAQ 254

Query: 244 NPREALIRFGNVPIKNIENAIISLNLS-------KTGKLKEAAFNLFNYMKIADDSGASS 296
            PR        V    +  A     LS               A  L+  ++  D  G + 
Sbjct: 255 LPRALAAAPAGVRQAVVALAPAPAGLSADVHWRMAPAGPARYAQALYALLRELDRQGYAR 314

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P  G   A+N+R+ RAAA
Sbjct: 315 ILVEQPPRSGDWDAVNDRIGRAAA 338


>gi|322708850|gb|EFZ00427.1| translation initiation protein Sua5 [Metarhizium anisopliae ARSEF
           23]
          Length = 437

 Score =  256 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 90/254 (35%), Positives = 134/254 (52%), Gaps = 16/254 (6%)

Query: 11  ALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           AL  A E+L     P+A PTETVYGL  D+    +++ +Y  K RP+ NPLI HV D+ M
Sbjct: 42  ALEPAAEYLRTKDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLDM 101

Query: 70  VKKHA------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           ++         ++      L K FWPGPLT++L     + + P  TA L +   R+P   
Sbjct: 102 LRTLLGSRGQDAIPARYQSLVKKFWPGPLTILLPNPDPSPLAPEVTAGLDSFGVRMPSSP 161

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               LI+  G PLA PSAN S + S T  +H+    +   I +I+DGG  ++G+EST+V+
Sbjct: 162 LALTLIKLAGVPLAAPSANASTKPSPTTAQHV-KDDLDGRIEMILDGGSCQVGVESTVVD 220

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPRSQV 236
             C+  V +LRPGG+ I+ L+     E       +   +  + P++PGM   HY+PR++V
Sbjct: 221 GLCDPPV-VLRPGGVGIDELRSCPGWEHVVKAYKDQSEEGKAAPRAPGMKYKHYSPRARV 279

Query: 237 RLRAIHVNPREALI 250
            L         A I
Sbjct: 280 VLYESSYENGRAGI 293



 Score = 72.4 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIA 298
           ++   +     +  G +  +  E      ++    + +  A  LF+ ++  D  GA  I 
Sbjct: 351 QSGQHDEMPYDVCAGELQNEQGETVGQVFDIGLGQETRGIAQGLFSALRELDRRGADVIF 410

Query: 299 FSSIPNH-GLGIAINNRLERAAA 320
              I +   +  A+ NRL +AA+
Sbjct: 411 VDGIDDELDIAAAVMNRLRKAAS 433


>gi|121596222|ref|YP_988118.1| translation factor SUA5 [Acidovorax sp. JS42]
 gi|120608302|gb|ABM44042.1| translation factor SUA5 [Acidovorax sp. JS42]
          Length = 332

 Score =  256 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 100/326 (30%), Positives = 157/326 (48%), Gaps = 21/326 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +++ A + L  G  + +PTETVYGLA D+ N  A+ +++  K RPA +PLI HV+D + +
Sbjct: 10  SVQAAAQALARGELLGLPTETVYGLAADADNDAAVAQIFAAKGRPASHPLIVHVADAAAI 69

Query: 71  KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK---- 125
            ++A   PL +  L   FWPGPLTL+L  L    +   ST    +   R P         
Sbjct: 70  TRYAKEVPLFAQQLIDAFWPGPLTLILPRLPHAAVA--STGGQDSVGLRCPAHPVAHAVL 127

Query: 126 KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           +  +    P   +A PSAN  G++S T  +H+       +  L++DGG   +G+ESTI++
Sbjct: 128 QACQRLEPPVWGVAAPSANHFGRVSPTTAQHVAEEF--GDDLLVLDGGACTVGIESTIID 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RA 240
                 V +LRPG +  E ++RA     L        TP++ G L +HYAP ++VRL  A
Sbjct: 186 CTRGVPV-LLRPGAISREDVQRACGQRPLSKEELPALTPRASGTLLAHYAPTARVRLMDA 244

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYMKIADDSGA 294
             +     ++      I     A +    SK             A  LF  ++  D++G 
Sbjct: 245 KQLQAGLDVLGADAAHIAVYARAPLRAASSKILVRRMPDDAAATAQQLFAALRGFDEAGV 304

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I   + P+      + +RL+RAAA
Sbjct: 305 KLIWIETPPDAPAWEGVRDRLQRAAA 330


>gi|303390839|ref|XP_003073650.1| translation factor [Encephalitozoon intestinalis ATCC 50506]
 gi|303302797|gb|ADM12290.1| translation factor [Encephalitozoon intestinalis ATCC 50506]
          Length = 332

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 98/315 (31%), Positives = 151/315 (47%), Gaps = 28/315 (8%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPLSL 81
            + +PTETVYGLA +  N  A+ R++ +K RPA NPLI  +S + M+++     +     
Sbjct: 21  VVVVPTETVYGLAANIWNLRAVERIFALKGRPANNPLIAGISSVQMLEEIVEGPIPLQYK 80

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSA 140
            L + FWPGPLTL+    S  ++ P+    L T   R+P      K+IE  G PL IPSA
Sbjct: 81  KLIENFWPGPLTLLF--KSKDNVSPIVRGGLNTIAVRMPGSKLLLKIIERLGAPLVIPSA 138

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG+ S T ++H++      E+ L+IDGG S IG+ESTIV    + ++++LRPGG+ +E
Sbjct: 139 NISGRPSPTTIEHVI-EDFGDEVKLMIDGGPSSIGVESTIVQ-YVDGRLQVLRPGGITVE 196

Query: 201 TLKRAISVELEYCVDE-TSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKN 259
            +K  +  E+    +E     +       HY+P+S + L        +  I        N
Sbjct: 197 RIKDVVDCEVIVKKNEWGGKEK----RHKHYSPKSPLVLFKGRQEDIKDGILKYISESSN 252

Query: 260 IENAIISLNLSKT---------------GKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
           I    ++L+                      K    N F  ++  D      I  + +  
Sbjct: 253 IARVGVALHSGMDLKIFSDVKVDIFDMGDDKKNICKNFFRGIRKLDKVN-DIILVAGMDC 311

Query: 305 HGLGIAINNRLERAA 319
              G AI +RLE+AA
Sbjct: 312 DEQGHAIMDRLEKAA 326


>gi|222112449|ref|YP_002554713.1| sua5/ycio/yrdc/ywlc family protein [Acidovorax ebreus TPSY]
 gi|221731893|gb|ACM34713.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax ebreus TPSY]
          Length = 332

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 100/326 (30%), Positives = 158/326 (48%), Gaps = 21/326 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +++ A + L  G  + +PTETVYGLA D+ N  A+ +++  K RPA +PLI HV+D + +
Sbjct: 10  SVQAAAQALARGELLGLPTETVYGLAADADNDAAVAQIFAAKGRPASHPLIVHVADAAAI 69

Query: 71  KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK---- 125
            ++A   PL +  L   FWPGPLTL+L  L+   +   ST    +   R P         
Sbjct: 70  TRYAKEVPLFAQQLIDAFWPGPLTLILPRLAHAAVA--STGGQDSVGLRCPAHPVAHAVL 127

Query: 126 KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           +  +    P   +A PSAN  G++S T  +H+       +  L++DGG   +G+ESTI++
Sbjct: 128 QACQRLEPPVWGVAAPSANHFGRVSPTTAQHVAEEF--GDDLLVLDGGACTVGIESTIID 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRL-RA 240
                 V +LRPG +  E ++RA     L        TP++ G L +HYAP ++VRL  A
Sbjct: 186 CTRGVPV-LLRPGAISREDVQRACGQRPLSKEELPALTPRASGTLLAHYAPTARVRLMDA 244

Query: 241 IHVNPREALIRFGNVPIKNIENAIISLNLSK------TGKLKEAAFNLFNYMKIADDSGA 294
             +     ++      I     A +    SK             A  LF  ++  D++G 
Sbjct: 245 KQLQAGLDVLGADAAHIAVYARAPLRAASSKILVRRMPDDAAATAQQLFAALRGFDEAGV 304

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAA 320
             I   + P+      + +RL+RAAA
Sbjct: 305 KLIWIETPPDAPAWEGVRDRLQRAAA 330


>gi|156062334|ref|XP_001597089.1| hypothetical protein SS1G_01283 [Sclerotinia sclerotiorum 1980]
 gi|154696619|gb|EDN96357.1| hypothetical protein SS1G_01283 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 459

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/248 (35%), Positives = 135/248 (54%), Gaps = 23/248 (9%)

Query: 12  LRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           + +A E+L    +P+A PTETVYGL  D+    A++ +Y+ K RP+ NPLI HV D++M+
Sbjct: 47  IAEAAEYLKTKSIPVAFPTETVYGLGADATRSDAVKGIYKTKGRPSDNPLIIHVCDLTML 106

Query: 71  K-------------KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +                 +  +   L K FWPGPLT++L   S + + P  TA L+T   
Sbjct: 107 RSLLSSTENQSSGADFPEIPEIYKPLIKCFWPGPLTILLPNPSPSKLAPEVTAGLQTFGA 166

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       LI   G PLA PSAN S + S T  +H+    +   I +I+DGG  ++G+
Sbjct: 167 RMPSSPLALSLIRLAGVPLAAPSANASTKPSCTTAEHVY-HDLNGRIEIILDGGACQVGV 225

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL------KRAISVELEYCVDETSTPQSPGMLKSHY 230
           EST+V+  C+  V +LRPGG+ I+ +      +R +    +        P++PGM   HY
Sbjct: 226 ESTVVDGMCDPPV-VLRPGGVSIDEIRGCHGWERVVKGYKDQSEIGDKAPRAPGMKYKHY 284

Query: 231 APRSQVRL 238
           +P+++V L
Sbjct: 285 SPKAKVIL 292



 Score = 78.2 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
           +  +   G+ P        + + L     +K+ A  LF+ ++  D  G   I    I + 
Sbjct: 382 KPWIKDLGDQPTGWHVADCLKIALGSE--VKDIAHGLFSALRELDQKGCDVIFVEGIKDE 439

Query: 306 G-LGIAINNRLERAA 319
           G +  A+ NRL +AA
Sbjct: 440 GNIAAAVMNRLRKAA 454


>gi|307611858|emb|CBX01573.1| hypothetical protein LPW_32601 [Legionella pneumophila 130b]
          Length = 322

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 161/331 (48%), Gaps = 15/331 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I++      L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PL
Sbjct: 1   MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPL 56

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    +      V   +  LA  FWPGPLTLV        I+PL T    T   R 
Sbjct: 57  IVHIASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVF-HCKKDQINPLITGGQSTIAIRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+KL++    P+  PSAN  G+IS T   H+   S       I+DGG  ++G+ES
Sbjct: 116 PDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV+       +ILR G ++ +T+   I++    C  + +  + PG L SHY P+  +  
Sbjct: 175 TIVDATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTLYY 231

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294
             +   ++      +     I N +   +  NL    G   +++A++L+  +++AD S A
Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             IA    PN      +  R+ +A  P +Q 
Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|189911316|ref|YP_001962871.1| SUA5 family translation factor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775992|gb|ABZ94293.1| Translation factor, SUA5 family [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 338

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 101/345 (29%), Positives = 157/345 (45%), Gaps = 36/345 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ +  +D   +R   + +  G  +  PTETV+G+   S N  A  R+Y+IK RP+ NPL
Sbjct: 1   MKTLISSD---VRLLADLIRKGGVVVFPTETVFGIGAASDNEDACLRIYQIKGRPSDNPL 57

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I H S I  +KK   V+ ++  L   F PGP TLVL          +    L T   R+P
Sbjct: 58  IAHFSSIDAIKKVCYVNEVANQLLCEFSPGPFTLVLPKTD----PKIFPKQLPTLAVRIP 113

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++ IE  G P++ PSAN SG+ S+T +  ++       +  I+      +G+EST
Sbjct: 114 KNPVIREWIEACGSPISAPSANLSGRPSLTRMTDVVR-YFDGIVDGILIAEEPNLGIEST 172

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR-----AISVELEYCVDETS--------TPQSPGML 226
           ++ +  E  V +LRPG +E + L+R      I  E++    ++          P SPGM 
Sbjct: 173 VLGLTTEVPV-LLRPGSIESQALRRFLPNLVIPNEIKSKDSKSEDSKTNQSFVPLSPGMK 231

Query: 227 KSHYAPRSQVRLRAIH----------VNPREALIRFGNVPIKNIENAIISLNLSKTGKLK 276
             HYAP ++V L              ++P+ A I F        E    +  L     + 
Sbjct: 232 YKHYAPNAKVVLLETEIFLSTFSKQGMDPKFAWIGFSFGSKTLPEVLGGNRVLCVANNID 291

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLG-IAINNRLERAAA 320
             A  L+ + +  D  G + I    +P    G   + NRLE+AAA
Sbjct: 292 YMAK-LYAFFESCDLEGYNRIYCE-MPREEEGREGLLNRLEKAAA 334


>gi|54298977|ref|YP_125346.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris]
 gi|53752762|emb|CAH14197.1| hypothetical protein lpp3044 [Legionella pneumophila str. Paris]
          Length = 322

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 161/331 (48%), Gaps = 15/331 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I++      L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PL
Sbjct: 1   MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPL 56

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    +      V   +  LA  FWPGPLTLV        I+PL T    T   R 
Sbjct: 57  IVHIASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVF-HCKKDQINPLITGGQSTIAIRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+KL++    P+  PSAN  G+IS T   H+   S       I+DGG  ++G+ES
Sbjct: 116 PDHPLTQKLLKKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV+       +ILR G ++ +T+   I++    C  + +  + PG L SHY P+  +  
Sbjct: 175 TIVDATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTLYY 231

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294
             +   ++      +     I N +   +  NL    G   +++A++L+  +++AD S A
Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             IA    PN      +  R+ +A  P +Q 
Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|54295812|ref|YP_128227.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens]
 gi|53755644|emb|CAH17146.1| hypothetical protein lpl2902 [Legionella pneumophila str. Lens]
          Length = 322

 Score =  255 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 105/331 (31%), Positives = 161/331 (48%), Gaps = 15/331 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I++      L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PL
Sbjct: 1   MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPL 56

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    +      V   +  LA  FWPGPLTLV        I+PL T    T   R 
Sbjct: 57  IVHIASNWDLHDLVEEVPEYAHQLADKFWPGPLTLVF-HCKKDQINPLITGGQSTIAIRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+KL++    P+  PSAN  G+IS T   H+   S       I+DGG  ++G+ES
Sbjct: 116 PDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV+       +ILR G ++ +T+   +++    C  + +  + PG L SHY P+  +  
Sbjct: 175 TIVDATNPDSYQILRHGIIDEKTIAETVAIG---CSTQKNDIRVPGKLDSHYQPQKTLYY 231

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294
             +   ++      +     I N +   +  NL    G   +++A++L+  +++AD S A
Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             IA    PN      +  R+ +A  P +Q 
Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|33600403|ref|NP_887963.1| hypothetical protein BB1417 [Bordetella bronchiseptica RB50]
 gi|33568002|emb|CAE31915.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 345

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 140/324 (43%), Gaps = 25/324 (7%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L AG   A PTETVYGL  D+ NP A+ R+Y  K RP+ +P+I H++    V   AS  
Sbjct: 14  CLLAGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDV 73

Query: 78  P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GH 133
           P  +  L + FWPGPLTL+L            +    +   R P     + L+  +  G 
Sbjct: 74  PAAARQLIQAFWPGPLTLILKRAPHIGAA--VSGGQDSIGIRCPSHPVAQALLRAFAAGK 131

Query: 134 P-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQCE 186
           P     +A PSAN  G +S T  +H+ +    +      ++DGG +++G+ESTI+++   
Sbjct: 132 PNGQGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMPVLDGGDAEVGIESTIIDLSRL 191

Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            +     +LRPG +    +   + + +             G LK+HYAPR+ + L     
Sbjct: 192 DQGVGPVLLRPGHISAAQVAAVLGMPVARPDAAAPRA--SGTLKAHYAPRTPLELLDAAQ 249

Query: 244 NPREALIRFGNVPIKNIENAIISLNLS-------KTGKLKEAAFNLFNYMKIADDSGASS 296
            PR        V    +  A     L                A  L+  ++  D    + 
Sbjct: 250 LPRALAAAPAGVRQAVVALAPAPAGLPAEVHWRMAPADPARYAQALYALLRELDRQAYAR 309

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P  G   A+N+R+ RAAA
Sbjct: 310 ILVEQPPRSGDWDAVNDRIGRAAA 333


>gi|253744903|gb|EET01038.1| SUA5 protein [Giardia intestinalis ATCC 50581]
          Length = 370

 Score =  254 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 166/371 (44%), Gaps = 55/371 (14%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T S  + +A   +  G  +AIPTETVYGLA D+ + TA  +++ +K+RPA +PLI
Sbjct: 4   RILGTTQSELI-EAAGAIQCGELVAIPTETVYGLAADALSNTACAKIFALKRRPANDPLI 62

Query: 62  CHVSDISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            H+S +S +   A     + P+   LA  FWPGPLT+VL       +    TA  +T   
Sbjct: 63  VHISSVSQLSMVAVLSVDLSPIVDILATAFWPGPLTMVLPAAPC--VPSTVTAGSQTIGV 120

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + +IE    PLA PSAN  G IS T  + + +  I  ++ LIIDGG   +G+
Sbjct: 121 RMPRHSVARTIIELAARPLAAPSANMFGSISPTRAEDVATEFIESDL-LIIDGGPCNVGI 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI------SVELE------YCVDETSTPQSPG 224
           EST++ +  E  + ILR G +  + L+  +       V +E        +       SPG
Sbjct: 180 ESTVL-LIAEBCLTILRRGQVTEQMLEAVLMENALSHVRIEARALSMSSIQANEVVPSPG 238

Query: 225 MLKSHYAPRSQVRLRA-------------------------------IHVNPREALIRFG 253
               HY+P++   L                                   + P     R  
Sbjct: 239 QFLRHYSPQTPCYLVMKGGPALPGAVRTTLPARLNGFVMVLDCNPALAELGPDAIFTRLA 298

Query: 254 NVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAIN 312
           ++  +  E A + L +     L+  A  LF  ++  D  G + I      P  GL  A+ 
Sbjct: 299 DILPEGTEPAQL-LRVYSAPTLEAVAQGLFGALRQVDRLGPACILILPPEPVRGLAGALL 357

Query: 313 NRLERAAAPRN 323
           +RL RAA+ R 
Sbjct: 358 DRLFRAASGRW 368


>gi|33595873|ref|NP_883516.1| hypothetical protein BPP1200 [Bordetella parapertussis 12822]
 gi|33565952|emb|CAE36502.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 350

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 140/324 (43%), Gaps = 25/324 (7%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L AG   A PTETVYGL  D+ NP A+ R+Y  K RP+ +P+I H++    V   AS  
Sbjct: 19  CLLAGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDV 78

Query: 78  P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY--GH 133
           P  +  L + FWPGPLTL+L            +    +   R P     + L+  +  G 
Sbjct: 79  PAAARQLIQAFWPGPLTLILKRAPHIGAA--VSGGQDSIGIRCPSHPVAQALLRAFAAGK 136

Query: 134 P-----LAIPSANRSGQISITNVKHILSSSICKEIPL--IIDGGISKIGLESTIVNVQCE 186
           P     +A PSAN  G +S T  +H+ +    +      ++DGG +++G+ESTI+++   
Sbjct: 137 PNGQGGVAAPSANTFGHVSPTRAEHVRAEFPREVAAGMPVLDGGDAEVGIESTIIDLSRL 196

Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
            +     +LRPG +    +   + + +             G LK+HYAPR+ + L     
Sbjct: 197 DQGVGPVLLRPGHISAAQVAAVLGMPVARPDAAAPRA--SGTLKAHYAPRTPLELLDAAQ 254

Query: 244 NPREALIRFGNVPIKNIENAIISLNLS-------KTGKLKEAAFNLFNYMKIADDSGASS 296
            PR        V    +  A     L                A  L+  ++  D    + 
Sbjct: 255 LPRALAAAPAGVRQAVVALAPAPAGLPAEVHWRMAPADPARYAQALYALLRELDRQAYAR 314

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P  G   A+N+R+ RAAA
Sbjct: 315 ILVEQPPRSGDWDAVNDRIGRAAA 338


>gi|148361313|ref|YP_001252520.1| SUA5/yciO/yrdC family transporter:Sua5/YciO/YrdC/YwlC family
           transporter protein [Legionella pneumophila str. Corby]
 gi|296108653|ref|YP_003620354.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
 gi|148283086|gb|ABQ57174.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Legionella pneumophila str. Corby]
 gi|295650555|gb|ADG26402.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
          Length = 322

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 106/331 (32%), Positives = 161/331 (48%), Gaps = 15/331 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I++      L +A   L  G P+AIPTETVYGLA    N  AIR ++E+K RP  +PL
Sbjct: 1   MSIITTN----LNRAIHDLQQGKPVAIPTETVYGLAAPINNNAAIRAVFEMKSRPLNHPL 56

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I H++    +      V   +  LA  FWPGPLTLV        I+PL T    T   R 
Sbjct: 57  IVHIASNWDLHDLVEEVPEYAHQLAGKFWPGPLTLVF-HCKKDQINPLITGGQSTIAIRC 115

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+KL++    P+  PSAN  G+IS T   H+   S       I+DGG  ++G+ES
Sbjct: 116 PDHPLTQKLLQKLNIPVVAPSANPFGKISPTTALHV-KQSFNDAELTILDGGRCRVGIES 174

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
           TIV+       +ILR G ++ +T+   I++    C  + +  + PG L SHY P+  +  
Sbjct: 175 TIVDATNPDSYQILRHGIIDEKTIAETIAIG---CSTQKNDIRVPGKLDSHYQPQKTLYY 231

Query: 239 --RAIHVNPREALIRFGNVPIKNIENAIISLNL-SKTG-KLKEAAFNLFNYMKIADDSGA 294
             +   ++      +     I N +   +  NL    G   +++A++L+  +++AD S A
Sbjct: 232 FDQYETLSEFCQKRKGTVYVIANRQPPGVETNLFHPLGMHPEKSAYDLYYQLRLADTSDA 291

Query: 295 SSIAFSSIPNHGLGIAINNRLERAAAPRNQS 325
             IA    PN      +  R+ +A  P +Q 
Sbjct: 292 ICIAIELPPNTSEWQGVRERILKAGFPYSQQ 322


>gi|241662102|ref|YP_002980462.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D]
 gi|240864129|gb|ACS61790.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D]
          Length = 337

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/335 (28%), Positives = 152/335 (45%), Gaps = 30/335 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            ++  +  L +A   L+AG  +A PTETVYGL  D+ NP AI ++Y  K RP+ +P+I H
Sbjct: 9   YNMPSAERLDEAARRLEAGELVAFPTETVYGLGADAENPQAIAKIYAAKGRPSNHPVIVH 68

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V D + +   A   P ++L L + FWPGPLTL+L       I         +   R P  
Sbjct: 69  VVDGADISYWADDVPGIALQLIEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSH 126

Query: 123 FTKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
              + +    +     +A PSAN+ GQ+S T  +H+       +   +++G    +G+ES
Sbjct: 127 PVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIES 184

Query: 179 TIVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++    +     +LRPG +  E ++R    EL    D  +   S G LK+HYAPR+ 
Sbjct: 185 TIIDLSRLDQGIGPVLLRPGAITPEDIERVTG-ELPAAPDAAAPRAS-GTLKAHYAPRTP 242

Query: 236 V----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           +          RL A+  + R   +          +  +     +       A       
Sbjct: 243 LYLLSAADVPARLAALPADKRIVWLGAPVALRDGCDQRVAPATPAAYANALYALL----- 297

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +  D  G  +I   ++ +     A+N+RL RAAA
Sbjct: 298 -RELDRGGYDAIWVETLADTPAWAAVNDRLRRAAA 331


>gi|24214909|ref|NP_712390.1| putative translation factor Sua5 [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24195936|gb|AAN49408.1| putative translation factor Sua5 [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 315

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 156/320 (48%), Gaps = 18/320 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS +  +A + L  G  +  PTETVYG+   + +  A +R+Y++K RP+ NPLI HV+
Sbjct: 10  ITDSTS--EAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVA 67

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           + S +K    +D  +  + +   PGP+T +    +      L TA L +   R+P   T 
Sbjct: 68  NFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQN----LFTAGLDSVAIRIPSNPTA 123

Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              ++    P+A PSAN SG+ S+T +++IL   I K +  I+ G   +IG+EST+V+  
Sbjct: 124 LGFLKFCKIPVAAPSANFSGKPSLTKIEYILEEFIGK-VDCILKGEEPQIGIESTVVDFI 182

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAI 241
            +  + +LRPG ++   L   +  ++    +D+ S  TP SPG+   HY+P  +V     
Sbjct: 183 SKPPI-LLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYRHYSPNCKV---IF 238

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
             + +     F  +      N++  + +S     KE    ++++    D  G +      
Sbjct: 239 KNSLKGIPKEFAQIGFHFESNSVYQVLVSSN---KEYMKEIYSFFVECDRRGITEAWCEI 295

Query: 302 IPNHGLGIAINNRLERAAAP 321
                    + NR+ +AA+ 
Sbjct: 296 PKEEKWKEVLINRISKAASK 315


>gi|45657585|ref|YP_001671.1| hypothetical protein LIC11719 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600824|gb|AAS70308.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 315

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/320 (27%), Positives = 156/320 (48%), Gaps = 18/320 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS +  +A + L  G  +  PTETVYG+   + +  A +R+Y++K RP+ NPLI HV+
Sbjct: 10  ITDSTS--EAAKILLKGGLVVFPTETVYGIGASAFDIDACKRIYKVKNRPSDNPLILHVA 67

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           + S +K    +D  +  + +   PGP+T +    +      L TA L +   R+P   T 
Sbjct: 68  NFSSLKDCGEIDDRANLVFQKLSPGPITGIFKKKNQN----LFTAGLDSVAIRIPSNPTA 123

Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              ++    P+A PSAN SG+ S+T +++IL   I K +  I+ G   +IG+EST+V+  
Sbjct: 124 LGFLKFCKIPVAAPSANFSGKPSLTKIEYILEEFIGK-VDCILKGEEPQIGIESTVVDFI 182

Query: 185 CEKKVRILRPGGLEIETLKRAI-SVELEYCVDETS--TPQSPGMLKSHYAPRSQVRLRAI 241
            +  + +LRPG ++   L   +  ++    +D+ S  TP SPG+   HY+P  +V     
Sbjct: 183 SKPPI-LLRPGFIDKNDLSEILPDLQEMKSLDKNSYTTPISPGLKYKHYSPNCKV---IF 238

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
             + +     F  +      N++  + +S     KE    ++++    D  G +      
Sbjct: 239 KNSLKGIPKEFAQIGFHFESNSVYQVLVSSN---KEYMKEIYSFFVECDRRGITEAWCEI 295

Query: 302 IPNHGLGIAINNRLERAAAP 321
                    + NR+ +AA+ 
Sbjct: 296 PKEEKWKEVLINRISKAASK 315


>gi|322699100|gb|EFY90864.1| translation initiation protein Sua5 [Metarhizium acridum CQMa 102]
          Length = 437

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/260 (34%), Positives = 133/260 (51%), Gaps = 16/260 (6%)

Query: 12  LRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           L  A E+L     P+A PTETVYGL  D+    +++ +Y  K RP+ NPLI HV D+ M+
Sbjct: 43  LEPAAEYLRTKDTPVAFPTETVYGLGADATRSASVKGIYSAKGRPSDNPLIVHVCDLDML 102

Query: 71  KKHA------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           +         ++      L K FWPGPLT++L     + + P  TA L T   R+P    
Sbjct: 103 RTLLGSRGEDAIPARYQSLMKRFWPGPLTILLPNPDPSPLAPEVTAGLATFGVRMPSSPL 162

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              LI+  G PLA PSAN S + S T  +H+    +   I +I+DGG  ++G+EST+V+ 
Sbjct: 163 ALTLIKLAGVPLAAPSANASTKPSPTMAQHV-KDDLDGRIEMILDGGSCRVGVESTVVDG 221

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVR 237
            C+    +LRPGG+ I+ L+     E       +   +  + P++PGM   HY+PR++V 
Sbjct: 222 LCDPPA-VLRPGGVAIDELRSCPGWEDVVKAYKDQSEEGKAAPRAPGMKYKHYSPRARVV 280

Query: 238 LRAIHVNPREALIRFGNVPI 257
           L         A I   +   
Sbjct: 281 LYESSYENGRAGIVKADAEA 300



 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
             +     +  G +  +  E      ++S   + +  A  LF+ ++  D  GA  I    
Sbjct: 354 QHDEMPYDVYAGELQNEQGETIGQVFDISLGQEHRGIAQGLFSALRELDRRGADVIFVDG 413

Query: 302 IPNH-GLGIAINNRLERAAA 320
           I +   +  A+ NRL +AA+
Sbjct: 414 IDDELDIAAAVMNRLRKAAS 433


>gi|300175748|emb|CBK21291.2| unnamed protein product [Blastocystis hominis]
          Length = 364

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 94/353 (26%), Positives = 161/353 (45%), Gaps = 36/353 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+  T  N L    + L  G  ++ PTETVYGL  ++ N  A+  +++ K RP  +P+I
Sbjct: 7   QILKPTPENFLF-CSQVLHNGGLVSFPTETVYGLGANALNRDAVCDIFKAKNRPFNDPVI 65

Query: 62  CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HV      +++  V          LA  FWPGPLT+V+   +   +    +A      F
Sbjct: 66  VHVLSEEDAERYIDVSNEERRIFHSLATSFWPGPLTIVM--KAKEILPKELSAGTGKVGF 123

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG--ISKI 174
           R P     ++L+   G P+A PSAN+ G IS T  +H+ S  +      IIDGG  +  +
Sbjct: 124 RCPSQPLARELLRVSGLPIAAPSANKFGHISPTRAEHVYSD-LSDWPVQIIDGGDIVCDV 182

Query: 175 GLESTIVNVQCEK-KVRILRPGGLEIETLKRAIS---------VELEYCVDE-TSTPQSP 223
           G+EST++ + CEK ++ + R GG+    +   +            +++   E      +P
Sbjct: 183 GIESTVIGIDCEKQQIVLFRRGGVSEHAIMSCLQENGMAWSVWEPVKHVAMEMKEAQVAP 242

Query: 224 GMLKSHYAPRSQVRLRAIHVNPRE-----------ALIRFGNVPIKNIENAIISLNLSKT 272
           G L +HYAP     L  +                  ++ F  +     E  +  L+LS+ 
Sbjct: 243 GQLITHYAPYCDTFLAEVDPKAMMPQIVRERIESTVVLDFAGMLEGYRERCLKFLSLSEK 302

Query: 273 GKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAAPR 322
           G + EA  N++  ++ A+   G   I  +S+      L +++ +R+ RA + +
Sbjct: 303 GDVMEAMKNIYGKLREAERVEGVKLILLASLGQRKEELALSVMDRMVRATSGK 355


>gi|159111922|ref|XP_001706191.1| SUA5 protein [Giardia lamblia ATCC 50803]
 gi|157434285|gb|EDO78517.1| SUA5 protein [Giardia lamblia ATCC 50803]
          Length = 406

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 162/365 (44%), Gaps = 53/365 (14%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  + L  A   L  G  +AIPTETVYGLA D+ +  A  +++ +K+RPA +PLI H+S 
Sbjct: 45  TTQSELADAAGALQRGELVAIPTETVYGLAADALSEAACAKIFTLKQRPANDPLIVHISH 104

Query: 67  ISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           IS +   A     +  +   LA  FWPGPLT+VL       +  + TA  +T   R+P  
Sbjct: 105 ISQLPMVAVVSVELSSIVDALAAAFWPGPLTMVLPAAPC--VPSIVTAGSQTIGVRMPRH 162

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                ++E    PLA PSAN  G IS T  + + +  +  ++ LIIDGG   IG+EST++
Sbjct: 163 PVACAILELAARPLAAPSANMFGSISPTQAEDVAAEFVNSDL-LIIDGGRCDIGIESTVL 221

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVE-LEYCVDE----------TSTPQSPGMLKSHY 230
            +  +  + ILR G +  E L   +    L+Y   E          T    SPG    HY
Sbjct: 222 -LVEKDCLTILRRGQVNEEMLVATLPTNALDYIRVETRALSSSGLQTKAVSSPGQFLRHY 280

Query: 231 APRSQVRLRA-------------------------------IHVNPREALIRFGNVPIKN 259
           +PR++  L                                   + P   L     +  + 
Sbjct: 281 SPRTECYLVMKGGPMLPGAVRAILPARLDGFVVILDCNPALAELEPDALLRSLAGLLPEG 340

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERA 318
            E A I L       L+ AA +LF  ++ AD  G + I      P  GL  A+ +RL RA
Sbjct: 341 TEPARI-LRAYSVPTLEAAAQSLFETLRRADKLGPACILALPPEPARGLADALLDRLFRA 399

Query: 319 AAPRN 323
           A+ R 
Sbjct: 400 ASGRW 404


>gi|187927597|ref|YP_001898084.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J]
 gi|187724487|gb|ACD25652.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J]
          Length = 337

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 30/335 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            ++  +  L +A   L+AG  +A PTETVYGL  D+ +P+AI ++Y  K RP+ +P+I H
Sbjct: 9   YTMPSAERLDEAARRLEAGELVAFPTETVYGLGADAESPSAIAKIYAAKGRPSNHPVIVH 68

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V D + +   A   P ++L L + FWPGPLTL+L       I         +   R P  
Sbjct: 69  VVDGADISYWADDVPGIALQLIEAFWPGPLTLILKRAPH--IPAAVAGGQDSIGLRCPSH 126

Query: 123 FTKKLI----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
              + +    +     +A PSAN+ GQ+S T  +H+       +   +++G    +G+ES
Sbjct: 127 PVAQALLSRFKRGRGGIAAPSANKFGQVSPTTAQHVRDEF--GDAVFVLEGDGVDVGIES 184

Query: 179 TIVNVQCEKK---VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           TI+++    +     +LRPG +  E ++R    EL    D  +   S G LK+HYAPR+ 
Sbjct: 185 TIIDLSRLDQGIGPVLLRPGAITPEDIERVTG-ELPAAPDAAAPRAS-GTLKAHYAPRTP 242

Query: 236 V----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           +          RL A+  + R   +          +  +     +       A       
Sbjct: 243 LYLLSAADVSARLAALPADKRIVWLGAPVALRDGCDQRVAPATPAAYANALYALL----- 297

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            +  D  G  +I   ++ +     A+N+RL RAAA
Sbjct: 298 -RELDRGGYDAIWVETLADTPAWAAVNDRLRRAAA 331


>gi|258539383|ref|YP_003173882.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus Lc 705]
 gi|257151059|emb|CAR90031.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus Lc 705]
          Length = 322

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 15/287 (5%)

Query: 47  RLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP 106
           ++Y  K RP+ NPLI  V+D +MV ++A++ P +  L   FWPGPLT++L++L    +  
Sbjct: 27  KVYAAKGRPSDNPLIVTVADAAMVSQYATITPDAAKLMDTFWPGPLTIILNILPGR-LSM 85

Query: 107 LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
             T  L+TA FR P    T+KLI T G P+  PSAN SG+ S T   H+L   +  +I  
Sbjct: 86  KVTGGLQTAAFRNPDDALTRKLIATAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAG 144

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL--EYCVDETSTPQSP 223
           ++D G +++G+ESTI+++       ILRPG +    L+  +       + V +   P++P
Sbjct: 145 VLDDGPTRVGVESTIIDLTVTPPA-ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAP 203

Query: 224 GMLKSHYAPRSQVRLRAIHVNPREALIR-------FGNVPIKNIENAIISLNLSKTG-KL 275
           GM   HYAP +QV +        +A+         FG +   +I      +     G  +
Sbjct: 204 GMKYKHYAPAAQVVVVDTIDQFDDAVAWAKKTGQTFGLLATDSILAHFPDVPSYSLGQDI 263

Query: 276 KEAAFNLFNYMKIAD-DSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A   LF  ++  D     + +   +  +  L  A  NRL ++A  
Sbjct: 264 TSATHALFAGLRWFDLHPDVTLVLAQAFSHSELSAAYMNRLLKSAGN 310


>gi|124265490|ref|YP_001019494.1| translation factor SUA5 [Methylibium petroleiphilum PM1]
 gi|124258265|gb|ABM93259.1| translation factor SUA5 [Methylibium petroleiphilum PM1]
          Length = 335

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 105/345 (30%), Positives = 158/345 (45%), Gaps = 34/345 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +      A+ +A   L AG  +A PTETVYGL   + +  A+ +++  K RP  +PL
Sbjct: 1   MPRLDGHAPEAVAEAARLLAAGHLVAFPTETVYGLGARADDDAAVAKIFAAKGRPTDHPL 60

Query: 61  ICHV-SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV          A + PL+  L   FWPG LT+++   +       ++    +   R 
Sbjct: 61  IVHVADAAGAQAFAAELPPLAQRLIAAFWPGTLTVIVSRRAGVAAA--ASGGQPSIGLRC 118

Query: 120 PCGFTKKLIETY----GHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
           P     + +       G P +A PSANR G++S T   H+          +++DGG  ++
Sbjct: 119 PSHPVAQALLRSAAALGVPGVAGPSANRYGRVSPTRAAHVEGEF--DAALVVLDGGDCEV 176

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD--ETSTPQSPGMLKSHYAP 232
           G+ESTIV+      V +LRPG L  E ++ A    L    D    S P++PG L SHYAP
Sbjct: 177 GIESTIVDCTRGHPV-LLRPGVLPRERIEAAAGERLLDAADALAGSAPRAPGTLASHYAP 235

Query: 233 RSQVRLR-------AIHVNPREALIRFGNVPIKNIENAIISLNLSK---------TGKLK 276
           R+ +RL        A+ V P +AL + G   +     A+ S ++S               
Sbjct: 236 RATLRLMPATALRTALEVLPTDALPKRGGSRL-----AVYSRSVSPPSRLTARRMPDDPA 290

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
            AA  LF+ ++  DD G   I     P       + +RL+RAAAP
Sbjct: 291 AAAHELFSVLRELDDEGVQLIWVEEPPAGPAWEGVRDRLQRAAAP 335


>gi|254497395|ref|ZP_05110195.1| Sua5/YciO/YrdC/YwlC family protein [Legionella drancourtii LLAP12]
 gi|254353374|gb|EET12109.1| Sua5/YciO/YrdC/YwlC family protein [Legionella drancourtii LLAP12]
          Length = 323

 Score =  251 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 105/330 (31%), Positives = 159/330 (48%), Gaps = 23/330 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS--- 65
           +  +  A   L AG P+AIPTETVYGLA    N  AI+ ++ +K+RP  +PLI HV+   
Sbjct: 5   TTDIALAVHDLQAGKPVAIPTETVYGLAAPINNEQAIKAVFAMKERPLNHPLIVHVAANW 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           D+S +     +   +  L K FWPGPLTLVL    T  I+PL      T   R P     
Sbjct: 65  DLSTL--VTDIPAYANLLIKKFWPGPLTLVLRCNPT-QINPLINGGQTTVAIRCPAHPLA 121

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L+     P+  PSAN  G++S T   H+   S  ++   I+DGG   +G+ESTIV+  
Sbjct: 122 QELLTQLRIPVVAPSANPFGKVSPTTALHV-QESFPQQALTILDGGRCTVGIESTIVDAS 180

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
             +  +ILR G ++ +++   I+       D+ S  + PG L SHY P+  +   A + +
Sbjct: 181 NPEHYQILRHGLIDEQSIAAVITAP---ARDQPSRIRVPGKLDSHYQPQKTLYYFADYEH 237

Query: 245 PREALIRFGNVPIKNIENAIISLNLSK--------TGKLKEAAFNLFNYMKIADDSGASS 296
               L +F       I         +           + ++AAF+L+  ++ AD S A  
Sbjct: 238 ----LAQFCQQSSAEIYAIASKCPATVHHEHYHPLATQPEQAAFDLYFQLRAADASNAQC 293

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           IA    P +GL   I  R+ +A  P    Q
Sbjct: 294 IAIELPPENGLWQGIRERILKAGIPYAAEQ 323


>gi|46107246|ref|XP_380682.1| hypothetical protein FG00506.1 [Gibberella zeae PH-1]
          Length = 433

 Score =  251 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 91/266 (34%), Positives = 136/266 (51%), Gaps = 18/266 (6%)

Query: 10  NALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL  A   L     P+A PTETVYGL  D+    +++ +Y  K RP+ NPLI HV D+ 
Sbjct: 40  KALEDAAHELRTTDTPVAFPTETVYGLGADATRTPSVKGIYSAKGRPSDNPLISHVCDLD 99

Query: 69  MVKKHA--------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           M++++          +      L + FWPGPLT++L     + + P  TA LKT   R+P
Sbjct: 100 MLRQYIGHTDETQDPIPERYRALIERFWPGPLTILLPNPVPSKLAPEVTAGLKTFGVRMP 159

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI+  G PLA PSAN S + S T  +H+    +   I LI+DGG  ++G+EST
Sbjct: 160 SSPLALSLIKLAGVPLAAPSANASTKPSPTAAQHV-KDDLDGRIELILDGGHCQVGVEST 218

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPR 233
           +V+  C+  V +LRPGGL ++ L+     E       +   +  + P++PGM   HY+P+
Sbjct: 219 VVDGLCDPPV-VLRPGGLGMDELRTCPGWENATIAYKDKSEEGKAAPRAPGMKYKHYSPK 277

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKN 259
           + V L     +     I   N  + N
Sbjct: 278 ATVVLYESSFDKGGDGIALSNFEVSN 303



 Score = 69.3 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSSIPNH-GLGIAINNRLERAAA 320
           +  A  LF  ++  D  GA +I    I +   +  A+ NRL +AA+
Sbjct: 384 EGIARGLFAALRDFDRRGADTIFVDGIEDKSDIAAAVMNRLRKAAS 429


>gi|312222358|emb|CBY02298.1| hypothetical protein [Leptosphaeria maculans]
          Length = 543

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 134/261 (51%), Gaps = 26/261 (9%)

Query: 2   QIMSITDSNALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           Q +   D  +L++A  E L+   P+A PTETVYGL  D+   +A++ ++  K RPA NPL
Sbjct: 132 QYVEGKDYESLKRAAGELLNTDTPVAFPTETVYGLGADATRSSAVKAIFAAKGRPADNPL 191

Query: 61  ICHVSDISMVKKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104
           I H+  +  ++   S                +  +   + + FWPGP+T++L    ++ +
Sbjct: 192 IVHIHSLRQLRAILSGGKENLKGAVGPEDDPIPAIYRPIIERFWPGPITIILPAPDSSML 251

Query: 105 HPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163
            P  TA L T   R+P       L+   G PLA PSAN S + S T  +H+    + + I
Sbjct: 252 APEVTAGLPTFGARMPRSILALSLLRLCGRPLAAPSANASTRPSPTAAEHVF-DDLQERI 310

Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDET 217
             IIDGG  ++G+EST+V+        ILRPGG+ +E L++    E       +      
Sbjct: 311 RTIIDGGPCEVGVESTVVDGLSS-PPSILRPGGITVEQLRQCPGWENVVVGYKDSQEGGA 369

Query: 218 STPQSPGMLKSHYAPRSQVRL 238
           S P++PGM   HY+P+++V L
Sbjct: 370 SKPRAPGMKYRHYSPKAKVIL 390



 Score = 74.3 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN---HGLGIAINNRLERAA 319
            ++      ++ A  LF+ ++  D  GA  I    I +     +  A+ NRL +AA
Sbjct: 484 WDIYLGADTQDVARGLFSALRELDKKGADVIYVEGIDDKAGDDIAAAVMNRLRKAA 539


>gi|94500117|ref|ZP_01306651.1| hypothetical protein RED65_13317 [Oceanobacter sp. RED65]
 gi|94427690|gb|EAT12666.1| hypothetical protein RED65_13317 [Oceanobacter sp. RED65]
          Length = 352

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/334 (26%), Positives = 158/334 (47%), Gaps = 23/334 (6%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++    +   ++A   L  G  +A+PTETVYGLA D+RN  A+  ++E K RP  +PLI
Sbjct: 4   KLLKAHSAKDRQQAGAILKQGGLVAVPTETVYGLAADARNDIALASIFEAKGRPVDHPLI 63

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            H+++ + ++K A  V  ++  L + FWPG LTLVL       +  + T  L T   R+P
Sbjct: 64  LHIANSTELEKWARDVPHIAQSLVEAFWPGALTLVL--KKAEGVSDILTGGLDTVAIRMP 121

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  ++ T+   +A PSAN   ++S T   H+++  + + I  ++DGG  + G+EST
Sbjct: 122 NQPALLDILRTHELIVAAPSANPYEKLSPTQAHHVMN-GMGELIDAVVDGGACEQGIEST 180

Query: 180 IVNVQCEKK--VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR 237
           I+++    +   R+LRPG +    ++  +   +    +     +  G  K HY P++ + 
Sbjct: 181 ILDISDYPRTSPRVLRPGPISASQIEAVLDQTVLQPDNHNE--KVSGNKKVHYRPKATLV 238

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAII------------SLNLSKTGKLKEAAFNLFNY 285
           L         ALIR G   +    + II             + L      +  A + ++ 
Sbjct: 239 LCETEQLD--ALIRNGVAGVFLYHSEIIETALNDSQLHGDQIALRLPADHQGYAQSWYST 296

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +   D     ++    +PN+     I NR+ RAA
Sbjct: 297 LHEVDCLMPDTVYTECVPNNTEWSGIANRIARAA 330


>gi|154281557|ref|XP_001541591.1| hypothetical protein HCAG_03689 [Ajellomyces capsulatus NAm1]
 gi|150411770|gb|EDN07158.1| hypothetical protein HCAG_03689 [Ajellomyces capsulatus NAm1]
          Length = 490

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 36/279 (12%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100
              +++                             + P+   L   FWPGPLT++L   +
Sbjct: 117 KEQLQRLLQPHSSSPSRGEYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L+T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213
              I +I+DGG   +G+EST+V+        +LRPGG+ IE ++     E       +  
Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLL-YPPAVLRPGGVGIEEIRACPGWEDVQIGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           +     P++PGM   HY+P+++V L     +      + 
Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVLFEAGQDVEAVKSKL 333



 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
           +  +++         A  LF+ ++  D+   S I    I +    L  AI NRL +AA
Sbjct: 429 LFDIDIGPDTD--SIARGLFSALRGLDEKNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484


>gi|225563151|gb|EEH11430.1| translation initiation protein Sua5 [Ajellomyces capsulatus G186AR]
          Length = 490

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 36/279 (12%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEELRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100
              +++                             + P+   L   FWPGPLT++L   +
Sbjct: 117 REQLQRLLQPHSSSPSQGGYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L+T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213
              I +I+DGG   +G+EST+V+        +LRPGG+ IE ++     E       +  
Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEDVQIGYEDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           +     P++PGM   HY+P+++V L     +      + 
Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVLFEAGQDVETVKSKL 333



 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
           +  +++         A  LF+ ++  D+   S I    I +    L  AI NRL +AA
Sbjct: 429 LFDIDIGPDTD--SIARGLFSALRGLDEKNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484


>gi|302923042|ref|XP_003053592.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734533|gb|EEU47879.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 431

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/265 (33%), Positives = 135/265 (50%), Gaps = 18/265 (6%)

Query: 10  NALRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL KA   L     P+A PTETVYGL  D+    +++ +Y  K RP+ NPLI HV D+ 
Sbjct: 40  KALEKAAHELRTTPTPVAFPTETVYGLGADATRSPSVKGIYSAKGRPSDNPLISHVCDLE 99

Query: 69  MVKKHA--------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           M++++          +      L + FWPGPLT++L     T + P  TA LKT   R+P
Sbjct: 100 MLREYIGQIEGGQDPIPSRYRALIERFWPGPLTILLPNPQPTKLAPEVTAGLKTFGVRMP 159

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI+  G PLA PSAN S + S T  +H++   +   I LI+DGG   +G+EST
Sbjct: 160 SSPLALSLIKLAGVPLAAPSANASTKPSPTTAQHVM-DDLRGRIELILDGGQCAVGVEST 218

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLKSHYAPR 233
           +V+  C+  V +LRPGG+ ++ L+     E       +   +  + P++PGM   HY+P+
Sbjct: 219 VVDGLCDPPV-VLRPGGIGLDELRSCPGWEGAVIAYKDQSEEGKAAPRAPGMKYKHYSPK 277

Query: 234 SQVRLRAIHVNPREALIRFGNVPIK 258
           ++V L           +    +   
Sbjct: 278 ARVVLYESSCAKGATGVASSELATA 302



 Score = 76.6 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH-GLGIAI 311
           G++  +N +     L++      +  A  LF+ ++  D  GA +I    I +   +  A+
Sbjct: 359 GDLLDENEKPIGKILDIDLGRDTEGIARGLFSALREFDRQGADTIFVEGIEDRIDIAAAV 418

Query: 312 NNRLERAAA 320
            NRL +AA+
Sbjct: 419 MNRLRKAAS 427


>gi|325093106|gb|EGC46416.1| translation initiation protein Sua5 [Ajellomyces capsulatus H88]
          Length = 490

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 134/279 (48%), Gaps = 36/279 (12%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100
              +++                             + P+   L   FWPGPLT++L   +
Sbjct: 117 REQLQRLLQPHSSSPSQGGYGSRTEGSQQGGKRNFIPPIYEPLISKFWPGPLTIILPNQT 176

Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L+T   R+P     + LI     PLA PSAN S + S T  +H+  + +
Sbjct: 177 PSPLAPEVTSTLRTFGVRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADL 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213
              I +I+DGG   +G+EST+V+        +LRPGG+ IE ++     E       +  
Sbjct: 236 QGRINMILDGGPCGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEDVQIGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRF 252
           +     P +PGM   HY+P+++V L     +      + 
Sbjct: 295 LQGKEVPLAPGMKYKHYSPKAKVVLFEAGQDVETVKSKL 333



 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
           +  +++         A  LF+ ++  D+   S I    I +    L  AI NRL +AA
Sbjct: 429 LFDIDIGPDTD--SIARGLFSALRGLDEKNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484


>gi|320040093|gb|EFW22027.1| translation initiation protein Sua5 [Coccidioides posadasii str.
           Silveira]
          Length = 461

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 26/253 (10%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75
           P+A PTETVYGL  D+    A++ +Y  K+RP+ NPLI HVS    +++           
Sbjct: 69  PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTSN 128

Query: 76  ---------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
                    + P+   L + FWPGPLT+++     + + P  T+NL T   R+P     +
Sbjct: 129 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 188

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    PLA PSAN S + S T  +H+  + +   I +I+DGG   +G+EST+V+   
Sbjct: 189 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGSCGVGVESTVVD-GL 246

Query: 186 EKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                ILRPGG+ IE ++     E       +  +    TP++PGM   HY+PR++V L 
Sbjct: 247 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVLF 306

Query: 240 AIHVNPREALIRF 252
                    + R 
Sbjct: 307 ETGQEMPSVVRRI 319



 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAA 319
            A  LF+ ++  D++  S+I    I +    L  AI NRL +AA
Sbjct: 412 IARGLFSALRSLDENDVSTIYVEGIADTDGDLAAAIMNRLRKAA 455


>gi|303312189|ref|XP_003066106.1| SUA5 protein, putative [Coccidioides posadasii C735 delta SOWgp]
 gi|240105768|gb|EER23961.1| SUA5 protein, putative [Coccidioides posadasii C735 delta SOWgp]
          Length = 461

 Score =  249 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 26/253 (10%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75
           P+A PTETVYGL  D+    A++ +Y  K+RP+ NPLI HVS    +++           
Sbjct: 69  PVAFPTETVYGLGADATRSAAVQGIYRAKQRPSDNPLIVHVSSREQLERLLRPPGCPTSN 128

Query: 76  ---------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
                    + P+   L + FWPGPLT+++     + + P  T+NL T   R+P     +
Sbjct: 129 QNSLQTSSLIPPIYEPLIERFWPGPLTILIPNPKHSPLAPEVTSNLSTFGVRMPSSSLAR 188

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+    PLA PSAN S + S T  +H+  + +   I +I+DGG   +G+EST+V+   
Sbjct: 189 LLIKLADRPLAAPSANASTKPSPTTAQHVY-ADLHGRIDIILDGGSCGVGVESTVVD-GL 246

Query: 186 EKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
                ILRPGG+ IE ++     E       +  +    TP++PGM   HY+PR++V L 
Sbjct: 247 NHPPAILRPGGVGIEEIRACRGWEDVRVGYKDGALPGKMTPRAPGMKYRHYSPRAKVVLF 306

Query: 240 AIHVNPREALIRF 252
                    + R 
Sbjct: 307 ETGQEMPSVVRRI 319



 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 278 AAFNLFNYMKIADDSGASSIAFSSIPNH--GLGIAINNRLERAA 319
            A  LF+ ++  D++  S+I    I +    L  AI NRL +AA
Sbjct: 412 IARGLFSALRSLDENDVSTIYVEGIADTDGDLAAAIMNRLRKAA 455


>gi|171915109|ref|ZP_02930579.1| Sua5/YciO/YrdC/YwlC family protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 329

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 110/332 (33%), Positives = 164/332 (49%), Gaps = 23/332 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L AG  +A+PTETVYGLA D+ N  A+ +++  K+RPA +PLI H+     + 
Sbjct: 1   MDEAVRALSAGEVVALPTETVYGLAADALNADAVAKVFAAKERPAFDPLIVHLPHKKDLD 60

Query: 72  KHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
             A V      +   + + FWPGPLT+VL       +  L TA + T   R        +
Sbjct: 61  LVAEVPEDIAEVVKKITEKFWPGPLTIVLP--KKAVVPDLVTAGMPTVAVRASNHLVFNR 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +  +   PLA PSANR G IS T+   +  + +   IPLI+D G +  GLESTI+ ++  
Sbjct: 119 VARSLDKPLAAPSANRFGSISPTSASAV-QAELDGRIPLILDAGATMHGLESTIIRIEAA 177

Query: 187 KK---VRILRPGGLEIETLKRAISVELEYCV--DETSTPQSPGMLKSHYAPRSQVRLRAI 241
           K    + ILRPG +  + LK      L   +  +E    ++PG L SHYAPR+ +RL   
Sbjct: 178 KPKARIIILRPGPITPDDLKPFGKPILARNLKPEEQEKLEAPGQLPSHYAPRTPLRLLES 237

Query: 242 ------HVNPREALIRFGNVP---IKNIENAIISLNLSKT-GKLKEAAFNLFNYMKIADD 291
                     + AL+ +   P     ++      + LS   GKL EAA   F  ++  D 
Sbjct: 238 PEEFTPEPGKKYALLSYRGDPDDGYSDLAEWDHVMVLSPGKGKLPEAAVRFFFALRELDK 297

Query: 292 SGASSIAFSSIPNHGLGIAINNRLERAAAPRN 323
            G   I    +P   LG+A+ +RL RA+  R+
Sbjct: 298 LGVDEIIAEPLPERELGLAMMDRLRRASVKRS 329


>gi|11498387|ref|NP_069615.1| hypothetical protein AF0781 [Archaeoglobus fulgidus DSM 4304]
 gi|2649831|gb|AAB90461.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 309

 Score =  248 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 99/321 (30%), Positives = 152/321 (47%), Gaps = 33/321 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +RKA   L AG  +A PTETVYG+  D+ N  A+RRLYEIK R    P I  V     
Sbjct: 10  EGIRKAVAVLRAGGIVAFPTETVYGMGCDATNEEALRRLYEIKGRSLNKPFIVGVWSRDY 69

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLI 128
           V K A VD  +  L + F+PGPLTLVL    +  + P   +       R+P      +L+
Sbjct: 70  VGKIAEVDERAEKLMEAFFPGPLTLVL---KSKGVMPSLLSPKGKIAVRMPAHEVPLQLM 126

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+ +PSAN SG+ S+   +H++   +   I  ++ G   K+G+ESTIV++  E  
Sbjct: 127 EMLRKPIVVPSANLSGRPSLMRWEHVV-EELGSRIDAVVKGE-CKVGVESTIVDLT-ETP 183

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVR-------LRAI 241
            ++LR G + +E++K+ + V +E   +              Y+   QV        L+ I
Sbjct: 184 AKVLRVGAVSVESIKKHVEVVVEPRKET-------------YSLSCQVYVFVGERALQRI 230

Query: 242 HVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
                EA  R   V I   +    ++ + K+   +E + NLF+ ++ A+      I    
Sbjct: 231 KEFVDEAEKRGRVVVIAREKITDETIVIGKSA--EEYSANLFSAVREAESRRPDIIVIEG 288

Query: 302 IPNHGLGIAINNRLERAAAPR 322
           + N     AI +RL R A  R
Sbjct: 289 VENE----AIMDRLRRLAGER 305


>gi|121608514|ref|YP_996321.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553154|gb|ABM57303.1| translation factor SUA5 [Verminephrobacter eiseniae EF01-2]
          Length = 348

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/330 (29%), Positives = 142/330 (43%), Gaps = 38/330 (11%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLH 82
            + +PTETVYGLA D+ N  A+ +++  K RP  +PLI HV+    +   A   P  +  
Sbjct: 23  LLGLPTETVYGLAADAGNDAAVAQIFAAKGRPRDHPLIVHVASAEGIAHFARALPAFAQA 82

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP------- 134
           LA  FWPGPLTL+L       +   +     +   R P     + L+     P       
Sbjct: 83  LADAFWPGPLTLILPRRPG--VASAAAGGQDSVGLRCPAHPVAQALLRACAAPPPEGGTD 140

Query: 135 ------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                       LA PSANR G++S T  +H+          L++DGG   +G+ESTIV+
Sbjct: 141 QGHDQGGPPIRGLAAPSANRFGRVSTTTAQHVQDEL--GAALLVLDGGPCALGIESTIVD 198

Query: 183 VQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRL--- 238
                 V +LRPG +    +  A  +  L         P++PG L +HYAPR++VRL   
Sbjct: 199 CTRGLPV-LLRPGSITRAQIAAACGIAPLSRAELPALDPRAPGTLAAHYAPRAKVRLMDA 257

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG--------KLKEAAFNLFNYMKIAD 290
           RA+  +                  A  +L +   G             A  LF  ++  D
Sbjct: 258 RALQTSLDLWAASAPAATAPMAVYARSALRMPAPGPILRRMPDDASATAQQLFAVLRSLD 317

Query: 291 DSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           D+G   I   + P       + +RL+RAAA
Sbjct: 318 DAGVPLIWIETPPATPDWEGVRDRLQRAAA 347


>gi|258574551|ref|XP_002541457.1| hypothetical protein UREG_00973 [Uncinocarpus reesii 1704]
 gi|237901723|gb|EEP76124.1| hypothetical protein UREG_00973 [Uncinocarpus reesii 1704]
          Length = 458

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 126/253 (49%), Gaps = 26/253 (10%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-------- 75
           P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HV     ++            
Sbjct: 69  PVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVHSREQLEGLLQPPKCPKSQ 128

Query: 76  ---------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
                    + P+   L + FWPGPLT+++     + + P  T+NL T   R+P     +
Sbjct: 129 QTTAQSSSLIPPIYEPLIQRFWPGPLTILIPNPPHSPLAPEVTSNLSTFGVRMPSSSLAR 188

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI     PLA PSAN S + S T  +H+ +  +   I +I+DGG   +G+EST+V+   
Sbjct: 189 LLIRLADRPLAAPSANASTKPSPTTAQHVYTD-LRGRIDIILDGGPCGVGVESTVVDGLS 247

Query: 186 EKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
            +   ILRPGG+ IE ++     E       +  +   + P++PGM   HY+P+++V L 
Sbjct: 248 -QPPAILRPGGVGIEEIRSCRGWEDVRIGYKDGALQGRTAPRAPGMKYRHYSPKAKVVLF 306

Query: 240 AIHVNPREALIRF 252
                    + R 
Sbjct: 307 ESGQPMSSVIERI 319



 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
           +++S        A  LF+ ++  D    S+I    IP     L  AI NRL +AA
Sbjct: 398 IDISLGADTHSIARGLFSALRSLDAHNVSTIYVEGIPETEGDLAAAIMNRLRKAA 452


>gi|327348880|gb|EGE77737.1| SUA5 [Ajellomyces dermatitidis ATCC 18188]
          Length = 490

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/271 (31%), Positives = 133/271 (49%), Gaps = 36/271 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKKHASVDPLSLH--------------------------LAKLFWPGPLTLVLDLLS 100
              +++       SL                           L   FWPGPLT++L   +
Sbjct: 117 REQLQRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+ +  +
Sbjct: 177 PSPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVYTD-L 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213
              I +I+DGG S +G+EST+V+        +LRPGG+ IE ++     E       +  
Sbjct: 236 QGRIDMILDGGPSGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEEVRIGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
           +     P++PGM   HY+P+++V L     +
Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVLFEAGRD 325



 Score = 69.3 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           P +     +     +   +R       N+   I   ++         A  LF+ ++  D+
Sbjct: 395 PTNPFNSSSHVTGYQSTCLRLLPSIELNLGTPIELFDIYIGPDTDSIARGLFSALRGLDE 454

Query: 292 SGASSIAFSSIPNHG--LGIAINNRLERAA 319
              S I    I +    L  AI NRL +AA
Sbjct: 455 KNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484


>gi|296813235|ref|XP_002846955.1| translation initiation protein Sua5 [Arthroderma otae CBS 113480]
 gi|238842211|gb|EEQ31873.1| translation initiation protein Sua5 [Arthroderma otae CBS 113480]
          Length = 447

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 131/259 (50%), Gaps = 26/259 (10%)

Query: 10  NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            AL +A E +      +A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS   
Sbjct: 47  TALLEAAEAIRTSDVPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSSRE 106

Query: 69  MVKKH----------------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            +++                 + +  +   + + FWPG L+++L   S   + P  TA+L
Sbjct: 107 QLERLLQTSQPSNGAIHNPTASPIPKIYEPVIEKFWPGALSIILPNPSHLPLAPEVTASL 166

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            T   R+P     + LI     P+A PSAN S + S T  +H+ +  +   I +I+DGG 
Sbjct: 167 STFAVRMPSSPLARLLIALADRPVAAPSANASTKPSPTTAQHVYTD-LQGRIDIILDGGP 225

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGM 225
             +G+EST+V+        ILRPGG+ I+ L+     E       +  +   +TP++PGM
Sbjct: 226 CGVGVESTVVDGLSSPPA-ILRPGGVGIDELRTCPGWENVQIGYKDGALQGKATPRAPGM 284

Query: 226 LKSHYAPRSQVRLRAIHVN 244
              HY+P+++V L     +
Sbjct: 285 KYKHYSPKARVVLFEAGQD 303



 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 267 LNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
            ++         A  LF+ ++  D+   S I    I +    L  A+ NRL +AA
Sbjct: 385 FDIYLGDDTSSIARGLFSALRSLDERNVSVIYIEGISDTEGDLAAAVMNRLRKAA 439


>gi|261195106|ref|XP_002623957.1| SUA5 [Ajellomyces dermatitidis SLH14081]
 gi|239587829|gb|EEQ70472.1| SUA5 [Ajellomyces dermatitidis SLH14081]
          Length = 490

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/271 (31%), Positives = 133/271 (49%), Gaps = 36/271 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKKHASVDPLSLH--------------------------LAKLFWPGPLTLVLDLLS 100
              +++       SL                           L   FWPGPLT++L   +
Sbjct: 117 REQLQRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+ +  +
Sbjct: 177 PSPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVYTD-L 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYC 213
              I +I+DGG S +G+EST+V+        +LRPGG+ IE ++     E       +  
Sbjct: 236 QGRIDMILDGGPSGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEEVRIGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
           +     P++PGM   HY+P+++V L     +
Sbjct: 295 LQGKEVPRAPGMKYKHYSPKAKVVLFEAGRD 325



 Score = 68.9 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           P +     +     +   +R       N+   I   ++         A  LF+ ++  D+
Sbjct: 395 PTNPFNSSSHVTGYQSTCLRLLPSIELNLGTPIELFDIYIGPDTDSIARGLFSALRGLDE 454

Query: 292 SGASSIAFSSIPNHG--LGIAINNRLERAA 319
              S I    I +    L  AI NRL +AA
Sbjct: 455 KNVSIIYVEGISDTEGDLAAAIMNRLRKAA 484


>gi|308162394|gb|EFO64793.1| SUA5 protein [Giardia lamblia P15]
          Length = 369

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 109/363 (30%), Positives = 162/363 (44%), Gaps = 53/363 (14%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T  + L  A   L  G  +AIPTETVYGLA D+ + TA  +++ +K+RPA +PLI H+S 
Sbjct: 8   TTQSELADAAGALQRGDLVAIPTETVYGLAADALSETACVKIFALKQRPASDPLIVHISH 67

Query: 67  ISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            S +   A     V P+   LA  FWPGPLT+VL       +  + TA  +T   R+P  
Sbjct: 68  SSQLPIIAVISTEVSPIVDALAATFWPGPLTMVLPAAPC--VPSIVTAGSQTVGVRMPRH 125

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + +IE    PLA PSAN  G IS T  + + +  +  ++ LI+DGG   +G+EST++
Sbjct: 126 PVARAIIELAARPLAAPSANMFGSISPTQPEDVAAEFVNSDL-LIVDGGRCDVGIESTVL 184

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-----------ETSTPQSPGMLKSHY 230
            +  +  + ILR G +  E L  A+S+ +   V            ++    SPG    HY
Sbjct: 185 -LIEKDCLTILRRGQVTEEMLIAALSMNILNHVRIETRVLSSSDIQSKAVSSPGQFLRHY 243

Query: 231 APRSQVRL------------------------RAIHVNPREALIR-------FGNVPIKN 259
           +PR+   L                          +  NP  A ++          +    
Sbjct: 244 SPRTVCYLVMKGGPMLPGAVRATLPAHLDGFVVVLDCNPAFAELKPDVLLKSLAGLLPAG 303

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI-PNHGLGIAINNRLERA 318
            E   + L       L+  A  LF  ++ AD  G + I      P  GL  A+ +RL RA
Sbjct: 304 TEPTRL-LRAYSAPTLEAVAQGLFEALRRADRLGPACILALPPQPARGLADALLDRLFRA 362

Query: 319 AAP 321
           A  
Sbjct: 363 AGG 365


>gi|295673282|ref|XP_002797187.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis
           Pb01]
 gi|226282559|gb|EEH38125.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis
           Pb01]
          Length = 489

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 83/265 (31%), Positives = 132/265 (49%), Gaps = 36/265 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L ++ E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKTLLESAEVLQTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100
              +++                             + P+   L   FWPGPLT++L   +
Sbjct: 117 REQLQRILQSNSSSTDHGGSDSRKTRNQGREETNLIPPIYEPLISKFWPGPLTIILPNPT 176

Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+ +  +
Sbjct: 177 PSPLAPEVTSTLTTFGARMPSSPLARLLIHLADRPLAAPSANASTKPSPTTAQHVFTD-M 235

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213
              I +I+DGG   +G+EST+V+        ILRPGG+ IE ++     E       +  
Sbjct: 236 QGRIDIILDGGPCGVGVESTVVDGLL-HPPAILRPGGIGIEEIRACPGWEDVRVGYKDGA 294

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238
           +     P++PGM   HY+P+++V L
Sbjct: 295 LQGKEAPRAPGMKYKHYSPKAKVVL 319



 Score = 72.4 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLE 316
           N+   +   ++S     +  A  LF+ ++  D+   S I    I +    L  AI NRL 
Sbjct: 422 NLATPVELFDVSIGRDTESIARGLFSALRGLDEKNVSVIYVEGISDTEGYLAAAIMNRLR 481

Query: 317 RAA 319
           +AA
Sbjct: 482 KAA 484


>gi|226292280|gb|EEH47700.1| translation initiation protein Sua5 [Paracoccidioides brasiliensis
           Pb18]
          Length = 544

 Score =  245 bits (626), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 85/265 (32%), Positives = 133/265 (50%), Gaps = 36/265 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ AL ++ E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RPA NPLI HVS 
Sbjct: 112 EAKALLESAEALRMSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPADNPLIVHVSS 171

Query: 67  ISMVKKHAS--------------------------VDPLSLHLAKLFWPGPLTLVLDLLS 100
              +++                             + P+   L   FWPGPLT++L   +
Sbjct: 172 REQLQRILRSHSSRPDHGSSDSRKTGNQEREETNLIPPIYEPLISKFWPGPLTIILPNPT 231

Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+ +  +
Sbjct: 232 PSPLAPEVTSTLTTFGARMPSSPLARLLIHLTDRPLAAPSANASTKPSPTTAQHVFTD-M 290

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYC 213
              I +I+DGG   +G+EST+V+        ILRPGG+ IE ++     E       +  
Sbjct: 291 QGRIDIILDGGPCGVGVESTVVDGLL-HPPAILRPGGIGIEEIRACPGWEDVRVGYKDGA 349

Query: 214 VDETSTPQSPGMLKSHYAPRSQVRL 238
           +     P++PGM   HY+P+++V L
Sbjct: 350 LQGKEAPRAPGMKYKHYSPKAKVVL 374



 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLE 316
           N+   +   ++S     +  A  LF+ ++  D+   S I    IP+    L  AI NRL 
Sbjct: 477 NLATPVELFDVSIGRDTESIARGLFSALRGLDEENVSVIYVEGIPDTEGDLAAAIMNRLR 536

Query: 317 RAA 319
           +AA
Sbjct: 537 KAA 539


>gi|239610683|gb|EEQ87670.1| SUA5 [Ajellomyces dermatitidis ER-3]
          Length = 489

 Score =  244 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 35/270 (12%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI HVS 
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHVSS 116

Query: 67  ISMVKKHASVDPLSLH-------------------------LAKLFWPGPLTLVLDLLST 101
              ++   S                                L   FWPGPLT++L   + 
Sbjct: 117 REQLRLLLSPSDSLRDGKSDSGTKRSQQGGETNLIPLIYEPLISRFWPGPLTIILPNPTP 176

Query: 102 TDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160
           + + P  T+ L T   R+P     + LI     PLA PSAN S + S T  +H+ +  + 
Sbjct: 177 SPLAPEVTSTLPTFGVRMPSSPLARLLIYLADRPLAAPSANASTKPSPTTAQHVYTD-LQ 235

Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCV 214
             I +I+DGG S +G+EST+V+        +LRPGG+ IE ++     E       +  +
Sbjct: 236 GRIDMILDGGPSGVGVESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEEVRIGYKDGAL 294

Query: 215 DETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
                P++PGM   HY+P+++V L     +
Sbjct: 295 QGKEVPRAPGMKYKHYSPKAKVVLFEAGRD 324



 Score = 68.9 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD 291
           P +     +     +   +R       N+   I   ++         A  LF+ ++  D+
Sbjct: 394 PTNPFNSSSHVTGYQSTCLRLLPSIELNLGTPIELFDIYIGPDTDSIARGLFSALRGLDE 453

Query: 292 SGASSIAFSSIPNHG--LGIAINNRLERAA 319
              S I    I +    L  AI NRL +AA
Sbjct: 454 KNVSIIYVEGISDTEGDLAAAIMNRLRKAA 483


>gi|261334880|emb|CBH17874.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 379

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 175/373 (46%), Gaps = 58/373 (15%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I D + L  A   L  G  +A+PTETVYGL  ++ +  A+++++E+K RP+ +PLICHV
Sbjct: 3   RIIDVSELDYAAHSLTRGGLVALPTETVYGLGGNALDERAVQQIFEVKGRPSTDPLICHV 62

Query: 65  SDISMVKKHAS--VDPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            DI           DP +L +AK      WPGPLT+V    + + + P  T N      R
Sbjct: 63  PDIQRAVGLWDSNADPAALEVAKWIGDAIWPGPLTIVF--RANSVLPPSVTGNSGYVGVR 120

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175
           +P      +L++    P+A PSAN  G +S T  +H+L   + +  P  L+IDGG S IG
Sbjct: 121 IPNHPIALQLLQLVNFPVAAPSANTFGHVSPTTAEHVLRD-LGERCPSLLVIDGGHSNIG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTP----QS---PGM 225
           +EST++ V    KV ILR G + +  L++ I  + E      D  S P     +   PG 
Sbjct: 180 IESTVLKVASATKVEILRRGKVSLADLQQVIWKKFECHITVRDTRSCPGTVDMAMDGPGQ 239

Query: 226 LKSHYAP----------RSQVRLRAIHVNP------------------REALIRFGNVPI 257
           L +HY+P           +   +    ++                   +  +I FG +  
Sbjct: 240 LLTHYSPSVLSGMLTPKSTNCEVHQNELDKAVVELPSTPPLTGGVPLNQTVIIDFGGLLQ 299

Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLGI 309
           +     +   +LS  G++++A F +F  ++ ++  SGA  + F  I           L  
Sbjct: 300 RFQRVCLAYRDLSAEGEVQQACFAVFEALRWSETVSGAGVVLFPLISEWPCKTGDEELLA 359

Query: 310 AINNRLERAAAPR 322
           A+ +RL RAA+ +
Sbjct: 360 AVEDRLFRAASGK 372


>gi|71010426|ref|XP_758389.1| hypothetical protein UM02242.1 [Ustilago maydis 521]
 gi|46098131|gb|EAK83364.1| hypothetical protein UM02242.1 [Ustilago maydis 521]
          Length = 516

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/274 (32%), Positives = 136/274 (49%), Gaps = 39/274 (14%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I S    N+L KA   L A   +A P+ETVYGL  ++ + +A  ++Y  KKRPA NPLI 
Sbjct: 54  ISSPVTRNSLDKAASHLRASQLVAFPSETVYGLGANALSQSAASKIYAAKKRPADNPLIV 113

Query: 63  HVSDISMVKKH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACF 117
           HVSD+ M+        ++      L K FWPG LTL+  + +     P + T    +   
Sbjct: 114 HVSDLEMLDTLLPQSYTMSQAYSDLIKAFWPGALTLLFPVDTQRPAVPTVVTCGHPSVAV 173

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP------------ 164
           R+P     + LI   G P+A PSAN SG+ S T   H+L   +  ++             
Sbjct: 174 RMPSHPIARALIAISGLPMAGPSANASGRPSPTTAGHVLRD-LGGQLDAESSSADASQAP 232

Query: 165 -----LIIDGGISKIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAI------------ 206
                 I+DGG  ++G+EST+++ +    +VR+LRPGG+ +E +   +            
Sbjct: 233 KGRLRYILDGGACQVGVESTVIDGITAADEVRVLRPGGVTVEQIASVLDKAGLANKVKLR 292

Query: 207 --SVELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
               ++E  V++ S P +PGM   HY+P ++V L
Sbjct: 293 VYGKDMERSVEQESNPTTPGMKYRHYSPTARVVL 326



 Score = 72.4 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 255 VPIKNIENA-IISLNLSKTGKLKEAAFNLFNYMKIADD------SGASSIAFSSIPNHGL 307
           + ++ +EN  +   +L  +G  +  A  +F+ ++  D+           I   ++ + G+
Sbjct: 437 LALEQLENVRVHPFDLGPSGSAEVYAQRMFDGLRTLDEGPLHGADRCDLIFVEAMDDAGV 496

Query: 308 GIAINNRLERAAA 320
           G+A+ NRL++AA+
Sbjct: 497 GLAVMNRLKKAAS 509


>gi|327541326|gb|EGF27868.1| Translation factor, SUA5 type [Rhodopirellula baltica WH47]
          Length = 372

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/348 (29%), Positives = 161/348 (46%), Gaps = 35/348 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T   ++R A + L  G  I +PTETVYGLA     P ++ +++  K+RP+ NPLI
Sbjct: 21  KILPAT-PESIRLAGQALRDGKLIGLPTETVYGLAARGDQPDSVAKIFAAKQRPSTNPLI 79

Query: 62  CHVSDISMVKKHASVD-PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HV D S V     +D  ++    +     WPGPLTLVL    +  +    TA   T   
Sbjct: 80  LHVGDASAVHPLVVLDSAITRRRFEAASSLWPGPLTLVLP--KSEAVLDCVTAGGNTVAV 137

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP      +L+     P+A PSAN S  +S T  +H+ +  +   I  ++DGG+  +GL
Sbjct: 138 RVPAHPVALQLLREVSLPIAAPSANVSNYVSPTRPEHV-TDGLADCIEWVLDGGVCDVGL 196

Query: 177 ESTIVNVQCEK-KVRILRPGGLEIETLKRAISVEL--------EYCVDETSTPQS-PGML 226
           EST++++        ILR G L    L+      +        E     +  P + PG+ 
Sbjct: 197 ESTVLSIADPNAPPTILREGVLSATKLESVFGEPVLSASSSNMELPHPPSDAPAASPGLH 256

Query: 227 KSHYAPRSQVRL--RAIHVNPREALIRFGNVPIKNIENAII----SLNLSKTGKLKEAAF 280
           + HY+PR+ +RL     H +P    +R   + ++   N++       +LS  G   E A 
Sbjct: 257 RRHYSPRTPLRLVRETEHASPANNDLRVLRIRLRGPANSLPGYADVWSLSAVGDPLEIAN 316

Query: 281 NLFNYMKIADDSGASSI---------AFSSIPNHGLGIAINNRLERAA 319
            L+  ++ AD      I            S  N  L  AI++RL RA+
Sbjct: 317 RLYETLRRADSGEFDQIEIDQMNVEDWIES-GNANLIAAISDRLHRAS 363


>gi|160896437|ref|YP_001562019.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1]
 gi|160362021|gb|ABX33634.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1]
          Length = 332

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 95/316 (30%), Positives = 146/316 (46%), Gaps = 21/316 (6%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL- 79
            G  + +PTETVYGLA D+ N  A+ +++  K RP  +PLI HV+D   + ++A   PL 
Sbjct: 20  RGELLGLPTETVYGLAADADNDAAVAQIFTAKGRPPNHPLIVHVADSGAITRYAREVPLF 79

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK----KLIETYGHPL 135
           +  L   FWPGPLTL+L  L        ST    +   R P                 P+
Sbjct: 80  AQQLIDAFWPGPLTLILPRLP--QAARASTGGQDSVGLRCPSHPVAHAVLAACRQLQPPV 137

Query: 136 A---IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
                PSAN+ G++S T   H+       +  L++DGG  ++G+ESTIV+      V +L
Sbjct: 138 WGVSAPSANKFGRVSPTTAAHVADEF--GDTLLVLDGGACEVGIESTIVDCTRGVPV-LL 194

Query: 193 RPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           RPG +  + ++RA     L     + +TP++ G L +HYAP +QVRL           + 
Sbjct: 195 RPGAITRDDIERACGQRPLSKEELQENTPRASGTLLAHYAPNAQVRLMDARQLQAGLDVL 254

Query: 252 FGNVPIKNIENAIISLNLSKTGKLK-------EAAFNLFNYMKIADDSGASSIAFSSIPN 304
             +     + +       S+   L+         A  LF  ++  D+ GA  I   + P+
Sbjct: 255 GADARNLAVYHRTPLRTASRAVTLRAMPADAAATARELFGALRDFDEVGARLIWIETPPD 314

Query: 305 HGLGIAINNRLERAAA 320
                 + +RL RAAA
Sbjct: 315 TPDWEGVRDRLLRAAA 330


>gi|71756077|ref|XP_828953.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834339|gb|EAN79841.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 379

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 174/373 (46%), Gaps = 58/373 (15%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I D + L  A   L  G  +A+PTETVYGL  ++ +  A+++++E+K RP+ +PLICHV
Sbjct: 3   RIIDVSELDYAAHSLTRGGLVALPTETVYGLGGNALDERAVQQIFEVKGRPSTDPLICHV 62

Query: 65  SDISMVKKHAS--VDPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            DI           DP +L +AK      WPGPLT+V    + + + P  T N      R
Sbjct: 63  PDIQRAVGLWDSNADPAALEVAKWIGDAIWPGPLTIVF--RANSVLPPSVTGNSGYVGVR 120

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175
           +P      +L++    P+A PSAN  G +S T  +H+L   + +  P  L+IDGG S IG
Sbjct: 121 IPNHPIALQLLQLVNFPVAAPSANTFGHVSPTTAEHVLRD-LGERCPSLLVIDGGHSNIG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTP----QS---PGM 225
           +EST++ V    KV ILR G + +  L++ I  +        D  S P     +   PG 
Sbjct: 180 IESTVLKVASATKVEILRRGKVSLADLQQVIWKKFACHITVRDTRSCPGTVDMAMDGPGQ 239

Query: 226 LKSHYAP----------RSQVRLRAIHVNP------------------REALIRFGNVPI 257
           L +HY+P           +   +    ++                   +  +I FG +  
Sbjct: 240 LLTHYSPSVLSGMLTPKSTNCEVHQNELDKAVVELPSTPPLTGGVPLNQTVIIDFGGLLQ 299

Query: 258 KNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLGI 309
           +     +   +LS  G++++A F +F  ++ ++  SGA  + F  I           L  
Sbjct: 300 RFQRVCLAYRDLSAEGEVQQACFAVFEALRWSETVSGAGVVLFPLISEWPCKTGDEELLA 359

Query: 310 AINNRLERAAAPR 322
           A+ +RL RAA+ +
Sbjct: 360 AVEDRLFRAASGK 372


>gi|32474396|ref|NP_867390.1| translation factor [Rhodopirellula baltica SH 1]
 gi|32444934|emb|CAD74936.1| putative translation factor [Rhodopirellula baltica SH 1]
          Length = 372

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 103/348 (29%), Positives = 162/348 (46%), Gaps = 35/348 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  T   ++R A + L  G  I +PTETVYGLA     P ++ +++  K+RP+ NPLI
Sbjct: 21  KILPAT-PESIRLAGQALRDGRLIGLPTETVYGLAARGDQPDSVAKIFAAKQRPSTNPLI 79

Query: 62  CHVSDISMVKKHASVD-PLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HV D S V     +D  ++    +     WPGPLTLVL    +  +    TA   T   
Sbjct: 80  LHVGDASAVHPLVVLDSAITRRRFEAASSLWPGPLTLVLP--KSEAVLDCVTAGGNTVAV 137

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP      +L+     P+A PSAN S  +S T  +H+ +  + + I  ++DGG+  +GL
Sbjct: 138 RVPAHPVALQLLREVSLPIAAPSANVSNYVSPTRPEHV-TDGLAECIEWVLDGGVCDVGL 196

Query: 177 ESTIVNVQCEK-KVRILRPGGLEIETLKRAISVE--------LEYCVDETSTPQS-PGML 226
           EST++++        ILR G L    L+              +E     +  P + PG+ 
Sbjct: 197 ESTVLSIADPNAPPTILREGVLSATKLESVFGEPVLSGSSSNIELPHPPSDAPAASPGLH 256

Query: 227 KSHYAPRSQVRL--RAIHVNPREALIRFGNVPIKNIENAII----SLNLSKTGKLKEAAF 280
           + HY+PR+ +RL     H +P    +R   + ++   N++       +LS  G   E A 
Sbjct: 257 RRHYSPRTPLRLVRETEHASPANNDLRVLRIRLRGPANSLPGYADVWSLSAVGDPLEIAN 316

Query: 281 NLFNYMKIADDSGASSI---------AFSSIPNHGLGIAINNRLERAA 319
            L+  ++ AD      I            S  N  L  AI++RL RA+
Sbjct: 317 RLYETLRRADSGEFDQIEIDQMNVEDWIES-GNANLIAAISDRLHRAS 363


>gi|66828913|ref|XP_647810.1| hypothetical protein DDB_G0278955 [Dictyostelium discoideum AX4]
 gi|60470098|gb|EAL68079.1| hypothetical protein DDB_G0278955 [Dictyostelium discoideum AX4]
          Length = 403

 Score =  241 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 163/387 (42%), Gaps = 67/387 (17%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I++ T  N + +A   +  G  +A PTETVYGL  ++ +  A+  +++ K RP  +P+I
Sbjct: 9   KIVNPTLENLI-EAGNKIKNGGLVAFPTETVYGLGANALDKDAVLSIFKAKGRPLTDPVI 67

Query: 62  CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            H+ +     K   +          L+  FWPGPLT+V    S+  I  + TA       
Sbjct: 68  VHIIESEYALKLLKLTEKQKEIFQVLSDNFWPGPLTIV--AKSSELIPMIVTAETGYVGV 125

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI------------- 163
           R P     ++LI+  G P+A PSANR G +S T   H+L       I             
Sbjct: 126 RFPNHPLAQQLIKHSGKPIAAPSANRFGHVSPTTANHVLDDLADSPITILNSINNNSSCD 185

Query: 164 ---------PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
                        +    KIG+EST++ +  + ++ ILR GG+  ++LK  I+ + +  +
Sbjct: 186 NKDIDDNNNNTKEEEEACKIGIESTVLKIVSDSELVILRRGGVSEKSLKCVINNKFKDTI 245

Query: 215 DETSTPQ-----------SPGMLKSHYAPRSQVRLRAIHVN------------------- 244
             TS  +           +PG L +HYAP  Q  +    +N                   
Sbjct: 246 QITSINKTVENTTSQGQEAPGQLLTHYAPDIQTFILDNILNSENDNNNNNNKNNDNSLDL 305

Query: 245 PREALIRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASSIAF--- 299
                I FGN      +N  ++  +LS+   + EAA  LF  ++ ++   GA  I     
Sbjct: 306 KECVYIDFGNQLPNEFKNQCLAYRDLSENKNILEAANQLFAVLRWSENQEGAKIILLPDL 365

Query: 300 --SSIPNHGLGIAINNRLERAAAPRNQ 324
                 +     A+ +R+ RAA+ +  
Sbjct: 366 RKEPFKSLDNSEAVFDRIFRAASGKQA 392


>gi|332525423|ref|ZP_08401583.1| Sua5/YciO/YrdC/YwlC family protein [Rubrivivax benzoatilyticus JA2]
 gi|332108692|gb|EGJ09916.1| Sua5/YciO/YrdC/YwlC family protein [Rubrivivax benzoatilyticus JA2]
          Length = 323

 Score =  241 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 97/332 (29%), Positives = 150/332 (45%), Gaps = 21/332 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+  T   ++  A E L  G  +A PTETVYGL   +    A   ++ +K RP  +PL
Sbjct: 1   MPILDGTKPASITSAAERLRDGGLVAFPTETVYGLGARADRDVATAAVFAVKGRPDDHPL 60

Query: 61  ICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I HV+D + V + A    P++  L   FWPGPLTL+L           +     T   R+
Sbjct: 61  IVHVADAAAVTEFAEPPGPVAQALMARFWPGPLTLILRRREGRGEA--AAGGQDTIGLRL 118

Query: 120 PCG-FTKKLIE---TYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
           P       L+      G P +A PSANR G++S T   H++         LI+DGG  ++
Sbjct: 119 PSHPVALALLREAARLGVPGVAAPSANRFGRVSPTTAAHVVGEFGDGL--LIVDGGACEV 176

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRS 234
           G+ES IV+   E+   +LRPG L+   ++  I   L        +P++ G L+SHYAP +
Sbjct: 177 GIESAIVDCSGERPA-LLRPGALDRREIEAVIGAPL--AAAGADSPRASGTLESHYAPAA 233

Query: 235 QVR------LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI 288
           ++R      L A+   P  A +   +  +    +++    +                ++ 
Sbjct: 234 RIRLLDTASLMAVLRKPVPAGVAVYSRVVPPPGSSVQHRPMPADPAAAAHELF--AALRG 291

Query: 289 ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
            D  GAS +     P       + +RL RAAA
Sbjct: 292 FDAGGASLVWVEQPPAGPEWDGVRDRLTRAAA 323


>gi|115372429|ref|ZP_01459738.1| Sua5/YciO/YrdC/YwlC [Stigmatella aurantiaca DW4/3-1]
 gi|115370642|gb|EAU69568.1| Sua5/YciO/YrdC/YwlC [Stigmatella aurantiaca DW4/3-1]
          Length = 297

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/300 (34%), Positives = 148/300 (49%), Gaps = 14/300 (4%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGP 91
           YGLA ++ +  A+RR++ IK RPA +PLI H+     + + A  + P +  LA  FWPGP
Sbjct: 2   YGLAANAEDELAVRRVFAIKGRPATHPLIVHLPQAEALPRWARDIPPEAWKLAAAFWPGP 61

Query: 92  LTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITN 150
           LTLVL    T+      T    T   RVP       ++   G  LA PSANR G++S T 
Sbjct: 62  LTLVLRR--TSRATDAVTGGQDTVALRVPNHPLALAVLSALGGGLAAPSANRFGRVSPTT 119

Query: 151 VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL 210
             H+    +  ++ LI+DGG   +G+ESTIV++       ILRPGGL  E L+  +   +
Sbjct: 120 AGHV-REDLGSDVDLILDGGPCTVGVESTIVDLSSGDPA-ILRPGGLAAEELEHVLGRPV 177

Query: 211 EYCVDETSTPQSPGMLKSHYAPRSQVRLRAI------HVNPREALIRFGNVPIKNIENAI 264
              V  TS+ +  G L SHYAPR+ V L  +          R   +R G +   ++    
Sbjct: 178 P--VRATSSVRVSGSLASHYAPRAGVTLVEVPEAAARAQALRGQGLRVGVLGPASLALPP 235

Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQ 324
                        AA +L+  ++ AD +G   +        GLG+A+ +RL RAAAPR  
Sbjct: 236 GVPRFDMPEDPAGAAHDLYLRLREADLAGLDLLLACLPSARGLGLAVRDRLARAAAPRTS 295


>gi|183221225|ref|YP_001839221.1| putative translation factor SUA5 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167779647|gb|ABZ97945.1| Putative translation factor SUA5 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 318

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/321 (30%), Positives = 147/321 (45%), Gaps = 33/321 (10%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PTETV+G+   S N  A  R+Y+IK RP+ NPLI H S I  +KK   V+ ++  L 
Sbjct: 2   VVFPTETVFGIGAASDNEDACLRIYQIKGRPSDNPLIAHFSSIDAIKKVCYVNEVANQLL 61

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
             F PGP TLVL          +    L T   R+P     ++ IE  G P++ PSAN S
Sbjct: 62  CEFSPGPFTLVLPKTD----PKIFPKQLPTLAVRIPKNPVIREWIEACGSPISAPSANLS 117

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+ S+T +  ++       +  I+      +G+EST++ +  E  V +LRPG +E + L+
Sbjct: 118 GRPSLTRMTDVVR-YFDGIVDGILIAEEPNLGIESTVLGLTTEVPV-LLRPGSIESQALR 175

Query: 204 R-----AISVELEYCVDETS--------TPQSPGMLKSHYAPRSQVRLRAIH-------- 242
           R      I  E++    ++          P SPGM   HYAP ++V L            
Sbjct: 176 RFLPNLVIPNEIKSKDSKSEDSKTNQSFVPLSPGMKYKHYAPNAKVVLLETEIFLSTFSK 235

Query: 243 --VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFS 300
             ++P+ A I F        E    +  L     +   A  L+ + +  D  G + I   
Sbjct: 236 QGMDPKFAWIGFSFGSKTLPEVLGGNRVLCVANNIDYMAK-LYAFFESCDLEGYNRIYCE 294

Query: 301 SIPNHGLG-IAINNRLERAAA 320
            +P    G   + NRLE+AAA
Sbjct: 295 -MPREEEGREGLLNRLEKAAA 314


>gi|330799541|ref|XP_003287802.1| hypothetical protein DICPUDRAFT_151977 [Dictyostelium purpureum]
 gi|325082178|gb|EGC35669.1| hypothetical protein DICPUDRAFT_151977 [Dictyostelium purpureum]
          Length = 382

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 48/372 (12%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+  +  N + +A + +  G  ++ PTETVYGL  ++ +  A+  +++ K RP  +P+I
Sbjct: 9   KIVEPSIENII-EAGKKIKDGGLVSFPTETVYGLGANALDEKAVLSIFQSKGRPLTDPVI 67

Query: 62  CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HV D    K    +          L    WPGPLT+V    S+  I  + TA       
Sbjct: 68  VHVIDSEYAKTLLQLTDKQKMIFKVLTDNLWPGPLTIV--AKSSELIPMIVTAQTGYVGV 125

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-----I 171
           R P     + LI+  G P+A PSANR G +S T   H+    +      I+D        
Sbjct: 126 RYPKHDLAQLLIKHSGKPIAAPSANRFGHVSPTRAMHVF-DDLGHSDITILDCNEKYQSP 184

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP 220
            KIG+EST++ +  +  + ILR GG   ++++  I           ++        +   
Sbjct: 185 CKIGIESTVLKIVSDDHLVILRKGGHSEKSIREIIDKHFGNEIRIEAINKTVSNQTSEGQ 244

Query: 221 QSPGMLKSHYAPRSQVRL----------------RAIHVNPREALIRFGNVPIKNIENAI 264
           ++PG L +HYAP  Q  +                 +         I FGN      +N  
Sbjct: 245 EAPGQLLTHYAPDIQTFILENTLTNNIDNNSNNSSSNIDFSECVYIDFGNQLPMEFKNKC 304

Query: 265 ISL-NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAF-----SSIPNHGLGIAINNRLER 317
           ++  +LS++  ++EA+  LF+ ++ +++   A  I                 A+ +R+ R
Sbjct: 305 LAYKDLSESCNIEEASGELFSVLRWSENVKNAKIILLPDLRKEQFKQLDNSEAVFDRIFR 364

Query: 318 AAAPRNQSQRIV 329
           A++ +  S  ++
Sbjct: 365 ASSGKYASLSLI 376


>gi|171057058|ref|YP_001789407.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6]
 gi|170774503|gb|ACB32642.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6]
          Length = 346

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/324 (26%), Positives = 142/324 (43%), Gaps = 30/324 (9%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV-SDISMVKKHASVDPLS 80
           G  +A PTETVYGL   + +  A+ +++  K RP+ +PLI HV    S +   A + P++
Sbjct: 27  GELVAFPTETVYGLGARADDADAVVKIFAAKGRPSDHPLIVHVADAASALAFAAELPPVA 86

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-----KKLIETYGHPL 135
             L   FWPGPL+LV+   +  D+   +     +   R P         +         +
Sbjct: 87  RRLMDAFWPGPLSLVVPRRA--DVAAAAAGGQSSVGLRCPAHPVAQALLRAAAAAGVPGV 144

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A PSANR G++S T   H++          ++DGG  ++G+ES IV+      V +LRPG
Sbjct: 145 AAPSANRFGRVSPTRAAHVIDEFADLADLPVLDGGDCELGIESAIVDCTRGYPV-LLRPG 203

Query: 196 GLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNV 255
            L    ++ A    L     +   P++ G L++HYAPR++VRL           +  G++
Sbjct: 204 CLGAAQIEAAAGEPLRSR--DEQAPRASGTLEAHYAPRAKVRLMDRQQIQTALQVLHGSL 261

Query: 256 ---PIKNIENAIISLNLSKTG----------------KLKEAAFNLFNYMKIADDSGASS 296
                       ++L +   G                    AA  LF  ++  DD+    
Sbjct: 262 PAGKAARAAAPGLTLAVYSRGPRPASQPGVLWRTMPADAGAAAHELFGVLRELDDALVQL 321

Query: 297 IAFSSIPNHGLGIAINNRLERAAA 320
           I     P+      + +RL+RA+A
Sbjct: 322 IWVEQPPSEPAWDGVRDRLQRASA 345


>gi|212528906|ref|XP_002144610.1| translation initiation protein Sua5 [Penicillium marneffei ATCC
           18224]
 gi|210074008|gb|EEA28095.1| translation initiation protein Sua5 [Penicillium marneffei ATCC
           18224]
          Length = 426

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 17/251 (6%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH--------AS 75
           P+  PTETVYGL  D+    +++ +Y+ KKRP+ NPLI HV  I MV +           
Sbjct: 55  PVGFPTETVYGLGADATRSGSVQGIYKAKKRPSDNPLIVHVDSIEMVNRLLNPDGNSTTK 114

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134
           +  +   L   FWPG LT++L     + +    TANL T   R+P   F + LI     P
Sbjct: 115 IPTIYEPLISRFWPGALTILLPNPKGSLLAKEVTANLPTFGVRMPSSAFARLLIHVTDRP 174

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           LA PSAN S + S T  +H+    +   I LI+DGG   +G+EST+V+   +    ILRP
Sbjct: 175 LAAPSANASTKPSPTTAQHVY-HDLQGRIDLILDGGPCGVGVESTVVDGLSDPPA-ILRP 232

Query: 195 GGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
           GG+ IE +K     E       +  +     P++PGM   HY+P+++V L     +    
Sbjct: 233 GGIGIEEIKTCPGWENVQVGYHDNALQSKEAPRAPGMKYKHYSPKARVVLFEAGSDLELV 292

Query: 249 LIRFGNVPIKN 259
             +     + N
Sbjct: 293 AAQVKQESVSN 303



 Score = 76.6 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI--PNHGL 307
           IR  +VPI++I   I  + L  +   +  A  LF  ++  D     +I    I      L
Sbjct: 351 IRQISVPIEDIPTTIYDVQLGSSA--ESIARGLFAALRSLDAENVDAIYIEGIRDDEGDL 408

Query: 308 GIAINNRLERAA 319
             A+ NRL +AA
Sbjct: 409 SAAVMNRLRKAA 420


>gi|189211403|ref|XP_001942032.1| translation initiation protein Sua5 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978125|gb|EDU44751.1| translation initiation protein Sua5 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 507

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 133/258 (51%), Gaps = 26/258 (10%)

Query: 12  LRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +++A + L     P+A PTETVYGL  D+    A++ ++  K RPA NPLI HV  +  +
Sbjct: 105 MKRAAKELQDTNNPVAFPTETVYGLGADATRSAAVKEIFARKGRPADNPLIVHVHSLPQL 164

Query: 71  KKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           +   +                +  +   + + FWPGP+T++L +   + + P  TA L T
Sbjct: 165 RALLAGRLEAEGDGKILGKDPIPEIYRPVIERFWPGPITIILPVPQNSILAPEVTAGLST 224

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P       L+   G PLA PSAN S + S T  +H+    + +++ LIIDGG  +
Sbjct: 225 FGARMPRSIIALSLLRLCGRPLAAPSANASTRPSPTAAEHV-HDDLREKLDLIIDGGPCE 283

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLK 227
           +G+EST+V+        ILRPGG+ +E L++    E       +   +++S P++PGM  
Sbjct: 284 VGVESTVVDGLSNPPA-ILRPGGVTVEQLRQCPGWESVIVGYKDKQAEDSSKPRAPGMKY 342

Query: 228 SHYAPRSQVRLRAIHVNP 245
            HY+P++ V L     N 
Sbjct: 343 RHYSPKASVLLFESGANK 360



 Score = 71.6 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN---HGLGIAINNRLERA 318
            AI   ++    K ++ A  LF+ ++  D     +I    I +     +  A+ NRL +A
Sbjct: 443 GAIQVWDIDLGAKTEDVARGLFSALRELDKKAVETIYVEGIDDKTGDDIAAAVMNRLRKA 502

Query: 319 A 319
           A
Sbjct: 503 A 503


>gi|149921509|ref|ZP_01909960.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1]
 gi|149817584|gb|EDM77052.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1]
          Length = 356

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 103/324 (31%), Positives = 156/324 (48%), Gaps = 25/324 (7%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLS 80
           G  +A PTETVYGL  ++ +P A+  +Y  K RP+ NPLI HV D    +   A+  PL+
Sbjct: 36  GRLVAFPTETVYGLGANALDPRAVAGIYAAKGRPSTNPLIVHVRDSDHARTLVAAWPPLA 95

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPS 139
             LA+ FWPGPLTLVL       +  L +A L T   R P     + L+     PLA PS
Sbjct: 96  QALAEAFWPGPLTLVLPKRG--LVPDLVSAGLDTVGVRAPAHPVAQALLRAALLPLAAPS 153

Query: 140 ANRSGQISITNVKHILS--SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           ANRS  IS T   H+    + +  +   I+DGG +++G+EST++++   +   +LR GG+
Sbjct: 154 ANRSQAISPTTAAHVARSLAHVDADALTILDGGTTRVGIESTVLDLSRGQP-TVLRLGGV 212

Query: 198 EIETLKRAISVELEYCV---------DETSTPQ-SPGMLKSHYAPRSQVRLRAIH----- 242
               L+  ++   E             +T   + SPGM   HYAP  QV L  +      
Sbjct: 213 STRALEAELARHPELGARLVHATNGSKDTEVARPSPGMDARHYAPAGQVLLAPLDTLRAR 272

Query: 243 -VNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
                +AL R      +    A+ +++  L       + A  L+  +   D+ G  S+  
Sbjct: 273 LERDGDALPRPLGALTRGDVEALGAVDHHLRMPDDASDYASMLYAALHTLDELGCGSVLI 332

Query: 300 SSIPNHGLGIAINNRLERAAAPRN 323
            ++P+     A+ +RL RAA PR 
Sbjct: 333 EAVPDAPSWAAVADRLRRAATPRG 356


>gi|330916672|ref|XP_003297514.1| hypothetical protein PTT_07940 [Pyrenophora teres f. teres 0-1]
 gi|311329751|gb|EFQ94374.1| hypothetical protein PTT_07940 [Pyrenophora teres f. teres 0-1]
          Length = 447

 Score =  238 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 133/255 (52%), Gaps = 26/255 (10%)

Query: 8   DSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           D+  +++A + L     P+A PTETVYGL  D+    A++ ++  K RPA NPLI HV  
Sbjct: 41  DAGIMKRAAKELQDTNNPVAFPTETVYGLGADATRSAAVKEIFARKGRPADNPLIVHVHS 100

Query: 67  ISMVKKHA----------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA 110
           +  ++                    +  +   + + FWPGP+T++L +   + + P  TA
Sbjct: 101 LPQLRALLVGKLEAEGDGKIAGKDPIPEIYRPVIECFWPGPITIILPVPKNSILAPEVTA 160

Query: 111 NLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            L T   R+P       L+   G PLA PSAN S + S T  +H+    + +++ LIIDG
Sbjct: 161 GLSTFGARMPRSIIALSLLRLCGRPLAAPSANASTRPSPTAAEHV-HDDLREKLDLIIDG 219

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSP 223
           G  ++G+EST+V+        ILRPGG+ +E L++    E       +   +++S P++P
Sbjct: 220 GPCEVGVESTVVDGLSSPPA-ILRPGGVTVEQLRQCPGWESVVVGYKDKQAEDSSKPRAP 278

Query: 224 GMLKSHYAPRSQVRL 238
           GM   HY+P++ V L
Sbjct: 279 GMKYRHYSPKASVLL 293



 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 262 NAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN---HGLGIAINNRLERA 318
            AI   ++    K ++ A  LF+ ++  D     +I    I +     +  A+ NRL +A
Sbjct: 383 GAIQVWDIDLGAKTEDVARGLFSALRELDKKAVETIYVEGIDDKTGDDIAAAVMNRLRKA 442

Query: 319 A 319
           A
Sbjct: 443 A 443


>gi|322824288|gb|EFZ29735.1| hypothetical protein TCSYLVIO_3990 [Trypanosoma cruzi]
          Length = 384

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 169/380 (44%), Gaps = 59/380 (15%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  ++ L +A + L  G  +AIPTETVYGL  ++ N  A+ +++ +K RP  +PLICHV
Sbjct: 3   RIISASELERAADALARGNLVAIPTETVYGLGGNALNKEAVEKIFTVKGRPLTDPLICHV 62

Query: 65  SDISMVKKHASV--DPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           SD+        V  DP ++ LA+      WPGPLT+VL   +   +    T        R
Sbjct: 63  SDVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIVL--RANPLLPNSVTGGSGFVGAR 120

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175
           +P    T +L++    P+A PSAN  G +S T   H+L   +  +    LI+DGG   IG
Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKD-LGPKDSSLLIVDGGPCDIG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY----------CVDETSTPQSPGM 225
           +EST+V V   + V ILR GG+ +  + RA+  +              +        PG 
Sbjct: 180 IESTVVKVNNVESVEILRRGGVTLTEVLRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQ 239

Query: 226 LKSHYAPRSQVRL-----------------------RAIHVNPREALIR------FGNVP 256
           L +HY+P    RL                        +    P E L+R      FG   
Sbjct: 240 LLTHYSPSVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKL 299

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI---AFSSIP----NHGLG 308
                  +   +LS   +++EA F +F+ ++  +   GA  +     S  P    +  L 
Sbjct: 300 QCLKPGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSGWPHASVDTDLL 359

Query: 309 IAINNRLERAAAPRNQSQRI 328
            A+ +RL RAA+ +    R+
Sbjct: 360 AAVEDRLFRAASGKVARIRM 379


>gi|71421441|ref|XP_811801.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876508|gb|EAN89950.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 384

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 110/380 (28%), Positives = 169/380 (44%), Gaps = 59/380 (15%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  ++ L KA + L  G  +AIPTETVYGL  ++ N  A+ +++ +K RP  +PLICHV
Sbjct: 3   RIISASELEKAADALARGNLVAIPTETVYGLGGNALNKEAVEKIFIVKGRPLTDPLICHV 62

Query: 65  SDISMVKKHASV--DPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           SD+        V  DP ++ LA+      WPGPLT+VL   +   +    T        R
Sbjct: 63  SDVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIVL--RANPLLPNSVTGGSGFVGAR 120

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175
           +P    T +L++    P+A PSAN  G +S T   H+L   +  +    LI+DGG   IG
Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKD-LGPKDSSLLIVDGGPCDIG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY----------CVDETSTPQSPGM 225
           +EST+V V   + V ILR GG+ +  + RA+  +              +        PG 
Sbjct: 180 IESTVVKVNNVESVEILRRGGVTLTEVLRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQ 239

Query: 226 LKSHYAPRSQVRL-----------------------RAIHVNPREALIR------FGNVP 256
           L +HY+P    RL                        +    P E L+R      FG   
Sbjct: 240 LLTHYSPNVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKL 299

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSI---AFSSIP----NHGLG 308
                  +   +LS   +++EA F +F+ ++  +   GA  +     S  P    +  L 
Sbjct: 300 QCLKPGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSGWPHASVDTDLL 359

Query: 309 IAINNRLERAAAPRNQSQRI 328
            A+ +RL RAA+ +    R+
Sbjct: 360 AAVEDRLFRAASGKVARIRM 379


>gi|328870458|gb|EGG18832.1| hypothetical protein DFA_02571 [Dictyostelium fasciculatum]
          Length = 560

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 100/390 (25%), Positives = 162/390 (41%), Gaps = 73/390 (18%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I ++TD N +R A + +  G  +A PTETVYGL  ++ +  A+  ++E K RP  +P+I
Sbjct: 108 KIDTLTDDN-MRDAADKIRRGGLVAFPTETVYGLGANALDEKAVLSIFEAKGRPLTDPVI 166

Query: 62  CHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            HV       K   +          L   FWPGPLT+V    ++  I P+ TA       
Sbjct: 167 VHVICKDEAAKLLELTDAQKRLFTTLTDAFWPGPLTIV--GRASALIPPIVTAQTGYVGV 224

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG---ISK 173
           R P     ++LI+    P+A PSANR G +S T   H+    +      I++ G      
Sbjct: 225 RYPKHPVAQRLIKESQCPIAAPSANRFGHVSPTLPIHVF-DDLGHSPITILEPGQDAPCA 283

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAI--------SVELEYCVDETSTPQSPGM 225
            G+EST++ +  +  + ILR GG+  + +K+          +V  +     T   ++PG 
Sbjct: 284 FGIESTVLKIVDDHTLCILRKGGVCEKDIKQLFQHQTISITAVNKQVSNKTTEGQEAPGQ 343

Query: 226 LKSHYAPRSQVRL----------------------RAIHVNPREALIRFGN--------- 254
           L +HYAP  Q  +                                 I FG+         
Sbjct: 344 LLTHYAPDIQAYILLDIIINTENGNGTTNNNNQEENNSFNLSECVFIDFGDYLNKSRSSS 403

Query: 255 ---------------VPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIAD-DSGASSI 297
                              NIEN  ++  +LSKTG + EAA  LF+ ++ ++    A  I
Sbjct: 404 QSHSSSSSSQSNNSNNNNNNIENEFLAFKDLSKTGNVLEAANVLFSTLRWSESQQQAKII 463

Query: 298 AFSSIPNHGL-----GIAINNRLERAAAPR 322
               +    +       A+ +R+ RAA+ +
Sbjct: 464 LLPDLRRDDVKSLDYSDAVFDRIFRAASGK 493


>gi|313903648|ref|ZP_07837038.1| Sua5/YciO/YrdC/YwlC family protein [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466201|gb|EFR61725.1| Sua5/YciO/YrdC/YwlC family protein [Thermaerobacter subterraneus
           DSM 13965]
          Length = 493

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 123/236 (52%), Gaps = 9/236 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  A+R+A   L  G  +A PTETVYGL  D+ NP A+ R++  K RPA NPLI HV+  
Sbjct: 76  DEAAVRRAGAILRQGGLVAFPTETVYGLGADALNPRAVARIFAAKGRPADNPLIVHVTGP 135

Query: 68  SMVKK--HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
                   AS       LA+ FWPGPLTLVL   +   +  +  A L T   R P     
Sbjct: 136 EQAGPELVASWPEAGRRLAERFWPGPLTLVLP--AGPAVPAVVRAGLPTVAVRCPAHPVA 193

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + LI   G P+A PSANRSG+ S T  + +  + +   + +++D G   +G+EST+V+V 
Sbjct: 194 QALIAAAGTPVAAPSANRSGRPSPTRAEDVW-ADLGPHLDMLLDAGPVPVGVESTVVDVT 252

Query: 185 CEKKVRILRPGGLEIETLKRAIS--VELEYCVDETSTPQSPGMLKSHYAPRSQVRL 238
                R+LRPGG+  E L+  +   +     V       +PGM   HYAP + + L
Sbjct: 253 VW-PPRLLRPGGVPAEDLEAVLGVALAAPPVVAAGEAAPAPGMKYRHYAPEAPLAL 307



 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 253 GNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAIN 312
           G     +     + L+L    +  + A  LF  ++ AD  GA+ +   ++P HGLG A+ 
Sbjct: 410 GRERAGDFARGPVVLDLGSRHRPDQQARRLFRALRAADALGATRVLALAVPEHGLGRAVM 469

Query: 313 NRLERAAAP 321
           NRL +AAA 
Sbjct: 470 NRLRKAAAG 478


>gi|71416654|ref|XP_810332.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874846|gb|EAN88481.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 384

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 165/374 (44%), Gaps = 59/374 (15%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  ++ L KA   L  G  +AIPTETVYGL  ++ N  A+ +++ +K RP  +PLICHV
Sbjct: 3   RIISASELEKAAGALARGNLVAIPTETVYGLGGNALNKEAVEKIFTVKGRPLTDPLICHV 62

Query: 65  SDISMVKKHASV--DPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           SD+        V  DP ++ LA+      WPGPLT+VL   +   +    T        R
Sbjct: 63  SDVEKAMDLWDVHADPEAVELARVLGTAIWPGPLTIVL--RANPLLPNSVTGGSGFVGAR 120

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKIG 175
           +P    T +L++    P+A PSAN  G +S T   H+L   +  +    LI+DGG   IG
Sbjct: 121 IPRHEITLRLLQLVNFPVAAPSANTFGHVSPTTADHVLKD-LGPKDSSLLIVDGGPCDIG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEY----------CVDETSTPQSPGM 225
           +EST+V V   + V ILR GG+ +  ++RA+  +              +        PG 
Sbjct: 180 IESTVVKVNNVESVEILRRGGVTLTEVQRALGDKFHPLITIRDTRLRHLSPEMAMDGPGQ 239

Query: 226 LKSHYAPRSQVRL-----------------------RAIHVNPREALIR------FGNVP 256
           L  HY+P    RL                        +    P E L+R      FG   
Sbjct: 240 LLMHYSPSVPSRLLTPSSFTTNLPMDPEGALVEFSSNSSVAAPTEVLLRHTVIIDFGGKL 299

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLG 308
                  +   +LS   +++EA F +F+ ++  +   GA  + F  +           L 
Sbjct: 300 HCLKSGCLAYRDLSVNAQVREACFAVFDALRWTETIPGAEVVLFPLVSEWPHASVDTDLL 359

Query: 309 IAINNRLERAAAPR 322
            A+ +RL RAA+ +
Sbjct: 360 AAVEDRLFRAASGK 373


>gi|319764783|ref|YP_004128720.1| sua5/ycio/yrdc/ywlc family protein [Alicycliphilus denitrificans
           BC]
 gi|317119344|gb|ADV01833.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           BC]
          Length = 332

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 101/345 (29%), Positives = 159/345 (46%), Gaps = 43/345 (12%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T  ++++ A   L  G  + +PTETVYGLA D+ N  A+ R++  K RPA +PLI 
Sbjct: 2   ILDGTLPSSVQAAARLLARGELLGLPTETVYGLAADADNDAAVARIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + +  +A   PL +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADSTAITHYAKEVPLFAQQLIDAFWPGPLTLILPRLPAA--ARASTGGQDSVGLRCPA 119

Query: 122 GFTK----KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
                      +    P   +A PSAN  G++S T  +H+ + +   E+ L++DGG   +
Sbjct: 120 HPVAHAVLAACQRLDPPVWGVAAPSANHFGKVSPTTAQHV-ADAFGDEL-LVLDGGACAV 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233
           G+ESTI++      V +LRPG +    ++RA  +  L      T TP++ G L +HYAP 
Sbjct: 178 GIESTIIDCTRGVPV-LLRPGAISRADVQRACGLRPLSKEELPTHTPRASGTLLAHYAPT 236

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI----- 288
           ++VRL                  +  +      L +     L+ A+  +   ++      
Sbjct: 237 ARVRLMDARQL---------QAGLDVLGADAAHLAVYARAPLRSASSRI--ILRRMPDDA 285

Query: 289 -------------ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                         DD+GA  I   + P+      + +RL+RAAA
Sbjct: 286 AAAAQQLFAALRGFDDAGARLIWIETPPDTPDWEGVRDRLQRAAA 330


>gi|162455228|ref|YP_001617595.1| putative translation factor [Sorangium cellulosum 'So ce 56']
 gi|161165810|emb|CAN97115.1| conserved putative translation factor [Sorangium cellulosum 'So ce
           56']
          Length = 329

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 104/314 (33%), Positives = 152/314 (48%), Gaps = 14/314 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  +A PTETVYGL   + +  A R ++E K RP  NPLI HV D++  +  A  
Sbjct: 18  EILRRGGLVAFPTETVYGLGARADDARAARGIFEAKGRPPGNPLIVHVPDVASARALADG 77

Query: 77  DPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            P  +  LA+  WPGPLTL++       +  +  A   T   RVP     + L++  G P
Sbjct: 78  WPADAERLAQAMWPGPLTLIVARRPDR-VAGVVAAGGPTVAIRVPVHPIARALLDAVGLP 136

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           +A PSANRS +IS T  +H+   S+   I  I+DGG + +G+ESTIV+V      R+LRP
Sbjct: 137 IAAPSANRSTEISPTTAEHV-EKSLGGRIDAILDGGPTAVGIESTIVDVT-RSPARVLRP 194

Query: 195 GGLEIETLKRAISVELEYCVDETSTPQS--PGMLKSHYAPRSQVRLRAIH------VNPR 246
           G +  E +   + V+    +      ++  PG    HYAPR+QV L   H          
Sbjct: 195 GHVTAEAIAALVPVQAAAGLVTAPAERAPSPGTHARHYAPRAQVALVPAHAVRGELDRAA 254

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
           +A  R G V   +         L   G     A  L+  +   +D+G   I  +++P   
Sbjct: 255 QAGSRAGAVEYGSRTATGPHAEL-LPGDPAGYAAALYAALHRLEDAGCDVIVIAAVPEDP 313

Query: 307 LGIAINNRLERAAA 320
              A+ +RL RA+A
Sbjct: 314 AWDAVRDRLTRASA 327


>gi|321248724|ref|XP_003191218.1| protein required for respiratory growth [Cryptococcus gattii WM276]
 gi|317457685|gb|ADV19431.1| Protein required for respiratory growth, putative [Cryptococcus
           gattii WM276]
          Length = 488

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 108/396 (27%), Positives = 157/396 (39%), Gaps = 99/396 (25%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + L +   +A+PTETVYGLA  S +P A + +Y+IK RP+ NPLI HVS ++M++
Sbjct: 64  LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLNMLR 123

Query: 72  KH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +      +  PL L L   FWPG        L      P      +T   R+P    T  
Sbjct: 124 RLLPPAYNFSPLYLALINAFWPG-----PLSLLFPSPSPPPPPAPQTNAIRMPSHPLTLA 178

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDGGISKIGLESTIVNVQ- 184
           LI     PL+ PSAN SG+ S T  +H+L+       +  IIDGG  ++G+EST+VN   
Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVLNDLNGADGLGCIIDGGDCEVGVESTVVNGLE 238

Query: 185 ----CEKKVRILRPGGLEIETLKRAISVELEYCVDETST--------------------- 219
                  KV ILRPGGL +E +K+ +  E++    +T                       
Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIVD-EVDGGEGKTEIFLLGKPWKRASFKHSSSTDSV 297

Query: 220 ----------------PQSPGMLKSHYAPRSQVRLRA----------------------- 240
                           P +PGM   HY+PR  V L                         
Sbjct: 298 KQNDVNFSTTPKVNLPPSTPGMKYRHYSPRVPVFLLKPSNVFPRPPALTSQSPSSTSAVL 357

Query: 241 ----------IHVNPREALIRFGNVPIKN----IENAIISLNLSKTGKLKEAAFNLFNYM 286
                          R  ++ F   P+        +    + +S       AA  LF  M
Sbjct: 358 REIVSNISSGSKSKKRIGVLHFEGSPLSKQLLLHTDEAELIPVSLGNSAASAAHRLFAGM 417

Query: 287 KIADD--------SGASSIAFSSIPNHGLGIAINNR 314
              +         SG  +I      ++GLG+A+  R
Sbjct: 418 LSLESIPSTEGQPSGVDAIVIEGCSDNGLGLAVMER 453


>gi|46445827|ref|YP_007192.1| hypothetical protein pc0193 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399468|emb|CAF22917.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 311

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 103/312 (33%), Positives = 154/312 (49%), Gaps = 13/312 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L A   +A+PTETVYGLA     P AI++++EIK R  +NPLI HV++   V 
Sbjct: 5   VEEAIEKLLANQLVAMPTETVYGLAARLTCPGAIKKIFEIKGRSLVNPLIIHVANPIDVC 64

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            +A ++ P    L   FWPGPLTL++ +     +  +  A L TA FR+P    T  +I 
Sbjct: 65  AYAIALPPHFDALTHAFWPGPLTLIVPIQ-LDLVDSIVRAGLPTAAFRMPSHPLTLHVIR 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL +PSAN SG+ S T+VKH+       + P ++DGG  + G+ESTI++ +  +  
Sbjct: 124 AVG-PLVMPSANLSGKPSSTDVKHV-EMDFGLDFP-VLDGGPCQEGVESTILHYRNSQ-W 179

Query: 190 RILRPGGLEIETLKRAISVELEY-CVDETSTPQSPGMLKSHYAPRSQVRL-RAIHVNPRE 247
            I R G L     +  +  E  Y  + +     SPG +  HYAP++ + L     +   +
Sbjct: 180 EIARLGALSATVFQPILGYEPIYQKIVKNDQIISPGQMFRHYAPQATLFLGDQKQITEAD 239

Query: 248 ALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAF-SSIPNHG 306
            ++ F     K+       L L       E A NL+  ++  D   A         P+ G
Sbjct: 240 FIVGFTE---KSYPVEKRVLYLGSLSNPHEVAENLYAVLRQLDFEKAKIAWVDMDFPSEG 296

Query: 307 LGIAINNRLERA 318
           L   I  RL RA
Sbjct: 297 LWKTIAERLSRA 308


>gi|330826999|ref|YP_004390302.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           K601]
 gi|329312371|gb|AEB86786.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           K601]
          Length = 332

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 100/345 (28%), Positives = 158/345 (45%), Gaps = 43/345 (12%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T  ++++ A   L  G  + +PTETVYGLA D+ N  A+ R++  K RPA +PLI 
Sbjct: 2   ILDGTLPSSVQAAARLLARGELLGLPTETVYGLAADADNDAAVARIFAAKGRPANHPLIV 61

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           HV+D + +  +A   PL +  L   FWPGPLTL+L  L        ST    +   R P 
Sbjct: 62  HVADSTAITHYAKEVPLFAQQLIDAFWPGPLTLILPRLPAA--ARASTGGQDSVGLRCPA 119

Query: 122 GFTK----KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
                      +    P   +A PSAN  G++S T  +H+ + +   E+ L++DGG   +
Sbjct: 120 HPVAHAVLAACQRLDPPVWGVAAPSANHFGKVSPTTAQHV-ADAFGDEL-LVLDGGACAV 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPR 233
           G+ESTI++      V +LRPG +    ++RA  +  L        TP++ G L +HYAP 
Sbjct: 178 GIESTIIDCTRGVPV-LLRPGAISRADVQRACGLRPLSKEELPAHTPRASGTLLAHYAPT 236

Query: 234 SQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI----- 288
           ++VRL                  +  +      L +     L+ A+  +   ++      
Sbjct: 237 ARVRLMDARQL---------QAGLDVLGADAAHLAVYARAPLRSASSRI--ILRRMPDDA 285

Query: 289 -------------ADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                         DD+GA  I   + P+      + +RL+RAAA
Sbjct: 286 AAAAQQLFAALRGFDDAGARLIWIETPPDTPDWEGVRDRLQRAAA 330


>gi|325192804|emb|CCA27207.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 370

 Score =  234 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 164/367 (44%), Gaps = 42/367 (11%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M +++  D+ ALR A   L +G  +A PTETVYGL  ++ +  A+  +++ K RP  +PL
Sbjct: 1   MAVLARFDAVALRDAAIQLKSGHLVAFPTETVYGLGANALDAEAVSLIFQAKGRPLTDPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I HV+          +          L++ FWPGPLT++    ++  I PL TAN     
Sbjct: 61  IVHVAKAEDALPLIQLTAKGHKLFSILSEKFWPGPLTIIAP--ASDRIPPLVTANTGFVG 118

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GIS 172
            R P      +L++    P+A PSANR G +S T  +H+++         ++D      S
Sbjct: 119 VRCPAHPVALELLQAAKIPIAAPSANRFGHVSPTCAQHVMNDLGHCANLTVLDDSNEETS 178

Query: 173 KIGLESTIVNVQ-CEKKVRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP 220
           ++G+EST++ +     +V I R GG   + L   +           +V ++      S+ 
Sbjct: 179 RVGIESTVIRIVPSMDQVWIYRRGGTSEDALSSVLQENQKQLEATYTVIVKANTTSESSA 238

Query: 221 Q---SPGMLKSHYAPRSQVRLRAIHVN--------------PREALIRFGNVPIKNIENA 263
           +   +PG L  HYAP  +  L  I  +                  ++            +
Sbjct: 239 KNQEAPGQLLKHYAPDVETHLIQICSDSNQNCALLTAEFDLAECVILDVNRQLAPFEAKS 298

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN--HGLGIAINNRLERAAA 320
           +   +LSK G + +A+  +F  ++ ++    A  +  + I +  H    A+ +R+ RAA+
Sbjct: 299 LAYRDLSKDGDITKASQLIFEALRWSESVPKAKKVLMADIEHISHQHTAALRDRMFRAAS 358

Query: 321 PRNQSQR 327
            + Q  +
Sbjct: 359 GKVQKLK 365


>gi|240275733|gb|EER39246.1| translation initiation protein Sua5 [Ajellomyces capsulatus H143]
          Length = 473

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 21/263 (7%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++  L +A E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RP+ NPLI H   
Sbjct: 57  EAKVLLEAAEALRTSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPSDNPLIVHQPK 116

Query: 67  ISMVKKHAS----------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
              ++              + P+   L   FWPGP+T +L   + + + P  T+ L+T  
Sbjct: 117 SRGLRLRTEGSQQGGKRNFIPPIYEPLISKFWPGPVT-ILPNQTPSPLAPEVTSTLRTFG 175

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI     PLA PSAN S + S T  +H+  + +   I +I+DGG   +G
Sbjct: 176 VRMPSSPVARLLIYLADRPLAAPSANASTKPSPTTAQHVY-ADLQGRINMILDGGPCGVG 234

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSH 229
           +EST+V+        +LRPGG+ IE ++     E       +  +     P +PGM   H
Sbjct: 235 VESTVVDGLL-YPPAVLRPGGIGIEEIRACPGWEDVQIGYKDGALQGKEVPLAPGMKYKH 293

Query: 230 YAPRSQVRLRAIHVNPREALIRF 252
           Y+P+++V L     +      + 
Sbjct: 294 YSPKAKVVLFEAGQDVETVKSKL 316



 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 264 IISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLERAA 319
           +  +++         A  LF+ ++  D+   S I    I +    L  AI NRL +AA
Sbjct: 412 LFDIDIGPDTD--SIARGLFSALRGLDEKNVSIIYVEGISDTEGDLAAAIMNRLRKAA 467


>gi|323304969|gb|EGA58723.1| Sua5p [Saccharomyces cerevisiae FostersB]
          Length = 337

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 136/279 (48%), Gaps = 29/279 (10%)

Query: 5   SITDSN---ALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           +ITD     AL +A   +      +A PTETVYGL   + N  ++  +Y+ K RP+ NPL
Sbjct: 33  TITDPETETALVEAARIIRDTDETVAFPTETVYGLGGSALNDNSVLSIYKAKNRPSDNPL 92

Query: 61  ICHVSDISMVKK-------------HASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIH 105
           I HVS I  + +               ++  +   L    WPGPLT++L + S+  + + 
Sbjct: 93  ITHVSSIDQLNRKVFNQPHLSGTSLFDNIPSIYRPLISSLWPGPLTILLPVPSSEHSALS 152

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L+TA+  T   R+P     + LI     P+A PSAN S + S T   H+    +  +IP
Sbjct: 153 KLTTADQPTFAVRIPANPVARALIALSDTPIAAPSANASTRPSPTLASHVY-HDLKDKIP 211

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR-------AISVELEYCVDET 217
           +I+DGG  K+G+EST+V+  C   + +LRPGG   E + +          VE +  V++ 
Sbjct: 212 IILDGGACKVGVESTVVDGLCNPPM-LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKG 270

Query: 218 STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
              ++PGM   HY+P ++V L   H      L     + 
Sbjct: 271 EKVRTPGMKYRHYSPSAKVVLLVPHCEGDGILKGXDRME 309


>gi|58263054|ref|XP_568937.1| cell growth and/or maintenance-related protein [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|57223587|gb|AAW41630.1| cell growth and/or maintenance-related protein, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 488

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 108/398 (27%), Positives = 155/398 (38%), Gaps = 103/398 (25%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + L +   +A+PTETVYGLA  S +P A + +Y+IK RP+ NPLI HVS + M++
Sbjct: 64  LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLDMLR 123

Query: 72  KH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +      S   L L L   FWPG        L      P  +   +T   R+P       
Sbjct: 124 RLLPPDYSFSSLYLALINAFWPG-----PLSLLFPSPSPPPSPAPQTNAIRMPSHPLALA 178

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDGGISKIGLESTIVNVQ- 184
           LI     PL+ PSAN SG+ S T  +H+ +       +  IIDGG   +G+EST+VN   
Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVWNDLNGSDGLGCIIDGGDCGVGVESTVVNGLE 238

Query: 185 ----CEKKVRILRPGGLEIETLKRAISVELEYCVDETS---------------------- 218
                  KV ILRPGGL +E +K+ +  E++    +T                       
Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIVD-EVDGGEGKTEILLLGKPWKGASFKHSSSTDPV 297

Query: 219 ---------------TPQSPGMLKSHYAPRSQVRLRA----------------------- 240
                           P +PGM   HY+PR  V L                         
Sbjct: 298 QQNDVNLLTTPKVNFAPSTPGMKYRHYSPRVPVFLLKPSNIFPRPPALMSPSSSSASAVL 357

Query: 241 ----------IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                          R  ++ F        + I   E  +I ++L     +  AA  LF 
Sbjct: 358 RQILSNISSDSKFKRRIGVLHFEGSPLSKQLLIDTDEAELIPVSLG--DSVASAAQRLFA 415

Query: 285 YMKIADD--------SGASSIAFSSIPNHGLGIAINNR 314
            M   +         SG  +I      + GLG+A+  R
Sbjct: 416 GMLTLESVPSTDGQPSGVDAIVIEGCSDDGLGLAVMER 453


>gi|134107902|ref|XP_777333.1| hypothetical protein CNBB1350 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260023|gb|EAL22686.1| hypothetical protein CNBB1350 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 488

 Score =  232 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 108/398 (27%), Positives = 155/398 (38%), Gaps = 103/398 (25%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + L +   +A+PTETVYGLA  S +P A + +Y+IK RP+ NPLI HVS + M++
Sbjct: 64  LEEASKHLHSHKTVAVPTETVYGLAASSLDPEACKMIYKIKNRPSDNPLIIHVSSLDMLR 123

Query: 72  KH----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +      S   L L L   FWPG        L      P  +   +T   R+P       
Sbjct: 124 RLLPPDYSFSSLYLALINAFWPG-----PLSLLFPSPSPPPSPAPQTNAIRMPSHPLALA 178

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDGGISKIGLESTIVNVQ- 184
           LI     PL+ PSAN SG+ S T  +H+ +       +  IIDGG   +G+EST+VN   
Sbjct: 179 LIAHSNLPLSAPSANSSGRPSPTKAQHVWNDLNGSDGLGCIIDGGDCGVGVESTVVNGLE 238

Query: 185 ----CEKKVRILRPGGLEIETLKRAISVELEYCVDETS---------------------- 218
                  KV ILRPGGL +E +K+ +  E++    +T                       
Sbjct: 239 WKEGGGGKVDILRPGGLGVEQIKKIVD-EVDGGEGKTEILLLGKPWKGASFKHSSSTDPV 297

Query: 219 ---------------TPQSPGMLKSHYAPRSQVRLRA----------------------- 240
                           P +PGM   HY+PR  V L                         
Sbjct: 298 QQNDVNLLTTPKVNFAPSTPGMKYRHYSPRVPVFLLKPSNIFPRPPALMSPSSSSASAVL 357

Query: 241 ----------IHVNPREALIRF------GNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
                          R  ++ F        + I   E  +I ++L     +  AA  LF 
Sbjct: 358 RQILSNISSDSKFKRRIGVLHFEGSPLSKQLLIDTDEAELIPVSLG--DSVASAAQRLFA 415

Query: 285 YMKIADD--------SGASSIAFSSIPNHGLGIAINNR 314
            M   +         SG  +I      + GLG+A+  R
Sbjct: 416 GMLTLESVPSTDGQPSGVDAIVIEGCSDDGLGLAVMER 453


>gi|118389926|ref|XP_001028008.1| Sua5/YciO/YrdC/YwlC family protein [Tetrahymena thermophila]
 gi|89309778|gb|EAS07766.1| Sua5/YciO/YrdC/YwlC family protein [Tetrahymena thermophila SB210]
          Length = 434

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 52/348 (14%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+   +   +++A E L  G  ++ PTETVYGL  ++ +  A++ ++  K RP  +P+I
Sbjct: 31  QILDDKNEEDMKQAGELLRNGKLVSFPTETVYGLGANALDEEAVKSIFLAKNRPLTDPVI 90

Query: 62  CHVSDISMVKKHASVDP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            H+           + P    +   LA  FWPGPLT++L       I  + TA       
Sbjct: 91  VHIDKKEDGLNFVEITPGIKEVYDFLADNFWPGPLTMILKANFNI-IPRVVTAQTDFVGI 149

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG----GIS 172
           R P     ++LI     P+A PSAN    +S T+  H+ +    + I +I D        
Sbjct: 150 RCPQHEVARRLIRIAQRPIAAPSANLFAHVSPTSAVHVFNDFYDQNISIINDPVQELPSC 209

Query: 173 KIGLESTIVNVQ----------CEKKVRILRPGGLEIETLKRAIS-------------VE 209
           + G+EST+V ++           +  + ILR G L  E + +AIS              +
Sbjct: 210 EFGIESTVVKIEEIASSNQQENSKFNLVILRFGSLSGEQIAQAISKSDQFKDRITIVKKK 269

Query: 210 LEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAII---- 265
            E  V E    ++PG L  HY+P     L  +  +  +  +++  +   NI+ +II    
Sbjct: 270 KENKVAEHIHSEAPGQLLKHYSPYINCYLFHLRSSDDKQDLKYPLLNDINIKESIIFDYK 329

Query: 266 ------------SLNLSKTGKLKEAAFNLFNYMKIA---DDSGASSIA 298
                        ++LS+ G ++E    L++ ++ A   D +    I 
Sbjct: 330 NQTEHLKDKCMKYISLSEKGDMREIMTKLYDSLRWAENVDAAKNILIY 377


>gi|260891996|ref|YP_003238093.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4]
 gi|260864137|gb|ACX51243.1| Sua5/YciO/YrdC/YwlC family protein [Ammonifex degensii KC4]
          Length = 338

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 16/327 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           AL +A E L  G  +A PTETVYGL   +    A+RR++ +K RPA  PL  H++D   V
Sbjct: 17  ALEEAGELLRRGELVAFPTETVYGLGAAATQDEALRRVFAVKGRPARKPLTLHLADPEEV 76

Query: 71  KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            ++    P  +  L   FWPGPLTL+L   + + + P  TA  +T   RVP     ++LI
Sbjct: 77  FRYVKEVPSTARRLISSFWPGPLTLILP--AASGLPPSLTAGGETVGIRVPDHAVAQELI 134

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G PLA PSAN SG+ + T   H+L+  +  +I  ++DGG + +G+EST+V V+ E+ 
Sbjct: 135 RMAGLPLAAPSANLSGRPAPTKAAHVLAE-LGGKIAGVLDGGPTPLGIESTVVEVRGEE- 192

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTP---QSPGMLKSHYAPRSQV-RLRAIHVN 244
           + + R G L  E ++    ++      E       ++P +L     P   V R+ A    
Sbjct: 193 LVVRRVGALLPEEIEERTGIKPLVAPAEGEGRWWLKAPLVLVEGEVPEQVVARVLAEASR 252

Query: 245 PREALIRFGNVPIKN---IENAIISLNLSKTGK-LKEAAFNLFNYMKIADDSGASSIAFS 300
                 R G +  +    +     +L   +     +  A   +  ++  ++     I   
Sbjct: 253 QDRVGRRVGVLTREERVGLYQPFTALACGRVEDGPRSVAAAFYAALRDIEER-VEIIVAE 311

Query: 301 SIPNHGLGIAINNRLERAAAPRNQSQR 327
           ++    +G  +  RL   AA R ++ R
Sbjct: 312 AVVAE-VGKVVLLRLREMAAERYEAGR 337


>gi|310790728|gb|EFQ26261.1| yrdC domain-containing protein [Glomerella graminicola M1.001]
          Length = 448

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 86/259 (33%), Positives = 131/259 (50%), Gaps = 26/259 (10%)

Query: 12  LRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           LR A E++     P+A PTETVYGL  D+    A++ ++  K RP+ NPLI HV D+ M+
Sbjct: 42  LRDAAEYMRTQDTPVAFPTETVYGLGADATRSGAVKGIFSAKGRPSDNPLISHVCDLDML 101

Query: 71  KKHAS----------------VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           +                    +  +   L + FWPGPLT++L     + + P  TA L++
Sbjct: 102 RGLLRPERQTMHGDVAAETDPIPEIYKPLIEKFWPGPLTILLRNPEPSKLAPEVTAGLES 161

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P       LI+    PLA PSAN S + S T  +H+    +   I LI+DGG  +
Sbjct: 162 FGVRMPSSPLALTLIKLAAAPLAAPSANASTKPSPTTAQHVY-HDLEGRIGLILDGGACQ 220

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE------LEYCVDETSTPQSPGMLK 227
           +G+EST+V+  C+  V +LRPGG+ +E L+     E       +      S P++PGM  
Sbjct: 221 VGVESTVVDGLCDPPV-VLRPGGVSMEELRSCAGWEGVVKAYKDASETGRSAPRAPGMKY 279

Query: 228 SHYAPRSQVRLRAIHVNPR 246
            HY+P+++V L        
Sbjct: 280 KHYSPKAKVVLYEWSCKAG 298



 Score = 70.9 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 250 IRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG-LG 308
           ++ G +     +     L++   G  +  A  LF+ ++  D  GAS I    I +   + 
Sbjct: 373 VKEGELQDAEKKPMARVLDIDLGGDTRGIAQGLFSALRDLDRRGASVIFVDGIDDRNDIA 432

Query: 309 IAINNRLERAAA 320
            A+ NRL +AA+
Sbjct: 433 EAVMNRLRKAAS 444


>gi|322505247|emb|CBZ14756.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 382

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 167/371 (45%), Gaps = 53/371 (14%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +  T    LR+A + L  G  +AIPTETVYGL  ++   +A +R+Y +K RP  +PL
Sbjct: 1   MAQIIGTSLEDLRRAADALLQGKLVAIPTETVYGLGGNALIESAAKRIYTVKGRPPTDPL 60

Query: 61  ICHVSDISMVKKHASV------DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           ICHV ++  V++   +        L+  +    WPGPLT+V     +  +    T     
Sbjct: 61  ICHVCNLDGVRRLWDLKWDEGAVELACAIGAALWPGPLTIVFKANPS--LPDCVTGGSGY 118

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGI 171
              R+P    T KL+E    P+A PSAN  G +S T  +H+    +    P  LIIDGG 
Sbjct: 119 VGARIPNNAITLKLLEMVDVPVAAPSANTFGHVSPTTSQHVY-DDLAARDPELLIIDGGQ 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE-----------TSTP 220
           S +G+EST+  V+ +  V +LR G + +  + RAI+        E           T+  
Sbjct: 178 SSVGIESTVAKVESKDLVVVLRRGCITVSMIHRAIAERYPQTRVEVRDMRIMCGSMTAPM 237

Query: 221 QSPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIK 258
           +SPG L +HY+PR    L                      + +       ++ F     +
Sbjct: 238 ESPGQLLTHYSPRVPSSLLTPGSLAMLTASAGVPVYVHRGKDVVPLSETIVLDFNGYLSR 297

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI-------PNHGLGIA 310
             ++ +   ++S  G  +E  F +F+ ++  +   GA S+ F  I        N  L  A
Sbjct: 298 FRDSCLSYHDMSPDGNPEEGCFAVFDALRATETVKGAKSLVFPFISEWPHDKENEDLLAA 357

Query: 311 INNRLERAAAP 321
           + +RL RAA+ 
Sbjct: 358 MEDRLFRAASG 368


>gi|320591982|gb|EFX04421.1| translation initiation protein sua5 [Grosmannia clavigera kw1407]
          Length = 452

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 129/258 (50%), Gaps = 29/258 (11%)

Query: 10  NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            ++  A  +L      +  PTETVYGLA D    +A+R ++ +K RP+ NPLI HV D+ 
Sbjct: 42  ESVATAARYLRETDVPVGFPTETVYGLAADVTRSSAVRGIFSVKGRPSDNPLIVHVCDLD 101

Query: 69  MVKKHA---------SVDPLSLHLAKLFWPGPLTLVLDLLSTTD----IHPLSTANLKTA 115
           MV+             +  +   L + FWPGPLT++LD+  +      + P  TA L+T 
Sbjct: 102 MVRGLLGTGEDGQPRELPAIYRPLVERFWPGPLTILLDVPDSGSGRWTLAPEVTAGLRTF 161

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     + LI     PLA PSAN S + S T  +H++   +   I  ++DGG   +
Sbjct: 162 GCRLPDSPLARTLIRLAQAPLAAPSANASTRPSPTTAQHVV-DDLDGRIVAVLDGGPCAV 220

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL------------EYCVDETSTPQS 222
           G+EST+V+  CE  V +LRPGG+ +  L+     E                    + P++
Sbjct: 221 GVESTVVDGLCEPPV-VLRPGGISMAQLRSVPGWEKVQRAYRDQSAGQPVDGTTATAPRA 279

Query: 223 PGMLKSHYAPRSQVRLRA 240
           PGM   HY+P+++V L  
Sbjct: 280 PGMKYKHYSPKARVVLYE 297



 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 224 GMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLF 283
           G L     P    R +     P             +   A   L L         A  LF
Sbjct: 351 GQLLRPIGPIGGNRGQKTEQAPGHTATYRLEAFALDGTTAATVLELDLGRDQASVAHGLF 410

Query: 284 NYMKIADDSGASSIAFSSI--PNHGLGIAINNRLERAAA 320
           + ++  D  GA  I    +      +  A+ NRL +AA+
Sbjct: 411 SGLRDLDARGADVILVEGLDDRADDIAAAVMNRLRKAAS 449


>gi|326319262|ref|YP_004236934.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323376098|gb|ADX48367.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 336

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 30/335 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +++  A   L AG  + +PTETVYGLA D+ +  A+ +++E K RP+ +PLI HV+   
Sbjct: 8   PSSIDAAARALRAGQLLGLPTETVYGLAADAASDAAVAQIFEAKGRPSDHPLIVHVAGSE 67

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +    AS+   +  L + FWPGPLTL+L  L   D    +     +   R P     + 
Sbjct: 68  GIPHFAASIPAFAEALVRAFWPGPLTLILPRLP--DRAAAAAGGQDSVGLRCPAHPVAQA 125

Query: 128 IETY---------GHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
           +            G P   +A PSANR G++S T  +H+          L++DGG   +G
Sbjct: 126 VLKACASDDPALGGQPVHGVAAPSANRFGRVSPTTAQHVQGEFGDGL--LVLDGGPCTVG 183

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETSTPQSPGMLKSHYAPRS 234
           +ESTI++      V +LRPG +    +  A   V L      + TP++ G L++HYAP +
Sbjct: 184 IESTIIDCTRGVPV-LLRPGAITRAEIAAACGLVPLSKEELPSHTPRASGTLEAHYAPSA 242

Query: 235 QVRLRAIHV---------NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           +VRL                   L  +   P+++  + ++   + +              
Sbjct: 243 KVRLMDAKALRAGLELLGADARHLAVYARAPLRSPSSGVVLRRMPEAAAAAAQELF--AA 300

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           ++  DD+G   I   + P       + +RL+RAAA
Sbjct: 301 LRDFDDAGVKLIWVETPPETPDWEGVRDRLQRAAA 335


>gi|299117058|emb|CBN73829.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 453

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/405 (23%), Positives = 164/405 (40%), Gaps = 91/405 (22%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   L +A   L +G  +A PTETVYGL  ++ +  A+ ++++ K+RP  +PLI HV D 
Sbjct: 51  EEPWLTEAGARLRSGKLVAFPTETVYGLGANALSEDAVLKIFQAKQRPLTDPLIVHVPDT 110

Query: 68  SMVKKHASVD------PLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +        +        +  L     +  WPGPLTL+    +   + P  TA       
Sbjct: 111 AGALAVVDFEVEGGGGQKARRLLDLLGEKLWPGPLTLI--AKADKKVPPCITAGTGFVGV 168

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---GISK 173
           R P    T++L+   G P+A PSANR G +S T   H++   +     L++DG   G   
Sbjct: 169 RCPAHPVTRQLLSIAGVPVAAPSANRFGHVSPTQAMHVM-EDLGGSDILVLDGDTSGACG 227

Query: 174 IGLESTI--VNVQCEKKVRILRPGGLEIETLKRAI------------------------- 206
           +G+EST+  ++   + ++ ILR GG+  + ++ A+                         
Sbjct: 228 VGIESTVAKIDAAND-RILILRMGGVTQDRIRDALKEGGEEFSGISVYAGSVAGGKTEAK 286

Query: 207 -----------SVELEYCVDETSTP-----------QSPGMLKSHYAPRSQVRLRAIHVN 244
                      S++ E   DE   P            + G L  HY+P  +V        
Sbjct: 287 GEEEREREARGSLKDEPAKDEGQAPGLMRQLCAISDATTGQLLRHYSPDLEVFRVLGATP 346

Query: 245 PREALIRFGNVPIKNI--------------------ENAIISLNLSKTGKLKEAAFNLFN 284
              +    G   + ++                     +A+   +LS  G   EAA  LF 
Sbjct: 347 GSTSGRMVGGGELADLASMARTSVVVDFAGQLKGLQASAVAYSDLSIEGSADEAAKGLFR 406

Query: 285 YMKIADDSG-ASSIAFSSIP---NHGLGIAINNRLERAAAPRNQS 325
            ++ A+    A  +  + +P   N  +  A+N+R+ R+A+ +  S
Sbjct: 407 ALRWAETQPSAQRLLIAGLPSKSNGDMAAAVNDRIYRSASGKTIS 451


>gi|167909744|ref|ZP_02496835.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112]
          Length = 252

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 14/243 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 11  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 71  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 128

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 186

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 187 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 245

Query: 240 AIH 242
           A  
Sbjct: 246 AFE 248


>gi|299136790|ref|ZP_07029973.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8]
 gi|298601305|gb|EFI57460.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8]
          Length = 343

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 99/349 (28%), Positives = 156/349 (44%), Gaps = 47/349 (13%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   D   + +A + L +G  +A  TETVYGL  D+ +  A+ R++E K+RP+ +PLI H
Sbjct: 6   LHAEDPGDVSRAADLLRSGGTVAFATETVYGLGADALSEAAVARIFEAKQRPSWDPLIVH 65

Query: 64  VSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           ++  + +    +V+         LA+ FWPGPLTL+L       +    TA       RV
Sbjct: 66  LASATEISSITNVEGELQRRVNLLAETFWPGPLTLLLPR--KVVVPDSVTAGRPLVGVRV 123

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L++  G P+A PSAN  G  S T   H+L + +   I  ++D G + +GLES
Sbjct: 124 PSHPAALALLQAAGLPIAAPSANTFGHTSPTTAAHVL-ADLEGRIDAVLDAGPTSVGLES 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELE---YCVDETSTPQ----SPGMLKSHYA 231
           T+++   +  + + RPG +  E +  A  V +E        T+ P+    SPG+   HYA
Sbjct: 183 TVLD-PAQTPMVLYRPGAVTAEQIAAATGVPVEIFRVAGMSTAQPKESLPSPGVGIRHYA 241

Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKI--- 288
           PR+++ L           +R   V  +  E   +   L    +L   A      +     
Sbjct: 242 PRARLILVEGSEEALRQTLR--EVLSQGGERVGVL--LPDGWRLDAVA------LVEPWA 291

Query: 289 ------------------ADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
                              DD GA+ I      + GL  AI +RLE+AA
Sbjct: 292 AWEDQAALAAALFAGLRALDDRGATIILCPLPLSGGLKDAIRDRLEKAA 340


>gi|42521964|ref|NP_967344.1| putative translation factor related to Sua5 [Bdellovibrio
           bacteriovorus HD100]
 gi|39574494|emb|CAE77998.1| putative translation factor related to Sua5 [Bdellovibrio
           bacteriovorus HD100]
          Length = 338

 Score =  226 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 104/338 (30%), Positives = 169/338 (50%), Gaps = 27/338 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ + AL KA   L+ G  I  PTETVYGLA     P+AI +++  K+RP  +PLI HV+
Sbjct: 2   MSPNEALAKAKIILEEGGVIGFPTETVYGLAARIDIPSAIEKIFTTKERPFFDPLIVHVA 61

Query: 66  DISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
            I   KK  A   P S  LA+ FWPGPLT+VL    +  ++ + T+ L++   R+P    
Sbjct: 62  SIEQAKKVTAFWGPASQALAEAFWPGPLTMVLPRDPS--VNAMITSGLESVGIRMPNHPL 119

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L++  G PLA PSAN+ G+ S T+  H+       E   ++DGG  +IG+EST++ V
Sbjct: 120 ALELLQQVGVPLAAPSANKFGRTSPTSASHV-RVEFKNENVFVVDGGDCEIGIESTVLLV 178

Query: 184 QCEKK---VRILRPGGLEIETLKRAISVE-LEY-CVDETSTPQSPGMLKSHYAPRSQVRL 238
           +   +   + ILR G +    L R +  + L Y  +++    +SPG +K HY P   + +
Sbjct: 179 RHRPEGVMLSILRRGHILKSDLARVLEEKGLAYEFIEQVDKRESPGHMKHHYMPPVPLVV 238

Query: 239 RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG---------KLKE----AAFNLFNY 285
                   E++++  N  I  + + I S+ + K           KL E    A    + +
Sbjct: 239 CLDPSRSPESVLKEVNEKIGELPDEIESIKIIKPKAGIHSYEVLKLSEDPLLATREFYGH 298

Query: 286 MKIADDSGASSIAF--SSIPNHGL-GIAINNRLERAAA 320
           ++     G   I F   +    G    ++ +RL +AA+
Sbjct: 299 LRDVAARGKDCILFYREA-HQTGERWESLFDRLNKAAS 335


>gi|167917766|ref|ZP_02504857.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           BCC215]
          Length = 263

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 127/259 (49%), Gaps = 15/259 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244

Query: 240 AIH-VNPREALIRFGNVPI 257
           A   + P  A  R    P+
Sbjct: 245 AFERLEPLLAAARDTGEPV 263


>gi|241563383|ref|XP_002401681.1| sua5, putative [Ixodes scapularis]
 gi|215501873|gb|EEC11367.1| sua5, putative [Ixodes scapularis]
          Length = 227

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 79/214 (36%), Positives = 118/214 (55%), Gaps = 5/214 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E++ +G  + +PTETVYG+  D+ N  A  ++++ K RPA+NPLI HV+ I   K
Sbjct: 16  ISKAVEYIKSGKVVVLPTETVYGIGADATNNEACLKIFQFKNRPAINPLIVHVASIEQAK 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +    + L+  +A+ FWPGPL++V+ L    +I P  T  L T   R+P      +LI  
Sbjct: 76  EIGEFNDLATKIAEKFWPGPLSIVVPLKVNANIAPSVTVGLNTIAIRMPSYPLALELIRQ 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKK 188
            G P+A PSAN S  IS TNV+H+           I+   I  S+ GLESTI++      
Sbjct: 136 SGVPIAAPSANPSNYISPTNVEHVTKHFSENAEIFILAPEIYQSEYGLESTIID-TTTVT 194

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
             ILR G +  E L+  + V++     ETST ++
Sbjct: 195 PTILREGFITAEILEEVLGVKV-LKASETSTIKA 227


>gi|167822943|ref|ZP_02454414.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 9]
          Length = 260

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 14/243 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 11  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 71  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 128

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 129 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 186

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 187 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 245

Query: 240 AIH 242
           A  
Sbjct: 246 AFE 248


>gi|167901498|ref|ZP_02488703.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 255

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 14/243 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244

Query: 240 AIH 242
           A  
Sbjct: 245 AFE 247


>gi|145478343|ref|XP_001425194.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392263|emb|CAK57796.1| unnamed protein product [Paramecium tetraurelia]
          Length = 425

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 157/364 (43%), Gaps = 58/364 (15%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L  A + L  G  +A PTETVYGL  +++N  AI  +++ KKRP  +PLI HV D + 
Sbjct: 54  DELHIAAQLLHQGELVAFPTETVYGLGANAKNAQAILNIFKAKKRPLSDPLIVHVHDKNN 113

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +  +          A+LFWPGP T+VL      +   + +A   +   R+P      +L+
Sbjct: 114 I--YTDKPDFLDSFAELFWPGPFTIVLKST-QLETTEILSAGTGSIGIRIPNHKVALELL 170

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+A PSAN    IS T+  H+ +    + +  IID G S  G+EST++     + 
Sbjct: 171 EKANLPVAAPSANLFTHISPTSAAHVFNDFYDQRV-HIIDAGRSDNGIESTVIKPLGNE- 228

Query: 189 VRILRPGGLEIETLKRAISVELEY-----------------------------CVDETST 219
           + ILR G L  ET+ + I    +                               ++  ++
Sbjct: 229 LHILRLGSLAKETIMKKIGQSDKLKHFAIKYENKYMQIEETEEDIEKELEELNVLERKNS 288

Query: 220 PQSPGMLKSHYAPRSQVRLRAIHVN----------PREALIRFGNVPIKNIEN--AIISL 267
            ++PG    HY+ R    +     N              +I FG+     I +   I   
Sbjct: 289 MEAPGQFLKHYSARINSFIVTFQSNTIGQQIDLDLKESVIIDFGSELKNRIADLDEIKYK 348

Query: 268 NLSKTGKLKEAAFNLFNYMKIAD-DSGASSIAFSSIP---------NHGLGIAINNRLER 317
           +LS+    KEA FNL++ ++ A+   GA  I               +  + ++I +++ R
Sbjct: 349 SLSENYDAKEAMFNLYDSLRWAELQQGAKQILLYDFDTQINQKVQNDENV-LSIQDKIFR 407

Query: 318 AAAP 321
           +A+ 
Sbjct: 408 SASG 411


>gi|167814478|ref|ZP_02446158.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91]
          Length = 245

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/241 (33%), Positives = 121/241 (50%), Gaps = 14/241 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244

Query: 240 A 240
           A
Sbjct: 245 A 245


>gi|167893038|ref|ZP_02480440.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894]
          Length = 257

 Score =  225 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 14/243 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHYAPRSQVRLR 239
           +++       +LRPG +    +   + V        + + P++ G LK+HYAPR+ + L 
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRASGTLKAHYAPRTPLALA 244

Query: 240 AIH 242
           A  
Sbjct: 245 AFE 247


>gi|123473197|ref|XP_001319788.1| Sua5/YciO/YrdC/YwlC family protein [Trichomonas vaginalis G3]
 gi|121902579|gb|EAY07565.1| Sua5/YciO/YrdC/YwlC family protein [Trichomonas vaginalis G3]
          Length = 350

 Score =  224 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 151/347 (43%), Gaps = 30/347 (8%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +  T    L  A + ++AG  +A PTETVYGL        A+ +++  K RP  +PL
Sbjct: 1   MAKVLTTSEEDLTIAAKQINAGGLVAFPTETVYGLGAH-LEEKALAQIFAAKHRPYSDPL 59

Query: 61  ICHVSDISMVKKHASVDPLS----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I H +     KK+  +          LA  FWPGP+TLV    +T  + PL  A      
Sbjct: 60  ITHFATAEAAKKYLILTDEESANFDKLAAAFWPGPMTLVAP--ATKAVPPLVMAGTGCVG 117

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP      + +E  G P+A PSAN  G +S T   H++         L+I GG + IG
Sbjct: 118 VRVPSHPIAHRFLEICGEPVAAPSANLFGHVSPTTCDHVMYDLGQTPDLLVISGGNATIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +EST++ +   K + +LRPG +    +++ I   +           SPG    HYAP   
Sbjct: 178 IESTVLRLHG-KNITVLRPGFITAGQVEQVIPGSVTRDAGVQEKLASPGHETRHYAPNMP 236

Query: 236 VRL-----------RAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFN 284
             L           + + + P   LI F           +   +LS  G + +A  N++N
Sbjct: 237 TYLVRKQGSKDAVEQTVSLTPDTVLIDFNRTFSTASSQVLRYFDLSPVGNVADAVRNVYN 296

Query: 285 YMKIAD-DSGAS-SIAFSSIP--------NHGLGIAINNRLERAAAP 321
            ++ A+   GA   I    +         ++ L  ++ +RL R+A+ 
Sbjct: 297 VLRDAEVTPGAKQCIIADILESGNHDDTHDNELCNSLRDRLLRSASH 343


>gi|114567901|ref|YP_755055.1| hypothetical protein Swol_2395 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338836|gb|ABI69684.1| translation factor SUA5 [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 318

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/329 (26%), Positives = 148/329 (44%), Gaps = 39/329 (11%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   + A   +A PTETVYGL   +    A+ +++  K R   NPL+ H+S +  V+  
Sbjct: 2   QAASLIKAQELVAFPTETVYGLGAAAFQSQAVEKIFLAKGRAETNPLLLHLSCMEQVESV 61

Query: 74  A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           A  + P ++ L + FWPGPL+++L    T  +  +      T   R+P       LI+  
Sbjct: 62  AKEIPPAAIMLMERFWPGPLSIILPARET--VPAIVRGGKTTVGLRMPAHPVALALIDQA 119

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PLA PSAN SG+ S    +H+  + +  +I  I+D G + +GLESTI+++      RI
Sbjct: 120 G-PLAAPSANLSGRPSPVTAEHV-KADLDGKIAAILDAGPTGLGLESTIIDLSNPG-YRI 176

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           LR GG+ +E L++A+ + +     E            HY   S++ L        + L  
Sbjct: 177 LRQGGITVEELEKAMGMSITVNNPEQE-------HFPHYQIESKLLLCQSWEEMDDYLSN 229

Query: 252 FGNVPIK-------------------NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS 292
              +  K                   +      S +L     L  A   L++ ++ A++ 
Sbjct: 230 IEQLEKKLVLVHTYIDKNDTRWEKLIDKYPQYQSYDL----DLNTATNRLYSLLREAEER 285

Query: 293 GASSIAFSSIPNHGLGIA-IN-NRLERAA 319
               + F+ +     GIA +  +R+ +AA
Sbjct: 286 EIELLLFTPLHKKLGGIARVMLDRIYQAA 314


>gi|322500549|emb|CBZ35626.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 386

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 162/371 (43%), Gaps = 53/371 (14%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +  T    LR+A + L  G  +AIPTETVYGL  ++   +A++ +Y +K RP  +PL
Sbjct: 1   MAQIIGTSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPL 60

Query: 61  ICHVSDISMVKKHAS--VDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           ICHV  +   +K      D  ++ LA       WPGPLT+V     T  +    T     
Sbjct: 61  ICHVYTLDGARKLWDLKWDEGAVELACTIGAALWPGPLTIVCKASPT--LPDCVTGGSGY 118

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGI 171
              R+P    T KL+E    P+A PSAN  G +S T  +H+    +    P  LIIDGG 
Sbjct: 119 VGARIPNNPITLKLLEMADVPVAAPSANTFGHVSPTTAQHVY-DDLAARDPELLIIDGGQ 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCV---DETSTPQ 221
           S IG+EST+  V+    V +LR G + +  + RAI+       VE+       D    P 
Sbjct: 178 SAIGIESTVAKVEANDLVVVLRRGCITVSMIHRAIADRYPQTRVEIRDTRIMCDPAKAPM 237

Query: 222 -SPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIK 258
            SPG L +HY+P     L                      + +       ++ F     +
Sbjct: 238 VSPGQLLTHYSPHVPSSLLTPGSLAALTASADVPVYVHRGKDVVPLCETVVLDFNGYLSR 297

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLGIA 310
             +  +   ++S  G  +E  + +F+ ++  +   GA  + F  I           L  A
Sbjct: 298 FRDTCLFYHDMSPDGNPEEGCYAVFDALRATETIKGAKGLVFPLISEWPHDKAKEDLLTA 357

Query: 311 INNRLERAAAP 321
           + +RL RAA+ 
Sbjct: 358 MEDRLFRAASG 368


>gi|146092262|ref|XP_001470247.1| hypothetical protein [Leishmania infantum]
 gi|134085041|emb|CAM69442.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 386

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 164/371 (44%), Gaps = 53/371 (14%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +  T    LR+A + L  G  +AIPTETVYGL  ++   +A++ +Y +K RP  +PL
Sbjct: 1   MAQIIGTSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPL 60

Query: 61  ICHVSDISMVKKHAS--VDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           ICHV  +   +K      D  ++ LA       WPGPLT+V     T  +    T     
Sbjct: 61  ICHVYTLDGARKLWDLKWDEGAVELACTIGAALWPGPLTIVCKASPT--LPDCVTGGSGY 118

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGI 171
              R+P    T KL+E    P+A PSAN  G +S T  +H+    +    P  LIIDGG 
Sbjct: 119 VGARIPNNPITLKLLEMADVPVAAPSANTFGHVSPTTAQHVY-DDLAARDPELLIIDGGQ 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCV---DETSTPQ 221
           S IG+EST+  V+ +  V +LR G + +  + RAI+       VE+       D T  P 
Sbjct: 178 SAIGIESTVAKVEAKDLVVVLRRGCITVSMIHRAIADRYPQTRVEIRDTRIMCDPTKAPM 237

Query: 222 -SPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIK 258
            SPG L +HY+P     L                      + +       ++ F     +
Sbjct: 238 VSPGQLLTHYSPHVPSSLLTPGSLAALTASADVPVYVHRGKDVVPLCETVVLDFNGYLSR 297

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPN-------HGLGIA 310
             +  +   ++S  G  +E  + +F+ ++  +   GA  + F  I           L  A
Sbjct: 298 FRDTCLFYHDMSPDGNPEEGCYAVFDALRATETIKGAKGLVFPLISEWPHDKAKEDLLTA 357

Query: 311 INNRLERAAAP 321
           + +RL RAA+ 
Sbjct: 358 MEDRLFRAASG 368


>gi|322493293|emb|CBZ28578.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 382

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 172/370 (46%), Gaps = 54/370 (14%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+  T  + LR+A + L  G  +AIPTETVYGL  ++   +A +R+Y +K RPA++PLI
Sbjct: 3   QIIGTTPED-LRRAADALLEGKLVAIPTETVYGLGGNALIESAGKRIYAVKGRPAIDPLI 61

Query: 62  CHVSDISMVKKHAS--VDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           CHV  +  V+K      D  ++ LA       WPGPLT+V     +  +    T      
Sbjct: 62  CHVYSLDGVRKLWDLKWDEGAVELACTIGAALWPGPLTIVCKASPS--LPGCVTGGSGYV 119

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGIS 172
             R+P    T KL+E    P+A PSAN  G +S T  +H+    +    P  LIIDGG S
Sbjct: 120 GARIPNNPITLKLLEMVDVPVAAPSANTFGHVSPTTAQHVY-DDLAARDPELLIIDGGQS 178

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEYCV---DETSTPQ- 221
            IG+EST+  V+ +  V +LR G + +  + RAI+       VE+       D T TP  
Sbjct: 179 AIGIESTVAKVESKDLVVVLRRGRITVSMIHRAIADSYPQTRVEIRDTRIMYDSTKTPMV 238

Query: 222 SPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIKN 259
           SPG L +HY+P     L                      + +       ++ F     + 
Sbjct: 239 SPGQLLTHYSPSVPSSLLTPGSLAALTAAADVPVYVHRGKDVVPLCETIVLDFNGYLSRF 298

Query: 260 IENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSI-------PNHGLGIAI 311
            +  +   ++S  G  +E  F +F+ ++  +   GA S+ F  I       P   L  A+
Sbjct: 299 RDTCLSYHDISPDGNPEEGCFAVFDALRATETVKGAKSLVFPLISEWPHDKPKEDLLAAM 358

Query: 312 NNRLERAAAP 321
            +RL RAA+ 
Sbjct: 359 EDRLFRAASG 368


>gi|226325557|ref|ZP_03801075.1| hypothetical protein COPCOM_03362 [Coprococcus comes ATCC 27758]
 gi|225206040|gb|EEG88394.1| hypothetical protein COPCOM_03362 [Coprococcus comes ATCC 27758]
          Length = 412

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 32/247 (12%)

Query: 100 STTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
               +   +T  L+T   R+P     ++LI   G  ++ PSAN SG+ S T  +H+ +  
Sbjct: 5   KNEKVPLGTTGGLETVAVRMPDDEIARELILAGGGYVSAPSANTSGRPSPTTAQHV-AED 63

Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET- 217
           +  +I +I+DGG   IG+ESTI+++     + ILRPG +  E L   I    E  VDET 
Sbjct: 64  LSGKIEMILDGGSVDIGVESTILDMTVTPPM-ILRPGAITKEMLSEVIG---EVAVDETL 119

Query: 218 ------STPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI----------- 260
                   P++PGM   HYAP++++ +  +   P EA+     +  + +           
Sbjct: 120 ISENSTKAPKAPGMKYRHYAPKAEMII--VDGEPEEAVRAIKQIAYEQVRLGYKVGIIAS 177

Query: 261 ------ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNR 314
                     +   +      K  A NL+  ++  D+     I   + P  G+G AI NR
Sbjct: 178 NESVDQYTTGVVKCIGSRVNEKTVARNLYKVLREFDEEEVDYIYSEAFPEAGIGTAIMNR 237

Query: 315 LERAAAP 321
           L +AA  
Sbjct: 238 LGKAAGH 244


>gi|209881512|ref|XP_002142194.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209557800|gb|EEA07845.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 393

 Score =  219 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 156/372 (41%), Gaps = 57/372 (15%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  I D   + +  ++L  G  +AIPTETVYGL  ++ N  +I  +Y+IK RP  NPL
Sbjct: 1   MKISDIGDDICVEEYVKYLLDGDLVAIPTETVYGLGGNAFNQKSILDIYKIKGRPKNNPL 60

Query: 61  ICHVSDISMVKKHA-----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           ICHV      +         V+ +   LA  FWPGPL+L+      ++I     A     
Sbjct: 61  ICHVYSFEQAELQVFELTHKVNVVYKQLAFKFWPGPLSLI--GKKKSEIIEDV-ALSGKV 117

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-------SICKEIPLII 167
             R P    T K I+    P+A PSANRSG IS TN +HI+          I   I ++ 
Sbjct: 118 AVRCPNNGLTLKFIKMANVPIAAPSANRSGHISPTNPQHIIKEFTEQYMREIGVNIWILY 177

Query: 168 DGGISKIGLESTIVN-VQCEKKVRILRPGGLEIETLKRAI--------------SVELEY 212
           D     IG+EST++  V+   ++ I RPG +    +   +               + + Y
Sbjct: 178 DRDCCNIGVESTVIEYVEDTNEIIIYRPGAISKCDILNCLTKDNQFIKSQSWIKDINIRY 237

Query: 213 CVDET---STPQSPGMLKSHYAPRSQVRLRAIHVN------------PREALIRFGNVPI 257
              E      P SPGM   HY+P     L  +  N                +I  G+   
Sbjct: 238 FSRENRDLDLP-SPGMDIKHYSPIVSTFLIKVTDNLLSSAKPINTNIQNIIIIDIGHKLE 296

Query: 258 KNIENAIISLNLSK-TGKLKEAAFNLFNYMKIADDS--------GASSIAFSSI-PNHGL 307
                  + ++LS+     K+A  NLFN +  A+D             I      P   +
Sbjct: 297 FLTSEVGVYMSLSEYEDDFKQACRNLFNSLHKAEDMALSKFPDPNKVKIFLMGFKPQDDI 356

Query: 308 GIAINNRLERAA 319
             A+ +RL RA+
Sbjct: 357 SSALWDRLYRAS 368


>gi|291001607|ref|XP_002683370.1| predicted protein [Naegleria gruberi]
 gi|284096999|gb|EFC50626.1| predicted protein [Naegleria gruberi]
          Length = 380

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/380 (25%), Positives = 158/380 (41%), Gaps = 76/380 (20%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L  G  ++ PTETVYGL  ++ +  A+  +++ KKRP  +P+I HV D+   KK
Sbjct: 1   EECSEHLRNGGLVSFPTETVYGLGANALDEKAVYSIFKAKKRPLTDPVIVHVLDVDQAKK 60

Query: 73  HASVDP------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           + +++       L  HLA  FWPGPLTLV        I    TA+      RVP     +
Sbjct: 61  YITIEENSLHMRLYEHLAATFWPGPLTLVSKSNEQV-IPDCVTASTGFVGIRVPAHPIIR 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------------- 171
           KL+E    P++ PSANR G IS T   H++          I +  +              
Sbjct: 120 KLLEHCKLPISAPSANRFGHISPTRASHVMEDLGLYGKDEIDNENVFRILVLEEENNSES 179

Query: 172 ---SKIGLESTIVNVQCEK----KVRILRPGGLEIETLKR-----------------AIS 207
                +G+EST+  +   +    K+ +LR GG+ +E LK+                  + 
Sbjct: 180 KTECSVGIESTVAKISELEDKSLKIEVLRRGGISLEQLKKSVQEFILEESNTRGTIPEVK 239

Query: 208 VELEYCV-----DETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA-------------- 248
           VE  +       ++ +   +PG L +HYAP     +     +   A              
Sbjct: 240 VEARHQTYSVKMNDNTAQIAPGQLITHYAPYVPAFILDSQTSVNCAASEKTTRVSIEDSI 299

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN-LFNYMKIADD-SGASSIAFSSIP--- 303
           L+ FG        + +  ++LS +  +   A N +F  ++  +    A +I    +P   
Sbjct: 300 LVDFGGKLNHLSSHCMHYIDLSPSSDIN-IARNKVFQVLRDCEKIENAKAIL---LPNLL 355

Query: 304 --NHGLGIAINNRLERAAAP 321
             +     ++ +RL RAA+ 
Sbjct: 356 NVDIEHADSLFDRLFRAASG 375


>gi|120613197|ref|YP_972875.1| translation factor SUA5 [Acidovorax citrulli AAC00-1]
 gi|120591661|gb|ABM35101.1| translation factor SUA5 [Acidovorax citrulli AAC00-1]
          Length = 336

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 143/316 (45%), Gaps = 30/316 (9%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKL 86
           PTETVYGLA D+ +  A+ +++E K RP+ +PLI HV+    +    ASV P +  L + 
Sbjct: 27  PTETVYGLAADAASDAAVAQIFEAKGRPSDHPLIVHVAGPEGIPHFAASVPPFAEALVRA 86

Query: 87  FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY---------GHP--- 134
           FWPGPLTL+L  L   D    +     +   R P     + +            G P   
Sbjct: 87  FWPGPLTLILPRLP--DRAAAAAGGQNSVGLRCPAHPVAQAVLKACASDDPALGGQPVHG 144

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           +A PSANR G++S T  +H+        +  ++DGG   +G+ESTI++      V +LRP
Sbjct: 145 VAAPSANRFGRVSPTTAQHVQDEFGEGLV--VLDGGPCAVGIESTIIDCTRGVPV-LLRP 201

Query: 195 GGLEIETLKRAISV-ELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV---------N 244
           G +    +  A  +  L      + TP++ G L++HYAP ++VRL               
Sbjct: 202 GAITRAEIAAACGLSPLSKEELPSHTPRASGTLEAHYAPSAKVRLMDAKALQAGLELLGA 261

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPN 304
               L  +    +++    ++   + +              ++  DD+G   I   + P 
Sbjct: 262 EARHLAVYARARLRSPSPGVVLRRMPEDAAAAARELF--AALRDFDDAGVKLIWVETPPE 319

Query: 305 HGLGIAINNRLERAAA 320
                 + +RL+RAAA
Sbjct: 320 TPDWEGVRDRLQRAAA 335


>gi|219115932|ref|XP_002178761.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|219115936|ref|XP_002178763.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409528|gb|EEC49459.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409530|gb|EEC49461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 357

 Score =  216 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 40/341 (11%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  ++ PTETVYGL   + +  A R+++  K+RP  +PLI HV++ +  ++      
Sbjct: 12  LRRGDLVSFPTETVYGLGCHALDELACRKVFAAKERPLTDPLIVHVNEEAKAQELWQATA 71

Query: 79  LSLH------LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETY 131
            SL       L   FWPGPLTLV    +T+ +  +  A       R P     + LI + 
Sbjct: 72  DSLEGRILACLIHEFWPGPLTLV--AKATSSVPSVLMAGTGFVACRSPSHPTARALIASA 129

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR- 190
           G P+A PSAN+ G +S T   H+      +++ ++ +    ++G+ES++  ++ + K R 
Sbjct: 130 GVPIAAPSANKFGHVSPTCADHVFDDLRYEDVWIVEEDEPLQVGVESSVAKLEMQDKARG 189

Query: 191 ---ILRPGGLEIETLKRAI------SVELE----YCVDETSTPQSPGMLKSHYAPRSQVR 237
              +LR G + +  L+R +      SV++         +     +PG    HY+P     
Sbjct: 190 VLTVLRQGAISVLDLQRCLRKANIDSVQVRANTSRSTSDEEANVAPGQTVRHYSPNIPSF 249

Query: 238 LRAIHVN------------PREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNY 285
           L + +                  ++ +G   +   E      +LS      +AA  +F+ 
Sbjct: 250 LVSKYCVESYMNDGNQSKLADTVIVDYGETMLSWKEYCAAYRDLSSVADSTKAAQAVFDT 309

Query: 286 MKIADD-SGASSIAFSSIPNHGLG----IAINNRLERAAAP 321
           ++ A+   GAS + F  +          +A+ ++L RAA+ 
Sbjct: 310 LRWAEQVEGASRVLFPDLEVDDESDALILAVKDKLTRAASG 350


>gi|284161228|ref|YP_003399851.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM
           5631]
 gi|284011225|gb|ADB57178.1| Sua5/YciO/YrdC/YwlC family protein [Archaeoglobus profundus DSM
           5631]
          Length = 289

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 42/306 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + LR+    +  G  +A PTETVYGL  ++ +  A++RL+E+K RP   P+   VSD+
Sbjct: 13  DESVLREVAHMIKEGKLVAYPTETVYGLGTNALDENAVKRLFEVKGRP-KKPVSVVVSDL 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
             V++ A  +  +L L + F+PGP+T+++       I P+ TA       R+P      K
Sbjct: 72  DHVERIAEPNETALKLMEKFFPGPITIIV--KKKKVIPPIVTAGTDKIGIRLPDYKIPLK 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L E  G P+   SAN SG+ S T  +HI+   + K I  I+D G + + +EST+++   E
Sbjct: 130 LAEFSGVPVTSTSANVSGKPSPTKPEHIMVDFMGK-IDAILDAGETPLKIESTVIDTTTE 188

Query: 187 KKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPR 246
              R+LR G L +  +++ +  E+E                  Y P+++V          
Sbjct: 189 -PPRVLRVGALPLNEIEKVVG-EVEVLD------------YRAYKPKAKVVAVFKGDVEE 234

Query: 247 EALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG 306
            A    G V I                 +KE   +L + ++         I F  I    
Sbjct: 235 VASRFEGRVCI-----------------IKEV-KDLMDVLRRC--KDCDVIVFECID--- 271

Query: 307 LGIAIN 312
           L  A+ 
Sbjct: 272 LSEAVR 277


>gi|224000475|ref|XP_002289910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975118|gb|EED93447.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 410

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 48/356 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L  A E L +G  ++ PTETVYGL   + +P A++R+++ K+RP  +PLI HV+   + 
Sbjct: 51  SLTTAGERLRSGHLVSFPTETVYGLGCHALDPVAVQRVFDAKERPLSDPLIVHVTSQQIQ 110

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +           L   F+PGPLT+V     +  I  +  AN      R P     + LI+
Sbjct: 111 QMQQLEKQALQTLTASFFPGPLTIVAKAKPS--IPQILMANTGYVACRSPSHPIARALIK 168

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-EKK 188
               P+A PSAN+ G +S T  +H++   + +E   I D  + ++G+EST+         
Sbjct: 169 CAKCPIAAPSANKFGHVSPTLARHVM-DDLGREDVWISDSAVCQVGVESTVAKDNGFVGS 227

Query: 189 VRILRPGGLEIETLKRAIS-------VELEYCV---DETSTPQSPGMLKSHYAPRSQVRL 238
           + +LR G +    ++ A+         +++  V    E     +PG    HY+P     +
Sbjct: 228 ITVLRHGAISSAAIRVALKQSNLDQYFDVKDAVQYTPENVNNVAPGQTVKHYSPNVPCFM 287

Query: 239 RAIHVNP-----------------REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN 281
                                   +  +I +    +    +A+   +LS  G    AA N
Sbjct: 288 VGSSRQQSADTTAVVTEEEKSILSQSVIIDYAQSLLHYQPHALAYRDLSTDGNSNIAASN 347

Query: 282 LFNYMKIADDSG------ASSIAFSSIPNH-------GLG---IAINNRLERAAAP 321
           +F  ++ ++            I               G G   +A+ ++L RAA+ 
Sbjct: 348 VFAVLRWSESIEGAIRVFVPEIVLEDGEEEGRSVGGKGEGALVLAVKDKLTRAASG 403


>gi|328463675|gb|EGF35267.1| Sua5/YciO/YrdC/YwlC family protein [Lactobacillus rhamnosus MTCC
           5462]
          Length = 272

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 15/263 (5%)

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
            ++A++ P +  L   FWPGPLT++L++L    +    T  L+TA FR P    T+KLI 
Sbjct: 1   SQYATITPDAAKLMDTFWPGPLTIILNILPGR-LSMKVTGGLQTAAFRNPDDALTRKLIA 59

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T G P+  PSAN SG+ S T   H+L   +  +I  ++D G +++G+ESTI+++      
Sbjct: 60  TAGVPIVGPSANTSGKPSPTTADHVL-HDLADKIAGVLDDGPTRVGVESTIIDLTVTPPA 118

Query: 190 RILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE 247
            ILRPG +    L+  +       + V +   P++PGM   HYAP +QV +        +
Sbjct: 119 -ILRPGAIGPHELEPLLGPVDSAAHHVGKNEAPKAPGMKYKHYAPAAQVVVVDTIDQFDD 177

Query: 248 ALI-------RFGNVPIKNIENAIISLNLSKTG-KLKEAAFNLFNYMKIAD-DSGASSIA 298
           A+         FG +    I      +     G  +  A   LF  ++  D     + + 
Sbjct: 178 AVAWAKKTGQAFGLLATDPILAHFPDVPSYSLGQDITSATHALFAGLRWFDLHPDVTLVL 237

Query: 299 FSSIPNHGLGIAINNRLERAAAP 321
             +  +  L  A  NRL ++A  
Sbjct: 238 AQAFSHSELSAAYMNRLLKSAGN 260


>gi|157871880|ref|XP_001684489.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127558|emb|CAJ05637.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 386

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 102/374 (27%), Positives = 160/374 (42%), Gaps = 59/374 (15%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +  T    LR+A + L  G  +AIPTETVYGL  ++   +A++ +Y +K RP  +PL
Sbjct: 1   MAQIIGTSPEDLRRAADALVQGKLVAIPTETVYGLGGNALIGSAVKSIYAVKGRPPTDPL 60

Query: 61  ICHVSDISMVKKHAS--VDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           ICHV  +    +      D  ++ LA       WPGPLT+V     T  +    T     
Sbjct: 61  ICHVYTLDGACRLWDQKWDEGAVELACTIGAALWPGPLTIVCKANPT--LPDCVTGGSGY 118

Query: 115 ACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGI 171
              R+P      KL+E    P+A PSAN  G +S T  +H+    +    P  LIIDGG 
Sbjct: 119 VGARIPNNPVALKLLEMVDAPVAAPSANTFGHVSPTTAQHVY-DDLAARDPELLIIDGGQ 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-------VELEY----CVDETSTP 220
           S IG+EST+  V+ +  V +LR G + +  + RAI+       VE+      C    +  
Sbjct: 178 SAIGIESTVAKVESKDLVVVLRRGCITVSMIHRAIAGRYPQTRVEIRDTRIMCDPAKALM 237

Query: 221 QSPGMLKSHYAPRSQVRL----------------------RAIHVNPREALIRFGNVPIK 258
            SPG L +HY+P     L                      + +       ++ F     +
Sbjct: 238 VSPGQLLTHYSPHVPSSLLTPGSLGALTASADVPVYVHRGKDVVPLCETIVLDFNGYLSR 297

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNHGLG--------- 308
             +  +   ++S  G  +E  + +F+ ++  +   GA  + F  I               
Sbjct: 298 FKDACLSYHDMSPDGNPEEGCYAVFDALRATETVKGAKGLVFPLISE---WPHAKAKADL 354

Query: 309 -IAINNRLERAAAP 321
             A+ +RL RAA+ 
Sbjct: 355 LAAMEDRLFRAASG 368


>gi|167835602|ref|ZP_02462485.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           MSMB43]
          Length = 231

 Score =  208 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 111/231 (48%), Gaps = 14/231 (6%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  +  + +A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H+
Sbjct: 6   PIPTAEQIDEAAGLLDAGELVAFPTETVYGLGGDAQNPAAVARIYAAKGRPANHPVIVHL 65

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +  S        +   +  L   FWPGPLTL+L   +   I    +    +   R P   
Sbjct: 66  APGSDPGYWVDSLPADAQKLIDAFWPGPLTLILKRAAH--IPDAVSGGQDSVGLRCPSHP 123

Query: 123 FTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
             + L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+
Sbjct: 124 VAQALLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGI 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGML 226
           ESTI+++       +LRPG +    +   + V        + + P++ G L
Sbjct: 182 ESTILDLSRGFPA-LLRPGQVTPRQIADVLGVAPRLPDGSDATAPRASGTL 231


>gi|160872705|ref|ZP_02062837.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli]
 gi|159121504|gb|EDP46842.1| Sua5/YciO/YrdC family protein [Rickettsiella grylli]
          Length = 307

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 13/309 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  +N L  A   L AG  I +PTETVY LA D+ N  AI +++ +K+RP   PL   ++
Sbjct: 1   MITNNELASAVSCLKAGKLIVLPTETVYALAGDATNLNAILQIFSLKRRPLNQPLSVLLA 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               + + A  +  ++  LA+ FWPGPLTL+L    T  + P  T        RVP    
Sbjct: 61  KEHPMTRWARDIPEVAEKLAERFWPGPLTLILKKEKT--VLPELTGGQHKIGLRVPDHPI 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + ++ ++   +A PSANRS  +S T++KH+  +   + +  +IDGG  +IG+ESTI++V
Sbjct: 119 AQAVLSSFARGVAAPSANRSTALSPTHIKHV-RAEFDQPLEWMIDGGPCRIGIESTIIDV 177

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV-RLRAIH 242
                 RILR G L +  +      E+E     +   + P + +    P+  +  +   H
Sbjct: 178 TFTIP-RILRLGALPLAKIASITPYEIEKSTSPSCFSKKPLITQ---VPKQVLDEVIDTH 233

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
           +N  + L  F   P K     +  + +            L++Y+  +  +    I   ++
Sbjct: 234 LNHYQPLTVFAFSPAKKKHKNVTWIQMPSEASR--YGQQLYHYLHQS-KAMHHRILVEAV 290

Query: 303 PNHGLGIAI 311
           P       I
Sbjct: 291 PKRNHWAGI 299


>gi|11497366|ref|NP_051465.1| hypothetical protein BBU11 [Borrelia burgdorferi B31]
 gi|11497448|ref|NP_051542.1| hypothetical protein BB_T06 [Borrelia burgdorferi B31]
 gi|216264952|ref|ZP_03436942.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           156a]
 gi|6382387|gb|AAF07698.1|AE001582_6 conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|6435847|gb|AAF08548.1|AE001583_3 conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|34734011|gb|AAQ81893.1| conserved hypothetical protein [Borrelia burgdorferi]
 gi|215980592|gb|EEC21401.1| putative Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi
           156a]
          Length = 330

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 22/335 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I   +  + A + +  G  I  PT+TVY +  +  +  A+R +  +KK+    PL
Sbjct: 1   MIKTPIISEDQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           + +V  I  +K+ +S  P S   L + F PGPLT VL    +  I      NL T   R+
Sbjct: 61  MLYVDTIEKIKELSSHVPKSAKILMEKFSPGPLTYVL--KKSIKIPKFINNNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIG 175
           P       LI    +PL + SAN S + S T+    L   +   +  II       S IG
Sbjct: 119 PKNKTALNLIRKLKNPLVVSSANLSKRPSSTSFSMALKE-LNGLVGGIIMPKKNKDSNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +ESTI+    +  V ILRPG +  + +++ +    +    + +       LK  ++ R +
Sbjct: 178 IESTIIEFDSKDNVIILRPGAITKKMIEKVLGSRYKVNYAKETKID----LKKMFSYRLR 233

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286
           + +               N  +    +       S             L E A NL+  +
Sbjct: 234 IPVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKEL 293

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A +     +    + N  LG AINNR+ +A++ 
Sbjct: 294 VNA-EEKYDQVIVEIVENEELGYAINNRIVKASSN 327


>gi|124027648|ref|YP_001012968.1| hypothetical protein Hbut_0770 [Hyperthermus butylicus DSM 5456]
 gi|123978342|gb|ABM80623.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
          Length = 214

 Score =  204 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 5/201 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   +  G  +  PT+TVYGL  +  +  A+ R++  K+RP+  P+   VS +   +
Sbjct: 17  IRVAARIVALGGLVVYPTDTVYGLGANPFSSYAVWRVFRAKERPSNRPIPVLVSSLRAAE 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           K A +D  +  LA+ FWPGPLT+V+   +   +  L  A       RVP      K IE 
Sbjct: 77  KIAELDDRARRLAERFWPGPLTIVVP--AKPGLPSLLHAGTGRIGVRVPNHPIALKFIEA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  +   SAN   + S   V+  +   +   + + +DGG +  G  ST+V++   K  R
Sbjct: 135 VGGAITGTSANLHRKPSPCTVQEAMK-QLGCRVDIYLDGGPTPGGTPSTVVDLTTPKP-R 192

Query: 191 ILRPGGLEIETLKRAISVELE 211
           ++R G +  E ++  ++  +E
Sbjct: 193 LVRRGPIPPEEIEAVLATPIE 213


>gi|167737355|ref|ZP_02410129.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 14]
          Length = 228

 Score =  203 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 108/224 (48%), Gaps = 14/224 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSP 223
           +++       +LRPG +    +   + V        + + P++ 
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRAS 228


>gi|167844511|ref|ZP_02470019.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           B7210]
          Length = 227

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 14/223 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 70  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+       +   ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDAVHVLDGGPSDVGIESTI 185

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQS 222
           +++       +LRPG +    +   + V        + + P++
Sbjct: 186 LDLSRGFPA-LLRPGHVSPRQIADVLGVAPRLPDGSDATAPRA 227


>gi|300087769|ref|YP_003758291.1| Sua5/YciO/YrdC/YwlC family protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527502|gb|ADJ25970.1| Sua5/YciO/YrdC/YwlC family protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 205

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 7/208 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++++   + L+ A + L  G  +A PT+TVY LA    + +AI R+++IK R     L
Sbjct: 1   MSVINM--ESKLKTATQILVDGGIVAFPTDTVYCLAAAICHESAIERIFQIKGRQTTKAL 58

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V+D   +++ A V  ++  L + F PG LTL+L       +  L T    T   R+P
Sbjct: 59  PVLVADSIQMRQVAEVSSVAEMLVRRFMPGALTLILPKKP--LVPDLVTGGKPTVAVRIP 116

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI+  G PL   SAN SG+ S+T    +  S I   I  I+DGG+   G+EST
Sbjct: 117 GHTLALYLIKAVGSPLTGTSANLSGRGSVTTAMEV-ESQIGGRIDSIVDGGLCPGGIEST 175

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS 207
           IV++      R++R G +  E +++ I 
Sbjct: 176 IVDLTGLTP-RLVRSGAVPKEEIEKIIG 202


>gi|312148920|gb|ADQ31566.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi JD1]
          Length = 330

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 137/335 (40%), Gaps = 22/335 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I   +  + A + +  G  I  PT+TVY +  +  +  A+R +  +KK+    PL
Sbjct: 1   MIKTPIISEDQFKIALKLIKMGEIIVFPTDTVYSIGANIYDEYAVRMINLVKKKSINEPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           + +V  I  +K+ +S  P S   L + F PGPLT VL    +  I      NL T   R+
Sbjct: 61  MLYVDTIEKIKELSSHVPKSAKILMEKFSPGPLTYVL--KKSIKIPKFINNNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIG 175
           P       LI    +PL + SAN S + S T+    L   +   +  II       S IG
Sbjct: 119 PKNKTALNLIRKLKNPLVVSSANLSKRPSSTSFSMALKE-LNGLVGGIIMPKKNKDSNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +ESTI+    +  V ILRPG +  + +++ +    +    + +       LK  ++ R +
Sbjct: 178 IESTIIEFDSKDNVIILRPGAITKKMIEKVLGSRYKVNYAKETKID----LKKMFSYRLR 233

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286
           + +               N  +    +       S             L E A NL+  +
Sbjct: 234 IPVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKEL 293

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A +     +    + N  LG AINNR+ +A++ 
Sbjct: 294 VNA-EEKYDQVIVEIVENEELGYAINNRIVKASSN 327


>gi|224796796|ref|YP_002642475.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23]
 gi|224554416|gb|ACN55801.1| Sua5/YciO/YrdC/YwlC family protein [Borrelia burgdorferi WI91-23]
          Length = 330

 Score =  202 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 136/335 (40%), Gaps = 22/335 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I      + A + +  G  I  PT+TVY +  +  +  A+R +  +KK+    PL
Sbjct: 1   MIKTPIISEYQFKIALKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMINLVKKKSINEPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           + +V  I  +K+ +S  P S   L + F PGPLT VL    +  I      NL T   R+
Sbjct: 61  MLYVDTIEKIKELSSHVPKSAKILMEKFSPGPLTYVL--KKSIKIPKFINNNLDTVAIRI 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIG 175
           P       LI    +PL + SAN S + S T+    L   +   +  II       S IG
Sbjct: 119 PKNKTALNLIRKLKNPLVVSSANLSKRPSSTSFSMALKE-LNGLVGGIIMPKKNKDSNIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           +ESTI+    +  V ILRPG +  + +++ +    +    + +       LK  ++ R +
Sbjct: 178 IESTIIEFDSKDNVIILRPGAITKKMIEKVLGSRYKVNYAKETKID----LKKMFSYRLR 233

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGK---------LKEAAFNLFNYM 286
           + +               N  +    +       S             L E A NL+  +
Sbjct: 234 IPVHTFKRGDNIRKYLKTNTKVLITRDTFKFYFFSFLWDKKNIILFDSLIEYAENLYKEL 293

Query: 287 KIADDSGASSIAFSSIPNHGLGIAINNRLERAAAP 321
             A +     +    + N  LG AINNR+ +A++ 
Sbjct: 294 VNA-EEKYDQVIVEIVENEELGYAINNRIVKASSN 327


>gi|69249629|ref|ZP_00605027.1| SUA5 [Enterococcus faecium DO]
 gi|68194108|gb|EAN08648.1| SUA5 [Enterococcus faecium DO]
          Length = 235

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 18/229 (7%)

Query: 109 TANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           T  L TA FR+P    T ++IE  G PL  PSAN SG+ S T   H+    +  +I  II
Sbjct: 2   TGGLSTAAFRIPDNKKTLEVIELSGVPLVGPSANTSGKPSPTTADHVY-HDLQGKITGII 60

Query: 168 DGGISKIGLESTIVNVQCEKK-VRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSP 223
           D G ++IG+EST++++        ILRPG +  E ++  I   +   ++ V E  TP++P
Sbjct: 61  DDGATRIGVESTVLDLSDPTAMPMILRPGAVTKEQIEAVIESPVAIDQHLVKENETPKAP 120

Query: 224 GMLKSHYAPRSQVRLRAI------HVNPREALIRFGNVPIKNIENAI----ISLNLSKTG 273
           GM   HY+P ++V +             +   IR G +    I + +     ++ +    
Sbjct: 121 GMKYKHYSPDTRVLMVRDGDWSTAVQWAKNKKIRAGVIASPEIADQVRTDTAAVYMYNDN 180

Query: 274 KLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++ AA  LF  ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 181 SVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 229


>gi|67623713|ref|XP_668139.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54659320|gb|EAL37902.1| hypothetical protein Chro.10272 [Cryptosporidium hominis]
          Length = 389

 Score =  201 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 89/360 (24%), Positives = 144/360 (40%), Gaps = 59/360 (16%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            +++  G  +AIPTETVYGL  ++ + ++I ++++IK RP  NPLICHV      + +  
Sbjct: 8   AKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAEDNVF 67

Query: 76  VDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                       L   FWPGPLT++       +I    + + K    R P    T  L++
Sbjct: 68  ELSERTRVIYKILTDKFWPGPLTVI--SKKRRNIVDEVSVSGK-VGVRCPNNQLTLDLLK 124

Query: 130 TYGHPLAIPSANRSGQISITNVKHI---LSSSICKEI---PLIIDGG-ISKIGLESTIVN 182
               P+A PSANRSG IS T+  H+      S   E+     I+DGG    +G+EST++ 
Sbjct: 125 LSSVPIAAPSANRSGHISPTSPLHVSKEFDQSYMNEVGIKVWILDGGECCSVGVESTVLE 184

Query: 183 VQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP---------- 220
              +   + I R G +    +   +            +++ Y     S+P          
Sbjct: 185 YYEDGNFISIFRCGKVTKNQIWETLIDNCRNNEWIKDIKISYFGSNNSSPNRNYLSLHDT 244

Query: 221 --QSPGMLKSHYAPRSQVRLRAIHVN-----------PREALIRFGNVPIKNIENAIISL 267
              SPGM   HY+P    +L +   +               LI  G+             
Sbjct: 245 VAISPGMDIKHYSPTICTKLISFISDTHKCTGIDVDLRNIILIDIGSKLSFLRYYVRHYF 304

Query: 268 NLSKTGKLKEAAFNLFNYMKI-------ADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319
           +L        A  NLF  +          DD  +  I  +       + +A+ +R+ RA+
Sbjct: 305 SLCDDYDFSSACKNLFATLHQAEDFANSLDDLSSVYIFITGFETEDNISLALWDRVYRAS 364


>gi|323508601|dbj|BAJ77194.1| cgd1_2420 [Cryptosporidium parvum]
 gi|323510581|dbj|BAJ78184.1| cgd1_2420 [Cryptosporidium parvum]
          Length = 389

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 145/362 (40%), Gaps = 59/362 (16%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            +++  G  +AIPTETVYGL  ++ + ++I ++++IK RP  NPLICHV      + +  
Sbjct: 8   AKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAEDNVF 67

Query: 76  VDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                       L   FWPGPLT++       +I    + + K    R P    T  L++
Sbjct: 68  ELSERTRVIYKILTDKFWPGPLTVI--SKKRHNIVDEVSVSGK-VGVRCPNNQLTLDLLK 124

Query: 130 TYGHPLAIPSANRSGQISITNVKHI---LSSSICKEI---PLIIDGG-ISKIGLESTIVN 182
               P+A PSANRSG IS T   H+      S   E+     I+DGG    +G+EST++ 
Sbjct: 125 LSSVPIAAPSANRSGHISPTTPLHVSKEFDQSYMNEVGIKVWILDGGECCSVGVESTVLE 184

Query: 183 VQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP---------- 220
              +   + I R G +  + +   +            +++ Y     S+P          
Sbjct: 185 YYEDGNFISIFRCGKVTKKQIWETLIDNCRNNEWIKEIKISYFGSNNSSPNRNYLSLHDT 244

Query: 221 --QSPGMLKSHYAPRSQVRLRAIHVN-----------PREALIRFGNVPIKNIENAIISL 267
              SPGM   HY+P    +L +   +               LI  G+             
Sbjct: 245 VAISPGMDIKHYSPTICTKLISFISDTNKYTGINVDLRNIILIDIGSKLSFLRCYVRHYF 304

Query: 268 NLSKTGKLKEAAFNLFNYMKI-------ADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319
           +L        A  NLF  +          DD  +  I  +       + +A+ +R+ RA+
Sbjct: 305 SLCDDYDFSLACKNLFATLHQAEDFANSLDDLSSVYIFITGFETEDNISLALWDRVYRAS 364

Query: 320 AP 321
           + 
Sbjct: 365 SG 366


>gi|66362214|ref|XP_628071.1| SUA5 like RNA binding domain containing protein [Cryptosporidium
           parvum Iowa II]
 gi|46227629|gb|EAK88564.1| SUA5 like RNA binding domain containing protein [Cryptosporidium
           parvum Iowa II]
          Length = 390

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 145/362 (40%), Gaps = 59/362 (16%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            +++  G  +AIPTETVYGL  ++ + ++I ++++IK RP  NPLICHV      + +  
Sbjct: 9   AKYILNGELVAIPTETVYGLGGNAYDRSSILKIFKIKGRPINNPLICHVHSFKFAEDNVF 68

Query: 76  VDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                       L   FWPGPLT++       +I    + + K    R P    T  L++
Sbjct: 69  ELSERTRVIYKILTDKFWPGPLTVI--SKKRHNIVDEVSVSGK-VGVRCPNNQLTLDLLK 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHI---LSSSICKEI---PLIIDGG-ISKIGLESTIVN 182
               P+A PSANRSG IS T   H+      S   E+     I+DGG    +G+EST++ 
Sbjct: 126 LSSVPIAAPSANRSGHISPTTPLHVSKEFDQSYMNEVGIKVWILDGGECCSVGVESTVLE 185

Query: 183 VQCEKK-VRILRPGGLEIETLKRAI-----------SVELEYCVDETSTP---------- 220
              +   + I R G +  + +   +            +++ Y     S+P          
Sbjct: 186 YYEDGNFISIFRCGKVTKKQIWETLIDNCRNNEWIKEIKISYFGSNNSSPNRNYLSLHDT 245

Query: 221 --QSPGMLKSHYAPRSQVRLRAIHVN-----------PREALIRFGNVPIKNIENAIISL 267
              SPGM   HY+P    +L +   +               LI  G+             
Sbjct: 246 VAISPGMDIKHYSPTICTKLISFISDTNKYTGINVDLRNIILIDIGSKLSFLRCYVRHYF 305

Query: 268 NLSKTGKLKEAAFNLFNYMKI-------ADDSGASSIAFSSIP-NHGLGIAINNRLERAA 319
           +L        A  NLF  +          DD  +  I  +       + +A+ +R+ RA+
Sbjct: 306 SLCDDYDFSLACKNLFATLHQAEDFANSLDDLSSVYIFITGFETEDNISLALWDRVYRAS 365

Query: 320 AP 321
           + 
Sbjct: 366 SG 367


>gi|258592148|emb|CBE68453.1| conserved protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 195

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 6/197 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM-V 70
           + +A   L +G  +A PT+T+Y L  D+ NP A+ R++E K R  + P+   V+D++M +
Sbjct: 1   MAQAASVLRSGGLVAFPTDTLYALGADASNPLAVERVFEAKGRSLIKPIPLLVADLTMAI 60

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
           +    +   ++ LA+ +WPGPLTLV+    T  +  L TA       RVP       LI 
Sbjct: 61  QLVGELPEAAVRLAERWWPGPLTLVVTAPRT--VCALLTAETGRIGLRVPDSAVALALIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+   SANRSGQ    N   +L   +  ++ L++DGG    G  ST+++V  +  +
Sbjct: 119 QFGGPVTGTSANRSGQKDPMNAYEVL-HQLGDQVDLVLDGGPVVGGSPSTVIDVTTDPPI 177

Query: 190 RILRPGGLEIETLKRAI 206
            I+R G +  E +   +
Sbjct: 178 -IMREGPIRQEEILSVL 193


>gi|323448739|gb|EGB04634.1| hypothetical protein AURANDRAFT_12057 [Aureococcus anophagefferens]
          Length = 357

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 48/355 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L +G   A PTETVYGL  ++ +  A+RR++E+K+RP  +PLI HV++     
Sbjct: 1   VEECGRVLASGGLCAFPTETVYGLGANALDEAAVRRIFEVKRRPLSDPLIVHVAEPEDAL 60

Query: 72  KHASV-------DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               +         + + L + FWPGPLTLV    +   +     A   T   R P    
Sbjct: 61  GLVDLGGARAAAHKVFVTLTRAFWPGPLTLVCP--ARNHLPACLGAGTGTVGVRCPSHGL 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG---------GISKI 174
            + LI   G P+A PSAN  G +S T  +H++   +      ++DG              
Sbjct: 119 ARALIGAAGVPVAAPSANLFGHVSPTRAQHVV-DDLGASELHVLDGSAAGEFGGDPPCAH 177

Query: 175 GLESTIVNVQCEK------KVRILRPGGLEIETLKRAIS----VELEYCVDETSTPQ-SP 223
           G+EST+  +           + + R G +    L+RA++     EL   V +   P+ +P
Sbjct: 178 GIESTVCAIAPAPGRDDAVVLTVYRRGAVAATALERAVADEPDAELRAAVAKLVVPECAP 237

Query: 224 GMLKSHYAPRSQVRLRAIHVNPR------------EALIRFGNVPIKNIENAIISLNLSK 271
           G L +HYAP+    L ++                   ++ FG       + A+   +LS 
Sbjct: 238 GQLLTHYAPKIPAALVSLVAEAGADDAKSDAYVAQCVVVDFGGRLAALEDVALAYRDLSA 297

Query: 272 TGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNH----GLGIAINNRLERAAAP 321
            G    AA  LF  ++ A+D   A ++  + +       GL   + +R+ RA + 
Sbjct: 298 AGDAAAAAAALFETLRWAEDVPKAKNVFIADLQAEKASPGLIAGVADRVYRATSG 352


>gi|95929617|ref|ZP_01312359.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684]
 gi|95134314|gb|EAT15971.1| Sua5/YciO/YrdC/YwlC [Desulfuromonas acetoxidans DSM 684]
          Length = 204

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 98/195 (50%), Gaps = 6/195 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L     IA PT+T+YG+  D  N   I+++Y++K+R    P     SD+S + 
Sbjct: 15  IDQVVECLRRDGVIAYPTDTIYGVGCDIFNKKGIKKIYQLKRRDVKKPFSFICSDLSEIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++A V  ++  + K   PGP T VLD  ++  +  L     +T   R+P    T +++  
Sbjct: 75  RYAHVSNMAFKIMKRHLPGPYTFVLD--ASRVVPDLVMTKQRTVGIRMPDNAITLEIVRQ 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            GHPL   SAN SG  +      ++     K + +++DGG    G  ST+++++ ++ + 
Sbjct: 133 LGHPLVTTSANISGDETY-QDPSLIHDDWGKHLDMVVDGGR-LYGDPSTVISLRNDQ-IE 189

Query: 191 ILRPGGLEIETLKRA 205
           +LR G    + + + 
Sbjct: 190 VLRQGCGPTDWIHQL 204


>gi|57234410|ref|YP_181562.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes
           195]
 gi|57224858|gb|AAW39915.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides ethenogenes
           195]
          Length = 213

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +A   L  G  +  PT+TVY +   + N  A+RR+++IK R     L   + DIS
Sbjct: 11  ESQIDQAVSILKRGGVVVFPTDTVYAVGALASNTQAVRRVFDIKGRANTKGLPALIGDIS 70

Query: 69  MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            + + A V  PL+  LAK +WPG LTLVL    T +I    T   +T   R+P      +
Sbjct: 71  QINQVAKVFPPLASKLAKEYWPGGLTLVLP--KTDNIPLELTGGNETVAIRIPNQPAVIE 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +++  G P+   SAN SG  S  N        +   +  I+DGG    G+ESTI+ V  +
Sbjct: 129 MLKRVGEPVTGTSANLSGCKSSLNAAEA-EKQLGDRVDFILDGGQVSGGVESTIIAVNPD 187

Query: 187 KKVRILRPGGLEIETLKR 204
             ++I+R G ++   +  
Sbjct: 188 G-LKIIRQGAIKESDILE 204


>gi|225022788|ref|ZP_03711980.1| hypothetical protein CORMATOL_02833 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944395|gb|EEG25604.1| hypothetical protein CORMATOL_02833 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 227

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   QIMSITDSN-----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           +I S TD+       ++ A   + +G  + +PT+T+YGL  D+ +  A+ RL   K R  
Sbjct: 3   RIYSCTDTGEVRSLGIKAAVGAVKSGRLVVLPTDTLYGLGCDAFDNDAVARLLAAKDRGP 62

Query: 57  MNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P+   V      +         L  L + FWPG L++V+    +   +   T    T 
Sbjct: 63  DMPVPVLVGSWDTARGLVHSYNDQLRTLIEAFWPGGLSIVVPQAPSLMWNLGDT--RGTV 120

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       +     P+A+ SAN SGQ   T    +    +  ++ + +DGG + +G
Sbjct: 121 MLRMPLHPVAIELLRETGPMAVSSANISGQPPATTAA-MAEEQLGDKVNVYLDGGETSVG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221
           + S+I++V  ++  R+LR G +    +   + V  E       TP+
Sbjct: 180 VASSIIDVSGDQP-RLLREGAIPATRIADVLGVAPETLTPAARTPE 224


>gi|305681802|ref|ZP_07404606.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658275|gb|EFM47778.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium matruchotii
           ATCC 14266]
          Length = 227

 Score =  194 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 2   QIMSITDSN-----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           +I S TD+       ++ A   + +G  + +PT+T+YGL  D+ +  A+ RL   K R  
Sbjct: 3   RIYSCTDTGEIRSLGIKAAVGAVKSGRLVVLPTDTLYGLGCDAFDNDAVARLLAAKDRGP 62

Query: 57  MNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P+   V      +         L  L + FWPG L++V+    +   +   T    T 
Sbjct: 63  DMPVPVLVGSWDTARGLVHSYNDQLRTLIEAFWPGGLSIVVPQAPSLMWNLGDT--RGTV 120

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       +     P+A+ SAN SGQ   T    +    +  ++ + +DGG + +G
Sbjct: 121 MLRMPLHPVAIELLRETGPMAVSSANISGQPPATTAA-MAEEQLGDKVNVYLDGGETSVG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221
           + S+I++V  ++  R+LR G +    +   + V  E       TP+
Sbjct: 180 VASSIIDVSGDQP-RLLREGAIPATRIADVLGVAPETLTPAARTPE 224


>gi|218516174|ref|ZP_03513014.1| probable translation factor protein [Rhizobium etli 8C-3]
          Length = 185

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 1/170 (0%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +      AL  A   L  G  IA+PTETVYGLA D+ NP AI R+YE K RP  NPLICH
Sbjct: 17  IEADRQAALEAASTALADGFAIAMPTETVYGLAADATNPAAITRIYETKGRPRFNPLICH 76

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           ++D++M + HA+ DPLS  LA+ FWPGPLTLVL L   + IH L+TA L +   RVP GF
Sbjct: 77  MADLAMAEHHAAFDPLSRALAEAFWPGPLTLVLPLKPESPIHSLATAGLDSVGVRVPKGF 136

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              LI  +G PLA PSAN SG IS T+  H+  + +  +IPLI+D G S 
Sbjct: 137 AGALIGAFGRPLAAPSANTSGAISATSAAHV-EADLGAKIPLILDAGPSA 185


>gi|108800849|ref|YP_641046.1| translation factor SUA5 [Mycobacterium sp. MCS]
 gi|119869989|ref|YP_939941.1| translation factor SUA5 [Mycobacterium sp. KMS]
 gi|126436447|ref|YP_001072138.1| translation factor SUA5 [Mycobacterium sp. JLS]
 gi|108771268|gb|ABG09990.1| translation factor SUA5 [Mycobacterium sp. MCS]
 gi|119696078|gb|ABL93151.1| translation factor SUA5 [Mycobacterium sp. KMS]
 gi|126236247|gb|ABN99647.1| translation factor SUA5 [Mycobacterium sp. JLS]
          Length = 218

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 9/218 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q+   TD +     +  A   L  G  + +PT+TVYG+  D+ N  A+  L   K R   
Sbjct: 3   QLFDCTDPDNRATGIAAAVSALKDGGLVVLPTDTVYGIGADAFNNEAVAALLAAKGRGRD 62

Query: 58  NPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V     ++     V   +  L + FWPG L+LV+    +  +         T  
Sbjct: 63  MPVPVLVGSWHTIEGLVYTVPHTARELIRAFWPGALSLVVRQAPS--LPWDLGDAHGTVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SG+ +  +        +   + + +D G S+   
Sbjct: 121 LRMPLHPVAIELLREVGPMAVSSANISGRPAAVSAADA-REQLGDLVDVYLDAGPSEQQA 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
            STIV++      RILR G +  E +   + V  E  +
Sbjct: 180 ASTIVDLSGAHP-RILRTGPVTAEAVAEVLGVNTESLL 216


>gi|227548002|ref|ZP_03978051.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079908|gb|EEI17871.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 219

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 5/204 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ ++ A + + AG  + +PT+TVYG+  D+ N  A+ +L   K+R    P+   V   S
Sbjct: 15  TDGIKAAVDAIRAGQCVVMPTDTVYGIGCDAFNNDAVAKLLATKRRGPDMPVPVLVGSWS 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            V+         +  L + FWPG L++V+    +   +   T    T   R+P       
Sbjct: 75  TVQGLVREFTDTAQTLVEAFWPGGLSIVVPEAPSLPWNLGDT--RGTVLLRMPNQPLAIE 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+ + SAN +G                  +P+ +DGG S +G  STI+++    
Sbjct: 133 LLREVGPMGVSSANLTGNEPPVTTSAA-RQQFGNAVPVYLDGGRSTVGEPSTIIDISGPS 191

Query: 188 KVRILRPGGLEIETLKRAISVELE 211
            V ILR G +  E +   ++++ E
Sbjct: 192 PV-ILRNGAISAERICEVLNLDPE 214


>gi|145295341|ref|YP_001138162.1| hypothetical protein cgR_1281 [Corynebacterium glutamicum R]
 gi|140845261|dbj|BAF54260.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 216

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 9/215 (4%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I    D ++    L+ A + + AG  + +PT+T+YGL  D+ N  A+  L   K R   
Sbjct: 3   RIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPD 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V     ++    S    +  L + FWPG L++++    +   +   T    T  
Sbjct: 63  MPVPVLVGSWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDT--RGTVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SG    + V       + + + + +DGG   IG 
Sbjct: 121 LRMPLHPVAIELLRQTGPMAVSSANISGHTPPSTVLEA-RQQLNQNVSVYLDGGECAIGK 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
            STIV++      +ILR G +  E +   + V  E
Sbjct: 180 PSTIVDISGPAP-KILREGAISAERVGEVLGVSAE 213


>gi|25027862|ref|NP_737916.1| hypothetical protein CE1306 [Corynebacterium efficiens YS-314]
 gi|259506253|ref|ZP_05749155.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium efficiens
           YS-314]
 gi|23493145|dbj|BAC18116.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166157|gb|EEW50711.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium efficiens
           YS-314]
          Length = 216

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 9/215 (4%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           ++    D  +    L+ A + + AG  + +PT+T+YGL  D+ N  A+  L   K R   
Sbjct: 3   RVYDCADPESRVAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNQAVANLLATKHRGPD 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V     ++         +  L + FWPG L++++    +   +   T    T  
Sbjct: 63  MPVPVLVGSWDTIQGLVQHYSEQARTLVQAFWPGGLSIIVPQAPSLPWNLGDT--RGTVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SG    + V       + + + + +DGG   IG 
Sbjct: 121 LRMPLHPVAIELLRETGPMAVSSANISGHTPPSTVTEA-RQQLNQNVSVYLDGGECAIGK 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
            S+I+++      ++LR G +  E +   + V  E
Sbjct: 180 PSSIIDISGPHP-KLLREGAISAERIGEVLGVTAE 213


>gi|221632454|ref|YP_002521675.1| Sua5/YciO/YrdC/YwlC family protein [Thermomicrobium roseum DSM
           5159]
 gi|221156754|gb|ACM05881.1| Sua5/YciO/YrdC/YwlC family protein [Thermomicrobium roseum DSM
           5159]
          Length = 209

 Score =  192 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 6/208 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+++   +  ++  A + L  G  +  PT+TVYG+      P A+ RLY  K RP   P+
Sbjct: 1   MKVLRADEPGSVEIAAQVLREGGLVVFPTDTVYGVGAVVDRPDAVARLYVAKGRPLDKPI 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
              ++D+  ++K A  V P    LA+ FWPG LT+V+       +             R+
Sbjct: 61  PVLIADLDQLEKLAREVTPEVQLLAQHFWPGALTIVVPAQPW--LPREIVRETGAVGLRM 118

Query: 120 PCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       +I   G  +A  SANRSG+     V+  + + +   + L IDGG +  G+ S
Sbjct: 119 PDHPVALGIISGAGGAVATTSANRSGEREACTVEEAIGA-LGDAVDLYIDGGRTPGGIPS 177

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206
           T+V  +   ++ +LR G L +E ++  +
Sbjct: 178 TVVAFEGS-RLVVLRRGALPVEVIEEVL 204


>gi|77919164|ref|YP_356979.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter carbinolicus DSM
           2380]
 gi|77545247|gb|ABA88809.1| translation factor SUA5 [Pelobacter carbinolicus DSM 2380]
          Length = 204

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 10/208 (4%)

Query: 3   IMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           I++I         + +  E +  G  +A PT+T+YGL  D  N   I+R+Y+IK+R    
Sbjct: 2   ILTINPETPQKRLISRVVECIKQGGIVAYPTDTIYGLGCDIFNRKGIKRIYQIKERVHRK 61

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P     +D+S V  +A V   +  + K + PGP T VL+  +T  +  L     KT   R
Sbjct: 62  PFSFICADLSDVANYAQVSNFAFKIMKRYLPGPYTFVLE--ATRVVPDLLVTKQKTVGIR 119

Query: 119 VPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P       ++   GHPL   SAN SG+        ++   + K+I +++DGGI K G  
Sbjct: 120 IPSNPISLAIVRELGHPLVTTSANLSGEE-PCCDPSLIEEELGKQINMVVDGGIIK-GEA 177

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205
           ST++++  +  + +LR G  +I  + + 
Sbjct: 178 STVISLIDDN-IEVLRQGAGDISWIHQL 204


>gi|38233637|ref|NP_939404.1| hypothetical protein DIP1043 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199897|emb|CAE49563.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 216

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 5/206 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    L++A   +  G  + IPT+T+YG+  D+ + TA+ +L E K R    P+   V  
Sbjct: 12  TREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRGPDMPVPVLVGS 71

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
               +    S       L + FWPG L++V++   +   +   T    T   R+P     
Sbjct: 72  WDTARGLVHSYSDQLRTLIEAFWPGGLSIVVEQAPSLQWNLGDT--RGTVMLRMPLHPVA 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             +     P+A+ SAN SGQ   T  +      +   + + +D G + +G  STI+++  
Sbjct: 130 IELLRETGPMAVSSANISGQTPATTAQEAQR-QLGDNVSVYLDAGETPVGTASTIIDLSG 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELE 211
           +   RILR G +  E +   + V++E
Sbjct: 189 DHP-RILREGAISAERVAEVLEVDVE 213


>gi|256833002|ref|YP_003161729.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM
           20603]
 gi|256686533|gb|ACV09426.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM
           20603]
          Length = 246

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 10/219 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           NAL +A   L  G  + +PT+TVYG+  D+ NP+A+  L   K R    P    V+  + 
Sbjct: 16  NALDEAINQLHRGAVVVLPTDTVYGIGADAFNPSAVNALLRAKGRGRHMPPPVLVASPAT 75

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +   A  V   +  LA+ FWPG LTL+     +  +         T   RVP   T   +
Sbjct: 76  IDALATHVPEGARALAERFWPGGLTLICHAQPS--LAWDLGETQGTVALRVPDHPTALAL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                PLA+ SANR+G  +    +      +   + + +D G    G+ STIV+   E  
Sbjct: 134 LQRTGPLAVSSANRTGGEAALTAQQA-RDQLGDSVAVYLDAGEVPGGVASTIVDATTEN- 191

Query: 189 VRILRPGGLEIETLKRA-----ISVELEYCVDETSTPQS 222
           +R++R G + +E L+       +  EL    D ++T Q+
Sbjct: 192 LRLIRAGAVSLEELRAVTFVLDVGEELPDSPDVSATDQA 230


>gi|270308141|ref|YP_003330199.1| translation factor SUA5 [Dehalococcoides sp. VS]
 gi|270154033|gb|ACZ61871.1| translation factor SUA5 [Dehalococcoides sp. VS]
          Length = 213

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 6/201 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N +  A   L  G  +  PT+TVY +   +RN  A+ R+++IK R     L   + D+S
Sbjct: 11  ENQITNAVRILKEGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDVS 70

Query: 69  MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            + + A V   L+  LA  +WPG LTLVL    T +I    T   +T   R+P      +
Sbjct: 71  QINQVAKVFPELARKLAAEYWPGGLTLVLP--KTNNIPLELTGGNETVAIRIPNQPAVIE 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +++  G P+   SAN SG  S  N      S +   +  I+DGG    G+ESTIV V   
Sbjct: 129 MLKRIGEPITGTSANLSGCKSSLNAAEA-RSQLGDRVDFILDGGQVSGGVESTIVAV-NN 186

Query: 187 KKVRILRPGGLEIETLKRAIS 207
            +++I+R G ++   + +   
Sbjct: 187 NELKIIRQGAIKEADILKTAG 207


>gi|111225292|ref|YP_716086.1| putative translation factor [Frankia alni ACN14a]
 gi|111152824|emb|CAJ64568.1| Putative translation factor [Frankia alni ACN14a]
          Length = 216

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 87/218 (39%), Gaps = 9/218 (4%)

Query: 1   MQIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ    +D       L  A   +  G  + +PT+T+YGL  D+ +  A+  L   K R  
Sbjct: 1   MQRFDCSDEAERARGLDAAVAAVGRGGLVVLPTDTLYGLGADAFDRDAVAALLAAKGRGR 60

Query: 57  MNPLICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P+   V     +        P    L   FWPG LTLV+   ++  +         T 
Sbjct: 61  NMPVPVLVGSWRTLDGLIDRKTPQVKDLISAFWPGGLTLVVRHAAS--LRWDLGEGRGTV 118

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       +     P+A+ SAN SGQ   T     +   +     + +DGG     
Sbjct: 119 AVRMPLHPVAIELLGRTGPMAVSSANISGQPPATTADEAV-DQLGGAAEVYLDGGPCPAA 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC 213
           + STIV+   E  V ++R G + ++ L+  + +  E  
Sbjct: 178 VPSTIVDCTGEVPV-VVRSGAVGLDALREVLPLVREPA 214


>gi|296268875|ref|YP_003651507.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM
           43833]
 gi|296091662|gb|ADG87614.1| Sua5/YciO/YrdC/YwlC family protein [Thermobispora bispora DSM
           43833]
          Length = 215

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 5/200 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L  A   +  G  + IPT+TVYG+  D+ N  A+  L E K R    P    V  +S
Sbjct: 14  AAGLTDAASAVRRGELVVIPTDTVYGIGCDAFNTRAVAALLEAKGRGRDMPAPVLVGTVS 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
                  S+      L   FWPGPLTL+    +   +         T   R+P       
Sbjct: 74  AATALVQSLGTHGQDLIDAFWPGPLTLIF--RANPSLAWDLGDTKGTVAVRMPMHQVALD 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SANRSGQ   T V+      +   + + +DGG     + STIV++    
Sbjct: 132 LLRETGPMAVSSANRSGQPPATTVEEA-QEQLGDAVSVYLDGGPCTDNVPSTIVDLTTAV 190

Query: 188 KVRILRPGGLEIETLKRAIS 207
             R+LR G + ++ ++  + 
Sbjct: 191 P-RLLRKGAIPVDKIRGVVG 209


>gi|312139169|ref|YP_004006505.1| hypothetical protein REQ_17520 [Rhodococcus equi 103S]
 gi|325673526|ref|ZP_08153217.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus equi ATCC 33707]
 gi|311888508|emb|CBH47820.1| conserved hypothetical protein [Rhodococcus equi 103S]
 gi|325555547|gb|EGD25218.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus equi ATCC 33707]
          Length = 219

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 5/210 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L  A   L AG  + +PT+TVYGL  D+ +  A+  L   K R    P+   V   +
Sbjct: 14  EAGLTAAKNSLKAGRLVVLPTDTVYGLGADAFDGDAVASLLRAKGRGRDMPVPVLVGSWN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +     SV P +  L K FWPG L++V+    +  +      +  T   R+P       
Sbjct: 74  TIDGLVYSVRPQARELIKAFWPGGLSIVVQQAPS--LAWDLGDSRGTVMLRMPLHPVALE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG+   T V       +     + +DGG +   + STIV++  ++
Sbjct: 132 LLRDVGPMAVSSANISGRPPATTVDEA-RDQLGGAASVYLDGGPATHAVASTIVDLTGDE 190

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDET 217
            +RILR G +    +   + V  E  +   
Sbjct: 191 -IRILREGAVPTADVAEVLGVTPESLLGGA 219


>gi|19552426|ref|NP_600428.1| putative translation factor (SUA5) [Corynebacterium glutamicum ATCC
           13032]
 gi|62390090|ref|YP_225492.1| translation factor (SUA5) [Corynebacterium glutamicum ATCC 13032]
 gi|21323969|dbj|BAB98595.1| Putative translation factor (SUA5) [Corynebacterium glutamicum ATCC
           13032]
 gi|41325426|emb|CAF19906.1| Putative translation factor (SUA5) [Corynebacterium glutamicum ATCC
           13032]
          Length = 216

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 9/215 (4%)

Query: 2   QIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I    D ++    L+ A + + AG  + +PT+T+YGL  D+ N  A+  L   K R   
Sbjct: 3   RIYDCADQDSRAAGLKAAVDAVKAGQLVVLPTDTLYGLGCDAFNNEAVANLLATKHRGPD 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V     ++    S    +  L + FWPG L++++    +   +   T    T  
Sbjct: 63  MPVPVLVGSWDTIQGLVHSYSAQAKALVEAFWPGGLSIIVPQAPSLPWNLGDT--RGTVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SG    T V       + + + + +DGG   +  
Sbjct: 121 LRMPLHPVAIELLRQTGPMAVSSANISGHTPPTTVLEA-RQQLNQNVAVYLDGGECALAT 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
            STIV++      +ILR G +  E +   + V  E
Sbjct: 180 PSTIVDISGPAP-KILREGAISAERVGEVLGVSAE 213


>gi|306835873|ref|ZP_07468868.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC
           49726]
 gi|304568238|gb|EFM43808.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC
           49726]
          Length = 222

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 5/208 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
                  +  A +   +G  + +PT+T+YGL  D+ +  A+  L   K+R    P+   V
Sbjct: 11  DTEREEGVSIATKAAKSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLV 70

Query: 65  SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
              + V+   AS    +  L + FWPG L++V+    +   +   T    T   R+P   
Sbjct: 71  GSWNTVRGLVASYPDSTRDLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHP 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               +     P+A+ SAN SG    T  + +    + K + + +DGG + IG  STI+++
Sbjct: 129 IAIELLREVGPMAVSSANISGHQPPTTAQ-MAKDQLGKAVTVYLDGGETDIGKPSTIIDL 187

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELE 211
             +    +LR G L  E +   + V  +
Sbjct: 188 SGDHPY-LLREGALSAEEIGEVLGVSAD 214


>gi|117925136|ref|YP_865753.1| translation factor SUA5 [Magnetococcus sp. MC-1]
 gi|117608892|gb|ABK44347.1| translation factor SUA5 [Magnetococcus sp. MC-1]
          Length = 206

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 9/206 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     LR+A + L  G  I  PT+T YGL     N   + R+  IK+    
Sbjct: 3   QYFKIHPENPQARLLRQAAQILQEGGVIVYPTDTTYGLGCVMSNRKGVERVVRIKQLSDT 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           + L    +D+S +  +A VD     L K F PGP T VL+  ++ ++        KT   
Sbjct: 63  HQLTLLCADLSDIANYARVDNSCYRLLKRFLPGPYTFVLE--ASREVPKKILPRRKTIGL 120

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+E  G PL   S    G   I     ++   +  ++ LIIDGGI     
Sbjct: 121 RVPNHQICHALLELVGEPLLSTSVRLPGHEEIFTDPSLIRDQLEHQVDLIIDGGILPEH- 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            STI+++   +   +LR G  +   +
Sbjct: 180 PSTIIDMTSGEP-ELLREGAGDSAAI 204


>gi|169628535|ref|YP_001702184.1| hypothetical protein MAB_1444 [Mycobacterium abscessus ATCC 19977]
 gi|169240502|emb|CAM61530.1| Conserved hypothetical protein (Sua5/YciO/YRDC/ YwlC family
           protein?) [Mycobacterium abscessus]
          Length = 226

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 5/207 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + T  + +  A   L AG  + +PT+TVYGL  D+ +  A+  L   K R    P+   V
Sbjct: 10  AATRQSGIDAAVSALKAGELVVMPTDTVYGLGCDAFDSGAVTALLAAKGRGRDMPVGVLV 69

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
                +     +V   +  L + FWPGPL++++    +  +         +   R+P   
Sbjct: 70  GSWHTIDGLVFAVPAAARELIEAFWPGPLSIIVRHAPS--LSWDLGDAQGSVMLRMPMHP 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               +     P+A+ SAN SG+ +           +  ++ + +DGG +++G  STIV++
Sbjct: 128 VAIELLRAVGPMAVSSANVSGRPAALTAAEA-RGQLDDKVAVYLDGGQAELGAASTIVDL 186

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL 210
                V I+R G +  E +   I  ++
Sbjct: 187 TGPAPV-IVREGPISREQIVEVIGGQV 212


>gi|311898378|dbj|BAJ30786.1| hypothetical protein KSE_50080 [Kitasatospora setae KM-6054]
          Length = 215

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 5/199 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ LR+A   +  G  + +PT+TVYGLA D+ +  A+  L   K R    P    V   +
Sbjct: 14  ASGLREAASAIRRGELVVVPTDTVYGLAADAFSAEAVAGLLAAKGRGRNMPSPVLVGSPT 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +          +  L   FWPG LTLV     +  +         T   R+P       
Sbjct: 74  TLHGLVTDFSEQAWELVDAFWPGGLTLVARHQPS--LRWDLGETRGTVAVRMPLHPVVLE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ S N++G  S +       + +   + + +DGG +  G  STIV+V  + 
Sbjct: 132 LLNATGPLAVSSGNKTGGPSPSTCDEA-EAQLGDAVSIYLDGGTADYGTPSTIVDVTGKV 190

Query: 188 KVRILRPGGLEIETLKRAI 206
            V +LR G + +E L+  +
Sbjct: 191 PV-VLRAGAISVEQLREVV 208


>gi|300933614|ref|ZP_07148870.1| hypothetical protein CresD4_06047 [Corynebacterium resistens DSM
           45100]
          Length = 219

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 9/220 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q +  TD N    A+  A   +D G  + +PT+TVYG+  D+ +  A+  L   K R   
Sbjct: 3   QRVDATDPNDRERAIEIAASAVDGGRLVVLPTDTVYGIGCDAFDNQAVEALLRAKGRGPD 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V     ++        ++ L  + FWPG L++V+    +   +   T    T  
Sbjct: 63  MPVPVLVGSWDTIQGLVRDYTYNMRLLVEAFWPGGLSMVVHQAPSLPWNLGDT--RGTVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SGQ   TNV+ +    +  ++ + I+GG +  G+
Sbjct: 121 LRMPEHPIAIELLNQTGPMAVSSANISGQPPATNVQ-MAEDQLGADVAVYINGGNATHGV 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
            STIV++   +  RILR G +  E + R + +       E
Sbjct: 180 ASTIVDLSSGRP-RILREGAITAEQIGRVLGMSPAELRGE 218


>gi|227832891|ref|YP_002834598.1| hypothetical protein cauri_1065 [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182620|ref|ZP_06042041.1| hypothetical protein CaurA7_01395 [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453907|gb|ACP32660.1| hypothetical protein cauri_1065 [Corynebacterium aurimucosum ATCC
           700975]
          Length = 225

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 9/215 (4%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI +  D       +  A +   +G  + +PT+T+YGL  D+ +  A+  L   K R   
Sbjct: 4   QIYNCADAAEREEGMALAVKAAKSGRLVVMPTDTLYGLGCDAFDNDAVASLLATKHRGPD 63

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V     VK   AS+D  +  L + FWPG L++V+    +   +   T    T  
Sbjct: 64  MPVPVLVGSWDTVKGLVASLDDTAQTLIEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVM 121

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SGQ   T         + K + + +DGG +++G 
Sbjct: 122 LRMPLHPIAIELLREVGPMAVSSANISGQTPPTTAIAA-KQQLGKAVTVYLDGGEAEVGK 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
            STI+++       +LR G L  E +   I V  E
Sbjct: 181 PSTIIDLSGPHPY-LLREGALSAEQIGEVIGVSAE 214


>gi|227501696|ref|ZP_03931745.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC
           49725]
 gi|227077721|gb|EEI15684.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium accolens ATCC
           49725]
          Length = 222

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 5/208 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
                  +  A +   +G  + +PT+T+YGL  D+ +  A+  L   K+R    P+   V
Sbjct: 11  DAEREEGVSIATKAAKSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLV 70

Query: 65  SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
              + V+   AS    +  L + FWPG L++V+    +   +   T    T   R+P   
Sbjct: 71  GSWNTVRGLVASYPDSTRDLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHP 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               +     P+A+ SAN SG    T  + +    + K + + +DGG + IG  STI+++
Sbjct: 129 IAIELLREVGPMAVSSANISGHQPPTTAQ-MAKDQLGKAVTVYLDGGETDIGKPSTIIDL 187

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELE 211
             +    +LR G L  E +   + V  +
Sbjct: 188 SGDHPY-LLREGALSAEEIGEVLGVSAD 214


>gi|254251532|ref|ZP_04944850.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158]
 gi|124894141|gb|EAY68021.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158]
          Length = 281

 Score =  189 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/280 (24%), Positives = 115/280 (41%), Gaps = 24/280 (8%)

Query: 60  LICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           +I H+         A+  P  +  L   FWPGPLTL+L       I    +    +   R
Sbjct: 1   MIVHLPPGGDPAYWAADLPADARKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLR 58

Query: 119 VPCG-FTKKLIETY------GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            P     + L+  +         +A PSANR G +S T  +H+       +   ++DGG 
Sbjct: 59  CPSHAVAQALLAAFSARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGP 116

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD-ETSTPQSPGMLKSHY 230
           S++G+ESTIV++       +LRPG +  + +   +          + + P++ G LK+HY
Sbjct: 117 SEVGIESTIVDLSRGFPA-LLRPGHVSPQQIADVLGRAPRLPDGSDATAPRASGTLKAHY 175

Query: 231 APRSQV----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF 280
           APR+ +           L A   +     +            A     ++        A 
Sbjct: 176 APRTPLALLPFDALEPLLAAAQADGERVALVARASRAGRWAQADGVHFVAAPEDPHAYAR 235

Query: 281 NLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +L+  ++  D +  + I    +P     IA+N+RL RAAA
Sbjct: 236 DLYGMLRALDRAQVARILVEKLPETIDWIAVNDRLGRAAA 275


>gi|255324518|ref|ZP_05365635.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255298424|gb|EET77724.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 222

 Score =  189 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 5/206 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
                  +  A +   +G  + +PT+T+YGL  D+ +  A+  L   K+R    P+   V
Sbjct: 11  DAEREEGMNIAVKAAQSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLV 70

Query: 65  SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
                V+   AS    +  L + FWPG L++V+    +   +   T    T   R+P   
Sbjct: 71  GSWDTVRGLVASYTDTARDLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHP 128

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               +     P+A+ SAN SG    T    +    + K + + +DGG + +G  STI+++
Sbjct: 129 IAIELLREVGPMAVSSANISGHQPPTTAL-MAKQQLGKAVTVYLDGGETAVGKPSTIIDL 187

Query: 184 QCEKKVRILRPGGLEIETLKRAISVE 209
             E+   +LR G L  E +   I V+
Sbjct: 188 SGERPY-LLREGALSAEEIGEVIGVD 212


>gi|297569512|ref|YP_003690856.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925427|gb|ADH86237.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 205

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++  E L  G  I  PT+TVYG+  D  N  A++R+Y++K+RP   P     +D+ 
Sbjct: 12  PRLIKQVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKQRPLARPFSFICADLK 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V  +A V      + +   PGP T VL   +T  +  +     KT   R+P      +L
Sbjct: 72  DVSTYAHVSNTGYRVLRKSLPGPYTFVLP--ATKLVPKIMMTKQKTVGIRMPDHRICMEL 129

Query: 128 IETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +   G+P+   SA             + +     K++ LIID G       ST+V+++ +
Sbjct: 130 VTGLGNPILTTSAAPDDPDARQLIHAYEVEERYGKQVDLIIDSGPLAHSSPSTVVSLEDD 189

Query: 187 KKVRILRPGGLEIETL 202
             +++LRPG   +E L
Sbjct: 190 D-LQVLRPGKGSLEGL 204


>gi|94266543|ref|ZP_01290229.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
 gi|93452818|gb|EAT03344.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
          Length = 204

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 5/204 (2%)

Query: 1   MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M+I         +++  E L  G  I  PT+TVYG+  D  N  A++R+Y++K RP   P
Sbjct: 1   MEINPDNPQPRLIKRVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKCRPLGQP 60

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                +D+  +  +A V      + +   PGP T VL   +T  +  +  +  KT   RV
Sbjct: 61  FSFICADLKEISNYAHVSNTGYRVMRKSLPGPYTFVLP--ATKLVPKIMMSKQKTVGIRV 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      +L+   G+P+   SA      S   +   +       +   ID G   +   S
Sbjct: 119 PDNRICLELVAGLGNPILTTSAAPDDPDSRQLLAFEVDERYGHLVDYTIDSGPLTVAQPS 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202
           T+V++  + ++ +LRPG   +E L
Sbjct: 179 TVVSM-VDDELTVLRPGKGRLEDL 201


>gi|91202678|emb|CAJ72317.1| similar to YrdC protein [Candidatus Kuenenia stuttgartiensis]
          Length = 210

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 19/212 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI+ + + +    ++  A + L  G  +A PTETVYGL V   NP AI RLYE KKRPA 
Sbjct: 10  QILDVRNQDLYWTSIEIAAKALRNGGIVAFPTETVYGLGVHKDNPEAIERLYEAKKRPAE 69

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             L   ++DI  V+ +A +V  ++  L + FWPGPL ++  L   +D            C
Sbjct: 70  KRLTLMIADIGEVELYAGAVSDVAKRLMESFWPGPLAIIFPLKDGSD-----------IC 118

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + LI T   P+A  SAN SG    T+   + ++    EI  I+DGG +   
Sbjct: 119 VRLPDNAIARDLIRTANIPVATTSANTSGHPPSTDASQV-TAYFKDEIDFILDGGPTPSH 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
             ST+V ++ +    ++R G +   T++  + 
Sbjct: 178 EPSTVVKIK-DGVCEVVRHGIIPETTIRNCLK 208


>gi|253581898|ref|ZP_04859122.1| SUA5 protein [Fusobacterium varium ATCC 27725]
 gi|251836247|gb|EES64784.1| SUA5 protein [Fusobacterium varium ATCC 27725]
          Length = 216

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 11/213 (5%)

Query: 1   MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M  +  T  NA   K  + L  G  I  PT+TVYG+     +  +I ++Y+ K+R   +P
Sbjct: 1   MDRIKYTSLNADYNKIGKLLKEGNLIIYPTDTVYGVGGIIESDESIAKIYKAKERSFKSP 60

Query: 60  LICHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           LI  VSD+S ++K A ++  +      L K FWPG LT++L+     ++  +  +  KT 
Sbjct: 61  LIVLVSDVSKIEKIAYIEEKNREKIEKLIKEFWPGGLTIILN--KKDNVPDIMVSGGKTV 118

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      K+IE  G  L   SAN SG+ +  +    LS    + + +++DGG   I
Sbjct: 119 GVRMPNLDTALKIIEAAGGLLPTTSANISGETTPRSYDE-LSEEFKERVEILVDGGRCPI 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           G  STI+++    K +ILR G + IE +++ I 
Sbjct: 178 GNASTIIDMS--DKPKILRTGAISIEDIEKIIG 208


>gi|311740612|ref|ZP_07714439.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304132|gb|EFQ80208.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 223

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 5/206 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
                  +  A +   +G  + +PT+T+YGL  D+ +  A+  L   K+R    P+   V
Sbjct: 12  DAEREEGMNIAVKAAQSGRLVVMPTDTLYGLGCDAFDNDAVANLLATKQRGPDMPVPVLV 71

Query: 65  SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
                V+   AS    +  L + FWPG L++V+    +   +   T    T   R+P   
Sbjct: 72  GSWDTVRGLVASYTDTARDLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHP 129

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               +     P+A+ SAN SG    T    +    + K + + +DGG + +G  STI+++
Sbjct: 130 IAIELLREVGPMAVSSANISGHQPPTTAL-MAKQQLGKAVTVYLDGGETAVGKPSTIIDL 188

Query: 184 QCEKKVRILRPGGLEIETLKRAISVE 209
             E    +LR G L  E +   I V+
Sbjct: 189 SGECPY-LLREGALSAEEIGEVIGVD 213


>gi|94266276|ref|ZP_01289981.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
 gi|93453127|gb|EAT03598.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
          Length = 206

 Score =  188 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++  E L  G  I  PT+TVYG+  D  N  A++R+Y++K RP   P     +D+ 
Sbjct: 12  PRLIKRVVEALRQGAVICYPTDTVYGIGCDIFNQKAVKRIYQLKCRPLGQPFSFICADLK 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V      + +   PGP T VL   +T  +  +  +  KT   RVP      +L
Sbjct: 72  EISNYAHVSNTGYRVMRKSLPGPYTFVLP--ATKLVPKIMMSKQKTVGIRVPDNRICLEL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G+P+   SA      S   +   +       +   ID G   +   ST+V++  + 
Sbjct: 130 VAGLGNPILTTSAAPDDPDSRQLLAFEVDERYGHLVDYTIDSGPLTVAQPSTVVSM-VDD 188

Query: 188 KVRILRPGGLEIETL 202
           ++ +LRPG   +E L
Sbjct: 189 ELTVLRPGKGRLEDL 203


>gi|111018482|ref|YP_701454.1| hypothetical protein RHA1_ro01481 [Rhodococcus jostii RHA1]
 gi|110818012|gb|ABG93296.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 218

 Score =  188 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 5/209 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +  + S  +  A   L AG  + +PT+T+YG+  D+ +  A+  L   K R    P+   
Sbjct: 9   LPDSRSAGMSAAKNALKAGRLVVLPTDTLYGIGADAFDSEAVAALLRAKGRGRDMPVPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V   + +     SV P +  L + FWPG L+LV++   +  +         T   R+P  
Sbjct: 69  VGSWNTIDGLVYSVRPQTRDLIRAFWPGGLSLVVEQAPS--LAWDLGDTRGTVMLRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLA+ SAN SGQ   T V+      +     + +DGG ++ G  STIV+
Sbjct: 127 PVALELLREVGPLAVSSANVSGQPPATTVEEA-REQLGGSASVYLDGGRAEQGQASTIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211
           +      RILR G +    +   + V  E
Sbjct: 186 LTGATP-RILREGAVPTGDVADVLGVTAE 213


>gi|309775205|ref|ZP_07670216.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917024|gb|EFP62753.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 234

 Score =  188 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 7/207 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   +++  ++L  G  +A PT+TVYGL V   N  A++ L E K RP   P+
Sbjct: 30  METRRF-DKKDVKEVAQYLKEGKVVAFPTDTVYGLGVIYENEEALQALKESKGRPENKPI 88

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V+++  +++ A ++  +  LAK F PG  T++L    T  +    T    T   R+P
Sbjct: 89  PTMVANVEQMQQIAVMNEAACKLAKAFMPGAFTMILKKKET--LPAYVTNGFPTVGIRMP 146

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              F  +LI   G PL + SANRSG+ +    + +L   +   I  I+ G  +   L ST
Sbjct: 147 NDPFVLQLIAECGKPLLVTSANRSGEETGVRDEQVLK-QLDGRIDAIVLGE-ADGKLAST 204

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           IV++  ++ V ++R G +  E +++ +
Sbjct: 205 IVDMSTQEAV-LVREGPVTAEDIQKVL 230


>gi|167561724|ref|ZP_02354640.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           EO147]
          Length = 198

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 13/194 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   LDAG  +A PTETVYGL  D+++P A+ R+Y  K RPA +P+I H++  S
Sbjct: 10  AAQIDEAAALLDAGELVAFPTETVYGLGGDAQSPAAVARIYAAKGRPANHPVIVHLAPGS 69

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L   +   I    +    +   R P     + 
Sbjct: 70  DPGYWVDELPADAKKLIDAFWPGPLTLILKRAAH--IPDAVSGGQDSVGLRCPSHPVAQA 127

Query: 127 LIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           L+  +         +A PSANR G +S T  +H+        +  ++DGG S +G+ESTI
Sbjct: 128 LLRAFDARRGGHGGVAAPSANRFGHVSPTTAQHV-RDEFGDSV-HVLDGGASDVGIESTI 185

Query: 181 VNVQCEKKVRILRP 194
           +++       +LRP
Sbjct: 186 LDLSRGFPA-LLRP 198


>gi|227503860|ref|ZP_03933909.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC
           6940]
 gi|227199483|gb|EEI79531.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium striatum ATCC
           6940]
          Length = 222

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 5/204 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A +   +G  + +PT+T+YGL  D+ +  A+  L   K R    P+   V    
Sbjct: 15  EEGMALAVKAAKSGRLVVMPTDTLYGLGCDAFDNDAVASLLATKHRGPDMPVPVLVGSWD 74

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++   AS    +  L + FWPG L++V+    +   +   T    T   R+P       
Sbjct: 75  TIRGLVASYTDTARTLVEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVMLRMPLHPIAIE 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SGQ   T         + K + + +DGG + IG  STI+++  E+
Sbjct: 133 LLREVGPMAVSSANISGQTPPTTALEA-KQQLGKAVTVYLDGGETAIGKPSTIIDLSGER 191

Query: 188 KVRILRPGGLEIETLKRAISVELE 211
              +LR G L  E +   I V  E
Sbjct: 192 PY-LLREGALSAEEIAAVIGVTAE 214


>gi|85858566|ref|YP_460768.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB]
 gi|85721657|gb|ABC76600.1| sua5/yciO/yrdC/ywlC family protein [Syntrophus aciditrophicus SB]
          Length = 217

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 6/201 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   L+   E L  G  +A PTET YGL  D+ N  AI +++ IK R   NP+   + D 
Sbjct: 15  EPALLQHVAENLRKGRVVAYPTETFYGLGADAGNERAIEKIFSIKGRQFNNPIPLIIGDR 74

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             +    + +   +  L  +FWPGPLTLV    ++ ++ P  TAN      R+      +
Sbjct: 75  DELDSLVTAIPEAAQRLIHVFWPGPLTLVF--RASKNVSPRLTANTGLIGIRISSHPIAR 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L  + G PL   SAN SGQ   T    +   ++   I  I+DGG ++    ST+VN+  
Sbjct: 133 SLARSLGAPLTATSANFSGQKESTTAHEVAR-TLGSLIDGIVDGGQTRGNKGSTVVNIAV 191

Query: 186 EKKVRILRPGGLEIETLKRAI 206
           +  + ILR G +    +++A+
Sbjct: 192 DPPL-ILRVGVITEIEIRKAL 211


>gi|167585582|ref|ZP_02377970.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ubonensis Bu]
          Length = 214

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 13/194 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLS 80
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+            +   +
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWVEALPDDA 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY------GH 133
             L   FWPGPLTL+L       I    +    +   R P     + L++ +        
Sbjct: 84  RKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLDAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTI+++       +LR
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGPSEVGIESTILDLSRGFPA-LLR 198

Query: 194 PGGLEIETLKRAIS 207
           PG +    +   + 
Sbjct: 199 PGHVSPRQIADVLG 212


>gi|313899365|ref|ZP_07832876.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2]
 gi|312955818|gb|EFR37475.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium sp. HGF2]
          Length = 214

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 7/207 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   +++  E L  G  +A PT+TV+GL V   N  A+R+L E K RP   P+
Sbjct: 11  METRRF-DKKDVKEVAELLKNGQVVAFPTDTVFGLGVIYENEEALRKLKESKGRPENKPI 69

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V+D+  +K  A +   ++ LA  F PG  T++L    T  +    T    T   R+P
Sbjct: 70  PTMVADVEQMKCIAQMPAEAVALADAFMPGAFTMILKKQET--LPDYVTNGFPTVGIRMP 127

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              F  +LI+  G PL + SANRSG+ +    + +L   +   I  I+ G  +K  L ST
Sbjct: 128 DDPFVLRLIKECGKPLLVTSANRSGEETGVRDEQVL-EQLDGRIDAIVLGE-AKGKLAST 185

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           IV++  E+  RI+R G +  + +K+ +
Sbjct: 186 IVDMSEEEP-RIVREGPISADDIKKVL 211


>gi|86742399|ref|YP_482799.1| translation factor SUA5 [Frankia sp. CcI3]
 gi|86569261|gb|ABD13070.1| translation factor SUA5 [Frankia sp. CcI3]
          Length = 216

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 9/213 (4%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+    +D       L  A   +  G  + +PT+T+YGL  D+ +  A+  L   K R  
Sbjct: 1   MERFDCSDERERARGLDAAVSTVARGGLVVLPTDTLYGLGADAFDRDAVASLLAAKGRGR 60

Query: 57  MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P+   V     +      + P    L   FWPG LTLV     +  +      +  T 
Sbjct: 61  NMPVPVLVGSWRTLDGLIERMTPQVRELITAFWPGGLTLVARHTPS--LRWDLGESRGTV 118

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       +     P+A+ SAN SGQ   T +   L   +     + +DGG     
Sbjct: 119 AVRMPLHPVAIELLGRTGPMAVSSANISGQPPATTIDEAL-HQLGGAADVYLDGGPCPAA 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208
           + STIV+   E  V +LR G + +  L+  + +
Sbjct: 178 VPSTIVDCTGEVPV-VLRSGAIGLTALRAVLPL 209


>gi|257056937|ref|YP_003134769.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017]
 gi|256586809|gb|ACU97942.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017]
          Length = 216

 Score =  187 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L+ A   + +G  + +PT+TVYG+  D+ + TA+R L + K R    P+   V   S
Sbjct: 14  ADGLKAAISAVRSGRLVVLPTDTVYGIGADAFDATAVRALLQAKNRGPDMPVGVLVGSWS 73

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            V      +   +  L + FWPG L++V+    +  +H        T   R+P       
Sbjct: 74  TVDGLVLGLSQEARTLIEAFWPGDLSIVVSHAPS--LHWNLGTTRGTVMLRMPLHPVALE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SGQ   + ++      + + + + +DGG S   + STIV++  EK
Sbjct: 132 VLREVGPMAVSSANVSGQPPASTMQEA-KEQLGESVAVYLDGGPSGDPVPSTIVDLTGEK 190

Query: 188 KVRILRPGGLEIETLKRAISVELEYC 213
              +LR G +  E +  A+ +E+   
Sbjct: 191 P-SLLREGAVSAEAVSEALGMEIGRA 215


>gi|73748639|ref|YP_307878.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1]
 gi|289432664|ref|YP_003462537.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT]
 gi|73660355|emb|CAI82962.1| putative translation factor Sua5 [Dehalococcoides sp. CBDB1]
 gi|288946384|gb|ADC74081.1| Sua5/YciO/YrdC/YwlC family protein [Dehalococcoides sp. GT]
          Length = 213

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 6/199 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A + L  G  +  PT+TVY +   + N  A+ R+++IK R     L   + DIS +
Sbjct: 13  QINRAVQVLKNGGVVIFPTDTVYAVGALASNTHAVNRVFDIKGRTNTKGLPALIGDISQI 72

Query: 71  KKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
            + A +  PL+  LA  +WPG LTLVL    T +I    T   +T   R+P      +++
Sbjct: 73  HQVAKIFPPLARKLAAEYWPGGLTLVLP--KTDNIPLELTGGNETVAIRIPNQAAVIEML 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+   SAN SG  S  N        +   +  I+DGG    G+ESTIV V  ++ 
Sbjct: 131 KRVAEPVTGTSANLSGCKSSLNASEAKI-QLGDRVDFILDGGQVSGGVESTIVTVNNDE- 188

Query: 189 VRILRPGGLEIETLKRAIS 207
           ++I+R G ++   + +   
Sbjct: 189 LKIIRQGAIKESDIMKTAG 207


>gi|297202392|ref|ZP_06919789.1| yrdC domain-containing protein [Streptomyces sviceus ATCC 29083]
 gi|197710087|gb|EDY54121.1| yrdC domain-containing protein [Streptomyces sviceus ATCC 29083]
          Length = 215

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L E K R    P    
Sbjct: 9   DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVHDLLEAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +         L+  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSELAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  S           +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPETC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  E  + +LR G +  + L++ +
Sbjct: 186 VTREVPL-LLRAGAISADELRKVV 208


>gi|152965228|ref|YP_001361012.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359745|gb|ABS02748.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans
           SRS30216]
          Length = 241

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 8/222 (3%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +     L  A   +  G  + +PT+TVYG+  D+ NP A++RL E K R    P    V
Sbjct: 10  PVIRERGLSAAHNAVKRGEVVVLPTDTVYGIGADAFNPAAVKRLLEAKGRGRDMPPPVLV 69

Query: 65  SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            +   +   AS  P ++  L   FWPG LT+V     +       T    T   R+P   
Sbjct: 70  PETRTIDGLASSIPFAVRELIDAFWPGALTIVCRAQPSLTWDLGETNG--TVALRMPLHP 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               +     P+A+ SAN SG+ + T V   +   + + + + +DGG S  G  STIV+ 
Sbjct: 128 VALELLRRTGPMAVSSANLSGRPAATVVGEAV-EQLGESVRVYLDGGPSTKGAPSTIVDA 186

Query: 184 QCEKKVRILRPGGLEIETLKRAIS---VELEYCVDETSTPQS 222
             +  +R+LR G +    L+ A+    VELE    E  T ++
Sbjct: 187 -SDGPLRVLRVGAISEAELRAAVPAGWVELEEPAVEEPTAEA 227


>gi|237737623|ref|ZP_04568104.1| SUA5 protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419503|gb|EEO34550.1| SUA5 protein [Fusobacterium mortiferum ATCC 9817]
          Length = 212

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 112/211 (53%), Gaps = 11/211 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I ++ + + L +  + L AG  I  PT+TVYG+     +   I+ +Y+ K+R   +PLI
Sbjct: 6   KIYNLQNIDFL-EIEKSLKAGELIIYPTDTVYGIGGVISSEETIKNIYKAKERSFKSPLI 64

Query: 62  CHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             VSD+  +++ A V+  +      L   FWPG LT++L       I  + TA+  T   
Sbjct: 65  VLVSDVKKIEEVAYVEEKNREAIEKLIAKFWPGGLTIIL--KKKEWIPNIMTADGDTVGV 122

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     +K+I+  G  L   SAN SG+ +       LS +  + + +I+DGG S +G 
Sbjct: 123 RMPALNIAQKIIKAAGGLLPTTSANISGEKTP-RAYDELSDTFKERVDIIVDGGKSPLGT 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           ESTI+++    K +ILR G + IE +++ I 
Sbjct: 182 ESTIIDMT--DKPKILRLGAISIEDIEKVIG 210


>gi|269925890|ref|YP_003322513.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789550|gb|ACZ41691.1| Sua5/YciO/YrdC/YwlC family protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 205

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 9/209 (4%)

Query: 1   MQIMS-ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M I   I D  A+R+A +F   G  IA PT+TVYG+     +P A+ ++Y  K+RP   P
Sbjct: 1   MAIRKPIEDKEAVRQAIDFALKGELIAFPTDTVYGVG-SIVDPQAVSKIYRAKERPLDKP 59

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           +   +SD S ++K+A  +D +++ LA+ FWPG LTLV+   +  D+     +   T  FR
Sbjct: 60  IPILLSDDSYLEKYAKDIDAIAMELARTFWPGALTLVV--RAREDVAEAVGSKDGTVGFR 117

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P     +++I   G  +A+ SAN SG+ +      +    +   + +I+DGG  +IG  
Sbjct: 118 IPDYEPAREIIRQCGGAMAVTSANISGERNPLTADDV-EHDLGDRVAIILDGGPCRIGKP 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206
           ST+V++  EK + I+R G L  E ++  +
Sbjct: 177 STVVDLSKEKPL-IVRKGAL-AEQIRAIL 203


>gi|226360605|ref|YP_002778383.1| hypothetical protein ROP_11910 [Rhodococcus opacus B4]
 gi|226239090|dbj|BAH49438.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 218

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 5/209 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +  + S  L  A   L AG  + +PT+T+YG+  D+ +  A+  L   K R    P+   
Sbjct: 9   LPDSRSAGLSAAKNALKAGRLVVLPTDTLYGIGADAFDSEAVAALLRAKGRGRDMPVPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V   + +     SV P +  L + FWPG L+LV++   +  +         T   R+P  
Sbjct: 69  VGSWNTIDGLVYSVRPQARDLIRAFWPGGLSLVVEQAPS--LAWDLGDTRGTVMLRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLA+ SAN SG+   T V+      +     + +DGG ++ G  STIV+
Sbjct: 127 PVALELLREVGPLAVSSANVSGRPPATTVEEA-REQLGGSASVYLDGGRAEQGQASTIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELE 211
           +      RILR G +    +   + V  E
Sbjct: 186 LTGAAP-RILRVGAVPTGDVADVLGVTAE 213


>gi|328885061|emb|CCA58300.1| YrdC or Sua5 family protein, required for
           threonylcarbamoyladenosine (t(6)A) formation in tRNA
           [Streptomyces venezuelae ATCC 10712]
          Length = 215

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 5/198 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+TVYG+  D+ +  A+  L   K R    P    +   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFSSEAVADLLAAKGRGRNMPTPVLIGSPNT 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +          +  L   FWPG LTLV     +       T    T   R+P       +
Sbjct: 75  LHGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAIRMPLHPVAIEL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            T   P+A+ SAN +G  S  +        +   + + +DGG +   + S+IV+V  +  
Sbjct: 133 LTEVGPMAVSSANLTGHPSPEDC-DAAQQMLGDSVSVYLDGGPTPGIVPSSIVDVTGKVP 191

Query: 189 VRILRPGGLEIETLKRAI 206
           V +LR G L  E L++ +
Sbjct: 192 V-LLRQGALSPEELRKVV 208


>gi|255038761|ref|YP_003089382.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
           18053]
 gi|254951517|gb|ACT96217.1| Sua5/YciO/YrdC/YwlC family protein [Dyadobacter fermentans DSM
           18053]
          Length = 208

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 7/191 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           D   +R+  + L  G  +  PT+TVYGL  D  N  A+ ++  IK  +P  N       D
Sbjct: 14  DERRVRQVVDCLRNGGLVIYPTDTVYGLGCDIYNTRAVEKIARIKGIKPQKNDFSFICYD 73

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +S +   A V   +    K   PGP T +L+  +T+++  L   N KT   RVP     +
Sbjct: 74  LSHISDFARVGNTAFKTMKRVLPGPYTFILE--ATSNVPKLLNTNKKTVGIRVPDNLIPR 131

Query: 127 LI-ETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           LI +  G+P+   S     +I   +    ++      ++ +++DGG     + STIV   
Sbjct: 132 LIVKELGNPIVTTSIRDDDEIIEYSTDPELIFEKFQHQVDMVVDGGYGG-NVASTIVKAD 190

Query: 185 CEKKVRILRPG 195
            +    I+R G
Sbjct: 191 GDD-FEIIREG 200


>gi|315443362|ref|YP_004076241.1| translation factor SUA5 [Mycobacterium sp. Spyr1]
 gi|315261665|gb|ADT98406.1| translation factor SUA5 [Mycobacterium sp. Spyr1]
          Length = 221

 Score =  186 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 5/211 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   L  G  + +PT+TVYG+  D+ +  A+  L + K R    P+   V    
Sbjct: 15  ATGIASAISALKEGRLVVMPTDTVYGIGADAFDGEAVAALLDAKGRGRDMPVPVLVGSWH 74

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++     V   +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 75  TIQGLVYTVPNSAKELIRAFWPGALSLVVHQAPSLQW--DLGDANGTVMLRMPLHPVAIE 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG              +   + + +DGG ++    STIV++    
Sbjct: 133 LLREVGPMAVSSANISGSPPAVTAAQA-REQLGDRVEVYLDGGPAEQQAASTIVDLTGAH 191

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS 218
             R+LR G + +E +   + VE +  +  T 
Sbjct: 192 P-RVLRQGPVTLEAIADVLGVEAQSLLAPTE 221


>gi|309812117|ref|ZP_07705875.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185]
 gi|308433804|gb|EFP57678.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185]
          Length = 305

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 7/213 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+  A   +  G  + +PT+TVYG+  D  NP  +  L   K R    P    V + + V
Sbjct: 16  AIEAAHAAVGEGKLVVLPTDTVYGVGADPFNPDGVAALLAAKGRGRDKPPAVLVPNPATV 75

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           +  A SV   +  L   FWPG LTL+     +       T    T   R+P       + 
Sbjct: 76  EGLAMSVPSYARRLMDRFWPGGLTLIFRAQPSLMWDLGDTNG--TVGLRMPDHEIALELL 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA+ SANR+GQ  +T +     +     + + +DGG    GL STI++      V
Sbjct: 134 QATGPLAVSSANRTGQPPVTTITEAGFA-FGPAVEVYLDGGTCDDGLPSTILDCTKPDPV 192

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
            +LR G +    L+  +       +D T  P S
Sbjct: 193 -MLRRGTITPAQLREVLGPID--LLDSTGAPLS 222


>gi|145222897|ref|YP_001133575.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium gilvum PYR-GCK]
 gi|145215383|gb|ABP44787.1| translation factor SUA5 [Mycobacterium gilvum PYR-GCK]
          Length = 221

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 5/211 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A   L  G  + +PT+TVYG+  D+ +  A+  L + K R    P+   V    
Sbjct: 15  ATGIASAISALKEGRLVVMPTDTVYGIGADAFDGEAVAALLDAKGRGRDMPVPVLVGSWH 74

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +      V   +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 75  TISGLVYTVPNSAKELIRAFWPGALSLVVHQAPSLQW--DLGDANGTVMLRMPLHPVAIE 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG  +           +   + + +DGG ++    STIV++    
Sbjct: 133 LLREVGPMAVSSANISGSPAAVTAAQA-REQLGDRVEVYLDGGPAEQQAASTIVDLTGAH 191

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS 218
             R+LR G + +E +   + VE +  +  T 
Sbjct: 192 P-RVLRQGPVTLEAIADVLGVEAQSLLAPTE 221


>gi|239928892|ref|ZP_04685845.1| hypothetical protein SghaA1_11775 [Streptomyces ghanaensis ATCC
           14672]
 gi|291437219|ref|ZP_06576609.1| translation factor SUA5 [Streptomyces ghanaensis ATCC 14672]
 gi|291340114|gb|EFE67070.1| translation factor SUA5 [Streptomyces ghanaensis ATCC 14672]
          Length = 215

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+  P A+  L   K R    P    
Sbjct: 9   DATDRTTGLREAASAIRRGELVVLPTDTVYGIGADAFTPDAVADLLAAKGRGRTMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +         ++  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  +  N        +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTDVGPMAVSSANLTGHPAPENC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     V +LR G +  E L++ +
Sbjct: 186 VTRPVPV-LLREGAISPEELRKVV 208


>gi|94969639|ref|YP_591687.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
 gi|94551689|gb|ABF41613.1| translation factor SUA5 [Candidatus Koribacter versatilis Ellin345]
          Length = 215

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 10/211 (4%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     +   +    + L AG+ + +PT+T YGLA D  N  A+ R+YEIK R   
Sbjct: 4   EIIKINSAEPEQKLVAYVADQLKAGMVLGMPTDTFYGLAADPFNLRAVERIYEIKSRSRH 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            PL   +  +   ++ A   P S + LA+ FWPGPLT+++   +   +   +TAN     
Sbjct: 64  KPLSLMIESVDQAEELAQDLPSSFYLLARRFWPGPLTMII--RAHARLPLKATANSGNIA 121

Query: 117 FRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       +++  G P+   SAN SGQ   T  +  L   + + +PLIIDGG S   
Sbjct: 122 VRIPSAPIPLAVLKAAGLPITATSANLSGQAECTTAR-ALKQQMEERLPLIIDGGNSPRD 180

Query: 176 LESTIVNV-QCEKKVRILRPGGLEIETLKRA 205
           + STIV++   + + RI+R G +  E +   
Sbjct: 181 VHSTIVDLSSGDGQWRIIREGAVSQEQISEM 211


>gi|68536429|ref|YP_251134.1| hypothetical protein jk1344 [Corynebacterium jeikeium K411]
 gi|68264028|emb|CAI37516.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
          Length = 219

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 9/212 (4%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           + +  TD      AL  A   +  G  + +PT+TVYG+  D+ +  A+  L   K R   
Sbjct: 3   RTVDATDPQNREAALDTAANAVKGGRLVVLPTDTVYGIGCDAFDNEAVAALLRAKGRGPD 62

Query: 58  NPLICHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V   + ++        +   L + FWPG L++V+    +   +   T    T  
Sbjct: 63  MPVPVLVPSWTTIQGLVREYTYNMRKLVEAFWPGGLSMVVHQAPSLPWNLGDT--RGTVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SGQ   TNV+ +    +  ++   IDGG +  G+
Sbjct: 121 LRMPNQPIALELLERTGPMAVSSANISGQPPATNVQ-MAEDQLGADVTTYIDGGEAHHGV 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208
            STIV++   +  RILR G    E +   + +
Sbjct: 180 ASTIVDLSSGRP-RILREGAATTERVAEVLGM 210


>gi|20094073|ref|NP_613920.1| translation factor (SUA5) [Methanopyrus kandleri AV19]
 gi|19887062|gb|AAM01850.1| Translation factor (SUA5) [Methanopyrus kandleri AV19]
          Length = 212

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 4/205 (1%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++   D +A++     L AG  +AIP +TVY L+ D+ N  A+RRLY  K+RP   P+  
Sbjct: 4   VLEEEDPHAVKHVVRALRAGKLVAIPCDTVYSLSCDATNSEAVRRLYAAKERPKDKPVSV 63

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V       +     P      +   PGP+T+V        + P   A  +T   R+P  
Sbjct: 64  AVHSPEKALELLEPVPRLEAALETLTPGPVTIVAPRRPGV-VAPEVAAGRRTLGVRIPDH 122

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            F  +++  +G P+   SAN SG+ + T+   +    +   + ++++G   + G  ST++
Sbjct: 123 PFFLRVVRRFGKPIVTTSANVSGRPAPTDPDEVF-EQLGDRLDILVEGE-CRFGEPSTVI 180

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206
            +  E  + ILR G +  E +   +
Sbjct: 181 ELTPEGNIDILREGAMPKEEILETL 205


>gi|227487984|ref|ZP_03918300.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092075|gb|EEI27387.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 212

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 5/202 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T    L  A + ++AG  + IPT+TVYG+  ++ NP A+ +L + K R    P+   V  
Sbjct: 12  TREVGLNSAADAVEAGRLVVIPTDTVYGIGCNAFNPEAVNKLLQAKHRGPDMPVPVLVGS 71

Query: 67  ISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
              V+  +      ++ L + FWPG L++V+    +   +   T    +   R+P     
Sbjct: 72  WDTVRGLSRDYTRQMNVLIEAFWPGGLSIVVPQAPSLTWNLGDTNG--SVMLRMPLQKLA 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             +     P+A+ SAN SGQ    N +      +   + + ++GG ++IG  STI+++  
Sbjct: 130 IELLQKTGPMAVSSANISGQPPALNAREA-EEQLGNSVSVYLEGGQAEIGTPSTIIDLTQ 188

Query: 186 EKKVRILRPGGLEIETLKRAIS 207
                ILR G +  E +   + 
Sbjct: 189 ATP-TILREGAIPSEKIFEVLK 209


>gi|297192051|ref|ZP_06909449.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719499|gb|EDY63407.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 215

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +P A+  L E K R    P    
Sbjct: 9   DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSPEAVADLLEAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   +WPG LTLV     +   +   T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEQAWELVDAYWPGALTLVTKHQPSLQWNLGDT--RGTVAIRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  S  +        +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPEDCDAAQG-MLGDSVSVYLDGGPTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  +  V +LR G L  + L++ +
Sbjct: 186 VTGKVPV-LLREGALSADELRKVV 208


>gi|147669398|ref|YP_001214216.1| translation factor SUA5 [Dehalococcoides sp. BAV1]
 gi|146270346|gb|ABQ17338.1| translation factor SUA5 [Dehalococcoides sp. BAV1]
          Length = 213

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 6/199 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A + L  G  +  PT+TVY +   +RN  A+ R+++IK R     L   + DIS +
Sbjct: 13  QINRAVQVLKNGGVVIFPTDTVYAVGALARNTHAVNRVFDIKGRANTKGLPALIGDISQI 72

Query: 71  KKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
            + A + P L+  LA  +WPG LTLVL    T +I    T   +T   R+P      +++
Sbjct: 73  HQVAKIFPLLARKLAAEYWPGGLTLVLP--KTDNIPLELTGGNETVAIRIPNQAAVIEML 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+   SAN SG  S  N        +   +  I+DGG    G+ESTIV V  ++ 
Sbjct: 131 KRVAEPVTGTSANLSGCKSSLNASEAKI-QLGDRVDFILDGGQVSGGVESTIVAVNNDE- 188

Query: 189 VRILRPGGLEIETLKRAIS 207
           ++I+R G ++   + +   
Sbjct: 189 LKIIRQGAIKESDILKTAG 207


>gi|120405291|ref|YP_955120.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958109|gb|ABM15114.1| translation factor SUA5 [Mycobacterium vanbaalenii PYR-1]
          Length = 220

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 9/213 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +    TD       +  A   L  G  + +PT+TVYG+  D+ +  A+  L   K R   
Sbjct: 3   ETFDCTDPEQRDTGIASAISALKGGRLVVMPTDTVYGIGADAFDGEAVAALLAAKGRGRN 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V     ++    SV   +  L + FWPG L+LV+    +            T  
Sbjct: 63  MPVPVLVGSWHTIQGLVYSVPNSAKELIRAFWPGALSLVVRQAPSLQW--DLGDANGTVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SG+             +   + + +DGG ++   
Sbjct: 121 LRMPLHPVAIELLREVGPMAVSSANISGRPPAVTAAQA-REQLGDLVEVYLDGGPAEQQA 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209
            STIV++      R+LR G + ++ +   + V+
Sbjct: 180 ASTIVDLTGAHP-RVLREGPVTLDAIADVLGVD 211


>gi|329939828|ref|ZP_08289129.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoaurantiacus
           M045]
 gi|329301398|gb|EGG45293.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoaurantiacus
           M045]
          Length = 215

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L E K R    P    
Sbjct: 9   DATDRATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLEAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +         ++  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGET--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  +  +        +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEFGPMAVSSANLTGHPAPEDC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     V +LR G L  E L++ +
Sbjct: 186 VTGRVPV-LLRQGALSPEELRKVV 208


>gi|325002822|ref|ZP_08123934.1| translation factor SUA5 [Pseudonocardia sp. P1]
          Length = 220

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 5/206 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L  A   + +G  + +PT+TVYG+  D+ + TA+R L   K+R    P+   V   +
Sbjct: 19  QRGLTAAARAVRSGELVVLPTDTVYGIGCDAFSGTAVRNLLSAKRRGPDMPVGVLVGSWT 78

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +     SV P +  L + FWPG ++LVL+   +  +     +   T   R+P       
Sbjct: 79  TIDGLVTSVPPSARALIEAFWPGEVSLVLEHAPS--LAWDLGSTRGTVMLRMPLHPVALE 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG    + V   ++  +   + + +DGG S   + STIV++   +
Sbjct: 137 LLREVGPMAVSSANTSGNPPASTVTEAIT-QLASSVQVYLDGGPSGDPVASTIVDLTGVR 195

Query: 188 KVRILRPGGLEIETLKRAISVELEYC 213
             R+LR GG+  E +   +  E++  
Sbjct: 196 P-RLLREGGVSAEQVAEVVGQEVDRP 220


>gi|197117703|ref|YP_002138130.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter
           bemidjiensis Bem]
 gi|197087063|gb|ACH38334.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter
           bemidjiensis Bem]
          Length = 202

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  E L  G  +A PT+T YG+     +   I R+Y++K+R    P     SDIS
Sbjct: 12  PRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDIS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + ++A V   +    +   PGP T VL+  + + +  L T   +T   R+P       +
Sbjct: 72  EISRYARVSNYAFKQLRRLLPGPYTFVLE--ANSVVPDLVTTKQRTVGIRMPDNNICLAI 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  GHP+   SAN SG+  I N   +    + K + L++DGG     + S++V++  + 
Sbjct: 130 VKELGHPIVTTSANLSGEDPIGNPWQV-EHELGKLLDLVVDGGDLSADV-SSVVSLIGDS 187

Query: 188 KVRILRPG 195
              +LR G
Sbjct: 188 P-ELLRKG 194


>gi|297559306|ref|YP_003678280.1| Sua5/YciO/YrdC/YwlC family protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843754|gb|ADH65774.1| Sua5/YciO/YrdC/YwlC family protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 261

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 8/224 (3%)

Query: 2   QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I    D     + +  A   +  G  + +PT+TVYG+  D+ +PTA+ RL   K R   
Sbjct: 3   RIYDCADETARKDGIADAASAVRRGDLVVLPTDTVYGIGTDAFSPTAVARLLATKGRGRE 62

Query: 58  NPLICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P    V  +                L + FWPGPLTLV    +T  +         T  
Sbjct: 63  MPPPVLVGSMRAANALVDDLGNHGRDLMEEFWPGPLTLVCT--ATPSLSWDLGDTKGTVG 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN+SGQ S T V+  +     +++ + +DGG ++  +
Sbjct: 121 VRMPMDPVALDLLKEVGPMAVSSANKSGQPSATRVEEAIEQLGDEDVAVYLDGGETESRV 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220
            STIV++      R+LR G + IE L+      +         P
Sbjct: 181 SSTIVDLTYAVP-RVLRAGAISIEQLRAVCGTVIGELRKGPRKP 223


>gi|148546653|ref|YP_001266755.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida F1]
 gi|148510711|gb|ABQ77571.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida F1]
          Length = 221

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E +  G  +  PT++ Y L     + +AI R+  ++     
Sbjct: 15  QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKT 74

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD  +  L K   PGP T +L+         L     +T   
Sbjct: 75  HNFTLMCCDMSQLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHDKRRTIGL 133

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T  L+   G PL   S    G        + +   +  ++ L+IDGG   +  
Sbjct: 134 RVPDHAITLALLAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHQVDLVIDGGFGDL-K 192

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            STI+++  ++   ++R G 
Sbjct: 193 ASTIIDLSGDEP-ELIREGC 211


>gi|307327908|ref|ZP_07607090.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu
           4113]
 gi|306886426|gb|EFN17430.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu
           4113]
          Length = 215

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD    LR+A   +  G  + +PT+TVYG+  D+ N  A+  L E K R    P    
Sbjct: 9   DATDRKTGLREAASAVRRGELVVLPTDTVYGIGADAFNAEAVGDLLEAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V   + +         ++  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  VGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVARHQPSLTWDLGET--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  S           +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTDFGPMAVSSANLTGHPSP-QDCDAAQDMLGDSVSVYLDGGPTPAAVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  +  V +LR G L  E L+  +
Sbjct: 186 VTGKVPV-LLRAGALTAEQLREVV 208


>gi|170722951|ref|YP_001750639.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida W619]
 gi|169760954|gb|ACA74270.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida W619]
          Length = 221

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E +  G  +  PT++ Y L     +  AI R+  ++     +       D+S
Sbjct: 26  PRLIRQAVEIIRKGGVVVYPTDSAYALGCQIGDKAAIERVRRLRGLDKTHNFTLMCCDMS 85

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +L+         L     +T   RVP    T  L
Sbjct: 86  QLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHEKRRTIGLRVPDHGITLAL 144

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G        + +   +   + L+IDGG   +   STI+++  ++
Sbjct: 145 LAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDL-KASTIIDLSGDE 203

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 204 P-EVIREGC 211


>gi|326382084|ref|ZP_08203777.1| hypothetical protein SCNU_04032 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199510|gb|EGD56691.1| hypothetical protein SCNU_04032 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 219

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLH 82
            + +PT+TVYGL  D+ +  A+  L   K R    P+   V     V     SV P +  
Sbjct: 29  LVVMPTDTVYGLGCDAFDSEAVASLLAAKGRGRDMPVPVLVGSWHTVDGLVRSVSPQARE 88

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
           L + FWPG L+LV++   +       T+   +   R+P       +     P+A+ SAN 
Sbjct: 89  LVQAFWPGGLSLVVEQAPSLAWDLGDTSG--SVMIRMPLHPVAIELLREVGPMAVSSANI 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG    T         +  ++ + +DGG +   + STIV++   +  +ILR G +  E L
Sbjct: 147 SGHPPATTAPEA-RDQLQDKVSVYLDGGPADHAVASTIVDLTGPEP-KILREGAITAEHL 204

Query: 203 KRAISVELE 211
              + V+ E
Sbjct: 205 AEVLDVDAE 213


>gi|325958344|ref|YP_004289810.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21]
 gi|325329776|gb|ADZ08838.1| Sua5/YciO/YrdC/YwlC family protein [Methanobacterium sp. AL-21]
          Length = 204

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 12/211 (5%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+I+ I     D + + +A E+L  G  +  PT+TVYG+A ++ N +A+ ++++ KKR  
Sbjct: 1   MKILKINNKNPDPDTITQAKEYLKQGKIVVYPTDTVYGIAANAYNESAVSKVFDTKKRLK 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
              +   +++I  +   A +D  +  L +  +PGP T+++       I PL T       
Sbjct: 61  TKAVSLCLAEIEAINDVAFMDNKTEILVEQLFPGPFTVIM--RKKEQISPLLTGGTNKIG 118

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P    ++ L   +  P+   SAN SG       K ++   +   + L++D G+ K G
Sbjct: 119 IRIPDNKLSRDLASEF--PITSTSANISGLNVPETPKEVV-EQLGDSVDLVLDAGVCKYG 175

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
             ST+V++  +K + ILR G    ETL   +
Sbjct: 176 YHSTVVDMTGDKPI-ILRMGA-GYETLMNLL 204


>gi|302558379|ref|ZP_07310721.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus
           Tu4000]
 gi|302475997|gb|EFL39090.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus
           Tu4000]
          Length = 215

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+  P A+  L E K R    P    
Sbjct: 9   DATDRATGLREAASAVRRGELVVLPTDTVYGIGADAFTPDAVGDLLEAKGRGRNMPSPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +         ++  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  +  +        +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPAPEDC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     V +LR G +  E L++ +
Sbjct: 186 VTRPVPV-LLREGAISPEELRKVV 208


>gi|253701566|ref|YP_003022755.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21]
 gi|251776416|gb|ACT18997.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M21]
          Length = 202

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  E L  G  +A PT+T YG+     +   I R+Y++K+R    P     SDIS
Sbjct: 12  PRLVAKVVEVLKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDIS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + ++A V   +    +   PGP T VL+  + + +  L T   +T   R+P       +
Sbjct: 72  EISRYARVSNYAFKQLRRLLPGPYTFVLE--ANSVVPDLVTTKQRTVGIRMPDNNICLAI 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  GHP+   SAN SG+  I N   +    + K + L++DGG     + S++V++  + 
Sbjct: 130 VKELGHPIVTTSANLSGEDPIGNPWQV-EHELGKLLDLVVDGGDLSADV-SSVVSLIGDS 187

Query: 188 KVRILRPG 195
              +LR G
Sbjct: 188 P-ELLRKG 194


>gi|328952765|ref|YP_004370099.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453089|gb|AEB08918.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 214

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 6/203 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L  A   L  G  IA PTET Y LAVD+   +A+ RL ++KKRP    L+  ++D+
Sbjct: 12  DDRILDPALPTLQEGGVIACPTETYYALAVDAFQESALHRLLQLKKRPRSKGLLVLLADL 71

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
            M+    A V  L+  L   FWPGPLTL+L      D+    T    T   RV      +
Sbjct: 72  QMLDLVAAEVPSLAQRLMAQFWPGPLTLILKARP--DLPKALTGGDNTIGVRVSSHPLAQ 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG P+   SAN SGQ  + +    +   +  +I LI+       GL STI+N+ C
Sbjct: 130 HLPQMYGRPVTGTSANLSGQAPMISASQ-IEQELGAQIDLILKNSPCGGGLPSTILNITC 188

Query: 186 EKKVRILRPGGLEIETLKRAISV 208
           +  + ++R G + +E L+  I V
Sbjct: 189 KPPL-LVRAGAVSLEHLEECIGV 210


>gi|297569316|ref|YP_003690660.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925231|gb|ADH86041.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 221

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 6/203 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A   +  G  +A PTET YGLAVD  N  A+ RL+ +K+R    P++C V D  
Sbjct: 13  PAELEQAAAIIRRGGIVAFPTETYYGLAVDPFNREALSRLFALKRRAPDKPILCLVPDRE 72

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +   A  + P    L + FWPGPLTL+        +    T    T   R+       +
Sbjct: 73  HLFSLADSIPPSYEPLMEAFWPGPLTLIFTAREEVPVS--LTGYSGTVGVRLSSHPVAAR 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L + YG  +   SAN SG  +  N   +  + +  ++  I+DGG +  G  ST+V V+ E
Sbjct: 131 LAQIYGGAITATSANFSGHPAAVNAAEV-GAQLGPDVDYILDGGETPGGAGSTLVGVENE 189

Query: 187 KKVRILRPGGLEIETLKRAISVE 209
           + + + RPG +  + L   +  E
Sbjct: 190 Q-LVLRRPGVITRQELNDVLGPE 211


>gi|312194812|ref|YP_004014873.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EuI1c]
 gi|311226148|gb|ADP79003.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EuI1c]
          Length = 218

 Score =  184 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 9/213 (4%)

Query: 1   MQIMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+    TD  A    L  A   +  G  + +PT+TVYGL  D+ + +A+R L   K R  
Sbjct: 1   MRRFDCTDPAARQAGLEAAASAVGRGDLVVLPTDTVYGLGADAFDASAVRALLATKNRGR 60

Query: 57  MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P+   +     +    S V      L + FWPG LT+++    +  +      +  T 
Sbjct: 61  NMPVPVLIGSWRTLDGLVSHVSMPVRELTRAFWPGGLTVIVRQAPS--LRWDLGESRGTV 118

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       +     P+A+ SAN SGQ + T     + + + +++ + +D G +  G
Sbjct: 119 AVRMPLHPVAIDLLGRTGPMAVSSANLSGQPAATTADEAV-AQLGEQVDVYLDAGPATHG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208
           + STIV+   +   R++R G +++ TL+  + +
Sbjct: 178 VASTIVDCTTDVP-RVVRLGAIDLPTLRSVLPL 209


>gi|322418699|ref|YP_004197922.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18]
 gi|320125086|gb|ADW12646.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. M18]
          Length = 202

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  E L  G  +A PT+T YG+     +   I R+Y+IK+R    P     SD+S
Sbjct: 12  PRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQIKQRDRKKPFSFICSDMS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + ++A V   +    +   PGP T VL+  + + +  L T   +T   RVP       +
Sbjct: 72  EISRYARVSNYAFKQLRRLLPGPYTFVLE--ANSVVPDLVTTKQRTVGIRVPDNKICLAI 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   SAN SG+  I N    +   + +++ L++DGG     + S++V++  ++
Sbjct: 130 VKELGAPIVTTSANLSGEDPIGN-PWAVEHELGRQLDLVVDGGDLSADV-SSVVSLIGDR 187

Query: 188 KVRILRPG 195
              +LR G
Sbjct: 188 P-EVLRKG 194


>gi|237785866|ref|YP_002906571.1| hypothetical protein ckrop_1283 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758778|gb|ACR18028.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 218

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 9/211 (4%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           I   TD +     L  A   +  G  + IPT+TVYG+  D+ +  A+  L   K R    
Sbjct: 4   IYDCTDQDERRRGLEAAQSAVKGGRLVVIPTDTVYGIGCDAFDNDAVAALLRAKHRGPDM 63

Query: 59  PLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P+   V     V      V P    L + FWPG L+ V+    +       T    +   
Sbjct: 64  PVPVLVGSWDTVDGLVQTVTPRMRELVQAFWPGGLSFVVTQAPSLPWDLGDTNG--SVML 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       +     P+A+ SAN SGQ   T+        +  E+ + +D G + IG  
Sbjct: 122 RMPLQPVAIELLRATGPMAVSSANISGQPPATSAIAA-KQMLGSEVSVYLDDGEATIGEP 180

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISV 208
           STI+++       +LR G +  E +   I  
Sbjct: 181 STIIDLTS-PTPHLLREGAISAERISEVIGT 210


>gi|310779285|ref|YP_003967618.1| translation factor SUA5 [Ilyobacter polytropus DSM 2926]
 gi|309748608|gb|ADO83270.1| translation factor SUA5 [Ilyobacter polytropus DSM 2926]
          Length = 209

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 104/201 (51%), Gaps = 9/201 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L    + + +G  I  PT+TVYG+        A++++Y  K+R   +PLI  VSD ++V
Sbjct: 12  DLPTVAKKVKSGELIIYPTDTVYGVGGIIEKEEALKKIYVAKERTFSSPLIALVSDENIV 71

Query: 71  KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +K A +D        L K FWPG LT++L      ++  +  +  ++   R+P       
Sbjct: 72  EKIAYIDKNKEKIEKLMKSFWPGALTIIL--RKKKNVPSVMVSGGESIGVRMPNHPLALD 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I   G  LA  SAN SG+ S      + S    K + +++DGG   +G+ESTI++++  
Sbjct: 130 IIRACGGILATTSANISGEPSPKRFSDV-SEEFKKRVDILVDGGACNLGIESTIIDMR-- 186

Query: 187 KKVRILRPGGLEIETLKRAIS 207
           +K  ILR GG+  E +++ I 
Sbjct: 187 EKPFILRHGGISKEEIEKIIG 207


>gi|167035000|ref|YP_001670231.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida GB-1]
 gi|166861488|gb|ABY99895.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida GB-1]
          Length = 221

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E +  G  +  PT++ Y L     +  AI R+  ++     
Sbjct: 15  QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSAYALGCQMGDKNAIERVRRLRGLDKT 74

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD  +  L K   PGP T +L+         L     +T   
Sbjct: 75  HNFTLMCCDMSQLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHDKRRTIGL 133

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T  L+   G PL   S    G        + +   +   + L+IDGG   +  
Sbjct: 134 RVPNHVITLALLAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDL-K 192

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            STI+++  ++   ++R G 
Sbjct: 193 ASTIIDLSGDEP-ELIREGC 211


>gi|332708156|ref|ZP_08428149.1| Sua5/YciO/YrdC/YwlC family protein [Lyngbya majuscula 3L]
 gi|332353058|gb|EGJ32605.1| Sua5/YciO/YrdC/YwlC family protein [Lyngbya majuscula 3L]
          Length = 214

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+   D  A  KA + L  G  +   T+T+YG+       + I++++E+K R    PLI
Sbjct: 3   EILPADDQAARNKAVDLLKKGDVVVFSTDTIYGIGASIAKESGIKKIFEVKSRSPDKPLI 62

Query: 62  CHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +V+    +++    +   ++   +  WPG ++ +     T  + P  T+   T   R+P
Sbjct: 63  IYVASFEQLQQVTQEIPESTIESLRKIWPGAMSGIFP--KTDIVPPFVTSGKDTVAVRIP 120

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 +L+   G PLA+ SAN SG  +      + ++ + + +PL++DGG +     ST
Sbjct: 121 NHPLCLELVRQVGAPLAVTSANVSGMETQKTAPEV-AAQLGERVPLVLDGGPNPEQQPST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           +V+       ++LR G      L++AI
Sbjct: 180 LVDFTGS-PAQLLREGAWSFSKLRQAI 205


>gi|320352189|ref|YP_004193528.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
 gi|320120691|gb|ADW16237.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
          Length = 205

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 5/194 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + L  G  I  PT+T+YG+  D  N  A++R+Y+IK+RP   P     + ++
Sbjct: 14  PRLIAQAVDILQHGGVICYPTDTMYGVGCDIFNQKAVKRVYQIKRRPKDKPFSFMCASLT 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + ++  V   +  L +   PGP T VL    T  +  +     KT   RVP       +
Sbjct: 74  NISQYGHVGNTAYRLMRKNLPGPYTFVLS--GTKMVPKIMLTKQKTVGIRVPNHPVCLAM 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G+P+   SA              +     K++ LIID G   +   S+++++  E+
Sbjct: 132 LELLGNPVLNTSAMIEDDDQPVRTAMDVERLFGKQVDLIIDSG-EIVPAPSSVISLLSEQ 190

Query: 188 KVRILRPGGLEIET 201
              +LR G  +I  
Sbjct: 191 P-EVLREGRGDISA 203


>gi|262201850|ref|YP_003273058.1| sua5/YciO/YrdC/YwlC family protein [Gordonia bronchialis DSM 43247]
 gi|262085197|gb|ACY21165.1| Sua5/YciO/YrdC/YwlC family protein [Gordonia bronchialis DSM 43247]
          Length = 219

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 5/210 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           + S  +R A   + AG  + +PT+T+YGL  D+ +  A+  L   K R    P+   V  
Sbjct: 12  SRSAGIRAAVGAIKAGRLVVMPTDTLYGLGCDAFDSDAVSALLAAKNRGRDMPVPVLVGS 71

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
              +     +V   +  L + FWPG L+LV++   +       T    T   R+P     
Sbjct: 72  WHTIDGLVLTVSQAARDLVEAFWPGGLSLVVEQAPSLAWDLGDTDG--TVMLRMPLHPVA 129

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             +     P+A+ SAN SGQ   T       + + +++ + +DGG +     STIV+V  
Sbjct: 130 IEVLREVGPMAVSSANVSGQRPATTADDA-RAQLGEDVAVYLDGGPAPAAQASTIVDVTG 188

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVD 215
               RILR G +  E +   + V+    ++
Sbjct: 189 PVP-RILRVGAVTTEQVAEVLDVDPASLLE 217


>gi|26991184|ref|NP_746609.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
 gi|24986231|gb|AAN70073.1|AE016647_3 Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
          Length = 221

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E +  G  +  PT++ Y L     + +AI R+  ++     
Sbjct: 15  QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKT 74

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD  +  L K   PGP T +L+         L     +T   
Sbjct: 75  HNFTLMCCDMSQLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHDKRRTIGL 133

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T  L+   G PL   S    G        + +   +   + L+IDGG   +  
Sbjct: 134 RVPDHAITLALLAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDL-K 192

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            STI+++  ++   ++R G 
Sbjct: 193 ASTIIDLSGDEP-ELIREGC 211


>gi|222055790|ref|YP_002538152.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. FRC-32]
 gi|221565079|gb|ACM21051.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sp. FRC-32]
          Length = 202

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A E L+ G  +A PT+T YG+     N   I R+Y IK+R    P     +D+S
Sbjct: 12  PRLLAQAVEILEKGGVVAYPTDTTYGIGCSIFNKKGIERIYAIKQRDRKKPFSFICADLS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   +  + K F PGP T +LD  +T+ +  L     KT   R+P       +
Sbjct: 72  DIAHYARVSNYAFKVMKRFLPGPYTFILD--ATSVVPDLCMTKQKTVGIRIPANKICLAI 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            +  GHP+   SAN SG+         + +++ K I L +DGG+    + S++V++  ++
Sbjct: 130 TKLLGHPIITTSANLSGED-PIGDPFQVENTLGKLIDLTVDGGVLTADV-SSVVSLIGDR 187

Query: 188 KVRILRPG 195
              +LR G
Sbjct: 188 P-EVLRKG 194


>gi|300858258|ref|YP_003783241.1| hypothetical protein cpfrc_00840 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685712|gb|ADK28634.1| hypothetical protein cpfrc_00840 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205979|gb|ADL10321.1| Putative translation factor SUA5 [Corynebacterium
           pseudotuberculosis C231]
 gi|302330532|gb|ADL20726.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276214|gb|ADO26113.1| Putative translation factor SUA5 [Corynebacterium
           pseudotuberculosis I19]
          Length = 216

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 9/215 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I   +D++    AL+ A + +  G  + +PT+T+YG+  D+ +  A+ +L   K+R   
Sbjct: 3   RIYDCSDASIRNAALKVASDAVKDGRLVVMPTDTLYGIGCDAFDNNAVAKLLTTKQRGPD 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V      +    S       L + FWPG L++V+    +   +   T    T  
Sbjct: 63  MPVPVLVGSWDTARGLVHSYSEQMRTLIEAFWPGALSIVVAQAPSLQWNLGDT--RGTVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SGQ   T         +   +   +DGG + +G 
Sbjct: 121 LRMPLHPVAIELLRETGPMAVSSANVSGQKPATTALAA-QEQLGDAVSAYLDGGATPVGT 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
            STI+++      RILR G +  E +   + +++E
Sbjct: 180 ASTIIDLSGPSP-RILREGAISAERIAEVLDLDVE 213


>gi|226307402|ref|YP_002767362.1| hypothetical protein RER_39150 [Rhodococcus erythropolis PR4]
 gi|229490001|ref|ZP_04383854.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121]
 gi|226186519|dbj|BAH34623.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
 gi|229323102|gb|EEN88870.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121]
          Length = 220

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 5/198 (2%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80
           G  + +PT+T+YGLA D+ +  A+  L   K R    P+   V   + +     SV P +
Sbjct: 27  GRLVVLPTDTLYGLAADAFDSEAVTSLLRAKGRGRDMPVPVLVGSWNTIDGLVYSVRPQA 86

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             L + FWPG L+LV++   +  +         T   R+P       +     PLA+ SA
Sbjct: 87  RDLIRAFWPGGLSLVVEQAPS--LAWDLGDTRGTVMLRMPLHPVALELLRDVGPLAVSSA 144

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG+   T V+      +     + +DGG ++  + STIV++      RILR G +  E
Sbjct: 145 NISGRPPATTVEEA-RDQLGGSASVYLDGGKAEHAVASTIVDLTGNSP-RILRVGAVSAE 202

Query: 201 TLKRAISVELEYCVDETS 218
           ++   +    E  V+  S
Sbjct: 203 SIAEVLGTSPESLVEGVS 220


>gi|255578866|ref|XP_002530287.1| Protein SUA5, putative [Ricinus communis]
 gi|223530185|gb|EEF32094.1| Protein SUA5, putative [Ricinus communis]
          Length = 233

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 4/193 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A E L AG  IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   + D+S +K 
Sbjct: 29  EEAVEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKHTSPLAICIGDVSDIKH 88

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A  D L   L     PG +T+VL+   ++ +       L T   RVP C F +++    
Sbjct: 89  FAVTDHLPNGLLDSLLPGAVTVVLNRGESSALEKSLNPGLDTIGVRVPDCNFIREIAHGL 148

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           G  +A+ SAN SG+ S   +K     ++ +    + DGG+   G E ST+V++    K +
Sbjct: 149 GRAVALTSANLSGKPSSVCIKD--FENLWEHCAYVYDGGVLPSGREGSTVVDLSRLGKYK 206

Query: 191 ILRPGGLEIETLK 203
           ILRPG  + ET++
Sbjct: 207 ILRPGSAKEETVE 219


>gi|289643110|ref|ZP_06475240.1| Sua5/YciO/YrdC/YwlC family protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507074|gb|EFD28043.1| Sua5/YciO/YrdC/YwlC family protein [Frankia symbiont of Datisca
           glomerata]
          Length = 218

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 9/208 (4%)

Query: 4   MSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
              TDS      L  A   +  G  + +PT+T+YG+  D+ +  A+R L   K R    P
Sbjct: 5   YDCTDSEVRVAGLEAATRAVRHGGLVVLPTDTLYGIGADAFDQVAVRALLTAKGRGPEMP 64

Query: 60  LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           +   +     +      V      L + FWPG LTL++    +  +         T   R
Sbjct: 65  VPVLIGSWRTLDGLVERVTEQVRDLVRAFWPGGLTLIVRHAPS--LSWDLGDARGTVAVR 122

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +P       +     P+A+ SAN SG+   T       + +   + + +DGG   +G+ S
Sbjct: 123 MPLHPVAIELLGRTGPMAVSSANISGRPPATTADDAF-AQLGDSVEVYLDGGPCALGVAS 181

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAI 206
           TIV+   +   R+LR G +++  L+  +
Sbjct: 182 TIVDCTDDVP-RVLRVGAVDLAALRAVV 208


>gi|297157197|gb|ADI06909.1| hypothetical protein SBI_03788 [Streptomyces bingchenggensis BCW-1]
          Length = 215

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 7/200 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              LR+A   +  G  + +PT+TVYG+  D+ N  A+  L E K R    P    V   +
Sbjct: 14  KTGLREAASAVRRGELVVLPTDTVYGIGADAFNAEAVGDLLEAKGRGRNMPTPVLVGSPN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            +      +   +  L   FWPG LTLV     +       T    T   R+P      +
Sbjct: 74  TLHGLVTDLSEQAWELVDAFWPGALTLVARHQPSLTWDLGET--HGTVAVRMPLHPVAIE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+  +G P+A+ SAN +G  S           +   + + +DGG +   + S+IV+V  +
Sbjct: 132 LLNDFG-PMAVSSANLTGHPSP-QDCDAAQDMLGDSVSVYLDGGPTPAAVPSSIVDVTSK 189

Query: 187 KKVRILRPGGLEIETLKRAI 206
             V +LR G L  E L+  +
Sbjct: 190 VPV-LLRAGALSAEQLREVV 208


>gi|172040387|ref|YP_001800101.1| hypothetical protein cur_0707 [Corynebacterium urealyticum DSM
           7109]
 gi|171851691|emb|CAQ04667.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
           7109]
          Length = 219

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 5/202 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+  A   +  G  I +PT+T+YG+  D+ +  A+  L + K R    P+   +    
Sbjct: 14  EGAIVTAENAVKGGRLIVMPTDTLYGIGCDAFDNAAVEALLQAKHRGPDMPVPVLIGSWE 73

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            V+   A        L + FWPG L+LV+    +   +   T    T   R+P       
Sbjct: 74  TVEGLVAEFSAHLRRLVEAFWPGGLSLVVPQAPSLPWNLGDT--RGTVMLRMPNHPIAID 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SGQ   T V  +    +   + + +DGG + IG  STIV++   +
Sbjct: 132 LLQRTGPMAVSSANVSGQPPATTVA-MAEDQLGDSVAVYLDGGEATIGEPSTIVDLAGHR 190

Query: 188 KVRILRPGGLEIETLKRAISVE 209
             RILR G +  E +   + + 
Sbjct: 191 P-RILREGAISAEQIGEVLQMP 211


>gi|254382317|ref|ZP_04997677.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. Mg1]
 gi|194341222|gb|EDX22188.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. Mg1]
          Length = 215

 Score =  183 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD    LR+A   +  G  + +PT+T+YG+  D+ +  A+  L   K R    P    
Sbjct: 9   DATDRKTGLREAASAVRRGELVVLPTDTLYGIGADAFSAEAVGDLLAAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +  +         T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEQAWELVDAFWPGALTLVAKHQPS--LAWDLGETRGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN SG  +  +        +   + + +DGG +     S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLSGHPAPEDC-DAAREMLGDSVSVYLDGGPTPGIQPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  +  V +LR G L  E L+  +
Sbjct: 186 VTGKVPV-LLREGALTAEQLREVV 208


>gi|302554166|ref|ZP_07306508.1| yrdC domain-containing protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471784|gb|EFL34877.1| yrdC domain-containing protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 215

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 5/198 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+TVYG+  D+    A+  L E K R    P    +   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFASEAVGDLLEAKGRGRNMPSPVLIGSPNT 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +         L+  L   FWPG LTLV     +       T    T   R+P       +
Sbjct: 75  LHGLVTDFSELAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLHPVAIEL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            T   P+A+ SAN +G  +  +        +   + + +DGG +   + S+IV+V  E  
Sbjct: 133 LTEVGPMAVSSANLTGHPAPEDC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVDVTQEVP 191

Query: 189 VRILRPGGLEIETLKRAI 206
            R+LR G +  + L++ +
Sbjct: 192 -RLLRAGAISADELRKVV 208


>gi|312887346|ref|ZP_07746947.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM
           18603]
 gi|311300149|gb|EFQ77217.1| Sua5/YciO/YrdC/YwlC family protein [Mucilaginibacter paludis DSM
           18603]
          Length = 206

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 8/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +  ++ +  + L  G  I  PT+TVYGL  D  NP AI  + +I+  +P          D
Sbjct: 11  NEKSIDQVVQILKRGGLIIYPTDTVYGLGCDITNPKAIDAICKIRHIKPEKANFSFICYD 70

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           +S +  +   +D  +  + K   PGP T + +  + + +  L ++N KT   RVP     
Sbjct: 71  LSHISDYIKPIDNATYRVLKKALPGPFTFIFN--ANSHVPKLLSSNKKTVGIRVPDNNIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +++++  G+P+   S     +I   +    ++       + L+IDGG     + ST+V+ 
Sbjct: 129 REIVKALGNPILSSSIRDEDEIIEYSTDPELIHEKYEGLVDLVIDGGYGD-NVPSTVVDC 187

Query: 184 QCEKKVRILRPGGLEIE 200
                  I+R G  ++E
Sbjct: 188 TTGD-FEIIREGKGDLE 203


>gi|296393118|ref|YP_003658002.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rotundus DSM
           44985]
 gi|296180265|gb|ADG97171.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rotundus DSM
           44985]
          Length = 214

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 4/189 (2%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLH 82
            + +PT+TVYGL  D+ +  A+  L   K R    P    +   + V+   A+V   +  
Sbjct: 29  LVVMPTDTVYGLGCDAFDQGAVAALLSAKGRGRDMPTPVLIGSWATVEGLAATVSDQAWQ 88

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
           L   FWPGPL+LVL +  +  +         T   R+P       +     P+A+ SANR
Sbjct: 89  LIHAFWPGPLSLVLPVAPS--LAWDLGETRGTVMVRMPLHPVALQVLAKVGPMAVSSANR 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SGQ             +   + + ++ G + +G  STI+++    +  +LR G L +  +
Sbjct: 147 SGQPPARTAAEA-REQLGDSVSVYLESGPAPLGEPSTILDLSSGGEPTVLRQGALSVRQI 205

Query: 203 KRAISVELE 211
                V + 
Sbjct: 206 TETTGVPVH 214


>gi|288559761|ref|YP_003423247.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter
           ruminantium M1]
 gi|288542471|gb|ADC46355.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter
           ruminantium M1]
          Length = 221

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 12/213 (5%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+I  +     D + + +A + +  G  I  PT+TVYGL  +  N  A++R+Y+IK R  
Sbjct: 1   MKIFKMNPENPDMDLIDEAIDIMAQGGVILYPTDTVYGLGANIFNNQAVQRIYKIKHRER 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             PL   VSDI  ++  A +D  S  +   + PGP T +L+   T  + P  +++ K   
Sbjct: 61  SKPLSVLVSDIESLELIAHLDDHSREVVNKWLPGPFTFILNKQKT--VSPYVSSSTK-VG 117

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P     + +     P+   SAN + + +++N  H +   I   I L ID G    G 
Sbjct: 118 VRIPDNKIAREL-ASIFPITTTSANIANEETLSN-PHDILKQIGDCIDLAIDVGDLTGGK 175

Query: 177 ESTIVNVQCEKKVRILRPGGLE--IETLKRAIS 207
            ST++++   K   ++R G +   +E++K  I 
Sbjct: 176 PSTVIDLTSAKP-SLVRKGLISNDLESIKEDIG 207


>gi|153004279|ref|YP_001378604.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027852|gb|ABS25620.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 205

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/191 (37%), Positives = 98/191 (51%), Gaps = 5/191 (2%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  +A PTET YGL   +R+P A+ RL   K RP   PL    +D   V++ A +D
Sbjct: 17  VLRRGGLVAYPTETFYGLGALARDPAALERLARAKLRPEGKPLPLLAADADQVREVARLD 76

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
            L+  LA+ FWPGPLTLVL  L   D     TA  +T   RVP     + L    G  + 
Sbjct: 77  GLASRLAERFWPGPLTLVLPALPGLDAA--VTAGSRTVAVRVPGSELARALARQAGGAIV 134

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
             SAN SG    ++    LS S+   I  ++DGG +  G  STIV V  E +VR++R G 
Sbjct: 135 STSANLSGDPPPSSAAQ-LSPSLVARIDHVLDGGSTPGGRPSTIVEVVGE-RVRLVRDGV 192

Query: 197 LEIETLKRAIS 207
           +  E ++ A +
Sbjct: 193 IPFEEVQAACA 203


>gi|256380139|ref|YP_003103799.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827]
 gi|255924442|gb|ACU39953.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827]
          Length = 216

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 5/196 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           + +G  + +PT+TVYG+  D+ +  A+R L   K R    P+   V   + +     SV 
Sbjct: 24  VRSGRLVVLPTDTVYGIGCDAFDAAAVRSLLAAKGRGPDMPVPVLVGSWTTIDGLVLSVP 83

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
             +  L + FWPG L+LVL    +       T    T   R+P       +     P+A+
Sbjct: 84  RQARSLIEAFWPGGLSLVLHHAPSLAWDLGQT--RGTVMLRMPLHPVALELLRDVGPMAV 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN+SG    ++        + +++ + +DGG S   + STIV++     + +LR G +
Sbjct: 142 SSANKSGFPPASSAAQA-REQLGEDVQVYLDGGPSGENVASTIVDLTGTDPL-VLREGAV 199

Query: 198 EIETLKRAISVELEYC 213
            +  +   + VE+E  
Sbjct: 200 PVADIASVLGVEVEVA 215


>gi|239982317|ref|ZP_04704841.1| hypothetical protein SalbJ_22996 [Streptomyces albus J1074]
 gi|291454161|ref|ZP_06593551.1| translation factor SUA5 [Streptomyces albus J1074]
 gi|291357110|gb|EFE84012.1| translation factor SUA5 [Streptomyces albus J1074]
          Length = 215

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+TVYG+  D+ +P A+  L   K R    P    +   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGVGADAFSPEAVGDLLTAKGRGRNMPSPVLIGSPNT 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +          +  L   FWPG LTLV     +   +   T    T   R+P       +
Sbjct: 75  LHGLVTDFSETAWDLVDAFWPGALTLVARHQPSLQWNLGDT--RGTVAVRMPLHPVAIEL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            T   P+A+ SAN +G  S         + +   I + +DGG +   + S+IV+V     
Sbjct: 133 LTETGPMAVSSANLTGHPSPETC-EAARNMLGDAISVYLDGGPTPGIVPSSIVDVTGSVP 191

Query: 189 VRILRPGGLEIETLKRAI 206
           V +LR G ++ + L++ +
Sbjct: 192 V-LLRAGAIDADELRKVV 208


>gi|282861119|ref|ZP_06270184.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE]
 gi|282563777|gb|EFB69314.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE]
          Length = 215

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +   I  L   K R    P    
Sbjct: 9   DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEGIADLLAAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEEAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+ + SAN +G  S           +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMGVSSANLTGHPSPETC-DAAQDMLGDSVSVYLDGGPTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  +  V +LR G L +E L++ +
Sbjct: 186 VTGKVPV-LLRAGALSVEELRKVV 208


>gi|302542526|ref|ZP_07294868.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460144|gb|EFL23237.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 215

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 8/205 (3%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD    LR+A   +  G  + +PT+TVYG+  D+ +  A+  L E K R    P    
Sbjct: 9   DATDRKTGLREAASAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLEAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           V   + +          +  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  VGSPNTLHGLVTDFSEQAWELVDAFWPGALTLVARHQPSLTWDLGET--RGTVAVRMPLH 126

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +L+  +G P+A+ SAN +G  S           +   + + +DGG +   + S+IV
Sbjct: 127 PVAIELLNDFG-PMAVSSANLTGHPSP-QDCDAAQDMLGDSVSVYLDGGPTPAAVPSSIV 184

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206
           +V  +  V +LR G L  E L+  +
Sbjct: 185 DVTGKVPV-LLRAGALSAEQLREVV 208


>gi|298374321|ref|ZP_06984279.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19]
 gi|298268689|gb|EFI10344.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19]
          Length = 200

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +   + K  + L  G  +  PT+TVY +  D+ N  A+ ++ ++K   P  + L     D
Sbjct: 11  NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMKGVNPQKSNLSIICYD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +S + ++A V   +  L K   PGP T +L   S     P    N K    RVP    T+
Sbjct: 71  LSNLSEYAKVSNAAFKLMKKHLPGPFTFILPTSSEL---PKIYKNRKEVGIRVPDNNITR 127

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L+++ G+P+   S     + I  T    ++      ++ ++IDGG   +   ST+++  
Sbjct: 128 TLVQSLGNPILTMSIRDEDEVIEYTTDPELIHEKYEHQVDIVIDGGFGGL-EASTVIDCT 186

Query: 185 CEKKVRILRPGGLEI 199
            +    I+R G  E+
Sbjct: 187 TDN-FEIVRQGKGEL 200


>gi|256838758|ref|ZP_05544268.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262382729|ref|ZP_06075866.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B]
 gi|301307849|ref|ZP_07213805.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3]
 gi|256739677|gb|EEU53001.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262295607|gb|EEY83538.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B]
 gi|300834192|gb|EFK64806.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3]
          Length = 200

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +   + K  + L  G  +  PT+TVY +  D+ N  A+ ++ ++K   P  + L     D
Sbjct: 11  NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMKGVNPQKSNLSIICYD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +S + ++A V   +  L K   PGP T +L   S     P    N K    RVP    T+
Sbjct: 71  LSNLSEYAKVSNAAFKLMKKHLPGPFTFILPTSSEL---PKIYKNRKEVGIRVPDNNITR 127

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L+++ G+P+   S     + I  T    ++      ++ ++IDGG   +   ST+++  
Sbjct: 128 TLVQSLGNPILTMSIRDEDEVIEYTTDPELIHEKYEHQVDIVIDGGFGGL-EASTVIDCT 186

Query: 185 CEKKVRILRPGGLEI 199
            +    I+R G  E+
Sbjct: 187 TDN-FEIVRQGKGEL 200


>gi|294631402|ref|ZP_06709962.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14]
 gi|292834735|gb|EFF93084.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14]
          Length = 215

 Score =  182 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L + K R    P    
Sbjct: 9   DATDRATGLREAASAVRRGELVVLPTDTVYGIGADAFSGDAVADLLDAKGRGRAMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEQAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  +           +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPAPETC-DAAQEMLGDSVSVYLDGGPTPGNVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  E  V +LR G L  E L++ +
Sbjct: 186 VTREVPV-LLREGALSPEELRKVV 208


>gi|192361717|ref|YP_001982272.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107]
 gi|190687882|gb|ACE85560.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107]
          Length = 205

 Score =  182 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  +  PT++ Y L     +  A+ R+  +++    +       D+S
Sbjct: 14  QRLIQQAVDIIRKGGLVVYPTDSAYALGCHIGDKDALERIRTLRQLDKYHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V+  +  L K   PG  T +L+  +      L     KT   RVP       L
Sbjct: 74  ELATYARVNNQAFRLLKNHTPGAYTFILEATADVP-RRLMHPKRKTIGLRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G+       + +  ++  ++ L+IDGG   +   +T+V++  + 
Sbjct: 133 LEELGEPLMTSSLLLPGEEYPMTDPYDIRETLEHQVDLVIDGGYCGL-EPTTVVDLTGDA 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-ELIRQG 198


>gi|313497709|gb|ADR59075.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida BIRD-1]
          Length = 209

 Score =  182 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E +  G  +  PT++ Y L     + +AI R+  ++     
Sbjct: 3   QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSAYALGCQIGDKSAIERVRRLRGLDKT 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD  +  L K   PGP T +L+         L     +T   
Sbjct: 63  HNFTLMCCDMSQLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHDKRRTIGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T  L+   G PL   S    G        + +   +   + L+IDGG   +  
Sbjct: 122 RVPDHAITLALLAELGEPLMSVSLILPGDSEPMTDPYEIRERLEHHVDLVIDGGFGDL-K 180

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            STI+++  ++   ++R G 
Sbjct: 181 ASTIIDLSGDEP-ELIREGC 199


>gi|134102725|ref|YP_001108386.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338]
 gi|291007818|ref|ZP_06565791.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338]
 gi|133915348|emb|CAM05461.1| SUA5/YciO/YrdC/YwlC [Saccharopolyspora erythraea NRRL 2338]
          Length = 216

 Score =  182 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 5/191 (2%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80
           G  + +PT+TVYG+  D+ +  A+  L   K R    P+   V   S V     SV   +
Sbjct: 27  GGLVVLPTDTVYGIGADAFDSNAVASLLAAKGRGPDMPVPVLVGSWSTVDGLVMSVPQQA 86

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             L + FWPG L++VL    +      +T    T   R+P       +     P+A+ SA
Sbjct: 87  RALIEAFWPGGLSIVLPQAPSLSWDLGNT--RGTVNLRMPLHPVALDLLREVGPMAVSSA 144

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           NR+G    +         +   + + +DGG S   + STIV++   +  R+LR G + ++
Sbjct: 145 NRTGHPPASTATEA-REQLGDSVSVYLDGGPSGEPVASTIVDLTQAQP-RVLREGAVGLD 202

Query: 201 TLKRAISVELE 211
            L   + V+ E
Sbjct: 203 DLADVLGVDAE 213


>gi|296119523|ref|ZP_06838081.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967406|gb|EFG80673.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 235

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 9/213 (4%)

Query: 2   QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I   +D       +  A +   +G  I  PT+TVYGL  D+ +  A+  L   K R   
Sbjct: 4   KIYDCSDEQQRAEGIALATKAAKSGRLIVTPTDTVYGLGCDAFDNDAVASLLAAKHRGPD 63

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   +      K    S       L + FWPG L++V+    +   +   T    T  
Sbjct: 64  MPVPVLIGSWDTAKGLVQSFTDQMKLLTEAFWPGGLSIVVPQAPSLPWNLGDT--RGTVM 121

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SG    T         + K + + +DGG + IG 
Sbjct: 122 LRMPLHPIAIELLREVGPMAVSSANISGHAPATTAIAA-KQQLGKAVAVYLDGGEAPIGE 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209
            STI+++       +LR G L  E +   I V+
Sbjct: 181 PSTIIDLSGPWPY-LLREGALSAERISEVIGVD 212


>gi|309789073|ref|ZP_07683668.1| yrdC domain protein [Shigella dysenteriae 1617]
 gi|308923344|gb|EFP68856.1| yrdC domain protein [Shigella dysenteriae 1617]
          Length = 206

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAVERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 192 PV-VVREG 198


>gi|54023023|ref|YP_117265.1| hypothetical protein nfa10560 [Nocardia farcinica IFM 10152]
 gi|54014531|dbj|BAD55901.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 234

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 5/213 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           + +  L  A   L +G  + +PT+T+YGLA D+ + TA+  L   K+R    P+   V  
Sbjct: 25  SRAAGLTAATSALKSGRLVVMPTDTLYGLAADAFDSTAVAELLAAKRRGRDMPVPVLVGS 84

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            + +     SV P +  L + FWPG L+LV+    +  +         T   R+P     
Sbjct: 85  WNTIDGLVFSVRPQARDLIRAFWPGGLSLVVQQAPS--LAWDLGDTRGTVMLRMPLHPVA 142

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             +     PLA+ SAN SGQ   T         +   + + +DGG +   + STIV++  
Sbjct: 143 LDLLRDVGPLAVSSANVSGQPPATTAAEA-REQLGSLVSVYLDGGPAAHAVASTIVDLTA 201

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
           ++  RILR G +    +   + +  +      +
Sbjct: 202 DRP-RILREGAVSAAEIAEVLGMSPDELTGTAA 233


>gi|227538437|ref|ZP_03968486.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241719|gb|EEI91734.1| RNA binding protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 206

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 8/198 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +  A+++  + L  G  I  PT+TVYG+  D  N  AI R+ EI+        L     D
Sbjct: 11  NEKAIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGLKVDKANLSFICYD 70

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           ++ + ++    D     + K   PGP T + +  ++  +  L ++  KT   RVP     
Sbjct: 71  LTDISQYTKPFDTSVFRVLKKALPGPFTFIFN--ASGQVPKLLSSKKKTVGIRVPDNHIV 128

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++++   G+P+   S      I   +    ++       + L+IDGG     + ST+V++
Sbjct: 129 REIVRVLGNPIVTTSIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGD-NVASTVVDL 187

Query: 184 QCEKKVRILRPGGLEIET 201
                  I+R G  ++E 
Sbjct: 188 TNGD-FEIVREGKGDLEQ 204


>gi|29829452|ref|NP_824086.1| hypothetical protein SAV_2910 [Streptomyces avermitilis MA-4680]
 gi|29606560|dbj|BAC70621.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 215

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L + K R    P    
Sbjct: 9   DATDRATGLREAASAVRRGELVVLPTDTVYGVGADAFSSEAVADLLQSKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +         ++  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + +   P+A+ SAN +G  +  +        +   I + +DGG +   + S+IV+
Sbjct: 127 PVALELLSEVGPMAVSSANLTGHPAPEDC-DAAQEMLGDSISVYLDGGPTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  +  + +LR G L  E L++ +
Sbjct: 186 VSGKIPL-LLREGALSAEELRKVV 208


>gi|302521937|ref|ZP_07274279.1| translation factor SUA5 [Streptomyces sp. SPB78]
 gi|333024403|ref|ZP_08452467.1| hypothetical protein STTU_1907 [Streptomyces sp. Tu6071]
 gi|302430832|gb|EFL02648.1| translation factor SUA5 [Streptomyces sp. SPB78]
 gi|332744255|gb|EGJ74696.1| hypothetical protein STTU_1907 [Streptomyces sp. Tu6071]
          Length = 215

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L   K R    P    
Sbjct: 9   DATDRATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLAAKGRGRNMPSPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +  +         T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSETAWDLVDAFWPGGLTLVARHQPS--LAWDLGDTRGTVAIRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ S N +G  S           +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEFGPMAVSSGNLTGHPSPETC-DAAQEMLGDSVSVYLDGGPTSGNVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  E  V +LR G ++ E L++ +
Sbjct: 186 VSGEVPV-LLRAGVIDAEELRKVV 208


>gi|326776591|ref|ZP_08235856.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656924|gb|EGE41770.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 215

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+    A+  L + K R    P    
Sbjct: 9   DATDRATGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEEAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAIRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  S  +        +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPEDCDAAQG-MLGDSVSVYLDGGPTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     V +LR G L  E L++ +
Sbjct: 186 VTGATPV-LLRAGALSAEELRKVV 208


>gi|82776624|ref|YP_402973.1| hypothetical protein SDY_1335 [Shigella dysenteriae Sd197]
 gi|81240772|gb|ABB61482.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 218

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 26  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAVERICRIRQLPDGHNFTLMCRDLS 85

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 86  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 144

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 145 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 203

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 204 PV-VVREG 210


>gi|320154891|ref|YP_004187270.1| YrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
 gi|319930203|gb|ADV85067.1| yrdC/Sua5 family protein, required for threonylcarbamoyladenosine
           (t(6)A) formation in tRNA [Vibrio vulnificus MO6-24/O]
          Length = 185

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++  + L  G  +A PTE V+GL  D  N  AI RL  IK+RP+   LI   +D   ++
Sbjct: 4   LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 63

Query: 72  KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  L +  L ++F  WPGP T V+   ++     L T   +T   RV      +KL
Sbjct: 64  PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              YG PL   SAN SGQ     V+ +    +  +I +I+ G I +    S I + + E+
Sbjct: 122 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 180

Query: 188 KVR 190
            +R
Sbjct: 181 LLR 183


>gi|295133073|ref|YP_003583749.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87]
 gi|294981088|gb|ADF51553.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87]
          Length = 206

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 17/209 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---R 54
           +I+ I + N     + K  + L  G  +  PT+TVYGL  D  N +A+ ++ +IK     
Sbjct: 3   EIIRIYNENPNPREITKVVKTLRNGGLVIYPTDTVYGLGCDITNNSALEKIAQIKGVKLE 62

Query: 55  PAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
            A    ICH  D+S +  +   +D  +  + K   PGP T +L   +     P      K
Sbjct: 63  KANFSFICH--DLSNLSDYVKQIDTSTFKILKRCLPGPYTFILPGNNNL---PTVFKKKK 117

Query: 114 TACFRVPC-GFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGI 171
           T   RVP     + ++   G+P+   S     + I  T    ++       + ++IDGG 
Sbjct: 118 TVGIRVPDNNICRAIVAELGNPIVSTSIRDEDEVIEYTTDPELIQEKWDNLVDIVIDGGY 177

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIE 200
               + ST++++  ++   ++R G   +E
Sbjct: 178 GD-NIPSTVIDLTTDQP-EVVREGKGSLE 204


>gi|27364487|ref|NP_760015.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
 gi|81448837|sp|Q8DDD6|RIMN_VIBVU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288261|sp|Q7MGL3|RIMN_VIBVY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|27360606|gb|AAO09542.1| Sua5 YciO YrdC YwlC family protein [Vibrio vulnificus CMCP6]
          Length = 186

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++  + L  G  +A PTE V+GL  D  N  AI RL  IK+RP+   LI   +D   ++
Sbjct: 5   LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 64

Query: 72  KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  L +  L ++F  WPGP T V+   ++     L T   +T   RV      +KL
Sbjct: 65  PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              YG PL   SAN SGQ     V+ +    +  +I +I+ G I +    S I + + E+
Sbjct: 123 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 181

Query: 188 KVR 190
            +R
Sbjct: 182 LLR 184


>gi|37681401|ref|NP_936010.1| putative translation factor [Vibrio vulnificus YJ016]
 gi|37200153|dbj|BAC95981.1| putative translation factor [Vibrio vulnificus YJ016]
          Length = 237

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++  + L  G  +A PTE V+GL  D  N  AI RL  IK+RP+   LI   +D   ++
Sbjct: 56  LQQVVKALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQ 115

Query: 72  KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  L +  L ++F  WPGP T V+   ++     L T   +T   RV      +KL
Sbjct: 116 PYLDLTSLSAEQLQRVFATWPGPYTWVMP--ASARASALVTGYRQTVAVRVSDHPLVQKL 173

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              YG PL   SAN SGQ     V+ +    +  +I +I+ G I +    S I + + E+
Sbjct: 174 CSEYGKPLTSTSANLSGQTECKTVEQV-QDQLGSQISVILFGEIGERHRPSEIRDARTEQ 232

Query: 188 KVR 190
            +R
Sbjct: 233 LLR 235


>gi|319948466|ref|ZP_08022602.1| hypothetical protein ES5_03818 [Dietzia cinnamea P4]
 gi|319437886|gb|EFV92870.1| hypothetical protein ES5_03818 [Dietzia cinnamea P4]
          Length = 217

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 5/200 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   L AG  +  PT+T+YG+A D+ +P A+  L   K R    P+   V     +
Sbjct: 16  GLSSAAGALRAGRLVVTPTDTLYGIAADAFDPDAVNLLLSAKHRGPDMPVPVLVGSWETI 75

Query: 71  KKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
                  P  +  L + FWPG L+L++    + + +   T    T   R+P       + 
Sbjct: 76  DGLVVSTPAPARDLIRAFWPGGLSLIVHQAPSLNWNLGHT--RGTVMLRMPLHPVAIELL 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA+ SAN SGQ   T V       +   + + +DGG   IG  STIV++      
Sbjct: 134 REVGPLAVSSANVSGQPPATTVAQA-REQLGDSVAVYLDGGPCAIGAPSTIVDITGAAP- 191

Query: 190 RILRPGGLEIETLKRAISVE 209
           RI+R G +  E +   + ++
Sbjct: 192 RIVREGAVTAERVGEVLGID 211


>gi|149278400|ref|ZP_01884537.1| translation factor [Pedobacter sp. BAL39]
 gi|149230770|gb|EDM36152.1| translation factor [Pedobacter sp. BAL39]
          Length = 250

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 8/198 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +  A+ +A E L  G  I  PT+TVYGL  D  N  AI R+  I+  +P         SD
Sbjct: 55  NPKAIEQAVEVLKKGGIIIYPTDTVYGLGCDITNQKAIERICRIRGIKPEKANFSFVCSD 114

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  +  +   +D  +  + K   PGP T +L+  +  ++  L ++N KT   RVP     
Sbjct: 115 LRHISDYIKPIDTTTFRVLKKALPGPFTFILN--ANNNVPKLLSSNKKTVGIRVPDNDIA 172

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++++   G+P+   S     + I  +    ++       + L+IDGG       ST+V+ 
Sbjct: 173 REIVRLLGNPILSTSIKDDDEVIEYSTDPELIHEKYEDRVDLVIDGGYGD-NEPSTVVDC 231

Query: 184 QCEKKVRILRPGGLEIET 201
               +  ++R G   ++ 
Sbjct: 232 TS-GEFEVIREGKGILDD 248


>gi|148263967|ref|YP_001230673.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter uraniireducens Rf4]
 gi|146397467|gb|ABQ26100.1| translation factor SUA5 [Geobacter uraniireducens Rf4]
          Length = 202

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E L+ G  +A PT+T YG+     N   I R+Y IK+R    P     +D+S
Sbjct: 12  PRLVAQVVEVLNKGGVVAYPTDTTYGIGCSIFNKRGIERIYSIKQREKKKPFSFICADLS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + ++A V   +  L K   PGP T VLD  +T+ +  L     KT   R+P       +
Sbjct: 72  DIARYAKVSNYAFKLMKRLLPGPYTFVLD--ATSVVPDLLMTKQKTVGIRIPANKICLAV 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  GHP+   SAN SG+         + S + K I L IDGGI    + S++V++  + 
Sbjct: 130 VKQLGHPIVTTSANLSGEE-PIGDPFQVESYLGKLIDLTIDGGILSADV-SSVVSLIGDV 187

Query: 188 KVRILRPG 195
              +LR G
Sbjct: 188 P-EVLRKG 194


>gi|196232003|ref|ZP_03130859.1| Sua5/YciO/YrdC/YwlC family protein [Chthoniobacter flavus Ellin428]
 gi|196224125|gb|EDY18639.1| Sua5/YciO/YrdC/YwlC family protein [Chthoniobacter flavus Ellin428]
          Length = 203

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 71/178 (39%), Positives = 97/178 (54%), Gaps = 8/178 (4%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G P+ +PTETVYGLA D+  P A+  ++E K+RP  +PLI H+     + +  ++   S
Sbjct: 27  DGQPVGLPTETVYGLAADALRPEAVAEVFEAKERPFFDPLIVHLPSRDWLDRVTNIPAES 86

Query: 81  L----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPL 135
                 L   FWPGPLTLVL       +  + T+ L T   R+      + ++E YGHPL
Sbjct: 87  RAMVEALITKFWPGPLTLVLPRQ--LVVPDIVTSGLDTVAVRMSAHPVFRAVVEHYGHPL 144

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           A PSANR G IS T   H+  S +   IPLI+DGG ++ G+ESTIV V         R
Sbjct: 145 AAPSANRFGHISPTTASHV-RSELHGRIPLIVDGGPTQHGVESTIVKVTVANCACCAR 201


>gi|320008547|gb|ADW03397.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 215

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +   +  L + K R    P    
Sbjct: 9   DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFSSEGVADLLDAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  S           +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPETC-DAAQEMLGDSVSVYLDGGSTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     + +LR G + +E L++ +
Sbjct: 186 VTGRIPL-LLRAGAIPVEELRKVV 208


>gi|288922984|ref|ZP_06417141.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EUN1f]
 gi|288345660|gb|EFC80032.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EUN1f]
          Length = 217

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 5/189 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           + +G  + +PT+T+YG+  D+ +P A+  L   K R    P+   V     +      V 
Sbjct: 24  VRSGRLVVLPTDTLYGIGADAFDPVAVGCLLGAKGRGRDMPVPVLVGSWRTLDGLVEQVT 83

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
                L + FWPG LTLV++   +  +         T   R+P       + T   P+A+
Sbjct: 84  DQVRDLVRAFWPGGLTLVVNHAPS--LSWDLGDARGTVAVRMPLHPVAIELLTRTGPMAV 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN SG+   T  +  L + +   + + +DGG + +G  STI++      V ++R G +
Sbjct: 142 SSANISGRPPATTAQDAL-AQLGGAVDVYLDGGRTPVGKASTILDCTGTVPV-VVREGAV 199

Query: 198 EIETLKRAI 206
           +IE L+  +
Sbjct: 200 DIEALRSVV 208


>gi|318060716|ref|ZP_07979439.1| hypothetical protein SSA3_22428 [Streptomyces sp. SA3_actG]
 gi|318075507|ref|ZP_07982839.1| hypothetical protein SSA3_01992 [Streptomyces sp. SA3_actF]
          Length = 215

 Score =  181 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L   K R    P    
Sbjct: 9   DATDRATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLAAKGRGRNMPSPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +  +         T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSETAWDLVDAFWPGGLTLVARHQPS--LAWDLGDTRGTVAIRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ S N +G  +           +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEFGPMAVSSGNLTGHPAPETC-DAAQEMLGDSVSVYLDGGPTSGNVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  E  V +LR G ++ E L++ +
Sbjct: 186 VSGEVPV-LLRAGVIDAEELRKVV 208


>gi|150009964|ref|YP_001304707.1| hypothetical protein BDI_3382 [Parabacteroides distasonis ATCC
           8503]
 gi|255012773|ref|ZP_05284899.1| hypothetical protein B2_02632 [Bacteroides sp. 2_1_7]
 gi|149938388|gb|ABR45085.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 200

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +   + K  + L  G  +  PT+TVY +  D+ N  A+ ++ ++K   P  + L     D
Sbjct: 11  NQKEIDKVVKVLQDGGLVVYPTDTVYAIGCDALNVRAVEKICQMKGVNPQKSNLSIICYD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +S + ++A V   +  L K   PGP T +L   S     P    N K    RVP    T+
Sbjct: 71  LSNLSEYAKVSNAAFKLMKKHLPGPFTFILPTSSEL---PKIYKNRKEVGIRVPDNNITR 127

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L+++ G+P+   S     + I  T    ++      ++ ++IDGG   +   ST+++  
Sbjct: 128 TLVQSLGNPILTMSIRDKDEVIEYTTDPELIHEKYEHQVDIVIDGGFGGL-EASTVIDCT 186

Query: 185 CEKKVRILRPGGLEI 199
            +    I+R G  E+
Sbjct: 187 TDN-FEIVRQGKGEL 200


>gi|51246039|ref|YP_065923.1| hypothetical protein DP2187 [Desulfotalea psychrophila LSv54]
 gi|50877076|emb|CAG36916.1| hypothetical protein DP2187 [Desulfotalea psychrophila LSv54]
          Length = 218

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 99/202 (49%), Gaps = 6/202 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +++ +A + +  G  +A PTET YGLAVD  N  AI RLY +K R    PL+  V++ +
Sbjct: 19  KSSILQAVDVIRRGGIVAFPTETSYGLAVDPYNVEAIERLYSLKGRHRSKPLLLLVANHA 78

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVPCGFTKK 126
            +     ++ PL   L   FWPGPLTL+     T  I  + T   KT    R P    + 
Sbjct: 79  QLLDCVCAIPPLYKPLIARFWPGPLTLIFQAKET--IPAILTGGSKTIAIRRSPHPVAQF 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +E+ G PL   SAN S +      +  L       +  IID G   +   STI+ V+ E
Sbjct: 137 FVESAGIPLTATSANFSQKKPALTAQDCL-HMFGDLVDYIIDDGQRGLNGFSTILAVKKE 195

Query: 187 KKVRILRPGGLEIETLKRAISV 208
             + ++R G L ++T+ R + +
Sbjct: 196 G-LIVIREGELSLKTIARELDI 216


>gi|239944289|ref|ZP_04696226.1| hypothetical protein SrosN15_25025 [Streptomyces roseosporus NRRL
           15998]
 gi|239990744|ref|ZP_04711408.1| hypothetical protein SrosN1_25792 [Streptomyces roseosporus NRRL
           11379]
 gi|291447757|ref|ZP_06587147.1| translation factor SUA5 [Streptomyces roseosporus NRRL 15998]
 gi|291350704|gb|EFE77608.1| translation factor SUA5 [Streptomyces roseosporus NRRL 15998]
          Length = 215

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+    A+  L + K R    P    
Sbjct: 9   DATDRTTGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEEAWELVDAFWPGALTLVARHQPSLQWDLGDT--RGTVAIRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  +  +        +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPAPEDCDAAQG-MLGDSVSVYLDGGPTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     V +LR G L  E L++ +
Sbjct: 186 VTGATPV-LLRAGALSAEELRKVV 208


>gi|332827684|gb|EGK00423.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 202

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 8/195 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSD 66
           +   + K  + L  G  I  PT+TVY +  D+ N  A+ ++  +K   P  + L     D
Sbjct: 11  NPKEIDKIIKVLQDGGLIVYPTDTVYAIGCDALNVRAVEKICRMKDINPEKSNLSIICYD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +S + ++A VD  +  L K   PGP T +L+  S+    P    N KT   R+P     +
Sbjct: 71  LSNISEYARVDNNTFKLMKKNLPGPFTFILNTTSSL---PKIYKNKKTVGIRIPDNNIIR 127

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +L+ T G+P+   S     + I  T    ++       + ++IDGG   I   STIV+  
Sbjct: 128 ELVHTLGNPIMTTSVKDDDEVIEYTTDPELIYERYQDLVDIVIDGGYGGI-EASTIVDCT 186

Query: 185 CEKKVRILRPGGLEI 199
            ++   I+R G  E+
Sbjct: 187 GDEP-EIMRQGKGEL 200


>gi|302414222|ref|XP_003004943.1| SUA5 [Verticillium albo-atrum VaMs.102]
 gi|261356012|gb|EEY18440.1| SUA5 [Verticillium albo-atrum VaMs.102]
          Length = 414

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 23/203 (11%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-------- 78
           +P ETVYGL  D+    A++ +Y  K RP+ NPLI HVSD++M+++  +  P        
Sbjct: 191 LPDETVYGLGADATRSAAVKGIYAAKGRPSDNPLIIHVSDLTMLRRFLAPPPPSDTPDAV 250

Query: 79  ------------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
                       +   L + FWPGPLT++L L S + + P  TA L T   R+P      
Sbjct: 251 VTAAAAADPIPAIYKPLLERFWPGPLTILLPLPSPSPLAPEVTAGLPTFAVRMPASPLAL 310

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI     PLA PSAN S + S T  +H+L   +   I LI+D G   +G+EST+V+  C
Sbjct: 311 SLIALADTPLAGPSANASTKPSPTAARHVL-DDLAGRIELILDAGPCDVGVESTVVDGLC 369

Query: 186 EKKVRILRPGGLEIETLKRAISV 208
           +  V ILRPGG+ ++ L+     
Sbjct: 370 DPPV-ILRPGGIALDRLRACPGW 391


>gi|254387521|ref|ZP_05002760.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064]
 gi|294815092|ref|ZP_06773735.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064]
 gi|326443454|ref|ZP_08218188.1| hypothetical protein SclaA2_20413 [Streptomyces clavuligerus ATCC
           27064]
 gi|197701247|gb|EDY47059.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064]
 gi|294327691|gb|EFG09334.1| Sua5/YciO/YrdC/YwlC [Streptomyces clavuligerus ATCC 27064]
          Length = 215

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 5/199 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L E K R    P    +   +
Sbjct: 14  ATGLREATSAVRRGELVVLPTDTVYGIGADAFSSEAVSDLLEAKGRGRNMPTPVLIGSPN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +          +  L   FWPG LTLV     +       T    T   R+P       
Sbjct: 74  TLHGLVTDFSEQAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLHPVAIE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + T   P+A+ SAN +G  +  +        +   + + +DGG +   + S+IV+V    
Sbjct: 132 LLTETGPMAVSSANLTGHRAPEDC-DAAQEMLGDSVSVYLDGGPTPGIVPSSIVDVTGRV 190

Query: 188 KVRILRPGGLEIETLKRAI 206
            V +LR G L+ E L++ +
Sbjct: 191 PV-LLRAGALDAEELRKVV 208


>gi|260854965|ref|YP_003228856.1| hypothetical protein ECO26_1832 [Escherichia coli O26:H11 str.
           11368]
 gi|257753614|dbj|BAI25116.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|323153301|gb|EFZ39559.1| yrdC domain protein [Escherichia coli EPECa14]
          Length = 206

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  +K
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDK 191

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 192 PV-VVREG 198


>gi|77457715|ref|YP_347220.1| translation factor SUA5 [Pseudomonas fluorescens Pf0-1]
 gi|77381718|gb|ABA73231.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 209

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E +  G  +  PT++ Y +     +  AI R+  +++    
Sbjct: 3   QFFQIHPENPQARLIKQAVEIIRKGGVVVYPTDSSYAIGCQIGDKNAIERVRRLRQLDEK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +      SD+S +  +A +D  +  + K   PGP T +L+         L     +T   
Sbjct: 63  HNFALICSDLSQLGNYAKIDTATFRILKAHLPGPYTFILNATREVP-RLLLHPKKRTIGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+   G PL   +    G     +  + +   +  ++ LIIDGG   I  
Sbjct: 122 RVPSHPIALALLAELGEPLMSVTLIMPGDEDPLSDPYEMRQVLEHQVDLIIDGGSGGI-K 180

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            ST++++  +    ++R G 
Sbjct: 181 ASTVIDLTGDDP-EVIRVGC 199


>gi|284921148|emb|CBG34214.1| conserved hypothetical protein [Escherichia coli 042]
 gi|323964604|gb|EGB60077.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M863]
 gi|323977102|gb|EGB72189.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TW10509]
 gi|327253957|gb|EGE65586.1| yrdC domain protein [Escherichia coli STEC_7v]
          Length = 206

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|320353909|ref|YP_004195248.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
 gi|320122411|gb|ADW17957.1| translation factor SUA5 [Desulfobulbus propionicus DSM 2032]
          Length = 211

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 104/206 (50%), Gaps = 7/206 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +++T  N L +A   L +G  +A PTET YGLAVD  N  A+ RL++IK+R    P++  
Sbjct: 5   LAVTPEN-LDRAAAVLLSGGVVAFPTETYYGLAVDPFNQKALERLFQIKRRARELPILVL 63

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PC 121
           VS    V++     P   + L + FWPGPLTLV    S+  +    T N  T   R  P 
Sbjct: 64  VSSHEQVRRLVEEIPAIYNCLIEAFWPGPLTLVYPARSS--VPNRLTGNTGTVGIRHSPN 121

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI+ +G P+   SANRSG  +      +       E+ LI+DGG +  G  ST+V
Sbjct: 122 ETANRLIDVFGGPITATSANRSGSPAAVTADEV-ERIFDTEVDLILDGGHTPGGSGSTLV 180

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS 207
            +     +  LR G L   T++  ++
Sbjct: 181 GLHGA-TLTCLREGKLAFATVRSRVA 205


>gi|290957363|ref|YP_003488545.1| hypothetical protein SCAB_28871 [Streptomyces scabiei 87.22]
 gi|260646889|emb|CBG69986.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 215

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 5/199 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A   +  G  + +PT+TVYG+  D+    A+  L E K R    P    +   +
Sbjct: 14  ATGLREAASAVRRGELVVLPTDTVYGIGADAFTAEAVADLLEAKGRGRSMPTPVLIGSPN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +         ++  L   FWPG LTLV     +       T    T   R+P       
Sbjct: 74  TLHGLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAVRMPLHPVAIE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + T   P+A+ SAN +G  +  N      + +   + + +DGG +     S+IV+V  + 
Sbjct: 132 LLTEVGPMAVSSANLTGHPAPENC-DAAEAMLGDSVSVYLDGGPTPGIEPSSIVDVTGKV 190

Query: 188 KVRILRPGGLEIETLKRAI 206
            V +LR G L  E L++ +
Sbjct: 191 PV-LLRAGALSAEELRKVV 208


>gi|124486054|ref|YP_001030670.1| translation factor SUA5 [Methanocorpusculum labreanum Z]
 gi|124363595|gb|ABN07403.1| translation factor SUA5 [Methanocorpusculum labreanum Z]
          Length = 198

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 102/204 (50%), Gaps = 13/204 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +++ T+ + + KA   L     +  PTETVYGL  D+ + TA+ ++YE K+RP   P+  
Sbjct: 1   MITPTEESRIEKAVRVLSRDGLVVYPTETVYGLGADALSDTAVIKVYEAKQRPLGKPISV 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            VSDI M+   A V P +      F PGP+T+VL + +   +    +    T   R P  
Sbjct: 61  AVSDIEMIYGIADVSPFAERFISKFLPGPVTIVLPVKNC--LPGDLSGGTGTIGIRYPDH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +LI  +  P+   SAN SG+IS  +V  +           ++DGG+   G+ ST+V
Sbjct: 119 TLALELISMFDCPITATSANISGEISPVSVDQV-----NVPHDYLLDGGVLP-GIPSTVV 172

Query: 182 NVQCEKKVRILRPGGLEIETLKRA 205
           N++      I RPG + ++ + R 
Sbjct: 173 NLETRN---IERPGAM-LDDIARF 192


>gi|182435967|ref|YP_001823686.1| hypothetical protein SGR_2174 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178464483|dbj|BAG19003.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 215

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+    A+  L + K R    P    
Sbjct: 9   DATDRATGLREAASAVRRGELVVLPTDTVYGIGADAFTSEAVADLLDAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +       T    T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEEAWELVDAFWPGALTLVAKHQPSLQWDLGDT--RGTVAIRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN +G  S  +        +   + + +DGG +   + S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLTGHPSPEDCDAAQG-MLGDSVSVYLDGGPTPGIVPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V     V +LR G L  E L+  +
Sbjct: 186 VTGATPV-LLRAGALSAEELRTVV 208


>gi|295836496|ref|ZP_06823429.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. SPB74]
 gi|197699010|gb|EDY45943.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. SPB74]
          Length = 215

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 8/205 (3%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD +  LR+A   +  G  + +PT+TVYG+  D+ +  A+  L   K R    P    
Sbjct: 9   DATDRATGLREAAAAVRRGELVVLPTDTVYGIGADAFSAEAVGDLLTAKGRGRNMPSPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           +   + +          +  L   FWPG LTLV     +  +         T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSETAWDLVDAFWPGGLTLVARHQPS--LAWDLGDTRGTVAIRMPLH 126

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               +L+  +G P+A+ S N +G  S           +   + + +DGG +   + S+IV
Sbjct: 127 PVAIELLSDFG-PMAVSSGNLTGHPSPETC-DAAQEMLGDSVSVYLDGGPTSGNVPSSIV 184

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206
           +V  E  V +LR G ++ E L++ +
Sbjct: 185 DVSGEVPV-LLRAGVIDTEELRKVV 208


>gi|300769987|ref|ZP_07079866.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762463|gb|EFK59280.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 206

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 8/198 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +  A+++  + L  G  I  PT+TVYG+  D  N  AI R+ EI+        L     D
Sbjct: 11  NEKAIQQVVDVLKRGGVIIYPTDTVYGIGCDITNHKAIERVCEIRGMKVDKANLSFICYD 70

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           ++ + ++    D     + K   PGP T + +  ++  +  L ++  KT   RVP     
Sbjct: 71  LTDISQYTKPFDTSVFRVLKKALPGPFTFIFN--ASGQVPKLLSSKKKTVGIRVPDNHIV 128

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++++   G+P+   S      I   +    ++       + L+IDGG     + ST+V++
Sbjct: 129 REIVRVLGNPIVTASIRDEDDILEYSTDPELIHEKYENMVDLVIDGGYGD-NVASTVVDL 187

Query: 184 QCEKKVRILRPGGLEIET 201
                  I+R G  ++E 
Sbjct: 188 TGGD-FEIVREGKGDLEQ 204


>gi|254786472|ref|YP_003073901.1| Sua5/YciO/YrdC/YwlC family protein [Teredinibacter turnerae T7901]
 gi|237685207|gb|ACR12471.1| Sua5/YciO/YrdC/YwlC family protein [Teredinibacter turnerae T7901]
          Length = 224

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 10/208 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  SI   N     + +A + L  G  I  PT++ Y L     +  A+ R+  +++    
Sbjct: 21  QFFSIHPENPQARLISQAVDILRRGGLIVYPTDSAYALGCHIGDKLALDRIRALRQLDKH 80

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD  +  + K   PGP T +L+  S      L     KT   
Sbjct: 81  HNFTLMCRDLSELANYARVDNTAYRIIKSHTPGPFTFILNATSEVP-RRLQHPKRKTLGM 139

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+E  G PL   S    G        + +  ++  +  L+IDGG    GL
Sbjct: 140 RVPDNAIALALLEELGEPLMSSSLILPGDTLPLTDPYDIRDTLEHQCELVIDGGFC--GL 197

Query: 177 EST-IVNVQCEKKVRILRPGGLEIETLK 203
           E T ++++  ++  +++R G  +I   +
Sbjct: 198 EPTSVIDLTGDEP-QVMREGCGDISDFR 224


>gi|158312866|ref|YP_001505374.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec]
 gi|158108271|gb|ABW10468.1| Sua5/YciO/YrdC/YwlC family protein [Frankia sp. EAN1pec]
          Length = 216

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 9/219 (4%)

Query: 1   MQIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ+   +D       L  A + +  G  + +PT+T+YG+  D+ N  A+  L   K R  
Sbjct: 1   MQVFDCSDEGQRKAGLDAATDAVGRGKLVVLPTDTLYGIGADAFNRDAVTALLAAKGRGR 60

Query: 57  MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P+   V     +   A  V      L + FWPG LTLV++   +  +         T 
Sbjct: 61  NMPVPVLVGSWRTLDGLAEQVTGHIRDLVRAFWPGGLTLVVNHAPS--LRWDLGDARGTV 118

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       +     P+A+ SAN SG+   T+    + + +     + +DGG + +G
Sbjct: 119 AVRMPLHPVAIELLGRTGPMAVSSANISGRPPATSAVDAV-AQLGGAAAVYLDGGTTPVG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
             STIV+        ++R G +++  L+  + +  E   
Sbjct: 178 TASTIVDCTGPVP-TVVREGAVDLAALRSVLPLVREPAA 215


>gi|261213222|ref|ZP_05927504.1| YrdC family protein [Vibrio sp. RC341]
 gi|260837496|gb|EEX64199.1| YrdC family protein [Vibrio sp. RC341]
          Length = 185

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 10/188 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A + L  G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   ++   ++
Sbjct: 4   LQQAVDVLQRGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQLR 63

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   D L+          WP PLT V+   ++ D          T   RV      ++L
Sbjct: 64  PYIDEDQLTEQQLLQVLASWPAPLTWVMP--ASVDTPSWVRGQFDTVAVRVSNHPLVQQL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN SGQ + T  + ++ + +  +I  +++G  S     S I + +   
Sbjct: 122 CLAFGKPLTSTSANLSGQPACTTRQEVV-AQLGNQIETVLEGETSGRCGPSEIRDARS-- 178

Query: 188 KVRILRPG 195
            +++LR G
Sbjct: 179 -LQVLRQG 185


>gi|224104509|ref|XP_002313460.1| predicted protein [Populus trichocarpa]
 gi|222849868|gb|EEE87415.1| predicted protein [Populus trichocarpa]
          Length = 232

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E L AG  IA+PT+T+YG A D+ +  A+ R+YE+K R   +PL   V D+S ++ 
Sbjct: 28  QEAIEALKAGKVIAVPTDTLYGFACDACSLEAVNRIYEMKGRKHTSPLAICVGDVSQIQH 87

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A  + L   L     PGP+T++L    ++ +       L +   RVP C F + +    
Sbjct: 88  FAVTEYLPHGLLDSLLPGPVTVILRRGESSALEKSLNPGLDSVGVRVPDCNFIRVVARGL 147

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           G  +A+ SAN SGQ S   +K     ++      + DGG+       STIV++    K +
Sbjct: 148 GKAVALTSANLSGQPSSLCIKD--FENLWNRCAYVYDGGVLPSNRAGSTIVDLTRPGKYK 205

Query: 191 ILRPGGLEIETLK 203
           ILRPG  + ETL 
Sbjct: 206 ILRPGSAKEETLA 218


>gi|89108113|ref|AP_001893.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|110641496|ref|YP_669226.1| hypothetical protein ECP_1314 [Escherichia coli 536]
 gi|157155810|ref|YP_001462564.1| hypothetical protein EcE24377A_1466 [Escherichia coli E24377A]
 gi|157160772|ref|YP_001458090.1| hypothetical protein EcHS_A1376 [Escherichia coli HS]
 gi|162135901|ref|NP_415783.6| predicted RNA binding protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|168758351|ref|ZP_02783358.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|170020369|ref|YP_001725323.1| hypothetical protein EcolC_2361 [Escherichia coli ATCC 8739]
 gi|170080944|ref|YP_001730264.1| hypothetical protein ECDH10B_1382 [Escherichia coli str. K-12
           substr. DH10B]
 gi|187733520|ref|YP_001880097.1| hypothetical protein SbBS512_E1491 [Shigella boydii CDC 3083-94]
 gi|188495376|ref|ZP_03002646.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638]
 gi|191166644|ref|ZP_03028472.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A]
 gi|193069999|ref|ZP_03050947.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019]
 gi|194435054|ref|ZP_03067293.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012]
 gi|195939200|ref|ZP_03084582.1| hypothetical protein EscherichcoliO157_22736 [Escherichia coli
           O157:H7 str. EC4024]
 gi|209918507|ref|YP_002292591.1| hypothetical protein ECSE_1316 [Escherichia coli SE11]
 gi|215486562|ref|YP_002328993.1| hypothetical protein E2348C_1457 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218549042|ref|YP_002382833.1| hypothetical protein EFER_1690 [Escherichia fergusonii ATCC 35469]
 gi|218553819|ref|YP_002386732.1| hypothetical protein ECIAI1_1286 [Escherichia coli IAI1]
 gi|218558252|ref|YP_002391165.1| hypothetical protein ECS88_1401 [Escherichia coli S88]
 gi|218689257|ref|YP_002397469.1| hypothetical protein ECED1_1473 [Escherichia coli ED1a]
 gi|218694838|ref|YP_002402505.1| hypothetical protein EC55989_1424 [Escherichia coli 55989]
 gi|218699974|ref|YP_002407603.1| hypothetical protein ECIAI39_1603 [Escherichia coli IAI39]
 gi|218704790|ref|YP_002412309.1| hypothetical protein ECUMN_1565 [Escherichia coli UMN026]
 gi|238900500|ref|YP_002926296.1| hypothetical protein BWG_1096 [Escherichia coli BW2952]
 gi|253773736|ref|YP_003036567.1| hypothetical protein ECBD_2356 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161346|ref|YP_003044454.1| hypothetical protein ECB_01241 [Escherichia coli B str. REL606]
 gi|254792855|ref|YP_003077692.1| hypothetical protein ECSP_1785 [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018487|ref|ZP_05432352.1| hypothetical protein ShiD9_06202 [Shigella sp. D9]
 gi|256023025|ref|ZP_05436890.1| hypothetical protein E4_06609 [Escherichia sp. 4_1_40B]
 gi|260843615|ref|YP_003221393.1| hypothetical protein ECO103_1429 [Escherichia coli O103:H2 str.
           12009]
 gi|260867716|ref|YP_003234118.1| hypothetical protein ECO111_1647 [Escherichia coli O111:H- str.
           11128]
 gi|261224249|ref|ZP_05938530.1| hypothetical protein EscherichiacoliO157_06545 [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257495|ref|ZP_05950028.1| hypothetical protein EscherichiacoliO157EcO_16982 [Escherichia coli
           O157:H7 str. FRIK966]
 gi|293404808|ref|ZP_06648800.1| hypothetical protein ECGG_00131 [Escherichia coli FVEC1412]
 gi|293409651|ref|ZP_06653227.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B354]
 gi|293414599|ref|ZP_06657248.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B185]
 gi|293433628|ref|ZP_06662056.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B088]
 gi|298380449|ref|ZP_06990048.1| hypothetical protein ECFG_00142 [Escherichia coli FVEC1302]
 gi|300820148|ref|ZP_07100317.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1]
 gi|300822570|ref|ZP_07102709.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7]
 gi|300896125|ref|ZP_07114679.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1]
 gi|300904136|ref|ZP_07122009.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1]
 gi|300919447|ref|ZP_07135948.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1]
 gi|300926648|ref|ZP_07142425.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1]
 gi|300927773|ref|ZP_07143337.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1]
 gi|300940070|ref|ZP_07154680.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1]
 gi|300951923|ref|ZP_07165727.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1]
 gi|300955868|ref|ZP_07168207.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1]
 gi|300971790|ref|ZP_07171624.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1]
 gi|300982414|ref|ZP_07176111.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1]
 gi|301019491|ref|ZP_07183660.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1]
 gi|301046929|ref|ZP_07194043.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1]
 gi|301304782|ref|ZP_07210888.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1]
 gi|301327009|ref|ZP_07220296.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1]
 gi|301647239|ref|ZP_07247058.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1]
 gi|306813710|ref|ZP_07447891.1| hypothetical protein ECNC101_17397 [Escherichia coli NC101]
 gi|307137904|ref|ZP_07497260.1| hypothetical protein EcolH7_07197 [Escherichia coli H736]
 gi|307309979|ref|ZP_07589629.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli W]
 gi|309793260|ref|ZP_07687687.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7]
 gi|312966805|ref|ZP_07781023.1| yrdC domain protein [Escherichia coli 2362-75]
 gi|331657314|ref|ZP_08358276.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA206]
 gi|331662678|ref|ZP_08363601.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA143]
 gi|331682752|ref|ZP_08383371.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H299]
 gi|84027907|sp|P0AFR5|YCIO_ECOL6 RecName: Full=Uncharacterized protein yciO
 gi|84027908|sp|P0AFR4|YCIO_ECOLI RecName: Full=Uncharacterized protein yciO
 gi|84027909|sp|P0AFR6|YCIO_SHIFL RecName: Full=Uncharacterized protein yciO
 gi|85674890|dbj|BAA14801.2| conserved hypothetical protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87081864|gb|AAC74349.2| predicted RNA binding protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110343088|gb|ABG69325.1| probable translation factor YciO [Escherichia coli 536]
 gi|157066452|gb|ABV05707.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli HS]
 gi|157077840|gb|ABV17548.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E24377A]
 gi|169755297|gb|ACA77996.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli ATCC 8739]
 gi|169888779|gb|ACB02486.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187430512|gb|ACD09786.1| Sua5/YciO/YrdC/YwlC family protein [Shigella boydii CDC 3083-94]
 gi|188490575|gb|EDU65678.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638]
 gi|189354813|gb|EDU73232.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|190903293|gb|EDV63014.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A]
 gi|192956752|gb|EDV87207.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019]
 gi|194416711|gb|EDX32841.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012]
 gi|209911766|dbj|BAG76840.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|215264634|emb|CAS09005.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218351570|emb|CAU97282.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|218356583|emb|CAQ89206.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
 gi|218360587|emb|CAQ98145.1| conserved hypothetical protein [Escherichia coli IAI1]
 gi|218365021|emb|CAR02724.1| conserved hypothetical protein [Escherichia coli S88]
 gi|218369960|emb|CAR17734.1| conserved hypothetical protein [Escherichia coli IAI39]
 gi|218426821|emb|CAR07671.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|218431887|emb|CAR12772.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|222033071|emb|CAP75811.1| Uncharacterized protein yciO [Escherichia coli LF82]
 gi|238860471|gb|ACR62469.1| conserved protein [Escherichia coli BW2952]
 gi|242377044|emb|CAQ31768.1| conserved protein [Escherichia coli BL21(DE3)]
 gi|253324780|gb|ACT29382.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973247|gb|ACT38918.1| hypothetical protein ECB_01241 [Escherichia coli B str. REL606]
 gi|253977461|gb|ACT43131.1| hypothetical protein ECD_01241 [Escherichia coli BL21(DE3)]
 gi|254592255|gb|ACT71616.1| predicted RNA-binding protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257758762|dbj|BAI30259.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257764072|dbj|BAI35567.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|260449603|gb|ACX40025.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli DH1]
 gi|281178455|dbj|BAI54785.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|291324447|gb|EFE63869.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B088]
 gi|291427016|gb|EFF00043.1| hypothetical protein ECGG_00131 [Escherichia coli FVEC1412]
 gi|291434657|gb|EFF07630.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B185]
 gi|291470119|gb|EFF12603.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B354]
 gi|294493370|gb|ADE92126.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli IHE3034]
 gi|298277891|gb|EFI19405.1| hypothetical protein ECFG_00142 [Escherichia coli FVEC1302]
 gi|300301155|gb|EFJ57540.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1]
 gi|300309296|gb|EFJ63816.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1]
 gi|300317270|gb|EFJ67054.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1]
 gi|300359989|gb|EFJ75859.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1]
 gi|300399232|gb|EFJ82770.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1]
 gi|300403901|gb|EFJ87439.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1]
 gi|300408752|gb|EFJ92290.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1]
 gi|300413469|gb|EFJ96779.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1]
 gi|300417349|gb|EFK00660.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1]
 gi|300448867|gb|EFK12487.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1]
 gi|300455105|gb|EFK18598.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1]
 gi|300464166|gb|EFK27659.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1]
 gi|300524986|gb|EFK46055.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7]
 gi|300527303|gb|EFK48365.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1]
 gi|300839903|gb|EFK67663.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1]
 gi|300846357|gb|EFK74117.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1]
 gi|301074601|gb|EFK89407.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1]
 gi|305852984|gb|EFM53429.1| hypothetical protein ECNC101_17397 [Escherichia coli NC101]
 gi|306909697|gb|EFN40191.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli W]
 gi|307553325|gb|ADN46100.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli ABU 83972]
 gi|307627159|gb|ADN71463.1| hypothetical protein UM146_10450 [Escherichia coli UM146]
 gi|308122847|gb|EFO60109.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7]
 gi|309701565|emb|CBJ00872.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|312288269|gb|EFR16171.1| yrdC domain protein [Escherichia coli 2362-75]
 gi|312945901|gb|ADR26728.1| hypothetical protein NRG857_06500 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313649456|gb|EFS13887.1| yrdC domain protein [Shigella flexneri 2a str. 2457T]
 gi|315060518|gb|ADT74845.1| hypothetical protein ECW_m1359 [Escherichia coli W]
 gi|315135903|dbj|BAJ43062.1| hypothetical protein ECDH1ME8569_1206 [Escherichia coli DH1]
 gi|315254774|gb|EFU34742.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 85-1]
 gi|315289105|gb|EFU48503.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 110-3]
 gi|315294758|gb|EFU54101.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 153-1]
 gi|315297256|gb|EFU56536.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 16-3]
 gi|315619345|gb|EFU99889.1| yrdC domain protein [Escherichia coli 3431]
 gi|320181707|gb|EFW56618.1| YciO family [Shigella boydii ATCC 9905]
 gi|320189982|gb|EFW64634.1| YciO family [Escherichia coli O157:H7 str. EC1212]
 gi|320637161|gb|EFX06987.1| hypothetical protein ECO5101_20125 [Escherichia coli O157:H7 str.
           G5101]
 gi|320642527|gb|EFX11775.1| hypothetical protein ECO9389_21424 [Escherichia coli O157:H- str.
           493-89]
 gi|320647880|gb|EFX16588.1| hypothetical protein ECO2687_09354 [Escherichia coli O157:H- str. H
           2687]
 gi|320653482|gb|EFX21587.1| hypothetical protein ECO7815_06412 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659182|gb|EFX26771.1| hypothetical protein ECO5905_15803 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320663975|gb|EFX31162.1| hypothetical protein ECOSU61_13093 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323162372|gb|EFZ48227.1| yrdC domain protein [Escherichia coli E128010]
 gi|323168240|gb|EFZ53925.1| yrdC domain protein [Shigella sonnei 53G]
 gi|323172377|gb|EFZ58014.1| yrdC domain protein [Escherichia coli LT-68]
 gi|323179781|gb|EFZ65342.1| yrdC domain protein [Escherichia coli 1180]
 gi|323185574|gb|EFZ70935.1| yrdC domain protein [Escherichia coli 1357]
 gi|323378919|gb|ADX51187.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli KO11]
 gi|323937588|gb|EGB33856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E1520]
 gi|323942381|gb|EGB38551.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E482]
 gi|323947452|gb|EGB43456.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H120]
 gi|323949130|gb|EGB45022.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H252]
 gi|323953862|gb|EGB49663.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H263]
 gi|323962567|gb|EGB58147.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H489]
 gi|323973493|gb|EGB68679.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA007]
 gi|324006123|gb|EGB75342.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 57-2]
 gi|324011322|gb|EGB80541.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 60-1]
 gi|324018953|gb|EGB88172.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 117-3]
 gi|324113139|gb|EGC07114.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia fergusonii B253]
 gi|324117540|gb|EGC11446.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E1167]
 gi|325497459|gb|EGC95318.1| hypothetical protein ECD227_1556 [Escherichia fergusonii ECD227]
 gi|326341073|gb|EGD64866.1| YciO family [Escherichia coli O157:H7 str. 1125]
 gi|331055562|gb|EGI27571.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA206]
 gi|331061100|gb|EGI33064.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA143]
 gi|331080383|gb|EGI51562.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H299]
 gi|332091657|gb|EGI96737.1| yrdC domain protein [Shigella boydii 5216-82]
 gi|332094838|gb|EGI99882.1| yrdC domain protein [Shigella boydii 3594-74]
 gi|332098121|gb|EGJ03094.1| yrdC domain protein [Shigella dysenteriae 155-74]
 gi|332342859|gb|AEE56193.1| conserved hypothetical protein [Escherichia coli UMNK88]
 gi|332757919|gb|EGJ88246.1| yrdC domain protein [Shigella flexneri 4343-70]
 gi|332759350|gb|EGJ89658.1| yrdC domain protein [Shigella flexneri 2747-71]
 gi|332760362|gb|EGJ90652.1| yrdC domain protein [Shigella flexneri K-671]
 gi|332767502|gb|EGJ97696.1| yrdC domain protein [Shigella flexneri 2930-71]
 gi|333004582|gb|EGK24106.1| yrdC domain protein [Shigella flexneri VA-6]
 gi|333005653|gb|EGK25171.1| yrdC domain protein [Shigella flexneri K-218]
 gi|333019096|gb|EGK38386.1| yrdC domain protein [Shigella flexneri K-304]
          Length = 206

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 192 PV-VVREG 198


>gi|325274080|ref|ZP_08140224.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas sp. TJI-51]
 gi|324100791|gb|EGB98493.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas sp. TJI-51]
          Length = 201

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E +  G  +  PT++ Y L     +  AI R+  ++     +       D+S
Sbjct: 6   PRLIRQAVEIIRKGGVVVYPTDSAYALGCQIGDKAAIERVRRLRGLDKTHNFTLMCCDMS 65

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +L+         L     +T   RVP    T  L
Sbjct: 66  QLGLYAKVDTGTFRLLKAHVPGPYTFILNGTREVP-RLLLHEKRRTIGLRVPDHAITLAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G        + +   +   + L+IDGG   +   STI+++  ++
Sbjct: 125 LAELGEPLMSVSLILPGDNEPMTDPYEIRERLEHHVDLVIDGGYGDL-KASTIIDLSGDE 183

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 184 P-ELIREGC 191


>gi|223983284|ref|ZP_03633477.1| hypothetical protein HOLDEFILI_00757 [Holdemania filiformis DSM
           12042]
 gi|223964777|gb|EEF69096.1| hypothetical protein HOLDEFILI_00757 [Holdemania filiformis DSM
           12042]
          Length = 201

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 7/207 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+   +T  ++  +  E L+ G  +A PT+TVYGLAV      AI ++ E K+RP   P 
Sbjct: 1   METQRLTKKDS-AQIVEILNRGGVVAFPTDTVYGLAVRYDLKEAILKMKEAKQRPETKPF 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              VS  + +++ A  D  S  L   + PG LTLV       +I  L T    T   R+P
Sbjct: 60  PMMVSSKAQIERVAVTDARSQKLIDQWMPGALTLVFKKRP--EIDELVTNGFPTIGIRMP 117

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              F  ++I   G PL +PSAN SGQ S T  + +L   +   I  ++ G  S     ST
Sbjct: 118 DDDFVLEIINRVGVPLLVPSANLSGQPSCTTSEEVLK-QLDGRIDAVVLGE-SGASTAST 175

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           + +     +++ILR G +++E L+ +I
Sbjct: 176 VCD-TTGDELKILRQGPIKLEDLEASI 201


>gi|296159003|ref|ZP_06841831.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1]
 gi|295890878|gb|EFG70668.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. Ch1-1]
          Length = 211

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S
Sbjct: 14  PRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKEAVERLRRIRGLDEKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          LS  + KT   RVP    T  +
Sbjct: 74  ELSNFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    N    + + + K++ L+IDGG   +   ST++++   +
Sbjct: 133 LEELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGGPC-VCEPSTVIDLTGAE 191

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 192 PVLVRAGRG 200


>gi|104782899|ref|YP_609397.1| hypothetical protein PSEEN3903 [Pseudomonas entomophila L48]
 gi|95111886|emb|CAK16610.1| conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein
           [Pseudomonas entomophila L48]
          Length = 221

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 82/190 (43%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E +  G  +  PT++ Y +     +  AI R+  +++    +       D+S
Sbjct: 26  ARLIKQAVEIIRKGGVVVYPTDSAYAMGCQIGDKNAIERVRRLRQLDKNHNFTLLCCDLS 85

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVP-CGFTKK 126
            +   A +D  +  L K   PGP T +L+  +T ++  L      +T   RVP       
Sbjct: 86  QMGTFAKIDTATFRLLKAHIPGPYTFILN--ATREVPRLLMHEKRRTIGLRVPSNPIVLA 143

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G        + +   +   + LIIDGG   +   ST++++  +
Sbjct: 144 LLEELGEPLMSVSLILPGDEEPMTDPYEIRQRLEHHVDLIIDGGFGDL-KASTVIDLSGD 202

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 203 EPA-LIREGC 211


>gi|302536945|ref|ZP_07289287.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. C]
 gi|302445840|gb|EFL17656.1| Sua5/YciO/YrdC/YwlC [Streptomyces sp. C]
          Length = 215

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 6/204 (2%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             TD    LR+A   +  G  + +PT+T+YG+  D+ +  A+  L   K R    P    
Sbjct: 9   DATDRKTGLREAASAVRRGELVVLPTDTLYGIGADAFSAEAVGDLLAAKGRGRNMPTPVL 68

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + +          +  L   FWPG LTLV     +  +         T   R+P  
Sbjct: 69  IGSPNTLHGLVTDFSEQAWELVDAFWPGGLTLVAKHQPS--LAWDLGETRGTVAVRMPLH 126

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + T   P+A+ SAN SG  +  +        +   + + +DGG +     S+IV+
Sbjct: 127 PVAIELLTEVGPMAVSSANLSGHPAPADC-DAAREMLGDSVSVYLDGGPTPSTEPSSIVD 185

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           V  +  V +LR G L    L+  +
Sbjct: 186 VTGKVPV-LLREGALSAAQLREVV 208


>gi|262402041|ref|ZP_06078605.1| YrdC family protein [Vibrio sp. RC586]
 gi|262351687|gb|EEZ00819.1| YrdC family protein [Vibrio sp. RC586]
          Length = 185

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L++A   L +G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   ++   
Sbjct: 2   DNLQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +   D L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 62  LRPYIDEDQLTEQQLLQVLASWPAPLTWVMP--ASVDTPSWVRGQFDTVAVRVSNHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G PL   SAN SGQ + T  + ++ + +  +I  +++G  S     S I + + 
Sbjct: 120 QLCLAFGKPLTSTSANLSGQPACTTRQEVV-AQLGNQIETVLEGETSGRCGPSEIRDARS 178

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 179 ---LQVLRQG 185


>gi|333007604|gb|EGK27082.1| yrdC domain protein [Shigella flexneri K-272]
 gi|333019538|gb|EGK38818.1| yrdC domain protein [Shigella flexneri K-227]
          Length = 206

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKVEDKNAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYSFVDNVAFRLMKNNTPGSYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 192 PV-VVREG 198


>gi|315604643|ref|ZP_07879706.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313655|gb|EFU61709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 224

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 7/212 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I       AL +A   L  G  + +PT+TVYG+  D+ N  A+  +   K R    P   
Sbjct: 12  IAPTVRDEALARAAAVLSNGGILVVPTDTVYGIGCDAANHEAVAEVLAAKGRGRQMPPPV 71

Query: 63  HVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V+ +  +      V   +  LA+ FWPG LTL+L            TA   T   R+P 
Sbjct: 72  LVASVDAIDTLCVDVPDAARALARAFWPGALTLILRARPDLGWDLGQTAG--TIGVRMPN 129

Query: 122 GFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +L++ +G P+A+ SAN +GQ   T V+  + +S    +   +DGG ++    S+I
Sbjct: 130 QDALLRLLKEFG-PMAVTSANLTGQPPATTVEQAV-ASFGARVGAYLDGGPTRASTASSI 187

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEY 212
           ++     + R +R G + +E L     V +  
Sbjct: 188 IDC-AHGEPRAIRLGAISLEELSSRAGVSIAP 218


>gi|307354113|ref|YP_003895164.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM
           11571]
 gi|307157346|gb|ADN36726.1| Sua5/YciO/YrdC/YwlC family protein [Methanoplanus petrolearius DSM
           11571]
          Length = 192

 Score =  179 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 92/197 (46%), Gaps = 13/197 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L     I  PTETVYGL  D+ +  A+ RLYE K RP   P+   VSD+ M+ 
Sbjct: 5   IDEAVRVLRRDGIIVYPTETVYGLGCDALSDEAVSRLYEAKCRPLSKPVSIAVSDMEMLH 64

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             A +D       K F PGP+T+++   +   I P+ T        R+P      ++IE 
Sbjct: 65  AVAIIDEAEEKFIKRFLPGPVTVIV--RAKKCIPPVLTGGTGLIGIRMPDNDIAIEIIEK 122

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G P+   SAN SG IS   V  +           IID G    G  ST+V++   K VR
Sbjct: 123 FGSPITSTSANLSGDISPVTVSQV-----NVIYDHIIDSGTLP-GNPSTVVDLVNRKIVR 176

Query: 191 ILRPGGLEIETLKRAIS 207
                G +IE +   I+
Sbjct: 177 ----AGAQIEEVASFIA 189


>gi|21223722|ref|NP_629501.1| hypothetical protein SCO5362 [Streptomyces coelicolor A3(2)]
 gi|256785185|ref|ZP_05523616.1| hypothetical protein SlivT_11905 [Streptomyces lividans TK24]
 gi|289769078|ref|ZP_06528456.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24]
 gi|8568784|emb|CAB94533.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289699277|gb|EFD66706.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24]
          Length = 215

 Score =  179 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 5/198 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             LR+A   +  G  + +PT+TVYG+  D+    A+  L E K R    P    +   + 
Sbjct: 15  TGLREAASAVRRGELVVLPTDTVYGIGADAFAAEAVGDLLEAKGRGRNMPSPVLIGSPNT 74

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +         ++  L   FWPG LTLV     +       T    T   R+P       +
Sbjct: 75  LHGLVTDFSEMAWELVDAFWPGALTLVAKHQPSLQWDLGET--RGTVAVRMPLHPVAIEL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            T   P+A+ SAN +G  +  +        +   + + +DGG +   + S+IV+V  E  
Sbjct: 133 LTEVGPMAVSSANLTGHPAPEDC-DAAQQMLGDSVSVYLDGGPTPGIVPSSIVDVTREVP 191

Query: 189 VRILRPGGLEIETLKRAI 206
           V +LR G L  E L++ +
Sbjct: 192 V-LLRAGALSAEELRKVV 208


>gi|124007775|ref|ZP_01692477.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134]
 gi|123986721|gb|EAY26502.1| Sua5/YciO/YrdC/YwlC family protein [Microscilla marina ATCC 23134]
          Length = 209

 Score =  179 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 8/196 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM--NPLICHVS 65
           +   + +  E L +G  I  PT+TVYGL  D  N  A+ ++ +IKK        L    +
Sbjct: 14  EMRKISQVVECLRSGGVIIYPTDTVYGLGCDIHNQKAVEKICQIKKINPKKRKNLSFICN 73

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+S + ++A +   +  L K   PGP T +L+   ++ +  +   + K    R+P     
Sbjct: 74  DLSHIAEYARIGNATFKLMKKALPGPYTFILET--SSRVPKILNISKKNVGIRIPDNNIA 131

Query: 126 KLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +LI +  G+P+   S     + +        +      ++ L+IDGG     + STI++ 
Sbjct: 132 RLIVKELGNPIITSSVLAEDEVVKYLTDPEDIYEQYKHKVDLVIDGGNG-SNVGSTIIDC 190

Query: 184 QCEKKVRILRPGGLEI 199
             +  V +LR G  +I
Sbjct: 191 SDDN-VTVLRQGAGDI 205


>gi|15801912|ref|NP_287932.1| hypothetical protein Z2543 [Escherichia coli O157:H7 EDL933]
 gi|24112666|ref|NP_707176.1| hypothetical protein SF1270 [Shigella flexneri 2a str. 301]
 gi|26247596|ref|NP_753636.1| hypothetical protein c1732 [Escherichia coli CFT073]
 gi|30062790|ref|NP_836961.1| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T]
 gi|74312363|ref|YP_310782.1| hypothetical protein SSON_1876 [Shigella sonnei Ss046]
 gi|82544279|ref|YP_408226.1| hypothetical protein SBO_1799 [Shigella boydii Sb227]
 gi|91210558|ref|YP_540544.1| hypothetical protein UTI89_C1535 [Escherichia coli UTI89]
 gi|110805270|ref|YP_688790.1| hypothetical protein SFV_1280 [Shigella flexneri 5 str. 8401]
 gi|117623527|ref|YP_852440.1| hypothetical protein APECO1_427 [Escherichia coli APEC O1]
 gi|162139712|ref|NP_309866.3| hypothetical protein ECs1839 [Escherichia coli O157:H7 str. Sakai]
 gi|170681810|ref|YP_001743920.1| hypothetical protein EcSMS35_1866 [Escherichia coli SMS-3-5]
 gi|187776059|ref|ZP_02800082.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188025120|ref|ZP_02776177.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189010692|ref|ZP_02808776.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189403568|ref|ZP_02796272.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404340|ref|ZP_02788593.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189405385|ref|ZP_02815073.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189406137|ref|ZP_02826620.2| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|191171102|ref|ZP_03032653.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11]
 gi|193062588|ref|ZP_03043682.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22]
 gi|194425821|ref|ZP_03058377.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171]
 gi|194436951|ref|ZP_03069050.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1]
 gi|208810838|ref|ZP_03252671.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815519|ref|ZP_03256698.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819462|ref|ZP_03259782.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400954|ref|YP_002270321.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329124|ref|ZP_03445204.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|227886305|ref|ZP_04004110.1| RNA binding protein [Escherichia coli 83972]
 gi|237705290|ref|ZP_04535771.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|291282354|ref|YP_003499172.1| hypothetical protein G2583_1606 [Escherichia coli O55:H7 str.
           CB9615]
 gi|331641825|ref|ZP_08342960.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H736]
 gi|331646588|ref|ZP_08347691.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M605]
 gi|331652304|ref|ZP_08353323.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M718]
 gi|331672792|ref|ZP_08373578.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA280]
 gi|331677045|ref|ZP_08377741.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H591]
 gi|332279543|ref|ZP_08391956.1| yciO [Shigella sp. D9]
 gi|12515530|gb|AAG56548.1|AE005380_7 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|26107998|gb|AAN80198.1|AE016760_57 Protein yciO [Escherichia coli CFT073]
 gi|13361304|dbj|BAB35262.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|24051580|gb|AAN42883.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041038|gb|AAP16768.1| hypothetical protein S1355 [Shigella flexneri 2a str. 2457T]
 gi|73855840|gb|AAZ88547.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81245690|gb|ABB66398.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91072132|gb|ABE07013.1| hypothetical protein UTI89_C1535 [Escherichia coli UTI89]
 gi|110614818|gb|ABF03485.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115512651|gb|ABJ00726.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|170519528|gb|ACB17706.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5]
 gi|187769320|gb|EDU33164.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014770|gb|EDU52892.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188998955|gb|EDU67941.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359972|gb|EDU78391.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366283|gb|EDU84699.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370440|gb|EDU88856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189376257|gb|EDU94673.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|190908834|gb|EDV68422.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11]
 gi|192931710|gb|EDV84310.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22]
 gi|194415876|gb|EDX32142.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B171]
 gi|194423934|gb|EDX39922.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1]
 gi|208724344|gb|EDZ74052.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732167|gb|EDZ80855.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739585|gb|EDZ87267.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162354|gb|ACI39787.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772038|gb|ACI84331.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|209772040|gb|ACI84332.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|209772042|gb|ACI84333.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|209772044|gb|ACI84334.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|209772046|gb|ACI84335.1| hypothetical protein ECs1839 [Escherichia coli]
 gi|217317563|gb|EEC25991.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|226900047|gb|EEH86306.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836509|gb|EEJ46975.1| RNA binding protein [Escherichia coli 83972]
 gi|281600689|gb|ADA73673.1| hypothetical protein SFxv_1441 [Shigella flexneri 2002017]
 gi|290762227|gb|ADD56188.1| hypothetical protein G2583_1606 [Escherichia coli O55:H7 str.
           CB9615]
 gi|320176681|gb|EFW51719.1| YciO family [Shigella dysenteriae CDC 74-1112]
 gi|320187505|gb|EFW62191.1| YciO family [Shigella flexneri CDC 796-83]
 gi|320195720|gb|EFW70345.1| YciO family [Escherichia coli WV_060327]
 gi|320199302|gb|EFW73893.1| YciO family [Escherichia coli EC4100B]
 gi|326343314|gb|EGD67081.1| YciO family [Escherichia coli O157:H7 str. 1044]
 gi|330911130|gb|EGH39640.1| YciO family [Escherichia coli AA86]
 gi|331038623|gb|EGI10843.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H736]
 gi|331045340|gb|EGI17467.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M605]
 gi|331050582|gb|EGI22640.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli M718]
 gi|331070013|gb|EGI41382.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA280]
 gi|331075734|gb|EGI47032.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli H591]
 gi|332101895|gb|EGJ05241.1| yciO [Shigella sp. D9]
          Length = 218

 Score =  179 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 26  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 85

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 86  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 144

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 145 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 203

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 204 PV-VVREG 210


>gi|15608441|ref|NP_215817.1| hypothetical protein Rv1301 [Mycobacterium tuberculosis H37Rv]
 gi|15840751|ref|NP_335788.1| hypothetical protein MT1340 [Mycobacterium tuberculosis CDC1551]
 gi|148661089|ref|YP_001282612.1| hypothetical protein MRA_1309 [Mycobacterium tuberculosis H37Ra]
 gi|148822519|ref|YP_001287273.1| hypothetical protein TBFG_11328 [Mycobacterium tuberculosis F11]
 gi|167969628|ref|ZP_02551905.1| hypothetical protein MtubH3_17041 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403143|ref|ZP_03415324.1| hypothetical protein Mtub0_05486 [Mycobacterium tuberculosis
           02_1987]
 gi|215410940|ref|ZP_03419748.1| hypothetical protein Mtub9_06325 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215445479|ref|ZP_03432231.1| hypothetical protein MtubT_05893 [Mycobacterium tuberculosis T85]
 gi|218753009|ref|ZP_03531805.1| hypothetical protein MtubG1_05995 [Mycobacterium tuberculosis GM
           1503]
 gi|253799653|ref|YP_003032654.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           1435]
 gi|254231559|ref|ZP_04924886.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364198|ref|ZP_04980244.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550309|ref|ZP_05140756.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554909|ref|ZP_06444119.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289745047|ref|ZP_06504425.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289757401|ref|ZP_06516779.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T85]
 gi|289761456|ref|ZP_06520834.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297633853|ref|ZP_06951633.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           4207]
 gi|297730840|ref|ZP_06959958.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           R506]
 gi|298524805|ref|ZP_07012214.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775473|ref|ZP_07413810.1| hypothetical protein TMAG_01936 [Mycobacterium tuberculosis
           SUMu001]
 gi|306781616|ref|ZP_07419953.1| hypothetical protein TMBG_01305 [Mycobacterium tuberculosis
           SUMu002]
 gi|306784025|ref|ZP_07422347.1| hypothetical protein TMCG_00932 [Mycobacterium tuberculosis
           SUMu003]
 gi|306788388|ref|ZP_07426710.1| hypothetical protein TMDG_01180 [Mycobacterium tuberculosis
           SUMu004]
 gi|306792715|ref|ZP_07431017.1| hypothetical protein TMEG_01198 [Mycobacterium tuberculosis
           SUMu005]
 gi|306797121|ref|ZP_07435423.1| hypothetical protein TMFG_02493 [Mycobacterium tuberculosis
           SUMu006]
 gi|306803001|ref|ZP_07439669.1| hypothetical protein TMHG_00486 [Mycobacterium tuberculosis
           SUMu008]
 gi|306807191|ref|ZP_07443859.1| hypothetical protein TMGG_01864 [Mycobacterium tuberculosis
           SUMu007]
 gi|306967390|ref|ZP_07480051.1| hypothetical protein TMIG_02976 [Mycobacterium tuberculosis
           SUMu009]
 gi|306971582|ref|ZP_07484243.1| hypothetical protein TMJG_03944 [Mycobacterium tuberculosis
           SUMu010]
 gi|307079296|ref|ZP_07488466.1| hypothetical protein TMKG_01801 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083865|ref|ZP_07492978.1| hypothetical protein TMLG_02639 [Mycobacterium tuberculosis
           SUMu012]
 gi|313658172|ref|ZP_07815052.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           V2475]
 gi|1722959|sp|Q10618|Y1301_MYCTU RecName: Full=Uncharacterized protein Rv1301/MT1340
 gi|1322425|emb|CAA97734.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880943|gb|AAK45602.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           CDC1551]
 gi|124600618|gb|EAY59628.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134149712|gb|EBA41757.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505241|gb|ABQ73050.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
 gi|148721046|gb|ABR05671.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|253321156|gb|ACT25759.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289439541|gb|EFD22034.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289685575|gb|EFD53063.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289708962|gb|EFD72978.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289712965|gb|EFD76977.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T85]
 gi|298494599|gb|EFI29893.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216021|gb|EFO75420.1| hypothetical protein TMAG_01936 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325578|gb|EFP14429.1| hypothetical protein TMBG_01305 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331258|gb|EFP20109.1| hypothetical protein TMCG_00932 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335074|gb|EFP23925.1| hypothetical protein TMDG_01180 [Mycobacterium tuberculosis
           SUMu004]
 gi|308338882|gb|EFP27733.1| hypothetical protein TMEG_01198 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342496|gb|EFP31347.1| hypothetical protein TMFG_02493 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346430|gb|EFP35281.1| hypothetical protein TMGG_01864 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350301|gb|EFP39152.1| hypothetical protein TMHG_00486 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355002|gb|EFP43853.1| hypothetical protein TMIG_02976 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358950|gb|EFP47801.1| hypothetical protein TMJG_03944 [Mycobacterium tuberculosis
           SUMu010]
 gi|308362832|gb|EFP51683.1| hypothetical protein TMKG_01801 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366498|gb|EFP55349.1| hypothetical protein TMLG_02639 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720258|gb|EGB29357.1| hypothetical protein TMMG_01997 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902923|gb|EGE49856.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           W-148]
 gi|328459399|gb|AEB04822.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 217

 Score =  179 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 5/202 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +  A   + AG  + +PT+TVYG+  D+ + +A+  L   K R    P+   V    
Sbjct: 14  SRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++    S+   +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 74  TIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG     + +    S +   + + +D G S+    STIV++    
Sbjct: 132 LLREVGPMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGAT 190

Query: 188 KVRILRPGGLEIETLKRAISVE 209
             R+LRPG +  E +   + V+
Sbjct: 191 P-RVLRPGPVSTERIAEVLGVD 211


>gi|213964492|ref|ZP_03392692.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium amycolatum
           SK46]
 gi|213952685|gb|EEB64067.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium amycolatum
           SK46]
          Length = 218

 Score =  179 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 9/199 (4%)

Query: 2   QIMSI-TDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +IM   TD N   A+  A + + AG  + +PT+TVYGL  D+ +  A+  L   K R   
Sbjct: 3   RIMDCSTDENRERAIAAAVDAVKAGRLVVMPTDTVYGLGCDAFDNQAVASLLRAKHRGPD 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V   + ++       P +  L + FWPG L+LV++   +   +   TA   T  
Sbjct: 63  MPVPVLVGSWNTIEGLVREYSPAARTLVEAFWPGGLSLVVNQAPSLPWNLGDTAG--TVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       I     P+A+ SAN SGQ   TN        +  E  + +DGG + IG 
Sbjct: 121 LRMPLHPIAIEILRRTGPMAVSSANISGQAPATNAVRA-KQMLGGEAAVYVDGGEATIGT 179

Query: 177 ESTIVNVQCEKKVRILRPG 195
            STIV++      RILR G
Sbjct: 180 PSTIVDISTPVP-RILREG 197


>gi|240169513|ref|ZP_04748172.1| hypothetical protein MkanA1_09381 [Mycobacterium kansasii ATCC
           12478]
          Length = 219

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 5/207 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ +  A   L AG  + +PT+TVYG+A D+ + +A+  L   K R    P+   V    
Sbjct: 16  SSGITAAVAALKAGRLVVMPTDTVYGVAADAFDRSAVDALLAAKGRGRDMPVGVLVGSWH 75

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++    SV P +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 76  TIEGLVYSVPPGARELIRAFWPGALSLVVVQAPSLQW--DLGDARGTVMLRMPLHPVAIE 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN SGQ +  +        +   + + +DGG +     STIV++    
Sbjct: 134 LLREVGPLAVSSANVSGQPAAVDAGEA-RRQLGDRVDVYLDGGPAAQQAASTIVDLTGAT 192

Query: 188 KVRILRPGGLEIETLKRAISVELEYCV 214
             RILRPG +  E +   + V++   +
Sbjct: 193 P-RILRPGPVSAERIAEVLGVDVATLI 218


>gi|327329872|gb|EGE71626.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL097PA1]
          Length = 300

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 6/199 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 58  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP    T++
Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++    
Sbjct: 176 LLRMTG-PLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVST 233

Query: 187 KKVRILRPGGLEIETLKRA 205
              +++R G L +E +   
Sbjct: 234 TDGKVVRQGALSLEAIHEV 252


>gi|312129970|ref|YP_003997310.1| translation factor sua5 [Leadbetterella byssophila DSM 17132]
 gi|311906516|gb|ADQ16957.1| translation factor SUA5 [Leadbetterella byssophila DSM 17132]
          Length = 205

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 5/190 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           D   +++  E L  G  I  PT+TVY +  +S +  A+ +L +IK  +P  N       D
Sbjct: 14  DMRKIKQVVECLMDGGIIIYPTDTVYSMGCNSYHNKAVEKLCKIKGIKPNQNKFSIVCHD 73

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-K 125
           +S +  +A V   +    K + PGP T +L   ST ++  L   + KT   RVP     +
Sbjct: 74  LSDIATYAKVSNEAFRTMKQYLPGPYTFILP--STNELPKLLQTSRKTIGIRVPDHMIPQ 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            LI+  G P+   S          N   ++         +IIDGG   I + STIV+   
Sbjct: 132 TLIKELGRPIITTSVKYDDIREYPNEIEVIYEENMYLADIIIDGGWCGI-VPSTIVDCTD 190

Query: 186 EKKVRILRPG 195
                ++R G
Sbjct: 191 PDHFEVIREG 200


>gi|91784220|ref|YP_559426.1| Sua5/YciO/YrdC/YwlC family translation factor [Burkholderia
           xenovorans LB400]
 gi|91688174|gb|ABE31374.1| Sua5/YciO/YrdC/YwlC family translation factor [Burkholderia
           xenovorans LB400]
          Length = 211

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S
Sbjct: 14  PRLVKQAVQIIKDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          LS  + KT   RVP    T  +
Sbjct: 74  ELSNFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    N    + + + K++ L+IDGG   +   ST++++   +
Sbjct: 133 LEELGQPLLGSTLIMPGETQPLNDPEEIRARLEKQLDLVIDGGPC-VCEPSTVIDLTGAE 191

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 192 PVLVRAGRG 200


>gi|312883596|ref|ZP_07743321.1| YrdC family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368819|gb|EFP96346.1| YrdC family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 206

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  +  KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNRIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    GQ    +    +   +   +  I++GG       +T+V+   ++
Sbjct: 133 LEALGEPLMSTSLILPGQDVTESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVVDFSEDE 191

Query: 188 KVRILRPGGLEIETLK 203
            V I+R G  +    +
Sbjct: 192 PV-IVRMGSGDPSAFE 206


>gi|86133170|ref|ZP_01051752.1| YrdC protein [Polaribacter sp. MED152]
 gi|85820033|gb|EAQ41180.1| YrdC protein [Polaribacter sp. MED152]
          Length = 206

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 9/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   ++KA + L  G  I  PT+TVYGL  D  N  A+ ++  IK             +D
Sbjct: 13  NPKEIQKAVKVLKNGGLIIYPTDTVYGLGCDITNTKALEKIALIKGIKLDKANFSFVCND 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           +S +  +   +D  +  L K   PGP T +L     ++  P      KT   R+P     
Sbjct: 73  LSHLSDYVKQLDSPTFKLLKRALPGPYTFILP---GSNNLPKVFKKRKTVGIRIPDNNIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + L+E  G+P+   S      I   T    ++       + L+IDGG       STI+++
Sbjct: 130 RTLVEALGNPIVSSSIRDDDDILEYTTDPELIYEKWNNLVDLVIDGGYGD-NQASTIIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
             +    ++R G   ++ L
Sbjct: 189 T-DNVPEVIREGKGSLDVL 206


>gi|282851604|ref|ZP_06260969.1| SUA5 domain protein [Lactobacillus gasseri 224-1]
 gi|282557572|gb|EFB63169.1| SUA5 domain protein [Lactobacillus gasseri 224-1]
          Length = 204

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 11/202 (5%)

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+  PSAN S + S T   H+    +  +I  IID G ++IGLESTIV++  E 
Sbjct: 2   ISELGKPIVGPSANTSTKPSPTTAGHVY-HDLKGKIAGIIDNGPTEIGLESTIVDLSVET 60

Query: 188 KVRILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVN 244
              +LRPG +  E + + +  E+   +        P++PGM   HYAP + V +      
Sbjct: 61  P-TVLRPGEITPEEISKVLGEEVLMNKGTTQTKGVPKAPGMKYRHYAPSAPVFI-VDKEE 118

Query: 245 PREALIRFGNVPIKNIENAIISLNLSKTGKL----KEAAFNLFNYMKIAD-DSGASSIAF 299
               +       +  ++  +  +N S    L     +AA NLF  ++  D ++    I  
Sbjct: 119 DFSKIKWDKETGVAALDEVLDKINSSNKYSLGTTIDKAAHNLFGALRYFDSENNIKRIYV 178

Query: 300 SSIPNHGLGIAINNRLERAAAP 321
               +  +  A  NRL +AAA 
Sbjct: 179 QGFDHGTISPAYMNRLNKAAAG 200


>gi|187924529|ref|YP_001896171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN]
 gi|187715723|gb|ACD16947.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phytofirmans PsJN]
          Length = 211

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S
Sbjct: 14  PRLVKQAVQIINDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          LS  + KT   RVP    T  +
Sbjct: 74  ELANFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    N    +   + K++ L+ID G   +   ST++++   +
Sbjct: 133 LEELGQPLLGSTLIMPGETQPLNDPEEIRERLEKQLDLVIDSGPC-VCEPSTVIDLTGAE 191

Query: 188 KVRILRPG 195
            V ++RPG
Sbjct: 192 PV-LVRPG 198


>gi|330503928|ref|YP_004380797.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina NK-01]
 gi|328918214|gb|AEB59045.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina NK-01]
          Length = 208

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E +  G  +  PT++ Y L     +  A+ R+  +++    +       D+S
Sbjct: 14  ARLIKQAVEIIRGGGVVVYPTDSSYALGCAIGDKNAVERIRRLRQLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD  +  L K   PGP T +L+         L     +T   RVP       L
Sbjct: 74  QIGLFAKVDTAAFRLLKNHTPGPYTFILNATREVP-RMLLHPKRRTIGIRVPSHPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +  + +   +   + LIIDGG   +   ST+VN+  ++
Sbjct: 133 LEQLGEPLMSVSLIMPGDELPMSDPYEMRQILEHHVDLIIDGGFGGL-EASTVVNL-ADE 190

Query: 188 KVRILRPGG 196
             ++LR G 
Sbjct: 191 SPQVLRVGC 199


>gi|260577562|ref|ZP_05845501.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258604286|gb|EEW17524.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 219

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 5/191 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  + +PT+TVYG+  D+ +  A+  L   K R    P+   V   + ++       
Sbjct: 24  VKGGRLVVLPTDTVYGIGCDAFDNEAVAALLRAKGRGPDMPVPVLVPSWTTIQGLVREYT 83

Query: 79  LS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
            +   L + FWPG L++V+    +   +   T    T   R+P       +     P+A+
Sbjct: 84  YNMRKLVEAFWPGGLSMVVHQAPSLPWNLGDT--RGTVMLRMPNQPIALELLERTGPMAV 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN SGQ   TNV+ +    +  ++   IDGG +  G+ STIV++   +  RILR G  
Sbjct: 142 SSANISGQPPATNVQ-MAEDQLGADVTTYIDGGEAHHGVASTIVDLSSGRP-RILREGAA 199

Query: 198 EIETLKRAISV 208
             E +   + +
Sbjct: 200 TTERVAEVLGM 210


>gi|301022797|ref|ZP_07186639.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1]
 gi|299881098|gb|EFI89309.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1]
          Length = 206

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQTL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 192 PV-VVREG 198


>gi|146306866|ref|YP_001187331.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina ymp]
 gi|145575067|gb|ABP84599.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas mendocina ymp]
          Length = 222

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E + +G  +  PT++ Y L     +  A+ R+  +++    +       D+S
Sbjct: 28  ARLIKQAVEIIRSGGVVVYPTDSSYALGCAIGDKNAVERIRRLRQLDDKHNFTLVCRDLS 87

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD  +  L K   PGP T +L+         L     +T   RVP       L
Sbjct: 88  QIGLFAKVDTAAFRLLKNHTPGPYTFILNATREVP-RMLLHPKRRTIGLRVPSHPIALAL 146

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +  + +   +  ++ LIIDGG   +   ST+VN+  + 
Sbjct: 147 LEQLGEPLMSVSLILPGDELPMSDPYEMRQILEHQVELIIDGGFGGL-EASTVVNL-ADD 204

Query: 188 KVRILRPGG 196
              ILR G 
Sbjct: 205 TPEILRVGC 213


>gi|228472867|ref|ZP_04057624.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275449|gb|EEK14226.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 207

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   ++K  + L  G  I  PT+TVYGL  D  +  A+ R+ ++K             +D
Sbjct: 13  NEREIQKVVDCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLDKANFSFICAD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S +  +   +D  +  L K   PG  T +L     ++  P      KT   R+P     
Sbjct: 73  LSNLSDYVKQIDTTTFKLLKRALPGAYTFILP---GSNNLPKEFKKKKTVGIRIPDNTIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + L+E  G+P+   S     ++   T    ++      ++ ++IDGG     + ST++++
Sbjct: 130 RTLVEKLGNPIVSSSIYDEDEVLEYTTDPELIFEKWQDKVDIVIDGGYGD-NVASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
                  ++R G   IE L
Sbjct: 189 SSGVP-ELIRQGKGSIEGL 206


>gi|84494536|ref|ZP_00993655.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649]
 gi|84384029|gb|EAP99909.1| Sua5/YciO/YrdC/YwlC [Janibacter sp. HTCC2649]
          Length = 260

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 5/212 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + KA   +  G  + +PT+T+YG+  D+ +P A++RL + K R    P    V ++ 
Sbjct: 14  QDGIAKATAGVRQGDLVVLPTDTLYGIGADAFSPDAVQRLLDAKGRGREMPPPVLVPEVR 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            V   A  V   +  L + +WPGPLTLV     +       T    T   R+P       
Sbjct: 74  TVDGLATDVPAYARALIERYWPGPLTLVFKAQPSLMWDLGDTGG--TVAVRMPDNEVALE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SANR+GQ +   +    ++ +   +   +DGG    GL STIV+     
Sbjct: 132 LLKEVGPMAVSSANRTGQPASRTIIDA-ATQLGASVEFYLDGGPVTGGLASTIVDCT-HP 189

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETST 219
           +  ILR G ++ + +    +  LE   +E + 
Sbjct: 190 EPTILRRGAIDADEIMALANQHLELPPEEPAA 221


>gi|317506168|ref|ZP_07963989.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255513|gb|EFV14762.1| Sua5/YciO/YrdC/YwlC family protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 213

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 5/187 (2%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLH 82
            + IPT+TVYGL  D+ +  A+  L   K R    P    V   + V+   A+V   +  
Sbjct: 29  LVVIPTDTVYGLGCDAFDQAAVAALLSAKGRGRDMPTPVLVGSWATVEGLTAAVTDQAWQ 88

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
           L   FWPGPL+LVL +  +  +         T   R+P       +     P+A+ SANR
Sbjct: 89  LIHAFWPGPLSLVLPVAPS--LAWDLGETRGTVMVRMPLHPVALQVLGKVGPMAVSSANR 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SGQ             +   + + ++ G + +G  STI+++      ++LR G L  E +
Sbjct: 147 SGQPPARTAAEA-KEQLGDSVAVYLESGSAPLGEPSTILDLSSGAP-KVLREGALSAERI 204

Query: 203 KRAISVE 209
              + V 
Sbjct: 205 AEVLGVP 211


>gi|295394651|ref|ZP_06804870.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972544|gb|EFG48400.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 220

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 6/207 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +    +     + IPT+TVYG+A D+ +P  + +L + K R    P    V     V 
Sbjct: 19  LEECARVVRGDGLLVIPTDTVYGIAADAFSPQGVAKLLQAKGRGRDMPPPVLVPRAETVM 78

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             A  VD   + L   FWPGPLT++ +   +  +H        T   R+P       + +
Sbjct: 79  GLAEAVDSSVMELTARFWPGPLTIICNAQPS--LHWDLGDTHGTVGLRMPDHEDTLALLS 136

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PLA+ SAN SG+ +  NV+    S +   + + +DGG +  G  STI+++      R
Sbjct: 137 KVGPLAVSSANLSGEPAAVNVEQA-QSMLGDRVDIFLDGGEAPGGQSSTIIDMSGSVP-R 194

Query: 191 ILRPGGLEIETLKRAISVELEYCVDET 217
           +LR G +  + L   +   LE    E 
Sbjct: 195 MLREGPISFDELAEVVD-GLEPLAPEA 220


>gi|31792494|ref|NP_854987.1| hypothetical protein Mb1333 [Mycobacterium bovis AF2122/97]
 gi|121637230|ref|YP_977453.1| hypothetical protein BCG_1361 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|215426623|ref|ZP_03424542.1| hypothetical protein MtubT9_09614 [Mycobacterium tuberculosis T92]
 gi|224989705|ref|YP_002644392.1| hypothetical protein JTY_1336 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260186240|ref|ZP_05763714.1| hypothetical protein MtubCP_09458 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200354|ref|ZP_05767845.1| hypothetical protein MtubT4_09548 [Mycobacterium tuberculosis T46]
 gi|260204559|ref|ZP_05772050.1| hypothetical protein MtubK8_09663 [Mycobacterium tuberculosis K85]
 gi|289442740|ref|ZP_06432484.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T46]
 gi|289446896|ref|ZP_06436640.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           CPHL_A]
 gi|289573964|ref|ZP_06454191.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis K85]
 gi|289749855|ref|ZP_06509233.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|31618083|emb|CAD94194.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121492877|emb|CAL71348.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224772818|dbj|BAH25624.1| hypothetical protein JTY_1336 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289415659|gb|EFD12899.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis T46]
 gi|289419854|gb|EFD17055.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           CPHL_A]
 gi|289538395|gb|EFD42973.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis K85]
 gi|289690442|gb|EFD57871.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
          Length = 217

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 5/202 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +  A   + AG  + +PT+TVYG+  D+ + +A+  L   K R    P+   V    
Sbjct: 14  SRGIVSAVGAIKAGQLVVMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++    S+   +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 74  TIEGLVYSMPDGARELIRAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG     + +    S +   + + +D G S+    STIV++    
Sbjct: 132 LLREVGPMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGAT 190

Query: 188 KVRILRPGGLEIETLKRAISVE 209
             R+LR G +  E +   + V+
Sbjct: 191 P-RVLRQGPVSTERIAEVLGVD 211


>gi|257452399|ref|ZP_05617698.1| SUA5 protein [Fusobacterium sp. 3_1_5R]
 gi|317058942|ref|ZP_07923427.1| SUA5 protein [Fusobacterium sp. 3_1_5R]
 gi|313684618|gb|EFS21453.1| SUA5 protein [Fusobacterium sp. 3_1_5R]
          Length = 202

 Score =  178 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 8/199 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E +  G  I  PT+TVYG+    ++  A+  LY+ K R   +PLI  V  +  + +
Sbjct: 6   QEIGEQIKKGALIIYPTDTVYGIGASIQSEEALIHLYQAKSRNFSSPLIALVDSVERISE 65

Query: 73  HASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            A V+    L   L++ FWPG LT++L   +   +  +  +   T   R+P       +I
Sbjct: 66  IAYVERKKELLEKLSQKFWPGGLTIILP--AKDCVPKIMISGGNTVGVRIPNHEMALSII 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G  L   SAN SG+ + ++ +  LS +I +   ++IDGG+  +G  STI++   +  
Sbjct: 124 RASGGILPTTSANISGEATPSSYQE-LSEAIKRNADIVIDGGVCPVGEASTILDFTKD-S 181

Query: 189 VRILRPGGLEIETLKRAIS 207
           ++ILR G +  E ++  I 
Sbjct: 182 IQILRLGAITKEEIEAVIG 200


>gi|254506994|ref|ZP_05119132.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus 16]
 gi|219549989|gb|EED26976.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus 16]
          Length = 206

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 3/182 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDEKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  +  KT   RVP       L
Sbjct: 74  ELSLYARVDNSAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   +  I++GG       +T+V+   + 
Sbjct: 133 LEALGEPLMSTSLILPGNDYTESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVVDFSDDD 191

Query: 188 KV 189
            V
Sbjct: 192 PV 193


>gi|189424902|ref|YP_001952079.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ]
 gi|189421161|gb|ACD95559.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter lovleyi SZ]
          Length = 203

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L  G  +A PT+T YGL     N   + R+Y++K+R    P     SD+S
Sbjct: 12  PRQIAQVVDCLKNGGIVAYPTDTTYGLGCSIFNKKGLERIYQVKQRDKRKPFSFICSDLS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++A +   +  + K + PGP T VL+  ++ ++  L     KT   R+P       +
Sbjct: 72  EVSRYARLTNHAFKIMKRYLPGPYTFVLE--ASREVPDLLITKQKTVGIRMPDNAICLSI 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   SAN SG+         ++      + L++DGG+    + S++V++   K
Sbjct: 130 VQGLGVPIVTTSANLSGED-PVGDPLEINRLFGHALDLVVDGGLLTTDV-SSVVSL-VGK 186

Query: 188 KVRILRPGGLEIETL 202
           +  +LR G  ++  L
Sbjct: 187 EPELLREGAGDLSWL 201


>gi|283785438|ref|YP_003365303.1| hypothetical protein ROD_17371 [Citrobacter rodentium ICC168]
 gi|282948892|emb|CBG88494.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 206

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP      +L
Sbjct: 74  DLSTYSFVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LAALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|85859579|ref|YP_461781.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB]
 gi|85722670|gb|ABC77613.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophus aciditrophicus SB]
          Length = 202

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 6/194 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++K  E L  G  +  PT+TVYGL  +  N   I ++YEIKKR    PL    +D+ 
Sbjct: 12  TRLIKKVAEILRDGGIVIYPTDTVYGLGCNLFNKKGIEKIYEIKKRNKKQPLSFICADLK 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + K+A V      + K   PGP T +L   ++  +  +     +T   RVP       L
Sbjct: 72  DISKYAQVTDFGYRIMKRHLPGPYTFILQ--ASRLVPKIILPKRQTTGIRVPDNRICMAL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   S   +      N    + S     + +II+GGI      STIV++  + 
Sbjct: 130 VAELGQPIISTSVKAADD-RYLNDPEEIESIFKHHVDVIINGGIIAA-EPSTIVSLI-DD 186

Query: 188 KVRILRPGGLEIET 201
            V +LR G  +   
Sbjct: 187 TVEVLRIGKGDASE 200


>gi|255532909|ref|YP_003093281.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
 gi|255345893|gb|ACU05219.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
          Length = 206

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 87/197 (44%), Gaps = 8/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +  A+ +  + L  G  I  PT+TVYGL  D  N  AI ++  ++  +P         SD
Sbjct: 11  NPKAIEQIVDVLKKGGLIIYPTDTVYGLGCDITNQKAIEKICRLRGIKPEKANFSFICSD 70

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  +      +D  +  + K   PGP T +L+  +  ++  L ++N KT   RVP     
Sbjct: 71  LRHISDFIKPIDTATFRVLKKALPGPFTFILN--ANNNVPKLLSSNKKTVGIRVPDNDIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++++   G+P+   S     + I  +    ++       + ++IDGG       ST+V+ 
Sbjct: 129 REIVRQLGNPILSTSIRDDDEVIEYSTDPELIHEKYENTVDMVIDGGFGD-NEASTVVDC 187

Query: 184 QCEKKVRILRPGGLEIE 200
                  I+R G  +++
Sbjct: 188 TSGD-FEIIREGKGDLD 203


>gi|170768140|ref|ZP_02902593.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627]
 gi|170122906|gb|EDS91837.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627]
          Length = 218

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 26  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 85

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 86  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 144

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++    
Sbjct: 145 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDNT 203

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 204 PV-VVREG 210


>gi|183984067|ref|YP_001852358.1| hypothetical protein MMAR_4096 [Mycobacterium marinum M]
 gi|183177393|gb|ACC42503.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 216

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 6/202 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           SN +  A   L AG  + +PT+TVYG+  D+ +  A+  L   K R    P+   V    
Sbjct: 14  SNGIASAAGALKAGRLVVMPTDTVYGIGADAFDSAAVNALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++    S+   +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 74  TIEGLVFSMPAGARELIRAFWPGALSLVVVQAPSLQW--DLGNAHGTVMLRMPLHPVAIE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SGQ    +V     +     + + +DGG +     STIV++    
Sbjct: 132 LLRQVGPMAVSSANVSGQPPAVDVADA-RNQFGDLVDVYLDGGPAAQQAASTIVDLTGA- 189

Query: 188 KVRILRPGGLEIETLKRAISVE 209
             RILRPG +  E +   + V+
Sbjct: 190 -PRILRPGPVSAERIADVLGVD 210


>gi|256820827|ref|YP_003142106.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea DSM
           7271]
 gi|256582410|gb|ACU93545.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea DSM
           7271]
          Length = 206

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 9/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   + +  E L  G  I  PT+TVYGL  D  N  A+ ++  IK             SD
Sbjct: 13  NEKDINRVVEVLRRGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVCSD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  +  +   +D  +  L K   PGP T ++   +     P      KT   RVP     
Sbjct: 73  LKNLSDYVKQIDTSTFKLLKRTLPGPYTFIMQGNNNL---PKDFKKKKTVGIRVPDNLIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + ++E  G+P+   S       I  T    ++      ++ L+IDGG     + ST++++
Sbjct: 130 RTIVEKLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNKVDLVIDGGYGD-NVASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
             +   ++LR G  +I  +
Sbjct: 189 SGDAP-KVLREGKGDISII 206


>gi|283832908|ref|ZP_06352649.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220]
 gi|291071513|gb|EFE09622.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220]
          Length = 206

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|118467540|ref|YP_889200.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium smegmatis str.
           MC2 155]
 gi|118168827|gb|ABK69723.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium smegmatis str.
           MC2 155]
          Length = 221

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 9/218 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q+    D+      +  A   +  G  + +PT+TVYG+  D+ +  A+  L   K R   
Sbjct: 3   QLFDCADAEQRAIGIASAVSAVKGGRLVVMPTDTVYGIGADAFDSGAVGALLAAKGRGRD 62

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V   + +     SV   +  L + FWPG L+LV+    +       T    +  
Sbjct: 63  MPVGVLVGSWTTIDGLVYSVPRAARELIRAFWPGALSLVVHQAPSLQWDLGDT--RGSVM 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SG+ +           +   + + +DGG ++   
Sbjct: 121 LRMPLHPVAIELLREVGPMAVSSANISGRPAAGTATEA-REQLGDLVEVYLDGGPAEQQA 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
            STIV++      RILR G +  E + R + VE+    
Sbjct: 180 ASTIVDLTGSDP-RILRTGPISAEDVARVLDVEVATLT 216


>gi|157145596|ref|YP_001452915.1| hypothetical protein CKO_01342 [Citrobacter koseri ATCC BAA-895]
 gi|157082801|gb|ABV12479.1| hypothetical protein CKO_01342 [Citrobacter koseri ATCC BAA-895]
          Length = 206

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKDVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|157118653|ref|XP_001659198.1| hypothetical protein AaeL_AAEL001412 [Aedes aegypti]
 gi|108883260|gb|EAT47485.1| conserved hypothetical protein [Aedes aegypti]
          Length = 251

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 8/206 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++  +D+ A+R+A   L++G  IA+PT+TVYGLA  + +P AI+RLY IK R    P+  
Sbjct: 38  VIKSSDNKAIRQAANLLESGKVIALPTDTVYGLACSANDPKAIQRLYAIKGREEKKPVAI 97

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V+D + ++     + L   L +   PGP+T+V+      D +P     ++    R+P  
Sbjct: 98  CVADFNDLRHWGQANHLPNELLEQLLPGPVTIVVRKSVHLD-NPFLNPGVEKIGIRIPDF 156

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177
            F + +   +  P+A+ SANRS + S  NV       +   +  + DGG   +  E    
Sbjct: 157 DFIRDVSRAFRFPVALTSANRSSEQSTLNVGE--FEKLWPALGAVFDGGQLGLREEQRAA 214

Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203
           ST++++    + +I+R G     T++
Sbjct: 215 STVIDLSQVGQYKIIRKGVAIEHTVR 240


>gi|325528913|gb|EGD05947.1| putative translation factor [Burkholderia sp. TJI49]
          Length = 195

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 12/175 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-S 80
           G  +A PTETVYGL  D+ NP A+ R+Y  K RPA +P+I H+             P  +
Sbjct: 24  GQLVAFPTETVYGLGGDAANPEAVARIYAAKGRPANHPVIVHLPPGGDPGYWVDALPADA 83

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-------GH 133
             L   FWPGPLTL+L       I    +    +   R P     + +            
Sbjct: 84  QKLIDAFWPGPLTLILKRHP--RIPDAVSGGQDSVGLRCPSHPVAQALLAAFSARRGGHG 141

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            +A PSANR G +S T  +H+       +   ++DGG S++G+ESTIV++     
Sbjct: 142 GVAAPSANRFGHVSPTTAQHVRDEF--GDTVHVLDGGASEVGIESTIVDLSRGFP 194


>gi|323356868|ref|YP_004223264.1| translation factor (SUA5) [Microbacterium testaceum StLB037]
 gi|323273239|dbj|BAJ73384.1| putative translation factor (SUA5) [Microbacterium testaceum
           StLB037]
          Length = 253

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 11/209 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +R A + +  G  + +PT+TVYG+A D+ N  A+  L E K R    P    V+ +  
Sbjct: 15  SGMRHARQAIGRGELVVLPTDTVYGIAADAFNARAVAGLLEAKGRGRQQPPPVLVAGVGT 74

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           ++   +  P ++  L + FWPG LT+VL    +  +         T   R+P    T +L
Sbjct: 75  LRALVAEIPAAVDDLVREFWPGGLTIVLPAQPS--LSWDLGDTHGTVAVRMPAHHLTLEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-- 185
           +E  G PLA+ SAN +G  +  ++       +   +   +D G S+ G+ STIV+     
Sbjct: 133 LEETG-PLAVSSANLTGMAAAVDIDSA-RDMLGDSVSAYLDSGPSETGIASTIVDATTLV 190

Query: 186 ---EKKVRILRPGGLEIETLKRAISVELE 211
              E +VR+LR G +  E L+  +   LE
Sbjct: 191 GGAEPRVRVLREGAVSRERLREVLGDLLE 219


>gi|257466268|ref|ZP_05630579.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917425|ref|ZP_07913665.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691300|gb|EFS28135.1| SUA5 protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 202

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 8/199 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E +  G  I  PT+TVYG+    ++  A+  LY+ K R   +PLI  V  +  + +
Sbjct: 6   QEIGEQIKKGALIIYPTDTVYGIGASIQSEEALIHLYQAKSRNFSSPLIALVDSVERISE 65

Query: 73  HASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            A V+    L   L++ FWPG LT++L   +   +  +  +   T   R+P       +I
Sbjct: 66  IAYVERKKELLEKLSQKFWPGGLTIILP--AKDCVPKIMISGGNTVGVRIPNHEMALSII 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G  L   SAN SG+ + ++ +  LS +I +   ++IDGG+  +G  STI++   +  
Sbjct: 124 RAAGGILPTTSANISGEATPSSYQE-LSEAIKRNADIVIDGGVCPVGEASTILDFTKD-S 181

Query: 189 VRILRPGGLEIETLKRAIS 207
           ++ILR G +  E ++  I 
Sbjct: 182 IQILRLGAITKEEIEAVIG 200


>gi|314966528|gb|EFT10627.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL082PA2]
 gi|315092952|gb|EFT64928.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL060PA1]
 gi|327327352|gb|EGE69128.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL103PA1]
          Length = 290

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 58  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGKTNG--TLAVRVPDQDQTRE 175

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 235 DGKVVRQGALSLEAIHEV 252


>gi|62180287|ref|YP_216704.1| hypothetical protein SC1717 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127920|gb|AAX65623.1| putative translation factor [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322714761|gb|EFZ06332.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 206

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++T G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|118619167|ref|YP_907499.1| hypothetical protein MUL_3963 [Mycobacterium ulcerans Agy99]
 gi|118571277|gb|ABL06028.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 216

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 6/202 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           SN +  A   L AG  + +PT+TVYG+  D+ +  A+  L   K R    P+   V    
Sbjct: 14  SNGIASAAGALKAGRLVVMPTDTVYGIGADAFDSAAVNALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++    S+   +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 74  TIEGLVFSMPAGARELIRAFWPGALSLVVVQAPSLQW--DLGNAHGTVMLRMPLHPVAIE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SGQ    +V     +     + + +DGG +     STIV++    
Sbjct: 132 LLRQVGPMAVSSANVSGQPPAVDVADA-RNQFGDLVDVYLDGGPAAQQAASTIVDLTGA- 189

Query: 188 KVRILRPGGLEIETLKRAISVE 209
             RILRPG +  E +   + V+
Sbjct: 190 -PRILRPGPVSAERIADVLGVD 210


>gi|237806935|ref|YP_002891375.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187]
 gi|237499196|gb|ACQ91789.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187]
          Length = 186

 Score =  177 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 7/187 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L++AC+ L +G  IA  TE V+GL  D  N TA+ +L +IK+RP    LI   +   
Sbjct: 2   TENLQQACQILRSGGVIAYATEAVFGLGCDPDNETAVHKLLQIKQRPIEKGLILIAASWE 61

Query: 69  MVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            +  +  V       L  A+  WPGP T V    +        T    +   R+      
Sbjct: 62  QLAPYLDVSLLTEEQLQRAQKSWPGPYTWVFP--AKISTPKWLTGQFSSLAVRISAHPQV 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   YG P+   SAN +       V+ +  S +   I  I+ G + K    S I +V 
Sbjct: 120 QALCLMYGKPMVSTSANLTSLPPCRTVEDV-RSQLTGRIDYILPGDVGKQTNPSEIRDVI 178

Query: 185 CEKKVRI 191
             + +R 
Sbjct: 179 TNQLIRA 185


>gi|311746055|ref|ZP_07719840.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
 gi|126576272|gb|EAZ80550.1| Sua5/YciO/YrdC/YwlC family protein [Algoriphagus sp. PR1]
          Length = 209

 Score =  177 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 8/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSD 66
           D   +R+    L  G  +  PT+TVYGL  D  N  A+ R+  IK   P  +      +D
Sbjct: 14  DPKKIREIAALLRDGAVVIYPTDTVYGLGCDITNTRAVERICRIKGINPRKHNFSFVCAD 73

Query: 67  ISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
           +S +  +  V       + K   PGP T +L+  + T +  +  +  KT   RVP     
Sbjct: 74  LSTISHYTRVITKPVFKMMKKALPGPYTFILE--ANTQVPKILHSKKKTVGIRVPDHKVP 131

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + L+E  G PL   S     ++   +    ++       + ++I GG  +  + ST+++ 
Sbjct: 132 RMLVEELGQPLLSTSIRDEDEVLEYSTDPELIFEKYEHLVDVVIHGGFGQ-NIGSTVLDC 190

Query: 184 QCEKKVRILRPGGLEIETL 202
               ++ I+R G   +E +
Sbjct: 191 TG-HEMEIIREGLGNVEEI 208


>gi|313764218|gb|EFS35582.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL013PA1]
 gi|313812713|gb|EFS50427.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL025PA1]
 gi|313816311|gb|EFS54025.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL059PA1]
 gi|313827395|gb|EFS65109.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL063PA2]
 gi|314915696|gb|EFS79527.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA4]
 gi|314917935|gb|EFS81766.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA1]
 gi|314920318|gb|EFS84149.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA3]
 gi|314931538|gb|EFS95369.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL067PA1]
 gi|314955549|gb|EFS99952.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL027PA1]
 gi|314957923|gb|EFT02026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA1]
 gi|314967571|gb|EFT11670.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA1]
 gi|315098769|gb|EFT70745.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL059PA2]
 gi|315101461|gb|EFT73437.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL046PA1]
 gi|315108753|gb|EFT80729.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL030PA2]
 gi|327450547|gb|EGE97201.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA3]
 gi|327454114|gb|EGF00769.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL083PA2]
 gi|328753197|gb|EGF66813.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL025PA2]
 gi|328753964|gb|EGF67580.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA1]
          Length = 290

 Score =  177 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 58  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 235 DGKVVRQGALSLEAIHEV 252


>gi|119715988|ref|YP_922953.1| translation factor SUA5 [Nocardioides sp. JS614]
 gi|119536649|gb|ABL81266.1| translation factor SUA5 [Nocardioides sp. JS614]
          Length = 219

 Score =  177 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 5/190 (2%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SV 76
            +  G  + +PT+TVYG+  D+ +P A+R L   K R    P    VS  + +   A  V
Sbjct: 23  AVQRGELVVLPTDTVYGVGADAFDPAAVRGLLAAKGRGRDLPPPVLVSAATTLDALAVRV 82

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
              +  L + FWPGPLTLV    S+       T    T   R+P     + I     PLA
Sbjct: 83  PGYARALVEAFWPGPLTLVCHQQSSLQWDLGDT--RGTVAVRMPDHDVAREILERTGPLA 140

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           + SAN++G  + T+        +  ++ +I+DGG +  G  STIV+V   +  R+LR G 
Sbjct: 141 VSSANKTGMPAATDADQA-EDMLGDDVAVIVDGGPAPGGEASTIVDVTGAQG-RVLRRGA 198

Query: 197 LEIETLKRAI 206
           L +E L   +
Sbjct: 199 LSLERLNEVL 208


>gi|16760160|ref|NP_455777.1| hypothetical protein STY1330 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765064|ref|NP_460679.1| hypothetical protein STM1720 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142069|ref|NP_805411.1| hypothetical protein t1633 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56413354|ref|YP_150429.1| hypothetical protein SPA1156 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161613790|ref|YP_001587755.1| hypothetical protein SPAB_01524 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167549771|ref|ZP_02343529.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168230159|ref|ZP_02655217.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237773|ref|ZP_02662831.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241299|ref|ZP_02666231.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260058|ref|ZP_02682031.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168462805|ref|ZP_02696736.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819543|ref|ZP_02831543.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443555|ref|YP_002040974.1| hypothetical protein SNSL254_A1847 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451404|ref|YP_002045767.1| hypothetical protein SeHA_C1910 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470175|ref|ZP_03076159.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734510|ref|YP_002114752.1| hypothetical protein SeSA_A1852 [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250623|ref|YP_002146306.1| hypothetical protein SeAg_B1426 [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262994|ref|ZP_03163068.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362278|ref|YP_002141915.1| hypothetical protein SSPA1075 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200390159|ref|ZP_03216770.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927841|ref|ZP_03219042.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207856767|ref|YP_002243418.1| hypothetical protein SEN1313 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213023265|ref|ZP_03337712.1| hypothetical protein Salmonelentericaenterica_12025 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
 gi|213163148|ref|ZP_03348858.1| hypothetical protein Salmoneentericaenterica_25228 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213421198|ref|ZP_03354264.1| hypothetical protein Salmonentericaenterica_27079 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213424437|ref|ZP_03357250.1| hypothetical protein SentesTyphi_01480 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582659|ref|ZP_03364485.1| hypothetical protein SentesTyph_16218 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213619078|ref|ZP_03372904.1| hypothetical protein SentesTyp_22475 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213649102|ref|ZP_03379155.1| hypothetical protein SentesTy_18553 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855224|ref|ZP_03383464.1| hypothetical protein SentesT_14592 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224583788|ref|YP_002637586.1| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238911888|ref|ZP_04655725.1| hypothetical protein SentesTe_12251 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289829088|ref|ZP_06546768.1| hypothetical protein Salmonellentericaenterica_21274 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25319041|pir||AH0653 conserved hypothetical protein STY1330 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420250|gb|AAL20638.1| putative translation factor [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16502454|emb|CAD08411.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137698|gb|AAO69260.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127611|gb|AAV77117.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161363154|gb|ABX66922.1| hypothetical protein SPAB_01524 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402218|gb|ACF62440.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409708|gb|ACF69927.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456539|gb|EDX45378.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710012|gb|ACF89233.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195634421|gb|EDX52773.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093755|emb|CAR59229.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197214326|gb|ACH51723.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241249|gb|EDY23869.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289249|gb|EDY28616.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199602604|gb|EDZ01150.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323183|gb|EDZ08379.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205325048|gb|EDZ12887.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205335546|gb|EDZ22310.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339648|gb|EDZ26412.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343598|gb|EDZ30362.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350954|gb|EDZ37585.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206708570|emb|CAR32891.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224468315|gb|ACN46145.1| hypothetical protein SPC_2009 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246910|emb|CBG24727.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158248|emb|CBW17747.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912713|dbj|BAJ36687.1| hypothetical protein STMDT12_C17440 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085781|emb|CBY95557.1| putative ribosome maturation factor rimN [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224351|gb|EFX49414.1| YciO family [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|323129992|gb|ADX17422.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326623168|gb|EGE29513.1| Uncharacterized protein yciO [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332988609|gb|AEF07592.1| hypothetical protein STMUK_1692 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 206

 Score =  177 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++T G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|50842729|ref|YP_055956.1| SUA5 related protein [Propionibacterium acnes KPA171202]
 gi|50840331|gb|AAT82998.1| SUA5 related protein [Propionibacterium acnes KPA171202]
          Length = 307

 Score =  177 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 75  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 134

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 135 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 192

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 193 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 251

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 252 DGKVVRQGALSLEAIHEV 269


>gi|314923484|gb|EFS87315.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL001PA1]
 gi|315103527|gb|EFT75503.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA2]
          Length = 290

 Score =  177 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 58  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 235 DGKVVRQGALSLEAIHEV 252


>gi|227542626|ref|ZP_03972675.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181824|gb|EEI62796.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 189

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 5/190 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           ++AG  + IPT+TVYG+  ++ NP A+ +L + K R    P+   V     V+  +    
Sbjct: 1   MEAGRLVVIPTDTVYGIGCNAFNPEAVNKLLQAKHRGPDMPVPVLVGSWDTVRGLSRDYT 60

Query: 79  LSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
             ++ L + FWPG L++V+    +   +   T    +   R+P       +     P+A+
Sbjct: 61  RQMNVLIEAFWPGGLSIVVPQAPSLTWNLGDTNG--SVMLRMPLQKLAIELLQKTGPMAV 118

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN SGQ    N +      +   + + ++GG ++IG  STI+++       ILR G +
Sbjct: 119 SSANISGQPPALNAREA-EEQLGNSVSVYLEGGQAEIGTPSTIIDLTQATP-TILREGAI 176

Query: 198 EIETLKRAIS 207
             E +   + 
Sbjct: 177 PSEKIFEVLK 186


>gi|289425314|ref|ZP_06427091.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187]
 gi|289428531|ref|ZP_06430215.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165]
 gi|295130810|ref|YP_003581473.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137]
 gi|289154292|gb|EFD02980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187]
 gi|289158225|gb|EFD06444.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165]
 gi|291376823|gb|ADE00678.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137]
 gi|315077780|gb|EFT49831.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL053PA2]
          Length = 287

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 55  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 114

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 115 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 172

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 173 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 231

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 232 DGKVVRQGALSLEAIHEV 249


>gi|299137093|ref|ZP_07030276.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8]
 gi|298601608|gb|EFI57763.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX8]
          Length = 243

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S  + +  + L++G  +A+PT+T YGLAVD  N  A+ R+Y++K R    PL   ++D+
Sbjct: 43  ESAHIDRVVQHLNSGEVVALPTDTFYGLAVDPVNLRAVDRIYDLKSRARHKPLSLLIADV 102

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +   + A  +D     LA+ FWPGPLT+++   S   +    TAN      RVP     +
Sbjct: 103 AQAYELARGIDTAFDRLAERFWPGPLTIIVKAGSKLPLR--VTANTGNVALRVPEAPICR 160

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            ++   G P+   SAN  G     +    +      +IPLI+DGG +   + +TIV++  
Sbjct: 161 AVVAKLGLPITATSANLRGLPEC-SYAGCVRDQFGDKIPLIVDGGPTSRSMATTIVDLSG 219

Query: 186 EK-KVRILRPGGLEIETLKRAI 206
                 ILR G +    +  A+
Sbjct: 220 GGNSWMILREGAIPTHEIALAL 241


>gi|206575970|ref|YP_002239002.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342]
 gi|288935910|ref|YP_003439969.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella variicola At-22]
 gi|290512944|ref|ZP_06552308.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. 1_1_55]
 gi|206565028|gb|ACI06804.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342]
 gi|288890619|gb|ADC58937.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella variicola At-22]
 gi|289774557|gb|EFD82561.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. 1_1_55]
          Length = 206

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  ARLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYAFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +ET G P+   S    G     +    +   + K + LII GG       +T++++  + 
Sbjct: 133 LETLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGFLGQ-QPTTVIDLTEDT 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|282853792|ref|ZP_06263129.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139]
 gi|282583245|gb|EFB88625.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139]
          Length = 287

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 55  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 114

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 115 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 172

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 173 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 231

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 232 DGKVVRQGALSLEAIHEV 249


>gi|332886163|gb|EGK06407.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas mossii DSM 22836]
          Length = 202

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 10/196 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSD 66
           +   + +    L  G  I  PT+TVY +  D+ N  A+  + ++K   PA + L     D
Sbjct: 11  NQKEIDRVVSVLQDGGLIIYPTDTVYAIGCDALNVRAVEEICKMKDINPAKSNLSIICYD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           +S + ++A VD     L K   PGP T +L+  S+    P    N KT   R+P     +
Sbjct: 71  LSNISEYAKVDNAIFKLMKKNLPGPFTFILNTTSSL---PKIYKNKKTVGIRIPDNNIIR 127

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNV 183
           +L+   G+P+   S     + +  T    ++      ++ ++IDGG    G+E ST+V+ 
Sbjct: 128 ELVRNLGNPILTTSVKDEDEVVEYTTDPELIYEKYQDKVDIVIDGGFG--GIEGSTVVDC 185

Query: 184 QCEKKVRILRPGGLEI 199
             ++   I+R G  E+
Sbjct: 186 TSDEP-EIIRQGKGEL 200


>gi|110637486|ref|YP_677693.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406]
 gi|110280167|gb|ABG58353.1| translation factor SUA5 [Cytophaga hutchinsonii ATCC 33406]
          Length = 208

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 8/197 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDIS 68
           N +  A E +  G  +  PT+TVY +  D  N  A+ R+  +K  +P    L     D+S
Sbjct: 16  NKILTAVEIIRKGGIVIYPTDTVYAIGCDIHNQKAVERVCRLKNIQPGKINLSFICQDLS 75

Query: 69  MVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + ++    P     + K   PGP T +L+  +  ++  +     KT   RVP     + 
Sbjct: 76  HISEYTKALPTQVFKVMKQVLPGPYTFILN--ANNNVPNILNTKKKTIGIRVPDNRIVQL 133

Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L++  G+P+   S     +I   T     +       + +IIDGG       STI++   
Sbjct: 134 LLKELGNPILSTSIKNEDEILEYTTDPEEIYERYKNVVDVIIDGGFGG-NEASTILDCTG 192

Query: 186 EKKVRILRPGGLEIETL 202
            + + ++R G   IE L
Sbjct: 193 NE-IEVIREGKGSIEEL 208


>gi|260768729|ref|ZP_05877663.1| YrdC family protein [Vibrio furnissii CIP 102972]
 gi|260616759|gb|EEX41944.1| YrdC family protein [Vibrio furnissii CIP 102972]
 gi|315180432|gb|ADT87346.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio furnissii NCTC 11218]
          Length = 206

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKHALERICQIRRLDDKHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPNNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G  +  +    +   +   + +I++GG       +T+V+   + 
Sbjct: 133 LEAMGEPLMSTSLILPGNETTESDPEEIRDRLEHAVDVILNGGYLGE-QPTTVVDF-SDD 190

Query: 188 KVRILRPGG 196
           +++++R G 
Sbjct: 191 EMQVVRFGA 199


>gi|257464356|ref|ZP_05628733.1| SUA5 protein [Fusobacterium sp. D12]
 gi|317061861|ref|ZP_07926346.1| SUA5 protein [Fusobacterium sp. D12]
 gi|313687537|gb|EFS24372.1| SUA5 protein [Fusobacterium sp. D12]
          Length = 202

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 8/199 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E +  G  I  PT+TVYG+A   ++  A+  LY+ K R   +PLI  V  +  + +
Sbjct: 6   KEIGEQVKKGALIIYPTDTVYGIAASMQSEEALIHLYQAKSRNFSSPLIALVDSVERISE 65

Query: 73  HASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
            A +D        L+K FWPG LT++L   +   +  +  +   T   R+P      ++I
Sbjct: 66  IAYIDNKKEELETLSKAFWPGGLTVILP--AKDCVPKIMISGGNTVGVRIPNHKMALEII 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G  L   SAN SG+ + ++ +  LS +I ++  ++IDGG+  +G  STI++   +  
Sbjct: 124 RAAGGILPTTSANISGEATPSSYQE-LSEAIKQKADIVIDGGVCPVGEASTILDFTKD-S 181

Query: 189 VRILRPGGLEIETLKRAIS 207
           ++ILR G +  E ++  I 
Sbjct: 182 LQILRLGAITKEEIEAVIG 200


>gi|314981453|gb|EFT25547.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA3]
 gi|315092117|gb|EFT64093.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA4]
          Length = 290

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 58  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 235 DGKVVRQGALSLEAIHEV 252


>gi|313772060|gb|EFS38026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL074PA1]
 gi|313791910|gb|EFS40011.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA1]
 gi|313801608|gb|EFS42848.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA2]
 gi|313810260|gb|EFS47981.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL083PA1]
 gi|313818788|gb|EFS56502.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL046PA2]
 gi|313820560|gb|EFS58274.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA1]
 gi|313822635|gb|EFS60349.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA2]
 gi|313825432|gb|EFS63146.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL063PA1]
 gi|313830590|gb|EFS68304.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL007PA1]
 gi|313833626|gb|EFS71340.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL056PA1]
 gi|313838321|gb|EFS76035.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL086PA1]
 gi|314924925|gb|EFS88756.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA3]
 gi|314960550|gb|EFT04652.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA2]
 gi|314962566|gb|EFT06666.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL082PA1]
 gi|314973591|gb|EFT17687.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL053PA1]
 gi|314975813|gb|EFT19908.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL045PA1]
 gi|314978721|gb|EFT22815.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL072PA2]
 gi|314983708|gb|EFT27800.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA1]
 gi|314987889|gb|EFT31980.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA2]
 gi|314989700|gb|EFT33791.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA3]
 gi|315080407|gb|EFT52383.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL078PA1]
 gi|315084736|gb|EFT56712.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL027PA2]
 gi|315085420|gb|EFT57396.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA3]
 gi|315088522|gb|EFT60498.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL072PA1]
 gi|315095864|gb|EFT67840.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL038PA1]
 gi|315105834|gb|EFT77810.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL030PA1]
 gi|327326416|gb|EGE68206.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL096PA2]
 gi|327443485|gb|EGE90139.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL013PA2]
 gi|327445688|gb|EGE92342.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL043PA2]
 gi|327448328|gb|EGE94982.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL043PA1]
 gi|327453371|gb|EGF00026.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL092PA1]
 gi|328754697|gb|EGF68313.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL020PA1]
 gi|328760893|gb|EGF74458.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL099PA1]
          Length = 290

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 58  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 235 DGKVVRQGALSLEAIHEV 252


>gi|152969813|ref|YP_001334922.1| hypothetical protein KPN_01259 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238894321|ref|YP_002919055.1| hypothetical protein KP1_2300 [Klebsiella pneumoniae NTUH-K2044]
 gi|262043011|ref|ZP_06016154.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330002627|ref|ZP_08304382.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3]
 gi|150954662|gb|ABR76692.1| hypothetical protein KPN_01259 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546637|dbj|BAH62988.1| hypothetical protein KP1_2300 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039613|gb|EEW40741.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537247|gb|EGF63508.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3]
          Length = 206

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  ARLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYAFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +ET G P+   S    G     +    +   + K + LII GG       +T++++  + 
Sbjct: 133 LETLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGFLGQ-QPTTVIDLTEDT 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|317125566|ref|YP_004099678.1| translation factor SUA5 [Intrasporangium calvum DSM 43043]
 gi|315589654|gb|ADU48951.1| translation factor SUA5 [Intrasporangium calvum DSM 43043]
          Length = 255

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 5/198 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           +  G  + +PT+TVYG+  D+ +  A+  +   K R    P    +         A  V 
Sbjct: 24  IRTGRLVVLPTDTVYGVGCDAFDAEAVGAVLAAKGRGRDMPPPVLIPTPRTAHGLATQVP 83

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
             +  L + FWPGPLTLVL   S+  +H        T   RVP       +     P+A+
Sbjct: 84  DYAQRLMERFWPGPLTLVLKAQSS--LHWDLGETNGTVALRVPDNEVALELLRDIGPMAV 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN +G  +   V       + + + + +DGG S     STI++   ++  R LR G L
Sbjct: 142 TSANSTGAPAARTVDEA-EGMLGESVAVYLDGGPSTDAAPSTIIDCTGDEP-RTLRLGAL 199

Query: 198 EIETLKRAISVELEYCVD 215
               +   ++      VD
Sbjct: 200 SQSEIDAVLATGAAPEVD 217


>gi|315224006|ref|ZP_07865847.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287]
 gi|314945977|gb|EFS97985.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287]
          Length = 206

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 9/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   + +  E L  G  I  PT+TVYGL  D  N  A+ ++  IK              D
Sbjct: 13  NEKDINRVVEVLRRGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVCPD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  +  +   +D  +  L K   PGP T ++   +     P      KT   RVP     
Sbjct: 73  LKNLSDYVKQIDTSTFKLLKRTLPGPYTFIMQGNNNL---PKDFKKKKTVGIRVPDNLIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + ++E  G+P+   S       I  T    ++      ++ L+IDGG     + ST++++
Sbjct: 130 RTIVEKLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNKVDLVIDGGYGD-NVASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
             +  V +LR G  +I+
Sbjct: 189 SGDAPV-VLREGKGDID 204


>gi|256419763|ref|YP_003120416.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588]
 gi|256034671|gb|ACU58215.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588]
          Length = 205

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 7/198 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSD 66
           +   L+   E L  G  I  PT+TVYG+  D   P A+ R+  IK   PA         D
Sbjct: 11  NPRHLKTIVECLKDGGVIIYPTDTVYGMGCDICQPKAVERICRIKHINPAKAQFSFICYD 70

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           +S +  +A  VD  +  + K   PGP T +L   ++  +  L      T   RVP    +
Sbjct: 71  LSHLSDYAKSVDTPTFRMLKKALPGPYTFILS--ASRAVPRLLKQKKDTVGIRVPDNNIS 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + +++  G+P+   S      +       I+       + +++DGGI  +   ST+V+  
Sbjct: 129 RAIVKELGNPILSTSLPIETYVEEYTDPEIIHEKFGSIVDIVVDGGIGGMTF-STVVDCT 187

Query: 185 CEKKVRILRPGGLEIETL 202
            ++   ++R G    E L
Sbjct: 188 GDEP-ELIREGAGSWEEL 204


>gi|269962637|ref|ZP_06176982.1| Sua5/YciO/YrdC family protein [Vibrio harveyi 1DA3]
 gi|269832560|gb|EEZ86674.1| Sua5/YciO/YrdC family protein [Vibrio harveyi 1DA3]
          Length = 186

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +  E L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 3   DNFEQVLEALQKGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 62

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+          WPGP T ++   ++  +    +    +   RV      +
Sbjct: 63  LLPYVDESQLTQEQLDKVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQ 120

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+   +G PL   SAN +G       K +    +   +  I+ G  S     S I + + 
Sbjct: 121 KMCNAFGKPLTSTSANLTGLPPCMTTKEV-EEQLGGRLVAILRGETSGRDKPSEIRDAKT 179

Query: 186 EKKVR 190
            + +R
Sbjct: 180 SQILR 184


>gi|327331709|gb|EGE73446.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL096PA3]
          Length = 290

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 58  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 117

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 235 DGKVVRQGALSLEAIHEV 252


>gi|149190890|ref|ZP_01869153.1| hypothetical protein VSAK1_01032 [Vibrio shilonii AK1]
 gi|148835245|gb|EDL52219.1| hypothetical protein VSAK1_01032 [Vibrio shilonii AK1]
          Length = 206

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  I  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIVRNGGVIIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNPKRKTIGIRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   +  I++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTSLILPGNEVTESDPEEIRDQLEHAVDCILNGGYLGE-QPTTVIDF-SDD 190

Query: 188 KVRILRPGG 196
           + ++LR G 
Sbjct: 191 EAKVLRTGA 199


>gi|332675654|gb|AEE72470.1| SUA5 related protein [Propionibacterium acnes 266]
          Length = 280

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 48  EDALEQAADAIADGECIVLPTDTVYGIGADALNALAVQRLLNAKERGRDMPPPVLVSDSV 107

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 108 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 165

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 166 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 224

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 225 DGKVVRQGALSLEAIHEV 242


>gi|313807751|gb|EFS46238.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA2]
          Length = 290

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +AL +A + +  G  I +PT+TVYG+  D+ N  A++RL   K+R    P    VSD  
Sbjct: 58  EDALEQAADAIADGECIVLPTDTVYGIGADALNTLAVQRLLNAKERGRDMPPPVLVSDSV 117

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  LA+ +WPG LTLVL    +  +    T    T   RVP     + 
Sbjct: 118 ALPALCQHIPAGAKALAEKYWPGGLTLVLRAQESLGMDLGETNG--TLAVRVPDQDQTRE 175

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN+SG  +    +   +  +  E+ + +D G S++G  STI++     
Sbjct: 176 LLRMTGPLAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGESSTIIDFVSTT 234

Query: 188 KVRILRPGGLEIETLKRA 205
             +++R G L +E +   
Sbjct: 235 DGKVVRQGALSLEAIHEV 252


>gi|260776102|ref|ZP_05884997.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607325|gb|EEX33590.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 206

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 76/196 (38%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVIYPTDSGYALGCQLENKQALERICKIRRLDEKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  +  KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   +  I++GG       +T+V+   ++
Sbjct: 133 LEALGEPLMSTSLILPGNDVTESDPEEIRDKLEHAVDCILNGGYLGE-QPTTVVDFSDDE 191

Query: 188 KVRILRPGGLEIETLK 203
            V I R G  +    +
Sbjct: 192 PV-IARVGSGDPAAFE 206


>gi|323526589|ref|YP_004228742.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001]
 gi|323383591|gb|ADX55682.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1001]
          Length = 211

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S
Sbjct: 14  PRLVKQAVQIINDGGVVALPTDSSYALACHLDDKNAVERLRRIRGLDEKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          LS  + KT   RVP    T  +
Sbjct: 74  ELANFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G+ +  N    + + + K++ L+IDGG   +   ST++++  ++
Sbjct: 133 LGELGQPLLGSSLILPGETAPLNDPEDIRARLEKQLDLVIDGGAC-VCEPSTVIDLTGDE 191

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 192 PVLVRAGRG 200


>gi|330897267|gb|EGH28686.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 209

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI      ST++N+  E
Sbjct: 132 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGFS-ASTVINL-AE 189

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 190 GEPQIVRVGC 199


>gi|300789603|ref|YP_003769894.1| SUA5/YciO/YrdC/YwlC family protein [Amycolatopsis mediterranei U32]
 gi|299799117|gb|ADJ49492.1| SUA5/YciO/YrdC/YwlC family protein [Amycolatopsis mediterranei U32]
          Length = 216

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           + +   + +PT+TVYG+  D+ +  A++ L   K R    P+   V   S V      V 
Sbjct: 24  VRSSRLVVLPTDTVYGIGADAFDAGAVQALLRAKNRGPDMPVGVLVGSWSTVDGLVLGVP 83

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
           P +  L + FWPG L++VL    +   +        T   R+P       +     P+A+
Sbjct: 84  PQARALIEAFWPGDLSIVLPHAPSLQWN--LGDARGTVMLRMPLHPVALELLRDVGPMAV 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN SG+   +  +      +   + + +DGG S   + S+IV++   + V +LR G +
Sbjct: 142 SSANVSGRPPASTAQEA-QEQLGDSVAVYLDGGSSGEAVASSIVDLTGTEPV-VLREGAV 199

Query: 198 EIETLKRAISVELEYCV 214
             E +   + V  E   
Sbjct: 200 GKEAIAEVLGVPAESLA 216


>gi|325103134|ref|YP_004272788.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter saltans DSM 12145]
 gi|324971982|gb|ADY50966.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter saltans DSM 12145]
          Length = 206

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 8/198 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +   +++  + L  G  I  PT+T+YG+  D  N  AI ++ ++K  +P          D
Sbjct: 11  NEKQVQQVVDILKKGGIIIYPTDTIYGMGCDITNQKAIEKIAQLKGIKPEKANFSFVCHD 70

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           +S + ++   +D  +  L K   PG  T + +  + +++  L  +  KT   RVP     
Sbjct: 71  LSHISQYVKPLDNSTFRLLKKALPGAFTFIFE--ANSNVPKLLASKKKTVGIRVPDNNIA 128

Query: 125 KKLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++++   G+P+   S     +I   +    ++       + +++DGG     + ST+V+ 
Sbjct: 129 REIVRMLGNPILSTSIRDDDEIIEYSTDPELIYEKYKDLVDVVVDGGYGN-NVASTVVDC 187

Query: 184 QCEKKVRILRPGGLEIET 201
             E    I+R G   +E 
Sbjct: 188 T-EGDFEIVRQGLGNLEE 204


>gi|325519096|gb|EGC98583.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. TJI49]
          Length = 210

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAVEIVNKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +          N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LEALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGALE 203


>gi|237731719|ref|ZP_04562200.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907258|gb|EEH93176.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 206

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K + LII GG       +T++++  + 
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKLVDLIIHGGYLGQ-QPTTVIDLTDDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|296102093|ref|YP_003612239.1| hypothetical protein ECL_01732 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295056552|gb|ADF61290.1| hypothetical protein ECL_01732 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 206

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  PRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKAAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +ET G P+   S    G     +    +   + K + LII GG       +T+V++  + 
Sbjct: 133 LETLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGYLGQ-QPTTVVDLTEDA 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-EVIREG 198


>gi|91228667|ref|ZP_01262582.1| putative translation factor [Vibrio alginolyticus 12G01]
 gi|254230518|ref|ZP_04923890.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio sp. Ex25]
 gi|262393862|ref|YP_003285716.1| YrdC family protein [Vibrio sp. Ex25]
 gi|269967048|ref|ZP_06181116.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91187788|gb|EAS74105.1| putative translation factor [Vibrio alginolyticus 12G01]
 gi|151936966|gb|EDN55852.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio sp. Ex25]
 gi|262337456|gb|ACY51251.1| YrdC family protein [Vibrio sp. Ex25]
 gi|269828307|gb|EEZ82573.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 206

 Score =  176 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNSAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   +   + +I++GG       +T+++    +
Sbjct: 133 LEALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDFSEGE 191

Query: 188 KVRILRPGGLEIETLK 203
            V ++R G  +    +
Sbjct: 192 PV-VVRLGSGDPAPFE 206


>gi|271963196|ref|YP_003337392.1| Sua5_yciO_yrdC, YrdC domain-containing protein [Streptosporangium
           roseum DSM 43021]
 gi|270506371|gb|ACZ84649.1| Sua5_yciO_yrdC, YrdC domain protein [Streptosporangium roseum DSM
           43021]
          Length = 221

 Score =  176 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 5/211 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L  A   +  G  + +PT+TVYG+  D+  P+A+  L E K R    P+   V  + 
Sbjct: 14  AAGLTDAASAVRRGELVVLPTDTVYGIGADAFTPSAVTSLLEAKGRGRDMPVPVLVGTVR 73

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
                   + P    L   FWPGPLTL+    +   +      +  T   R+P       
Sbjct: 74  AANALVENLGPYGQDLVDSFWPGPLTLIC--RANRSLSWDLGDSKGTVAIRMPLHSVALE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SANRSG  +           +   + + +DGG       STI+++    
Sbjct: 132 LLKETGPMAVSSANRSGAPAAITAA-DAEKQLGDSVAVYLDGGPCADDTPSTILDLTTAV 190

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS 218
             R+LR G + +E L+  I         E+ 
Sbjct: 191 P-RLLRRGAVSVEKLRGVIGYVATDAGPESD 220


>gi|258622997|ref|ZP_05718012.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM573]
 gi|258584780|gb|EEW09514.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM573]
          Length = 185

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L++A   L +G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   ++   
Sbjct: 2   DNLQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +   + L+          WP PLT V+   ++            T   RV      +
Sbjct: 62  LRPYIDENQLTADQLAQVLASWPAPLTWVMP--ASIHTPSWVRGQFDTVAVRVSNHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G PL   SAN SGQ + T  + ++ + +  +I  +++G  S     S I + + 
Sbjct: 120 QLCLAFGKPLTSTSANLSGQPACTTQQEVV-AQLGNQIETLLEGKTSGHCGPSEIRDARS 178

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 179 ---LQVLRQG 185


>gi|323497600|ref|ZP_08102617.1| hypothetical protein VISI1226_22275 [Vibrio sinaloensis DSM 21326]
 gi|323317349|gb|EGA70343.1| hypothetical protein VISI1226_22275 [Vibrio sinaloensis DSM 21326]
          Length = 206

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  +  KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNRIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   +   +  I++GG       +T+V+   ++
Sbjct: 133 LEALGEPMMSTSLILPGNDYTESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVVDFSEDE 191

Query: 188 KVRILRPGGLEIETLK 203
            V I R G  +    +
Sbjct: 192 PV-IARVGAGDPAPFE 206


>gi|167837135|ref|ZP_02464018.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           MSMB43]
          Length = 209

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  TRLVKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +   S      N    + + + K+I L+IDGG       ST++++  ++
Sbjct: 133 LEALGQPLLGTTLILSPDDEPLNDPEEIRARLEKQIDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGPLE 203


>gi|300781420|ref|ZP_07091274.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium genitalium ATCC
           33030]
 gi|300533127|gb|EFK54188.1| Sua5/YciO/YrdC/YwlC family protein [Corynebacterium genitalium ATCC
           33030]
          Length = 221

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 5/204 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A     AG  + IPT+TVYG+  D+ NP A  +L   K+R    P+   V   +
Sbjct: 15  KEGIEAATNAARAGQCVVIPTDTVYGIGADAFNPDACAKLLATKRRGPDMPVPVLVGSWT 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++         +  L + FWPG L++V+    +   +   T    T   R+P       
Sbjct: 75  TIQGLVREFTDTAKTLVEAFWPGGLSIVVPEAPSLPWNLGDT--RGTVLLRMPLQPVAIE 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG+           +   + + + +DGG +++G  STI+++    
Sbjct: 133 LLRETGPMAVSSANISGEAPPVTALGA-RNQFGEAVQVYLDGGKAEVGEPSTIIDISGPS 191

Query: 188 KVRILRPGGLEIETLKRAISVELE 211
            + ILR G +  E +   + +  E
Sbjct: 192 PI-ILREGAISPERIGGVLGMTPE 214


>gi|311279824|ref|YP_003942055.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae SCF1]
 gi|308749019|gb|ADO48771.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae SCF1]
          Length = 206

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  PRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEAIGEPMLSTSLMLPGSDFTESDPDEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDA 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|118580209|ref|YP_901459.1| Sua5/YciO/YrdC/YwlC family protein [Pelobacter propionicus DSM
           2379]
 gi|118502919|gb|ABK99401.1| translation factor SUA5 [Pelobacter propionicus DSM 2379]
          Length = 202

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L  G  IA PT+T YG+     N   I R+Y +K+R    P      ++S
Sbjct: 12  QRLIARVVDCLRNGGIIAYPTDTTYGIGCSIFNKKGIERIYRMKQREHKKPFSFICPNLS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V + A V   +  + K + PGP T VL+  +T D+  L     KT   R+P      ++
Sbjct: 72  EVARFARVSNTAFKILKRYLPGPYTFVLE--ATRDVPDLLLTRQKTVGIRIPDNRICLEI 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   SAN SG    T     +      ++ +++DGGI    + S++VN+  + 
Sbjct: 130 VQMLGSPIVTTSANLSGDE-PTGNPGFIDEIFGHQLDIVVDGGILTKEV-SSVVNLVNDT 187

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 188 P-EIIRAG 194


>gi|117926737|ref|YP_867354.1| translation factor SUA5 [Magnetococcus sp. MC-1]
 gi|117610493|gb|ABK45948.1| translation factor SUA5 [Magnetococcus sp. MC-1]
          Length = 211

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 98/207 (47%), Gaps = 5/207 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +  S  LR A + L+ G  +A PTET+YGL VD  NP A+RRL ++K R A   LI  V
Sbjct: 6   PLYPSEQLRHAVQLLEGGGILAYPTETLYGLGVDPFNPQAVRRLLDLKGREAKKGLILLV 65

Query: 65  SDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCG 122
            +   +      ++ ++  L + FWP PLTLVL   +   +  L T        R     
Sbjct: 66  PNSVALLPLVQPLEAVAQRLIEHFWPAPLTLVLP--AQAGLSSLLTGGTGLVAVRHSSSP 123

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           + + L+  +  PL   SAN SG          +++    ++ +I+ G      L ST+V 
Sbjct: 124 YVQALMAHWQRPLVSTSANPSGSQVQHWSPERIAAEWGGQVDMILAGPYDDGALASTVVK 183

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE 209
           V   + V +LR G +    L++ I +E
Sbjct: 184 VIAGRGV-VLREGAITCAQLQQIIPIE 209


>gi|260771095|ref|ZP_05880023.1| YrdC family protein [Vibrio furnissii CIP 102972]
 gi|260613984|gb|EEX39175.1| YrdC family protein [Vibrio furnissii CIP 102972]
          Length = 185

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N      + L +G  IA PTE V+G+  D  NP AI +L ++K+RP    LI   +    
Sbjct: 2   NNFEHTLQALQSGEVIAYPTEGVFGVGCDPDNPQAIEKLLQLKQRPVEKGLILIAASYQQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+    +     WPGP+T ++   ++  +    +    T   RV      +
Sbjct: 62  LLPYVDESQLTQEQLERVQSTWPGPVTWIMP--ASERVSHWVSGQFDTIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   YG PL   SAN SG       + +    +  ++  I+ G        S I +   
Sbjct: 120 KLCLAYGKPLTSTSANLSGLPPCMTTQEV-EQQLGDQLVAILQGETGGRNKPSEIRDA-- 176

Query: 186 EKKVRILRPG 195
            K +++LR G
Sbjct: 177 -KTLQVLRQG 185


>gi|218778786|ref|YP_002430104.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760170|gb|ACL02636.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 202

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 6/195 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + +  E L  G  IA PT+T+YG+  D  N  AI+++Y +K+  +  PL    SD+  
Sbjct: 13  RKIAQVVEVLKRGGIIAYPTDTIYGIGCDIMNKKAIQKVYRLKQMESTQPLSFICSDLQN 72

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           +  +A V   +    K   PGP T +L+  ++  +  +     KTA  RVP      ++I
Sbjct: 73  ISDYAKVSNYAYKTMKRLLPGPYTFILE--ASKLVPKIMITKRKTAGIRVPEHAICMEII 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G+P+   SA             +L      +I L+IDGG    G  S++V++  ++ 
Sbjct: 131 KELGNPIISTSAADLDGNEFM-DPSLLHDYYNNQIDLVIDGGPV-SGRASSVVSLIDDEP 188

Query: 189 VRILRPGGLEIETLK 203
             +LR G  ++   +
Sbjct: 189 -EVLRVGAGDVSIFE 202


>gi|302878814|ref|YP_003847378.1| Sua5/YciO/YrdC/YwlC family protein [Gallionella capsiferriformans
           ES-2]
 gi|302581603|gb|ADL55614.1| Sua5/YciO/YrdC/YwlC family protein [Gallionella capsiferriformans
           ES-2]
          Length = 209

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 4/190 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +   +++A   L  G  +  PT++ Y L     +  A+ R+ EI++    + L     D
Sbjct: 12  INMRLIKQAVSILKDGGIVVYPTDSCYALGCLLDDKNAVSRIREIRQLDDEHYLTLMCRD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +S +  +A VD     L K   PG  T +L+         L      T   R+P      
Sbjct: 72  LSEISNYARVDNAQFRLLKANTPGSYTFILEATREVP-KRLQHPKRSTIGIRIPDHPVAL 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+E  G P++  +     ++   N    +   + K++  +IDGG + +   +T++++  
Sbjct: 131 ALLEELGEPMSSSTLILPDEVWPLNDAERIRELLEKKVDAVIDGGAAGVDF-TTVIDLTG 189

Query: 186 EKKVRILRPG 195
           E  V +LR G
Sbjct: 190 EHPV-LLRQG 198


>gi|150024959|ref|YP_001295785.1| translation factor [Flavobacterium psychrophilum JIP02/86]
 gi|149771500|emb|CAL42969.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86]
          Length = 206

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +  A++K  + L  G  I  PT+TVYGL  D  N  A+ R+ +IK              D
Sbjct: 13  NEAAIKKVVDVLKNGGLIIYPTDTVYGLGCDITNTKALERIAKIKGIKLEKANFSFVCHD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           +S +  +   +D  +  + K   PGP T +L   +     P       T   RVP     
Sbjct: 73  LSNISDYVKQIDTATFKILKRALPGPYTFILPGNNNL---PKEFKKKTTVGIRVPDNNIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++++  G+P+   S +   + I  T    ++       + L+IDGG     + STI+++
Sbjct: 130 LEIVKMLGNPIVSTSIHDDDEVIEYTTDPELIFEKWQNLVDLVIDGGYGD-NVGSTIIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
              +   ++R G   ++ L
Sbjct: 189 SGHEP-EVIREGKGSLDIL 206


>gi|156972719|ref|YP_001443626.1| translation factor [Vibrio harveyi ATCC BAA-1116]
 gi|212288234|sp|A7N129|RIMN_VIBHB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|156524313|gb|ABU69399.1| hypothetical protein VIBHAR_00384 [Vibrio harveyi ATCC BAA-1116]
          Length = 185

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 7/182 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    +  
Sbjct: 5   EQVLKALQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQLLP 64

Query: 73  HASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +     L+          WPGP T ++   ++  +    +    +   RV      +K+ 
Sbjct: 65  YIDESQLTQEQLDQVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMC 122

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +G PL   SAN +GQ      + +    +   +  I+ G  S     S I + +  + 
Sbjct: 123 NAFGKPLTSTSANLTGQPPCMTTEEV-EEQLGDRLVAILRGETSGRNKPSEIRDAKTSQI 181

Query: 189 VR 190
           +R
Sbjct: 182 LR 183


>gi|120555438|ref|YP_959789.1| Sua5/YciO/YrdC/YwlC family protein [Marinobacter aquaeolei VT8]
 gi|120325287|gb|ABM19602.1| Sua5/YciO/YrdC/YwlC family protein [Marinobacter aquaeolei VT8]
 gi|302608188|emb|CBW44443.1| putative RNA binding protein with YrdC/RibB domain [Marinobacter
           hydrocarbonoclasticus]
          Length = 207

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +++A E L  G  I  PT++ Y L     +  A  R+  I++    + 
Sbjct: 5   FQIHPETPQKRLIKQAVEILRKGGVIVYPTDSGYALGCHLGDKQAADRIKRIRRLDDKHN 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D+S +  +A VD     L K F PGP T +LD  S      L     ++   RV
Sbjct: 65  FTLVCRDLSDIGVYAKVDNTQYRLLKNFTPGPYTFILDATSEVP-RRLLHPKRRSIGIRV 123

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L+   G P+   +    G+       + +  ++  E+ LIIDGG   +   +
Sbjct: 124 PDNEIVRELLGELGEPIMSSTLILPGETEPLTDPYDIRETLGHELDLIIDGGFCGM-EAT 182

Query: 179 TIVNVQCEKKVRILRPG 195
           T+VN   +    + R G
Sbjct: 183 TVVNFTGDVP-EVTRVG 198


>gi|157150566|ref|YP_001450439.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075360|gb|ABV10043.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 206

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 101/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 11  MDKIENILAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 70

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + + T  FR+P    T  LI 
Sbjct: 71  AFSKNQPTYLDQLYQAFLPGPLTIILQ--ANDQVPTWINSGMDTVGFRIPKHPVTLDLIR 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG++S T+ + I+     +++  + D   +  G +STI+++  EK  
Sbjct: 129 KYG-PLIGPSANLSGKVSGTSFQQIVMD-FQEQVSGVEDDA-ALTGQDSTILDLSGEK-A 184

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 185 HILRQGAIAREDI 197


>gi|158521899|ref|YP_001529769.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3]
 gi|158510725|gb|ABW67692.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3]
          Length = 202

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 6/196 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  + L  G  +A PT+T Y +  D     ++ ++Y+IK+R    P      D+ 
Sbjct: 12  ERLIAKVVDSLRQGGIVAFPTDTFYAIGCDIMQKKSVEKIYQIKQRHKSKPFSFICCDLK 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + ++A V   +    K   PGP T +L+   +  +     +  KTA  RVP       +
Sbjct: 72  DISEYAKVTDYAYRTMKRLLPGPYTFILE--GSRPLPKTMVSKRKTAGIRVPDNAICMAI 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G+P+   +A    +   T    ++     K + +++DGG       S+I++   ++
Sbjct: 130 VRALGNPVISTTAKLPDKGVFT-DPELIHDHFGKLLDIVVDGGPVPC-QPSSILSF-VDE 186

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G   ++  +
Sbjct: 187 EPEIIRRGLGPLDIFE 202


>gi|83719037|ref|YP_442432.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
 gi|167619438|ref|ZP_02388069.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis Bt4]
 gi|257138635|ref|ZP_05586897.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
 gi|83652862|gb|ABC36925.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           E264]
          Length = 209

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGPLE 203


>gi|262282283|ref|ZP_06060051.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. 2_1_36FAA]
 gi|262261574|gb|EEY80272.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. 2_1_36FAA]
          Length = 196

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + + T  FR+P    T  LI 
Sbjct: 61  AFSKNHPTYLDQLYQAFLPGPLTIILQ--ANDQVPTWINSGMDTVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG++S T+ + I+     +++  + D   +  G +STI+++  EK  
Sbjct: 119 KYG-PLIGPSANLSGKVSGTSFQQIVMD-FQEQVSGVEDDA-ALTGQDSTILDLSGEK-A 174

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 175 HILRQGAITREDI 187


>gi|205352606|ref|YP_002226407.1| hypothetical protein SG1394 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272387|emb|CAR37267.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627670|gb|EGE34013.1| hypothetical protein SG9_1422 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 206

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  GLSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++T G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|146282789|ref|YP_001172942.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri A1501]
 gi|145570994|gb|ABP80100.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri A1501]
 gi|327481127|gb|AEA84437.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas stutzeri DSM 4166]
          Length = 207

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  +  PT++ Y +     N   I R+  +++    +       D+S
Sbjct: 14  PRLIKQAVEIIRKGGVVVYPTDSSYAIGCSMGNKAGIERIRRLRQLDDKHNFTLACRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +   A VD  +  L K   PGP T++L          L     +T   RVP     + L
Sbjct: 74  QLGLFAKVDTAAFRLLKAHLPGPYTIILTATREVP-RMLLHPKRRTIGLRVPALPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G+    +  + +  ++  ++ LIIDGG   +   ST+V++  ++
Sbjct: 133 LEELGEPLMSVSLILPGEDLPMSDPYEMRDALEHQVDLIIDGGYGGL-EASTVVSLVDDQ 191

Query: 188 KVRILRPGGLEIE 200
              ++R G  + E
Sbjct: 192 P-EVVRVGCGDPE 203


>gi|306829486|ref|ZP_07462676.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus mitis ATCC 6249]
 gi|304428572|gb|EFM31662.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus mitis ATCC 6249]
          Length = 200

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL  ++ +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 2   MDRIRQELEKGGAVVLPTETVYGLFANALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILKDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175

Query: 190 RILRPGGLEIETL 202
           +ILR G ++ E +
Sbjct: 176 KILRQGAIKREDI 188


>gi|288869983|ref|ZP_06112469.2| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM
           13479]
 gi|288868885|gb|EFD01184.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM
           13479]
          Length = 162

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 4/137 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            D   L KA   L  G  +A PTETVYGL  ++ +  A +++Y  K RP+ NPLI H++D
Sbjct: 27  IDLKKLEKAAAILREGGLVAFPTETVYGLGANALDEEAAKKIYAAKGRPSDNPLIAHIAD 86

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
            S +K   A +   +  L + FWPGPLT++     +  +   +T  L T   R+P     
Sbjct: 87  FSDLKPLVAEIPETAKKLMEAFWPGPLTMIFP--KSDAVPYGTTGGLDTVAVRMPSDPVA 144

Query: 125 KKLIETYGHPLAIPSAN 141
             LI   G P+A PSAN
Sbjct: 145 MTLIRLSGVPVAAPSAN 161


>gi|146311854|ref|YP_001176928.1| hypothetical protein Ent638_2202 [Enterobacter sp. 638]
 gi|145318730|gb|ABP60877.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter sp. 638]
          Length = 206

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  ARLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  EISTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQML 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +ET G P+   S    G     +    +   + K++ LII GG       +T+V++  + 
Sbjct: 133 LETLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVVDLTEDA 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-EVIREG 198


>gi|198245890|ref|YP_002215421.1| hypothetical protein SeD_A1608 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197940406|gb|ACH77739.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 206

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++T G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LDTLGEPMLSTSLMLLGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|91226311|ref|ZP_01261151.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 12G01]
 gi|269966992|ref|ZP_06181062.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 40B]
 gi|91189322|gb|EAS75601.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 12G01]
 gi|269828386|gb|EEZ82650.1| Sua5/YciO/YrdC family protein [Vibrio alginolyticus 40B]
          Length = 185

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +    L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2   DNFEQVLNALKQGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYDQ 61

Query: 70  VKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+    +     WPGP T ++   ++  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLTEEQLQTVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+   +G PL   SAN SG       + +    +  ++  I+ G  S     S I + + 
Sbjct: 120 KMCNAFGKPLTSTSANLSGLPPCMTTEEV-EEQLGDKLVAILRGETSGRDKPSEIRDAKT 178

Query: 186 EKKVR 190
            + +R
Sbjct: 179 SQILR 183


>gi|332521840|ref|ZP_08398289.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042512|gb|EGI78714.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 206

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 13/207 (6%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q + I + N     ++K  E L  G  +  PT+TVYGL  D  N  A+ R+  IK     
Sbjct: 3   QFIRIYEENPNPKEIKKVIEVLKNGGLVIYPTDTVYGLGCDINNTKALERIARIKGVKLE 62

Query: 58  NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
              L     D+S +  +   +D  +  + K   PGP T +L    +    P      K  
Sbjct: 63  KANLSFICEDLSNLSDYVKQIDTATFKILKRALPGPYTFILPGSKSL---PSVFKKKKEV 119

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISK 173
             R+P    T ++++  G+PL   S     ++   T    ++       + L+IDGG   
Sbjct: 120 GIRIPNNNITLEIVKALGNPLVSTSIRDEDEVLEYTTDPELILEKWDNLVDLVIDGGYGG 179

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200
               STI+++  ++   ++R G   +E
Sbjct: 180 -NQGSTIIDLSNDEP-EVVREGKGSLE 204


>gi|78222805|ref|YP_384552.1| translation factor SUA5 [Geobacter metallireducens GS-15]
 gi|78194060|gb|ABB31827.1| translation factor SUA5 [Geobacter metallireducens GS-15]
          Length = 203

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L  G  IA PT+T YG+     +   I R+Y +K+R    P     SD+S
Sbjct: 12  PRLVAQVVKILKDGGIIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSDLS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++A V   +  + K   PGP T VLD  +T+ +  L     KT   R+P       L
Sbjct: 72  EVARYAKVSNYAYKMLKRHLPGPYTFVLD--ATSIVPDLLVTKQKTVGIRIPDNRICLSL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  GHP+   SAN SG+       +++  ++ K++ +++DGGI    + S++V++  + 
Sbjct: 130 VKELGHPIITTSANLSGEE-PIGDPYLVDLNMGKQLDVVVDGGILSADV-SSVVSLIGDY 187

Query: 188 KVRILRPG 195
             ++LR G
Sbjct: 188 P-QVLRQG 194


>gi|307729238|ref|YP_003906462.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003]
 gi|307583773|gb|ADN57171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1003]
          Length = 211

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S
Sbjct: 14  PRLVKQAVQIINDGGVVALPTDSSYALACHLDDKNAVERLRRIRGLDEKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          LS  + KT   RVP    T  +
Sbjct: 74  ELANFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+ +  N    + + + K++ L+IDGG   +   ST++++  ++
Sbjct: 133 LGELGQPLLGSTLILPGETAPLNDPEEIRARLEKQLDLVIDGGAC-VCEPSTVIDLTGDE 191

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 192 PVLVRAGRG 200


>gi|314927456|gb|EFS91287.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL044PA1]
 gi|328907542|gb|EGG27308.1| SUA5 related protein [Propionibacterium sp. P08]
          Length = 295

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 8/210 (3%)

Query: 3   IMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           I+ + D +A    L +A + +  G  I +PT+TVYG+  D+ NP A++RL   K+R    
Sbjct: 53  ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112

Query: 59  PLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P    VSD   +       P  +  LA+ +WPG LTL+L    +  +    T    T   
Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMDLGETNG--TLAV 170

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           RVP     + +     P+A+ SAN+SG  +    +   +  +  E+ + +D G S++G  
Sbjct: 171 RVPDQDQTRELLRMTGPMAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGES 229

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           STI++       +++R G L +E +    S
Sbjct: 230 STIIDFVSTADGKVVRQGALSLEAIHEVAS 259


>gi|295676914|ref|YP_003605438.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002]
 gi|295436757|gb|ADG15927.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. CCGE1002]
          Length = 211

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S
Sbjct: 14  PRLVKQAAQIINDGGVVALPTDSTYALACRLDDKDAVERLRRIRGLDEKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          +S  + KT   RVP    T  +
Sbjct: 74  ELANFAMVDNWQYRLLKSVTPGPYVFVLQATKEVP-RRVSHPSRKTIGLRVPDHAITLAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    N    + + + K++ L+IDGG   +   ST++++   +
Sbjct: 133 LEELGQPLLGTTLIMPGETEPLNDPEEIRARLEKQLDLVIDGGAC-VCEPSTVIDLTGSE 191

Query: 188 KVRILRPGGLEIE 200
            V ++R G  ++E
Sbjct: 192 PV-LVRAGRGQLE 203


>gi|229592266|ref|YP_002874385.1| hypothetical protein PFLU4879 [Pseudomonas fluorescens SBW25]
 gi|229364132|emb|CAY51764.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 209

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E + AG  +  PT++ Y +     +  A+ R+  +++    
Sbjct: 3   QFFQIHPENPQARLIKQAVEIIRAGGVVIYPTDSSYAIGCQIGDKGAVERVRRLRQLDDK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +      SD+S +   A VD  +  L K   PGP T +L+         L     +T   
Sbjct: 63  HNFALICSDLSQLGLFAKVDTGTFRLLKAHTPGPYTFILNATREVP-RLLLHPKKRTIGL 121

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+   G PL   S    G        + +   + K++ LIIDGG    G 
Sbjct: 122 RVPEHPIALALLAELGEPLMSVSLIMPGDTEPLEDPYEMRQLLEKQVDLIIDGGFGG-GK 180

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            ST++N+  + +  ++R G 
Sbjct: 181 ASTVINL-ADGEPEVIRVGC 199


>gi|324992931|gb|EGC24851.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK405]
 gi|325687439|gb|EGD29460.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK72]
 gi|327462227|gb|EGF08554.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1]
 gi|327489582|gb|EGF21374.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1058]
          Length = 196

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNPPSYLDQLYQAFLPGPLTIILQ--ANDQVPVWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +++  + D   +  G +STI+++  EK  
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEQVSGVEDD-PALTGQDSTILDLSGEK-A 174

Query: 190 RILRPGGLEIETL 202
           RILR G +  E +
Sbjct: 175 RILRQGAITREDI 187


>gi|72162816|ref|YP_290473.1| translation factor SUA5 [Thermobifida fusca YX]
 gi|71916548|gb|AAZ56450.1| translation factor SUA5 [Thermobifida fusca YX]
          Length = 259

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 5/214 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +  A   +  G  + +PT+TVYG+  D+ NP A+  L   K+R   +P    V  +   
Sbjct: 16  GIADAASTVRRGELVVLPTDTVYGVGADAFNPAAVTALRNAKQRGREHPPAVLVGTVRAA 75

Query: 71  KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           +            L + FWPGPLTLV    +T  +         T   R+P       + 
Sbjct: 76  QALIDDLGKYGQDLIEEFWPGPLTLVC--AATPSLSWDLGDTKGTVAVRMPMHPVALELL 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A+  AN +G+ + T V+    +     + + +D G       STIV++      
Sbjct: 134 KEVGPMAVSGANVTGKPAATTVEEA-ETQFGDAVSVYLDAGPCTSTPPSTIVDLTYAVP- 191

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
           R+LR G + +E L+      +         P++ 
Sbjct: 192 RVLRSGAITLEQLRSVCGTVIAELKRPEREPKTS 225


>gi|313837663|gb|EFS75377.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA2]
 gi|314972603|gb|EFT16700.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA3]
          Length = 295

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 8/210 (3%)

Query: 3   IMSITDSNA----LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           I+ + D +A    L +A + +  G  I +PT+TVYG+  D+ NP A++RL   K+R    
Sbjct: 53  ILDVADPDACEEALVQAADAIADGECIVLPTDTVYGIGADALNPLAVQRLLNAKERGRDM 112

Query: 59  PLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P    VSD   +       P  +  LA+ +WPG LTL+L    +  +    T    T   
Sbjct: 113 PPPVLVSDSVALPALCQHIPAGAKALAEKYWPGGLTLILRAQESLGMDLGETNG--TLAV 170

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           RVP     + +     P+A+ SAN+SG  +    +   +  +  E+ + +D G S++G  
Sbjct: 171 RVPDQDQTRELLRMTGPMAVSSANKSGHPAALTAQEA-ADQLGVEVAVYLDAGPSRVGES 229

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           STI++       +++R G L +E +    S
Sbjct: 230 STIIDFVSTADGKVVRQGALSLEAIHEVAS 259


>gi|108706710|gb|ABF94505.1| yrdC protein, putative, expressed [Oryza sativa Japonica Group]
 gi|125585293|gb|EAZ25957.1| hypothetical protein OsJ_09812 [Oryza sativa Japonica Group]
 gi|215695443|dbj|BAG90626.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 274

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 5/201 (2%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T+ + ++ A + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL  
Sbjct: 64  ILPATNDHVMK-AIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLAI 122

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V+D+  + + A VD L   L     PGP+T+VL   + + +       L++   RVP  
Sbjct: 123 CVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPDF 182

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STI 180
            F + +    G  LA+ SAN SG  S  NVK      +      + DGGI   G   STI
Sbjct: 183 DFIRAISRGAGSALALTSANLSGHPSSVNVKD--FEDLWPHCSYVFDGGILPSGRAGSTI 240

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           V++      +ILR G    ET
Sbjct: 241 VDLITPGVYKILRDGSSRQET 261


>gi|257061454|ref|YP_003139342.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802]
 gi|256591620|gb|ACV02507.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8802]
          Length = 217

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 10/207 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            ++ +    L  G  +  PT+TVY +  D  N  A++R+ ++K+     PL    S +S 
Sbjct: 15  RSIEEITTELQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSN 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKL 127
           +  +A V   +  + K   PGP T +L   +T  +  L  +   KT   RVP     + +
Sbjct: 75  IADYALVSDEAYRIMKRVIPGPYTFLLP--ATKLVPKLVMSPKRKTTGIRVPNHSICQMI 132

Query: 128 IETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++  G+P+   SA+   +     ++   K  L   +  ++ LIID G+      STI+++
Sbjct: 133 LQNLGNPIVSSSAHLPDEEGEFPTLELEKAKLFDRLDHQVDLIIDNGLEPGFEVSTILDM 192

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL 210
             E+   I +  GL  + L+  +++ +
Sbjct: 193 TSEEPAVIRQ--GLGWDELQNWLNITV 217


>gi|311694079|gb|ADP96952.1| Sua5/YciO/YrdC/YwlC family protein [marine bacterium HP15]
          Length = 207

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 4/198 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     + +A + L  G  I  PT++ Y +     +  A  R+  I++    + 
Sbjct: 5   FQIHPETPQKRLINQAVDILRRGGVIVYPTDSAYAIGCHLGDKQAADRIKRIRRLDDKHN 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D+S +  +A VD     L K F PGP T +LD  S      L     ++   RV
Sbjct: 65  FTLVCRDLSDIGVYAKVDNTQYRLLKNFTPGPYTFILDATSEVP-RRLLHPKRRSVGVRV 123

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L+   G P+   +    G+       + +  ++  E+ LIIDGG   +   +
Sbjct: 124 PDNAIVQELLGELGEPIMSSTLILPGETDPMTDPYEIRETLEHELDLIIDGGFCGM-EAT 182

Query: 179 TIVNVQCEKKVRILRPGG 196
           T+V+   E  V      G
Sbjct: 183 TVVDFTGEAPVVTRVGKG 200


>gi|186476189|ref|YP_001857659.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815]
 gi|184192648|gb|ACC70613.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia phymatum STM815]
          Length = 230

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +++G  +A+PT++ Y LA    N  A+ R+  I+       L   V D+S
Sbjct: 33  PRLIKQAAQIIESGGVVALPTDSSYALACQLDNRNAVDRVRRIRGIDERQLLSLLVRDLS 92

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          LS  + KT   RVP    T  +
Sbjct: 93  ELANFALVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 151

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    N    +   + K++ L+IDGG       ST++++  E+
Sbjct: 152 LEELGQPLLGSTLILPGETQPLNDPAEIRERLEKQLDLVIDGGACPC-EPSTVIDLTGEE 210

Query: 188 KVRILRPG 195
            V ++RPG
Sbjct: 211 PV-LVRPG 217


>gi|315426641|dbj|BAJ48267.1| translation factor [Candidatus Caldiarchaeum subterraneum]
          Length = 194

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 6/196 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E +  G  I  PT+TVYG+  D     A+ R+   K+R    P    VSD   + + A
Sbjct: 4   AAEAVKRGGVIVYPTDTVYGIGCDPFKIEAVERVIHAKRR-EKKPAPVLVSDFDQLHEVA 62

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGH 133
                 L  A   WPG +T+V+      ++  L TA  KT   R+P      LI +    
Sbjct: 63  VPTEEELEAAIRLWPGAVTIVM--AKKPELPELVTAGEKTVGVRMPAHVVPLLIMQKAHR 120

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL   SAN S + S T +  I SS + K + +++D G +   L ST+V +Q + +V +LR
Sbjct: 121 PLVGTSANISDEPSATTIDQIPSSVLEK-VDVVVDAGRTHHLLPSTVVKIQ-DGQVVVLR 178

Query: 194 PGGLEIETLKRAISVE 209
            G L  E +++ I + 
Sbjct: 179 EGVLSREEIEKRIGLR 194


>gi|119775262|ref|YP_928002.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella amazonensis SB2B]
 gi|119767762|gb|ABM00333.1| translation factor SUA5 [Shewanella amazonensis SB2B]
          Length = 206

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L +G  I  PT++ Y L     +  A+ R+  I++    +       D+S
Sbjct: 14  KRLIDQAVNILRSGGVIVYPTDSGYALGCLIGDKNAMERIVRIRQMEQDHHFSLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V+  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  EIATYARVENQAFRLVKHCTPGPYTFIFKATKEVP-RRLQNDKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    GQ    +    +   +  ++  I++GG       +T+V++  E 
Sbjct: 133 LEALGEPLMSTSLVMPGQEFAESDPEHIRDLLEHQVEAILNGGYLGES-PTTVVDM-SED 190

Query: 188 KVRILRPGGLEI 199
              +LR G  +I
Sbjct: 191 TFEVLREGAGDI 202


>gi|227080291|ref|YP_002808842.1| Sua5/YciO/YrdC family protein [Vibrio cholerae M66-2]
 gi|298501236|ref|ZP_07011035.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757]
 gi|227008179|gb|ACP04391.1| Sua5/YciO/YrdC family protein [Vibrio cholerae M66-2]
 gi|297540108|gb|EFH76170.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757]
          Length = 188

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA++RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMQRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTADQLAQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRCGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|218247212|ref|YP_002372583.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801]
 gi|218167690|gb|ACK66427.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 8801]
          Length = 217

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 96/207 (46%), Gaps = 10/207 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            ++ +    L  G  +  PT+TVY +  D  N  A++R+ ++K+     PL    S +S 
Sbjct: 15  RSIEEITTELQKGAVMLYPTDTVYAIGCDLNNKAAVQRVRQLKQLSNDKPLTFLCSSLSN 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKL 127
           +  +A V   +  + K   PGP T +L   +T  +  L  +   KT   RVP     + +
Sbjct: 75  IADYALVSDEAYRIMKRVIPGPYTFLLP--ATKLVPKLVMSPKRKTTGIRVPNHSICQMI 132

Query: 128 IETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++  G+P+   SA+   +     ++   K  L   +  ++ LIID G+      STI+++
Sbjct: 133 LQNLGNPIVSSSAHLPDEDGEFPTLELEKAKLFDRLDHQVDLIIDNGLEPGFEVSTILDM 192

Query: 184 QCEKKVRILRPGGLEIETLKRAISVEL 210
             E+   I +  GL  + L+  +++ +
Sbjct: 193 TSEEPAVIRQ--GLGWDELQNWLNITV 217


>gi|153834324|ref|ZP_01986991.1| protein YrdC [Vibrio harveyi HY01]
 gi|148869332|gb|EDL68346.1| protein YrdC [Vibrio harveyi HY01]
          Length = 185

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
               +  + L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2   ENFEQVLKALQTGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+          WPGP T ++   ++  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLTQEQLDKVHATWPGPYTWIMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+   +G PL   SAN +GQ      + +    +   +  I+ G  S     S I + + 
Sbjct: 120 KMCNAFGKPLTSTSANLTGQPPCMTTEEV-EEQLGDRLVAILRGETSGRDKPSEIRDAKT 178

Query: 186 EKKVR 190
            + +R
Sbjct: 179 SQILR 183


>gi|293399949|ref|ZP_06644095.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306349|gb|EFE47592.1| Sua5/YciO/YrdC/YwlC family protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 203

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ +   ++  +    + L  G  +A PT+TVYGLAV   N  A+  L + K RP   P+
Sbjct: 1   METVR-YEAKDIETIADLLKEGKVVAFPTDTVYGLAVIYENEAALEALKKSKGRPENKPI 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              VS+   +++ A +   +  LA+ F PG  T++L       +    T    T   R+P
Sbjct: 60  PTMVSNFRQMEEIAYMSEDARKLAEEFMPGGFTMIL--KKKEHLPAYLTNGFDTVGIRMP 117

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  LI+    PL + SAN SG+      + +L   +   I  I+ G  S     ST
Sbjct: 118 DDDIILHLIDLCEKPLLVTSANLSGEEPQETAEGVLK-QLDGRIDAIVVGE-SGGSKAST 175

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           IV++  ++ +RI+R G +  + ++  +
Sbjct: 176 IVDMSTDE-LRIVREGPISEKRIREVL 201


>gi|260773018|ref|ZP_05881934.1| YrdC family protein [Vibrio metschnikovii CIP 69.14]
 gi|260612157|gb|EEX37360.1| YrdC family protein [Vibrio metschnikovii CIP 69.14]
          Length = 206

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNVKRKTIGIRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G+ +  +    +   +   + +I++GG       +T+++   ++
Sbjct: 133 LEALGEPLMSTSLILPGKETTESDPEEIRDRLEHLVDVILNGGYLGE-QPTTVIDFSEDE 191

Query: 188 KVRILRPGG 196
            V + R G 
Sbjct: 192 MV-VARLGA 199


>gi|332879949|ref|ZP_08447634.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332682160|gb|EGJ55072.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 208

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 9/201 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   + K  E L  G  I  PT+TVYGL  D  N  A+ ++  IK             SD
Sbjct: 13  NEKEIAKIVEVLRNGGLIIYPTDTVYGLGCDITNTKALEKIARIKGVKLEKANFSFVCSD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +  +  +   +D  +  L K   PG  T ++   +     P      KT   RVP     
Sbjct: 73  LKNLSDYVKQIDSSTFKLLKRALPGAYTFIMQGNNNL---PKDFKKKKTVGIRVPDNLIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + ++E  G+P+   S       I  T    ++       + ++IDGG       ST++++
Sbjct: 130 RTIVERLGNPIVSTSIYDEDDVIEYTTDPELIFEKWQNLVDIVIDGGYGD-NTASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIETLKR 204
             ++ V ++R G  +++ + R
Sbjct: 189 SGDEPV-VIREGKGDVDIISR 208


>gi|312962721|ref|ZP_07777210.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens WH6]
 gi|311283096|gb|EFQ61688.1| SUA5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens WH6]
          Length = 222

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E + AG  +  PT++ Y +     +  A+ R+  +++    
Sbjct: 16  QFFQIHPENPQARLIKQAVEIIRAGGVVIYPTDSSYAIGCQIGDKGAVERVRRLRQLDDK 75

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +      SD+S +   A VD  +  L K   PGP T +L+         L     +T   
Sbjct: 76  HNFALICSDLSQLGLFAKVDTGTFRLLKAHTPGPYTFILNATREVP-RLLLHPKKRTIGL 134

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+   G PL   S    G        + +   + K++ LIIDGG    G 
Sbjct: 135 RVPEHPIALALLAELGEPLMSVSLIMPGDTEPLEDPYEMRQLLEKQVDLIIDGGFGG-GK 193

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            ST++N+  + +  ++R G 
Sbjct: 194 ASTVINL-ADGEPEVVRVGC 212


>gi|28898727|ref|NP_798332.1| putative translation factor [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839753|ref|ZP_01992420.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810]
 gi|260363729|ref|ZP_05776505.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus K5030]
 gi|260877277|ref|ZP_05889632.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897776|ref|ZP_05906272.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus
           Peru-466]
 gi|260903496|ref|ZP_05911891.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ4037]
 gi|28806945|dbj|BAC60216.1| putative translation factor [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746720|gb|EDM57708.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ3810]
 gi|308087594|gb|EFO37289.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308090289|gb|EFO39984.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308106751|gb|EFO44291.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus AQ4037]
 gi|308114914|gb|EFO52454.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio parahaemolyticus K5030]
 gi|328474709|gb|EGF45514.1| putative translation factor [Vibrio parahaemolyticus 10329]
          Length = 206

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  EISLYARVDNGAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPNNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   + +I++GG       +T+++   E 
Sbjct: 133 LEALGEPLMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDF-SEG 190

Query: 188 KVRILRPGGLEIETLK 203
           +  ++R G  +    +
Sbjct: 191 EPEVVRIGSGDPSPFE 206


>gi|315178580|gb|ADT85494.1| translation factor [Vibrio furnissii NCTC 11218]
          Length = 185

 Score =  175 bits (444), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N      + L +G  IA PTE V+G+  D  NP AI +L ++K+RP    LI   +    
Sbjct: 2   NNFEHTLQALQSGEVIAYPTEGVFGVGCDPDNPQAIEKLLQLKQRPVEKGLILIAASYQQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+    +     WPGP+T ++   ++  +    +    T   RV      +
Sbjct: 62  LLPYIDESQLTQEQLERVQSTWPGPVTWIMP--ASERVSHWVSGQFDTIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   YG PL   SAN SG       + +    +  ++  I+ G        S I +   
Sbjct: 120 KLCLAYGKPLTSTSANLSGLPPCMTTQEV-EQQLGDQLVAILQGETGGRNKPSEIRDA-- 176

Query: 186 EKKVRILRPG 195
            K +++LR G
Sbjct: 177 -KTLQVLRQG 185


>gi|108757718|ref|YP_632028.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
 gi|108461598|gb|ABF86783.1| Sua5/YciO/YrdC/YwlC family protein [Myxococcus xanthus DK 1622]
          Length = 203

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 6/194 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L+ G  +A PT+T +GL  D  +   I RLY++K R    PL     D+S
Sbjct: 15  PRHIQRAVEVLERGGLLAYPTDTYFGLGCDLSSKKGIERLYQLKGRDKKKPLSFLCPDLS 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            V ++A V   +    K   PG  T +L+  +T  +  L  +  K    RVP     ++L
Sbjct: 75  DVARYAHVSNFAYRTMKSLTPGAFTFILE--ATRLVPDLMMSKQKQVGIRVPDSALVREL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
               G PL   SA  +    +T+ K  + + +   + LI+DGG++ +   ST++++  + 
Sbjct: 133 TRALGRPLVTTSATNTEGEPLTDAKD-IKADLGHGLDLILDGGVT-LNEPSTVISLIGD- 189

Query: 188 KVRILRPGGLEIET 201
            + ILR G   +E 
Sbjct: 190 SLEILRQGKGRLED 203


>gi|125542795|gb|EAY88934.1| hypothetical protein OsI_10418 [Oryza sativa Indica Group]
          Length = 274

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 5/201 (2%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+  T+ + ++ A + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL  
Sbjct: 64  ILPATNDHVMK-AIDSINRGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRVQTRPLAI 122

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V+D+  + + A VD L   L     PGP+T+VL   + + +       L++   RVP  
Sbjct: 123 CVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGNNSILERSLNPGLESIGVRVPDF 182

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STI 180
            F + +    G  LA+ SAN SG+ S  NVK      +      + DGGI   G   STI
Sbjct: 183 DFIRAISRGAGSALALTSANLSGRPSSVNVKD--FEDLWPHCSYVFDGGILPSGRAGSTI 240

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           V++      +ILR G    ET
Sbjct: 241 VDLITPGVYKILRDGSSRQET 261


>gi|331007378|ref|ZP_08330567.1| hypothetical protein IMCC1989_1396 [gamma proteobacterium IMCC1989]
 gi|330418812|gb|EGG93289.1| hypothetical protein IMCC1989_1396 [gamma proteobacterium IMCC1989]
          Length = 203

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 8/204 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q+ SI   N     + +A E +  G  +A PT++ Y L     +  A+ R+  I++    
Sbjct: 3   QLFSIHPENPQARFITRAVEIIRKGGLVAYPTDSAYALGCHIGDKFALDRIRGIRQLDKH 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A V+  +  + K F PGP T +L+  S T    L     KT   
Sbjct: 63  HNFTLVCRDLSEIATYAKVNNQAYRMIKNFTPGPFTFILEATSETP-RRLKHPKRKTIGL 121

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+E    P+   +     +       + +  ++  ++ L+IDGG   +  
Sbjct: 122 RVPSNPVALALLEELNEPMMTSTLILPNESQPLTDPYDIRETLEHQLELVIDGGFCGM-E 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200
            +T+V++  ++ V I+R G    E
Sbjct: 181 ATTVVDMTGDEPV-IVRQGCGVFE 203


>gi|324991174|gb|EGC23108.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK353]
          Length = 196

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ I  + 
Sbjct: 1   MDKIEKTLVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +EI  + D   S  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEISGVEDDA-SLTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|261340037|ref|ZP_05967895.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288317957|gb|EFC56895.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 206

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  ARLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +ET G P+   S    G     +    +   + K + LII GG       +T++++  + 
Sbjct: 133 LETLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGYLGQ-QPTTVIDLTEDA 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-EVIREG 198


>gi|317063168|ref|ZP_07927653.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688844|gb|EFS25679.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185]
          Length = 219

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 1   MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M  +  T  NA   +    L  G  I  PT+TVYG+     +  AI ++Y+ K+R   +P
Sbjct: 4   MNKVKYTSLNADYDEIGRLLKDGNLIIYPTDTVYGVGGIIESDEAITKVYKAKERSFKSP 63

Query: 60  LICHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           LI  VSD+S +++ A ++  +      L K FWPG LT++L+     ++  +  +  KT 
Sbjct: 64  LIVLVSDVSKIEEIAYIEEKNREKIEKLIKKFWPGGLTIILN--KKENVPDIMVSGGKTV 121

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      K+IE  G  L   SAN SG+ +  + +  LS +  + + +++DGG   I
Sbjct: 122 GVRMPDLDTALKIIEAAGGLLPTTSANISGEATPKSYEE-LSEAFKERVEILVDGGKCPI 180

Query: 175 GLESTIVNVQCEKKVRILRPGG 196
           G  STI+++    K +ILR G 
Sbjct: 181 GNASTIIDMS--DKPKILRTGA 200


>gi|322614979|gb|EFY11904.1| hypothetical protein SEEM315_01811 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621427|gb|EFY18281.1| hypothetical protein SEEM971_11630 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623231|gb|EFY20073.1| hypothetical protein SEEM973_05841 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628521|gb|EFY25309.1| hypothetical protein SEEM974_16300 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633685|gb|EFY30425.1| hypothetical protein SEEM201_01494 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638507|gb|EFY35202.1| hypothetical protein SEEM202_14835 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640823|gb|EFY37472.1| hypothetical protein SEEM954_09139 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645313|gb|EFY41841.1| hypothetical protein SEEM054_03164 [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651804|gb|EFY48176.1| hypothetical protein SEEM675_03227 [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654299|gb|EFY50621.1| hypothetical protein SEEM965_10369 [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659264|gb|EFY55512.1| hypothetical protein SEEM19N_12191 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662734|gb|EFY58941.1| hypothetical protein SEEM801_18172 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667655|gb|EFY63815.1| hypothetical protein SEEM507_07019 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671931|gb|EFY68052.1| hypothetical protein SEEM877_04046 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677023|gb|EFY73087.1| hypothetical protein SEEM867_17434 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680315|gb|EFY76354.1| hypothetical protein SEEM180_05885 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685256|gb|EFY81252.1| hypothetical protein SEEM600_09039 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195434|gb|EFZ80613.1| hypothetical protein SEEM581_00405 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199315|gb|EFZ84409.1| hypothetical protein SEEM501_04659 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204773|gb|EFZ89769.1| hypothetical protein SEEM460_05081 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205931|gb|EFZ90894.1| hypothetical protein SEEM020_06034 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323209959|gb|EFZ94868.1| hypothetical protein SEEM6152_14301 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217256|gb|EGA01977.1| hypothetical protein SEEM0077_19770 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220711|gb|EGA05156.1| hypothetical protein SEEM0047_22885 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227965|gb|EGA12117.1| hypothetical protein SEEM0055_13137 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232120|gb|EGA16227.1| hypothetical protein SEEM0052_17269 [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234647|gb|EGA18734.1| hypothetical protein SEEM3312_15960 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238099|gb|EGA22158.1| hypothetical protein SEEM5258_03733 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243297|gb|EGA27316.1| hypothetical protein SEEM1156_03139 [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248446|gb|EGA32381.1| hypothetical protein SEEM9199_22439 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252552|gb|EGA36395.1| hypothetical protein SEEM8282_02206 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255423|gb|EGA39189.1| hypothetical protein SEEM8283_12880 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260825|gb|EGA44427.1| hypothetical protein SEEM8284_12339 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267588|gb|EGA51071.1| hypothetical protein SEEM8285_08414 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270946|gb|EGA54382.1| hypothetical protein SEEM8287_13334 [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 206

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  QRLINQAVDIVLKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSYVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++T G P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LDTLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|110832995|ref|YP_691854.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
 gi|123345894|sp|Q0VTD8|RIMN_ALCBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|110646106|emb|CAL15582.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
          Length = 182

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + +  G  +A PTE+VYGL  D  N  A+ +L  IK RP    LI     ++ +  + 
Sbjct: 8   AAQIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLAPYL 67

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            ++       +  WP P+T ++D  ++  +        +    RVP     ++L +  G 
Sbjct: 68  HLNEQQSAQLEKKWPAPITYLVD--ASDRLPAWVRGEHRKVAVRVPDHPLARQLCQLAGQ 125

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           P+   SAN SG+ +  N   +    +  ++  I+ G   +    STI++++  + +R 
Sbjct: 126 PIISTSANISGRPAARNRYQVAR-QLGNQLDFIVSGACDRAAKPSTIIDLESGRILRP 182


>gi|258626121|ref|ZP_05720972.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM603]
 gi|262172819|ref|ZP_06040497.1| YrdC family protein [Vibrio mimicus MB-451]
 gi|258581647|gb|EEW06545.1| Sua5/YciO/YrdC family protein [Vibrio mimicus VM603]
 gi|261893895|gb|EEY39881.1| YrdC family protein [Vibrio mimicus MB-451]
          Length = 185

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L++A   L +G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   ++   
Sbjct: 2   DNLQQAVHVLQSGGVIAYPTEGVFGLGCDPDNQAAMLRLLAIKQRPIEKGVILIAANYEQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +   + L+          WP PLT V+   ++            T   RV      +
Sbjct: 62  LRPYIDENQLTADQLAQVLASWPAPLTWVMP--ASIHTPSWVRGQFDTVAVRVSNHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G PL   SAN SGQ + T  + ++ + +  +I  +++G  S     S I + + 
Sbjct: 120 QLCLAFGKPLTSTSANLSGQSACTTQQEVV-AQLGSQIEAVLEGKTSGRCGPSEIRDARS 178

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 179 ---LQVLRQG 185


>gi|257468920|ref|ZP_05633014.1| SUA5 protein [Fusobacterium ulcerans ATCC 49185]
          Length = 216

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 1   MQIMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M  +  T  NA   +    L  G  I  PT+TVYG+     +  AI ++Y+ K+R   +P
Sbjct: 1   MNKVKYTSLNADYDEIGRLLKDGNLIIYPTDTVYGVGGIIESDEAITKVYKAKERSFKSP 60

Query: 60  LICHVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           LI  VSD+S +++ A ++  +      L K FWPG LT++L+     ++  +  +  KT 
Sbjct: 61  LIVLVSDVSKIEEIAYIEEKNREKIEKLIKKFWPGGLTIILN--KKENVPDIMVSGGKTV 118

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P      K+IE  G  L   SAN SG+ +  + +  LS +  + + +++DGG   I
Sbjct: 119 GVRMPDLDTALKIIEAAGGLLPTTSANISGEATPKSYEE-LSEAFKERVEILVDGGKCPI 177

Query: 175 GLESTIVNVQCEKKVRILRPGG 196
           G  STI+++    K +ILR G 
Sbjct: 178 GNASTIIDMS--DKPKILRTGA 197


>gi|322391880|ref|ZP_08065345.1| Sua5/YciO/YrdC family protein [Streptococcus peroris ATCC 700780]
 gi|321145360|gb|EFX40756.1| Sua5/YciO/YrdC family protein [Streptococcus peroris ATCC 700780]
          Length = 200

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 100/190 (52%), Gaps = 8/190 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++ +  ++  +   P
Sbjct: 9   LENGGAVVLPTETVYGLFAKALDEKAVEHVYQLKRRPKDKALNLNIASLEAIEFFSKNQP 68

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
             L  L + F PGPLT++L+  +   +     + LKT  FR+P    T  LI   G PL 
Sbjct: 69  TYLKRLVEAFLPGPLTIILE--ANDRVPYWVNSGLKTVGFRMPSHPITLDLIRETG-PLI 125

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG +S    K IL     + + L  D  ++  G +STI+++  +K V+ILR G 
Sbjct: 126 GPSANISGHVSGIVFKDILKDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-VKILRQGA 182

Query: 197 LEIETLKRAI 206
           +  E +   +
Sbjct: 183 ITREDILAEL 192


>gi|303260466|ref|ZP_07346434.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262823|ref|ZP_07348760.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303265293|ref|ZP_07351203.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS397]
 gi|303266500|ref|ZP_07352387.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS457]
 gi|303268381|ref|ZP_07354177.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS458]
 gi|302636021|gb|EFL66519.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638378|gb|EFL68845.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae SP-BS293]
 gi|302642102|gb|EFL72453.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS458]
 gi|302643951|gb|EFL74211.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS457]
 gi|302645158|gb|EFL75395.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae BS397]
          Length = 209

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 11  IDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 70

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 71  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 129 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 184

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 185 KILRQGAIKREDILARL 201


>gi|53719872|ref|YP_108858.1| hypothetical protein BPSL2262 [Burkholderia pseudomallei K96243]
 gi|53723777|ref|YP_103302.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344]
 gi|76812077|ref|YP_334088.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710b]
 gi|121599611|ref|YP_993496.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1]
 gi|124385702|ref|YP_001029074.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229]
 gi|126440920|ref|YP_001059595.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668]
 gi|126450648|ref|YP_001081004.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247]
 gi|126453661|ref|YP_001066876.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106a]
 gi|134277533|ref|ZP_01764248.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305]
 gi|167001768|ref|ZP_02267560.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20]
 gi|167720315|ref|ZP_02403551.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei DM98]
 gi|167816526|ref|ZP_02448206.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91]
 gi|167824921|ref|ZP_02456392.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 9]
 gi|167846438|ref|ZP_02471946.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           B7210]
 gi|167895016|ref|ZP_02482418.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894]
 gi|167903401|ref|ZP_02490606.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167911654|ref|ZP_02498745.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112]
 gi|167919652|ref|ZP_02506743.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           BCC215]
 gi|217420441|ref|ZP_03451946.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576]
 gi|226198927|ref|ZP_03794490.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812987|ref|YP_002897438.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           MSHR346]
 gi|238561611|ref|ZP_00441723.2| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei GB8 horse
           4]
 gi|242315443|ref|ZP_04814459.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106b]
 gi|254177849|ref|ZP_04884504.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399]
 gi|254184394|ref|ZP_04890984.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655]
 gi|254191427|ref|ZP_04897931.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195745|ref|ZP_04902171.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13]
 gi|254200256|ref|ZP_04906622.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH]
 gi|254209334|ref|ZP_04915680.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU]
 gi|254261445|ref|ZP_04952499.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710a]
 gi|254297059|ref|ZP_04964512.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e]
 gi|254357996|ref|ZP_04974269.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280]
 gi|52210286|emb|CAH36265.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52427200|gb|AAU47793.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 23344]
 gi|76581530|gb|ABA51005.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710b]
 gi|121228421|gb|ABM50939.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei SAVP1]
 gi|124293722|gb|ABN02991.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10229]
 gi|126220413|gb|ABN83919.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 668]
 gi|126227303|gb|ABN90843.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106a]
 gi|126243518|gb|ABO06611.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei NCTC 10247]
 gi|134251183|gb|EBA51262.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 305]
 gi|147749852|gb|EDK56926.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei FMH]
 gi|147750107|gb|EDK57178.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei JHU]
 gi|148027123|gb|EDK85144.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei 2002721280]
 gi|157807680|gb|EDO84850.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 406e]
 gi|157939099|gb|EDO94769.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698888|gb|EDP88858.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei ATCC 10399]
 gi|169652490|gb|EDS85183.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei S13]
 gi|184214925|gb|EDU11968.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 1655]
 gi|217395853|gb|EEC35870.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 576]
 gi|225929027|gb|EEH25051.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505250|gb|ACQ97568.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           MSHR346]
 gi|238524204|gb|EEP87638.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei GB8 horse
           4]
 gi|242138682|gb|EES25084.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1106b]
 gi|243062460|gb|EES44646.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia mallei PRL-20]
 gi|254220134|gb|EET09518.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           1710a]
          Length = 209

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLVRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +          N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LEALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGPLE 203


>gi|322376708|ref|ZP_08051201.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. M334]
 gi|321282515|gb|EFX59522.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. M334]
          Length = 200

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K RP    L  +++ +  + 
Sbjct: 2   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKHRPRDKALNLNIASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L ++F PGPLT++L+  +   +     + L T  FR+P   FT  LI 
Sbjct: 62  HFSKNQPAYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPFTLNLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + +  D  ++  G +STI+++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILEDFDQEVLGMEDDAFLT--GQDSTILDLSGDK-V 175

Query: 190 RILRPGGLEIETL 202
           +ILR G ++ E +
Sbjct: 176 KILRQGTIKREDI 188


>gi|307706538|ref|ZP_07643345.1| yrdC domain protein [Streptococcus mitis SK321]
 gi|307617993|gb|EFN97153.1| yrdC domain protein [Streptococcus mitis SK321]
          Length = 199

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 6/196 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y+IK+RP    L  +++ +  + 
Sbjct: 1   MDRIKQELENGGAVVLPTETVYGLFAKALDEKAVNHVYQIKRRPRDKALNLNIASLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P   T   +  
Sbjct: 61  YFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPTTLDLIR 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  +K V+
Sbjct: 119 ETGPLIGPSANISGQESGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-VK 175

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G ++ E +   +
Sbjct: 176 ILRQGAIKREDILARL 191


>gi|331695521|ref|YP_004331760.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950210|gb|AEA23907.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 214

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 5/193 (2%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLS 80
           G  + +PT+TVYG+  D+ + TA+R L   K R    P+   V   S +      V   +
Sbjct: 26  GNLVVLPTDTVYGIGCDAFSATAVRSLLAAKGRGPDMPVPVLVGSWSTIDGLVIGVPTAA 85

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             L + FWPG L+LVL    +  +         T   R+P       +     P+A+ SA
Sbjct: 86  RELIEAFWPGGLSLVLQHAPS--LAWDLGTTRGTVMLRMPLHPVALELLRDVGPMAVSSA 143

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           NRSG     +      + + + + + +DGG ++  + ST+V++  +   R+LR G + + 
Sbjct: 144 NRSGHAPAVDAA-DAVAQLGEHVAVYLDGGPTEENVPSTVVDLTADAP-RVLREGAVSVA 201

Query: 201 TLKRAISVELEYC 213
            +   +  E+   
Sbjct: 202 AISEVLGREVASA 214


>gi|126664113|ref|ZP_01735106.1| translation factor [Flavobacteria bacterium BAL38]
 gi|126623827|gb|EAZ94522.1| translation factor [Flavobacteria bacterium BAL38]
          Length = 206

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 13/209 (6%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I +      A++K    L  G  +  PT+TVYGL  D  N  A+ +L +IK     
Sbjct: 3   EIIKIYEDKPSEAAIKKVVSVLKDGGLVIYPTDTVYGLGCDITNSRALEKLAKIKGIKLE 62

Query: 58  NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                   S +S +  +   +D  +  + K   PGP T +L      +  P      KT 
Sbjct: 63  KANFSFVCSSLSNLSDYVKQIDTSTFKILKRALPGPYTFILP---GNNDLPREFRKKKTV 119

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173
             RVP      +++E  G+P+   S     + I  +    ++      ++ L+IDGG   
Sbjct: 120 GIRVPANNIALQIVEMLGNPIVSTSIRDEDEVIEYSTDPELIFEKWQNKVDLVIDGGYGD 179

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETL 202
             + STI+++   +   ++R G   ++ L
Sbjct: 180 -NVASTIIDLTGHEP-EVIREGKGSLDVL 206


>gi|323496967|ref|ZP_08101995.1| Sua5/YciO/YrdC family protein [Vibrio sinaloensis DSM 21326]
 gi|323318041|gb|EGA71024.1| Sua5/YciO/YrdC family protein [Vibrio sinaloensis DSM 21326]
          Length = 185

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
               +A   L  G  IA PTE V+G+  D  NP AI +L  +K+RP    LI   +    
Sbjct: 2   ENFDQALNALKQGEVIAYPTEGVFGVGCDPDNPEAIEKLLTLKQRPVEKGLILIAASYQQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     LS    K     WPGP+T ++    +  +    +    +   RV      +
Sbjct: 62  LLPYIDETQLSEEQLKRVHQTWPGPVTWIMPC--SDKVSSWVSGQFDSIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+   +G PL   SAN +G+      + +    +  ++  +++G        S I + + 
Sbjct: 120 KMCNAFGKPLTSTSANLTGEPPCMTTEEVYR-QLGDKLVAVLEGETGGRDKPSEIRDAKT 178

Query: 186 EKKVR 190
            + +R
Sbjct: 179 SQVLR 183


>gi|319939132|ref|ZP_08013496.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus
           1_2_62CV]
 gi|319812182|gb|EFW08448.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus
           1_2_62CV]
          Length = 196

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L +G  + +PTETVYGL   + +  A+  +Y++K RP    L  +VS +  + 
Sbjct: 1   MDKIEEVLSSGGAVVLPTETVYGLFCKALDEQAVSHVYDLKGRPREKALNLNVSSLEEIY 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
           + +   P  L  L + F PGPLT++L   +   +     + +KT  FRVP    T  LI 
Sbjct: 61  QFSKHQPQYLKKLYQAFLPGPLTIILQ--ANEQVPIWVNSGMKTIGFRVPSHPKTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G PL  PSAN SG+ S  N + I++     E+  I D      G +STI+++  E   
Sbjct: 119 KFG-PLIGPSANLSGKSSGVNFQQIMTD-FNHEVLGIEDDAF-LTGQDSTILDLSGE-TA 174

Query: 190 RILRPGGLEIETLKRAI 206
            ILR G +  E +   I
Sbjct: 175 YILRQGAVTCEEILAKI 191


>gi|257052622|ref|YP_003130455.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM
           12940]
 gi|256691385|gb|ACV11722.1| Sua5/YciO/YrdC/YwlC family protein [Halorhabdus utahensis DSM
           12940]
          Length = 198

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 10/204 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T  + L  A E + +G  +  PTETVYGL  D+ +  AI  ++E K+R   NPL   V+
Sbjct: 1   MTRDSDLTAAAEVVKSGGLVVYPTETVYGLGADALDTAAIEAVFETKRRDRDNPLSLGVA 60

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +     + S         + F PGP+T+V++      +    T        R+P     
Sbjct: 61  SVEAALDYVSPSVTEQRFMQEFLPGPVTVVVEGRD--PVPDALTGGRDRVGVRIPDHDLA 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L+E  G PL   SAN SGQ S+T+    L + I     +I+DGG +  G  ST+V+V 
Sbjct: 119 RELLERSG-PLTATSANVSGQPSVTDPAD-LDAEIRTAAGVILDGGETP-GTASTVVDVS 175

Query: 185 CEKKVRILRPGGLEIETLKRAISV 208
                  +   G   + ++  +  
Sbjct: 176 RG----TIHRRGANADAVEDWLET 195


>gi|225024541|ref|ZP_03713733.1| hypothetical protein EIKCOROL_01416 [Eikenella corrodens ATCC
           23834]
 gi|224942692|gb|EEG23901.1| hypothetical protein EIKCOROL_01416 [Eikenella corrodens ATCC
           23834]
          Length = 206

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  I  PT++ Y L     N  A+ R+  I++    + L    +D+S
Sbjct: 14  ERLVKQAAEIVRQGGVIVYPTDSCYALGCQMGNKEAMERILAIRQIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD       K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELGTYAKVDNSQFRQLKAATPGAYTFILPATKEVPNRTL-HPKRKTIGLRVPDNKIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   +     +       + + + +   + LIIDGG       +T++++    
Sbjct: 133 LAELGEPMLSCTLMLPEETEPQTDPYEIRNLLEHAVDLIIDGGWCGT-EPTTVIDMTNGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--IRQGA 198


>gi|308272719|emb|CBX29323.1| hypothetical protein N47_J03040 [uncultured Desulfobacterium sp.]
          Length = 253

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 10/220 (4%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     +   ++KA   + +G  +  P   +YGLA D+ N TA+++++EIK R   
Sbjct: 31  KIIKIDPDNPEPELIKKAASVIRSGGVVVFPARCLYGLAADAFNETAVQKVFEIKGRTEK 90

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            PL+       M+      + P++  + K FWPG +T++L+  +   +    TA      
Sbjct: 91  KPLLVLADSHLMISCIVKDITPMAQKIMKSFWPGLVTIILE--ANDSLCDNLTAGTGKIG 148

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P       L++  G P+   SAN SG     ++   +   I +++ LI+D G  K G
Sbjct: 149 VRKPGHPVALALVKAVGGPVTGTSANPSGASGCYDITD-IDPEIAEKVDLILDAGTLKGG 207

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215
             ST+V+V  E  V I+R G +    +  A      Y   
Sbjct: 208 TGSTVVDVTGEVPV-IIREGEVSGNEILAASGASAVYETS 246


>gi|261253232|ref|ZP_05945805.1| YrdC family protein [Vibrio orientalis CIP 102891]
 gi|260936623|gb|EEX92612.1| YrdC family protein [Vibrio orientalis CIP 102891]
          Length = 206

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  +  KT   RVP       L
Sbjct: 74  ELSLYARVDNGAFRLLKNNTPGPFTFIFKGTKEVP-RRLMNSKRKTIGIRVPDNRIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   +  I++GG       +T+++   ++
Sbjct: 133 LEALGEPLMSTSLILPGNDITESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVIDFSDDE 191

Query: 188 KVRILRPG 195
             ++ R G
Sbjct: 192 P-KVARLG 198


>gi|154509271|ref|ZP_02044913.1| hypothetical protein ACTODO_01796 [Actinomyces odontolyticus ATCC
           17982]
 gi|293189725|ref|ZP_06608441.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus
           F0309]
 gi|153798905|gb|EDN81325.1| hypothetical protein ACTODO_01796 [Actinomyces odontolyticus ATCC
           17982]
 gi|292821315|gb|EFF80258.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus
           F0309]
          Length = 224

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A   L  G  + +PT+TVYG+  D+ NP A+  +   K R    P    V+ + 
Sbjct: 18  EADLARAQRELRDGHLLVVPTDTVYGIGADAANPEAVAAVLAAKGRGRQMPPPVLVASVD 77

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +      +   +  LA+ FWPG LTL+L            T    T   R+P       
Sbjct: 78  AIDLLCVDIPEAARALARAFWPGGLTLILRARPDLGWDLGETGG--TIGVRMPNQAALLR 135

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN +GQ   T+V+  +       +   +DGG ++    S+IV+   E 
Sbjct: 136 LLHDFGPMAVTSANLTGQPPATSVEQAVG-YFGTRVSAYLDGGPTQGSTASSIVDFAHET 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETS 218
             R+LR G + ++ L  A  V +       S
Sbjct: 195 P-RVLRFGTISLDDLSAAAGVPIAPVEGAAS 224


>gi|110834252|ref|YP_693111.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
 gi|110647363|emb|CAL16839.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax borkumensis SK2]
          Length = 207

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 3/195 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E +  G  IA PT+T Y L        A+ RL  +++    +       D+S
Sbjct: 14  PRLIRQAVEVIRGGGLIAYPTDTTYALGCGIGEKNALDRLIRLRQLDKKHEFTLLCHDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PGP T +L   +      L     +T   RVP     + L
Sbjct: 74  ALAIYAKVDNPDYRLLKAHTPGPYTFILQGTTEVP-RRLMHPKKRTIGIRVPDHAICQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G P+   + +             +   +   + L+IDGG     +E+T++++   +
Sbjct: 133 LAEHGEPIMTSTCHLPNDEFPLTDPQDVRDFLDHHVDLVIDGGFCGT-VETTVISLSQGE 191

Query: 188 KVRILRPGGLEIETL 202
              ++R G   I+ +
Sbjct: 192 GPEVVREGAGPIDAI 206


>gi|332361223|gb|EGJ39027.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1056]
          Length = 196

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L HL + F PGPLT++L   +   +     +  +T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLDHLYQAFLPGPLTIILQ--ANDRVPAWINSGKETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   S  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDD-SLTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGVITREDI 187


>gi|224369573|ref|YP_002603737.1| hypothetical protein HRM2_24790 [Desulfobacterium autotrophicum
           HRM2]
 gi|223692290|gb|ACN15573.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 202

 Score =  174 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L  G  IA PT+T YG+  D  N  AI ++Y+IK+R    P     +D+ 
Sbjct: 12  PRLISQIVDALRQGGIIAYPTDTHYGIGCDIMNKKAIEKVYQIKQRSKNQPFSFICADLK 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + ++A V   +    K   PGP T +L    +  +  +     KTA  RVP       +
Sbjct: 72  HISEYAKVSTFAYRNMKRLLPGPYTFILQ--GSKLVPKMMLTKRKTAGIRVPDNAIALAI 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            +  G+P+   SA             +L     + + L++DGG    G +S++V++  + 
Sbjct: 130 AKELGNPVLSTSATGPDD-RPFEDPSLLHDWFGQRLELVVDGGPVP-GTDSSVVSLIDDV 187

Query: 188 KVRILRPGGLEI 199
              I+R G  ++
Sbjct: 188 P-EIIRYGAGDV 198


>gi|167563323|ref|ZP_02356239.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           EO147]
          Length = 209

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELAAFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +   S      N    + + + K+  L+IDGG       ST++++  ++
Sbjct: 133 LEALGQPLLGTTLILSPDDEPLNDPEEIRTRLEKQADLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGPLE 203


>gi|269219855|ref|ZP_06163709.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269210760|gb|EEZ77100.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 205

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 6/206 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+++   D+ A   A   +  GL + +PT+TVYGL  D R+P A+ RL   K R    P 
Sbjct: 1   MRVIDSADAAAAGAAAAAVREGLLVVLPTDTVYGLGADPRSPRAVDRLLTAKGRGRDKPS 60

Query: 61  ICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
              V+ ++  ++ A     ++  L   FWPG LTLVL    +  +         T   R+
Sbjct: 61  PVLVASVAQAEELAREAPDVAKALMAEFWPGALTLVLP---SERLGWDLGETNGTIALRM 117

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P       +     PLA+ SAN SG+     V   +   +  ++ + +DGG    G  ST
Sbjct: 118 PNHPAALELLKEAGPLAVSSANLSGRPPAATVGEAV-EQLGGKVAVYLDGGPCPGGAPST 176

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205
           IV+      +R+LR GG+    L R 
Sbjct: 177 IVSF-DGGLMRVLREGGVGRGELARF 201


>gi|152979360|ref|YP_001344989.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus succinogenes
           130Z]
 gi|150841083|gb|ABR75054.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus succinogenes
           130Z]
          Length = 207

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 7/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A E L  G  I  PT++ Y L     +  A+ R+  I+  P  +      SD+S
Sbjct: 14  SRLINQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRHLPQGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A+V  ++  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSHYATVSNVAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           ++T G P+   S    G+  IT +    +   + +++ LII GG   +G E +T+V++  
Sbjct: 133 LKTLGEPILSCSLMLPGEDHITQSDPEEIRDRLERQVELIIHGGY--LGQEPTTVVDLTD 190

Query: 186 EKKVRILRPGGLEIE 200
           E  V ILR G   +E
Sbjct: 191 ETPV-ILREGSGSVE 204


>gi|326800728|ref|YP_004318547.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
 gi|326551492|gb|ADZ79877.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
          Length = 235

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 8/196 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +  A+ +    L  G  I  PT+TVYG+  D  N  AI  L  I+  +P    L     D
Sbjct: 40  NERAIEQVVAVLKKGGIIIYPTDTVYGIGCDITNQKAIETLCRIRGIKPEKANLSFICYD 99

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           ++ + ++   +D  +  L K   PGP T + +  ++  +  L ++N KT   RVP     
Sbjct: 100 LTDIAQYTKPIDTATFRLLKKSLPGPFTYIFN--ASNQVPKLMSSNKKTVGIRVPDNNIA 157

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           ++++   G+P+   S +   +I   +    ++       + L+IDGG       ST+V+ 
Sbjct: 158 REIVRQLGNPIVSASIHDEDEILEYSTDPELIHEKFQNLVDLVIDGGYGG-NEASTVVDC 216

Query: 184 QCEKKVRILRPGGLEI 199
               +  ++R G  ++
Sbjct: 217 TS-GEFDVIRQGKGDL 231


>gi|170694767|ref|ZP_02885918.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M]
 gi|170140398|gb|EDT08575.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia graminis C4D1M]
          Length = 211

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + ++ G  +A+PT++ Y LA    +  A+ RL  I+       L   V D+S
Sbjct: 14  PRLVKQAVQIINDGGVVALPTDSSYALACHLDDKDAVERLRRIRGLDEKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          LS  + KT   RVP    T  +
Sbjct: 74  ELANFAMVDNRQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+ +  N    + + + K++ L+IDGG   +   ST++++  ++
Sbjct: 133 LGELGQPLLGSTLILPGETAPLNEPEEIRARLEKQLDLVIDGGAC-VCEPSTVIDLTGDE 191

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 192 PVLVRAGRG 200


>gi|90021364|ref|YP_527191.1| hypothetical protein Sde_1719 [Saccharophagus degradans 2-40]
 gi|89950964|gb|ABD80979.1| Sua5/YciO/YrdC/YwlC [Saccharophagus degradans 2-40]
          Length = 207

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  SI   N     + ++ + +  G  IA PT++ Y L     +  A+ R+  I++    
Sbjct: 3   QFFSIHPENPQARLISQSVDIVRRGGLIAYPTDSAYALGCHIGDKLALDRIRAIRQLDKD 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD     L K   PG  T +L   S      L     KT   
Sbjct: 63  HNFTLMCRDLSELANYAKVDNAVFRLIKSHTPGAYTFILPATSEVP-RRLMHPKRKTLGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L++  G PL   S    G        + +  S+  ++ L+IDGG   +  
Sbjct: 122 RVPNNPIALALMDALGEPLMSSSLILPGDTVPLTDPYDIRESLEHQLELVIDGGYCGM-E 180

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            +T+V++  ++ V + R G 
Sbjct: 181 PTTVVDLTGDEPV-VTRVGC 199


>gi|268326242|emb|CBH39830.1| conserved hypothetical protein, containing yrdC domain [uncultured
           archaeon]
          Length = 234

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 9/192 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + +R A   +  G  I  PTETVYGL  D+ + TA+R++Y+IK+R    P+   VS   
Sbjct: 24  ESQIRAAIAIIKRGGTIVYPTETVYGLGADALSETAVRKVYKIKRRDVSQPISVAVSSFE 83

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           M+ K A  DP    +     PGP+T++L       +  L TA       R P       I
Sbjct: 84  MLHKVAYTDPGISEILFALLPGPVTVLLKKKEI--VPALLTAESDVLGVRFPDNEIATRI 141

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK- 187
                P+   SAN SG+   T V+ +    +   + +II G   K  + ST+V++     
Sbjct: 142 IEETGPITATSANVSGRTPPTCVEEVEIKFL---VDIIIHGSKCKYSMPSTVVDMTTANE 198

Query: 188 ---KVRILRPGG 196
              K++I R G 
Sbjct: 199 GKAKIKIKRRGA 210


>gi|330811305|ref|YP_004355767.1| hypothetical protein PSEBR_a4356 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379413|gb|AEA70763.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 209

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E +  G  +  PT++ Y +     +  A+ R+  +++    
Sbjct: 3   QFFQIHPENPQARLIKQAVEIIRGGGVVVYPTDSSYAIGCQIGDKNAVERVRRLRQLDDK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +      SD+S +   A +D  +  L K   PGP T +L+         L     +T   
Sbjct: 63  HNFALICSDLSQLGLFAKIDTGTFRLLKAHLPGPYTFILNATREVP-RLLLHPKKRTIGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+   G PL   +    G+       + +   +  ++ LIIDGG   +  
Sbjct: 122 RVPSHPIALALLAELGEPLMSVTLIMPGESEPLTDPYEMRQILEHQVDLIIDGGFGGMS- 180

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            ST++N+  + + +++R G 
Sbjct: 181 ASTVINL-ADGEPQVVRVGC 199


>gi|323492457|ref|ZP_08097605.1| hypothetical protein VIBR0546_15511 [Vibrio brasiliensis LMG 20546]
 gi|323313244|gb|EGA66360.1| hypothetical protein VIBR0546_15511 [Vibrio brasiliensis LMG 20546]
          Length = 206

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 3/182 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  EISLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   +  I++GG       +T+V+   ++
Sbjct: 133 LEALGEPLMSTSLILPGSDVTESDPEDIRDKLEHAVDCILNGGYLGE-QPTTVVDFSEDE 191

Query: 188 KV 189
            V
Sbjct: 192 PV 193


>gi|34763117|ref|ZP_00144087.1| SUA5 protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887215|gb|EAA24316.1| SUA5 protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 217

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 9/194 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V  
Sbjct: 25  IKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSD 84

Query: 79  ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
               L   LAK FWPG LT++L       I  +  +   T   R+P      K+IE  G 
Sbjct: 85  KNKNLLEKLAKAFWPGALTVILKRKEH--IPSIMVSGGDTIGVRIPNLDLAIKIIELAGG 142

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR
Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200

Query: 194 PGGLEIETLKRAIS 207
            G + I  +++ I 
Sbjct: 201 KGAISIGEIEKIIG 214


>gi|302529791|ref|ZP_07282133.1| SUA5/YciO/YrdC/YwlC [Streptomyces sp. AA4]
 gi|302438686|gb|EFL10502.1| SUA5/YciO/YrdC/YwlC [Streptomyces sp. AA4]
          Length = 228

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 5/206 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           + +  L  A   + +   + +PT+TVYG+  D+ +  A++ L   K R    P+   V  
Sbjct: 24  SRAEGLSAAAAAVRSSRLVVLPTDTVYGIGADAFDSGAVQALLRAKNRGPDMPVGVLVGS 83

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            S V      V P +  L + FWPG L++VL    +   +     +  T   R+P     
Sbjct: 84  WSTVDGLVLGVPPQARALIEAFWPGDLSIVLPHAPSLQWN--LGNSRGTVMLRMPLHPVA 141

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             +     P+A+ SAN SG+   + V+      +   + + +DGG S   + S+IV++  
Sbjct: 142 LELLRDVGPMAVSSANVSGRSPASTVEDA-QEQLGDSVSVYLDGGSSGETVASSIVDLTG 200

Query: 186 EKKVRILRPGGLEIETLKRAISVELE 211
           +K + +LR G +    +   I V  E
Sbjct: 201 DKPL-VLREGTVTKAAIAEVIGVAEE 225


>gi|161524350|ref|YP_001579362.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC
           17616]
 gi|189350896|ref|YP_001946524.1| putative translation factor [Burkholderia multivorans ATCC 17616]
 gi|221198404|ref|ZP_03571450.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2M]
 gi|221208919|ref|ZP_03581916.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2]
 gi|221214750|ref|ZP_03587719.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD1]
 gi|160341779|gb|ABX14865.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans ATCC
           17616]
 gi|189334918|dbj|BAG43988.1| putative translation factor [Burkholderia multivorans ATCC 17616]
 gi|221165289|gb|EED97766.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD1]
 gi|221171202|gb|EEE03652.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2]
 gi|221182336|gb|EEE14737.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia multivorans CGD2M]
          Length = 210

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +A+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAVEIVNKGGVVAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD       K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  + 
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDV 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGALE 203


>gi|332360648|gb|EGJ38457.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK49]
          Length = 196

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ I  + 
Sbjct: 1   MDKIEKTLVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +++  + D   +  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEQVSGVEDD-TALTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|154489839|ref|ZP_02030100.1| hypothetical protein PARMER_00068 [Parabacteroides merdae ATCC
           43184]
 gi|218258263|ref|ZP_03474665.1| hypothetical protein PRABACTJOHN_00320 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089281|gb|EDN88325.1| hypothetical protein PARMER_00068 [Parabacteroides merdae ATCC
           43184]
 gi|218225606|gb|EEC98256.1| hypothetical protein PRABACTJOHN_00320 [Parabacteroides johnsonii
           DSM 18315]
          Length = 202

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 8/193 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDIS 68
             + K    +  G  +  PT+TVY +  D+ N  A+ ++ ++K   P  + L     D+S
Sbjct: 13  REIDKVVNIMRDGGLVIYPTDTVYAIGCDALNVRAVEKICQLKGVNPQKSNLSIICYDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + ++A V   +  L K   PG  T +L   S     P    N K    RVP     + L
Sbjct: 73  NLSEYAKVSNAAFKLMKKNLPGAFTFILPTSSEL---PKIYKNRKEVGIRVPDNNIIRTL 129

Query: 128 IETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +   G+P+   S +   +I   +    ++       + ++IDGG       ST++N   +
Sbjct: 130 VRELGNPILTMSLHDKDEIIEYSTDPELIEEKYENLVDIVIDGGYGGT-EASTVINCTTD 188

Query: 187 KKVRILRPGGLEI 199
               I+R G  E+
Sbjct: 189 D-FEIIRQGKGEL 200


>gi|330817634|ref|YP_004361339.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3]
 gi|327370027|gb|AEA61383.1| Sua5/YciO/YrdC/YwlC [Burkholderia gladioli BSR3]
          Length = 211

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E +  G  IA+PT++ Y LA    + TA+ R+ +I+       L   V D+S
Sbjct: 14  PRLVRQAVEIVKQGGVIAMPTDSSYALACHLDDKTAVERVRKIRGLDDKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          LS  + KT   RVP    T  +
Sbjct: 74  ELANFAMVDNHQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGLRVPDHAITLAV 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +ET G PL   +          N    +   + K++ L+IDGG       STIV++  + 
Sbjct: 133 LETLGQPLLGTTLILPPDSDPLNDPEEIRERLEKQVDLVIDGGACPR-EPSTIVDLTGDA 191

Query: 188 KVRILRPGGLEIE 200
            V ++R G   +E
Sbjct: 192 PV-LVRAGRGSLE 203


>gi|88859929|ref|ZP_01134568.1| putative RNA binding protein with YrdC/RibB domain
           [Pseudoalteromonas tunicata D2]
 gi|88817923|gb|EAR27739.1| putative RNA binding protein with YrdC/RibB domain
           [Pseudoalteromonas tunicata D2]
          Length = 206

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 5/205 (2%)

Query: 1   MQI-MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI +    +  +R+A E +  G  I  PT++ Y L     N TA+ R+  I+     + 
Sbjct: 5   FQIHVDNPQTRLIRQAIEVIQKGGVIVYPTDSGYALGCSIGNKTAMERIQRIRSLEKHHN 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +  +A VD     L K   PG  T +           L     KT   RV
Sbjct: 65  LTLVCCDLSELATYARVDNQMFRLVKNNTPGAYTFIFKGTKEVP-KRLLNDKKKTIGIRV 123

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+ L+   G P+   S    GQ    +   ++ S + K++ LIIDGG   I   +
Sbjct: 124 PNHKITQALLAELGEPIMSCSLILPGQEHTESDPEVIRSLLEKQVDLIIDGGY-LIEQAT 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           T++++  +  V ILR G  ++   +
Sbjct: 183 TVIDL-SDDSVEILRVGCGDVSPFE 206


>gi|325287671|ref|YP_004263461.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489]
 gi|324323125|gb|ADY30590.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489]
          Length = 206

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 9/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +++A++K  + L  G  +  PT+TVYGL  D  N  A+ ++  IK             +D
Sbjct: 13  NADAIKKVVDVLKKGGLVIYPTDTVYGLGCDITNTKALEKIARIKGVKLAKANFSFICAD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S + ++   +D  +  + K   PGP T +L   +     P      KT   RVP     
Sbjct: 73  LSNLSEYVKQIDTATFKILKRALPGPYTFILPGNNNL---PKDFKKKKTVGIRVPDNSIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +++  G+P+   S     + +  T    ++       + ++IDGG       ST+V++
Sbjct: 130 NAMVQALGNPIVSTSIRDEDELLEYTTDPELIYEKWDNLVDIVIDGGYGD-NTASTVVDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
             + +  I+R G   I+
Sbjct: 189 -SDGEPEIIREGKGSID 204


>gi|262392839|ref|YP_003284693.1| YrdC family protein [Vibrio sp. Ex25]
 gi|262336433|gb|ACY50228.1| YrdC family protein [Vibrio sp. Ex25]
          Length = 185

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +    L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2   DNFEQVLNALQQGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61

Query: 70  VKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +       P  L      WPGP T ++   ++  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+   +G PL   SAN SG     N + +    +  ++  I+ G  S     S I + + 
Sbjct: 120 KMCNAFGKPLTSTSANLSGLPPCMNTEEV-EQQLGDKLVAILRGETSGRDKPSEIRDAKT 178

Query: 186 EKKVR 190
            + +R
Sbjct: 179 SQILR 183


>gi|312375719|gb|EFR23031.1| hypothetical protein AND_13789 [Anopheles darlingi]
          Length = 247

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 8/198 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +++ITD +A+R+A   L++G  IA+PT+TVYGLA  + NP AI++LY IK R    P+  
Sbjct: 26  LIAITDGSAIRQAANLLESGQVIALPTDTVYGLACSANNPAAIQKLYAIKGRHEQKPVAI 85

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V+D   ++     D L   L +   PG +T+V+      D +P     ++    R+P  
Sbjct: 86  CVADFDDLRYWGQADHLPDALLRQLLPGAVTIVVRKSLHLD-NPFLNPGIEKIGIRIPDF 144

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLE 177
            F + +   + +P+A+ SAN+S   S  NV       +   +  + DGG      +    
Sbjct: 145 KFIRDVSRAFRYPIALTSANKSACQSTLNVHE--FQCLWSSLGAVFDGGQLGQSDEQRAA 202

Query: 178 STIVNVQCEKKVRILRPG 195
           ST++++  +   +++R G
Sbjct: 203 STVIDLSEDGSYQLIRAG 220


>gi|261349624|ref|ZP_05975041.1| Sua5/YciO/YrdC/YwlC family protein [Methanobrevibacter smithii DSM
           2374]
 gi|288861582|gb|EFC93880.1| Sua5/YciO/YrdC/YwlC family protein [Methanobrevibacter smithii DSM
           2374]
          Length = 193

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 10/198 (5%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+I+       D   + +A + L  G  I  PT+TVYGL  +  N  A++R+Y IKKR  
Sbjct: 1   MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSY 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           + P+   VS    +   +      L+    + PGP T +L        H   T+      
Sbjct: 61  LKPISLLVSSKDAIPLVSRASVNQLNFMDKYLPGPYTFILKKSKIVPRH--LTSGSANVG 118

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP       L + +  P+   SAN S + +  +    +   +  E+ L+ID G  K  
Sbjct: 119 IRVPESEIACNLAKLF--PITTTSANISSE-NTLDTPEEILEQLGCEVDLVIDVGPLKSK 175

Query: 176 LESTIVNVQCEKKVRILR 193
             STI+++  E+ + + R
Sbjct: 176 NPSTIIDLTAEEPIFVKR 193


>gi|15641191|ref|NP_230823.1| hypothetical protein VC1178 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587790|ref|ZP_01677549.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728251|ref|ZP_01681284.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|153215328|ref|ZP_01949941.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153819097|ref|ZP_01971764.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823502|ref|ZP_01976169.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|153826680|ref|ZP_01979347.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153829624|ref|ZP_01982291.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|183179583|ref|ZP_02957794.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227081350|ref|YP_002809901.1| hypothetical protein VCM66_1133 [Vibrio cholerae M66-2]
 gi|229505228|ref|ZP_04394738.1| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286]
 gi|229511102|ref|ZP_04400581.1| hypothetical protein VCE_002509 [Vibrio cholerae B33]
 gi|229515559|ref|ZP_04405018.1| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21]
 gi|229518221|ref|ZP_04407665.1| hypothetical protein VCC_002245 [Vibrio cholerae RC9]
 gi|229529734|ref|ZP_04419124.1| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)]
 gi|229608247|ref|YP_002878895.1| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236]
 gi|254226704|ref|ZP_04920281.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|254291997|ref|ZP_04962776.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254848304|ref|ZP_05237654.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255745588|ref|ZP_05419536.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262158339|ref|ZP_06029455.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
 gi|262169497|ref|ZP_06037189.1| YrdC family protein [Vibrio cholerae RC27]
 gi|262191634|ref|ZP_06049812.1| YrdC family protein [Vibrio cholerae CT 5369-93]
 gi|297578778|ref|ZP_06940706.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298498720|ref|ZP_07008527.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757]
 gi|9655654|gb|AAF94337.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547954|gb|EAX58035.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629502|gb|EAX61928.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124114771|gb|EAY33591.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|125620765|gb|EAZ49122.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|126510380|gb|EAZ72974.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518970|gb|EAZ76193.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|148874900|gb|EDL73035.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149739542|gb|EDM53770.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150422074|gb|EDN14042.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|183012994|gb|EDT88294.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227009238|gb|ACP05450.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229333508|gb|EEN98994.1| hypothetical protein VCG_002831 [Vibrio cholerae 12129(1)]
 gi|229344936|gb|EEO09910.1| hypothetical protein VCC_002245 [Vibrio cholerae RC9]
 gi|229347328|gb|EEO12288.1| hypothetical protein VCB_003217 [Vibrio cholerae TMA 21]
 gi|229351067|gb|EEO16008.1| hypothetical protein VCE_002509 [Vibrio cholerae B33]
 gi|229357451|gb|EEO22368.1| hypothetical protein VCF_000436 [Vibrio cholerae BX 330286]
 gi|229370902|gb|ACQ61325.1| hypothetical protein VCD_003165 [Vibrio cholerae MJ-1236]
 gi|254844009|gb|EET22423.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255736663|gb|EET92060.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262022310|gb|EEY41019.1| YrdC family protein [Vibrio cholerae RC27]
 gi|262029780|gb|EEY48428.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
 gi|262032476|gb|EEY51036.1| YrdC family protein [Vibrio cholerae CT 5369-93]
 gi|297536372|gb|EFH75205.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297543053|gb|EFH79103.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio cholerae MAK 757]
 gi|327483879|gb|AEA78286.1| YciO family [Vibrio cholerae LMA3894-4]
          Length = 206

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N   + R+ +I++    +       D+S
Sbjct: 14  TRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPNNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   + +I++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190

Query: 188 KVRILRPGG 196
           +V + R G 
Sbjct: 191 EVVVARVGA 199


>gi|332671311|ref|YP_004454319.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484]
 gi|332340349|gb|AEE46932.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484]
          Length = 222

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I S +D +    A+ +A   +  G  + +PT+TVYG+  D+  P A++ L + K R   
Sbjct: 4   RIRSASDPSTWGPAIDEAVAAVSRGALVVLPTDTVYGIGADAFTPPAVQALLDAKGRGRQ 63

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P    + D+  +   A  V   +  LA+ FWPG LTL++    +       T    T  
Sbjct: 64  MPPPVLIPDVRTLDGLATDVPDAARALAEAFWPGGLTLIVHAQPSLAWDLGETNG--TVA 121

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            RVP   T   +     P+A+ SANR+G  +    +    + +   + + +D G +   +
Sbjct: 122 LRVPDHPTALALLRRTGPMAVSSANRTGSPAAVTAQDA-HAQLGDSVAVYLDAGDAPGQV 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            STIV+   +  +R++R G L +E L
Sbjct: 181 ASTIVDATGD-VLRLVRAGALTLEQL 205


>gi|149012961|ref|ZP_01833850.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|303255578|ref|ZP_07341629.1| hypothetical protein CGSSpBS455_08777 [Streptococcus pneumoniae
           BS455]
 gi|147763114|gb|EDK70055.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP19-BS75]
 gi|301801856|emb|CBW34574.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
 gi|302597434|gb|EFL64529.1| hypothetical protein CGSSpBS455_08777 [Streptococcus pneumoniae
           BS455]
          Length = 200

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 2   IDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|284032940|ref|YP_003382871.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836]
 gi|283812233|gb|ADB34072.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836]
          Length = 295

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 8/214 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A R A + ++AG  + +PT+TVYGLA D+    A++RL + K R    P    +S +  +
Sbjct: 26  AYRAAVDAIEAGDLVVLPTDTVYGLAADAFKADAVQRLLDAKGRGRDMPPPVLISVVESL 85

Query: 71  KKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
              A+  P +   L + FWPG LT++     +  +         T   RVP     + + 
Sbjct: 86  DALATDVPEAGRKLCEEFWPGALTVICHAQGS--LMWDLGDTHGTVALRVPDHENTRELL 143

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           +   PLA+ SANRSGQ +  +V       +   + + +DGG    G  STIV++  +   
Sbjct: 144 SRTGPLAVSSANRSGQPAALDVYDA-EEQLADSVAVYLDGGAVSGGEPSTIVDLTGDVP- 201

Query: 190 RILRPGGLEIETLKRAI---SVELEYCVDETSTP 220
            ++R G L +  +++ +   + +LE        P
Sbjct: 202 HVVRIGALSMAQIRKVVPEATTDLEPAEKPAEEP 235


>gi|189485673|ref|YP_001956614.1| Sua5-related translation factor [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287632|dbj|BAG14153.1| Sua5-related translation factor [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 202

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 7/204 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  D  A +K  E +  G    +PT+TVYG AVD+ N  A + +Y+IK R      I  
Sbjct: 5   ISSRDKMAYKKVAEVIRNGGIAIVPTDTVYGFAVDAFNIEAQKVVYKIKGRSHKKSFILM 64

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           V DI  ++    +   +L +AK FWPG LTL+L    TT++  + +   K    R+P   
Sbjct: 65  VPDIESIRILVEIPEKALKIAKRFWPGQLTLILP---TTEMGKILSGGKKDLGVRIPDSK 121

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           F  KL++  G P+   S N S + S  N+   L     + + + +DGG  +   EST+++
Sbjct: 122 FMLKLLKEMGSPVFTTSVNMSNKKSAKNIDETLR--FDEMVDIAVDGGQCRFSFESTVID 179

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           +  +    ++R G L+ + + + I
Sbjct: 180 M-VKFPYMVVRRGCLDTDKILKCI 202


>gi|292654433|ref|YP_003534330.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2]
 gi|291371068|gb|ADE03295.1| Sua5/YciO/YrdC/YwlC family protein [Haloferax volcanii DS2]
          Length = 199

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 9/206 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ +++A   +  G  +  PTETVYG+  D+ N  A+ R+++IK R   NPL     D+ 
Sbjct: 2   SDDVQRAAAAIRRGEAVVYPTETVYGMGADATNADAVERVFDIKGRDRDNPLSAGFPDVD 61

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
              +   VD       + F PGP+T+V++   +  +     A       R+P       L
Sbjct: 62  AALELVEVDDREEAFMRRFLPGPVTVVVERRDS--LPDALVAGKDRIGVRIPDHELALAL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
               G P+   SANRSG  SIT+    LS  I + + +++DGG +  G EST+V+     
Sbjct: 120 FRASGTPVTATSANRSGTGSITHPSQ-LSDEIREAVAVVLDGGTTP-GTESTVVD---PG 174

Query: 188 KVRILRPGGLEIETLKRAISVELEYC 213
           +  + R G +  + ++  +    +  
Sbjct: 175 RGVVHRRGAM-ADDIEAWLDEHDDDA 199


>gi|242036585|ref|XP_002465687.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor]
 gi|241919541|gb|EER92685.1| hypothetical protein SORBIDRAFT_01g043750 [Sorghum bicolor]
          Length = 275

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL   V+D+S
Sbjct: 70  KDHVLKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVADVS 129

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + + A VD L   L     PGP+T+VL     + +       L +   RVP   F + +
Sbjct: 130 DISRFALVDHLPHGLLDSLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSI 189

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186
               G  LA+ SAN SGQ S  +VK      +      + DGG+   G   STIV++   
Sbjct: 190 ARGAGSALALTSANLSGQPSSVSVKD--FEGLWPHCSCVFDGGVLPSGRAGSTIVDLITP 247

Query: 187 KKVRILRPGGLEIET 201
              +ILR G    ET
Sbjct: 248 GVYKILRDGSSRKET 262


>gi|260598146|ref|YP_003210717.1| hypothetical protein CTU_23540 [Cronobacter turicensis z3032]
 gi|260217323|emb|CBA31309.1| Uncharacterized protein yciO [Cronobacter turicensis z3032]
          Length = 206

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S
Sbjct: 14  PRLIKQAVEIVRKGGVIVYPTDSGYALGCKLEDKGAMERICRIRDLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +   + K++ LII GG       +T+V++  + 
Sbjct: 133 LEALDEPMLSTSLMLPGSDFTESDPDEIKDRLEKQVDLIIHGGYLGQ-QPTTVVDLTDDA 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLREG 198


>gi|254381732|ref|ZP_04997096.1| translation factor SUA5 [Streptomyces sp. Mg1]
 gi|194340641|gb|EDX21607.1| translation factor SUA5 [Streptomyces sp. Mg1]
          Length = 214

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LR+A + +  G  + +PT+TVYG+  D+ +P A+ R+   K R    P    V    
Sbjct: 14  AEGLREAADAVRRGELVVLPTDTVYGVGADAFSPDAVARVLRAKGRGRQMPSPVLVGSPD 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +      +   +  L   FWPG LTLV     +  I         T   R+P       
Sbjct: 74  ALDGLVIDLSVQARELIDAFWPGGLTLVARHEPS--IKWDLGETHGTVAIRMPAHPVAIS 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PLA+ SAN +G+ S  +    L + +   + + +D G +   + S+IV+V  + 
Sbjct: 132 LLDQTGPLAVSSANLTGRPSPQDCDAAL-AMLGDTVAVYLDAGPTPADVPSSIVDVTAKT 190

Query: 188 KVRILRPGGLEIETLKRA 205
            V +LR G L    L+  
Sbjct: 191 PV-LLREGALSAARLREV 207


>gi|284036531|ref|YP_003386461.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
 gi|283815824|gb|ADB37662.1| Sua5/YciO/YrdC/YwlC family protein [Spirosoma linguale DSM 74]
          Length = 206

 Score =  173 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           D   +    + L  G  I  PT+T+YG+  D  N  A+ R+  IK  +PA N       D
Sbjct: 14  DPRRIEHIVKALRDGAVIIYPTDTIYGMGCDIHNTRAVERVARIKGIKPAKNDFSFICYD 73

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +S +  +A V   +  L K   PGP T +L+  +T  +  +  +N KT   RVP     +
Sbjct: 74  LSHIADYARVGNQAFKLMKKVLPGPFTFILE--ATGSVPKILNSNKKTVGIRVPDNDIPR 131

Query: 126 KLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++   G+P+   S     +I   +    ++      ++ ++IDGG     + STIV+  
Sbjct: 132 QIVHELGNPIITTSIRDEDEIIEYSTDPELIFEKFQNQVDMVIDGGYGG-NVASTIVDAT 190

Query: 185 CEKKVRILRPG 195
            +    I+R G
Sbjct: 191 DDN-FSIIRQG 200


>gi|153835312|ref|ZP_01987979.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio harveyi HY01]
 gi|156975029|ref|YP_001445936.1| hypothetical protein VIBHAR_02755 [Vibrio harveyi ATCC BAA-1116]
 gi|148868177|gb|EDL67330.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio harveyi HY01]
 gi|156526623|gb|ABU71709.1| hypothetical protein VIBHAR_02755 [Vibrio harveyi ATCC BAA-1116]
          Length = 206

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 3/182 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNSAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   +   + +I++GG       +T+++    +
Sbjct: 133 LEALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDFSEGE 191

Query: 188 KV 189
            V
Sbjct: 192 SV 193


>gi|113460885|ref|YP_718952.1| translation factor SUA5 [Haemophilus somnus 129PT]
 gi|170717433|ref|YP_001784533.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus somnus 2336]
 gi|112822928|gb|ABI25017.1| translation factor SUA5 [Haemophilus somnus 129PT]
 gi|168825562|gb|ACA30933.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus somnus 2336]
          Length = 207

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 5/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S
Sbjct: 14  SRLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVKIRQLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  ++ V+     L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYSVVNNSVYRLIKNNTPGRYTFILSATKELP-RRLMTSKRKTIGIRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +++ G P+   S    G+   T +    +   +  ++ LII GG       +T+V++  +
Sbjct: 133 LKSLGEPILSCSLMLPGEEYTTQSDPEEIRDRLEHQVDLIIHGGYLSQ-QPTTVVDLTED 191

Query: 187 KKVRILRPGGLEI 199
             V ILR G  +I
Sbjct: 192 NPV-ILREGSGDI 203


>gi|325689726|gb|EGD31730.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK115]
          Length = 196

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP+   L  +V+ +  + 
Sbjct: 1   MDKIEKNLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPSDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  NFSKNRPCYLDQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPNHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D      G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDDF-LTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|163803031|ref|ZP_02196917.1| putative translation factor [Vibrio sp. AND4]
 gi|159173205|gb|EDP58034.1| putative translation factor [Vibrio sp. AND4]
          Length = 206

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNSAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   +   + +I++GG       +T+++   E 
Sbjct: 133 LEALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDF-SEG 190

Query: 188 KVRILRPGGLEIETLK 203
           +  + R G  +  + +
Sbjct: 191 EAVVARVGSGDPASFE 206


>gi|325696483|gb|EGD38373.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK160]
          Length = 196

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V  +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVGSLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  DFSKNQPCYLDQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPNHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +++  + D   +  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEQVSGVEDDA-ALTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|167586772|ref|ZP_02379160.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ubonensis Bu]
          Length = 210

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAVEIVNKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDDRQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPEHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +     +    N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LESLGQPLLGTTLILPPEEEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTADE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGPLE 203


>gi|315634118|ref|ZP_07889407.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter segnis ATCC
           33393]
 gi|315477368|gb|EFU68111.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter segnis ATCC
           33393]
          Length = 207

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 7/191 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            ++ V   +  L K   PG  T +L          L T+  KT   RVP       L++ 
Sbjct: 77  NYSLVTNSAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALDLLKA 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G P+   S     +  IT +    +   +  ++ LII GG   +G E +T+V++  E  
Sbjct: 136 LGEPILSCSLMLPNEEHITQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTTETP 193

Query: 189 VRILRPGGLEI 199
           V ILR G   +
Sbjct: 194 V-ILREGSGSV 203


>gi|226500320|ref|NP_001148954.1| ischemia/reperfusion inducible protein [Zea mays]
 gi|195623606|gb|ACG33633.1| ischemia/reperfusion inducible protein [Zea mays]
          Length = 275

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL   V D+S
Sbjct: 70  KDHVLKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVS 129

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + + A VD L   L     PGP+T+VL     + +       L +   RVP   F + +
Sbjct: 130 DISRFALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSI 189

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186
           +   G  LA+ SAN SGQ S   VK      +      + DGG+   G   STIV++   
Sbjct: 190 VRGTGSALALTSANLSGQPSSVCVKD--FEGLWPHCSYVFDGGVLPSGRAGSTIVDLITP 247

Query: 187 KKVRILRPGGLEIET 201
              +ILR G    ET
Sbjct: 248 GVYKILRDGSSRKET 262


>gi|182683970|ref|YP_001835717.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae CGSP14]
 gi|182629304|gb|ACB90252.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae CGSP14]
          Length = 209

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 11  MDKIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 70

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 71  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 129 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 184

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 185 KILRQGAIKREDILARL 201


>gi|125717979|ref|YP_001035112.1| hypothetical protein SSA_1154 [Streptococcus sanguinis SK36]
 gi|125497896|gb|ABN44562.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 196

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ I  + 
Sbjct: 1   MDKIEKTLVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +EI  + D   S  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEISGVEDDA-SLTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREYI 187


>gi|167570496|ref|ZP_02363370.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           C6786]
          Length = 209

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLVKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +   S      N    + + + K+  L+IDGG       ST++++  ++
Sbjct: 133 LEALGQPLLGTTLILSPDDEPLNDPEEIRTRLEKQADLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGPLE 203


>gi|296138965|ref|YP_003646208.1| Sua5/YciO/YrdC/YwlC family protein [Tsukamurella paurometabola DSM
           20162]
 gi|296027099|gb|ADG77869.1| Sua5/YciO/YrdC/YwlC family protein [Tsukamurella paurometabola DSM
           20162]
          Length = 216

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 5/192 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           L  G  + +PT+T+YG+  D+ +  A+  L   K R    P+   V     +    S V 
Sbjct: 24  LKGGHLVVMPTDTLYGIGCDAFDNRAVGDLLAAKHRGPDMPVGVLVGSWDTIDGLVSRVS 83

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
           P +  L   FWPG ++LV++   +   +   T    T   R+P       +     P+A+
Sbjct: 84  PAARELTHAFWPGAVSLVVEQAPSLAWNLGDT--RGTVMLRMPLHPVAIELLREVGPMAV 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN SG+     +       +   + + +DGG ++  + STIV++   +  R+LR G +
Sbjct: 142 SSANVSGKPPAATMTDA-RDQLGDSVEVYLDGGPAEHAVASTIVDLSGPQP-RVLREGAV 199

Query: 198 EIETLKRAISVE 209
               +   + V+
Sbjct: 200 TSARIAEVLGVD 211


>gi|327460376|gb|EGF06713.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1057]
          Length = 196

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +++ +  + 
Sbjct: 1   MDKIENTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNMASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPTYLKQLYQAFLPGPLTIIL--HANDRVPTWINSGMETVGFRIPNHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+      EI  + D   +  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQGEISGVEDDA-TLTGQDSTILDLSGEKAI 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|229520393|ref|ZP_04409818.1| hypothetical protein VIF_000914 [Vibrio cholerae TM 11079-80]
 gi|229342491|gb|EEO07484.1| hypothetical protein VIF_000914 [Vibrio cholerae TM 11079-80]
          Length = 206

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N   + R+ +I++    +       D+S
Sbjct: 14  TRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKYGMERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPNNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   + +I++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190

Query: 188 KVRILRPGG 196
           +V + R G 
Sbjct: 191 EVVVARVGA 199


>gi|163755495|ref|ZP_02162614.1| translation factor [Kordia algicida OT-1]
 gi|161324408|gb|EDP95738.1| translation factor [Kordia algicida OT-1]
          Length = 207

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 9/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   ++K  + L  G  +  PT+TVYGL  D  N  A+ R+  IK             +D
Sbjct: 13  NPKEIKKVVDILRDGGLVIYPTDTVYGLGCDITNTKALERIARIKGIKLEKANFSFICND 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           +S +  +   +D  +  + K   PGP T +L   +     P      KT   RVP     
Sbjct: 73  LSHISDYIRQIDTPTYKILKKALPGPYTFILPGNNNL---PKVFKKKKTVGIRVPDNNIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + +++  G+P+   S      I   T    ++       +  ++DGG     + STI+++
Sbjct: 130 RTIVQELGNPIVSTSIYDEDDIIEYTTDPELILEKWENLVDAVVDGGYGD-NVASTIIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
              +   ++R G  +I+ +
Sbjct: 189 SGYEP-EVIREGKGDIDII 206


>gi|22297687|ref|NP_680934.1| hypothetical protein tlr0143 [Thermosynechococcus elongatus BP-1]
 gi|22293864|dbj|BAC07696.1| tlr0143 [Thermosynechococcus elongatus BP-1]
          Length = 213

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 4/199 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +  E L  G  +  PT+TVY +  D  +  A++R+ ++K+     P+    S +S
Sbjct: 14  PRAIAQIVEALKEGAVMLYPTDTVYAIGCDMNHKGAVQRVRQLKQLSNDKPVTFLCSSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCGFT-KK 126
            + ++A V   +  L +   PGP T +L   +T  +  L      KT   RVP     + 
Sbjct: 74  NIAQYAYVSDSAYRLMRRLIPGPYTFLLP--ATKLVPRLVQNPKRKTTGIRVPDHVVSQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G+P+   SA      +       L  +  K + L+ID G       S+I+++  E
Sbjct: 132 LLTALGNPIISTSARLPDDETYYVNTADLFDAFDKRVDLMIDTGEPPTQQMSSILDLTVE 191

Query: 187 KKVRILRPGGLEIETLKRA 205
             + + +  G E    +  
Sbjct: 192 PPLLVRKGRGWEALPAEMV 210


>gi|269103770|ref|ZP_06156467.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163668|gb|EEZ42164.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 185

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +    L  G  I  PTE V+G+  D  +  A+ +L  +K+RP    LI   +D   
Sbjct: 2   DNFAQVVAALQQGEVIGYPTEAVFGVGCDPDSEQAVHKLLALKQRPIEKGLILIAADYDQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+   L   K  WPGP+T V+    +  +    T   +T   RV      +
Sbjct: 62  LLAYVDESQLTTNQLEQIKNSWPGPVTWVMPTKPS--VPKFLTGQFETIAVRVSDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G P+   SAN +GQ      + +  + +   +  I+ G +      S I + Q 
Sbjct: 120 QLCRQFGKPITSTSANLTGQEPGRTYQDV-EAQLGHYLAAILQGEVGGRDNPSEIRDAQT 178

Query: 186 EKKVR 190
            K  R
Sbjct: 179 GKVFR 183


>gi|78066874|ref|YP_369643.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. 383]
 gi|77967619|gb|ABB08999.1| Sua5/YciO/YrdC/YwlC [Burkholderia sp. 383]
          Length = 210

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD       K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    +   + K++ L+IDGG       ST++++  E+
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNEPEEIRERLEKQVDLVIDGGACPR-EPSTVIDLTGEE 191

Query: 188 KVRILRPGGLEIE 200
              ++R G   +E
Sbjct: 192 P-ELVRAGRGALE 203


>gi|332366921|gb|EGJ44662.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1059]
          Length = 196

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNPPSYLDQLYQAFLPGPLTIILQ--ANDQVPVWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDA-ALTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|307709437|ref|ZP_07645894.1| yrdC domain protein [Streptococcus mitis SK564]
 gi|307619751|gb|EFN98870.1| yrdC domain protein [Streptococcus mitis SK564]
          Length = 199

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 6/192 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  ++  +  + 
Sbjct: 1   MDRIKQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIDSLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P       +  
Sbjct: 61  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SGQ S    + IL       + L  D  ++  G +STI+++  +K V+
Sbjct: 119 VTGPLIGPSANISGQSSGVTFEQILKDFDQDVLGLEDDAFLT--GQDSTILDLSGDK-VK 175

Query: 191 ILRPGGLEIETL 202
           ILR G ++ E +
Sbjct: 176 ILRQGAIKREDI 187


>gi|296128917|ref|YP_003636167.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM
           20109]
 gi|296020732|gb|ADG73968.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM
           20109]
          Length = 236

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 9/209 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I  +TD      A+ +A   +  G  + +PT+TVYG+  D+ +  A++ L + K R   
Sbjct: 5   RIKDVTDPATWGPAVDEAVHAVGRGELVVLPTDTVYGIGADAFDARAVQALLDAKGRGRQ 64

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P    + D+  +   A+  P ++  LA+ FWPG LT++L    +  +         T  
Sbjct: 65  MPPPVLIPDVRTLDGLATDVPDAVRALAETFWPGGLTVILRAQPS--LAWDLGETHGTVA 122

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     PLA+ SANR+G+ + T         +   + + +DGG +  G+
Sbjct: 123 LRMPDHPAALALLRRTGPLAVSSANRTGRPAATTAA-EAHEQLGDAVAVYLDGGTAPGGV 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRA 205
            STIV+   +  +R++R G L++ TL   
Sbjct: 182 ASTIVDATGD-ALRVVRLGALDLATLATV 209


>gi|312172531|emb|CBX80787.1| Uncharacterized protein yciO [Erwinia amylovora ATCC BAA-2158]
          Length = 207

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L+ G  I  PT++ Y L     + +A+ R+  I++    +       D+S
Sbjct: 15  PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLS 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 75  ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +   I K + LII GG       +T++++  E 
Sbjct: 134 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGFLGQ-QPTTVIDLT-EN 191

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +++  +
Sbjct: 192 TPEVVREGVGDVQPFR 207


>gi|85712441|ref|ZP_01043490.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein
           [Idiomarina baltica OS145]
 gi|85693719|gb|EAQ31668.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein
           [Idiomarina baltica OS145]
          Length = 207

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 5/205 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            ++  +      +++A + +  G  +  PT++ Y +     +  A+ R+ +I+     + 
Sbjct: 5   FEVHPMNPQKRLIQQAVDIIRQGGIVVYPTDSGYAIGCQIGDKKAVDRICQIRDIDKEHN 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D+S +  +A VD  +  L K   PGP T +L          L     KT   RV
Sbjct: 65  FTLMCRDLSELSTYARVDNDAFRLLKNNTPGPYTFILKGTKEVP-KRLLNPKRKTIGIRV 123

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+E    PL   S          +    +   + K + LI+DGG  K    +
Sbjct: 124 PTNRIALALLEELNEPLMSTSLILGNNELAESDPETIREQLEKRVDLIVDGGH-KGEEPT 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           T+V++     V ++R G  + +  +
Sbjct: 183 TVVDLSEGAPV-VIRGGSGDTQPFE 206


>gi|254427759|ref|ZP_05041466.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
 gi|196193928|gb|EDX88887.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
          Length = 182

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + + AG  IA PTE+VYGL  D  N  A+ +L  IK+RP    LI     ++ +  + 
Sbjct: 8   AAQIIQAGGVIAYPTESVYGLGCDPFNQDAVMQLLAIKQRPVSKGLILIGETLAQLAPYL 67

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            ++       +  WP P+T +++  +   +        +    RVP     ++L    G 
Sbjct: 68  RLNDQQAARLQQQWPAPVTYLVE--ANEHLPAWVRGQHRKVAVRVPDHPLARQLCNLAGQ 125

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           P+   SAN SG+ +  N   +    +  ++  I+ G   +    STI++++  + +R 
Sbjct: 126 PIISTSANISGRPAACNRYQVAR-QLGDQLDFIVSGACDRASKPSTIIDLESGRILRP 182


>gi|54310611|ref|YP_131631.1| putative Sua5/YciO/YrdC family protein [Photobacterium profundum
           SS9]
 gi|46915054|emb|CAG21829.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum
           SS9]
          Length = 192

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 8/194 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I  + D + L++    L +G  IA PTE V+G+  D  NP A+ +L  +K+RP    L
Sbjct: 1   MVIYEV-DMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGL 59

Query: 61  ICHVSDISMVKKH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I   ++   ++ +   A +  L        WPGP+T V+ +    DI PL T    +   
Sbjct: 60  ILIAANYQQLQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPVKK--DISPLLTGKFTSIAV 117

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RV      +KL   +G P+   SAN +G      V  +  + + + +  I++G       
Sbjct: 118 RVSDHPLVQKLCHQFGKPITSTSANLTGLPPCKTVTEV-QNQLGEHLSAILEGETGGREN 176

Query: 177 ESTIVNVQCEKKVR 190
            + I +   +  +R
Sbjct: 177 PTEIRDAFSDTVLR 190


>gi|22125943|ref|NP_669366.1| hypothetical protein y2053 [Yersinia pestis KIM 10]
 gi|45441809|ref|NP_993348.1| hypothetical protein YP_2009 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596460|ref|YP_070651.1| hypothetical protein YPTB2134 [Yersinia pseudotuberculosis IP
           32953]
 gi|108807565|ref|YP_651481.1| hypothetical protein YPA_1570 [Yersinia pestis Antiqua]
 gi|108811841|ref|YP_647608.1| hypothetical protein YPN_1679 [Yersinia pestis Nepal516]
 gi|145598220|ref|YP_001162296.1| hypothetical protein YPDSF_0923 [Yersinia pestis Pestoides F]
 gi|149365869|ref|ZP_01887904.1| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125]
 gi|153949288|ref|YP_001400904.1| hypothetical protein YpsIP31758_1929 [Yersinia pseudotuberculosis
           IP 31758]
 gi|165927411|ref|ZP_02223243.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938161|ref|ZP_02226720.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010763|ref|ZP_02231661.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210525|ref|ZP_02236560.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167400845|ref|ZP_02306351.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420278|ref|ZP_02312031.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425046|ref|ZP_02316799.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470516|ref|ZP_02335220.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis FV-1]
 gi|170024275|ref|YP_001720780.1| hypothetical protein YPK_2040 [Yersinia pseudotuberculosis YPIII]
 gi|186895509|ref|YP_001872621.1| hypothetical protein YPTS_2203 [Yersinia pseudotuberculosis PB1/+]
 gi|218929308|ref|YP_002347183.1| hypothetical protein YPO2212 [Yersinia pestis CO92]
 gi|229894896|ref|ZP_04510074.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
 gi|229897639|ref|ZP_04512795.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229898284|ref|ZP_04513431.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229902143|ref|ZP_04517264.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
 gi|270490617|ref|ZP_06207691.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27]
 gi|294503750|ref|YP_003567812.1| hypothetical protein YPZ3_1640 [Yersinia pestis Z176003]
 gi|21958883|gb|AAM85617.1|AE013807_11 hypothetical protein y2053 [Yersinia pestis KIM 10]
 gi|45436671|gb|AAS62225.1| Putative translation factor (SUA5) [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51589742|emb|CAH21372.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108775489|gb|ABG18008.1| translation factor SUA5 [Yersinia pestis Nepal516]
 gi|108779478|gb|ABG13536.1| translation factor SUA5 [Yersinia pestis Antiqua]
 gi|115347919|emb|CAL20841.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209916|gb|ABP39323.1| translation factor SUA5 [Yersinia pestis Pestoides F]
 gi|149292282|gb|EDM42356.1| hypothetical protein YPE_1047 [Yersinia pestis CA88-4125]
 gi|152960783|gb|ABS48244.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis IP
           31758]
 gi|165913822|gb|EDR32440.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920677|gb|EDR37925.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990465|gb|EDR42766.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207705|gb|EDR52185.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961973|gb|EDR57994.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049698|gb|EDR61106.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056233|gb|EDR66011.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750809|gb|ACA68327.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186698535|gb|ACC89164.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681039|gb|EEO77134.1| predicted RNA-binding protein [Yersinia pestis Nepal516]
 gi|229688574|gb|EEO80643.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693976|gb|EEO84025.1| predicted RNA-binding protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701991|gb|EEO90012.1| predicted RNA-binding protein [Yersinia pestis Pestoides A]
 gi|262362130|gb|ACY58851.1| hypothetical protein YPD4_1944 [Yersinia pestis D106004]
 gi|262365459|gb|ACY62016.1| hypothetical protein YPD8_1331 [Yersinia pestis D182038]
 gi|270339121|gb|EFA49898.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27]
 gi|294354209|gb|ADE64550.1| hypothetical protein YPZ3_1640 [Yersinia pestis Z176003]
 gi|320014877|gb|ADV98448.1| putative RNA-binding protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 206

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S
Sbjct: 14  PRLINQCVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G     +    +  ++ K++ LII GG S     +T++++  + 
Sbjct: 133 LDALGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190

Query: 188 KVRILRPGGLEI 199
              ++R G  ++
Sbjct: 191 APEVIREGAGDV 202


>gi|86147036|ref|ZP_01065353.1| Putative translation factor [Vibrio sp. MED222]
 gi|218709945|ref|YP_002417566.1| translation factor [Vibrio splendidus LGP32]
 gi|85835101|gb|EAQ53242.1| Putative translation factor [Vibrio sp. MED222]
 gi|218322964|emb|CAV19141.1| hypothetical translation factor [Vibrio splendidus LGP32]
          Length = 206

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLITQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD ++  L K   PG  T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNVAFRLLKAHTPGAYTFIFKATKEVP-KRLMNAKRKTIGIRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G  +  +    +  S+   + +I++GG       +T+++   + 
Sbjct: 133 LEAMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGYLGE-QPTTVIDFSDDD 191

Query: 188 KVRILRPGG 196
            V + R  G
Sbjct: 192 AVVLRRGAG 200


>gi|313203740|ref|YP_004042397.1| translation factor sua5 [Paludibacter propionicigenes WB4]
 gi|312443056|gb|ADQ79412.1| translation factor SUA5 [Paludibacter propionicigenes WB4]
          Length = 201

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 16/207 (7%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RP 55
           ++ I D+N     +R+  E L  G  I  PT+ VY    +  N + +  + ++K+   R 
Sbjct: 2   LIKIYDTNPNPIEIRRVVEVLRKGGIIIFPTDGVYAFGCNIFNASGVEFIAKLKEHDMRK 61

Query: 56  AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           A    ICH  ++S + ++A +D +S  L K   PGP T +L+  S     P    N KT 
Sbjct: 62  ANLSFICH--EMSQISEYAKMDDVSFKLMKRNLPGPFTFILNGSSKL---PKLFKNKKTV 116

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISK 173
             R+P      +++   G+PL   S     + +       ++      ++ ++IDGG+  
Sbjct: 117 GIRMPQNNIALEIVRELGNPLMTSSIFTDEKTTEYITDPELIEEKYGHQVDMVIDGGMGG 176

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200
           + + STIV+   ++ V I+R G  E++
Sbjct: 177 L-IHSTIVDCTEDEPV-IIRQGAGELQ 201


>gi|315222984|ref|ZP_07864863.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus F0211]
 gi|315187934|gb|EFU21670.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus anginosus F0211]
          Length = 196

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L +G  + +PTETVYGL   + +  A+  +Y++K RP    L  +VS +  + 
Sbjct: 1   MDKIEEMLSSGGAVVLPTETVYGLFCKALDEQAVSHVYDLKGRPREKALNLNVSSLEEIY 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
           + +   P  L  L + F PGPLT++L   +   +     + +KT  FRVP    T  LI 
Sbjct: 61  QFSKHQPQYLKKLYQAFLPGPLTIILQ--ANEQVPVWVNSGMKTIGFRVPSHPKTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G PL  PSAN SG+ S  N + I++    + + +  D  ++  G +STI+++  E   
Sbjct: 119 KFG-PLIGPSANLSGKSSGVNFQQIMTDFNYEVLGIEDDAFLT--GQDSTILDLSGE-TA 174

Query: 190 RILRPGGLEIETLKRAI 206
            ILR G +  E +   I
Sbjct: 175 YILRQGAVTCEEILAKI 191


>gi|266619533|ref|ZP_06112468.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM
           13479]
 gi|288868944|gb|EFD01243.1| Sua5/YciO/YrdC/YwlC family protein [Clostridium hathewayi DSM
           13479]
          Length = 216

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 25/200 (12%)

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204
           + S T   H+    +  +I +I+DGG   IG+ESTI++V  +  V ILRPG +  E    
Sbjct: 1   RPSPTTADHVW-QDMNGKIDMIVDGGPVGIGVESTIIDVSGQVPV-ILRPGAVTQEMAGA 58

Query: 205 AISVEL--------EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV------------N 244
            + +E+        +  +     P++PGM   HYAP++ + L                  
Sbjct: 59  VLGMEIGLDPAITGDGPMKADVKPKAPGMKYKHYAPKADLTLVEGEPAEVARTINHLAKE 118

Query: 245 PREALIRFGNV---PIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
             +A  R G +     + +    +  +L    + +  A NL+  ++  DD  A  I   S
Sbjct: 119 KLQAGYRVGIICTDETRELYPEGMVRSLGLRAREETIAHNLYAVLREFDDLEADYIYSES 178

Query: 302 IPNHGLGIAINNRLERAAAP 321
                LG AI NRL++AA  
Sbjct: 179 FSADHLGQAIMNRLKKAAGY 198


>gi|295095682|emb|CBK84772.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 206

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  ++ R+  I++ P  +       D+S
Sbjct: 14  PRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGSMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYAYVDNVAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +ET G P+   S    G     +    +   + K + LII GG       +T+V++  + 
Sbjct: 133 LETLGEPMLSTSLMLPGSEFTESDPEEIKDRLEKVVELIIHGGYLGQ-QPTTVVDLTEDA 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-EVIREG 198


>gi|147674311|ref|YP_001216749.1| hypothetical protein VC0395_A0799 [Vibrio cholerae O395]
 gi|146316194|gb|ABQ20733.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227013095|gb|ACP09305.1| conserved hypothetical protein [Vibrio cholerae O395]
          Length = 206

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N   + R+ +I++    +       D+S
Sbjct: 14  TRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPNNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   + +I++GG       +T+++   + 
Sbjct: 133 LEVLGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190

Query: 188 KVRILRPGG 196
           +V + R G 
Sbjct: 191 EVVVARVGA 199


>gi|324994442|gb|EGC26355.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK678]
          Length = 196

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ I  + 
Sbjct: 1   MDKIEKTLVAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASIEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLKQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D      G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDAY-LTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|149374416|ref|ZP_01892190.1| hypothetical protein MDG893_10226 [Marinobacter algicola DG893]
 gi|149361119|gb|EDM49569.1| hypothetical protein MDG893_10226 [Marinobacter algicola DG893]
          Length = 207

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 5/205 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     + +A + L  G  I  PT++ Y +     +  A  R+  I++    + 
Sbjct: 5   FQIHPETPQKRLINQAVDILRKGGVIVYPTDSAYAIGCHLGDKQAADRIKRIRRLDDKHN 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D+S +   A VD     L K F PG  T +LD  S      L     KT   RV
Sbjct: 65  FTLMCRDLSDIGVFAKVDNTQYRLLKNFTPGAYTFILDATSEVP-RRLLHPKRKTIGMRV 123

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + L+   G P+   +    G        + +  ++  E+ LIIDGG   +   +
Sbjct: 124 PDNAIVQALLAELGEPIMSSTLILPGDEDPMTDPYDIRETLEHELDLIIDGGFCGL-EAT 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           T+VN+  +    + R G  + E  +
Sbjct: 183 TVVNMTGDAP-EVTRVGKGDPEPFR 206


>gi|170724414|ref|YP_001758440.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908]
 gi|212288229|sp|B1KCX0|RIMN_SHEWM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|169809761|gb|ACA84345.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908]
          Length = 185

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 7/186 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A  +  + +++G  +A PTE VYGL  D  N  AI +L  IKKRP    LI   SD  
Sbjct: 3   EQAPAEVKQVIESGGVVAYPTEAVYGLGCDPDNDAAITKLLAIKKRPWEKGLILVASDYQ 62

Query: 69  MVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
            +  +     L+    +     WPGP T ++ +     I  L   +  +   RV    T 
Sbjct: 63  QLLPYIDDSQLTEEQRERVFSKWPGPFTFIMPIKPG--ISNLLCGSFNSLAVRVSDHPTI 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + + +  G PL   SAN SG+    + + IL +    EI  ++ G + +    STI++  
Sbjct: 121 QAICQQLGKPLVSTSANHSGEEPAMSHEEIL-AKFEGEIDALVAGSLGEQRKPSTIIDAI 179

Query: 185 CEKKVR 190
             K +R
Sbjct: 180 SGKILR 185


>gi|218779903|ref|YP_002431221.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761287|gb|ACL03753.1| Sua5/YciO/YrdC/YwlC family protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 214

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 6/201 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+ +A   L  G  +  PT  +YGLA  + +P A+  ++ IK RP   PL+  V  I  
Sbjct: 15  EAINQAVRILKEGGVVVFPTTGLYGLAAKASDPQAVAEVFRIKGRPDDKPLLILVDSIDQ 74

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           VK      P S   L +  WPG +TLV    ++  + P      K    R+      + L
Sbjct: 75  VKPLVREVPESGRLLMEKLWPGGITLVF--CASDLLPPSLLGGKKKIGIRMAAHPVARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   SAN SG+    + + +  + + +  PL +D G    G  ST+V+V  + 
Sbjct: 133 VKGLGEPITGTSANLSGEPGAGDFRQLSLAVL-ERTPLALDAGKLAGGAGSTVVDVTEDP 191

Query: 188 KVRILRPGGLEIETLKRAISV 208
            + ILR G    E +  A+  
Sbjct: 192 PL-ILRQGAAPKEKIFNALKT 211


>gi|163803308|ref|ZP_02197186.1| Sua5/YciO/YrdC family protein [Vibrio sp. AND4]
 gi|159172878|gb|EDP57717.1| Sua5/YciO/YrdC family protein [Vibrio sp. AND4]
          Length = 185

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 7/182 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            K  E L  G  IA PTE V+G+  D  NP AI++L  +K+RP    LI   +    +  
Sbjct: 5   EKVLEALQNGEVIAYPTEGVFGVGCDPDNPAAIQKLLALKQRPVEKGLILIAASYEQLMP 64

Query: 73  HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +     L+          WPGP T V+   ++  +    +    +   RV      +K+ 
Sbjct: 65  YIDESQLTQEQLDKVHATWPGPFTWVMP--ASDKVSHWVSGQFDSIAVRVTDHPLVQKMC 122

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +G PL   SAN +GQ      + +    +  ++  ++ G  S     S I + +  + 
Sbjct: 123 HAFGKPLTSTSANLTGQPPCMTTEEV-EQQLGDQLVAVLRGETSGRDKPSEIRDAKTSQI 181

Query: 189 VR 190
           +R
Sbjct: 182 LR 183


>gi|116511390|ref|YP_808606.1| translation factor SUA5 [Lactococcus lactis subsp. cremoris SK11]
 gi|116107044|gb|ABJ72184.1| translation factor SUA5 [Lactococcus lactis subsp. cremoris SK11]
          Length = 306

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A + L  G  + +PTETVYGL  D+ N  A+++LY +K RP    L  +VS    + K
Sbjct: 110 ARAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILK 169

Query: 73  HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           ++   P  L  +   F PGPLT++L+  +++++         T  FR+P    T+K+I+ 
Sbjct: 170 YSINPPDYLGKIVDAFLPGPLTIILE--ASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKE 227

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  L  PSAN +G  S +    +    +      + D  I   GL++TI+++  EK  +
Sbjct: 228 VGV-LVGPSANLTGSKSPSFFADLSQEILENAAVAVQDDNI--YGLDTTIIDLTQEKP-K 283

Query: 191 ILRPGGLEIETLKRAI 206
           +LR G +    L + +
Sbjct: 284 LLRQGAVTKAELLKKV 299


>gi|292488388|ref|YP_003531270.1| hypothetical protein EAMY_1912 [Erwinia amylovora CFBP1430]
 gi|291553817|emb|CBA20862.1| Uncharacterized protein yciO [Erwinia amylovora CFBP1430]
          Length = 207

 Score =  172 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L+ G  I  PT++ Y L     + +A+ R++ I++    +       D+S
Sbjct: 15  PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERIWRIRQLDGNHNFTLMCRDLS 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 75  ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +   I K + LII GG       +T++++  E 
Sbjct: 134 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGFLGQ-QPTTVIDLT-EN 191

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +++  +
Sbjct: 192 TPEVVREGVGDVQPFR 207


>gi|161503166|ref|YP_001570278.1| hypothetical protein SARI_01234 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864513|gb|ABX21136.1| hypothetical protein SARI_01234 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 206

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVDIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKELP-RRLLQEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++T   P+   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LDTLSEPMLSTSLMLPGSDFTESDPEEIKERLEKQVDLIIHGGYLGQ-QPTTVIDLTDDS 191

Query: 188 KVRILRPG 195
            V +LR G
Sbjct: 192 PV-VLRVG 198


>gi|292899585|ref|YP_003538954.1| hypothetical protein EAM_1875 [Erwinia amylovora ATCC 49946]
 gi|291199433|emb|CBJ46550.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
          Length = 206

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L+ G  I  PT++ Y L     + +A+ R++ I++    +       D+S
Sbjct: 14  PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERIWRIRQLDGNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 74  ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +   I K + LII GG       +T++++  E 
Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGFLGQ-QPTTVIDLT-EN 190

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +++  +
Sbjct: 191 TPEVVREGVGDVQPFR 206


>gi|167624539|ref|YP_001674833.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354561|gb|ABZ77174.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 206

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   + +G  I  PT++ Y L     +  A+ ++  I++    +       D S
Sbjct: 14  TRLISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQIDNDHNFSLMCRDQS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELATYARVDNQAYRLLKQNTPGPYTFIFMASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    GQ    +    +   +  ++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPLMSTSLILPGQEFTESDPEHIRDILEHQVDLIIHGGYLGE-KPTTVIDL-SDG 190

Query: 188 KVRILRPGGLEI 199
           ++ ++R G  ++
Sbjct: 191 EIEVIREGAGDV 202


>gi|157373182|ref|YP_001471782.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3]
 gi|212288227|sp|A8FP81|RIMN_SHESH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|157315556|gb|ABV34654.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3]
          Length = 185

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 7/186 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A  +  E ++ G  +A PTE VYGL  D  N  AI RL  +KKRP    LI   SD  
Sbjct: 3   EQAPDEVQEIIEQGGVVAYPTEAVYGLGCDPDNDEAITRLLALKKRPWQKGLILVASDYQ 62

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
            +  +     L+   L K+F  WPGP T ++ +     +  L   +  +   RV    T 
Sbjct: 63  QLLPYIDESRLTNEQLNKVFVKWPGPFTFIMPIKPG--LSNLLCGSFNSLAVRVSSHPTI 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + + +  G PL   SAN +G+    + + I+ +    EI  +I G +      STIV+  
Sbjct: 121 QAICQRLGKPLVSTSANHAGEPPAMSCEEII-AKFDGEIDALISGSLGAERKPSTIVDAI 179

Query: 185 CEKKVR 190
             K +R
Sbjct: 180 SGKVLR 185


>gi|326335637|ref|ZP_08201824.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692403|gb|EGD34355.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 207

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   ++K  + L  G  I  PT+TVYGL  D  +  A+ R+ ++K             +D
Sbjct: 13  NEREVQKVVDCLREGGVIIYPTDTVYGLGCDITHSKALERIAQLKGIKLEKANFSFVCAD 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           +S +  +   +D  +  + K   PG  T +L   +     P      KT   RVP     
Sbjct: 73  LSNLSDYVKQIDTATFKILKRALPGAYTFILPGNTNL---PKEFKKKKTVGIRVPDNNIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + L++  G+P+   S     + I  T    ++      ++ ++IDGG     + ST++++
Sbjct: 130 RILVKKLGNPIVSSSIYDEDEVIEYTTDPELIFEKWQDKVDMVIDGGYGD-NVASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
              +   ++R G   IE L
Sbjct: 189 ST-RVPELIREGKGSIEGL 206


>gi|260775021|ref|ZP_05883921.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260609111|gb|EEX35270.1| YrdC family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 185

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +A   L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2   DNFEQALLALKNGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+    +     WPGP+T ++    +  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLTDEQLQKVHQTWPGPVTWIMPC--SDKVSDWVSGQFDSIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+    G PL   SAN +G+        +    +   +  I+ G        S I + + 
Sbjct: 120 KMCNALGKPLTSTSANLTGEPPCMTTAEV-EQQLGDRLVAILAGDTGGRDKPSEIRDAKT 178

Query: 186 EKKVR 190
            K +R
Sbjct: 179 SKVLR 183


>gi|268325206|emb|CBH38794.1| conserved hypothetical protein, containing yrdC domain [uncultured
           archaeon]
          Length = 216

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 9/192 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + +R A   +  G  I  PTETVYGL  D+ + TA+R +Y+IK+R    P+   VS   
Sbjct: 6   ESQIRAAIAIIKRGGTIVYPTETVYGLGADALSETAVREVYKIKRRDVTQPISVAVSSFE 65

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           M+ K A +DP    +     PGP+T++L       +  L TA       R P       I
Sbjct: 66  MLHKVAYIDPGISEIISALLPGPVTVLLKKKEI--VPALLTAESDVLGVRFPDNEIATRI 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK- 187
                P+   SAN SG+   T V+ +    +   + +II G   K  + ST+V++     
Sbjct: 124 IEETGPITATSANVSGRTPPTCVEEVEIEFL---VDIIIHGTKCKYSMPSTVVDMTTANE 180

Query: 188 ---KVRILRPGG 196
              K++I R G 
Sbjct: 181 GKAKIKIKRRGA 192


>gi|322385291|ref|ZP_08058936.1| Sua5/YciO/YrdC family protein [Streptococcus cristatus ATCC 51100]
 gi|321270550|gb|EFX53465.1| Sua5/YciO/YrdC family protein [Streptococcus cristatus ATCC 51100]
          Length = 196

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIENTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEDIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  + + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLEQVYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  EK  
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDD-TALTGQDSTILDLSGEK-A 174

Query: 190 RILRPGGLEIETL 202
           RILR G +  E +
Sbjct: 175 RILRQGAITREDI 187


>gi|281491066|ref|YP_003353046.1| Sua5/YciO/YrdC/YwlC family RNA-binding protein [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374824|gb|ADA64344.1| RNA-binding protein, Sua5/YciO/YrdC/YwlC family [Lactococcus lactis
           subsp. lactis KF147]
 gi|326406101|gb|ADZ63172.1| Sua5/YciO/YrdC/YwlC family RNA-binding protein [Lactococcus lactis
           subsp. lactis CV56]
          Length = 306

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A + L +G    +PTETVYGL  D+ N  A+++LY +K RP    L  ++S    + K
Sbjct: 110 ARAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTEKALNMNISSFEDILK 169

Query: 73  HASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           ++   P+ L    + F PGPLT++L+  ++ D+         T  FR+P    T+K+I+ 
Sbjct: 170 YSINQPVYLQKIVEAFLPGPLTIILE--ASKDVPEWIHIGKSTVGFRMPNIAVTQKIIKE 227

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  L  PSAN SG  S +    +    +      + D   S  GL++TI+++  EK  +
Sbjct: 228 VGV-LVGPSANLSGSKSPSFFADLSPEILENAAVAVQDD--SIYGLDTTIIDLTQEKP-K 283

Query: 191 ILRPGGLEIETLKRAI 206
           +LR G +  E L + +
Sbjct: 284 LLRQGAVTKEELLKKV 299


>gi|229525789|ref|ZP_04415194.1| hypothetical protein VCA_003425 [Vibrio cholerae bv. albensis
           VL426]
 gi|229339370|gb|EEO04387.1| hypothetical protein VCA_003425 [Vibrio cholerae bv. albensis
           VL426]
          Length = 206

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N   + R+ +I++    +       D+S
Sbjct: 14  TRLINQAVAIIRNGGVVVYPTDSGYALGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  EIALYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPNNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +   +   + +I++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEEIRDRLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190

Query: 188 KVRILRPGG 196
           +V + R G 
Sbjct: 191 EVVVARVGA 199


>gi|162457645|ref|YP_001620012.1| putative translation factor [Sorangium cellulosum 'So ce 56']
 gi|161168227|emb|CAN99532.1| Putative translation factor [Sorangium cellulosum 'So ce 56']
          Length = 201

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 7/196 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   + +A + +  G  I  PT+TVYG   D  N  AI R+Y+IK       L     D+
Sbjct: 11  EPRKIARAIDLIQKGEVIGYPTDTVYGFGCDLMNKAAIERVYQIKGMRQNKNLAFICPDL 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           S + ++A V+  +  + K + PGP T +L   +T ++        KT   RVP       
Sbjct: 71  SDIARYAIVENQTYRILKRYLPGPYTFILP--ATREVPKYVHLKQKTVGIRVPNHPVALA 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PL   +A   G+  I +   I        + L++D G +   + +T++++  +
Sbjct: 129 LVRALGRPLISTTAAPPGEDPIIDPGEI--DDRFPGLALVLDAG-TGGSVPTTVIDL-SQ 184

Query: 187 KKVRILRPGGLEIETL 202
            +V+I+R G   I+ L
Sbjct: 185 GEVQIVREGAGPIDDL 200


>gi|255007792|ref|ZP_05279918.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis
           3_1_12]
 gi|313145497|ref|ZP_07807690.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134264|gb|EFR51624.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 204

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 9/201 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNIFKLMKRNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNH 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        I       ++      ++ L+IDGGI  I   STI
Sbjct: 125 IIREIARLLDAPIMTTTLPHDEHEDIEYITDPELIDEKFGDQVDLVIDGGIGGI-EPSTI 183

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           VN   + +V I+R G  E+E 
Sbjct: 184 VNCT-DGEVTIVRQGKGELEE 203


>gi|223946371|gb|ACN27269.1| unknown [Zea mays]
          Length = 275

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL   V D+S
Sbjct: 70  KDHVLKATDAINRGEVIAVPTDTIYGFACDACSAGAVNRIYEIKGRIQTRPLAICVGDVS 129

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + + A VD L   L     PGP+T+VL     + +       L +   RVP   F + +
Sbjct: 130 DISRFALVDHLPHGLLDSLLPGPVTIVLKRGENSILERSLNPGLDSIGVRVPDLDFIRSI 189

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186
               G  LA+ SAN SGQ S   VK      +      + DGG+   G   STIV++   
Sbjct: 190 ARGTGSALALTSANLSGQPSSVCVKD--FEGLWPHCSYVFDGGVLPSGRAGSTIVDLITP 247

Query: 187 KKVRILRPGGLEIET 201
              +ILR G    ET
Sbjct: 248 GVYKILRDGSSRKET 262


>gi|148981774|ref|ZP_01816522.1| putative translation factor [Vibrionales bacterium SWAT-3]
 gi|145960741|gb|EDK26080.1| putative translation factor [Vibrionales bacterium SWAT-3]
          Length = 206

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIVRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD ++  L K   PG  T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNVAFRLLKAHTPGAYTFIFKATKEVP-KRLMNAKRKTIGIRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G  +  +    +  S+   + +I++GG       +T+++   + 
Sbjct: 133 LEAMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGYLGE-QPTTVIDFSDDD 191

Query: 188 KVRILRPGG 196
            V + R  G
Sbjct: 192 AVILRRGAG 200


>gi|119773191|ref|YP_925931.1| SUA5/YciO/YrdC-like protein [Shewanella amazonensis SB2B]
 gi|119765691|gb|ABL98261.1| translation factor SUA5 [Shewanella amazonensis SB2B]
          Length = 190

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +    +++G  +A PTE VYGL  D  N TAI++L  +K+RP    LI   S    +K +
Sbjct: 11  QISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPY 70

Query: 74  ASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
             +  ++   L   F  WPGP T V+   +  D+ P+      T   RV      + +  
Sbjct: 71  IDLSRVTEAQLQAAFDKWPGPFTFVIP--AKADVSPMLRGCFDTIAVRVSAHQDVRAMCY 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   SAN +G+     +  +  + +  +I  ++ G + +    STI+++Q     
Sbjct: 129 ACQKPLVSTSANLAGEQPALTLAEV-QTQLGDKIDAVVLGALGQSCQPSTIIDIQTGHIF 187

Query: 190 R 190
           R
Sbjct: 188 R 188


>gi|183603846|ref|ZP_02722143.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           MLV-016]
 gi|225856677|ref|YP_002738188.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae P1031]
 gi|183577918|gb|EDT98446.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           MLV-016]
 gi|225724879|gb|ACO20731.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae P1031]
 gi|301799988|emb|CBW32578.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
 gi|332200607|gb|EGJ14679.1| yrdC domain protein [Streptococcus pneumoniae GA41317]
          Length = 200

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 2   MDRIRQELENGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|23200231|pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1
          Length = 206

 Score =  172 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A  R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYSFVDNVAFRLXKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGXRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P    S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 191

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 192 PV-VVREG 198


>gi|269102963|ref|ZP_06155660.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162861|gb|EEZ41357.1| YrdC family protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 221

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E +  G  I  PT++ Y L     N +A+ R+ +I++    +       D+S
Sbjct: 28  TRLINQAVEIIRNGGVIVYPTDSGYALGCQLENKSALERICQIRRLNDKHNFTLLCRDLS 87

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L +   PG  T +           L     KT   RVP       L
Sbjct: 88  EISLYARVDNAAFRLLRNNTPGAYTFIFKGTKDVP-RRLMNPKRKTIGIRVPDNQIALDL 146

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   S          +    +   +   + LII GG       +T+++   + 
Sbjct: 147 LAALGEPMMSTSLILPNHEMTESDPDEIRDKLEHAVDLIIHGGYLGE-QPTTVIDFSNDD 205

Query: 188 KVRILRPGGLEIETLK 203
            + I+R G  +    +
Sbjct: 206 -IEIVRVGAGDPAPFE 220


>gi|255746765|ref|ZP_05420711.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262166889|ref|ZP_06034610.1| YrdC family protein [Vibrio cholerae RC27]
 gi|255735522|gb|EET90921.1| YrdC family protein [Vibrio cholera CIRS 101]
 gi|262024660|gb|EEY43340.1| YrdC family protein [Vibrio cholerae RC27]
          Length = 185

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 2   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 61

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 62  LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 120 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 178

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 179 ---LQVLRQG 185


>gi|300723350|ref|YP_003712653.1| protein yciO [Xenorhabdus nematophila ATCC 19061]
 gi|297629870|emb|CBJ90488.1| Protein yciO [Xenorhabdus nematophila ATCC 19061]
          Length = 206

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 6/189 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + ++ E L  G  +  PT++ Y +     N  A+ R+  I++    +       D+S
Sbjct: 14  ARLIEQSAEVLKKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLEGRHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP      +L
Sbjct: 74  EISTYAHVDNQAFRLIKNNTPGNYTFILQATKEVP-RRLMNEKRKTIGLRVPSNPIALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES-TIVNVQCE 186
           +E  G PL   S    G     +    +  ++ K++ LII GG   +G +S T+V++  +
Sbjct: 133 LEKMGEPLMSCSLILPGNDFAESDPEEIKETLGKQVDLIIHGGY--LGQQSTTVVDLTGD 190

Query: 187 KKVRILRPG 195
             V ILR G
Sbjct: 191 SPV-ILREG 198


>gi|183599267|ref|ZP_02960760.1| hypothetical protein PROSTU_02728 [Providencia stuartii ATCC 25827]
 gi|188021499|gb|EDU59539.1| hypothetical protein PROSTU_02728 [Providencia stuartii ATCC 25827]
          Length = 206

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + ++ E L+ G  I  PT++ Y +        A++R+  I++  A +       D+S
Sbjct: 14  ARLINQSVEILNKGGVIVYPTDSGYAIGCRLEEKEALQRICRIRQLDANHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSNYAHVDNTAFRLIKNNTPGNYTFILRGTKEVP-RRLMNEKRKTIGLRVPSNPIARDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           +E  G PL   S    G     +    +   + K++ L+I GG   IG   +T+++   +
Sbjct: 133 LEAVGEPLMSTSLIMPGDDFTQSDPEEIRDLLGKQVDLVIHGGY--IGQKPTTVIDFTDD 190

Query: 187 KKVRILRPGGLEIETLK 203
             V ++R G  +    +
Sbjct: 191 SPV-VVRVGTGDPSPFE 206


>gi|153826414|ref|ZP_01979081.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-2]
 gi|149739800|gb|EDM53995.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-2]
          Length = 188

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA++RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMQRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|302344113|ref|YP_003808642.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
 gi|301640726|gb|ADK86048.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
          Length = 203

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
                + +    L  G  +A PT+T YGL  D  +  A+RRL++IK +P   P      D
Sbjct: 10  IQPRKIAQVTAALREGGVVAYPTDTSYGLGCDIFSQKALRRLHQIKAQPESKPFSFICPD 69

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +  +A+V   +    +   PGP T VL+   +     +     KT   RVP      
Sbjct: 70  LKDLSTYANVTNYAYKTLRRLLPGPYTFVLE--GSRHAPKMVLTKRKTVGIRVPDHPVCL 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            +++  GHP+A  +A   GQ    N    + S +   + L++DGG +  GL S+++ +  
Sbjct: 128 AIVQELGHPIASTTA-MDGQGRALNTPWEIESELGHALDLVVDGGPAP-GLLSSVIGLIG 185

Query: 186 EKKVRILRPGGLEIETLK 203
           ++  +I+R G  ++E  +
Sbjct: 186 DEP-QIIREGAGDVEEFR 202


>gi|148984976|ref|ZP_01818219.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922674|gb|EDK73791.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP3-BS71]
          Length = 199

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 1   MDRIRQELENGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 61  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 174

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 175 KILRQGAIKREDILARL 191


>gi|169833958|ref|YP_001694466.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183603195|ref|ZP_02713042.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP195]
 gi|183603653|ref|ZP_02718594.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|221231775|ref|YP_002510927.1| hypothetical protein SPN23F_09450 [Streptococcus pneumoniae ATCC
           700669]
 gi|225854523|ref|YP_002736035.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae JJA]
 gi|225861005|ref|YP_002742514.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230458|ref|ZP_06964139.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255328|ref|ZP_06978914.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502958|ref|YP_003724898.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|307067801|ref|YP_003876767.1| putative translation factor [Streptococcus pneumoniae AP200]
 gi|168996460|gb|ACA37072.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183572442|gb|EDT92970.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae SP195]
 gi|183575597|gb|EDT96125.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC3059-06]
 gi|220674235|emb|CAR68770.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225722954|gb|ACO18807.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae JJA]
 gi|225728267|gb|ACO24118.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238553|gb|ADI69684.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794158|emb|CBW36568.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
 gi|306409338|gb|ADM84765.1| Putative translation factor (SUA5) [Streptococcus pneumoniae AP200]
 gi|327389394|gb|EGE87739.1| yrdC domain protein [Streptococcus pneumoniae GA04375]
 gi|332073354|gb|EGI83833.1| yrdC domain protein [Streptococcus pneumoniae GA17570]
 gi|332075370|gb|EGI85839.1| yrdC domain protein [Streptococcus pneumoniae GA41301]
 gi|332201493|gb|EGJ15563.1| yrdC domain protein [Streptococcus pneumoniae GA47368]
 gi|332202884|gb|EGJ16952.1| yrdC domain protein [Streptococcus pneumoniae GA47901]
          Length = 200

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 2   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|107028721|ref|YP_625816.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054]
 gi|116690120|ref|YP_835743.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia
           HI2424]
 gi|170733453|ref|YP_001765400.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3]
 gi|206560533|ref|YP_002231298.1| hypothetical protein BCAL2171 [Burkholderia cenocepacia J2315]
 gi|105897885|gb|ABF80843.1| Sua5/YciO/YrdC/YwlC [Burkholderia cenocepacia AU 1054]
 gi|116648209|gb|ABK08850.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia
           HI2424]
 gi|169816695|gb|ACA91278.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia cenocepacia MC0-3]
 gi|198036575|emb|CAR52472.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 210

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD       K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  + 
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGGACPR-EPSTVIDLTGDA 191

Query: 188 KVRILRPGGLEIE 200
              ++R G   +E
Sbjct: 192 P-ELIRAGRGALE 203


>gi|183600716|ref|ZP_02962209.1| hypothetical protein PROSTU_04312 [Providencia stuartii ATCC 25827]
 gi|188019696|gb|EDU57736.1| hypothetical protein PROSTU_04312 [Providencia stuartii ATCC 25827]
          Length = 189

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 77/191 (40%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M    + A+      L+ G  IA PTE V+GL  D  +  A+ +L E+K+RP    LI  
Sbjct: 1   MQNKATPAIENIIISLNKGEVIAYPTEAVFGLGCDPDSEQAVNKLLELKQRPWEKGLILI 60

Query: 64  VSDISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +   +K +                 WPGP+T V+   S+T      T    T   RV 
Sbjct: 61  ADNYEQLKDYVDDSQLTDEQKQTMFASWPGPVTWVIPAKSST--PKWLTGRFDTLAVRVT 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K+L   YG PL   SAN SGQ        +L       IP ++DG +      S 
Sbjct: 119 DHGLVKELCREYGKPLVSTSANLSGQEPCRTTNEVL-EQFKGSIP-VLDGMVGGRQNPSE 176

Query: 180 IVNVQCEKKVR 190
           I + +  +  R
Sbjct: 177 IRDAKTGQLYR 187


>gi|253751630|ref|YP_003024771.1| hypothetical protein SSUSC84_0755 [Streptococcus suis SC84]
 gi|253753532|ref|YP_003026673.1| hypothetical protein SSU0792 [Streptococcus suis P1/7]
 gi|253755643|ref|YP_003028783.1| hypothetical protein SSUBM407_1043 [Streptococcus suis BM407]
 gi|251815919|emb|CAZ51533.1| conserved hypothetical protein [Streptococcus suis SC84]
 gi|251818107|emb|CAZ55901.1| conserved hypothetical protein [Streptococcus suis BM407]
 gi|251819778|emb|CAR45685.1| conserved hypothetical protein [Streptococcus suis P1/7]
          Length = 200

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L+ G  + +PTETVYGL   + N  A+ R+Y++K+RP    +  +VS+++ + 
Sbjct: 1   MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L   F PGPLT++L   +  ++     + L T  FR+P    T +LI 
Sbjct: 61  FFSQNTPFFLEKLYNRFMPGPLTIIL--KANDNVPFWVNSGLDTVGFRLPNHEQTLRLIS 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG  S       + +    ++P I D   +  G++STI+++   +K 
Sbjct: 119 ETG-PLIGPSANISGNESGKKFSD-IQAQFSVDLPGIEDD-QALTGIDSTILDLSG-QKA 174

Query: 190 RILRPGGLEIETLKRAISVELEYCV 214
           RILR G +  E +++AI  E+E+ V
Sbjct: 175 RILRQGAISREEIQKAI-PEIEFEV 198


>gi|209522310|ref|ZP_03270935.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. H160]
 gi|209497255|gb|EDZ97485.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia sp. H160]
          Length = 211

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + ++ G  +A+PT++ Y LA    +  A+ RL  ++       L   V D+S
Sbjct: 14  PRLVKQAAQIINDGGVVALPTDSTYALACRLDDKDAVERLRRVRGLDDKQLLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   VL          +S  + KT   RVP    T  +
Sbjct: 74  ELANFAMVDNWQYRLLKSVTPGPYVFVLQATKEVP-RRVSHPSRKTIGLRVPDHAITLAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    N    + + + K++ L+IDGG   +   ST++++   +
Sbjct: 133 LEELGQPLLSTTLIMPGETEPLNDPEEIRALLEKQLDLVIDGGAC-VCEPSTVIDLTGSE 191

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 192 PVLVRAGRG 200


>gi|146318504|ref|YP_001198216.1| translation factor (SUA5) [Streptococcus suis 05ZYH33]
 gi|146320695|ref|YP_001200406.1| translation factor (SUA5) [Streptococcus suis 98HAH33]
 gi|145689310|gb|ABP89816.1| Putative translation factor (SUA5) [Streptococcus suis 05ZYH33]
 gi|145691501|gb|ABP92006.1| Putative translation factor (SUA5) [Streptococcus suis 98HAH33]
 gi|292558285|gb|ADE31286.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis GZ1]
 gi|319758068|gb|ADV70010.1| putative translation factor (SUA5) [Streptococcus suis JS14]
          Length = 202

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L+ G  + +PTETVYGL   + N  A+ R+Y++K+RP    +  +VS+++ + 
Sbjct: 3   MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 62

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L   F PGPLT++L   +  ++     + L T  FR+P    T +LI 
Sbjct: 63  FFSQNTPFFLEKLYNRFMPGPLTIIL--KANDNVPFWVNSGLDTVGFRLPNHEQTLRLIS 120

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG  S       + +    ++P I D   +  G++STI+++   +K 
Sbjct: 121 ETG-PLIGPSANISGNESGKKFSD-IQAQFSVDLPGIEDD-QALTGIDSTILDLSG-QKA 176

Query: 190 RILRPGGLEIETLKRAISVELEYCV 214
           RILR G +  E +++AI  E+E+ V
Sbjct: 177 RILRQGAISREEIQKAI-PEIEFEV 200


>gi|188533748|ref|YP_001907545.1| hypothetical protein ETA_16060 [Erwinia tasmaniensis Et1/99]
 gi|188028790|emb|CAO96652.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
          Length = 206

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L+ G  I  PT++ Y L     +  A+ R+  I+K    +       D+S
Sbjct: 14  PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKNALERICRIRKLDGNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 74  ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +   + K + LII GG       +T++++  + 
Sbjct: 133 LEALNEPMMSTSLILPGNDFTESDPEAIQDELGKLVDLIIHGGYLGQ-QPTTVIDLTEDA 191

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +++  +
Sbjct: 192 P-EVVREGVGDVQPFR 206


>gi|148994241|ref|ZP_01823534.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|148998844|ref|ZP_01826280.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147755271|gb|EDK62322.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP11-BS70]
 gi|147927382|gb|EDK78413.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP9-BS68]
          Length = 199

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 1   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 61  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 174

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 175 KILRQGAIKREDILARL 191


>gi|171322306|ref|ZP_02911138.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MEX-5]
 gi|172061054|ref|YP_001808706.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6]
 gi|171092368|gb|EDT37729.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MEX-5]
 gi|171993571|gb|ACB64490.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria MC40-6]
          Length = 210

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAADIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD       K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGALE 203


>gi|153830131|ref|ZP_01982798.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 623-39]
 gi|148874395|gb|EDL72530.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 623-39]
          Length = 188

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|238020912|ref|ZP_04601338.1| hypothetical protein GCWU000324_00809 [Kingella oralis ATCC 51147]
 gi|237867892|gb|EEP68898.1| hypothetical protein GCWU000324_00809 [Kingella oralis ATCC 51147]
          Length = 206

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  I  PT++ Y +     + TA+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVRKGGVIVYPTDSCYAIGCALGDKTAMERILAIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD       K   PG  T +L          L     KT   RVP       L
Sbjct: 74  DLGTYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   +             + +   +   + L+IDGG       +T++++    
Sbjct: 133 LKELGEPMLSSTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDG- 190

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 191 -VELVRQG 197


>gi|148642672|ref|YP_001273185.1| Sua5/YciO/YrdC/YwlC family translation factor [Methanobrevibacter
           smithii ATCC 35061]
 gi|222445831|ref|ZP_03608346.1| hypothetical protein METSMIALI_01475 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551689|gb|ABQ86817.1| putative translation factor, Sua5/YciO/YrdC/YwlC family
           [Methanobrevibacter smithii ATCC 35061]
 gi|222435396|gb|EEE42561.1| hypothetical protein METSMIALI_01475 [Methanobrevibacter smithii
           DSM 2375]
          Length = 193

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 10/198 (5%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+I+       D   + +A + L  G  I  PT+TVYGL  +  N  A++R+Y IKKR  
Sbjct: 1   MKILKTNQNKVDKKVIDEAVKVLADGGVILYPTDTVYGLGANIFNRKAVKRVYNIKKRSY 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           + P+   VS    +   +      L+    + PGP T +L        H   T+      
Sbjct: 61  LKPISLLVSSKDAIPLVSRASVNQLNFMDKYLPGPYTFILKKSKIVPRH--LTSGSANVG 118

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP       L + +  P+   SAN S + +  +    +   +  E+ L+ID G  K  
Sbjct: 119 IRVPESEIACNLAKLF--PITTTSANISSE-NTLDTPEEILKQLGCEVDLVIDVGPLKSK 175

Query: 176 LESTIVNVQCEKKVRILR 193
             STI+++  E+ + + R
Sbjct: 176 NPSTIIDLTAEEPIFVKR 193


>gi|307127429|ref|YP_003879460.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           670-6B]
 gi|306484491|gb|ADM91360.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           670-6B]
          Length = 200

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 2   MDRIRQELEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|282163670|ref|YP_003356055.1| hypothetical protein MCP_1000 [Methanocella paludicola SANAE]
 gi|282155984|dbj|BAI61072.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 197

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 13/195 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N + +A   +  G  IA PTETVYG+   + +  A++R+Y+IK RP   PL   VS + M
Sbjct: 5   NDIARAAGIVKTGGVIAYPTETVYGIGALATDVGALQRVYQIKNRPLNQPLSIAVSSMEM 64

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           +K  A V+         F PGP+T++L       +  + TA  K    R P       + 
Sbjct: 65  LKSVAKVECE--DFILKFLPGPVTVIL--KKNKILPDILTARSKYIGIRWPDNKMALDLI 120

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   SAN  G+      + +  +     +  ++DGG  + G  STIV++     V
Sbjct: 121 NQTGPIVSTSANLHGEKDPVRAEEVKIA-----VDYVLDGGPCRYGAPSTIVDLHEYTVV 175

Query: 190 RILRPGGLEIETLKR 204
           R     G+  E ++R
Sbjct: 176 R----KGIMYEEVRR 186


>gi|212288263|sp|A1S1K5|RIMN_SHEAM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 187

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +    +++G  +A PTE VYGL  D  N TAI++L  +K+RP    LI   S    +K +
Sbjct: 8   QISGIIESGGVVAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWEKGLILIASSFDQLKPY 67

Query: 74  ASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
             +  ++   L   F  WPGP T V+   +  D+ P+      T   RV      + +  
Sbjct: 68  IDLSRVTEAQLQAAFDKWPGPFTFVIP--AKADVSPMLRGCFDTIAVRVSAHQDVRAMCY 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PL   SAN +G+     +  +  + +  +I  ++ G + +    STI+++Q     
Sbjct: 126 ACQKPLVSTSANLAGEQPALTLAEV-QTQLGDKIDAVVLGALGQSCQPSTIIDIQTGHIF 184

Query: 190 R 190
           R
Sbjct: 185 R 185


>gi|172079499|ref|ZP_02708045.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043340|gb|EDT51386.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC1873-00]
          Length = 200

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 2   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|238027994|ref|YP_002912225.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1]
 gi|237877188|gb|ACR29521.1| Sua5/YciO/YrdC/YwlC [Burkholderia glumae BGR1]
          Length = 211

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 85/204 (41%), Gaps = 8/204 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +R+A E +  G  IA+PT++ Y LA    +  A+ R+  I+     
Sbjct: 3   QFFRIHPENPQPRLVRQAVEIVKQGGVIAMPTDSSYALACQLDDRAAVERVRRIRGLDEK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             L   V D+S +   A VD     L K   PGP   VL          LS  + KT   
Sbjct: 63  QLLSLLVRDLSELANFAMVDNHQYRLIKSVTPGPYVFVLQATKEVP-RRLSHPSRKTIGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T  ++E  G PL   +          N    +   + K++ L+IDGG      
Sbjct: 122 RVPDHAITLAVLEALGEPLLGTTLILPPDTDPLNDPEEIRERLEKQVDLVIDGGACPR-E 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200
            STIV++   + V ++R G   +E
Sbjct: 181 PSTIVDLTGAEPV-LVRAGRGPLE 203


>gi|254247809|ref|ZP_04941130.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124872585|gb|EAY64301.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 210

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAVEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD       K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  + 
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEEIRTRLEKQVDLVIDGGACPR-EPSTVIDLTGDA 191

Query: 188 KVRILRPGGLEIE 200
              ++R G   +E
Sbjct: 192 P-ELVRAGRGALE 203


>gi|269959634|ref|ZP_06174014.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835557|gb|EEZ89636.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 206

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   + +G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRSGGVVVYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNAAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G     +    +   +   + +I++GG       +T+++   E 
Sbjct: 133 LEALGEPMMSTSLILPGSDVTESDPEDIRDKLEHAVDVILNGGYLGE-QPTTVIDF-SEG 190

Query: 188 KVRILRPGGLEIETLK 203
           +  + R G  +    +
Sbjct: 191 EAVVARVGSGDPAPFE 206


>gi|149006294|ref|ZP_01830006.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP18-BS74]
 gi|147762071|gb|EDK69033.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP18-BS74]
          Length = 199

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 1   MDRIRQELEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVASLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 61  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 174

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 175 KILRQGAIKREDILARL 191


>gi|15640086|ref|NP_229713.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587255|ref|ZP_01677028.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 2740-80]
 gi|121727865|ref|ZP_01680924.1| Sua5/YciO/YrdC family protein [Vibrio cholerae V52]
 gi|147673407|ref|YP_001218359.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395]
 gi|153817585|ref|ZP_01970252.1| Sua5/YciO/YrdC family protein [Vibrio cholerae NCTC 8457]
 gi|153821951|ref|ZP_01974618.1| Sua5/YciO/YrdC family protein [Vibrio cholerae B33]
 gi|229508338|ref|ZP_04397842.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
 gi|229508823|ref|ZP_04398314.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
 gi|229517094|ref|ZP_04406540.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
 gi|229520239|ref|ZP_04409666.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
 gi|229530161|ref|ZP_04419550.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 12129(1)]
 gi|229606613|ref|YP_002877261.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
 gi|254851618|ref|ZP_05240968.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MO10]
 gi|262155846|ref|ZP_06028968.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
 gi|81545625|sp|Q9KVT5|RIMN_VIBCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288233|sp|A5F4C5|RIMN_VIBC3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|9654448|gb|AAF93232.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|18254364|gb|AAL66733.1| Sua5/YciO/YrdC family protein [Vibrio cholerae]
 gi|121548501|gb|EAX58557.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 2740-80]
 gi|121629809|gb|EAX62224.1| Sua5/YciO/YrdC family protein [Vibrio cholerae V52]
 gi|126511853|gb|EAZ74447.1| Sua5/YciO/YrdC family protein [Vibrio cholerae NCTC 8457]
 gi|126520571|gb|EAZ77794.1| Sua5/YciO/YrdC family protein [Vibrio cholerae B33]
 gi|146315290|gb|ABQ19829.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395]
 gi|227011943|gb|ACP08153.1| Sua5/YciO/YrdC family protein [Vibrio cholerae O395]
 gi|229332294|gb|EEN97781.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae 12129(1)]
 gi|229342833|gb|EEO07824.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TM 11079-80]
 gi|229346157|gb|EEO11129.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae RC9]
 gi|229354098|gb|EEO19030.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae B33]
 gi|229354611|gb|EEO19533.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae BX 330286]
 gi|229369268|gb|ACQ59691.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae MJ-1236]
 gi|254847323|gb|EET25737.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MO10]
 gi|262030298|gb|EEY48940.1| YrdC family protein [Vibrio cholerae INDRE 91/1]
          Length = 188

 Score =  172 bits (436), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|223932124|ref|ZP_03624128.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 89/1591]
 gi|223899105|gb|EEF65462.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 89/1591]
          Length = 200

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L+ G  + +PTETVYGL   + N  A+ R+Y++K+RP    +  +VS+++ + 
Sbjct: 1   MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L   F PGPLT++L   +  ++     + L T  FR+P    T +LI 
Sbjct: 61  FFSQNTPFFLEKLYNRFMPGPLTIIL--KANENVPFWVNSGLDTVGFRLPNHEQTLRLIS 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG  S       + +    ++P I D   +  G++STI+++   +K 
Sbjct: 119 ETG-PLIGPSANISGNESGKKFSD-IQAQFSVDLPGIEDD-QALTGIDSTILDLSG-QKA 174

Query: 190 RILRPGGLEIETLKRAISVELEYCV 214
           RILR G +  E +++AI  E+E+ V
Sbjct: 175 RILRQGAISREEIQKAI-PEIEFEV 198


>gi|302023745|ref|ZP_07248956.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus suis 05HAS68]
 gi|330832778|ref|YP_004401603.1| putative translation factor (SUA5) [Streptococcus suis ST3]
 gi|329307001|gb|AEB81417.1| putative translation factor (SUA5) [Streptococcus suis ST3]
          Length = 202

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L+ G  + +PTETVYGL   + N  A+ R+Y++K+RP    +  +VS+++ + 
Sbjct: 3   MDKLRTILENGGAVILPTETVYGLFAQALNEDAVNRVYQLKQRPRDKAMNLNVSNLNDIY 62

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L   F PGPLT++L   +  ++     + L T  FR+P    T +LI 
Sbjct: 63  FFSQNTPFFLEKLYNRFMPGPLTIIL--KANENVPFWVNSGLDTVGFRLPNHEQTLRLIS 120

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG  S       + +    ++P I D   +  G++STI+++   +K 
Sbjct: 121 ETG-PLIGPSANISGNESGKKFSD-IQAQFSVDLPGIEDD-QALTGIDSTILDLSG-QKA 176

Query: 190 RILRPGGLEIETLKRAISVELEYCV 214
           RILR G +  E +++AI  E+E+ V
Sbjct: 177 RILRQGAISREEIQKAI-PEIEFEV 200


>gi|27573707|pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio
          Length = 221

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A  R+  I++ P  +       D+S
Sbjct: 29  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLS 88

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 89  ELSTYSFVDNVAFRLXKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGXRVPSNPIAQAL 147

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P    S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 148 LEALGEPXLSTSLXLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDT 206

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 207 PV-VVREG 213


>gi|315125143|ref|YP_004067146.1| double-stranded RNA-binding protein [Pseudoalteromonas sp. SM9913]
 gi|315013656|gb|ADT66994.1| double-stranded RNA-binding protein [Pseudoalteromonas sp. SM9913]
          Length = 187

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 7/189 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++D ++L  A   L+ G  I  PTE VYGL  D  N  A+ RL  IK+RP    LI    
Sbjct: 1   MSDLSSLSAAITSLEQGDVILYPTEAVYGLGCDPDNQQAVERLLSIKQRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + K+     L +   A +F  WPG LT V+    +T      T    T   RV   
Sbjct: 61  NYGQLLKYVDDAKLPMDKRADIFSSWPGALTWVMPAAKST--PKWLTGQFDTIAVRVTNH 118

Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              K+L + +G PL   SAN +GQ ++T++         +++   +D  +      STI 
Sbjct: 119 PTVKRLCQQFGKPLVSTSANLTGQATVTSIVEA-QQQFAEQVSFYVDEPLGGNTQPSTIK 177

Query: 182 NVQCEKKVR 190
           +       R
Sbjct: 178 DAMTGNVFR 186


>gi|153802780|ref|ZP_01957366.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-3]
 gi|124121693|gb|EAY40436.1| Sua5/YciO/YrdC family protein [Vibrio cholerae MZO-3]
          Length = 188

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTSSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|115380236|ref|ZP_01467257.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821629|ref|YP_003953987.1| sua5/ycio/yrdc/ywlc family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362760|gb|EAU61974.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394701|gb|ADO72160.1| Sua5/YciO/YrdC/YwlC family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 203

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 6/194 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E L  G  +A PT+T YGL  D  +  AI RLY++K R    PL     D+S
Sbjct: 15  PRHVSRAVEVLSRGGLVAYPTDTYYGLGCDLASKKAIERLYQLKGRDKKKPLSFLCPDLS 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            V K+A V   +    K   PG  T +L+  +T  +  +  +  K    RVP     + L
Sbjct: 75  DVAKYAHVSNFAYRTMKGLTPGAFTFILE--ATRIVPDMMMSRQKQVGIRVPDAPLARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
               G PL   SA+      + + +  +   +   + LI+DGG++ I   ST+V++  + 
Sbjct: 133 AAGLGRPLVTTSASDEEGEPLIDARD-IKERLGHGLDLILDGGVTLI-EPSTVVSLIGD- 189

Query: 188 KVRILRPGGLEIET 201
            + ILR G  +++ 
Sbjct: 190 SIEILRQGKGQLDA 203


>gi|125623427|ref|YP_001031910.1| putative translation factor [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492235|emb|CAL97164.1| putative translation factor [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070174|gb|ADJ59574.1| putative translation factor [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 306

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A + L  G  + +PTETVYGL  D+ N  A+++LY +K RP    L  +VS    + K
Sbjct: 110 ARAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILK 169

Query: 73  HASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           ++   P  L      F PGPLT++L+  +++++         T  FR+P    T+K+I+ 
Sbjct: 170 YSINTPDYLRKIVDAFLPGPLTIILE--ASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKE 227

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  L  PSAN +G  S +    +    +      + D   S  GL++TI+++  EK  +
Sbjct: 228 VGV-LVGPSANLTGSKSPSFFADLSPEILENAAVAVQDD--SIYGLDTTIIDLTQEKP-K 283

Query: 191 ILRPGGLEIETLKRAI 206
           +LR G +    L + +
Sbjct: 284 LLRQGAVTKAELLKKV 299


>gi|327470057|gb|EGF15521.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK330]
          Length = 196

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLKQLYQTFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLNLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDA-ALTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|254361757|ref|ZP_04977892.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
 gi|153093292|gb|EDN74288.1| possible RNA-binding protein [Mannheimia haemolytica PHL213]
          Length = 205

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  QRLINQAVEIIRNGGVIVYPTDSGYALGCAMGDKHAMDRIVAIRKLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V+  +  L K   P P T +L   +T ++        KT   RVP       L
Sbjct: 74  ELSIYALVNNQAYRLIKNNTPNPYTFILP--ATKELPRRLMTKRKTVGIRVPDNAIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S          +    +   +   + LII GG       +T+V++  + 
Sbjct: 132 ISALGEPILSCSLMLPETEMTESDPDEIRDHLQNRVDLIIHGGYLGQ-QPTTVVDLTDDV 190

Query: 188 KVRILRPG 195
            V I+R G
Sbjct: 191 PV-IIREG 197


>gi|308050243|ref|YP_003913809.1| translation factor SUA5 [Ferrimonas balearica DSM 9799]
 gi|307632433|gb|ADN76735.1| translation factor SUA5 [Ferrimonas balearica DSM 9799]
          Length = 206

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A   +  G  I  PT++ Y L     + +A+ R+  I++    +       D+S
Sbjct: 14  SRLINQAVATIHKGGVIVYPTDSGYALGCHIGDKSALERICRIRRLNEHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNAAFRLLKNNTPGPYTFIFKGTKEVP-RRLLNAKRKTIGIRVPDNNIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G+    +    +   +  ++ LI+ GG       +T+V+   E 
Sbjct: 133 LEALGEPMMSTSLILPGETLAESDPDDIRDKLEHQVDLILHGGFLGES-PTTVVDF-SEG 190

Query: 188 KVRILRPGG 196
           +  I+R G 
Sbjct: 191 EGEIVRVGA 199


>gi|238763131|ref|ZP_04624097.1| hypothetical protein ykris0001_40700 [Yersinia kristensenii ATCC
           33638]
 gi|238698630|gb|EEP91381.1| hypothetical protein ykris0001_40700 [Yersinia kristensenii ATCC
           33638]
          Length = 206

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ + L  G  +  PT++ Y L     +  A+ R+  I++    +       D+S
Sbjct: 14  PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKAAMERICRIRQLDGNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G     +    +  ++ K++ LII GG S     +T++++  + 
Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKENLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190

Query: 188 KVRILRPGGLEI 199
              ++R G  + 
Sbjct: 191 SPEVIREGAGDA 202


>gi|134296280|ref|YP_001120015.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia vietnamiensis G4]
 gi|134139437|gb|ABO55180.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia vietnamiensis G4]
          Length = 210

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLVKQAADIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  + 
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDA 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGALE 203


>gi|307704779|ref|ZP_07641675.1| yrdC domain protein [Streptococcus mitis SK597]
 gi|307621688|gb|EFO00729.1| yrdC domain protein [Streptococcus mitis SK597]
          Length = 199

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  ++  +  + 
Sbjct: 1   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVNHVYQLKRRPRDKALNLNIDSLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 61  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 174

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 175 KILRQGSIKREDILARL 191


>gi|84394230|ref|ZP_00992958.1| Putative translation factor [Vibrio splendidus 12B01]
 gi|84375144|gb|EAP92063.1| Putative translation factor [Vibrio splendidus 12B01]
          Length = 206

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLIIQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICKIRRIDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD ++  L K   PG  T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYARVDNVAFRLLKAHTPGAYTFIFKATKEVP-KRLMNAKRKTIGIRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G  +  +    +  S+   + +I++GG       +T+++   + 
Sbjct: 133 LEAMGEPLMSTSLILPGNETTESDPEEIRDSLEHAVDVILNGGYLGE-QPTTVIDFSDDD 191

Query: 188 KVRILRPGG 196
            V + R  G
Sbjct: 192 AVVLRRGAG 200


>gi|332360427|gb|EGJ38238.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK355]
          Length = 196

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLEQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   S  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQRIMMD-FQEEVSGVEDDA-SLTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|28899809|ref|NP_799414.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837692|ref|ZP_01990359.1| protein YrdC [Vibrio parahaemolyticus AQ3810]
 gi|260362026|ref|ZP_05775031.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus K5030]
 gi|260876487|ref|ZP_05888842.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AN-5034]
 gi|260897456|ref|ZP_05905952.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus Peru-466]
 gi|260901347|ref|ZP_05909742.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AQ4037]
 gi|81726622|sp|Q87KE2|RIMN_VIBPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|28808061|dbj|BAC61298.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748982|gb|EDM59809.1| protein YrdC [Vibrio parahaemolyticus AQ3810]
 gi|308087914|gb|EFO37609.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus Peru-466]
 gi|308090420|gb|EFO40115.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AN-5034]
 gi|308109865|gb|EFO47405.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus AQ4037]
 gi|308114150|gb|EFO51690.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus K5030]
 gi|328471159|gb|EGF42061.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 10329]
          Length = 185

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +    L  G  IA PTE V+G+  D  NP AI++L ++K+RP    LI   +    
Sbjct: 2   DNFEQVLNALQQGEVIAYPTEGVFGVGCDPDNPDAIQKLLDLKQRPVEKGLILIAASYEQ 61

Query: 70  VKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +       P  L      WPGP T ++   ++  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLTPEQLATVHATWPGPYTWIMP--ASDKVSNWVSGQFDSIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+   +G PL   SAN SG       + +    +  ++  I+ G  S     S I + + 
Sbjct: 120 KMCNAFGKPLTSTSANLSGLPPCMTTEEV-EQQLGDKLVAILRGETSGRDKPSEIRDAKT 178

Query: 186 EKKVR 190
            + +R
Sbjct: 179 SQILR 183


>gi|238788419|ref|ZP_04632212.1| hypothetical protein yfred0001_830 [Yersinia frederiksenii ATCC
           33641]
 gi|238723332|gb|EEQ14979.1| hypothetical protein yfred0001_830 [Yersinia frederiksenii ATCC
           33641]
          Length = 206

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ + L  G  +  PT++ Y L     + +A+ R+  I++    +       D+S
Sbjct: 14  PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKSAMERICRIRQLDGNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G     +    +   + K++ LII GG S     +T++++  + 
Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190

Query: 188 KVRILRPGGLEI 199
              ++R G  + 
Sbjct: 191 SPEVIREGAGDA 202


>gi|114319880|ref|YP_741563.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226274|gb|ABI56073.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 207

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 5/205 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            +I  +T     +++  E + AG  IA PT++ Y L        A+ R+ +I++    + 
Sbjct: 5   FEIHPVTPQVRLVKRTVEIIRAGGVIAYPTDSSYALGCGIGEKQAVDRIRQIRRLREDHN 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D+S +  +A V+  +  L K   PGP T +L   S      L     KT   RV
Sbjct: 65  FTLACRDLSDIGTYARVENYAYRLLKSHTPGPYTFILKATSKVP-RLLQHPKKKTIGIRV 123

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P    T+ ++E  G PL   S               + +++  ++  +IDGG   +   S
Sbjct: 124 PDHPTTQAILEELGEPLMTVSLIMPDDDMPITDPVDIRAALEHQVDAVIDGGPGGL-EPS 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           T+V++  E   R+LR G  +    +
Sbjct: 183 TVVDLSGEAP-RVLREGAGDPSVFE 206


>gi|319441090|ref|ZP_07990246.1| hypothetical protein CvarD4_04907 [Corynebacterium variabile DSM
           44702]
          Length = 218

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 82/199 (41%), Gaps = 5/199 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           +  G  I +PT+TVYG+  D+ +  A+  L   K R    P    V     V       D
Sbjct: 24  VKGGRLIVMPTDTVYGIGADAFDNDAVAALLVAKHRGPDYPTPVVVGSWDTVTGLVRDAD 83

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
                L + FWPG LT+V     +   +   T    T   R+P       +     P+A+
Sbjct: 84  ARMKALVEAFWPGGLTIVTHQAPSLPWNLGDT--RGTVALRMPLHPVAIELLQQTGPMAL 141

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN  GQ S  +        +   + + +DGG + IG  STIV++   ++ RILR G +
Sbjct: 142 SSANVHGQPSALSAAQA-REQLGDSVSVYLDGGPATIGTSSTIVDLSG-RRPRILRHGAI 199

Query: 198 EIETLKRAISVELEYCVDE 216
           E   +   + V  E     
Sbjct: 200 EAARVAEVLGVPEESLTQG 218


>gi|91217342|ref|ZP_01254302.1| putative Sua5/yciO/yrdC family protein [Psychroflexus torquis ATCC
           700755]
 gi|91184450|gb|EAS70833.1| putative Sua5/yciO/yrdC family protein [Psychroflexus torquis ATCC
           700755]
          Length = 205

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 13/207 (6%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++ I + N     L++  + L  G  +  PT+TVYGL  D  N  A+ ++  IK     
Sbjct: 3   ELIRIYEENPSEKELKRIVKILKKGGLVIYPTDTVYGLGCDINNTKALEKIARIKGIKLE 62

Query: 58  NP-LICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                    D+S + ++ A +D  +  + K   PGP T +L   +     P      KT 
Sbjct: 63  KANFSFVCQDLSNLSEYVAQLDSTTFKILKRNLPGPYTFILPGNNKL---PSVFKKKKTV 119

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173
             RVP     + L++  G+P+   S       I  T    +++    K + ++IDGG   
Sbjct: 120 GIRVPNNKIVQLLVQHLGNPIISTSIRDEDDVIEYTTDPELIAEKWGKLVDVVIDGGFGD 179

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200
             + ST+ ++  E + +++R G    +
Sbjct: 180 -NVASTVFDLT-ETEPKLIRQGKGSAD 204


>gi|89074767|ref|ZP_01161225.1| Putative Sua5/YciO/YrdC family protein [Photobacterium sp. SKA34]
 gi|89049531|gb|EAR55092.1| Putative Sua5/YciO/YrdC family protein [Photobacterium sp. SKA34]
          Length = 185

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
               +    L  G  I  PTE V+G+  D  N  A+ +L  IK+RP    LI   ++   
Sbjct: 2   ENFAQVVAALKQGEVIGYPTEAVFGVGCDPDNQDAVEKLLAIKQRPVEKGLILIAANYDQ 61

Query: 70  VKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+    +     WPGP+T V+      ++    T    T   RV      +
Sbjct: 62  LLSYIDESQLTEQQKQTVMATWPGPVTWVMPTKP--NVPSFLTGQFTTIAVRVSDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G P+   SAN +GQ      + +    +   +  I+ G        S I +   
Sbjct: 120 RLCLEFGKPITSTSANLTGQEPGRTAQEV-EQQLGHCLAAILQGETGGRTNPSEIRDALN 178

Query: 186 EKKVR 190
               R
Sbjct: 179 GNIFR 183


>gi|127514658|ref|YP_001095855.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella loihica PV-4]
 gi|212288223|sp|A3QJE8|RIMN_SHELP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|126639953|gb|ABO25596.1| translation factor SUA5 [Shewanella loihica PV-4]
          Length = 185

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 10/187 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D  AL    E +  G  IA PTE VYGL  D  N  AI++L ++K+RP    LI   SD 
Sbjct: 5   DPAAL---VETVLQGGVIAYPTEAVYGLGCDPDNDEAIQKLLDLKQRPWQKGLILVASDF 61

Query: 68  SMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
           + +  +     L+   L   F  WPGP T ++       +  L +    +   RV     
Sbjct: 62  NQLTPYIDSSVLTEAQLQSAFDKWPGPFTFIMPKRPG--LSSLLSGQFDSLAVRVSNHPG 119

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + L +  G P+   SAN +G+      + ++      +I  ++ G +      STI++V
Sbjct: 120 VQALCQALGKPIVSTSANLTGEEPALTPEEVIR-QFDGKIDGLVAGSLGAEPKPSTIIDV 178

Query: 184 QCEKKVR 190
              K +R
Sbjct: 179 ISGKILR 185


>gi|194397422|ref|YP_002037657.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae G54]
 gi|194357089|gb|ACF55537.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae G54]
          Length = 200

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++ +  + 
Sbjct: 2   MDRIRQELEKGGAVILPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|319936647|ref|ZP_08011060.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1]
 gi|319808204|gb|EFW04769.1| hypothetical protein HMPREF9488_01893 [Coprobacillus sp. 29_1]
          Length = 200

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +   + + + C  ++    +A PTETVYG+ V   +  A+ +L E K R     +   V
Sbjct: 3   KVVSVDEIEEVCNIIECNGVVAFPTETVYGVGVKFGSKIALDKLMEAKNRDYSKAITLMV 62

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           +D   ++K+A V   +  + + F PG +TLV     T D  P+ T   +T   R+P   +
Sbjct: 63  ADEKDIEKYAFVSDDAKKIVQAFMPGMITLVFKKKDTVD--PIMTNGKETIGIRIPDDQY 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L++  G P+ + SAN S   + T+ K +L+  +   I L++DG  +   + ST+V+V
Sbjct: 121 VLTLLKKAG-PMLVTSANLSNHPNTTSTKEVLN-QLDGRIDLVVDG-QTTDNVASTVVDV 177

Query: 184 QCEKKVRILRPGGLEIETLKRAIS 207
               +++ILR G +  E ++  + 
Sbjct: 178 -SRNEMKILREGKITKEDIQEVLK 200


>gi|238794708|ref|ZP_04638312.1| hypothetical protein yinte0001_18120 [Yersinia intermedia ATCC
           29909]
 gi|238725939|gb|EEQ17489.1| hypothetical protein yinte0001_18120 [Yersinia intermedia ATCC
           29909]
          Length = 206

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ + L  G  +  PT++ Y L     +  A+ R+  I++    +       D+S
Sbjct: 14  PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKAAMERICRIRQLDGNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G     +    +   + K++ LII GG S     +T++++  + 
Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKDHLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190

Query: 188 KVRILRPGGLEI 199
              ++R G  + 
Sbjct: 191 SPEVIREGAGDA 202


>gi|257386952|ref|YP_003176725.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM
           12286]
 gi|257169259|gb|ACV47018.1| Sua5/YciO/YrdC/YwlC family protein [Halomicrobium mukohataei DSM
           12286]
          Length = 193

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 8/198 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L +A + +D G  +  PTETVYGLA D+ +P A++R++++K R    P+   V  +  
Sbjct: 2   SDLDRAADAIDDGELVIYPTETVYGLAGDALDPDAVQRVFDVKGRDRSKPVSLAVPSVDA 61

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
              +       L   + F PGP+T++     +  +  + TA       RVP       + 
Sbjct: 62  ATDYTEPSERELAFMRAFLPGPVTVLARRRPS--VPDVLTAGRDRVGIRVPDHELALALL 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   SAN SG+ S   V   +  S+ +   +++DGG +  G EST+V+V  ++ V
Sbjct: 120 ERVAPITSTSANVSGEQSARTVDE-IGESVREGTAVVLDGGRTP-GTESTVVDVAADEIV 177

Query: 190 RILRPGGLEIETLKRAIS 207
           R     G + E ++  ++
Sbjct: 178 RE----GADCEAIREWLA 191


>gi|77359010|ref|YP_338585.1| double-stranded RNA-binding protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123587103|sp|Q3IDH7|RIMN_PSEHT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|76873921|emb|CAI85142.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 187

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 7/189 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++D + +  A   L  G  I  PTE VYGL  D  N  A+ RL  IK+RP    LI    
Sbjct: 1   MSDQSTIAAAITCLAQGEVILYPTEAVYGLGCDPDNQQAVERLLAIKQRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + K+     + +   A +F  WP  +T V+     T      T    T   RV   
Sbjct: 61  NYGQLLKYVDDAKIPMDKRADIFSSWPNAITWVMPAAKNT--PKWLTGQYDTIAVRVTNH 118

Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              K+L + +G PL   SAN SGQ ++ ++     S   ++I   +D  +      STI 
Sbjct: 119 PTVKRLCQEFGKPLVSTSANLSGQNTVLSIAEA-KSQFTEQIGYYVDEPLGGNTQPSTIK 177

Query: 182 NVQCEKKVR 190
           +    K  R
Sbjct: 178 DAMNGKVFR 186


>gi|107102729|ref|ZP_01366647.1| hypothetical protein PaerPA_01003796 [Pseudomonas aeruginosa PACS2]
 gi|218890608|ref|YP_002439472.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Pseudomonas aeruginosa LESB58]
 gi|218770831|emb|CAW26596.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Pseudomonas aeruginosa LESB58]
          Length = 209

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  I  PT++ Y L       TA+ R+  I++    +       D+S
Sbjct: 14  PRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PGP T +L          L     +T   RVP C   + L
Sbjct: 74  ELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVP-RMLLHPKRRTIGLRVPNCPIARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G+    N  + +   +  ++ LI+DGG    G  ST++++    
Sbjct: 133 LEELGEPLMSVSLIMPGRGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTD 191

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 192 P-EVIRVGC 199


>gi|322833322|ref|YP_004213349.1| Sua5/YciO/YrdC/YwlC family protein [Rahnella sp. Y9602]
 gi|321168523|gb|ADW74222.1| Sua5/YciO/YrdC/YwlC family protein [Rahnella sp. Y9602]
          Length = 206

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E L  G  I  PT++ Y L        A+ R+  I++  + +       D+S
Sbjct: 14  PRLINQAVELLRKGQVIVYPTDSGYALGCRLEEKNAMERICRIRQLDSNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 74  ELSTYAYVDNAAFRLMKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIAIAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G     +    +   + K + L+IDGG S     +T+V++  E 
Sbjct: 133 LEALGEPLMSTTLMLPGNDFAESDPEDIKDHLGKVVDLVIDGG-SIGQQPTTVVDLT-EA 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 APEVVREGA 199


>gi|261494041|ref|ZP_05990544.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496198|ref|ZP_05992604.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261308150|gb|EEY09447.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310207|gb|EEY11407.1| putative RNA-binding protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 205

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  QRLINQAVEIIRNGGVIVYPTDSGYALGCAMGDKHAMDRIVAIRKLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V+  +  L K   P P T +L   +T ++        KT   RVP       L
Sbjct: 74  ELSIYALVNNQAYRLIKNNTPNPYTFILP--ATKELPRRLMTKRKTVGIRVPDNAIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S          +    +   +   + LII GG       +T+V++  + 
Sbjct: 132 ISALGEPILSCSLMLPETEMTESDPDEIRDHLQNRVDLIIHGGYLGQ-QPTTVVDLTDDV 190

Query: 188 KVRILRPG 195
            V I+R G
Sbjct: 191 PV-IIREG 197


>gi|229524955|ref|ZP_04414360.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229338536|gb|EEO03553.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 188

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|170699294|ref|ZP_02890343.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria
           IOP40-10]
 gi|170135786|gb|EDT04065.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria
           IOP40-10]
          Length = 210

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  IAIPT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAADIVSKGGVIAIPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD       K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G    E
Sbjct: 192 P-QLVRAGRGAPE 203


>gi|322435977|ref|YP_004218189.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9]
 gi|321163704|gb|ADW69409.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium sp. MP5ACTX9]
          Length = 214

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 10/212 (4%)

Query: 2   QIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I     +   +      +++GL +A+PT+T YGLAVD  N  A+ R+Y +K R   
Sbjct: 4   EILRINPDEPEPALVDYIAGRIESGLLVALPTDTFYGLAVDPVNLRAVERIYHLKNRARH 63

Query: 58  NPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            PL   ++D++     A   D     LA+ FWPGPLT+++   S   +    TAN     
Sbjct: 64  KPLSLLIADVAQAYGLARECDTAFDRLAERFWPGPLTIIVKAGSKLPLR--VTANTGNVA 121

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + ++   G P+   SAN  G    T+   +    +  +IPLI+DGG +   
Sbjct: 122 LRVPEAPIARAVVAKLGLPITATSANLEGHAECTSASGV-REQLGDKIPLIVDGGPTART 180

Query: 176 LESTIVNVQCEK-KVRILRPGGLEIETLKRAI 206
           + +TIV++        ILR G +    +   +
Sbjct: 181 VATTIVDLSGGGNSWTILREGAIPTHEIALCL 212


>gi|123442466|ref|YP_001006445.1| hypothetical protein YE2207 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089427|emb|CAL12275.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 206

 Score =  171 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ + L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S
Sbjct: 14  PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNPAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G     +    +   + K++ LII GG S     +T++++  + 
Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKEYLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 SPEVIREGA 199


>gi|300312576|ref|YP_003776668.1| translation factor SUA5 [Herbaspirillum seropedicae SmR1]
 gi|300075361|gb|ADJ64760.1| translation factor (SUA5) protein [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 3/185 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  +A+PT++ Y L     N  A+ R+  I+     + L     D+S + 
Sbjct: 17  IKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVDEKHHLTLLCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           ++A VD     L K   PG  T +L+         LS  + KT   RVP       L+E 
Sbjct: 77  QYAKVDNRQYRLLKAATPGAYTFILEATKEVP-RRLSHPSRKTIGLRVPENRIAHMLLEE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   +               + S + K+I L+ID G   +   +T++++  +++  
Sbjct: 136 LGQPLLGTTLILPDDDLPLTSAEDIRSHLEKQIDLVIDSGACSL-EPTTVIDLTDDEQPV 194

Query: 191 ILRPG 195
           ++R G
Sbjct: 195 LVRQG 199


>gi|315613127|ref|ZP_07888037.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sanguinis ATCC
           49296]
 gi|315314689|gb|EFU62731.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sanguinis ATCC
           49296]
          Length = 200

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 2   MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPREKALNLNVASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + + T  FR+P    T  LI 
Sbjct: 62  HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGIATVGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175

Query: 190 RILRPGGLEIETL 202
           +ILR G ++ E +
Sbjct: 176 KILRQGAIKREDI 188


>gi|222478840|ref|YP_002565077.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC
           49239]
 gi|222451742|gb|ACM56007.1| Sua5/YciO/YrdC/YwlC family protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 199

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D++ LR+A E +  G  +  PTETVYGL  D+ +PTA+ R++++K R   NPL   V  +
Sbjct: 4   DTDTLRRAAEAVADGDLVVYPTETVYGLGGDALDPTAVERVFDLKGRERSNPLSLGVPSV 63

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
               ++      ++  A+ F PGP+T+V++      +    TA       RVP     + 
Sbjct: 64  DAALRYTKPTEFAVAFARAFLPGPVTVVVER--GDPVPDALTAGSDRVGVRVPDHPIARD 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   SAN SG+ S+T+    L   I + + ++ID G +  G EST+V+     
Sbjct: 122 LLRETGPLTATSANVSGRGSVTH-PDDLDDRIREGVAVVIDDGETP-GTESTVVD----P 175

Query: 188 KVRILRPGGLEIETLKRAIS 207
             R +   G     ++  + 
Sbjct: 176 DARTIHRRGAMAGAIEAWLD 195


>gi|310767749|gb|ADP12699.1| conserved uncharacterized protein [Erwinia sp. Ejp617]
          Length = 206

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L+ G  I  PT++ Y L     + +A+ R+  I++    +       D+S
Sbjct: 14  PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 74  ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +   I K + LII GG       +T++++  E 
Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGYLGQ-QPTTVIDLT-EV 190

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +I+  +
Sbjct: 191 APEVVREGVGDIQPFR 206


>gi|153004978|ref|YP_001379303.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028551|gb|ABS26319.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. Fw109-5]
          Length = 235

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L +G  +A PT+T YGL  D  +  AI R+Y++K+ P  + L     D++
Sbjct: 44  PRVVERAVSVLSSGGLLAFPTDTYYGLGCDLFDKRAIERIYQLKQLPRSHELSFICQDLA 103

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + ++A VD  +  + +   PGP T +L   +T  +  L     KT   R+P      ++
Sbjct: 104 EISRYAIVDNAAYRVLRRKVPGPYTFILP--ATRLVPDLVLRRQKTVGIRIPDSPIALEI 161

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   GHPL   SA   G   + +  H +   +   + L++DGG       S+++++   +
Sbjct: 162 VRRLGHPLISTSAATPGGEVLIDA-HDIKEQLGHGLDLVLDGGYKP-NEPSSVIDLSGAE 219

Query: 188 KVRILRPGGLEIETL 202
             R+LR G  ++  L
Sbjct: 220 P-RVLRAGKGDVSDL 233


>gi|37526349|ref|NP_929693.1| hypothetical protein plu2456 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785780|emb|CAE14830.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 206

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ + L  G  +  PT++ Y +     +  ++ R+  I++  + +       D+S
Sbjct: 14  PRLIGQSVDMLKKGGVVIYPTDSGYAIGCHLEDKDSMTRICRIRQLDSHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  EISTYAYVDNSAFRLIKNNTPGNYTFILRATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +  ++ K++ LII GG       +T++++  + 
Sbjct: 133 LEQVGEPLMSTSLILPGNDFAESDPEEIKDNLGKQVDLIIHGGYLGQ-QPTTVIDLTEDT 191

Query: 188 KVRILRPGGLEI 199
            V ++R G   I
Sbjct: 192 PV-VIREGAGNI 202


>gi|116749551|ref|YP_846238.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698615|gb|ABK17803.1| translation factor SUA5 [Syntrophobacter fumaroxidans MPOB]
          Length = 204

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 5/189 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   ++K  E L  G  IA PT+T YG+  D  N  +I R+Y +K+R    P     +D+
Sbjct: 11  EPRKIQKIVEVLANGGIIAYPTDTYYGIGCDLFNKASIERIYLMKRRSPQQPFSFICNDL 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             + ++A V   +    K   PGP T VL+   +  +  +     +T   RVP       
Sbjct: 71  KNISEYAQVTNYAYKTMKRLLPGPYTFVLE--GSRLVPKIMLTKRQTVGIRVPDNPICLA 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +++  GHP+   SA       I      +   +   + LI+DGG    G  S+++++  +
Sbjct: 129 IVQELGHPIISTSATNPETNQILASPQEIKEILGHTLDLIVDGGNV-SGKPSSVISLIDD 187

Query: 187 KKVRILRPG 195
               +LR G
Sbjct: 188 SP-EVLRVG 195


>gi|152987724|ref|YP_001347308.1| hypothetical protein PSPA7_1927 [Pseudomonas aeruginosa PA7]
 gi|150962882|gb|ABR84907.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 209

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  I  PT++ Y L       TA+ R+  I++    +       D+S
Sbjct: 14  PRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PGP T +L          L     +T   RVP C   + L
Sbjct: 74  ELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVP-RMLLHPKRRTIGLRVPNCPIARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     N  + +   +  ++ LI+DGG    G  ST++++    
Sbjct: 133 LEELGEPLMSVSLIMPGSSEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTD 191

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 192 P-EVIRVGC 199


>gi|323351593|ref|ZP_08087247.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis VMC66]
 gi|322122079|gb|EFX93805.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis VMC66]
          Length = 196

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L A   + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKILAASGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKKQPSYLKQLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDA-TLTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|39996696|ref|NP_952647.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sulfurreducens PCA]
 gi|39983577|gb|AAR34970.1| Sua5/YciO/YrdC/YwlC family protein [Geobacter sulfurreducens PCA]
 gi|298505707|gb|ADI84430.1| tRNA (N6-threonylcarbamoyl-A37) modification ATPase [Geobacter
           sulfurreducens KN400]
          Length = 203

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +    E L  G  IA PT+T YG+     +   I R+Y +K+R    P     S++S
Sbjct: 12  ARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELS 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++A V   +  + K + PGP T V+D  +T+ +  L     KT   R+P       L
Sbjct: 72  EVARYAKVSNYAYKILKRYLPGPYTFVID--ATSVVPDLLVTKQKTVGIRIPDNRICIAL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  GHP+   SAN SG+  I +   +   ++ K++ L++DGG     + S++V++  + 
Sbjct: 130 VKELGHPIVTTSANLSGEEPIGDPLEV-ERTLGKQLDLVVDGGNLTADV-SSVVSLIGDY 187

Query: 188 KVRILRPG 195
             ++LR G
Sbjct: 188 P-QVLRRG 194


>gi|327482964|gb|AEA77371.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae LMA3894-4]
          Length = 185

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 2   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 62  LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 120 KLCLAFGKPLTSTSANLSGQRACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 178

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 179 ---LQVLRQG 185


>gi|148272340|ref|YP_001221901.1| hypothetical protein CMM_1160 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830270|emb|CAN01204.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 309

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 105/229 (45%), Gaps = 9/229 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R A + +  G  + IPT+TVYG+A D+ NP A++RL + K R    P    +   S 
Sbjct: 15  TGMRLARQAVGRGEVVVIPTDTVYGIAADAFNPDAVQRLLDAKGRGRDAPPPVLIPGQST 74

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +   A  V  +   L   FWPG LT++L    +  +         T   R+P       +
Sbjct: 75  LDALADFVPDVVRRLVDEFWPGGLTVILVAQPS--LVWDLGETRGTVALRMPANSFALEL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ---- 184
                PLA+ SANR+GQ +    +  +   +   + + +DGG +     STIV+      
Sbjct: 133 LAETGPLAVSSANRTGQPAAATAQEAV-DQLGGSVDVFLDGGAAGG-AASTIVDASRVTQ 190

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPR 233
              +VRI+R G +    +++ I  ELE  V   + P+ P +  +  APR
Sbjct: 191 AGGRVRIVREGAITRAQIQQLIGDELEPVVTAPTEPEEPAVPDAPEAPR 239


>gi|116753773|ref|YP_842891.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta thermophila PT]
 gi|116665224|gb|ABK14251.1| translation factor SUA5 [Methanosaeta thermophila PT]
          Length = 198

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 12/207 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++  TD     +A   + +G  +  PTETVYG+  ++ + ++I R+Y IK+RP   P+
Sbjct: 3   MAVVGGTD-----EAARCILSGGIVVYPTETVYGIGANALDESSIVRVYAIKRRPLDKPI 57

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              VS   M+   A V P  L + +   PGP+T ++   S   +  + TA       R P
Sbjct: 58  SIAVSSFEMLCDVAHVRPEDLDMMRKLLPGPVTFLVRKRSI--VPDMLTAGSPLVGVRYP 115

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  +     P+   SAN +G    ++ K  +   I   + ++IDGG  +  + ST+
Sbjct: 116 DHEMALRLIEMTGPITSTSANITGAPPPSDPKE-IDPEILSRVDMLIDGGRCRYAVPSTL 174

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS 207
           V++      RILR G +  + +   I 
Sbjct: 175 VDLSTR---RILRMGAM-ADRVLEVIG 197


>gi|325694522|gb|EGD36431.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK150]
          Length = 196

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 8/198 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNEEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L HL + F PGPLT++L   +   +     + ++T  FR+P    T  LI+
Sbjct: 61  AFSKNQPSYLDHLYQAFLPGPLTIILQ--ANDRVPTWINSGMETVGFRIPKHPVTLDLIQ 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  + D   +  G +STI+++  EK  
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGVEDDA-ALTGQDSTILDLSGEK-A 174

Query: 190 RILRPGGLEIETLKRAIS 207
            ILR G +  E +   ++
Sbjct: 175 HILRQGVITREDILARVN 192


>gi|288575494|ref|ZP_05977046.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria mucosa ATCC 25996]
 gi|288567761|gb|EFC89321.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria mucosa ATCC 25996]
          Length = 227

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 3/192 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + + +G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 35  ERLIKQATDIVRSGGVVVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLS 94

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD       K   PG  T +L          L     KT   RVP       L
Sbjct: 95  ELGTYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNTIALSL 153

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 154 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 212

Query: 188 KVRILRPGGLEI 199
           ++     G + +
Sbjct: 213 ELIRQGKGDITL 224


>gi|149190428|ref|ZP_01868699.1| Sua5/YciO/YrdC family protein [Vibrio shilonii AK1]
 gi|148835682|gb|EDL52648.1| Sua5/YciO/YrdC family protein [Vibrio shilonii AK1]
          Length = 185

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              L +G  IA PTE V+G+  D  + +AI +L  +K+RP    LI   ++   ++ +  
Sbjct: 8   VAALKSGEVIAYPTEGVFGVGCDPDDVSAIEKLLAVKQRPVEKGLILIAANYEQLRPYVD 67

Query: 76  VDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
              L+    +     WPGP T ++   ++  +    +    T   RV      ++L  +Y
Sbjct: 68  ETKLTATQLESVQNTWPGPYTWIMP--ASDRVSSWLSGAFDTIAVRVTDHELVQQLCLSY 125

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+   SAN SG  S    + +  S +   +  I+DG        S I + +    +++
Sbjct: 126 GKPITSTSANLSGMPSCMTTEEV-KSQLGDRLAEILDGETGGRNKPSEIRDART---LKV 181

Query: 192 LRPG 195
           LR G
Sbjct: 182 LRQG 185


>gi|261343645|ref|ZP_05971290.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rustigianii DSM
           4541]
 gi|282568028|gb|EFB73563.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rustigianii DSM
           4541]
          Length = 206

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 5/183 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + ++ + L+ G  +  PT++ Y +     +  A++R+  I++  A +       D+S
Sbjct: 14  ARLISQSVDILNKGGVVVYPTDSGYAIGCRLEDKDALQRICRIRQLDANHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  EISNYAHVDNTVFRLIKNNTPGNYTFILKGTKEVP-RRLMNEKKKTIGLRVPSNPIARDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           +E  G PL   S    G     +    +   + K++ L+I GG   IG   +T+++   +
Sbjct: 133 LEAVGEPLMSTSLILPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTVIDFTDD 190

Query: 187 KKV 189
             V
Sbjct: 191 VPV 193


>gi|83647680|ref|YP_436115.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396]
 gi|83635723|gb|ABC31690.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396]
          Length = 205

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 6/193 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +R+A E + +G  I  PT++ Y L     +  A  R+  I++    +       D+S
Sbjct: 14  ARLVRQAVEIIHSGGVIVYPTDSGYALGCAIGDKNAADRIKSIRRLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PG  T +L   S      L     +    RVP     + L
Sbjct: 74  DISTYAKVDNSTYRLLKNHTPGAYTFILTATSEVP-RRLLHPKRRQIGIRVPDNRIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186
           +E  G PL   +    G+       + +   +   + LIIDGG    G+E T +V++  +
Sbjct: 133 LEELGAPLMSSTLIMPGEEMPMTDPYEIRQMLEHAVDLIIDGGFC--GMEPTSVVDLTDD 190

Query: 187 KKVRILRPGGLEI 199
             V ILR G  ++
Sbjct: 191 APV-ILREGAGDV 202


>gi|68171141|ref|ZP_00544550.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658214|ref|YP_507600.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999466|gb|EAM86106.1| Sua5/YciO/YrdC/YwlC [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599671|gb|ABD45140.1| Sua5/YciO/YrdC/YwlC family protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 194

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 7/196 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L     I  PTETVY LA  + +  A++++Y+IK R    PL   +S+I  +K
Sbjct: 2   ISEAVQALKNKHLILFPTETVYALAGSAYSIEAVQKIYQIKGRSYNKPLSLLLSNIDKIK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + +++   +  + +   PGP+T VL + +   +         T   R+P      +++  
Sbjct: 62  QFSTLTEHTFKIIQKLSPGPVTFVLPIHNYNKLPRQFFN--DTIGIRIPDHPIALEILSN 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           + +P+   S N SGQ S+T   H +  +I + I +II+      G+EST++++      +
Sbjct: 120 FDNPVVGTSVNISGQPSVT-ASHQVQETIKQHISVIIEDDSLVNGIESTVIDLTS---YK 175

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G +  + ++  I
Sbjct: 176 ILRTGAVSEKKIQDII 191


>gi|157961471|ref|YP_001501505.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella pealeana ATCC
           700345]
 gi|157846471|gb|ABV86970.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella pealeana ATCC
           700345]
          Length = 206

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  I  PT++ Y L     +  A+ ++  I++    +       D S
Sbjct: 14  ARLISQAVNVIKTGGVIVYPTDSGYALGCLIGDKDAMSKIARIRQIDNDHNFSLMCRDQS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELATYARVDNQAYRLLKQNTPGPYTFIFMASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G+    +    +   +  ++ LII GG       +T++++  + 
Sbjct: 133 LEALGEPLMSTSLILPGKEFTESDPEHIRDILEHQVDLIIHGGYLGE-KPTTVIDL-SDG 190

Query: 188 KVRILRPGGLEI 199
           ++ ++R G  ++
Sbjct: 191 EIEVIREGAGDV 202


>gi|293395933|ref|ZP_06640214.1| Sua5/YciO/YrdC/YwlC family protein [Serratia odorifera DSM 4582]
 gi|291421431|gb|EFE94679.1| Sua5/YciO/YrdC/YwlC family protein [Serratia odorifera DSM 4582]
          Length = 206

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E L  G  I  PT++ Y L        A+ R+  I++    +       D+S
Sbjct: 14  PRLINQAVEVLRKGGVIVYPTDSGYALGCKLEEKAAMERICRIRQLDGNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNSAFRLIKNNTPGHYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   +    G     +    +S  + K++ L+I GG       +T++++  E 
Sbjct: 133 LEELNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVELVIHGGFLGQ-QPTTVIDLT-ES 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 SPEVVREGA 199


>gi|167044297|gb|ABZ08976.1| putative yrdC domain protein [uncultured marine crenarchaeote
           HF4000_APKG6B14]
          Length = 199

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 7/205 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I S +D++ ++ A + ++ G  +  PT+TVYGL  +  N  A+  LYEIKKR    P 
Sbjct: 1   MKI-SCSDAD-IQIAAKAINDGATVVFPTDTVYGLGCNPYNHEAVLSLYEIKKRKKTKPF 58

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                    ++K A  +PL   +A+ FWPGP+TL+L +        L          RVP
Sbjct: 59  PVIGYAKKELEKIAEFNPLEEKIAEKFWPGPITLILKVKDKEIQKSL--GLDGKIAVRVP 116

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  +      L   SAN SG  +  N     S ++     L++DGGI     ESTI
Sbjct: 117 NNQCVLALLKECKLLVATSANISG-TAPFNDPKECSENLSG-YDLLMDGGIISSQGESTI 174

Query: 181 VNVQCEKKVRILRPGGLEIETLKRA 205
           V ++    VRILR G +  E +K+ 
Sbjct: 175 VEIENND-VRILRKGNVSEEEIKKI 198


>gi|260913990|ref|ZP_05920464.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC
           43325]
 gi|260632077|gb|EEX50254.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC
           43325]
          Length = 207

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 7/194 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S
Sbjct: 14  ARLINQAVEILRRGGVIIYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  ++ V+  +  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYSLVNNTAYRLIKNNTPGRYTFILAATKELP-RRLMTSKRKTIGIRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           ++  G P+   S    G+  IT +    +   + +++ LII GG   +G E +T+V++  
Sbjct: 133 LKALGEPILSCSLMLPGEEYITQSDPEEIRDRLERQVDLIIHGGY--LGQEPTTVVDLTE 190

Query: 186 EKKVRILRPGGLEI 199
           +  V ILR G   I
Sbjct: 191 DTPV-ILREGSGSI 203


>gi|159901360|ref|YP_001547607.1| Sua5/YciO/YrdC/YwlC family protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894399|gb|ABX07479.1| Sua5/YciO/YrdC/YwlC family protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 207

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 6/185 (3%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLH 82
            +  PT+TVYG+   + +  AI ++++ K RPA   L   ++D+  + K A  +  L+  
Sbjct: 25  ILCFPTDTVYGIGGSALDEAAIAQVFQAKARPATVALPMLLADLDDLSKVARDIPDLAWR 84

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
           LA+ +WPG LTLVL  ++   +  L TA   T   RVP     + LI  +G P+A  SAN
Sbjct: 85  LAEAWWPGGLTLVLPAVA--QLPQLLTAGKATIAVRVPNHGQLRNLIRQFGTPIAGTSAN 142

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
             G+ +    + + +  +   +PL++DGG +     STIV++  E+   ILR G +    
Sbjct: 143 LHGKATPNTAQAV-AEQLAGRVPLVLDGGFAMGEQPSTIVDLSGEQP-TILRQGVISAAQ 200

Query: 202 LKRAI 206
           L   +
Sbjct: 201 LSPWL 205


>gi|90581183|ref|ZP_01236982.1| Putative Sua5/YciO/YrdC family protein [Vibrio angustum S14]
 gi|90437704|gb|EAS62896.1| Putative Sua5/YciO/YrdC family protein [Vibrio angustum S14]
          Length = 185

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +    L  G  I  PTE V+G+  D  N  A+ +L  IK+RP    LI   ++   
Sbjct: 2   DNFAQVVAALKQGEVIGYPTEAVFGVGCDPDNQEAVEKLLAIKQRPVEKGLILIAANYEQ 61

Query: 70  VKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+    +     WPGP+T V+      ++    T    T   RV      +
Sbjct: 62  LLSYIDESLLTEQQKQTVMATWPGPVTWVMPTKP--NVPSFLTGQFTTIAVRVSDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G P+   SAN +GQ      + +    +   +  I+ G        S I +   
Sbjct: 120 RLCLEFGKPITSTSANLTGQEPGRTAQEV-EQQLGHCLAAILQGETGGRTNPSEIRDALN 178

Query: 186 EKKVR 190
               R
Sbjct: 179 GNIFR 183


>gi|153217569|ref|ZP_01951250.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 1587]
 gi|229515908|ref|ZP_04405365.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
 gi|124113481|gb|EAY32301.1| Sua5/YciO/YrdC family protein [Vibrio cholerae 1587]
 gi|229347008|gb|EEO11970.1| Sua5 YciO YrdC YwlC family protein [Vibrio cholerae TMA 21]
          Length = 188

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A   L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVNALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|33152183|ref|NP_873536.1| hypothetical protein HD1051 [Haemophilus ducreyi 35000HP]
 gi|33148405|gb|AAP95925.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 205

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E +  G  I  PT++ Y L        A+ R+  I+K P  +      SD++ + 
Sbjct: 17  INQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLAELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V   S  L K   P P T +L   +T D+        KT   RVP       LI  
Sbjct: 77  TYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNTIALALISA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   S          +    +   +   + LII GG       +T+V++  +  + 
Sbjct: 135 LGEPILSCSLMLPDTEITESDPDEIRQHLEHRVDLIIHGGYLGQ-QPTTVVDLTGDTPM- 192

Query: 191 ILRPGGLEI 199
           ILR G  ++
Sbjct: 193 ILREGSGDL 201


>gi|259908328|ref|YP_002648684.1| hypothetical protein EpC_16760 [Erwinia pyrifoliae Ep1/96]
 gi|224963950|emb|CAX55455.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|283478266|emb|CAY74182.1| Uncharacterized protein yciO [Erwinia pyrifoliae DSM 12163]
          Length = 206

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L+ G  I  PT++ Y L     + +A+ R+  I++    +       D+S
Sbjct: 14  PRLIKQAVEMLNKGSVIVYPTDSGYALGCKLEDKSAMERICRIRQLDGNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 74  ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +   I K + LII GG       +T++++  E 
Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEAIQDEIGKLVDLIIHGGYLGQ-QPTTVIDLT-EV 190

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +++  +
Sbjct: 191 APEVVREGVGDVQPFR 206


>gi|224026570|ref|ZP_03644936.1| hypothetical protein BACCOPRO_03327 [Bacteroides coprophilus DSM
           18228]
 gi|224019806|gb|EEF77804.1| hypothetical protein BACCOPRO_03327 [Bacteroides coprophilus DSM
           18228]
          Length = 203

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 90/201 (44%), Gaps = 9/201 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              + + +++  + L+ G  I  PT+T+Y +   +     I R+ ++KK  P  + L   
Sbjct: 8   KNNNPDDIQRVVDILNDGGIIIYPTDTMYAIGCHALKERPIERICKLKKIDPRKHNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A V+  +  L K   PGP T +L+  S     P    N K    RVP   
Sbjct: 68  CYDLSNISEYARVNNATFKLMKRCLPGPFTFILNADSRL---PKIFRNRKEVGIRVPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++  +   P+   +  R     I       ++     +E+ L+IDGGI  I   ST+
Sbjct: 125 IIREICRSLDAPILTTTLPREEHEDIEYVTDPELIDEKFGEEVDLVIDGGIGGI-ESSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           ++  C+ +  I+R G   +E 
Sbjct: 184 IDC-CDDEPEIIRQGKGILEE 203


>gi|297581913|ref|ZP_06943833.1| Sua5/YciO/YrdC family protein [Vibrio cholerae RC385]
 gi|297533780|gb|EFH72621.1| Sua5/YciO/YrdC family protein [Vibrio cholerae RC385]
          Length = 188

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWIRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTRQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|49079254|gb|AAT49871.1| PA3199 [synthetic construct]
          Length = 210

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  I  PT++ Y L       TA+ R+  I++    +       D+S
Sbjct: 14  PRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PGP T +L          L     +T   RVP C   + L
Sbjct: 74  ELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVP-RMLLHPKRRTIGLRVPNCPIARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     N  + +   +  ++ LI+DGG    G  ST++++    
Sbjct: 133 LEELGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTD 191

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 192 P-EVIRVGC 199


>gi|15602527|ref|NP_245599.1| hypothetical protein PM0662 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720939|gb|AAK02746.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 207

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 5/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L AG  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRAGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            ++ V+ ++  L K   PG  T +L          L T+  KT   RVP       L+ T
Sbjct: 77  TYSLVNNMAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALALLST 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            G P+   S    G+ ++T +    +   + K++ LII GG       +T+V++  +  +
Sbjct: 136 LGEPILSCSLMLPGEENVTQSDPEEIRDRLEKQVDLIIHGGY-LGAEPTTVVDLTNDTPI 194

Query: 190 RILRPGGLE 198
            I+R G   
Sbjct: 195 -IIREGSGS 202


>gi|293375560|ref|ZP_06621834.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sanguinis PC909]
 gi|292645777|gb|EFF63813.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sanguinis PC909]
          Length = 223

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 6/218 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     L +    L     I  PT+TVYG+  +  +P A+ +++E+K RP    LI   +
Sbjct: 2   IFKKEQLSEIIGQLHEDDVIVFPTDTVYGIGANIHSPIALNKIFEVKNRPTDKSLIILCA 61

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           ++  +++    +D     L   F PG LTL+L+     ++    T    T   R+P    
Sbjct: 62  NVMQMEEIVGPLDQQVKVLVDNFLPGGLTLILNT--KLELADEITRGKSTIGLRIPNHPV 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              +     PLA  SAN SG+ S T ++   S+ +   +  +ID G +   + STI++  
Sbjct: 120 ALELLEKVGPLATTSANISGEPSPTMIE--TSNPVISRVKFVIDDGETMEKVPSTILDCT 177

Query: 185 CEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
            + ++ ILR G +  E +K+ +  ++   + + S+  S
Sbjct: 178 -QSEIVILRQGAISEEEIKKVLKNKVRCIILKKSSILS 214


>gi|262191286|ref|ZP_06049480.1| YrdC family protein [Vibrio cholerae CT 5369-93]
 gi|262032824|gb|EEY51368.1| YrdC family protein [Vibrio cholerae CT 5369-93]
          Length = 188

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTADQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQRACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|15598395|ref|NP_251889.1| hypothetical protein PA3199 [Pseudomonas aeruginosa PAO1]
 gi|116051189|ref|YP_789980.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC family protein
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254236161|ref|ZP_04929484.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241887|ref|ZP_04935209.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296388314|ref|ZP_06877789.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC family protein
           [Pseudomonas aeruginosa PAb1]
 gi|313108516|ref|ZP_07794517.1| putative Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa
           39016]
 gi|9949319|gb|AAG06587.1|AE004744_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115586410|gb|ABJ12425.1| putative SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168092|gb|EAZ53603.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126195265|gb|EAZ59328.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|310881019|gb|EFQ39613.1| putative Sua5/YciO/YrdC/YwlC protein family [Pseudomonas aeruginosa
           39016]
          Length = 209

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  I  PT++ Y L       TA+ R+  I++    +       D+S
Sbjct: 14  PRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRIRQLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PGP T +L          L     +T   RVP C   + L
Sbjct: 74  ELGVYAKVDTGLFRLLKAHTPGPYTFILSATREVP-RMLLHPKRRTIGLRVPNCPIARAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     N  + +   +  ++ LI+DGG    G  ST++++    
Sbjct: 133 LEELGEPLMSVSLIMPGSGEPLNDPYEMRQVLEHQVDLIVDGGYGG-GEASTVISLTDTD 191

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 192 P-EVIRVGC 199


>gi|328951772|ref|YP_004369106.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328452096|gb|AEB07925.1| Sua5/YciO/YrdC/YwlC family protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 202

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
               LR+  + L AG  IA PT+T YG+  D  N  AI ++Y+ KKRP   P     +D+
Sbjct: 11  PERLLRRVVQVLTAGGIIAYPTDTCYGIGCDLFNKKAIEKIYQFKKRPLTKPFSFICADL 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             + ++A V   +    +   PGP T +L+   +  +  +     KTA  RVP       
Sbjct: 71  KHISEYAKVSNFAYKTMRRLLPGPYTFILE--GSRLVPKIMLTRRKTAGLRVPDNAICLG 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  GHP+   SA+R    S+ +  + ++      + L+IDGG+      S+++++  +
Sbjct: 129 LVKLLGHPIISTSASREDG-SVMSDPYDIAEYYKPPLDLVIDGGVIAPA-PSSVISLIGD 186

Query: 187 KKVRILRPGGLEIET 201
               ++R G  E+  
Sbjct: 187 VP-EVIREGKGEVSD 200


>gi|330447323|ref|ZP_08310973.1| protein involved in synthesis of
           threonylcarbamoyladenosine-modified tRNA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491514|dbj|GAA05470.1| protein involved in synthesis of
           threonylcarbamoyladenosine-modified tRNA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 185

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
               +    L  G  I  PTE V+G+  D  N  A+ +L EIK+RP    LI   ++   
Sbjct: 2   ENFAQVVAALKQGEVIGYPTEAVFGVGCDPDNQQAVEKLLEIKQRPVEKGLILIAANYDQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+          WPGP+T V+   +  ++    T    T   RV      +
Sbjct: 62  LLPYIDESQLTAEQKAAVMATWPGPVTWVMPTKA--NVPAFLTGQFTTIAVRVSDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L   +G P+   SAN +GQ      + +    +   +  I+ G        S I + + 
Sbjct: 120 RLCLEFGKPITSTSANLTGQEPGRTAQEV-EQQLGHCLAAILQGETGGRTNPSEIRDARN 178

Query: 186 EKKVR 190
               R
Sbjct: 179 GNIFR 183


>gi|255067572|ref|ZP_05319427.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sicca ATCC 29256]
 gi|255048193|gb|EET43657.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sicca ATCC 29256]
          Length = 206

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + + +G  I  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAADIVRSGGVIVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD       K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELGTYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNTIALSL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 133 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHSVDLVIDGGWCGT-EPTTVIDMTDGT 191

Query: 188 KVRILRPG 195
           ++  +R G
Sbjct: 192 EL--IRQG 197


>gi|115352187|ref|YP_774026.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD]
 gi|115282175|gb|ABI87692.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia ambifaria AMMD]
          Length = 210

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAADIVSKGGVIAMPTDSSYALACHLDDKGAVERVRRIRGLDDKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD       K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRQIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LESLGQPLLGTTLILPPDDEPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGALE 203


>gi|58617022|ref|YP_196221.1| hypothetical protein ERGA_CDS_02950 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416634|emb|CAI27747.1| Conserved hypothetical protein (putative translation factor SUA5
           family) [Ehrlichia ruminantium str. Gardel]
          Length = 199

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 7/197 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E L     I  PTETVY LA D+ +   I+++Y+IK RP   P+   +S+I  +K
Sbjct: 2   ISKAVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + +++   + ++ +   PGP+T +L + +   +      N      R+P       ++  
Sbjct: 62  QFSNLTEHTAYIIQELSPGPITFILPIHNYGKLPKQFFYNK--IGIRIPNHPIALAILNN 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           + HP+   S N SGQ   T+V   +S +I K I  IID      G  ST++++      +
Sbjct: 120 FDHPITATSVNISGQQDATSVDQ-ISDNIKKNISFIIDNNRLVHGTASTVIDLTS---YK 175

Query: 191 ILRPGGLEIETLKRAIS 207
           ILR G +  + ++  + 
Sbjct: 176 ILRKGAVTKQKIQEILK 192


>gi|312796685|ref|YP_004029607.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI
           454]
 gi|312168460|emb|CBW75463.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia rhizoxinica HKI
           454]
          Length = 209

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +D G  +A+PT++ Y LA    +  A+ +L  I+       L   V D+S
Sbjct: 14  PRLIKQAAQIIDGGGVVALPTDSSYALACHLDDKAAVEQLRRIRGLNERRHLSLMVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELATFAMVDNRQYRLIKAVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   +    G     N    + + + K++ L+IDGG       ST++++  + 
Sbjct: 133 LEALGQPVIASTLILPGDDEPLNEPEAIRAQLEKQLDLVIDGGACAA-EPSTVIDLSGDA 191

Query: 188 KVRILRPGGLEIE 200
            V ++R G   +E
Sbjct: 192 PV-LVRVGRGPLE 203


>gi|225872631|ref|YP_002754088.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225793984|gb|ACO34074.1| Sua5/YciO/YrdC/YwlC family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 210

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + ++     + +G  + +PT+T YGLAVD  N  A+  +YE+K R    PL   +++ 
Sbjct: 10  EPDRIQYVVSCIRSGKVVGMPTDTFYGLAVDPVNLRAVESIYELKSRQKHKPLSLLIANP 69

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
               + A  VD     LA+ FWPGPLT+++   + + +   STAN      RVP     +
Sbjct: 70  GQAYELAREVDNHFDRLAERFWPGPLTVIV--KAGSRLPLRSTANTGNVALRVPDAEIPR 127

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ- 184
            ++E  G P+   SAN       T    +    + + IPLI+DGG +   L +TIV++  
Sbjct: 128 AVVEALGLPITATSANLQNAAECTYASCV-RDQLGERIPLIVDGGPTPRSLPTTIVDLSA 186

Query: 185 CEKKVRILRPGGLEIETLKRAI 206
              + +ILR G +    +  A+
Sbjct: 187 GGGQWQILREGAIPTYAIALAL 208


>gi|229819785|ref|YP_002881311.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM
           12333]
 gi|229565698|gb|ACQ79549.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM
           12333]
          Length = 338

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 9/224 (4%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M ++  TD +    +L  A E +  G  I +PT+TVYG+A D+ +  A+  L   K R  
Sbjct: 1   MTLLDCTDPDNREKSLDAAVEAVTHGGLIVLPTDTVYGIAADAFDKDAVAALLAAKGRGR 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P    V D S +   A+  P  +  L + FWPG LT+++    +       T    T 
Sbjct: 61  QKPPPVLVGDHSTLDGLATDVPEVVRTLIERFWPGALTIIVRAQPSLTWDLGYT--RGTV 118

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       +     PLA  SANR+G+ + T         +   + + +DGG ++ G
Sbjct: 119 ALRMPDDEIALDVLRRTGPLATSSANRTGRPAATTAA-EAQEQLGARVGVYLDGGPARGG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219
             STI++      + I+R G L +E L       L    ++ +T
Sbjct: 178 EASTIIDATG-PTLSIVREGALSVEVLGEVAPELLPPPPEDETT 220


>gi|320106655|ref|YP_004182245.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
 gi|319925176|gb|ADV82251.1| Sua5/YciO/YrdC/YwlC family protein [Terriglobus saanensis SP1PR4]
          Length = 214

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   ++     L++G+  AIPT+T YGLAVD  N  A+ ++YE+K R    PL   ++D 
Sbjct: 14  EPELVQHVVRCLESGMVAAIPTDTFYGLAVDPVNLRAVEQIYELKGRAKHKPLSLLIADT 73

Query: 68  SMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +   + A     +   LA+ FWPGPLT+++   + + +    TA+      RVP     +
Sbjct: 74  AHAYELARDVDTAFDKLAEKFWPGPLTIIV--KAGSRLPLRVTAHTGNVALRVPEAAIPR 131

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            +++  G P+   SAN  G     N    +   +  +IPLI+DGG +   + +TIV++  
Sbjct: 132 AIVKKLGLPITATSANLRGLPEC-NYAACVRDQLGGQIPLIVDGGPTARSIATTIVDLSG 190

Query: 186 EK-KVRILRPGGLEIETLKRAI 206
                 ILR G +    +  A+
Sbjct: 191 GGNSWMILREGAIPTHEIALAL 212


>gi|330996846|ref|ZP_08320715.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329572289|gb|EGG53948.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 202

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 8/195 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +   + KA + L  G  I  PT+TVY +  D+ N  A+ R+  +K   P  + L     D
Sbjct: 11  NPREMVKALKMLRDGELIIYPTDTVYAIGCDALNVRAVERICALKGVNPQKSNLSIICYD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +S + ++A V   +  L K   PGP T +L   S     P    N K    RVP     +
Sbjct: 71  LSNISEYAQVSNAAFKLLKKNLPGPFTFILPTSSRL---PKIYKNKKEVGIRVPDNSIAR 127

Query: 126 KLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L+E  G+PL   S +   +I   +    ++       + L+IDGG       ST+V+  
Sbjct: 128 GLVEGLGNPLLTMSVHDEDEIIEYSTDPELIHEKYEGRVALVIDGGYGGS-EASTVVDC- 185

Query: 185 CEKKVRILRPGGLEI 199
            +    I+R G  E+
Sbjct: 186 VDDAFEIVRQGKGEL 200


>gi|291298831|ref|YP_003510109.1| Sua5/YciO/YrdC/YwlC family protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568051|gb|ADD41016.1| Sua5/YciO/YrdC/YwlC family protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 217

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 5/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +A++ A   +++G  + +PT+TVYGL  D+    A+  L   KKR         V    
Sbjct: 13  DSAIKAAVSAVESGDLVVMPTDTVYGLGADAFKSYAVDALLRTKKRGRDMVPPVLVGSRK 72

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +     SV  +   L   FWPGPLT+V+    T  +      +  T   R+P       
Sbjct: 73  ALDGLTISVPSMIKDLVAAFWPGPLTVVMHYSPT--LAWDLGDDDGTVAVRMPLHPVALE 130

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN++GQ             +   + + ++ G S     STIV+   + 
Sbjct: 131 VLAETGPMAVSSANKTGQPPAATATDA-KEQLGYAVQVYLEAGPSPDTKPSTIVDCTGDV 189

Query: 188 KVRILRPGGLEIETLKRA 205
             ++LR G L +E L+  
Sbjct: 190 P-KVLRQGALSLERLREV 206


>gi|126666027|ref|ZP_01737007.1| putative translation factor (SUA5) [Marinobacter sp. ELB17]
 gi|126629349|gb|EAZ99966.1| putative translation factor (SUA5) [Marinobacter sp. ELB17]
          Length = 206

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + L  G  IA PT++ Y L     + +A  R+  I+K    +       D+S
Sbjct: 14  KRLINQAVDILRKGGVIAYPTDSGYALGCHLGDKSASDRIKRIRKLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  + K + PG  T +LD  S      L     +T   RVP       L
Sbjct: 74  DIGTYAKVDNTTYRMLKTYTPGAYTFILDATSEVP-RRLLHPKRRTIGVRVPDNAVVHAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G P+   +    G+         +  ++  E+ LIIDGG   +   +T+VN     
Sbjct: 133 LGEFGEPIMSSTLILPGETEPMTDPEDIRDALEHELDLIIDGGFCGM-EATTVVNFTSGS 191

Query: 188 KVRILRPGG 196
            V      G
Sbjct: 192 PVVTRVGKG 200


>gi|270262116|ref|ZP_06190388.1| hypothetical protein SOD_b03230 [Serratia odorifera 4Rx13]
 gi|270043992|gb|EFA17084.1| hypothetical protein SOD_b03230 [Serratia odorifera 4Rx13]
          Length = 206

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + L  G  I  PT++ Y L       +A+ R+  I++    +       D+S
Sbjct: 14  PRLINQAVDVLRKGGVIVYPTDSGYALGCKLEEKSAMERICRIRQLDGNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   +    G     +    +S  + K++ L+I GG       +T++++  E 
Sbjct: 133 LEVLNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVDLVIHGGFLGQ-QPTTVIDLT-ES 190

Query: 188 KVRILRPGGLEI 199
              ++R G  +I
Sbjct: 191 APEVVREGAGDI 202


>gi|89094112|ref|ZP_01167055.1| hypothetical protein MED92_16255 [Oceanospirillum sp. MED92]
 gi|89081587|gb|EAR60816.1| hypothetical protein MED92_16255 [Oceanospirillum sp. MED92]
          Length = 205

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 8/205 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     + +A E ++ G  +  PT+  Y L     + +A+ ++  I++    
Sbjct: 3   QFFQIHPENPQQRLINQAVEIINRGGVVIYPTDCAYALGCHLGDKSALEKIKRIRQLDDK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD     L K   PG  T +L   S      L     +T   
Sbjct: 63  HNFTLVCRDLSEISTYAKVDNSCYRLLKSHTPGAYTFILKATSEVP-RRLLHPKRRTIGI 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       L E  G P+   S    G+       + +   +  ++ L+IDGG    G+
Sbjct: 122 RIPDNPIALALTEALGEPIMSTSLIMPGEEMPLMDPYEMRELLQHQVDLVIDGGYC--GM 179

Query: 177 ESTIVNVQCEKKVRILRPGGLEIET 201
           E+T V    E+   I+R G  ++  
Sbjct: 180 EATSVINLVEETPEIIREGAGDVSD 204


>gi|258621658|ref|ZP_05716689.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258626397|ref|ZP_05721244.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|262171790|ref|ZP_06039468.1| YrdC family protein [Vibrio mimicus MB-451]
 gi|258581449|gb|EEW06351.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258585889|gb|EEW10607.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|261892866|gb|EEY38852.1| YrdC family protein [Vibrio mimicus MB-451]
          Length = 206

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y +     N   + R+ +I++    +       D+S
Sbjct: 14  TRLINQAVAIIRNGGVVVYPTDSGYAVGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELSLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +  S+   + +I++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190

Query: 188 KVRILRPGG 196
           ++ + R G 
Sbjct: 191 EIVVARVGA 199


>gi|306825265|ref|ZP_07458607.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304432701|gb|EFM35675.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 200

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 2   MDRIRQELEKGRAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPREKALNLNVASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLSTVGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|183603392|ref|ZP_02711993.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569699|gb|EDT90227.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC1087-00]
          Length = 200

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 2   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PG LT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPTYLQKLVETFLPGSLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|117619033|ref|YP_857424.1| Sua5/YciO/YrdC/YwlC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560440|gb|ABK37388.1| Sua5/YciO/YrdC/YwlC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 229

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A + +  G  I  PT++ Y L     +  A+ R+  I++    +       D+S
Sbjct: 37  ARLISQAVQIIQNGGVIVYPTDSGYALGCQMGDKGALERICRIRRIDPNHDFTLVCRDLS 96

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP     + L
Sbjct: 97  EISTYAKVDNTAFRLIKNNTPGPYTFIFKATKEVP-RRLMNEKKKTIGIRVPDNKIAQAL 155

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +               +   + K++ L+++GG       +T+V+   ++
Sbjct: 156 LEALGEPLLSTTLILPESDMAEFDPEEIFDKLGKQLDLVVNGGYLGE-QPTTVVDFSDDE 214

Query: 188 KVRILRPGG 196
            V   R  G
Sbjct: 215 PVLRRRGAG 223


>gi|294787792|ref|ZP_06753036.1| Sua5/YciO/YrdC/YwlC family protein [Simonsiella muelleri ATCC
           29453]
 gi|294484085|gb|EFG31768.1| Sua5/YciO/YrdC/YwlC family protein [Simonsiella muelleri ATCC
           29453]
          Length = 206

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 9/199 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q ++I   N     +++A E ++ G  +  PT++ Y L     +  A+ R+  I++    
Sbjct: 3   QFLTIHPDNPQDRLIKQAVETINKGGVVIYPTDSCYALGCRLGDKAAMERILAIRQMNLK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +      +D+S +  +A VD       K   PG  T +L          L     KT   
Sbjct: 63  HHFTLMCADLSELGTYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L++  G P+   +             + +   +   + LIIDGG      
Sbjct: 122 RVPDNQIALALLKELGEPMLSCTLILPEDNEPLTDPYEIRDRLDYAVDLIIDGGWCGT-E 180

Query: 177 ESTIVNVQCEKKVRILRPG 195
            +T++++     V ++R G
Sbjct: 181 PTTVIDMTDG--VELVRQG 197


>gi|212288267|sp|Q6LLJ9|RIMN_PHOPR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 185

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L++    L +G  IA PTE V+G+  D  NP A+ +L  +K+RP    LI   ++   
Sbjct: 2   DNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLALKQRPIEKGLILIAANYQQ 61

Query: 70  VKKH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +   A +  L        WPGP+T V+ +    DI PL T    +   RV      +
Sbjct: 62  LQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPVKK--DISPLLTGKFTSIAVRVSDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G P+   SAN +G      V  +  + + + +  I++G        + I +   
Sbjct: 120 KLCHQFGKPITSTSANLTGLPPCKTVTEV-QNQLGEHLSAILEGETGGRENPTEIRDAFS 178

Query: 186 EKKVR 190
           +  +R
Sbjct: 179 DTVLR 183


>gi|332290736|ref|YP_004429345.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332168822|gb|AEE18077.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 205

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 9/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   L++  + L  G  I  P++TVY L  D  N  A+ R+ +IK              D
Sbjct: 13  NPRDLQEIVKILKNGGLIIYPSDTVYALGCDITNTKALERVAQIKGVKLAKANFSFVCED 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S +  +   +D  +  + K   PGP T +L   +     P      K    RVP    T
Sbjct: 73  LSNLSDYVKQIDTQTFKILKRALPGPYTFILPGNNNL---PSVFKKKKEVGIRVPDNEIT 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + ++   G+P+   S     + I  T    ++       + +I+DGG     + ST++++
Sbjct: 130 RAIVRALGNPIISTSIYDEDEVIEYTTDPELIFEKWQNRVDVIVDGGYGG-NIPSTVIDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
             ++ + ++R G    E
Sbjct: 189 TGDEPI-LIREGKGSPE 204


>gi|251782313|ref|YP_002996615.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390942|dbj|BAH81401.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 208

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 6/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ + +    +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D  
Sbjct: 10  SSIMERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFD 69

Query: 69  MVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +   +   P  L  L + F PGPLT++L   +   +     + L T  FR+P       
Sbjct: 70  SILAFSKEQPTYLEKLYQAFLPGPLTVILK--ANDHVPHWINSGLATVGFRLPSHPITAA 127

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL  PSAN SG+ S      I+     + I    D  ++  G +STI+++  E 
Sbjct: 128 LIQKTGPLIGPSANLSGKPSGKVFDQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGES 185

Query: 188 KVRILRPGGLEIETL 202
            V ILR G +  E L
Sbjct: 186 PV-ILRQGAITKEEL 199


>gi|86132278|ref|ZP_01050873.1| YrdC protein [Dokdonia donghaensis MED134]
 gi|85817197|gb|EAQ38380.1| YrdC protein [Dokdonia donghaensis MED134]
          Length = 205

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 9/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   L++  + L AG  I  P++TVY L  D  N  A+ ++ +IK              D
Sbjct: 13  NPKDLKQIVKILKAGGLIIYPSDTVYALGCDITNAKALEKVAQIKGVKLAKANFSFVCED 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S +  +   +D  +  + K   PGP T +L   +     P S    K    RVP    T
Sbjct: 73  LSNLSDYVRQIDTKTFKILKRALPGPYTFILPGNNNL---PSSFKKKKEVGIRVPDNEIT 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + ++   G+P+   S     + I  T    ++       + +I+DGG     + ST++++
Sbjct: 130 RAIVRALGNPIVSTSIYDEDEVIEYTTDPELIFEKWQNRVDVIVDGGYGG-NIPSTVIDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
             ++ + ++R G    E
Sbjct: 189 TGDEPI-LIREGKGSPE 204


>gi|323493845|ref|ZP_08098963.1| Sua5/YciO/YrdC family protein [Vibrio brasiliensis LMG 20546]
 gi|323311979|gb|EGA65125.1| Sua5/YciO/YrdC family protein [Vibrio brasiliensis LMG 20546]
          Length = 185

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   KA   L  G  IA PTE V+G+  D  +P AI +L ++K+RP    LI   +    
Sbjct: 2   DNFDKALSALRNGEVIAYPTEGVFGVGCDPDSPQAIEKLLKLKQRPIEKGLILIAASYQQ 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     LS   L   +  WPGP+T V+    +  +    +    +   RV      +
Sbjct: 62  LLPYIDESQLSAEQLQQVQKSWPGPVTWVMPC--SDKVSDWVSGQYDSIAVRVSDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           K+   +G PL   SAN SGQ      + +    +  ++  +++G        S I + + 
Sbjct: 120 KMCNAFGKPLTSTSANLSGQPPCMTTEEVY-QQLGSQLVAVLEGQTGGREKPSEIRDAKT 178

Query: 186 EKKVR 190
            + +R
Sbjct: 179 SQVLR 183


>gi|322515423|ref|ZP_08068414.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus ureae ATCC
           25976]
 gi|322118546|gb|EFX90779.1| Sua5/YciO/YrdC/YwlC family protein [Actinobacillus ureae ATCC
           25976]
          Length = 205

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 76/192 (39%), Gaps = 5/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E +  G  I  PT++ Y L        AI R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAIDRIVAIRKLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   S  L K   P P T +L   +T D+        KT   RVP       L
Sbjct: 74  ELSTYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S          +    +   +   + LII GG   +G E T V    E 
Sbjct: 132 IAELGEPILSCSLMLPDTEITESDPDEIREHLEHRVDLIIHGGY--LGQEPTTVIDLTED 189

Query: 188 KVRILRPGGLEI 199
             RI+R G  +I
Sbjct: 190 SPRIIREGSGDI 201


>gi|294138840|ref|YP_003554818.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12]
 gi|293325309|dbj|BAJ00040.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12]
          Length = 185

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E ++ G  IA PTE VYGL  D  N  AI +L  +K+RP    LI   SD S +  +   
Sbjct: 11  EVIENGGVIAYPTEAVYGLGCDPDNDVAIEKLLALKQRPWQKGLILVASDYSQIAPYLDD 70

Query: 77  DPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132
             L+   LA  F  WPGP T ++ + S  DI  L   N  +   RV      + +    G
Sbjct: 71  TQLTEKQLAFAFSKWPGPFTFIMPIRS--DISKLLCGNFNSLAVRVSAHPGIQAICNKLG 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +GQ    +V  +        I  ++ G +      STI++    K +R
Sbjct: 129 KPLVSTSANITGQQPAMSVDEVTM-QFEGVIAGVVTGKLGCEANPSTIIDALSGKVLR 185


>gi|261867922|ref|YP_003255844.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413254|gb|ACX82625.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 207

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 7/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            ++ V   +  L K   PG  T +L          L T+  KT   RVP       L++ 
Sbjct: 77  TYSLVTNSAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALDLLKA 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G P+   S     +  +T +    +   +  ++ LII GG   +G E +T+V++  +  
Sbjct: 136 LGEPILSCSLMLPNEEHLTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTGDTP 193

Query: 189 VRILRPG 195
           V ILR G
Sbjct: 194 V-ILREG 199


>gi|317048305|ref|YP_004115953.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. At-9b]
 gi|316949922|gb|ADU69397.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. At-9b]
          Length = 206

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A ++L+ G  I  PT++ Y L        A+ R+  I++    +       D+S
Sbjct: 14  PRLVNQAVDYLNKGGVIVYPTDSGYALGCRLEEKNAMERICRIRQLDGHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD  +  + K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYSQVDNSAFRIIKNNTPGSYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +  SI K + LIIDGG +     +T+V++  + 
Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEEIQHSIGKLVDLIIDGG-TLGQQPTTVVDLTSDA 191

Query: 188 KVRILRPGGLEI 199
            + I+R G  +I
Sbjct: 192 PI-IVREGVGDI 202


>gi|212710704|ref|ZP_03318832.1| hypothetical protein PROVALCAL_01771 [Providencia alcalifaciens DSM
           30120]
 gi|212686401|gb|EEB45929.1| hypothetical protein PROVALCAL_01771 [Providencia alcalifaciens DSM
           30120]
          Length = 206

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 5/183 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + ++ E L+ G  +  PT++ Y +        A+ R+  I+K  + +       D+S
Sbjct: 14  ARLISQSVEILNKGGVVVYPTDSGYAIGCRLEEKNALERICRIRKLDSNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSNYAHVDNTVFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIARDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           +E  G PL   S    G     +    +   + K++ L+I GG   IG   +T+++   +
Sbjct: 133 LEAVGEPLMSTSLILPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTVIDFTDD 190

Query: 187 KKV 189
             V
Sbjct: 191 TPV 193


>gi|325280506|ref|YP_004253048.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324312315|gb|ADY32868.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 202

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           ++  + K  E L AG  I  PT+T+Y +  D  N  A++R+ ++K  +P          D
Sbjct: 11  NTRDILKVVEVLKAGGIIIYPTDTIYAIGCDINNVKAVQRVCQLKNIKPEKANFSMICRD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +S +  +A V+     + K   PGP T VL   +T  +  +     KT   R+P      
Sbjct: 71  LSNIAAYAKVNNEVFKVMKRNLPGPFTFVLP--ATNKLPNVMINRRKTIGIRIPDNYIVM 128

Query: 126 KLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            ++E  G+PL   S     + +       ++     K + L+IDGG  +  + ST+V+  
Sbjct: 129 SIVEELGNPLLTTSVKAEDEVVEYMTDPELIHEKYEKLVDLVIDGGFGQ-NVASTVVDCT 187

Query: 185 CEKKVRILRPG 195
            + ++ ++R G
Sbjct: 188 -DDRIEVIRQG 197


>gi|312865283|ref|ZP_07725511.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus downei F0415]
 gi|311099394|gb|EFQ57610.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus downei F0415]
          Length = 199

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 110/209 (52%), Gaps = 12/209 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D  AL+     L  G  + +PTETVYGL   + + +A++++Y +K RPA   +  +V+
Sbjct: 1   MADLEALK---ATLAEGGAVVLPTETVYGLFAKALDESAVKKVYALKGRPADKAMNLNVA 57

Query: 66  DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
               +  ++   P  L  L + F+PGPLT++L   +   +     A L +  FR+P    
Sbjct: 58  SYQDILDYSQDQPSYLEKLYQAFFPGPLTIIL--KANDKVPGWVNAGLDSVGFRLPQHPV 115

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           T++LI  +G PL  PSAN SGQ S     +I++    K   L  DG I   GL+STI+++
Sbjct: 116 TQELIAQFG-PLVGPSANISGQASGKVFANIMADFDQKVTGLADDGAI--QGLDSTILDL 172

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEY 212
              K  +ILR G +  E L   +  EL+Y
Sbjct: 173 SGTKP-KILRQGAISKEDLLEVV-PELKY 199


>gi|289167968|ref|YP_003446237.1| hypothetical protein smi_1125 [Streptococcus mitis B6]
 gi|288907535|emb|CBJ22372.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 209

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +   +  +Y++K+RP    L  +++ +  + 
Sbjct: 11  MDRIRQELENGGAVVLPTETVYGLFAKALDEKVVNHVYQLKRRPRDKALNLNIASLEDIL 70

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 71  NFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 128

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG+ S      IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 129 ETG-PLIGPSANISGRASGVTFAQILEDFDQEVLGLEDDSFLT--GQDSTILDLSGDK-V 184

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 185 KILRQGAIKREDILARL 201


>gi|261210663|ref|ZP_05924955.1| YrdC family protein [Vibrio sp. RC341]
 gi|262402465|ref|ZP_06079026.1| YrdC family protein [Vibrio sp. RC586]
 gi|260840148|gb|EEX66728.1| YrdC family protein [Vibrio sp. RC341]
 gi|262351247|gb|EEZ00380.1| YrdC family protein [Vibrio sp. RC586]
          Length = 206

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y +     N   + R+ +I++    +       D+S
Sbjct: 14  TRLINQAVAIIRNGGVVVYPTDSGYAVGCQLENKHGMERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  EISLYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNEKRKTIGIRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +  S+   + +I++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVILNGGYLGQ-QPTTVIDF-SDD 190

Query: 188 KVRILRPGG 196
           ++ + R G 
Sbjct: 191 EIVVARVGA 199


>gi|225435305|ref|XP_002285123.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297746251|emb|CBI16307.3| unnamed protein product [Vitis vinifera]
          Length = 272

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 104/203 (51%), Gaps = 5/203 (2%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +   TD++A  +A E + AG  IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL  
Sbjct: 59  VRPATDAHA-EEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAI 117

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            V D+  +++ A  D L   L     PGP+T+VL     + I       L +   RVP C
Sbjct: 118 CVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRRGELSIIEKSLNPGLDSIGVRVPDC 177

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STI 180
            F + +       LA+ SAN SGQ S   +K     ++ +    + DGG+   G   ST+
Sbjct: 178 DFIRVIAHGSETALALTSANLSGQPSSVCIKD--FENLWEHCAYVYDGGVLPSGRAGSTV 235

Query: 181 VNVQCEKKVRILRPGGLEIETLK 203
           V++    K +ILRPG    ET+ 
Sbjct: 236 VDLSRLGKYKILRPGSAMEETVA 258


>gi|300716950|ref|YP_003741753.1| hypothetical protein [Erwinia billingiae Eb661]
 gi|299062786|emb|CAX59906.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 206

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 6/189 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L+ G  I  PT++ Y L     + +A+ R+ +I+K    +       D+S
Sbjct: 14  PRLIKQAVELLNKGSVIVYPTDSGYALGCKLEDKSAMERICKIRKLDGNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAHVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           +E    P+   S    G     +    +  SI K + LII GG   +G   +T++++  E
Sbjct: 133 LEALNEPMMSTSLMLPGNDFTESDPEAIQDSIGKLVDLIIHGGY--LGQHPTTVIDLT-E 189

Query: 187 KKVRILRPG 195
               ++R G
Sbjct: 190 NTPEVVREG 198


>gi|298370013|ref|ZP_06981329.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281473|gb|EFI22962.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 242

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+ 
Sbjct: 50  ERLVKQAADIIRNGGVVVYPTDSCYALGCKLGDKAAMERILAIRKIDLKHHLTLMCADLR 109

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD       K   PG  T +L          L     KT   RVP       L
Sbjct: 110 ELGTYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNTIALSL 168

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 169 LQELGEPLLSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 227

Query: 188 KVRILRPG 195
            +  +R G
Sbjct: 228 VL--IREG 233


>gi|219850818|ref|YP_002465250.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris
           E1-9c]
 gi|219545077|gb|ACL15527.1| Sua5/YciO/YrdC/YwlC family protein [Methanosphaerula palustris
           E1-9c]
          Length = 193

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 12/187 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +++A + L     +  PT+T+YGL  D+ +  A+  +YE K RP   P+   VSD  M
Sbjct: 2   DRIKEAVKVLHRDGLVVYPTDTIYGLGADALSDEAVAAVYEAKHRPLAKPISIAVSDRDM 61

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   A V P++    + F PGP T+VL   +   +    T        R+P      +LI
Sbjct: 62  LAALAVVTPVAEQFIEAFLPGPFTVVL--KAKKVLPETLTGGTGMIGLRIPDHPIALELI 119

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +  P+   SAN SG      +  +          L+ID G    GL ST+V++     
Sbjct: 120 REFDGPITATSANLSGGKDPVTINDV-----HVRYDLLIDAGR-LTGLPSTVVDLVD--- 170

Query: 189 VRILRPG 195
           +R++RPG
Sbjct: 171 MRMIRPG 177


>gi|293365354|ref|ZP_06612071.1| Sua5/YciO/YrdC family protein [Streptococcus oralis ATCC 35037]
 gi|322374349|ref|ZP_08048863.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C300]
 gi|291316804|gb|EFE57240.1| Sua5/YciO/YrdC family protein [Streptococcus oralis ATCC 35037]
 gi|321279849|gb|EFX56888.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C300]
          Length = 200

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 2   MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVAFLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175

Query: 190 RILRPGGLEIETL 202
           +ILR G ++ E +
Sbjct: 176 KILRQGAIKREDI 188


>gi|146300671|ref|YP_001195262.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae
           UW101]
 gi|146155089|gb|ABQ05943.1| translation factor SUA5 [Flavobacterium johnsoniae UW101]
          Length = 206

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 13/200 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK---RPAMNPLICHVS 65
             A+ K  + L  G  +  PT+TVYGL  D  N  A+ ++ +IK      A    ICH  
Sbjct: 14  EAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVKLEKANFSFICH-- 71

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
           D+S +  +   +D  +  + K   PGP T +L   +     P       T   RVP    
Sbjct: 72  DLSNLSDYVRQIDTSTFKILKRALPGPYTFILPGNNNL---PKEFKKKTTVGIRVPDNNI 128

Query: 124 TKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             +++   G+P+   S       I  T    ++       + ++IDGG     + STI++
Sbjct: 129 VLEIVRQLGNPIVSTSIRDEDDVIEYTTDPELIFEKWQNLVDMVIDGGYGD-NVGSTIID 187

Query: 183 VQCEKKVRILRPGGLEIETL 202
           +   + + ++R G  +I+ L
Sbjct: 188 LSEHEPI-VVREGKGDIDIL 206


>gi|318605611|emb|CBY27109.1| ycio family [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 206

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ + L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S
Sbjct: 14  PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +           L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNPAFRLIKNNTPGNYTFIFKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G     +    +   + K++ LII GG S     +T++++  + 
Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 SPEVIRVGA 199


>gi|307703896|ref|ZP_07640837.1| yrdC domain protein [Streptococcus oralis ATCC 35037]
 gi|307622731|gb|EFO01727.1| yrdC domain protein [Streptococcus oralis ATCC 35037]
          Length = 199

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 1   MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVAFLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 61  HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 119 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 174

Query: 190 RILRPGGLEIETL 202
           +ILR G ++ E +
Sbjct: 175 KILRQGAIKREDI 187


>gi|308047752|ref|YP_003911318.1| translation factor SUA5 [Ferrimonas balearica DSM 9799]
 gi|307629942|gb|ADN74244.1| translation factor SUA5 [Ferrimonas balearica DSM 9799]
          Length = 187

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    +  G  +A PTE V+GL  D  N  A+ RL +IK+RP    LI   ++   + 
Sbjct: 7   VSEGAALMAKGGVVAYPTEAVFGLGCDPSNEEAVSRLLDIKQRPVEKGLILIAANYGQLL 66

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
              +   L     +     WPGP T V+    +  +    T    T   RV        L
Sbjct: 67  PFVNDSALPDARREAVMARWPGPTTWVMPAQPS--VPGWVTGQFDTLAVRVTDHAIAADL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G P+   SAN +GQ    +   +L++ +   +  ++ G +      S I++   ++
Sbjct: 125 CRAFGGPVVSTSANLTGQPPCRSADEVLAA-LGDRVDGVVMGDVGGRKDPSMILDAMTDQ 183

Query: 188 KVRI 191
             R 
Sbjct: 184 VFRT 187


>gi|325578257|ref|ZP_08148392.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159993|gb|EGC72122.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC
           33392]
          Length = 207

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 7/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A+V  ++  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYATVSNVAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           ++  G P+   S        +T +    +   + +++ LII GG   +G E +T+V++  
Sbjct: 133 LKALGEPILSCSLMLPDNEHMTYSDPEEIRECLERQVDLIIHGGY--LGQEPTTVVDLTE 190

Query: 186 EKKVRILRPGGLEIE 200
           E  V ILR G    +
Sbjct: 191 ESPV-ILREGSGSTD 204


>gi|52841673|ref|YP_095472.1| translation factor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628784|gb|AAU27525.1| translation factor [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 221

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LRKA   ++ G  I  PT++ Y L     N +A+ R+  +++    + +     D+S
Sbjct: 29  ARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLS 88

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            +  +A V      L K F PG  T +L+  +T ++  L      +T   RVP    T  
Sbjct: 89  QLGTYAKVSNPIFRLLKAFTPGSYTFILN--ATHEVPRLMLHPKRRTLGLRVPDNTITLS 146

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    PL   +    G  +  +    +   +  +I LIIDGG       +T+V++  +
Sbjct: 147 LLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGH-EPTTVVDLTGD 205

Query: 187 KKVRILRPGGLEIETLK 203
             + I+R G  + E  K
Sbjct: 206 YPI-IIREGKGDPEPFK 221


>gi|308274797|emb|CBX31396.1| Uncharacterized protein yciO [uncultured Desulfobacterium sp.]
          Length = 201

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  + L     IA PT+T YG+  D  N  AI ++Y +K+R   +P     S + 
Sbjct: 12  KRLISKVIDILKKDGVIAYPTDTYYGIGCDIMNKKAIEKIYLLKQREKNSPFSFMCSGLK 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   +    K   PGP T VL+   +  +  +   N KTA  RVP       L
Sbjct: 72  NISDYAKVSNYAYKTMKRLLPGPYTFVLE--GSKLVPKIMLTNRKTAGIRVPNNIICLAL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G+P+   SA         N   ++       I L+IDGG    G  S++V++  + 
Sbjct: 130 VEELGNPIITTSATMPDGTVFDN-PSLIHEYYKTRINLVIDGGPVP-GQPSSVVSLINDI 187

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 188 P-EVIRQG 194


>gi|294783757|ref|ZP_06749081.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480635|gb|EFG28412.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 217

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I  I+D      A E L  G  I  PT+TVYGLA    N  +I  +Y  K R   +PLI 
Sbjct: 10  ISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLIA 68

Query: 63  HVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            +S +  V++ A++   +      LA  FWPG LT++L       I  +  +   T   R
Sbjct: 69  LLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILKRKEH--IPSIMVSGGDTIGVR 126

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      K+I+  G  LA  SAN SG+ +  +    LS +I   + +++DGG  K+G  
Sbjct: 127 IPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGEA 185

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           STI+++  +   +ILR G +  + + + I 
Sbjct: 186 STIIDLTSDVP-KILRNGAISTDEITKIIG 214


>gi|148358974|ref|YP_001250181.1| translation factor [Legionella pneumophila str. Corby]
 gi|296107023|ref|YP_003618723.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
 gi|148280747|gb|ABQ54835.1| translation factor [Legionella pneumophila str. Corby]
 gi|295648924|gb|ADG24771.1| putative translation factor [Legionella pneumophila 2300/99 Alcoy]
          Length = 206

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LRKA   ++ G  I  PT++ Y L     N +A+ R+  +++    + +     D+S
Sbjct: 14  ARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            +  +A V      L K F PG  T +L+  +T ++  L      +T   RVP    T  
Sbjct: 74  QLGTYAKVSNPIFRLLKAFTPGSYTFILN--ATHEVPRLMLHPKRRTLGLRVPDNTITLS 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    PL   +    G  +  +    +   +  +I LIIDGG       +T+V++  +
Sbjct: 132 LLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGH-EPTTVVDLTGD 190

Query: 187 KKVRILRPGGLEIETLK 203
             V I+R G  + E  +
Sbjct: 191 YPV-IIREGKGDPEPFR 206


>gi|332075636|gb|EGI86104.1| yrdC domain protein [Streptococcus pneumoniae GA17545]
          Length = 199

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 97/192 (50%), Gaps = 6/192 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++ +  + 
Sbjct: 1   MDRIRQELENGRAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P       +  
Sbjct: 61  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  +K V+
Sbjct: 119 VTGPLIGPSANISGQASGVTFNQILKDFDQEVLGLEDDAFLT--GQDSTIIDLSGDK-VK 175

Query: 191 ILRPGGLEIETL 202
           ILR G ++ + +
Sbjct: 176 ILRQGAIKRDDI 187


>gi|332161875|ref|YP_004298452.1| hypothetical protein YE105_C2253 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666105|gb|ADZ42749.1| hypothetical protein YE105_C2253 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860991|emb|CBX71264.1| uncharacterized protein yciO [Yersinia enterocolitica W22703]
          Length = 206

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ + L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S
Sbjct: 14  PRLINQSVDVLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNPAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G     +    +   + K++ LII GG S     +T++++  + 
Sbjct: 133 LDVLGEPLMSTTLMLPGNDFAESDPEEIKEHLGKQVDLIIHGG-SLGQQPTTVIDLT-DS 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 SPEVIRVGA 199


>gi|145641202|ref|ZP_01796782.1| hypothetical protein CGSHiR3021_05354 [Haemophilus influenzae
           R3021]
 gi|145274039|gb|EDK13905.1| hypothetical protein CGSHiR3021_05354 [Haemophilus influenzae
           22.4-21]
 gi|309973339|gb|ADO96540.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
          Length = 207

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 7/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V+  +  L K   PG  T +L          L T+  KT   RVP       L+  
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDLLSA 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G P+   S    G+   T +    +   +  ++ LII GG   +G E +T+V++  E  
Sbjct: 136 LGEPILSCSLMLPGEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTEESP 193

Query: 189 VRILRPGGLE 198
           V ILR G   
Sbjct: 194 V-ILREGSGS 202


>gi|257465550|ref|ZP_05629921.1| hypothetical protein AM202_03495 [Actinobacillus minor 202]
 gi|257451210|gb|EEV25253.1| hypothetical protein AM202_03495 [Actinobacillus minor 202]
          Length = 205

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 5/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +     I  PT++ Y L     N +A+ R+ +I+K P  +      SD+S
Sbjct: 14  PRLINQAVEIIKNDGVIVYPTDSGYALGCAIGNKSAMERIVKIRKLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   +  L K   P P T +L   +T D+        KT   RVP       L
Sbjct: 74  ELSNYAMVSNQAYRLIKNNVPNPYTFILP--ATKDVPRRLLTKRKTIGIRVPQNEIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S     +    +    +   + +++ LII GG       +T++++  + 
Sbjct: 132 ISALGEPILSCSLMLPDEEITQSDPEAIRDLLERQVDLIIHGGY-LGAEPTTVIDLTDDS 190

Query: 188 KVRILRPGGLEI 199
            V I+R G  ++
Sbjct: 191 PV-IIREGSGDL 201


>gi|87306381|ref|ZP_01088528.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Blastopirellula marina DSM 3645]
 gi|87290560|gb|EAQ82447.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Blastopirellula marina DSM 3645]
          Length = 380

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/277 (26%), Positives = 114/277 (41%), Gaps = 17/277 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A + L  G  +A PTETVYG+AV + N  AI RL E K RP   P    +     
Sbjct: 16  DVIHRAVQALAEGQVVAFPTETVYGVAVSALNSGAIDRLMEAKGRPKNQPFALAIRSKDE 75

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLD---------LLSTTDIHPLSTANLKTACFRV 119
           +  +     PL   LA   WPGP+TLVL           L  + I  ++ +       R+
Sbjct: 76  LADYVPQATPLMKRLATRCWPGPVTLVLPCDDPRSVVQSLPASVIPAIAPSGF--VGLRI 133

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++ +     PLA+ SANRSGQ        + + ++   + L++D G  +    S
Sbjct: 134 PSHDLIQEAMRLLPGPLALTSANRSGQPDAVRGSEV-TEALGDALGLVLDCGKCRYSQPS 192

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETS-TPQSPGMLKSHYAPRSQV 236
           T+V V     V ILR G +  + LKR  S   +  C   T  +P +  +++ H A R   
Sbjct: 193 TVVRVVGNH-VEILRSGVVSEKILKRLSSYCVVFVCTGNTCRSPMAEVLMQKHAAERFGC 251

Query: 237 RLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG 273
           +L  +                     A     +   G
Sbjct: 252 KLEELDARGFIVASAGLAAFPGGRAAAEAIKVMGDRG 288


>gi|261381413|ref|ZP_05985986.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria subflava NJ9703]
 gi|284795602|gb|EFC50949.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria subflava NJ9703]
          Length = 206

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  I  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRSGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
            +A VD       K   PG  T +L          L     KT   RVP       L++ 
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNATALALLQE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   +             + +   +   + L+IDGG       +T++++    ++ 
Sbjct: 136 LGEPILSCTLMLPEDEEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGTEL- 193

Query: 191 ILRPGGLEI 199
            +R G  +I
Sbjct: 194 -IRQGKGDI 201


>gi|90416537|ref|ZP_01224468.1| hypothetical protein GB2207_05027 [marine gamma proteobacterium
           HTCC2207]
 gi|90331736|gb|EAS46964.1| hypothetical protein GB2207_05027 [marine gamma proteobacterium
           HTCC2207]
          Length = 204

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + KA   +  G  I  PT++VY +     +  A+ R+  I++    +       D+S
Sbjct: 14  QRLIAKAAAIVRKGGVIVYPTDSVYAIGCHIGDKQAMDRIRSIRQLDKNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +  +A VD  +    K   PGP T +L   S      L     KT   RVP     + L
Sbjct: 74  ELASYARVDNSAFRSLKAQTPGPFTFILPATSEVP-RRLMHPKRKTIGLRVPDSPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   +    G     +  + + +++   + ++IDGG    GLE T V      
Sbjct: 133 LDELGEPMMSVTLILPGDEYPLSDPYDIRAALEAHVDVLIDGGHC--GLEPTTVVDMTGP 190

Query: 188 KVRILRPG 195
              + R G
Sbjct: 191 VPEVTRQG 198


>gi|54294522|ref|YP_126937.1| hypothetical protein lpl1598 [Legionella pneumophila str. Lens]
 gi|53754354|emb|CAH15838.1| hypothetical protein lpl1598 [Legionella pneumophila str. Lens]
 gi|307610146|emb|CBW99692.1| hypothetical protein LPW_14601 [Legionella pneumophila 130b]
          Length = 206

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LRKA   ++ G  I  PT++ Y L     N +A+ R+  +++    + +     D+S
Sbjct: 14  ARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            +  +A V      L K F PG  T +L+  +T ++  L      +T   RVP    T  
Sbjct: 74  QLGTYAKVSNPIFRLLKAFTPGSYTFILN--ATHEVPRLMLHPKRRTLGLRVPDNTITLS 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    PL   +    G  +  +    +   +  +I LIIDGG       +T+V++  +
Sbjct: 132 LLECLEAPLMSTTLILPGAEAPLSEPEAIKDLLGNQIDLIIDGGNCGH-EPTTVVDLTGD 190

Query: 187 KKVRILRPGGLEIETLK 203
             + I+R G  + E  K
Sbjct: 191 YPI-IIREGKGDPEPFK 206


>gi|74317545|ref|YP_315285.1| putative translation factor Sua5 [Thiobacillus denitrificans ATCC
           25259]
 gi|74057040|gb|AAZ97480.1| putative translation factor Sua5 [Thiobacillus denitrificans ATCC
           25259]
          Length = 207

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 4/197 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++  + L  G  I  PT++ Y L     +  A  RL  ++     + L     D+S
Sbjct: 14  PRLIQQTVDILKRGGVIVYPTDSCYALGCHIGDKEAAMRLLSVRGLDTGHDLTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + ++A VD     L K   PGP T +L          L      T   RVP     + L
Sbjct: 74  ELGRYAQVDNAQFRLLKAHTPGPYTFILRGTREVP-RRLLHKRHDTIGLRVPAHPLVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   +    G+         +   +  ++ L+IDGG   +   +T+V++  E 
Sbjct: 133 LEGLGEPILSSTLLLYGEDVPLTEPWEIRERLEHQVDLVIDGGACGL-TPTTVVDLTAET 191

Query: 188 KVRILRPGGLEIETLKR 204
              ++R G  E    + 
Sbjct: 192 PA-VVRYGKGEASAFEA 207


>gi|197285200|ref|YP_002151072.1| dsRNA-binding protein [Proteus mirabilis HI4320]
 gi|227355625|ref|ZP_03840019.1| RNA binding protein [Proteus mirabilis ATCC 29906]
 gi|194682687|emb|CAR42839.1| putative dsRNA-binding protein [Proteus mirabilis HI4320]
 gi|227164232|gb|EEI49125.1| RNA binding protein [Proteus mirabilis ATCC 29906]
          Length = 206

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + ++ + L  G  +  PT++ Y +     N  A+ R+  I++    +       D+S
Sbjct: 14  ARLIEQSADVLRKGGVVIYPTDSGYAIGCCLDNKDAMTRICRIRQLDKHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVP-CGFTKK 126
            +  +A VD +   L K   PG  T +L   +T D+   L     KT   RVP       
Sbjct: 74  EIATYAYVDNVVFRLIKNNTPGNYTFIL--KATKDVPKRLMNDKRKTIGLRVPSNPIALA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +    ++  + K++ L+I GG       +T++++  +
Sbjct: 132 LLENIGEPLMSTSLILPGNDFAESDPEEINDLLGKQVDLVIHGGYLGQ-KPTTVIDLTED 190

Query: 187 KKVRILRPGGLEI 199
             V I+R G  +I
Sbjct: 191 SPV-IVREGMGDI 202


>gi|149910322|ref|ZP_01898965.1| Putative Sua5/YciO/YrdC family protein [Moritella sp. PE36]
 gi|149806570|gb|EDM66538.1| Putative Sua5/YciO/YrdC family protein [Moritella sp. PE36]
          Length = 195

 Score =  169 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 7/191 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +++ +S A+  A   L     IA PTE V+GL  D  N  A++RL  IK+RP    LI  
Sbjct: 8   ITVNNSAAINNAVAALHTQQVIAYPTEAVFGLGCDPMNELAVQRLLTIKQRPVEKGLILI 67

Query: 64  VSDISMVKKHASVDPLSL---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            ++++ +  +  +  LS       K  WPGP T V+   +   +    T    +   RV 
Sbjct: 68  AANLAQLNDYVDLTRLSATQIDKIKQTWPGPATWVMP--AKAQVPKWLTGQFDSIAVRVS 125

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L   +G P+   SAN +G         + +S +   +  I+D  + ++   +T
Sbjct: 126 AHPTVQALCLAFGGPITSTSANLTGLTPCITAAEV-ASQLELLLGAIVDEAVGELAQPTT 184

Query: 180 IVNVQCEKKVR 190
           I +    K  R
Sbjct: 185 ITDALTGKIYR 195


>gi|262066500|ref|ZP_06026112.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379804|gb|EFE87322.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium periodonticum
           ATCC 33693]
          Length = 217

 Score =  169 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I  I+D      A E L  G  I  PT+TVYGLA    N  +I  +Y  K R   +PLI 
Sbjct: 10  ISDISDDKWTELASE-LKKGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLIA 68

Query: 63  HVSDISMVKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            +S +  V++ A++   +  + +     FWPG LT++L       I  +  +   T   R
Sbjct: 69  LLSSVDKVEEVATISDENREILEKLAHTFWPGALTVILKR--KQHIPSIMVSGGDTIGVR 126

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      K+I+  G  LA  SAN SG+ +  +    LS +I   + +++DGG  K+G  
Sbjct: 127 IPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGEA 185

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           STI+++  +   +ILR G +  + + + I 
Sbjct: 186 STIIDLTSDVP-KILRNGAISTDEITKIIG 214


>gi|15902970|ref|NP_358520.1| hypothetical protein spr0926 [Streptococcus pneumoniae R6]
 gi|15458534|gb|AAK99730.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
          Length = 203

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 5   MDRIRQELEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 64

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 65  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 122

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 123 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 178

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 179 KILRQGAIKREDILARL 195


>gi|270292699|ref|ZP_06198910.1| Sua5/YciO/YrdC family protein [Streptococcus sp. M143]
 gi|270278678|gb|EFA24524.1| Sua5/YciO/YrdC family protein [Streptococcus sp. M143]
          Length = 200

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 2   MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNVAYLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI+
Sbjct: 62  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIQ 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFAQILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|145633071|ref|ZP_01788803.1| hypothetical protein CGSHi3655_05899 [Haemophilus influenzae 3655]
 gi|144986297|gb|EDJ92876.1| hypothetical protein CGSHi3655_05899 [Haemophilus influenzae 3655]
          Length = 207

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 7/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V+  +  L K   PG  T +L          L T+  KT   RVP       L+  
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDLLSA 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G P+   S    G+   T +    +   +  +I LII GG   +G E +T+V++  E  
Sbjct: 136 LGEPILSCSLMLPGEEHTTQSDPEEIRDRLEHQIDLIIHGGY--LGQEPTTVVDLTEESP 193

Query: 189 VRILRPGGLE 198
           V ILR G   
Sbjct: 194 V-ILREGSGS 202


>gi|52425092|ref|YP_088229.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307144|gb|AAU37644.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E]
          Length = 207

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 7/192 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  I  PT++ Y L     +  A+ R+ +I+  P  +      SD+S + 
Sbjct: 17  INQAVDILRNGGVIVYPTDSGYALGCMIGDKRAMDRIVQIRHLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            ++ V   +  L K   PG  T +L          L T+  KT   RVP       L+ T
Sbjct: 77  TYSLVTNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALDLLRT 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G P+   S     +  IT +    +   +  ++ LII GG   +G E +T+V++  E  
Sbjct: 136 LGEPILSCSLMLPNEEHITQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTEETP 193

Query: 189 VRILRPGGLEIE 200
           V ILR G   ++
Sbjct: 194 V-ILREGSGPLD 204


>gi|121997386|ref|YP_001002173.1| Sua5/YciO/YrdC/YwlC family protein [Halorhodospira halophila SL1]
 gi|121588791|gb|ABM61371.1| translation factor SUA5 [Halorhodospira halophila SL1]
          Length = 208

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + L  G  IA PT++ Y L     +  A+ R+ EI++    +       D+ 
Sbjct: 14  QRLINQAVQILADGGVIAYPTDSSYALGCRLGDKAALDRIREIRRLDNSHNFTMACKDLK 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A ++  +  L K   PGP T +L   S      L     KT   RVP     + L
Sbjct: 74  DIGTYAKMENYAYRLLKSHTPGPYTFILRATSEVP-RRLQHPKRKTIGIRVPDHPASRAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + T G PL   +    G     N    +   I K I  ++ GG +  G+ ST++++  E 
Sbjct: 133 LNTLGEPLMSVTLQMPGDDMPLNDPEAIQERIGKLIDAVVAGGPTGGGV-STVIDLTGE- 190

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 191 AAEVIREG 198


>gi|269138888|ref|YP_003295589.1| hypothetical protein ETAE_1537 [Edwardsiella tarda EIB202]
 gi|267984549|gb|ACY84378.1| hypothetical protein ETAE_1537 [Edwardsiella tarda EIB202]
 gi|304558874|gb|ADM41538.1| hypothetical protein ETAF_1426 [Edwardsiella tarda FL6-60]
          Length = 206

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++  E L  G  I  PT++ Y L        A+ R+  I++  + +       D+S
Sbjct: 14  PRLIKQVVEVLHKGGVIVYPTDSGYALGCMLEEKNAMERICRIRRIDSNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP     + L
Sbjct: 74  ELSSYAFVDNAAFRLLKNNTPGGYTFILKASKEVP-RRLMSEKRKTIGLRVPSNPIAQDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +          +    +   + K++ L+I GG       +T++++  + 
Sbjct: 133 LAELGEPLMSTTLMLPDSEFAESDPEEIQERLGKQVDLVIHGGYLGQ-QPTTVIDLTDDT 191

Query: 188 KVRILRPGGLEIETLK 203
            + ++R G  + +  +
Sbjct: 192 PL-VVRVGAGDPKPFQ 206


>gi|148988474|ref|ZP_01819921.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|149019618|ref|ZP_01834937.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|147926155|gb|EDK77229.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP6-BS73]
 gi|147930993|gb|EDK81973.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP23-BS72]
          Length = 199

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 1   MDRIRQELENGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 61  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 119 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 174

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 175 KILRQGAIKREDILARL 191


>gi|332307257|ref|YP_004435108.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174586|gb|AEE23840.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 206

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++ACE + +G  +  PT++ Y +     +  A+ ++  I++    +       D+S
Sbjct: 14  TRLIKQACELIHSGEVVVYPTDSGYSIGCHMDDKNALEQICRIRQIGKDHNFTLMCRDMS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + ++A VD  +  + K   PGP T +L          L     +T   RVP       L
Sbjct: 74  ELSEYARVDNAAFRMIKNNTPGPYTFILKATKEVP-KRLQNPKRRTIGIRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   +     +I   +    +   + K++ LII GG       +T+V++   +
Sbjct: 133 LEELGEPMMSTTLILPSEIVAESDPDEIRDKLEKQVGLIIHGGFLGE-QPTTVVDLSEGE 191

Query: 188 KVRILRPG 195
            V I+R G
Sbjct: 192 PV-IIRQG 198


>gi|301156160|emb|CBW15631.1| conserved protein [Haemophilus parainfluenzae T3T1]
          Length = 207

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A+V   +  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYATVSNSAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           ++  G P+   S        +T +    +   + +++ LII GG   +G E +T+V++  
Sbjct: 133 LKALGEPILSCSLMLPDNEHMTYSDPEEIRECLERQVDLIIHGGY--LGQEPTTVVDLTE 190

Query: 186 EKKVRILRPGGLEIE 200
           E  V ILR G    +
Sbjct: 191 ESPV-ILREGSGSTD 204


>gi|256822097|ref|YP_003146060.1| Sua5/YciO/YrdC/YwlC family protein [Kangiella koreensis DSM 16069]
 gi|256795636|gb|ACV26292.1| Sua5/YciO/YrdC/YwlC family protein [Kangiella koreensis DSM 16069]
          Length = 207

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 9/208 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q++ I   N     + +    +  G  +  PT++ Y L     +  A+ R+ +I+     
Sbjct: 3   QLIEIHPENPQPRLVSQIVAIIRNGGVVVYPTDSGYALGCHIGDKKALDRIRQIRDLEKD 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD  +  L K   PGP T +L   +    + L     KT   
Sbjct: 63  HNFTLVCRDLSELAFYARVDNTAFRLIKNNTPGPYTFILRATAEVP-NRLKHPKKKTIGI 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIG 175
           RVP    ++ ++E  G P+   S    GQ        + +   +   +  +IDGG     
Sbjct: 122 RVPDNAISQAILEALGEPMMNTSLILPGQDEGEVLAPYEIFDELNGRVDAVIDGGYCGH- 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203
            E+T+V++       I+R G  +    +
Sbjct: 181 QETTVVDMTSGYP-EIIRYGAGDATVFE 207


>gi|225075954|ref|ZP_03719153.1| hypothetical protein NEIFLAOT_00979 [Neisseria flavescens
           NRL30031/H210]
 gi|224952669|gb|EEG33878.1| hypothetical protein NEIFLAOT_00979 [Neisseria flavescens
           NRL30031/H210]
          Length = 206

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  I  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRSGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
            +A VD       K   PG  T +L          L     KT   RVP       L++ 
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNATALALLQE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   +             + +   +   + L+IDGG       +T++++    ++ 
Sbjct: 136 LGEPILSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGTEL- 193

Query: 191 ILRPGGLEI 199
            +R G  +I
Sbjct: 194 -IRQGKGDI 201


>gi|240948953|ref|ZP_04753309.1| hypothetical protein AM305_08629 [Actinobacillus minor NM305]
 gi|240296768|gb|EER47379.1| hypothetical protein AM305_08629 [Actinobacillus minor NM305]
          Length = 205

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 5/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +     I  PT++ Y L     N +A+ R+ +I+K P  +      SD+S
Sbjct: 14  PRLINQAVEIIKNDGVIIYPTDSGYALGCAIGNKSAMERIVKIRKLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   +  L K   P P T +L   +T D+        KT   RVP       L
Sbjct: 74  ELSNYAMVSNQAYRLIKNNVPNPYTFILP--ATKDVPRRLLTKRKTIGIRVPQNEIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S     +    +    +   + +++ LII GG       +T++++  + 
Sbjct: 132 ISALGEPILSCSLMLPDEEITQSDPEAIRDLLERQVDLIIHGGY-LGAEPTTVIDLTDDS 190

Query: 188 KVRILRPGGLEI 199
            V I+R G  ++
Sbjct: 191 PV-IIREGSGDL 201


>gi|254291086|ref|ZP_04961883.1| Sua5/YciO/YrdC family protein [Vibrio cholerae AM-19226]
 gi|150422931|gb|EDN14881.1| Sua5/YciO/YrdC family protein [Vibrio cholerae AM-19226]
          Length = 188

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A + L  G  IA PTE V+GL  D  N TA+ RL  IK+RP    +I   +  + 
Sbjct: 5   ENLQQAMDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQ 64

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+          WP PLT V+   ++ D          T   RV      +
Sbjct: 65  LRPYVDETQLTAEQLTQVLASWPAPLTWVMP--ASGDTPSWVRGQFDTVAVRVSDHPVVQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G PL   SAN SGQ +    + ++   +  +I ++++G  S     S I + + 
Sbjct: 123 KLCLAFGKPLTSTSANLSGQPACVTQQEVMV-QLGNQIAVVVEGKTSGRHGPSEIRDARS 181

Query: 186 EKKVRILRPG 195
              +++LR G
Sbjct: 182 ---LQVLRQG 188


>gi|237807720|ref|YP_002892160.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187]
 gi|237499981|gb|ACQ92574.1| Sua5/YciO/YrdC/YwlC family protein [Tolumonas auensis DSM 9187]
          Length = 206

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L  G  I  PT++ Y L     + +A+ ++  I++    +      +D+S
Sbjct: 14  TRLISQAVGILRQGGVIIYPTDSGYALGCMMGDKSALEKICRIRQLEDEHNFTLLCNDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A +D  +  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSVYAKIDNTAFRLIKNNTPGAYTFILKATKEVP-RRLMNEKKKTIGIRVPTNNIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    GQ             + K + LIIDGG ++    +T+++   ++
Sbjct: 133 LTELGEPLMSSTLILPGQALAEADPEEFRGQLEKVVDLIIDGG-TQGAQPTTVIDFSDDE 191

Query: 188 KVRILRPGG 196
             +++R G 
Sbjct: 192 P-KVVRFGA 199


>gi|77360238|ref|YP_339813.1| RNA binding protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875149|emb|CAI86370.1| putative RNA binding protein with YrdC/RibB domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 206

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +++A + +  G  +  PT++ Y +  +  N  A  R+  I+     +       D+S
Sbjct: 14  SRLIQQAADIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKHHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RV        L
Sbjct: 74  ELSTYARVDNQTFRLIKNNTPGPYTFIFKGTKEVP-KRLLNDKKKTIGIRVIAHPIACAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G+    +    +   + K + LII GG       +T+V++  E 
Sbjct: 133 LEELGEPLMSCSLILPGEEYTESDPDEIIERLDKHVDLIIHGGYLAE-QATTVVDL-SED 190

Query: 188 KVRILRPGGLEIETLK 203
           +V+ILR G  +    +
Sbjct: 191 EVQILRVGCGDTSPFE 206


>gi|312278144|gb|ADQ62801.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus thermophilus
           ND03]
          Length = 201

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E L+ G  + +PTETVYGL   + +  A+  +YE+K RP    +  +V+    +  
Sbjct: 6   KQLREILNNGEAVVLPTETVYGLFAKALDEKAVNYVYELKNRPRDKAMNLNVASYEDILF 65

Query: 73  HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++   P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++LI+ 
Sbjct: 66  YSKEQPKYLKQLYDAFLPGPLTIIL--KANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL  PSAN+SG+ S  +    + +    ++    D   + +G++STI+++      R
Sbjct: 124 EG-PLIGPSANKSGKESGRHFDD-IRAQFDFQVTGYQDDN-ALLGVDSTILDLSVS-PAR 179

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G +  + L  A+
Sbjct: 180 ILRQGKITKDDLLAAL 195


>gi|52548507|gb|AAU82356.1| putative translation factor [uncultured archaeon GZfos17A3]
          Length = 241

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 11/201 (5%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            I D  + +R A   +  G  +  PTETVYGL  D+ +  A+R +Y+IK+R A  P+   
Sbjct: 19  DINDIEDQIRTATAIIKHGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAATQPISIA 78

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           VS   M+ + A +D   + +     PGP+T++        +  + TA  +    R P   
Sbjct: 79  VSSFEMLHEVADIDSEYVEIIAELLPGPVTILF--KKKDIVPAILTAASEVIGVRFPDNE 136

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLESTIVN 182
               I     P+   SAN SG+   T ++ +     +  E+ +II+GG  K  + ST+V+
Sbjct: 137 IATRIIKETGPITATSANVSGRNPPTCIEEVEVELKLKVELGIIINGGKCKYSMPSTVVD 196

Query: 183 VQCE-------KKVRILRPGG 196
           +           +++I R G 
Sbjct: 197 MSKAGATANEKGEIKIKRKGA 217


>gi|126172293|ref|YP_001048442.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS155]
 gi|152998587|ref|YP_001364268.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185]
 gi|217971252|ref|YP_002356003.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223]
 gi|212288219|sp|A3CYL0|RIMN_SHEB5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288220|sp|A6WHB6|RIMN_SHEB8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|125995498|gb|ABN59573.1| translation factor SUA5 [Shewanella baltica OS155]
 gi|151363205|gb|ABS06205.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185]
 gi|217496387|gb|ACK44580.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223]
          Length = 188

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + +  G  IA PTE VYGL  D  N TAI++L  +K+RP    LI   SD   +  +   
Sbjct: 11  DIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70

Query: 77  DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132
             L +  L   F  WPGP T V+ + +   +         +   RV      + L     
Sbjct: 71  SQLTAEQLEFAFSKWPGPFTFVMPIKAH--VSKYLCGEFDSIAVRVSAHAGVQALCRALN 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +G+        IL +    +I  ++ G + +    STI++ +  K +R
Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQRQPSTIIDARSGKILR 185


>gi|148826193|ref|YP_001290946.1| hypothetical protein CGSHiEE_06050 [Haemophilus influenzae PittEE]
 gi|229846228|ref|ZP_04466340.1| hypothetical protein CGSHi7P49H1_05268 [Haemophilus influenzae
           7P49H1]
 gi|148716353|gb|ABQ98563.1| hypothetical protein CGSHiEE_06050 [Haemophilus influenzae PittEE]
 gi|229811232|gb|EEP46949.1| hypothetical protein CGSHi7P49H1_05268 [Haemophilus influenzae
           7P49H1]
          Length = 207

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 7/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V+  +  L K   PG  T +L          L T+  KT   RVP       L+  
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDLLSA 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G P+   S    G+   T +    +   +  ++ LII GG   +G E +T+V++  E  
Sbjct: 136 LGEPILSCSLMLPGEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTEESP 193

Query: 189 VRILRPGGLE 198
           V ILR G   
Sbjct: 194 V-ILREGSGS 202


>gi|327474247|gb|EGF19654.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK408]
          Length = 196

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG  + +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAVVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPSYLEQLYQAFLPGPLTIILQ--ANDRVPVWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +   +  D  ++  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMDFQEEVSGVEEDAALT--GKDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGAITREDI 187


>gi|183603629|ref|ZP_02716060.2| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573819|gb|EDT94347.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           CDC0288-04]
          Length = 200

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 2   MDRIRQELENGGAVILPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|116516461|ref|YP_816386.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae D39]
 gi|225858813|ref|YP_002740323.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 70585]
 gi|116077037|gb|ABJ54757.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae D39]
 gi|225721912|gb|ACO17766.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae 70585]
          Length = 200

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    + 
Sbjct: 2   MDRIRQELEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|291326241|ref|ZP_06123711.2| Sua5/YciO/YrdC/YwlC family protein [Providencia rettgeri DSM 1131]
 gi|291315158|gb|EFE55611.1| Sua5/YciO/YrdC/YwlC family protein [Providencia rettgeri DSM 1131]
          Length = 220

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 5/183 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + ++ E L+ G  I  PT++ Y +        A++R+  I++  A +       D+S
Sbjct: 28  ARLISQSVEILNKGGVIVYPTDSGYAIGCRLEEKDALQRICRIRQLDANHNFTLMCRDLS 87

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PG  T +L          L     KT   RVP     + L
Sbjct: 88  ELSNYAHVDNTVFRLIKNNTPGNYTFILRATKEVP-RRLMNEKRKTIGLRVPSNPIARDL 146

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           +E  G PL   S    G     +    +   + K++ L+I GG   IG   +T+++   +
Sbjct: 147 LEAVGEPLMSTSLIMPGDDFTQSDPEEIRDLLDKQVDLVIHGGY--IGQKPTTVIDFTDD 204

Query: 187 KKV 189
             V
Sbjct: 205 TPV 207


>gi|195429998|ref|XP_002063044.1| GK21591 [Drosophila willistoni]
 gi|194159129|gb|EDW74030.1| GK21591 [Drosophila willistoni]
          Length = 222

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 13/222 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + S+ +  AL  A + L AG  IA+PT+TVYGLA D+ N  AI+RLYEIK R    P+  
Sbjct: 6   VCSVDEERALDLARQCLLAGQIIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 65

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V +I  ++++   D L   L     PGPLT+V++       +PL   +      R+P  
Sbjct: 66  CVHNIKALRRYGQADHLGDELLTRLLPGPLTIVIERAPALS-NPLLNPSTSKIGIRIPDF 124

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F +KL   +   PLA+ SANRS + S   V+      +  ++  I D G      +  L
Sbjct: 125 QFIRKLCGVWHEQPLALTSANRSSEPSSLQVEE--FRCLWPQLGGIFDAGPIGLTEERRL 182

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
            ST++++       I+R G    ET ++ +    EY + E  
Sbjct: 183 ASTVIDLAKPGSYTIVRAGVALKET-RKVLE---EYGLKENK 220


>gi|213691485|ref|YP_002322071.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522946|gb|ACJ51693.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 233

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 8/210 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
            + +TD + L +A   +  G  + IPT+TVYG+A D RN  AI R+Y +K+RP    L  
Sbjct: 17  TLKVTDES-LAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQV 75

Query: 63  HVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR 118
            ++    + + +   P  L  L+  F PG   P+ +     +   +   +     T   R
Sbjct: 76  LLASTDQLDELSLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGTQGIR 135

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +P       I     PLA  SANRSG  S   V+  +  +   E+ L +DGG ++  + S
Sbjct: 136 IPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSS 194

Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
           T+V         + ILR G +    +++A+
Sbjct: 195 TVVKADPYARDGIEILREGVIAQNVIRKAL 224


>gi|319424446|gb|ADV52520.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens 200]
          Length = 188

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + +  G  IA PTE VYGL  D  N TAI++L  +K+RP    LI   SD   +  +   
Sbjct: 11  DIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70

Query: 77  DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132
             L +  L   F  WPGP T V+ + +   +         +   RV      + L     
Sbjct: 71  SQLTAEQLEFAFSKWPGPFTFVMPIKA--QVSKYLCGEFDSIAVRVSAHAGVQALCRALN 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +G+        IL +    +I  ++ G + +    STI++ +  K +R
Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQHQPSTIIDARSGKILR 185


>gi|225708092|gb|ACO09892.1| Hypothetical protein ywlC [Osmerus mordax]
          Length = 268

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 8/191 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L    + L  G  +A+PT+T+YGLA  ++N  AI+R+YEIK R    PL   V +I 
Sbjct: 61  AEILDATVQSLKEGQVVALPTDTIYGLACLAQNSDAIKRVYEIKGRNGQKPLAICVGEIQ 120

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + K+  V  +   L K   PGP+TLVL    +T ++            R+P   F ++L
Sbjct: 121 DIYKYCKVS-VKEELLKELLPGPVTLVLQR--STVLNTDLNPFTPLVGVRIPNHPFMRRL 177

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQC 185
            +    PLA+ SAN S   S   V       +   + +++DGG       L ST++++  
Sbjct: 178 CQLCAEPLALTSANISTHSSTVAVHE--FQDLWPRLAVVVDGGPIGDHSRLGSTVIDLSV 235

Query: 186 EKKVRILRPGG 196
             K RI+RPG 
Sbjct: 236 FGKYRIIRPGC 246


>gi|110669557|ref|YP_659368.1| DNA binding protein; translation factor [Haloquadratum walsbyi DSM
           16790]
 gi|109627304|emb|CAJ53794.1| probable DNA binding protein; probable translation factor
           [Haloquadratum walsbyi DSM 16790]
          Length = 235

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 10/203 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            DS+ L  A   + +G  +  PTETVYGL VD+ NP AI+R+++ K R   NPL   V  
Sbjct: 30  IDSDVLSAAVRAIKSGELVVYPTETVYGLGVDALNPDAIKRVFDTKGRTYDNPLSLAVES 89

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +S V +H +    ++   K F PGP+T++++   +T +  + TA       R+P      
Sbjct: 90  VSAVARHTNPSERAMQFIKAFLPGPVTVIVEC--STAVPDILTAGRDRVGIRIPDHHVAL 147

Query: 126 KLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L+E     P+   SAN+SG  SI +   +L+ SI + + ++++ G +  G EST+V+  
Sbjct: 148 SLLERAAPTPITATSANQSGTGSIVDTN-MLAQSIQQNVAVVLEAGET-TGTESTVVDPT 205

Query: 185 CEKKVRILRPGGLEIETLKRAIS 207
                 ++   G   + +   +S
Sbjct: 206 RN----VIHRRGAMADAVMAWLS 224


>gi|256830242|ref|YP_003158970.1| Sua5/YciO/YrdC/YwlC family protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579418|gb|ACU90554.1| Sua5/YciO/YrdC/YwlC family protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 204

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 10  NALRKACEFLD--AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +A+R+A E L+   G  +  PTET Y L   +   +A+ R++ +K RP   PL   +SD 
Sbjct: 2   SAVREA-EVLEFARGRLVIYPTETFYALGCLATMHSAVERIFSVKGRPEGKPLPLIISDW 60

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKK 126
            M ++   +      LA+ FWPGPL++V+++     + PL+      +  R+ P     +
Sbjct: 61  QMAERFLRLTSAQEKLARKFWPGPLSIVVEV--DQRVSPLAQDRGGRSAVRMSPHPIAAR 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSI-CKEIPLIIDGGISKIGLESTIVNVQC 185
           L    G PL   SANRSG+     ++ +    +   E  +I D      GL ST+V +  
Sbjct: 119 LCREAGAPLVSSSANRSGRPPACRLEELDPELVRLSEALVITDSPWPGGGLPSTLVEIVG 178

Query: 186 EKKVRILRPGGLEIETLKRA 205
              VRILR G + +E +  A
Sbjct: 179 ANSVRILRAGAIPMEEISAA 198


>gi|139949035|ref|NP_001077336.1| yrdC domain-containing protein, mitochondrial [Danio rerio]
 gi|134025291|gb|AAI34956.1| Zgc:162301 protein [Danio rerio]
          Length = 235

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 8/191 (4%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              L AG  +A+PT+T+YGLA  ++N  AIRR+Y+IK R    PL   V +I  + K+  
Sbjct: 35  VNALKAGQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCK 94

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           V  +   L +   PGP+TLVL+  +T  ++       K    R+P   F ++L +    P
Sbjct: 95  VS-VKDRLLRDLLPGPVTLVLERSAT--LNGDLNPFTKLIGVRIPDHPFMRRLCQMCDTP 151

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKKVRIL 192
           LA+ SAN S Q S           +   + +++DGG    K  L ST+V++    + RI+
Sbjct: 152 LALTSANVSTQSSTVAANE--FEDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRII 209

Query: 193 RPGGLEIETLK 203
           RPG     T++
Sbjct: 210 RPGCALSATVQ 220


>gi|15672582|ref|NP_266756.1| hypothetical protein L189883 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723495|gb|AAK04698.1|AE006293_4 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 270

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A + L +G    +PTETVYGL  D+ N  A+++LY +K RP    L  ++S    + K
Sbjct: 74  ARAIKALKSGQLAILPTETVYGLFADAMNEEAVQKLYSVKGRPTERALNMNISSFEDILK 133

Query: 73  HASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           ++   P+ L    + F PGPLT++L+  ++ D+         T  FR+P    T+K+I+ 
Sbjct: 134 YSINQPVYLQKIVEAFLPGPLTIILE--ASKDVPEWIHIGKSTVGFRMPNIAVTQKIIKE 191

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  L  PSAN SG  S +    +    +      + D   S  GL++TI+++  EK  +
Sbjct: 192 VGV-LVGPSANLSGSKSPSFFADLSPEILENAAVAVQDD--SIYGLDTTIIDLTQEKP-K 247

Query: 191 ILRPGGLEIETLKRAI 206
           +LR G +  E L + +
Sbjct: 248 LLRQGAVTKEELLKKV 263


>gi|326487440|dbj|BAJ89704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 274

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +     + + KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL
Sbjct: 61  MDHILPASQDHVVKAIDAINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIHTRPL 120

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V+D+  + + A VD L   L     PGP+T+VL     + +       L +   RVP
Sbjct: 121 AICVADVPEISRFAMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVP 180

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-S 178
              F + +    G  LA+ SAN SG+ S   VK      +      + DGG+   G   S
Sbjct: 181 KLDFIRSIARGAGSALALTSANLSGRPSSVGVKD--FGDLWPHCSYVFDGGMLPSGRAGS 238

Query: 179 TIVNVQCEKKVRILRPGGLEIET 201
           TIV++      +ILR G    ET
Sbjct: 239 TIVDLITPGVYKILRDGSSREET 261


>gi|54297353|ref|YP_123722.1| hypothetical protein lpp1398 [Legionella pneumophila str. Paris]
 gi|53751138|emb|CAH12549.1| hypothetical protein lpp1398 [Legionella pneumophila str. Paris]
          Length = 206

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LRKA   ++ G  I  PT++ Y L     N +A+ R+  +++    + +     D+S
Sbjct: 14  ARLLRKAVSIIEEGGLIVYPTDSGYALGCSLGNKSALERIRRLRQLDKHHNMTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            +  +A V      L K F PG  T +L+  +T ++  L      +T   RVP    T  
Sbjct: 74  QLGTYAKVSNPIFRLLKAFTPGSYTFILN--ATHEVPRLMLHPKRRTLGLRVPDNTITLS 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    PL   +    G  +  +    +   +  +I LIIDGG       +T+V++  +
Sbjct: 132 LLECLEAPLMSTTLILPGAQAPLSEPEAIKDLLGNQIDLIIDGGNCGH-EPTTVVDLTGD 190

Query: 187 KKVRILRPGGLEIETLK 203
             + I+R G  + E  K
Sbjct: 191 YPI-IIREGKGDPEPFK 206


>gi|152997398|ref|YP_001342233.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas sp. MWYL1]
 gi|150838322|gb|ABR72298.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas sp. MWYL1]
          Length = 210

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 8/200 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +++A E +  G  IA PT+  Y L     +  A+ R+  I++    
Sbjct: 7   QFFQIHPENPQARLVKQAAEVIRNGGVIAYPTDCGYSLGCHLGDKDALDRIRAIRRLDDK 66

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A  D     L K   PGP T +    S      L     KT   
Sbjct: 67  HNFTLVCRDLSEISTYARFDNRLYRLLKNNTPGPYTFIFSATSEVP-RRLLHPKRKTIGI 125

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+E  G P+   S    G+       + +  ++   + L+IDGG   +  
Sbjct: 126 RVPNNNIVSALLEELGEPIMSSSLILPGETDPMTDPYDIRDTLEHALDLVIDGGFCGL-Q 184

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            +T+V +  +  + ++R G 
Sbjct: 185 PTTVVKMDAD-SIEVVRVGA 203


>gi|113968380|ref|YP_732173.1| translation factor SUA5 [Shewanella sp. MR-4]
 gi|114045545|ref|YP_736095.1| translation factor SUA5 [Shewanella sp. MR-7]
 gi|122945098|sp|Q0I0R7|RIMN_SHESR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123325544|sp|Q0HPA1|RIMN_SHESM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|113883064|gb|ABI37116.1| translation factor SUA5 [Shewanella sp. MR-4]
 gi|113886987|gb|ABI41038.1| translation factor SUA5 [Shewanella sp. MR-7]
          Length = 188

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  + +  G  IA PTE VYGL  D  N TAI++L  +K+RP    LI   S+ S +  +
Sbjct: 8   EIKDIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDY 67

Query: 74  ASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                L +  L   F  WPGP T V+ +     +         +   RV      + L +
Sbjct: 68  VDESQLSAEQLEFAFSKWPGPFTFVMPIKPH--VSRYLCGEFDSIAVRVSAHEGVRALCQ 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   SAN +G+    +   IL++    +I  ++ G + +    STI++ +  K +
Sbjct: 126 ALGKPLVSTSANLAGEDPALSGDEILNA-FEGKIDALVLGSLGEQRQPSTIIDARSGKIL 184

Query: 190 R 190
           R
Sbjct: 185 R 185


>gi|319955258|ref|YP_004166525.1| translation factor sua5 [Cellulophaga algicola DSM 14237]
 gi|319423918|gb|ADV51027.1| translation factor SUA5 [Cellulophaga algicola DSM 14237]
          Length = 206

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 9/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSD 66
           +   ++K    L  G  I  PT+TVYGL  D  N  A+ ++  IK             +D
Sbjct: 13  NPKEIKKVINVLKKGGLIIYPTDTVYGLGCDITNTKALEKIARIKGIKLDKANWSFICAD 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S +  +   +D  +  + K   PGP T +L   +     P      KT   RVP     
Sbjct: 73  LSNLSDYVRQIDTPTFKILKRALPGPYTFILPGNNNL---PKEFKKKKTVGIRVPDNSIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           K ++E  G+P+   S     ++   T    ++       + ++IDGG       ST++++
Sbjct: 130 KAIVEALGNPIVSTSIRDEDEVLEYTTDPELIFEKWQNLVDIVIDGGYGD-NKASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
              + + ++R G   I+
Sbjct: 189 SEGEPI-VIREGKGPID 204


>gi|157370905|ref|YP_001478894.1| hypothetical protein Spro_2665 [Serratia proteamaculans 568]
 gi|157322669|gb|ABV41766.1| Sua5/YciO/YrdC/YwlC family protein [Serratia proteamaculans 568]
          Length = 206

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + L  G  I  PT++ Y L       +A+ R+  I++    +       D+S
Sbjct: 14  PRLINQAVDVLRKGGVIVYPTDSGYALGCKLEEKSAMERICRIRQLDGNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAYVDNTAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   +    G     +    +S  + K++ L+I GG       +T++++  E 
Sbjct: 133 LEVLNEPMMSTTLMLPGNDFAESDPEEISDHLGKQVDLVIHGGFLGQ-QPTTVIDLT-ES 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 APEVVREGA 199


>gi|241758536|ref|ZP_04756654.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria flavescens SK114]
 gi|241321309|gb|EER57463.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria flavescens SK114]
          Length = 206

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 5/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  I  PT++ Y L     +  A+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRGGGVIVYPTDSCYALGCKLGDKNAMERILTIRKIDQKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
            +A VD       K   PG  T +L          L     KT   RVP       L++ 
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNATALALLQE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   +             + +   +   + L+IDGG       +T++++    ++ 
Sbjct: 136 LGEPILSCTLMLPEDDEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGTEL- 193

Query: 191 ILRPGGLEI 199
            +R G  +I
Sbjct: 194 -IRQGKGDI 201


>gi|239621650|ref|ZP_04664681.1| conserved protein in the Sua5/YciO/YrdC family protein
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296454708|ref|YP_003661851.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|317482071|ref|ZP_07941095.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|239515525|gb|EEQ55392.1| conserved protein in the Sua5/YciO/YrdC family protein
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|296184139|gb|ADH01021.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium longum subsp.
           longum JDM301]
 gi|316916430|gb|EFV37828.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 233

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
            + +TD + L +A   +  G  + IPT+TVYG+A D RN  AI R+Y +K+RP    L  
Sbjct: 17  TLKVTDES-LAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQV 75

Query: 63  HVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR 118
            ++    + +     P  L  L+  F PG   P+ +     +   +   +     T   R
Sbjct: 76  LLASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGTQGIR 135

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +P       I     PLA  SANRSG  S   V+  +  +   E+ L +DGG ++  + S
Sbjct: 136 IPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSS 194

Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
           T+V         + ILR G +    +++A+
Sbjct: 195 TVVKADPYARDGIEILREGVIAQNVIRKAL 224


>gi|326521554|dbj|BAK00353.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 214

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +     + + KA + ++ G  IA+PT+T+YG A D+ +  A+ R+YEIK R    PL
Sbjct: 1   MDHILPASQDHVVKAIDAINGGQVIAVPTDTIYGFACDACSAEAVNRIYEIKGRIHTRPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V+D+  + + A VD L   L     PGP+T+VL     + +       L +   RVP
Sbjct: 61  AICVADVPEISRFAMVDHLPHGLLHNLLPGPVTVVLKRGENSILERSLNPGLDSIGVRVP 120

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-S 178
              F + +    G  LA+ SAN SG+ S   VK      +      + DGG+   G   S
Sbjct: 121 KLDFIRSIARGAGSALALTSANLSGRPSSVGVKD--FGDLWPHCSYVFDGGMLPSGRAGS 178

Query: 179 TIVNVQCEKKVRILRPGGLEIET 201
           TIV++      +ILR G    ET
Sbjct: 179 TIVDLITPGVYKILRDGSSREET 201


>gi|251792412|ref|YP_003007138.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533805|gb|ACS97051.1| Sua5/YciO/YrdC/YwlC family protein [Aggregatibacter aphrophilus
           NJ8700]
          Length = 207

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 5/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S
Sbjct: 14  ARLINQAVEILRKGGVIVYPTDSGYALGCMIGDKHAMDRIVQIRQLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  ++ V      L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSNYSLVPNSVYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNQIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++  G P+   S     +  IT +    +   + +++ LII GG   +G E T V    +
Sbjct: 133 LKALGEPILSCSLMLPNEEHITQSDPEEIRDRLERQVDLIIHGGY--LGQEPTTVVDLTD 190

Query: 187 KKVRILRPGGLE 198
               ILR G   
Sbjct: 191 STPIILREGSGS 202


>gi|319639149|ref|ZP_07993903.1| hypothetical protein HMPREF0604_01527 [Neisseria mucosa C102]
 gi|317399588|gb|EFV80255.1| hypothetical protein HMPREF0604_01527 [Neisseria mucosa C102]
          Length = 206

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + + +G  I  PT++ Y L     + TA+ R+  I+K    + L    +D+S + 
Sbjct: 17  IKQAADIVRSGGVIVYPTDSCYALGCKLGDKTAMERILTIRKIDQKHHLTLMCADLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
            +A VD       K   PG  T +L          L     KT   RVP       L++ 
Sbjct: 77  TYAKVDNAQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNATALALLQE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   +             + +   +   + L+IDGG       +T++++    ++ 
Sbjct: 136 LGEPILSCTLMLPEDEEPLTDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVIDMTDGTEL- 193

Query: 191 ILRPGGLEI 199
            +R G  +I
Sbjct: 194 -IRQGKGDI 201


>gi|55820818|ref|YP_139260.1| Sua5/YciO/YrdC family protein [Streptococcus thermophilus LMG
           18311]
 gi|55736803|gb|AAV60445.1| hypothetical protein, Sua5/YciO/YrdC family protein [Streptococcus
           thermophilus LMG 18311]
          Length = 201

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E L+ G  + +PTETVYGL   + +  A+  +YE+K RP    +  +V+    +  
Sbjct: 6   KQLREILNNGEAVVLPTETVYGLFAKALDEKAVDYVYELKNRPRDKAMNLNVASYEDILF 65

Query: 73  HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++   P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++LI+ 
Sbjct: 66  YSKEQPKYLKQLYDAFLPGPLTIIL--KANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL  PSAN+SG+ S  +    + +    ++    D   + +G++STI+++      R
Sbjct: 124 EG-PLIGPSANKSGKESGRHFDD-IRAQFDFQVTGYQDDN-ALLGVDSTILDLSVS-PAR 179

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G +  + L  A+
Sbjct: 180 ILRQGKITKDDLLAAL 195


>gi|27366331|ref|NP_761859.1| YciO family [Vibrio vulnificus CMCP6]
 gi|37679408|ref|NP_934017.1| putative translation factor [Vibrio vulnificus YJ016]
 gi|320156839|ref|YP_004189218.1| YciO family [Vibrio vulnificus MO6-24/O]
 gi|27362532|gb|AAO11386.1| YciO family [Vibrio vulnificus CMCP6]
 gi|37198151|dbj|BAC93988.1| putative translation factor [Vibrio vulnificus YJ016]
 gi|319932151|gb|ADV87015.1| YciO family [Vibrio vulnificus MO6-24/O]
          Length = 206

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 3/182 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRNGGVVVYPTDSGYALGCQLENKQALDRICQIRRLDEKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +           L  A  KT   RVP       L
Sbjct: 74  ELSIYARVDNTAFRLLKNNTPGPYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNRIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   S    G+         +   +   + +I++GG       +T+++     
Sbjct: 133 LDALGEPLMSTSLILPGKEVTEADPEEIRDKLEHAVDVILNGGYLGE-QPTTVIDFSEGD 191

Query: 188 KV 189
            V
Sbjct: 192 AV 193


>gi|88802782|ref|ZP_01118309.1| putative Sua5/yciO/yrdC family protein [Polaribacter irgensii 23-P]
 gi|88781640|gb|EAR12818.1| putative Sua5/yciO/yrdC family protein [Polaribacter irgensii 23-P]
          Length = 205

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 10/199 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   + K  + L AG  +  PT+TVYGL  D     A+ ++ ++K             +D
Sbjct: 13  NPKEITKIVKVLQAGGLVIYPTDTVYGLGCDITKVKALEKIAQLKGVKLDKANFSFICND 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           +S +  +   +D  +  + K   PGP T +L   +     P      KT   R+P     
Sbjct: 73  LSHLSDYVKQIDSTTFKILKRALPGPYTFILPGSTNL---PKVFKKKKTVGIRIPDNNII 129

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + L+   G+P+   S      +   T    ++       + ++IDGG       ST++++
Sbjct: 130 RMLVAELGNPIVSTSIRDEDDVLEYTTDPELIFEKWQNSVDVVIDGGYGD-NEPSTVIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
              +  +++R G   ++ L
Sbjct: 189 T--EAPKVIREGKGSLDIL 205


>gi|332876662|ref|ZP_08444421.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685367|gb|EGJ58205.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 202

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 8/195 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           +   + KA + L  G  I  PT+TVY +  D+ N  A+ R+  +K   P  + L     D
Sbjct: 11  NPREMAKALKMLRDGELIIYPTDTVYAIGCDALNVRAVERICALKGVNPQKSNLSIICYD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +S + ++A V   +  L K   PGP T +L   S     P    N K    RVP     +
Sbjct: 71  LSNISEYAQVSNAAFKLLKKNLPGPFTFILPTSSRL---PKIYKNKKEVGIRVPDNSIAR 127

Query: 126 KLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L++  G+P+   S +   +I   +    ++       + L+IDGG       ST+VN  
Sbjct: 128 GLVDGLGNPILTMSVHDEDEIIEYSTDPELIHEKYEGRVALVIDGGYGGS-EASTVVNC- 185

Query: 185 CEKKVRILRPGGLEI 199
            +    ++R G  E+
Sbjct: 186 VDDAFEVVRQGKGEL 200


>gi|307130977|ref|YP_003882993.1| putative RNA-binding protein [Dickeya dadantii 3937]
 gi|306528506|gb|ADM98436.1| predicted RNA-binding protein [Dickeya dadantii 3937]
          Length = 206

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E L  G  I  PT++ Y L     +  A+ R+  I+     +       D+S
Sbjct: 14  PRLINQTVEILHKGGVIVYPTDSGYALGCMLEDKAAMERICRIRDLDQNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP      +L
Sbjct: 74  ELSSYAYVDNAAFRLMKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGMRVPSNPIALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     +    +   + K + L+I GG       +T++++    
Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQEQLGKRVDLVIHGGFLGQ-QPTTVIDLTESV 191

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 192 PV-VVREG 198


>gi|91216559|ref|ZP_01253525.1| hypothetical protein P700755_03367 [Psychroflexus torquis ATCC
           700755]
 gi|91185353|gb|EAS71730.1| hypothetical protein P700755_03367 [Psychroflexus torquis ATCC
           700755]
          Length = 189

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 3/183 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L  G  I  PT+TV+G+  D+ N  AI ++Y +K +P    LIC V D  M+ 
Sbjct: 8   ILECIQILKRGGLILYPTDTVWGIGCDATNAEAIDKIYALKNQPNTKSLICLVPDFKMLN 67

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++    P   +    +   P T++        I     A+  T   RV    F K+LI  
Sbjct: 68  QYVEDIPEVAYDILKYADKPTTIIYQNP--IRISTNLIADDDTLGIRVVDDIFAKELIRK 125

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           Y  P+   SAN SGQ +  N   I    +     ++     +K    STI+ +  + KV 
Sbjct: 126 YKRPIVSTSANISGQPTPANFFEISPEILNGVDYVVNLYQSTKNKKPSTIIKLDLDGKVE 185

Query: 191 ILR 193
           ++R
Sbjct: 186 VIR 188


>gi|253989544|ref|YP_003040900.1| hypothetical protein PAU_02064 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780994|emb|CAQ84156.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 206

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ +    G  +  PT++ Y +     +  A+ R+  I++    +       D+S
Sbjct: 14  PRLIGQSVDVFKNGGVVVYPTDSGYAIGCHLEDKDAMTRICRIRQLDNHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  EISTYAYVDNSAFRLIKNNTPGNYTFILRATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +    +  ++ K + LII GG       +T++++  + 
Sbjct: 133 LEQVGEPLMSTSLILPGNDFAESDPEEIKDNLGKLVDLIIHGGYLGQ-QPTTVIDLTDDT 191

Query: 188 KVRILRPGG 196
            V I +  G
Sbjct: 192 PVVIRKGVG 200


>gi|158521439|ref|YP_001529309.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3]
 gi|158510265|gb|ABW67232.1| Sua5/YciO/YrdC/YwlC family protein [Desulfococcus oleovorans Hxd3]
          Length = 225

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 6/203 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  + +AC  L+AG  +  PT T+YGLA D+ N +A+ ++ +IK RP   P++  + D 
Sbjct: 25  DSALIDRACGLLNAGGVLVFPTVTLYGLAADAWNRSAVEKVRQIKGRPDDKPILILIPDA 84

Query: 68  SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +      +  P  +  L   FWPG +TLV +  +    H +S +   T   RVP      
Sbjct: 85  AAAAGLVTTVPAGAEQLMDRFWPGNVTLVFEASARVPSHLISPSG--TIGLRVPSHPVAH 142

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+   G P+   SANRSG  +   V   L   I +   +++D G+   G+ ST+V+V  
Sbjct: 143 ALVVRLGRPVTGTSANRSGSPACGRVAD-LDVDIVRLADMVLDAGVLGGGVGSTVVDVTM 201

Query: 186 EKKVRILRPGGLEIETLKRAISV 208
               ++LR G +    + +A   
Sbjct: 202 N-PPKVLREGTVRAADILKAAGT 223


>gi|307132802|ref|YP_003884818.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein
           [Dickeya dadantii 3937]
 gi|306530331|gb|ADN00262.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein
           [Dickeya dadantii 3937]
          Length = 190

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 11/197 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +MS  +S  L    + L     IA PTE V+GL  D  + TA+ RL  +K+RP    LI 
Sbjct: 1   MMSNINSEDLAPLLQQLREENVIAYPTEAVFGLGCDPDSETAVERLLALKQRPREKGLIL 60

Query: 63  HVSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             +D   ++ +  +     +        WPGP+T VL   + T      T    +   RV
Sbjct: 61  IAADFQQLEPYVDISALSDIQRQTIFASWPGPVTWVLP--AKTVTPDWLTGRFTSLAVRV 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 K+L   +G PL   SAN SGQ      + + +    +  P +++G +      S
Sbjct: 119 SDHPLVKQLCLVFGKPLVSTSANLSGQPPCRTAREV-AEQFGEGFP-VLNGEVGGRLNPS 176

Query: 179 TIVNVQCEKKVRILRPG 195
            I +        +LR G
Sbjct: 177 EIRDALTG---EMLRQG 190


>gi|145627820|ref|ZP_01783621.1| putative translation factor, SUA5 [Haemophilus influenzae 22.1-21]
 gi|144979595|gb|EDJ89254.1| putative translation factor, SUA5 [Haemophilus influenzae 22.1-21]
          Length = 207

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A+V+ ++  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYATVNNIAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           +   G P+   S     +   T +    +   +  ++ LII GG   +G E +T+V++  
Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190

Query: 186 EKKVRILRPGGLEIE 200
           E  V ILR G    +
Sbjct: 191 ESPV-ILREGSGSTD 204


>gi|57239024|ref|YP_180160.1| hypothetical protein Erum2950 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578965|ref|YP_197177.1| hypothetical protein ERWE_CDS_03010 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161103|emb|CAH58012.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417591|emb|CAI26795.1| Conserved hypothetical protein (putative translation factor SUA5
           family) [Ehrlichia ruminantium str. Welgevonden]
          Length = 199

 Score =  168 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 7/197 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E L     I  PTETVY LA D+ +   I+++Y+IK RP   P+   +S+I  +K
Sbjct: 2   ISKAVEALKNKQLICFPTETVYALAGDAYSIEVIQKIYKIKNRPYNKPVSLLLSNIDQIK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + +++   + ++ +   PGP+T +L + +   +      N      R+P       ++  
Sbjct: 62  QFSNLTEHTAYIIQQLSPGPITFILPIHNYGKLPKQFFYNK--IGIRIPNHPIALAILNN 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           + HP+   S N SGQ    +V   +S +I K I  IID      G  ST++++      +
Sbjct: 120 FDHPITATSVNISGQQDAISVDQ-ISDNIKKNISFIIDNNRLVHGTASTVIDLTS---YK 175

Query: 191 ILRPGGLEIETLKRAIS 207
           ILR G +  + ++  + 
Sbjct: 176 ILRKGAVTKQKIQEILK 192


>gi|330830520|ref|YP_004393472.1| translation factor YciO [Aeromonas veronii B565]
 gi|328805656|gb|AEB50855.1| translation factor YciO [Aeromonas veronii B565]
          Length = 206

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A + +  G  I  PT++ Y L     +  A+ R+  I++  A +       D+S
Sbjct: 14  ARLIGQAVQIIQNGGVIVYPTDSGYALGCQMGDKGALERICRIRRLDANHDFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PG  T +           L     K+   RVP     + L
Sbjct: 74  EISTYAKVDNSAFRLIKNNTPGAYTFIFKATKEVP-RRLMNEKKKSIGIRVPDNKIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +               +   + K+I L+++GG       +T+V+   ++
Sbjct: 133 LEALGEPLLSTTLILPDSEIAEFDPEEIFDKLGKQIDLVVNGGYLGE-QPTTVVDFSDDE 191

Query: 188 KVRILRPGG 196
            V   R  G
Sbjct: 192 PVLRRRGAG 200


>gi|254821300|ref|ZP_05226301.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium intracellulare
           ATCC 13950]
          Length = 219

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 5/195 (2%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLH 82
            + +PT+TVYG+  D+ N  A+  L   K R    P+   V     ++      P  +  
Sbjct: 29  LVVMPTDTVYGIGADAFNSAAVSVLLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPDGARD 88

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
           L + FWPG L+LV+    +            T   R+P       +     PLA+ SAN 
Sbjct: 89  LIRAFWPGALSLVVTQAPSLQW--DLGDARGTVMLRMPLHPVAIELLREVGPLAVSSANI 146

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ +  +        +   + + ++ G S+ G  STIV++      RILR G +  E +
Sbjct: 147 SGRTAAVDAGEA-RDQLGDLVDVYLEAGPSEQGAASTIVDLTG-PTPRILRLGPVSAERI 204

Query: 203 KRAISVELEYCVDET 217
              + V+ E    E 
Sbjct: 205 AEVLGVDPEGLTAEA 219


>gi|294670991|ref|ZP_06735847.1| hypothetical protein NEIELOOT_02697 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307478|gb|EFE48721.1| hypothetical protein NEIELOOT_02697 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 206

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA PT++ Y L     +  A+ R+  I++    + L    +D+ 
Sbjct: 14  ERLIKQAAEIVRNGGVIAYPTDSCYALGCRLGDKEAMERILRIRQIDLKHHLTLMCADLG 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD       K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELGTYAKVDNSQFRQLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNKIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +          +  + +   +   + L+IDGG    G+E T V    + 
Sbjct: 133 LNELGEPLLSCTLMLPEDGEPLSDPYEIRDRLEHSVDLVIDGGWC--GMEPTTVVDMTDG 190

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 191 TVLVREGRG 199


>gi|238919595|ref|YP_002933110.1| hypothetical protein NT01EI_1694 [Edwardsiella ictaluri 93-146]
 gi|238869164|gb|ACR68875.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 206

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 79/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++  E L  G  I  PT++ Y L       +A+ R+  I++  + +       D+S
Sbjct: 14  PRLIKQVVEVLHKGGVIVYPTDSGYALGCMLEEKSAMERICRIRRIDSNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A V+  +  L K   PG  T +L          L +   KT   RVP     + L
Sbjct: 74  ELSSYAFVNNAAFRLLKNNTPGGYTFILKASKGVP-RRLMSEKRKTIGLRVPSNPIARDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S          +    +   + K++ L+I GG       +T++++  + 
Sbjct: 133 LAELGEPLMSTSLMLPESEFTESDPEEIQERLGKQVDLVIHGGYLGQ-QPTTVIDLTEDT 191

Query: 188 KVRILRPGGLEIETLK 203
            + ++R G  + +  +
Sbjct: 192 PL-VVRVGAGDPKPFQ 206


>gi|308235422|ref|ZP_07666159.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC
           14018]
 gi|311114829|ref|YP_003986050.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC
           14019]
 gi|310946323|gb|ADP39027.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis ATCC
           14019]
          Length = 220

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 13/217 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L+ A + ++AG  I +PT+TVYG+A D  N  A+ ++Y++K+RP    L
Sbjct: 1   MSKICTINEESLQLAAQIINAGGVIVVPTDTVYGVACDPFNEDAVAKIYQLKRRPRTKAL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANL------- 112
              +S +S ++K     P  L  LA+ F PG  + +      +    L+T          
Sbjct: 61  QILMSSVSDLEKLGLYLPNPLDVLAEKFLPGGYSPIARAKKDSVATRLATLCKADESSEK 120

Query: 113 --KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
              T   RVP       I     PLA  SANRSG  S  + +  +++    EIPL ++ G
Sbjct: 121 CEATQGVRVPDCPELMQILRVTGPLAASSANRSGNESADSAEEAVAA-FGYEIPLYLNAG 179

Query: 171 ISKIGLESTIV--NVQCEKKVRILRPGGLEIETLKRA 205
            ++  + ST+V  +   +  + ILR G +  E ++  
Sbjct: 180 PTRSHVASTVVGADASDKDGIVILREGVISEEQIRAE 216


>gi|161528935|ref|YP_001582761.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosopumilus maritimus SCM1]
 gi|160340236|gb|ABX13323.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosopumilus maritimus SCM1]
          Length = 198

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 5/198 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + KA + ++ G  +  PT+TVYG+  +  +  + +++YEIK R    P    V   
Sbjct: 6   DKEGIEKASKVIEDGGIVIFPTDTVYGIGCNPYSKESAKKVYEIKSRDFSKPFPVLVYSK 65

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +  + A  D +S  L + FWPG LT++L L        L+ ++      RVP       
Sbjct: 66  EIASQIAEFDEISEKLVEKFWPGQLTILLKLKDEKLKESLNLSDK--IALRVPNHKCTLS 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +    H L   SAN SGQ S  + +  + S   +   + +DGG      ESTI+ ++ + 
Sbjct: 124 LLEKCHYLIGTSANVSGQPSFFDPQECIKSV--ENYDVFVDGGTITSKGESTIIAIE-DG 180

Query: 188 KVRILRPGGLEIETLKRA 205
           K++I+R G L  E + + 
Sbjct: 181 KIKIIREGSLSKEEILKV 198


>gi|282600503|ref|ZP_05974542.2| protein RimN [Providencia rustigianii DSM 4541]
 gi|282564965|gb|EFB70500.1| protein RimN [Providencia rustigianii DSM 4541]
          Length = 201

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 53/194 (27%), Positives = 77/194 (39%), Gaps = 8/194 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           ++ M    + A++     L     IA PTE V+GL  D  + TA+ +L E+K+RP    L
Sbjct: 10  LKTMQNQSTPAIKNIINALQQQQVIAYPTEAVFGLGCDPDSETAVNKLLELKQRPWEKGL 69

Query: 61  ICHVSDISMVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I        +K +     L+          WPGP+T V+    TT      T    T   
Sbjct: 70  ILIADSYEQLKNYVDDSQLTDQQRQTMFATWPGPVTWVVPAKKTT--PKWLTGKFDTLAV 127

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RV      K+L   YG P+   SAN SG         ++       IP I+DG +     
Sbjct: 128 RVTNHELVKELCSQYGKPIVSTSANLSGLEPCRTTGEVV-EQFQDTIP-ILDGEVGGRLN 185

Query: 177 ESTIVNVQCEKKVR 190
            S I +    +  R
Sbjct: 186 PSEIRDAMTGQLYR 199


>gi|312971455|ref|ZP_07785630.1| yrdC domain protein [Escherichia coli 1827-70]
 gi|310336052|gb|EFQ01252.1| yrdC domain protein [Escherichia coli 1827-70]
 gi|323187498|gb|EFZ72807.1| yrdC domain protein [Escherichia coli RN587/1]
          Length = 183

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 4/178 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S +  ++ VD 
Sbjct: 1   MRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDN 60

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
           ++  L K   PG  T +L          L     KT   RVP     + L+E  G P+  
Sbjct: 61  VAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLS 119

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            S    G     +    +   + K++ LII GG       +T++++  +  V ++R G
Sbjct: 120 TSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDTPV-VVREG 175


>gi|297570958|ref|YP_003696732.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931305|gb|ADH92113.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 215

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 5/211 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++S TD+ A     + + AG  + +PT+TVYG+  D  +  A+  L   K R    P 
Sbjct: 1   MVVVSSTDTQARTAVQKAVRAGKVVCLPTDTVYGVGADPFSYDAVTALLAAKSRTRAMPP 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
              V+ I   +  A   P S   L + FWPG LT++L    T       T    T   R+
Sbjct: 61  PVLVASIEQAESLAETVPASARALMEEFWPGALTIILPARETLGWDLGET--FGTVALRM 118

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P     +    +  PLA+ SAN++GQ   T +     + + + + + +DGG S  G+ S+
Sbjct: 119 PDDSATRDFLAHIGPLAVTSANKTGQPPATTIADA-ETQLGESVAVYVDGGTSPGGVPSS 177

Query: 180 IVNVQ-CEKKVRILRPGGLEIETLKRAISVE 209
           IV          ++R G L I  L R + +E
Sbjct: 178 IVRWHPATDTYDVVRLGALSIADLSRIVRIE 208


>gi|260171739|ref|ZP_05758151.1| hypothetical protein BacD2_07728 [Bacteroides sp. D2]
 gi|315920051|ref|ZP_07916291.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693926|gb|EFS30761.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 204

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 9/202 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSNISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +                ++       + L+IDGGI  I   ST+
Sbjct: 125 IIREIARLLDAPIMTTTLPYEEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIETL 202
           V    + ++ I+R G   +E +
Sbjct: 184 VKCT-DDELEIIRQGKGWLEEV 204


>gi|222153025|ref|YP_002562202.1| hypothetical protein SUB0873 [Streptococcus uberis 0140J]
 gi|222113838|emb|CAR41937.1| conserved hypothetical protein [Streptococcus uberis 0140J]
          Length = 199

 Score =  168 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L+ G  + +PTETVYG+   + + TA+  +Y++KKRP    +  +V+D   + 
Sbjct: 2   IEEFEEILNNGGALVLPTETVYGIFAKALDETAVNHVYQLKKRPRDKAMNLNVADYQTIL 61

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           + +   P  L  L + F PGPLT++L   +   +     +   T  FR+P    T  LI+
Sbjct: 62  EFSKEQPSYLKDLFEAFLPGPLTIIL--KANNKVPVWINSGKSTVGFRLPNHSLTADLIK 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG  S      IL++    E+    D   +  G +STIV++  EK  
Sbjct: 120 KTG-PLIGPSANISGNESGKEFASILAA-FDHEVAGYEDD-QAITGQDSTIVDLSGEK-A 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G L ++ LK+ +
Sbjct: 176 KILRQGALTVDELKKVV 192


>gi|331266422|ref|YP_004326052.1| translation factor (SUA5), putative [Streptococcus oralis Uo5]
 gi|326683094|emb|CBZ00712.1| translation factor (SUA5), putative [Streptococcus oralis Uo5]
          Length = 199

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 1   MDRIRQELEKGGAVVLPTETVYGLFAKALDEKAVDHVYKLKRRPRDKALNLNVASLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 61  HFSKNQPTYLQKLVEAFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SG+ S      IL     + + L  D  ++  G +STI+++  +K V
Sbjct: 119 ETG-PLIGPSANISGRASGVAFARILEDFDQEVLGLEDDAFLT--GQDSTILDLSGDK-V 174

Query: 190 RILRPGGLEIETL 202
           +ILR G ++ E +
Sbjct: 175 KILRQGAIKREDI 187


>gi|117918499|ref|YP_867691.1| translation factor SUA5 [Shewanella sp. ANA-3]
 gi|212288226|sp|A0KR66|RIMN_SHESA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|117610831|gb|ABK46285.1| translation factor SUA5 [Shewanella sp. ANA-3]
          Length = 188

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  + +  G  IA PTE VYGL  D  N TAI++L  +K+RP    LI   S+ S +  +
Sbjct: 8   EIKDLVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLVDY 67

Query: 74  ASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
                L +  L   F  WPGP T V+ +     +         +   RV      + L +
Sbjct: 68  VDESQLSAEQLEFAFSKWPGPFTFVMPIKPH--VSRYLCGEFDSIAVRVSAHDGVRALCQ 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   SAN +G+    +   IL++    +I  ++ G + +    STI++ +  K +
Sbjct: 126 ALGKPLVSTSANLAGEDPALSGDEILNA-FEGKIDALVLGALGEQRQPSTIIDARSGKIL 184

Query: 190 R 190
           R
Sbjct: 185 R 185


>gi|237650079|ref|ZP_04524331.1| hypothetical protein SpneC1_05027 [Streptococcus pneumoniae CCRI
           1974]
 gi|237822152|ref|ZP_04597997.1| hypothetical protein SpneC19_07568 [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 200

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 8/195 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    +   
Sbjct: 4   RIRQELEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHF 63

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   
Sbjct: 64  SKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRET 121

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V+I
Sbjct: 122 G-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-VKI 177

Query: 192 LRPGGLEIETLKRAI 206
           LR G ++ E +   +
Sbjct: 178 LRQGAIKREDILARL 192


>gi|120596862|ref|YP_961436.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella sp. W3-18-1]
 gi|146291140|ref|YP_001181564.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens CN-32]
 gi|212288225|sp|A4Y1D2|RIMN_SHEPC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288228|sp|A1RDY7|RIMN_SHESW RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|120556955|gb|ABM22882.1| translation factor SUA5 [Shewanella sp. W3-18-1]
 gi|145562830|gb|ABP73765.1| translation factor SUA5 [Shewanella putrefaciens CN-32]
          Length = 188

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + +  G  IA PTE VYGL  D  N TAI++L  +K+RP    LI   SD   +  +   
Sbjct: 11  DIVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70

Query: 77  DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132
             L +  L   F  WPGP T V+ + +   +         +   RV      + L     
Sbjct: 71  SQLTAEQLEFAFSKWPGPFTFVMPIKA--QVSKYLCGEFDSIAVRVSAHAGVQALCRALN 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +G+        IL +    +I  ++ G + +    STI++ +  K +R
Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQRQPSTIIDARSGKILR 185


>gi|90413785|ref|ZP_01221773.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum
           3TCK]
 gi|90325254|gb|EAS41751.1| Putative Sua5/YciO/YrdC family protein [Photobacterium profundum
           3TCK]
          Length = 192

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 8/194 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I  + D + L++    L +G  IA PTE V+G+  D  +  AI +L  +K+RP    L
Sbjct: 1   MVIYEV-DMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDHSQAIEKLLALKQRPIEKGL 59

Query: 61  ICHVSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I   ++   ++ +        L        WPGP+T V+ +     + PL T    +   
Sbjct: 60  ILIAANYQQLQPYIDDTQLSDLQKQKIFSTWPGPVTWVMPVKKG--VSPLLTGKFTSIAV 117

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RV      +KL   +G P+   SAN +G      V  +  S + + +  I++G       
Sbjct: 118 RVSDHPLVQKLCHQFGKPITSTSANLTGLPPCKTVAEV-HSQLGEHLSAILEGETGGREN 176

Query: 177 ESTIVNVQCEKKVR 190
            + I +   +  +R
Sbjct: 177 PTEIRDAFSDTVLR 190


>gi|149003882|ref|ZP_01828705.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758112|gb|EDK65116.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pneumoniae
           SP14-BS69]
          Length = 199

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 8/195 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++    +   
Sbjct: 3   RIRQELEKGGAVVLPTETVYGLFSKALDEKAVDHVYQLKRRPRDKALNLNIASFEDILHF 62

Query: 74  ASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           +   P  L  L + F PGPLT++L+  +   +     ++L T  FR+P    T  LI   
Sbjct: 63  SKNQPAYLQKLVETFLPGPLTIILE--ANDRVPYWVNSDLATIGFRMPSHPITLDLIRET 120

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL  PSAN SGQ S    + IL     + + L  D  ++  G +STIV++  +K V+I
Sbjct: 121 G-PLIGPSANISGQASGVTFEQILKDFDQEVLGLEDDAFLT--GQDSTIVDLSGDK-VKI 176

Query: 192 LRPGGLEIETLKRAI 206
           LR G ++ E +   +
Sbjct: 177 LRQGAIKREDILARL 191


>gi|323127210|gb|ADX24507.1| Sua5/YciO/YrdC family protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 196

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D   + 
Sbjct: 1   MERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFDSIL 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             +   P  L  L + F PGPLT++L   +   +     + L T  FR+P       +  
Sbjct: 61  AFSKEQPTYLEKLYQAFLPGPLTVILK--ANNHVPHWINSGLATVGFRLPSHPITAALIQ 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SG+ S      I+     + I    D  ++  G +STI+++  E  V 
Sbjct: 119 KTGPLIGPSANLSGKPSGKVFDQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGESPV- 175

Query: 191 ILRPGGLEIETL 202
           ILR G +  E L
Sbjct: 176 ILRQGAITKEEL 187


>gi|85059382|ref|YP_455084.1| hypothetical protein SG1404 [Sodalis glossinidius str. 'morsitans']
 gi|84779902|dbj|BAE74679.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 206

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + L  G  I  PT++ Y L     + TA+ R+  I++    +       D+S
Sbjct: 14  PRLVSQAVDLLRKGAVIVYPTDSGYALGCQLEDKTAMERICRIRQLDGHHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 74  ELSTYAQVDNQAFRLMKNNTPGKYTFILKATKEVP-RRLMSDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   +    G     +    +   + K++ L+I GG       +T++++  + 
Sbjct: 133 LEVLDKPMMSTTLMLPGNDFAESDPESICDHLGKQVDLVIHGGFLGQ-QPTTVIDLT-DP 190

Query: 188 KVRILRPG 195
             R++R G
Sbjct: 191 TPRVVRQG 198


>gi|304412740|ref|ZP_07394343.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183]
 gi|307305795|ref|ZP_07585541.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175]
 gi|304348950|gb|EFM13365.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183]
 gi|306911288|gb|EFN41714.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175]
          Length = 188

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + +  G  IA PTE VYGL  D  N TAI++L  +K+RP    LI   SD   +  +   
Sbjct: 11  DIILQGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70

Query: 77  DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132
             L +  L   F  WPGP T V+ + +   +         +   RV      + L     
Sbjct: 71  SQLTAEQLEFAFSKWPGPFTFVMPIKAH--VSKYLCGEFDSIAVRVSAHAGVQTLCRALN 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +G+        IL +    +I  ++ G + +    STI++ +  K +R
Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQRQPSTIIDARSGKILR 185


>gi|296170242|ref|ZP_06851835.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895118|gb|EFG74836.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 222

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 5/195 (2%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-LSLH 82
            + +PT+TVYG+  D+ N  A+  L   K R    P+   V     ++      P  +  
Sbjct: 32  LVVMPTDTVYGIGADAFNSAAVTALLSAKGRGRDMPVGVLVGSWHTIEGLVYTMPGGARD 91

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
           L + FWPG L+LV+    +            T   R+P       +     P+A+ SAN 
Sbjct: 92  LIRAFWPGALSLVVTQAPSLQW--DLGDARGTVMLRMPLHPVAIELLREVGPMAVSSANV 149

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG+ +  +        + + + + +D G ++    STIV++      RILRPG +  E +
Sbjct: 150 SGRPAAVDAAEA-RDQLGELVDVYLDAGTAQQQAASTIVDLTGPAP-RILRPGPVSAERI 207

Query: 203 KRAISVELEYCVDET 217
              + V+ E    + 
Sbjct: 208 AEVLGVDAESLTAQG 222


>gi|237739267|ref|ZP_04569748.1| SUA5 protein [Fusobacterium sp. 2_1_31]
 gi|229422875|gb|EEO37922.1| SUA5 protein [Fusobacterium sp. 2_1_31]
          Length = 217

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I  I+D     +  + L  G  I  PT+TVYGLA    N  +I  +Y  K R   +PLI 
Sbjct: 10  ISDISDDKW-TELADELKEGSLIIYPTDTVYGLASIVTNEQSINNIYLAKSRSFTSPLIA 68

Query: 63  HVSDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            +S +  V++ A++   +      LA  FWPG LT++L       I  +  +   T   R
Sbjct: 69  LLSSVDKVEEVATISDENREILEKLAHAFWPGALTVILKRKEH--IPNIMVSGGDTIGVR 126

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P      K+I+  G  LA  SAN SG+ +  +    LS +I   + +++DGG  K+G  
Sbjct: 127 IPNLDLAIKIIDLAGGILATTSANISGEATPKSYNE-LSEAIKSRVDILVDGGECKLGEA 185

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           STI+++  +   +ILR G +  + + + I 
Sbjct: 186 STIIDLTSDVP-KILRNGAISTDEITKIIG 214


>gi|170781880|ref|YP_001710212.1| hypothetical protein CMS_1485 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156448|emb|CAQ01596.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 320

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 10/219 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +R A + +  G  + IPT+TVYG+A D+ NP A++RL + K R    P    +   S +
Sbjct: 20  GMRLARQAVGRGEVVVIPTDTVYGIAADAFNPEAVQRLLDAKGRGRDAPPPVLIPGQSTL 79

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
              A  V  +   +   FWPG LT++L    +  +         T   R+P      ++ 
Sbjct: 80  DALADFVPDVVRRMVDEFWPGGLTVILVAQPS--LVWDLGETRGTVALRMPANSYALVLL 137

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ----C 185
               PLA+ SAN++GQ +    +  +   + + + + +DGG +     STIV+       
Sbjct: 138 AETGPLAVSSANKTGQPAAATAQEAV-DQLGESVDIFLDGGAAGG-AASTIVDASRVTQA 195

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ-SP 223
             +VRI+R G +    +++ I  ELE  V     P+ +P
Sbjct: 196 GGRVRIVREGAITRAQIQQLIGDELEPVVTAPVEPEQAP 234


>gi|602960|gb|AAB59987.1| ORF1 [Escherichia coli str. K-12 substr. W3110]
          Length = 183

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 4/178 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S +  ++ VD 
Sbjct: 1   VRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDN 60

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
           ++  L K   PG  T +L          L     KT   RVP     + L+E  G P+  
Sbjct: 61  VAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLS 119

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            S    G     +    +   + K++ LII GG       +T++++  +  V ++R G
Sbjct: 120 TSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLTDDTPV-VVREG 175


>gi|294635973|ref|ZP_06714415.1| Sua5/YciO/YrdC/YwlC family protein [Edwardsiella tarda ATCC 23685]
 gi|291090702|gb|EFE23263.1| Sua5/YciO/YrdC/YwlC family protein [Edwardsiella tarda ATCC 23685]
          Length = 206

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++  + L  G  I  PT++ Y L        A+ R+  I++  + +       D+S
Sbjct: 14  PRLIKQVVDILRKGGVIVYPTDSGYALGCMLEEKNAMERICRIRRIDSNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP     + L
Sbjct: 74  ELSSYAFVDNAAFRLLKNNTPGGYTFILKASKEVP-RRLMSEKRKTIGLRVPSNPIAQDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +          +    +   + K + L+I GG       +T++++  + 
Sbjct: 133 LAELGEPLMSTTLMLPDSEFAESDPEEIQERLGKLVDLVIHGGYLGQ-QPTTVIDMTDDN 191

Query: 188 KVRILRPG 195
             +++R G
Sbjct: 192 P-QVVRVG 198


>gi|254428427|ref|ZP_05042134.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
 gi|196194596|gb|EDX89555.1| Sua5/YciO/YrdC/YwlC family protein [Alcanivorax sp. DG881]
          Length = 207

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 3/195 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A + + +G  IA PT+T Y L        A+ RL  +++    +       D+S
Sbjct: 14  PRLIRQAVDVIRSGGLIAYPTDTTYALGCGIGEKAALDRLIRLRQLDKKHEFTLLCHDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +L   +      L     +T   RVP     + L
Sbjct: 74  ALAIYAKVDNPDYRLLKAHTPGAYTFILQGTTEVP-RRLMHPKKRTIGIRVPDHAICQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G P+   + +             +   +   + L+IDGG      E+T++++   +
Sbjct: 133 LAEHGEPIMTSTCHLPNDEFPLTDPQDVRDFLENHVDLVIDGGFCGT-TETTVISLSEGE 191

Query: 188 KVRILRPGGLEIETL 202
              ++R G   I+ +
Sbjct: 192 GPVVVREGAGPIDAI 206


>gi|212277721|sp|A4WF91|RIMN_ENT38 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 190

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ +A + L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   +
Sbjct: 9   SIAQAVDVLKNEEVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQL 68

Query: 71  KKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+          WPGP+T V   L +T      T    +   RV       +
Sbjct: 69  KPYIDDSMLTEQQRNTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVE 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L ET+G PL   SAN +G       + +L +      P+++ G        S I +    
Sbjct: 127 LCETFGKPLVSTSANLTGLPPCRTSQEVL-AQFGDGFPVVV-GETGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           ++ R
Sbjct: 185 ERFR 188


>gi|320457559|dbj|BAJ68180.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 224

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 8/210 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
            + +TD + L +A   +  G  + IPT+TVYG+A D RN  AI R+Y +K+RP    L  
Sbjct: 8   TLKVTDES-LAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQV 66

Query: 63  HVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR 118
            ++    + + +   P  L  L+  F PG   P+ +     +   +   +     T   R
Sbjct: 67  LLASTDQLDELSLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGTQGIR 126

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +P       I     PLA  SANRSG  S   V+  +  +   E+ L +DGG ++  + S
Sbjct: 127 IPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSS 185

Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
           T+V         + ILR G +    +++A+
Sbjct: 186 TVVKADPYARDGIEILREGVIAQNVIRKAL 215


>gi|270160110|ref|ZP_06188766.1| Sua5/YciO/YrdC/YwlC family protein [Legionella longbeachae D-4968]
 gi|289165112|ref|YP_003455250.1| translation factor [Legionella longbeachae NSW150]
 gi|269988449|gb|EEZ94704.1| Sua5/YciO/YrdC/YwlC family protein [Legionella longbeachae D-4968]
 gi|288858285|emb|CBJ12153.1| putative translation factor [Legionella longbeachae NSW150]
          Length = 206

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LRKA   ++ G  I  PT++ Y L     N +A+ R+  +++    + +     D+S
Sbjct: 14  ARLLRKAVNIIEDGGIIVYPTDSGYALGCGLGNKSALERIRRLRQLDKNHNMTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            +  +A V      L K F PG  T +L+  +T ++  L      KT   RVP    T  
Sbjct: 74  QLGLYARVSNPIFRLLKAFTPGAYTFILN--ATHEVPRLMLHPKRKTLGLRVPDNVITLA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    PL   +    G  +  +    +   +  +I L+IDGG       +T+V++  +
Sbjct: 132 LLECLEAPLMSTTLILPGAKAPLSEPEAIRDLLGNQIDLVIDGGHCGQ-EPTTVVDLTGD 190

Query: 187 KKVRILRPGGLEIETLK 203
             V I+R G  + E  K
Sbjct: 191 YPV-IIREGKGDPEPFK 206


>gi|261250597|ref|ZP_05943172.1| YrdC family protein [Vibrio orientalis CIP 102891]
 gi|260939166|gb|EEX95153.1| YrdC family protein [Vibrio orientalis CIP 102891]
          Length = 185

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 7/182 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A   L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   ++   +  
Sbjct: 5   ERALSALKQGEVIAYPTEGVFGVGCDPDNPNAIKKLLELKQRPVEKGLILIAANYQQLLP 64

Query: 73  HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +     LS    +     WPGP+T ++   S+  +    +    +   RV      +K+ 
Sbjct: 65  YIDQQALSAEQLERVQQTWPGPVTWIMP--SSDKVSNWVSGQYDSIAVRVTDHPLVQKMC 122

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +G PL   SAN +G+      + +    +  ++  +++G        S I + +  + 
Sbjct: 123 NAFGKPLTSTSANLTGEPPCVTTEQVYQH-LGDKLVAVLEGQTGGRTNPSEIRDARTSQV 181

Query: 189 VR 190
           +R
Sbjct: 182 LR 183


>gi|307153963|ref|YP_003889347.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7822]
 gi|306984191|gb|ADN16072.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7822]
          Length = 217

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 10/206 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L  G  +  PT+TVY +  D    +A+ R+ ++K+     PL    S +S
Sbjct: 14  KRQIDQIVDALKRGAIMLYPTDTVYAIGCDMNTKSAVERVRKLKQLSNDKPLTFLSSSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            + ++A V   +  + K   PGP T +L   +T  +  L  +   KT   RVP     + 
Sbjct: 74  NISEYAVVTDQAYRIMKRLIPGPYTFLLP--ATKLVPKLVMSPKRKTTGIRVPDNEVCQA 131

Query: 127 LIETYGHPLAIPSANRSGQ--ISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           +++T G+P+   SA+         T    K  L  S+   + +IID G++     STI++
Sbjct: 132 ILQTLGNPIISTSAHLPDDDGDFPTLGLEKARLFDSMDSLVDIIIDTGVNPGFEVSTILD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISV 208
           +  ++ V +    GL  E L+  I+V
Sbjct: 192 LTQDEPVIVRE--GLGWEQLQNWIAV 215


>gi|23466265|ref|NP_696868.1| Sua5/YciO/YrdC family protein [Bifidobacterium longum NCC2705]
 gi|189440759|ref|YP_001955840.1| putative translation factor [Bifidobacterium longum DJO10A]
 gi|227546618|ref|ZP_03976667.1| translation factor Sua5 [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|312134012|ref|YP_004001351.1| translation factor [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689784|ref|YP_004209518.1| hypothetical protein BLIF_1602 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691730|ref|YP_004221300.1| hypothetical protein BLLJ_1541 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23327014|gb|AAN25504.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium
           longum NCC2705]
 gi|189429194|gb|ACD99342.1| Putative translation factor [Bifidobacterium longum DJO10A]
 gi|227212935|gb|EEI80814.1| translation factor Sua5 [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|311773317|gb|ADQ02805.1| Putative translation factor [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|320456586|dbj|BAJ67208.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461120|dbj|BAJ71740.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 224

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
            + +TD + L +A   +  G  + IPT+TVYG+A D RN  AI R+Y +K+RP    L  
Sbjct: 8   TLKVTDES-LAQAARVIRDGGLVVIPTDTVYGVACDPRNKAAIDRIYRLKRRPRYKALQV 66

Query: 63  HVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR 118
            ++    + +     P  L  L+  F PG   P+ +     +   +   +     T   R
Sbjct: 67  LLASTDQLDELGLDLPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTADGRPGTQGIR 126

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +P       I     PLA  SANRSG  S   V+  +  +   E+ L +DGG ++  + S
Sbjct: 127 IPNSALCLAILKATGPLAASSANRSGDESAQTVQEAV-DAFGSEVDLYLDGGPTQGHVSS 185

Query: 179 TIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
           T+V         + ILR G +    +++A+
Sbjct: 186 TVVKADPYARDGIEILREGVIAQNVIRKAL 215


>gi|68249744|ref|YP_248856.1| hypothetical protein NTHI1369 [Haemophilus influenzae 86-028NP]
 gi|229844847|ref|ZP_04464985.1| putative translation factor, SUA5 [Haemophilus influenzae 6P18H1]
 gi|68057943|gb|AAX88196.1| putative translation factor, SUA5 [Haemophilus influenzae 86-028NP]
 gi|229812228|gb|EEP47919.1| putative translation factor, SUA5 [Haemophilus influenzae 6P18H1]
 gi|301169939|emb|CBW29543.1| conserved protein [Haemophilus influenzae 10810]
          Length = 207

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 7/193 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A+V+  +  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYATVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           +   G P+   S     +   T +    +   +  ++ LII GG   +G E +T+V++  
Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190

Query: 186 EKKVRILRPGGLE 198
           E  V ILR G   
Sbjct: 191 ESPV-ILREGSGS 202


>gi|293390210|ref|ZP_06634544.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950744|gb|EFE00863.1| SUA5 protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 207

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I++ P  +      SD+S + 
Sbjct: 17  INQAVEILRNGGVIVYPTDSGYALGCMIGDKHAMDRIVHIRQLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            ++ V   +  L K   PG  T +L          L  +  KT   RVP       L++ 
Sbjct: 77  TYSLVTNSAYRLIKNNTPGRYTFILTATKELP-RRLMASKRKTIGIRVPDNQIALDLLKA 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G P+   S     +  +T +    +   +  ++ LII GG   +G E +T+V++  +  
Sbjct: 136 LGEPILSCSLMLPNEEHLTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTGDTP 193

Query: 189 VRILRPG 195
           V ILR G
Sbjct: 194 V-ILREG 199


>gi|119476916|ref|ZP_01617197.1| putative translation factor (SUA5) [marine gamma proteobacterium
           HTCC2143]
 gi|119449723|gb|EAW30960.1| putative translation factor (SUA5) [marine gamma proteobacterium
           HTCC2143]
          Length = 207

 Score =  167 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A + L  G  I  PT++ Y +     N  A+  +  ++K  + +       D+S
Sbjct: 14  SRLINQAVDILKGGGVIVYPTDSGYAIGCQLGNKKALDTIRRVRKLDSSHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PGP T +L   S      L     +T   RVP      +L
Sbjct: 74  ELGSYAKVDNTAYRLLKNHTPGPYTFILKATSEVP-KRLMHPKRRTIGLRVPENNIALQL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186
           +     P+   +    G        + +  ++  E+ L+IDGG    G+E T ++++  +
Sbjct: 133 LAGLNEPMMSVTMILPGDDLPMTDPYDIRQTLEHELDLVIDGGYC--GMEPTSVIDLVDD 190

Query: 187 KKVRILRPGG 196
             V I R  G
Sbjct: 191 MPVIIRRGQG 200


>gi|220916607|ref|YP_002491911.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954461|gb|ACL64845.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 212

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 5/189 (2%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
            AG  +  PTET YGL   + +  A+ RL   K RP   PL    +D   V + AS++  
Sbjct: 17  RAGGIVVYPTETFYGLGALASDDAALVRLAAAKLRPEGKPLPLVAADREQVDRVASLEGA 76

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138
           +  LA   WPGPLTLVL       +    TA   T   R+P     + L    G  L   
Sbjct: 77  AARLAGRLWPGPLTLVLPARPG--LSEAITAGSGTVGVRIPGSEVARALARMAGGALVST 134

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG      V   L +++  ++  ++D G +  GL ST+V +  E  +R++RPG + 
Sbjct: 135 SANLSGGPPPDRV-EALDAALRGQVDHVLDAGPTPGGLPSTVVAIAGE-TLRVVRPGAVS 192

Query: 199 IETLKRAIS 207
           IE +  A+ 
Sbjct: 193 IEQVTAALG 201


>gi|172036646|ref|YP_001803147.1| putative Sua5/YciO/YrdC/YwlC [Cyanothece sp. ATCC 51142]
 gi|171698100|gb|ACB51081.1| putative Sua5/YciO/YrdC/YwlC [Cyanothece sp. ATCC 51142]
          Length = 221

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 10/208 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + + C+ L  G  +  PT+TVY +  D  + +A++R+ ++K+     PL    S +S
Sbjct: 18  PRRIDEICDSLRKGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLS 77

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            + ++A V   +  + K   PGP T +L   +T  +  L  +   KT   RVP     + 
Sbjct: 78  NISEYAGVTDEAYRIMKRVIPGPYTFLLP--ATKAVPKLVMSPKRKTTGIRVPDHPICQA 135

Query: 127 LIETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++    +P+   SA+   +     +I   K  L   +  ++ +IID  +      STI++
Sbjct: 136 ILTELNNPIISTSAHLPDEEGEFPTIGLEKARLFDILESQVDMIIDNSLEPGFDVSTILD 195

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL 210
           +  +    I+R G L  E L+  ++VE+
Sbjct: 196 MTSD-PPSIIRQG-LGWEALQNWVTVEV 221


>gi|153875764|ref|ZP_02003416.1| translation factor [Beggiatoa sp. PS]
 gi|152067772|gb|EDN66584.1| translation factor [Beggiatoa sp. PS]
          Length = 208

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 8/207 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  +I   N     + +  + +  G  I  PT++ Y L     +  A+ R+  I++    
Sbjct: 3   QFFTIHPQNPQQRLISQTVDIIKKGGVIVYPTDSSYALGCYMGDKAAMERISFIRQTDKN 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +         S +  +A+V+  +  L K   PGP T +L   +      L     KT   
Sbjct: 63  HNFTLVCRAFSEIGTYANVNNTAFRLMKSLTPGPYTFILKATNEVP-RRLQNPKRKTIGV 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP     + ++E  G PL   +    G+ +       +   + K++ LIIDGG      
Sbjct: 122 RVPDHSIVQAIVEMLGEPLMSSTLIMPGKETPETEPDTIKELLQKQVDLIIDGGNCGF-E 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            +TIV++  E   +ILR G   I+ L 
Sbjct: 181 ATTIVDMMTESP-QILRQGKGPIDVLN 206


>gi|269128125|ref|YP_003301495.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM
           43183]
 gi|268313083|gb|ACY99457.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM
           43183]
          Length = 216

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 7/189 (3%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD-PLS 80
           G  + +PT+TVYG+   +  P A+  L + K R    P    +     +    +   P  
Sbjct: 27  GELVVLPTDTVYGVGCGAFLPDAVDALLKAKGRGRQMPAPVLIGSPEALADLVTDTGPYG 86

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPS 139
             L + FWPG LTLV   +    +  +      T   R+P      +L+   G P+A+ S
Sbjct: 87  PALIEEFWPGALTLVFPAVPG--LARVLGDAQGTVAVRMPRDELALELLREAG-PMAVSS 143

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN +G+ +         + + + + + +DGG + +G  S+IV++  ++  R+LR G L  
Sbjct: 144 ANLTGRPAARTAGEAF-AQLGESVAVYLDGGPAPLGEPSSIVDLSGDEP-RLLRAGALAA 201

Query: 200 ETLKRAISV 208
           ETL+R    
Sbjct: 202 ETLRRVCGT 210


>gi|218438456|ref|YP_002376785.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7424]
 gi|218171184|gb|ACK69917.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7424]
          Length = 217

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 10/207 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++ +  + L +G  +  PT+TVY +  D    +A+ R+ ++K+     PL    S +S
Sbjct: 14  QRSIEQISDALKSGAIMLYPTDTVYAIGCDMNTKSAVERVRQLKQLSNDKPLTFLCSSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            + ++A V   +  + K   PGP T +L   +T  +  L  +   KT   RVP     + 
Sbjct: 74  NISEYALVTDQAYRIMKRLIPGPYTFLLP--ATKLVPKLVMSPKRKTTGIRVPDNEVCQA 131

Query: 127 LIETYGHPLAIPSANRSGQI--SITN--VKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           L+ +  +P+   SA+   +     T    K  L  ++ K + +IID G+      STI++
Sbjct: 132 LLTSLDNPIISASAHLPDEEGDFPTMGVEKARLFDALDKLVDIIIDSGVEPGFEVSTIID 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVE 209
           +   + + + +  GL  E L   ++++
Sbjct: 192 LTDNEPIIVRQ--GLGWEELDNWMALK 216


>gi|332290311|ref|YP_004421163.1| conserved hypothetical protein, yrdC domain protein [Gallibacterium
           anatis UMN179]
 gi|330433207|gb|AEC18266.1| conserved hypothetical protein, yrdC domain protein [Gallibacterium
           anatis UMN179]
          Length = 207

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 7/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  QRLINQAVDILRDGGVIVYPTDSGYALGCMLGDKHAMDRIIRIRKLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +  ++ V      L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSNYSLVTNTIYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGIRVPDNNIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQC 185
           ++T G P+   S    G+   T +    + + +  ++ LII GG   +G   +T+V++  
Sbjct: 133 LKTLGEPILSCSLMLPGEEYFTLSDPEEIRNLLENQVDLIIHGGY--LGQDPTTVVDLTV 190

Query: 186 EKKVRILRPGGLEIE 200
           E  V ILR G   IE
Sbjct: 191 EPPV-ILREGSGSIE 204


>gi|163788700|ref|ZP_02183145.1| translation factor [Flavobacteriales bacterium ALC-1]
 gi|159875937|gb|EDP69996.1| translation factor [Flavobacteriales bacterium ALC-1]
          Length = 206

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 9/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +  A++     L  G  I  PT+TVYGL  D  N  A+ R+  IK              D
Sbjct: 13  NPKAIQNVVNVLKRGGLIIYPTDTVYGLGCDITNIKALERIAIIKGVKLEKSNFSFVCED 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S +  +   +D  +  + K   PG  T +L         P      KT   RVP     
Sbjct: 73  LSNLSDYVKQIDTRTFKILKRALPGAYTFILPGSKNL---PNPFKKRKTVGIRVPDNSIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             L+E  G+P+   S       I  T    ++       + L+IDGG       STI+++
Sbjct: 130 LALVEALGNPIVSTSIRDEDDVIEYTTDPELILEKWDDLVDLVIDGGYGG-NEASTIIDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
             +  + I+R G  ++E
Sbjct: 189 SEDDPI-IVREGKGDLE 204


>gi|197122573|ref|YP_002134524.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K]
 gi|220917357|ref|YP_002492661.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|196172422|gb|ACG73395.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K]
 gi|219955211|gb|ACL65595.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 207

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 6/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L +G  IA PT+T YG+  D  +  AI R+Y++K+ P  + L     D++
Sbjct: 16  PRVVERAVSALSSGGVIAYPTDTFYGIGCDLFDKRAIERIYQLKQLPRTHELAFICQDLA 75

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + ++A VD  +  + +   PGP T +L   +T  +  L     KT   R+P      +L
Sbjct: 76  EISRYAIVDNAAYRVLRRKVPGPFTFILP--ATRLVPELVLRRQKTVGIRIPDSPIALEL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   GHPL   SA +     I    H +   +   + LI+DGG  +    S+++++   +
Sbjct: 134 VRRLGHPLISTSAAKPEGE-ILIDAHDIKDELGHGLDLILDGGF-RPAEPSSVIDLSGPE 191

Query: 188 KVRILRPGGLEIETL 202
            V ++R G  ++  L
Sbjct: 192 PV-VVRAGKGDVSDL 205


>gi|329116378|ref|ZP_08245095.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parauberis NCFD
           2020]
 gi|326906783|gb|EGE53697.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parauberis NCFD
           2020]
          Length = 196

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 6/196 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E +  G  + +PTETVYG+   + +  A+  +Y++K+RP    +  +++    + 
Sbjct: 1   MKELIEQIKNGQAVVLPTETVYGIFAKAMDENAVDNVYQLKQRPRDKAMNLNIASYQDIL 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++   P  L  L   F PGPLT++L   +   +     +   T  FR+P       I  
Sbjct: 61  DYSQGQPAYLEKLVNAFLPGPLTIIL--KANQKVPAWINSGKTTVGFRMPNHPVTCQIIK 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SG  S    K I+ +    ++    D   +  G +STI++V   K  +
Sbjct: 119 ETGPLIGPSANISGDDSGKTFKAIMKA-FNYQVDGYSDDA-ALTGQDSTIIDVSGLK-AK 175

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G +  E L   +
Sbjct: 176 ILRQGSITKEELLDVV 191


>gi|170727252|ref|YP_001761278.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908]
 gi|169812599|gb|ACA87183.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella woodyi ATCC 51908]
          Length = 213

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  I  PT++ Y L        A+ R+  I++    +       D S
Sbjct: 21  ARLINQAVNAIKNGGVIVYPTDSGYALGCLLGEKDAMSRIARIRQIDNDHNFSLMCRDQS 80

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  + K   PGP T +           L     KT   RVP       L
Sbjct: 81  ELSTYAKVDNQAYRVLKHNTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S    G+    +    +   +  ++ +II GG       +T++++  E 
Sbjct: 140 LEALDEPLMSTSLILPGEEFTESDPEHIRDILEHQVDVIIHGGYLGE-KPTTVIDL-SEG 197

Query: 188 KVRILRPGGLEI 199
            + I+R G  +I
Sbjct: 198 DIEIIREGAGDI 209


>gi|114561217|ref|YP_748730.1| SUA5/yciO/yrdC domain-containing protein [Shewanella frigidimarina
           NCIMB 400]
 gi|122301201|sp|Q08A23|RIMN_SHEFN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|114332510|gb|ABI69892.1| translation factor SUA5 [Shewanella frigidimarina NCIMB 400]
          Length = 188

 Score =  167 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 7/181 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
                +  G  IA PTE V+GL  D  N +AI +L  +K+RP    LI   S    +  +
Sbjct: 8   AVATTIQQGGVIAYPTEAVFGLGCDPDNDSAIEKLLVVKQRPWQKGLILVASSFEQLLPY 67

Query: 74  ASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +  L+   L  A+  WPGP T V+ + S   +  L      +   RV      ++L +
Sbjct: 68  LDITQLTEQQLQFAQSKWPGPFTFVMPIQSH--VSKLLCGEFDSIAVRVSAHPVVRELCD 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T   PL   SAN +G+  + + +HI++     +I  +I G + +    STI++ +  + +
Sbjct: 126 TLNKPLVSTSANLAGEQPVVDAQHIITD-FSDKIDALILGKLGEQRQPSTIIDARSGQIL 184

Query: 190 R 190
           R
Sbjct: 185 R 185


>gi|330506808|ref|YP_004383236.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP-6]
 gi|328927616|gb|AEB67418.1| Sua5/YciO/YrdC/YwlC family protein [Methanosaeta concilii GP-6]
          Length = 190

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A  F+  G  +  PTETVYGL  ++ +  A+ R++ IKKRP   P+   VS + M++
Sbjct: 2   IPSAARFIIGGGVVVYPTETVYGLGANALDEQAVMRVFLIKKRPLSMPISLAVSSLEMLR 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           + A V    + + +   PGP++++L     + +  + TA       R P   +   I   
Sbjct: 62  EVAEVRDDDMDILEDLLPGPVSILL--RKKSIVPDILTAGSSLVGIRFPDHESALRIIDK 119

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+   SANR+GQ +  + K + S  I   + L++DGG  K    ST+++++     +I
Sbjct: 120 AGPITSTSANRTGQPAPVSAKEV-SKEIEDRVELVVDGGRCKYCQPSTLLDLENR---KI 175

Query: 192 LRPGGLEIETLKRA 205
           +RPG    + LK  
Sbjct: 176 IRPGAGLDKALKAI 189


>gi|322387786|ref|ZP_08061395.1| Sua5/YciO/YrdC family protein [Streptococcus infantis ATCC 700779]
 gi|321141653|gb|EFX37149.1| Sua5/YciO/YrdC family protein [Streptococcus infantis ATCC 700779]
          Length = 200

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +V+ +  + 
Sbjct: 2   MEKIKQELEKGGAVVLPTETVYGLFAKALDKKAVDHVYQLKRRPRDKALNLNVAHLDDIL 61

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +    P    L   F PGPLT++L+  +   +     ++L T  FR+P    T +LI 
Sbjct: 62  NFSKNQPPYLQKLVDSFLPGPLTIILE--ANDKVPYWVNSDLMTVGFRMPSHPITLELIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G PL  PSAN SGQ S  + + IL     +E+  I D      G +STI+++   K  
Sbjct: 120 EFG-PLIGPSANISGQASGASFEEILKD-FGQEVLGIEDDAF-LTGQDSTILDLTACK-A 175

Query: 190 RILRPGGLEIETLKRAI 206
           RILR G +  E +   I
Sbjct: 176 RILRQGSITREDILAKI 192


>gi|269957241|ref|YP_003327030.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305922|gb|ACZ31472.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 236

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 10/226 (4%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +  +TD N    A+ +A   +  G  + +PT+TVYG+A ++ +  A+  +   K R    
Sbjct: 8   VHDVTDPNTWGAAIDEAVNAVRRGALVVLPTDTVYGVAAEAFDAGAVAAIGTAKGRADRT 67

Query: 59  PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P    V D+  +   A  V   +  LA  FWPG LTLVL    +         N      
Sbjct: 68  PPPVLVPDVRTLDGLATEVSDDARALADAFWPGALTLVLRAQPSLQW--DLGDNRGVVAL 125

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       +     PLA+  A R G+ +  +      + +   + + +DGG    G  
Sbjct: 126 RMPDHPAALALLRRTGPLAVTGAQRVGETAPLDA-DAARAQLGDAVAVYLDGGPVPGGG- 183

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
           ST+V+       R++RPG +++E L+  +        ++ +   SP
Sbjct: 184 STVVDATV-TPPRVVRPGAIDVEALREVVPAIEPLAAEDDAPATSP 228


>gi|109899136|ref|YP_662391.1| Sua5/YciO/YrdC/YwlC family protein [Pseudoalteromonas atlantica
           T6c]
 gi|109701417|gb|ABG41337.1| translation factor SUA5 [Pseudoalteromonas atlantica T6c]
          Length = 206

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++ACE +  G  +  PT++ Y +     + +A+ ++  I++    +       D+S
Sbjct: 14  ARLIKQACELIHNGQVVVYPTDSGYSIGCHMDDKSALEQICRIRQIGKDHNFTLMCRDMS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + ++A VD  +  + K   PGP T +L          L     +T   RVP       L
Sbjct: 74  ELSEYAQVDNAAFRMIKNNTPGPYTFILKATKEVP-KRLQNPKRRTIGIRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +      I   +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEELGEPLMSTTLILPNAIVAESDPDEIRDKLEKQVGLIIHGGFLGE-QPTTVIDL-SDG 190

Query: 188 KVRILRPG 195
           +  I+R G
Sbjct: 191 EPTIIREG 198


>gi|291457346|ref|ZP_06596736.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium breve DSM
           20213]
 gi|291381181|gb|EFE88699.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium breve DSM
           20213]
          Length = 228

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 8/208 (3%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +TD + L +A   +  G  I IPT+TVYG+A D RN  AI R+YE+K+RP    L   +
Sbjct: 14  KVTDES-LAQAARIIHDGGLIVIPTDTVYGVACDPRNAAAIARIYELKRRPRYKALQVLL 72

Query: 65  SDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                + +     P  L  L+  F PG   P+ +     +   +   +     T   R+P
Sbjct: 73  DSTDQLDELGLELPSPLNRLSAAFLPGAFSPIAVARPDCTLETLADTAEGRPGTQGIRIP 132

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  I     PLA  SANRSG  S   V   +  +   +I L +DGG ++  + ST+
Sbjct: 133 NSALCLEILRATGPLAASSANRSGDESAQTVDEAV-EAFGNQIDLYLDGGPTQGHISSTV 191

Query: 181 VNVQ--CEKKVRILRPGGLEIETLKRAI 206
           V         + ILR G +    +++A+
Sbjct: 192 VKADPYARDGIEILREGVIPQSMIRKAL 219


>gi|167855223|ref|ZP_02477993.1| hypothetical protein HPS_06619 [Haemophilus parasuis 29755]
 gi|167853676|gb|EDS24920.1| hypothetical protein HPS_06619 [Haemophilus parasuis 29755]
          Length = 206

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 7/189 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +      SD+S
Sbjct: 14  QRLINQAVEIIKNGGVIVYPTDSGYALGCAIGDKHAMDRIVAIRRLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   S  L K   P P T +L   +T D+        KT   RVP       L
Sbjct: 74  ELSTYALVTNQSYRLIKNNVPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNVIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           I   G P+   S     +    +    +   +  ++ LII GG   +G   +T++++  +
Sbjct: 132 ISALGEPILSCSLMLPNEAITQSDPDEIREHLEHQVDLIIHGGY--LGQSPTTVIDLTQD 189

Query: 187 KKVRILRPG 195
               I+R G
Sbjct: 190 SP-EIIRVG 197


>gi|321463246|gb|EFX74263.1| hypothetical protein DAPPUDRAFT_215182 [Daphnia pulex]
          Length = 226

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 109/219 (49%), Gaps = 13/219 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
             +  L+ A E L +G  IA+PT+T+YG+A  S++P A+++LY+IK R    P+   VS 
Sbjct: 12  NSAAILKNAVELLKSGSVIALPTDTLYGIACLSQSPEALKKLYQIKSRDKNKPVAICVSQ 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +S + K   V  +   L     PGP+TLV +      ++P      K    R+P   F +
Sbjct: 72  VSEIAKWGHVT-VDERLLHDLLPGPVTLVFERSPA--LNPELNPGTKLVGIRIPDSWFIR 128

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LESTIV 181
           +L  +   PLA+ SAN SG  S  +V+  L   I + +  + +GG    G    L ST+V
Sbjct: 129 QLSNSCAEPLALTSANISGSQSTLSVEEFLG--IWEHLGAVFNGGPIPDGSTARLGSTVV 186

Query: 182 NVQCEKKVRILRPGG---LEIETLKRAISVELEYCVDET 217
           ++      RI+RPG    + +E L++   VE      E 
Sbjct: 187 DLSSPGTYRIIRPGCAQTITVEKLEKYGLVEASEPASEN 225


>gi|154151514|ref|YP_001405132.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000066|gb|ABS56489.1| Sua5/YciO/YrdC/YwlC family protein [Methanoregula boonei 6A8]
          Length = 190

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 13/198 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +A   L     I  PT+T+YGL  D+ +  A+ ++YE KKR    P+   VSD  M
Sbjct: 2   DIIERAVSVLTHDGLIVYPTDTLYGLGADAFSDEALEKVYEAKKRDLSKPISIAVSDFEM 61

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   +   P +    + F PGP+T+++ +     +  + +        R+P      ++I
Sbjct: 62  LAAVSHTTPFAEEFIERFLPGPVTVIVPVRKM--LPEILSGGTGMIGIRIPAHGVALQII 119

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E +  P+   SAN SG       +            L +DGG    G  ST+V++  ++ 
Sbjct: 120 EKFDAPITATSANLSGGKDPQTPEECTVPR-----DLFVDGGRLA-GKPSTVVDLTKKEI 173

Query: 189 VRILRPGGLEIETLKRAI 206
           VR     G E + ++  +
Sbjct: 174 VR----RGAEADAIEAFL 187


>gi|16273118|ref|NP_439354.1| hypothetical protein HI1198 [Haemophilus influenzae Rd KW20]
 gi|145639282|ref|ZP_01794888.1| hypothetical protein CGSHiII_00989 [Haemophilus influenzae PittII]
 gi|260581102|ref|ZP_05848923.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|319776560|ref|YP_004139048.1| protein, putative translation factor SUA5 [Haemophilus influenzae
           F3047]
 gi|329124071|ref|ZP_08252618.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus aegyptius ATCC
           11116]
 gi|1175684|sp|P45103|Y1198_HAEIN RecName: Full=Uncharacterized protein HI_1198
 gi|1574127|gb|AAC22852.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|145271585|gb|EDK11496.1| hypothetical protein CGSHiII_00989 [Haemophilus influenzae PittII]
 gi|260092231|gb|EEW76173.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|309751159|gb|ADO81143.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
 gi|317451151|emb|CBY87384.1| conserved protein, putative translation factor SUA5 [Haemophilus
           influenzae F3047]
 gi|327467496|gb|EGF12994.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus aegyptius ATCC
           11116]
          Length = 207

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 7/193 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V+  +  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           +   G P+   S     +   T +    +   +  ++ LII GG   +G E +T+V++  
Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190

Query: 186 EKKVRILRPGGLE 198
           E  V ILR G   
Sbjct: 191 ESPV-ILREGSGS 202


>gi|145631248|ref|ZP_01787021.1| hypothetical protein CGSHi22421_04153 [Haemophilus influenzae
           R3021]
 gi|145637047|ref|ZP_01792710.1| hypothetical protein CGSHiHH_02268 [Haemophilus influenzae PittHH]
 gi|148828348|ref|YP_001293101.1| hypothetical protein CGSHiGG_09710 [Haemophilus influenzae PittGG]
 gi|144983175|gb|EDJ90670.1| hypothetical protein CGSHi22421_04153 [Haemophilus influenzae
           R3021]
 gi|145269701|gb|EDK09641.1| hypothetical protein CGSHiHH_02268 [Haemophilus influenzae PittHH]
 gi|148719590|gb|ABR00718.1| hypothetical protein CGSHiGG_09710 [Haemophilus influenzae PittGG]
          Length = 207

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 7/190 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S + 
Sbjct: 17  INQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A V+  +  L K   PG  T +L          L T+  KT   RVP       L+  
Sbjct: 77  TYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDLLSA 135

Query: 131 YGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKK 188
            G P+   S     +   T +    +   +  ++ LII GG   +G E +T+V++  E  
Sbjct: 136 LGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTEESP 193

Query: 189 VRILRPGGLE 198
           V ILR G   
Sbjct: 194 V-ILREGSGS 202


>gi|59711642|ref|YP_204418.1| hypothetical protein VF_1035 [Vibrio fischeri ES114]
 gi|59479743|gb|AAW85530.1| conserved protein [Vibrio fischeri ES114]
          Length = 206

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLINQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +           L     KT   RVP       L
Sbjct: 74  ELSIYARVDNSIFRLLKNNTPGAYTFIFKGTKEVP-RRLMNPKRKTIGMRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G     +    +   +   + LI++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGYLGE-QPTTVIDFSDDD 191

Query: 188 KVRILRPGG 196
            ++I R G 
Sbjct: 192 -IKIARVGA 199


>gi|325978214|ref|YP_004287930.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325178142|emb|CBZ48186.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 199

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 8/191 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  + +PTETVYGL   + N  A+  +Y++K+RP    +  +V+D   +   +   
Sbjct: 7   ILQNGGAVILPTETVYGLFAQAMNEKAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQ 66

Query: 78  PLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135
           P  L  L   F PGPLT++L   +   +     + L T  FR+P    T KLI+  G PL
Sbjct: 67  PSYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SGQ S    K I             D  ++  G++STI+++   K  RILR G
Sbjct: 124 IGPSANISGQESGKVFKEIQKQFGGTVTGFADDAALT--GVDSTILDLSG-KTARILRQG 180

Query: 196 GLEIETLKRAI 206
            +    L   +
Sbjct: 181 AITQNDLLAVV 191


>gi|119505057|ref|ZP_01627133.1| putative translation factor (SUA5) [marine gamma proteobacterium
           HTCC2080]
 gi|119459039|gb|EAW40138.1| putative translation factor (SUA5) [marine gamma proteobacterium
           HTCC2080]
          Length = 208

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E L +G  IA PT++ Y L     +  A+  +  I+K    +       D+S++ 
Sbjct: 17  VRQAVEILRSGGVIAYPTDSAYALGCRLGDKRALECIRRIRKLDDNHNFTLVCPDLSVLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A VD  +  L K   PGP T +L+         L     KT   RVP    T+ L+  
Sbjct: 77  AYAKVDNSAYRLIKNATPGPYTFILEATGEVP-RRLLHPRRKTVGVRVPDNAITQALLAE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +  P+   +    G        + + +++  ++ L+IDGG   +   +T++++  +    
Sbjct: 136 FAEPIMSVTLQLPGDDYPLTDPYDIRTTLEHDVALVIDGGFCGL-EPTTVIDLSAD-SYE 193

Query: 191 ILRPGGLEIETLK 203
           +LR G  +I  L 
Sbjct: 194 VLREGLGDISRLA 206


>gi|221134961|ref|ZP_03561264.1| Sua5/YciO/YrdC/YwlC family protein [Glaciecola sp. HTCC2999]
          Length = 206

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E +  G  +  PT++ Y +     N +A+ ++  I++    +       D+S
Sbjct: 14  ARLIKQAVELIKQGEVVVYPTDSGYSIGCQMDNKSALEQVCRIRELDKTHNFTLMCRDVS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD ++  + K   PGP T V           L     KT   RVP       +
Sbjct: 74  ELSDYARVDNVAFRILKNNTPGPYTFVFKATKEVP-KRLQNPKRKTIGIRVPDNPIALAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   +    G+ +  +    +   + + + LII GG       +T++++  E 
Sbjct: 133 LEELGEPMMSTTLILPGETTAESDPEAIREQLERRVGLIIHGGYLGEH-PTTVIDL-SEG 190

Query: 188 KVRILRPGGLEI 199
           +V ILR G  +I
Sbjct: 191 EVVILREGSGDI 202


>gi|111658251|ref|ZP_01408943.1| hypothetical protein SpneT_02000565 [Streptococcus pneumoniae
           TIGR4]
          Length = 200

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+R     L  +V+ +  + 
Sbjct: 2   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRRRDKALNLNVASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L ++F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 62  YFSKNQPTYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+N+  +K V
Sbjct: 120 ETG-PLIGPSANISGQASGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILNLSGDK-V 175

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 176 KILRQGAIKREDILARL 192


>gi|71279291|ref|YP_270194.1| Sua5/YciO/YrdC/YwlC family protein [Colwellia psychrerythraea 34H]
 gi|71145031|gb|AAZ25504.1| Sua5/YciO/YrdC/YwlC family protein [Colwellia psychrerythraea 34H]
          Length = 206

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 4/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  I  PT++ Y L     +  A+ R+  I+     +       D+S + 
Sbjct: 17  MKQAADIIKQGGVIVYPTDSGYALGCHLGDKKALERICRIRDIDKDHNFTLVCQDLSQIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++  VD  +  L K   PG  T +           L     KT   RVP     + L+  
Sbjct: 77  EYTRVDNTAYRLLKSNTPGAYTFIFKGSKEVP-KRLLNPKKKTIGIRVPDNTIAQALLTE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   S    GQ         +   +  ++ LI++GG       +T+++   +  + 
Sbjct: 136 LAEPIMSTSLIMPGQEMAEYDPEQIRDLLEHQVDLIVNGGYLGEH-PTTVIDFSND-SIE 193

Query: 191 ILRPG 195
           I+R G
Sbjct: 194 IIRVG 198


>gi|145635047|ref|ZP_01790753.1| putative translation factor, SUA5 [Haemophilus influenzae PittAA]
 gi|145267655|gb|EDK07653.1| putative translation factor, SUA5 [Haemophilus influenzae PittAA]
          Length = 207

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIIAIRKLPEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A+V+ ++  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYATVNNIAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           +   G P+   S     +   T +    +   +  ++ LII GG   +G E +T+V++  
Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190

Query: 186 EKKVRILRPGGLEIE 200
           E  V ILR G    +
Sbjct: 191 ELPV-ILREGSGSTD 204


>gi|297793617|ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310528|gb|EFH40952.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 284

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 4/192 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 77  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVLDIKR 136

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A+ + L   L     PGP+T+VL    ++ +       + T   RVP C F +++    
Sbjct: 137 VATTNHLPHGLLDSLLPGPVTIVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           G  LA+ SAN SG  S   VK     ++ +    + DGG+   G   STIV++    K +
Sbjct: 197 GSVLALTSANLSGDRSSVCVKD--FENLWQHCAYVYDGGLLPSGRAGSTIVDLTKAGKYK 254

Query: 191 ILRPGGLEIETL 202
           I+RPG  +  T+
Sbjct: 255 IIRPGSAKQATV 266


>gi|198458321|ref|XP_001360991.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
 gi|198136301|gb|EAL25567.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
          Length = 335

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 9/219 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  + D  AL+ A + L  G  IA+PT+TVYGLA D+ N  AI+R+YEIK R    P+  
Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V++I  ++++     LS  L     PGPLT+V++         L+    K    R+P  
Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTPELSNRFLNPTTSK-IGIRIPDF 233

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G      +  L
Sbjct: 234 QFIRALCSVWHEQPLALTSANRSSAPSSLQVTE--FRSLWPQLGAVFDAGQIGLTEERRL 291

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215
            ST++++       I+R G    +TL+      ++   D
Sbjct: 292 ASTVIDLATPGYYEIVRAGVALKQTLRLVEEYGIKPRKD 330


>gi|86158113|ref|YP_464898.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774624|gb|ABC81461.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 231

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L +G  IA PT+T YG+  D  +  AI R+Y++K+ P  + L     D++
Sbjct: 40  PRVIERAVSALSSGGVIAYPTDTFYGIGCDLFDKRAIERIYQLKQLPRTHELAFICQDLA 99

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + ++A VD  +  + +   PGP T +L   +T  +  L     KT   R+P      +L
Sbjct: 100 EISRYAIVDNAAYRVLRRKVPGPFTFILP--ATRLVPELVLRRQKTVGIRIPDSPIALEL 157

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   GHPL   SA R     + + +  +   +   + LI+D G  +    S+++++   +
Sbjct: 158 VRRLGHPLISTSAARPDGDVLIDARD-IKEELGHGLDLILDAGF-RPAEPSSVIDLSGPE 215

Query: 188 KVRILRPGGLEIETLKR 204
            V ++R G  ++  L  
Sbjct: 216 PV-VVRVGKGDVSDLME 231


>gi|329894513|ref|ZP_08270327.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium IMCC3088]
 gi|328923038|gb|EGG30363.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium IMCC3088]
          Length = 207

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A + + AG  +  PT++ Y L     +  A+  +  I+K    +       D+S
Sbjct: 14  ARLIKQAADIIRAGGIVVYPTDSAYALGCHIGDKRALDTIRRIRKLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +   A VD  +  L K   PGP T +L          L  A  KT   RVP     + L
Sbjct: 74  ELANFARVDNAAYRLLKAATPGPYTFILKATPEVP-RRLLHAKRKTIGLRVPENNIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCE 186
           +     P+   +             + +   +  ++ L+IDGG    GLE +T++++  +
Sbjct: 133 LAELNEPMMSVTLIMPDDEDPLIDPYEIRDLLEHDVDLVIDGGYC--GLEMTTVIDLADD 190

Query: 187 KKVRILRPGG 196
           + V + +  G
Sbjct: 191 EPVLVRQGKG 200


>gi|52548883|gb|AAU82732.1| conserved hypothetical protein [uncultured archaeon GZfos19C7]
          Length = 224

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 11/197 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++ A   +  G  +  PTETVYGL  D+ +  A+R +Y+IK+R    P+   VS   
Sbjct: 6   EDQIKTATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRDLSRPISIAVSSFE 65

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           M+ + A +D     +     PGP+T++L       +  + TA  +    R P       I
Sbjct: 66  MLHEVADIDSECFEIIAELLPGPVTILL--RKKDVVPAILTAASEVVGVRFPDNEIATRI 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICK--EIPLIIDGGISKIGLESTIVNVQC- 185
                P+   SAN SG+   T ++ +      K   + +II+GG  K  + ST+V++   
Sbjct: 124 IKETGPITATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMPSTVVDMSKV 183

Query: 186 ------EKKVRILRPGG 196
                 + +++I R G 
Sbjct: 184 GATANEKGEIKIKRKGA 200


>gi|15900893|ref|NP_345497.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae TIGR4]
 gi|14972495|gb|AAK75137.1| Sua5/YciO/YrdC family protein [Streptococcus pneumoniae TIGR4]
          Length = 199

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 8/197 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+R     L  +V+ +  + 
Sbjct: 1   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRRRDKALNLNVASLEDIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L ++F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 61  YFSKNQPTYLQKLVEIFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S      IL     + + L  D  ++  G +STI+N+  +K V
Sbjct: 119 ETG-PLIGPSANISGQASGVTFNQILEDFDQEVLGLEDDAFLT--GQDSTILNLSGDK-V 174

Query: 190 RILRPGGLEIETLKRAI 206
           +ILR G ++ E +   +
Sbjct: 175 KILRQGAIKREDILARL 191


>gi|116750183|ref|YP_846870.1| Sua5/YciO/YrdC/YwlC family protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699247|gb|ABK18435.1| translation factor SUA5 [Syntrophobacter fumaroxidans MPOB]
          Length = 225

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 6/204 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +++  +  A   L  G  +  PTET YGL  +  +P  +  ++ IKKR     L    S 
Sbjct: 26  SETEVVEAATSLLTRGGIVVYPTETFYGLGGNPLSPATVAAIFAIKKREREKALPLIASG 85

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           I  V++       L+  LA  FWPGPLTL+L   +   + P   A+      RV      
Sbjct: 86  IQAVREWVEEFPALAERLAAAFWPGPLTLIL--RAVHRLPPQVHASTGKIAIRVSSHPVA 143

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L  + G  +   SAN +GQ +   +  I    + +++  +ID G     L STIV+V 
Sbjct: 144 RALAASLGGLIVSTSANFTGQRACRTLAEIPIE-LVRQVDGVIDAGRLPGSLPSTIVDVT 202

Query: 185 CEKKVRILRPGGLEIETLKRAISV 208
               + ++R G +    ++RA ++
Sbjct: 203 GGSPL-LVREGCVPFMEIERAAAL 225


>gi|116671163|ref|YP_832096.1| translation factor SUA5 [Arthrobacter sp. FB24]
 gi|116611272|gb|ABK03996.1| translation factor SUA5 [Arthrobacter sp. FB24]
          Length = 245

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 11/219 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L  A   +     +  PT+TVYG+  D+ +P A+  L   K R    P    +  ++
Sbjct: 14  AEGLENAQRAIRQHKCVVFPTDTVYGIGADAFSPQAVTLLLASKGRSRKMPPPVLIPRLN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +   A  V   +  LA+ FWPG LT++     + D     T    T   R+P     + 
Sbjct: 74  ALDGLATDVPAEARKLAEAFWPGGLTMIFHAQPSLDWDLGETKG--TVALRMPADDVAQD 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG------LESTIV 181
           + T   PLA+ SANR+GQ +       ++  + + + + ++GG+   G      L STIV
Sbjct: 132 LLTLTGPLAVSSANRTGQPAARTAAEAMT-QLAESVEVYLEGGLRPDGDADADALPSTIV 190

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220
           +      +R++R G + +E L+  +   L+   +    P
Sbjct: 191 DATAL-PLRVVRQGAISVERLREVVPGLLDIDGNAADVP 228


>gi|148978490|ref|ZP_01814964.1| Sua5/YciO/YrdC family protein [Vibrionales bacterium SWAT-3]
 gi|145962397|gb|EDK27677.1| Sua5/YciO/YrdC family protein [Vibrionales bacterium SWAT-3]
          Length = 185

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +  +   + L  G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2   DNFQHTLQALHQGEVIAYPTEGVFGVGCDPDNPHAIKKLLELKQRPVEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+       K  WPGP+T ++   +   +    +    +   RV      +
Sbjct: 62  LLPYIDESQLTDEQLATVKATWPGPVTWIMPTSAK--VTDWVSGQFDSLAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   +G PL   SAN +G+      + +    + + +  I++G        S I + + 
Sbjct: 120 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEGKTGGRDKPSEIRDAKT 178

Query: 186 EKKVR 190
            K +R
Sbjct: 179 SKILR 183


>gi|218710991|ref|YP_002418612.1| Sua5/YciO/YrdC family protein [Vibrio splendidus LGP32]
 gi|218324010|emb|CAV20372.1| Sua5/YciO/YrdC family protein [Vibrio splendidus LGP32]
          Length = 189

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +  +   + L  G  IA PTE V+G+  D  NP AI++L ++K+RP    LI   +    
Sbjct: 6   DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPIEKGLILIAASYEQ 65

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+       K  WPGP+T ++    ++ +    +    +   RV      +
Sbjct: 66  LLPYIDESQLTEAQLATVKATWPGPVTWIMPT--SSKVTDWVSGQFDSIAVRVTDHPLVQ 123

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   +G PL   SAN +G+      + +    + + +  I++G        S I + + 
Sbjct: 124 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEGQTGGREKPSEIRDAKT 182

Query: 186 EKKVR 190
            K +R
Sbjct: 183 SKILR 187


>gi|45357749|ref|NP_987306.1| hypothetical protein MMP0186 [Methanococcus maripaludis S2]
 gi|45047309|emb|CAF29742.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 206

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 14/213 (6%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+   I++SN       +  A + +  G  I   T+T+YGL+ ++ +  AI ++Y IK+R
Sbjct: 1   MKTFEISESNLKNCEKEIETAKKMILGGKIILCGTDTLYGLSTNALDKNAIEKIYSIKER 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
               P+   + +   ++ +  VD  +  + + F PGP+T++L      DI P        
Sbjct: 61  DPNKPISISLGEKKQIENYVYVDETAKKIIEKFMPGPITVIL---KKKDIIPDILGKDD- 116

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              R+P     + I     PL   SAN SG+ + T+++ +    I +++ LI+D G  K 
Sbjct: 117 VGVRIPDNDVIRKI--AVVPLTTTSANISGKTAPTSLEEV-DQIIKEKVDLIVDTGPCKY 173

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            ++STIV V  + K+ ++R G +  E + +A++
Sbjct: 174 KVQSTIVKVI-DGKIELIREGKIPFEEILKAVN 205


>gi|195119554|ref|XP_002004296.1| GI19851 [Drosophila mojavensis]
 gi|193909364|gb|EDW08231.1| GI19851 [Drosophila mojavensis]
          Length = 228

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 9/206 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I S    NAL+ A + L  G  IA+PT+TVYGLA D+ N  AI+RLYEIK R    P+  
Sbjct: 11  ICSAESLNALKLAEQCLQLGKVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 70

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V++I+ ++++     LS  L     PGPLT++++         L+ +  K    R+P  
Sbjct: 71  CVNNITALRRYGQASHLSDELLTRLLPGPLTIIVEHTPHLSNRYLNPSTSK-IGIRIPDF 129

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L   +   PLA+ SANRS + S   +      ++  ++  I D G      +  L
Sbjct: 130 QFIRDLCARWHEQPLALTSANRSSEPSSLEIIE--FQALWPQLGAIFDAGRIGQTEERRL 187

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            ST++++       I+R G    +TL
Sbjct: 188 ASTVIDLANPGCYEIVRAGVALKQTL 213


>gi|296104990|ref|YP_003615136.1| putative ribosome maturation factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059449|gb|ADF64187.1| putative ribosome maturation factor [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 200

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A E L     IA PTE V+G+  D  + TA+ RL  +K+RP    LI   ++   +
Sbjct: 19  SIAHAVEVLKNEEVIAYPTEAVFGVGCDPDSETAVNRLLTLKQRPVEKGLILIAANYEQL 78

Query: 71  KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +       P         WPGP+T V     TT      T    +   RV       +
Sbjct: 79  KPYIDDSMLTPAQRDTIFSAWPGPVTFVFPAQPTT--PRWLTGRFDSLAVRVTDHPLVVE 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +G PL   SAN +GQ    + + +L +    + P+ + G        S I +    
Sbjct: 137 LCLAFGKPLVSTSANLTGQPPCRSTEEVL-AQFGNDFPVAV-GETGGRLNPSEIRDALTG 194

Query: 187 KKVR 190
           ++ R
Sbjct: 195 ERFR 198


>gi|295086691|emb|CBK68214.1| translation factor SUA5 [Bacteroides xylanisolvens XB1A]
          Length = 204

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 9/201 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +                ++       + L+IDGGI  I   ST+
Sbjct: 125 IIREIARLLDAPIMTTTLPYEEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           V    + ++ I+R G   +E 
Sbjct: 184 VKCT-DNELEIVRQGKGWLEE 203


>gi|195154030|ref|XP_002017926.1| GL17434 [Drosophila persimilis]
 gi|194113722|gb|EDW35765.1| GL17434 [Drosophila persimilis]
          Length = 335

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 9/219 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  + D  AL+ A + L  G  IA+PT+TVYGLA D+ N  AI+R+YEIK R    P+  
Sbjct: 115 VCQVEDRAALKVARQCLLGGQVIALPTDTVYGLACDANNEHAIQRMYEIKGRDEHKPVAI 174

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V++I  ++++     LS  L     PGPLT+V++         L+    K    R+P  
Sbjct: 175 CVNNIEALRRYGQAAHLSDELLTRLLPGPLTIVIERTHELSNRFLNPTTSK-IGIRIPDF 233

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G      +  L
Sbjct: 234 QFIRALCSVWHEQPLALTSANRSSAPSSLQVTE--FHSLWPQLGAVFDAGQIGLTEERRL 291

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215
            ST++++       I+R G    +TL+      ++   D
Sbjct: 292 ASTVIDLATPGYYEIVRAGVALKQTLRLVEEYGIKPRKD 330


>gi|160873162|ref|YP_001552478.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195]
 gi|212288221|sp|A9KUA7|RIMN_SHEB9 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|160858684|gb|ABX47218.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195]
 gi|315265387|gb|ADT92240.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS678]
          Length = 188

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + +  G  IA PTE VYGL  D  N TAI +L  +K+RP    LI   SD   +  +   
Sbjct: 11  DIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQQLLAYVDE 70

Query: 77  DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132
             L +  L   F  WPGP T V+ + +   +         +   RV      + L     
Sbjct: 71  SQLTAEQLEFAFSKWPGPFTFVMPIKA--QVSKYLCGEFDSIAVRVSAHAGVQALCRALN 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +G+        IL +    +I  ++ G + +    STI++ +  K +R
Sbjct: 129 KPLVSTSANLAGEDPALTAAEIL-ADFTGKIDALVLGELGEQRQPSTIIDARSGKILR 185


>gi|306831309|ref|ZP_07464469.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304426545|gb|EFM29657.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 199

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 8/191 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  + +PTETVYGL   + N  A+  +Y++K+RP    +  +V+D   +   +   
Sbjct: 7   ILQNGGAVILPTETVYGLFAQAMNENAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQ 66

Query: 78  PLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           P  L  L   F PGPLT++L   +   +     + L T  FR+P    T KLI+  G PL
Sbjct: 67  PSYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHSQTLKLIKKAG-PL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SGQ S    K I             D  ++  G++STI+++   K  RILR G
Sbjct: 124 IGPSANISGQESGKVFKEIQKQFGGTVTGFADDAALT--GVDSTILDLSG-KTARILRQG 180

Query: 196 GLEIETLKRAI 206
            +    L   +
Sbjct: 181 AITQNDLLAVV 191


>gi|224826312|ref|ZP_03699414.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002]
 gi|224601413|gb|EEG07594.1| Sua5/YciO/YrdC/YwlC family protein [Lutiella nitroferrum 2002]
          Length = 206

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +R+A + L AG  I  PT++ Y L     +  A+ R+ +I++    + L    +D+S
Sbjct: 14  ARLIREAVKILRAGGVIVYPTDSCYALGCLLGDKAAMERILDIRQLDLKHHLTLVCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD       K   PG  T +L          L      T   RVP       L
Sbjct: 74  ELSNYARVDNSQFRQLKAATPGSYTFILQASKEVPRRTL-HPKRATIGLRVPEHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   + +  G        + +   + +++ L+IDGG       +T++++    
Sbjct: 133 LAELGEPILSCTLSLPGDSEALTDPYEIRERMERQVDLVIDGGWCGT-EPTTVIDLTDG- 190

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 191 -VELVRRG 197


>gi|119487019|ref|ZP_01620891.1| Sua5/YciO/YrdC/YwlC-like protein [Lyngbya sp. PCC 8106]
 gi|119455948|gb|EAW37082.1| Sua5/YciO/YrdC/YwlC-like protein [Lyngbya sp. PCC 8106]
          Length = 248

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 14/205 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K    L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL    S +S
Sbjct: 42  ERTITKVIADLRSGAVMLYPTDTVYAIGCDLTVKSAVERVRQIKQLSNDKPLTFLCSSLS 101

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GFTKK 126
            +  +A+V   +  + K   PG  T +L   +T  +  L  +   KT   RVP   F   
Sbjct: 102 NISDYANVSNQAYRIIKRLIPGSYTFLLP--ATKLVPRLVMSPKRKTTGIRVPDNHFCLA 159

Query: 127 LIETYGHPLAIPSANRSGQIS---ITNVK-------HILSSSICKEIPLIIDGGISKIGL 176
           LIET G+P+   SA+ + +        V          L   + K + +I+D G      
Sbjct: 160 LIETLGNPIISTSAHITNEEEGQAPLAVPRTGNMGKAELFDCLEKLVDIIVDDGSDPGYQ 219

Query: 177 ESTIVNVQCEKKVRILRPGGLEIET 201
            STI+++  ++ + +    G E   
Sbjct: 220 VSTILDLTGDEPILVREGKGWEAAA 244


>gi|167581361|ref|ZP_02374235.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           TXDOH]
          Length = 209

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPAHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LESLGQPLLGTTLILPPDDDPLNDPEEIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGPLE 203


>gi|329904391|ref|ZP_08273785.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547995|gb|EGF32734.1| hypothetical protein IMCC9480_2045 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 207

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  +A+PT++ Y L     +  A+ RL  ++     + L     D++
Sbjct: 14  QRLINQAAEIIHRGGIVAMPTDSSYALVCHLDDKDAVTRLRRLRGVDDKHLLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T++L+         +S  + KT   RVP       L
Sbjct: 74  EIALYAKVDNKQYRLLKAATPGSYTMILEATKEVP-RRISHPSRKTIGLRVPENKIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G          +   I K++ LIIDGG   +   +T+V++  ++
Sbjct: 133 LEQLGQPLLGTTLILPGDEHPLTDAESVRERIEKQVDLIIDGGACSL-EPTTVVDLSGDE 191

Query: 188 KVRILRPGG 196
            V I    G
Sbjct: 192 PVLIRAGRG 200


>gi|15827567|ref|NP_301830.1| hypothetical protein ML1136 [Mycobacterium leprae TN]
 gi|221230044|ref|YP_002503460.1| hypothetical protein MLBr_01136 [Mycobacterium leprae Br4923]
 gi|1176863|sp|P45831|Y1136_MYCLE RecName: Full=Uncharacterized protein ML1136
 gi|699330|gb|AAA63091.1| sua5 [Mycobacterium leprae]
 gi|13093117|emb|CAC31517.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933151|emb|CAR71231.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 220

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 9/212 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           ++    D +     +  A   L  G  + +PT+TVYG+  D+ +  A+  L   K R   
Sbjct: 6   EVFDCADPDQRARGIASAVAALKGGRLVVMPTDTVYGIGADAFDRAAVAALLSAKGRGRD 65

Query: 58  NPLICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V     ++      P  +  L + FWPG L+LV+    +  ++        T  
Sbjct: 66  MPVGVLVGSWHTIEGLVYTMPDGARELIRAFWPGALSLVVVHAPS--LNWDLGDAHGTVM 123

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SAN SGQ +  +V       + + + + +D G S    
Sbjct: 124 LRMPLHSVAIELLCEVGPMAVSSANVSGQPAAVDVDGA-RGQLGELVGVYLDAGPSAQQA 182

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208
            STIV++  E   RILR G + +  +   + V
Sbjct: 183 ASTIVDLT-EATPRILRAGPVSVARIAEVLGV 213


>gi|322411680|gb|EFY02588.1| Sua5/YciO/YrdC family protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 196

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 6/192 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D   + 
Sbjct: 1   MERLASIIESGGALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFDSIL 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             +   P  L  L + F PGPLT++L   +   +     + L T  FR+P       +  
Sbjct: 61  AFSKEQPTYLEKLYQAFLPGPLTVILK--ANDRVPHWINSGLATVGFRLPSHPITAALIQ 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SG+ S      I+     + I    D  ++  G +STI+++  E  V 
Sbjct: 119 KTGPLIGPSANLSGKPSGKVFNQIIQDFDFQVIGYADDPFLT--GKDSTILDLSGESPV- 175

Query: 191 ILRPGGLEIETL 202
           ILR G +  E L
Sbjct: 176 ILRQGAITKEEL 187


>gi|220935185|ref|YP_002514084.1| SUA5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996495|gb|ACL73097.1| SUA5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 205

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +R+A + +  G  I  PT++ Y L     N T + R+  I++    +       D+S
Sbjct: 14  ARLIRQAVDVIRDGGVIVYPTDSCYALGCGIGNKTGMERIRRIRQLDDNHHFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +L          L  A  KT   RVP    T+ L
Sbjct: 74  EIATYAKVDNTAYRLLKNLTPGPYTFLLKATHEVP-RRLQHAKRKTIGLRVPDHAITQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G     +  + +   +   + LI+  G   +   +T+V++  E 
Sbjct: 133 LAELGEPLMSTTLQLPGDHLPLSDPYDIEERLSAHVDLILLAGSCGV-EPTTVVDLVGEV 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-EVVRQG 198


>gi|237714230|ref|ZP_04544711.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408394|ref|ZP_06084941.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647539|ref|ZP_06725118.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a]
 gi|294808576|ref|ZP_06767320.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|298482087|ref|ZP_07000275.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22]
 gi|229445722|gb|EEO51513.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353946|gb|EEZ03039.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637107|gb|EFF55546.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a]
 gi|294444219|gb|EFG12942.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|298271644|gb|EFI13217.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22]
          Length = 204

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 9/201 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            ++++      P+   +                ++       + L+IDGGI  I   ST+
Sbjct: 125 ISREIARLLDAPIMTTTLPYEEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           V    + ++ I+R G   +E 
Sbjct: 184 VKCT-DNELEIVRQGKGWLEE 203


>gi|206576981|ref|YP_002236315.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342]
 gi|288933304|ref|YP_003437363.1| SUA5/yciO/yrdC domain protein [Klebsiella variicola At-22]
 gi|290512106|ref|ZP_06551474.1| ribosome maturation factor rimN [Klebsiella sp. 1_1_55]
 gi|206566039|gb|ACI07815.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae 342]
 gi|288888033|gb|ADC56351.1| SUA5/yciO/yrdC domain protein [Klebsiella variicola At-22]
 gi|289775896|gb|EFD83896.1| ribosome maturation factor rimN [Klebsiella sp. 1_1_55]
          Length = 190

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 69/187 (36%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            S  +  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +  
Sbjct: 6   PSETVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAASF 65

Query: 68  SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +                 WPGP+T V      T      T    +   RV     
Sbjct: 66  EQLKPYVDDSRLSDSQRDAIFSCWPGPVTFVFPARPET--PRWLTGRFDSLAVRVTNHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L E YG PL   SAN +GQ        +  +      P ++DG        S I + 
Sbjct: 124 VIELCEAYGKPLVSTSANLTGQPPCRTTAEV-HAQFGDSFP-VVDGATGGRQNPSEIRDA 181

Query: 184 QCEKKVR 190
              K  R
Sbjct: 182 LTGKLFR 188


>gi|126660837|ref|ZP_01731931.1| hypothetical protein CY0110_27268 [Cyanothece sp. CCY0110]
 gi|126617888|gb|EAZ88663.1| hypothetical protein CY0110_27268 [Cyanothece sp. CCY0110]
          Length = 217

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 10/208 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + + C+ L  G  +  PT+TVY +  D  + +A++R+ ++K+     PL    S +S
Sbjct: 14  PRRIDEICDSLRKGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +  +A V   +  + K   PGP T +L   +T  +  L  +   KT   RVP     + 
Sbjct: 74  NIADYAGVTDEAYRIMKRVIPGPYTFLLP--ATKAVPKLVMSPKRKTTGIRVPDHPICQA 131

Query: 127 LIETYGHPLAIPSANRSGQ----ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++    +P+   SA+   +     +I   K  L   +  ++ +IID  +      STI++
Sbjct: 132 ILTELNNPIISTSAHLPDEEGEFPTIGLEKARLFDILESQVDMIIDNSLEPGFDVSTILD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVEL 210
           +  +    I+R G L  E L+  ++VE+
Sbjct: 192 MTSD-PPSIIRQG-LGWEALQNWVTVEV 217


>gi|306833421|ref|ZP_07466548.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus bovis ATCC
           700338]
 gi|304424191|gb|EFM27330.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus bovis ATCC
           700338]
          Length = 199

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 8/191 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  + +PTETVYGL   + N  A+  +Y++K+RP    +  +V+D   +   +   
Sbjct: 7   ILQNGGAVILPTETVYGLFAQAMNENAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQ 66

Query: 78  PLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135
           P  L  L   F PGPLT++L   +   +     + L T  FR+P    T KLI+  G PL
Sbjct: 67  PSYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SGQ S    K I             D  ++  G++STI+++   K  RILR G
Sbjct: 124 IGPSANISGQESGKVFKEIQKQFGGTVTGFADDAALT--GVDSTILDLSG-KTARILRQG 180

Query: 196 GLEIETLKRAI 206
            +    L   +
Sbjct: 181 AITQNDLLTVV 191


>gi|297243818|ref|ZP_06927748.1| Sua5/YciO/YrdC family translation factor [Gardnerella vaginalis
           AMD]
 gi|296888239|gb|EFH26981.1| Sua5/YciO/YrdC family translation factor [Gardnerella vaginalis
           AMD]
          Length = 228

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 22/228 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L+ A + ++ G  I +PT+TVYG+A D  N  A+ ++YE+K+RP    L
Sbjct: 1   MSKICNINEESLQMAAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKAL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLST---------- 109
              +S +  ++K     P  L +  K F PG  + +      +    L+T          
Sbjct: 61  QILMSGVEDLEKLGLYLPSPLDILGKKFLPGGYSPIARAKKDSVASKLATLCKTNETDEK 120

Query: 110 --------ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161
                   A   T   RVP       I     PLA  SANRSG  S  +V+     +   
Sbjct: 121 TQETETTQAIESTQGVRVPDCPELMQILRVTGPLAASSANRSGNESADSVEEAF-EAFGN 179

Query: 162 EIPLIIDGGISKIGLESTIV--NVQCEKKVRILRPGGLEIETLKRAIS 207
           EIPL ++ G ++  + ST+V  +   +  + ILR G +    ++ A+S
Sbjct: 180 EIPLYLNAGPTRSHVASTVVGADSSDKDGIVILREGVISECEIRNALS 227


>gi|197335779|ref|YP_002155838.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio fischeri MJ11]
 gi|121308593|dbj|BAF43688.1| hypothetical protein [Vibrio fischeri]
 gi|197317269|gb|ACH66716.1| Sua5/YciO/YrdC/YwlC family protein [Vibrio fischeri MJ11]
          Length = 206

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLISQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +           L     KT   RVP       L
Sbjct: 74  ELSIYARVDNSIFRLLKNNTPGAYTFIFKGTKEVP-RRLMNPKRKTIGMRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G     +    +   +   + LI++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGYLGE-QPTTVIDFSDDD 191

Query: 188 KVRILRPGG 196
            ++I R G 
Sbjct: 192 -IKIARVGA 199


>gi|326933011|ref|XP_003212603.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
           [Meleagris gallopavo]
          Length = 243

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 12/199 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L  G  +A+PT+TVYG+A  +++  A+R +Y +K R    PL   + D+  + 
Sbjct: 37  VAAAVGALQQGGLVAVPTDTVYGVACLAQDSRAVRSIYSLKGRNGTKPLAICLGDVENIY 96

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++  V+ +   L +   PGP+TLVL    + +++            R+P   F ++L   
Sbjct: 97  RYCHVN-VPDELLQDLLPGPVTLVLKR--SEELNKDLNPFTSLVGVRIPNHPFIRELARA 153

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQ 184
              PLA+ SAN S Q S   V       +  ++ L++DGG        +  L ST+V++ 
Sbjct: 154 CPGPLALTSANVSSQASTLTVSE--FQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVDLS 211

Query: 185 CEKKVRILRPGGLEIETLK 203
              K  I+RPG     T++
Sbjct: 212 VSGKFTIIRPGCALTSTVE 230


>gi|88810631|ref|ZP_01125888.1| putative translation factor SUA5 [Nitrococcus mobilis Nb-231]
 gi|88792261|gb|EAR23371.1| putative translation factor SUA5 [Nitrococcus mobilis Nb-231]
          Length = 207

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 6/197 (3%)

Query: 3   IMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           I  +T     +R+  E L  G  IA PT+T Y L        A+ R+  ++K    +   
Sbjct: 7   IHPMTPQPRLIRRTAEILQRGGVIAYPTDTAYALGCCMGEREAVERIRRLRKLHERHNFT 66

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
               D+S +  +A V   +  L K   PGP T VL          L     KT   RVP 
Sbjct: 67  LACRDLSDIGTYAKVGNNAFRLLKAHTPGPYTFVLPATGEVP-RRLQHPKRKTIGIRVPD 125

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
                 +    G PL   +     +        ++   I  ++ LIIDGG    GLE ST
Sbjct: 126 SAVANAICAELGAPLMTTTLLLPHEDLPLTDPELIRERIGAQLDLIIDGG--AGGLELST 183

Query: 180 IVNVQCEKKVRILRPGG 196
           ++++  E    I R  G
Sbjct: 184 VIDLTGETPAVIRRGVG 200


>gi|189468028|ref|ZP_03016813.1| hypothetical protein BACINT_04422 [Bacteroides intestinalis DSM
           17393]
 gi|189436292|gb|EDV05277.1| hypothetical protein BACINT_04422 [Bacteroides intestinalis DSM
           17393]
          Length = 204

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 8/197 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQQIVDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S + ++A VD  +  L K   PG  T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNA 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        +       ++       + L+IDGGI      STI
Sbjct: 125 IIQEIARVLDAPIMTTTLPHEEHEDMEYCTDPELIDEKFGDLVDLVIDGGIGGT-ESSTI 183

Query: 181 VNVQCEKKVRILRPGGL 197
           V+    +   + +  G 
Sbjct: 184 VDCTNGETEIVRQGKGW 200


>gi|192360293|ref|YP_001984039.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107]
 gi|190686458|gb|ACE84136.1| Sua5/YciO/YrdC/YwlC family protein [Cellvibrio japonicus Ueda107]
          Length = 233

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 5/179 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  +  +  A+  L  +K+RP    +I   +++  ++   
Sbjct: 57  AANMMRQGGVIAYPTEAVWGLGCNPFDEDAVADLLALKQRPVEKGVILIAANLQQIEPFI 116

Query: 75  S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYG 132
             +D L     K  WPGP+T ++            T    +   RV        L   +G
Sbjct: 117 DHLDDLQRQRLKNTWPGPVTWLVPN--NGLAPHWITGAFPSVALRVTDHPVAAGLCRAFG 174

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
            P+   S N +G+    N+  +       ++  +  G   +    S I ++   + VR 
Sbjct: 175 GPVVSTSCNPAGKPPARNIHEV-RRYFGGQLDAVSSGLAGRRTNPSEIRDLLTGQVVRP 232


>gi|146313348|ref|YP_001178422.1| putative ribosome maturation factor [Enterobacter sp. 638]
 gi|145320224|gb|ABP62371.1| translation factor SUA5 [Enterobacter sp. 638]
          Length = 200

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++ +A + L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   +
Sbjct: 19  SIAQAVDVLKNEEVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVEKGLILIAANFEQL 78

Query: 71  KKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+          WPGP+T V   L +T      T    +   RV       +
Sbjct: 79  KPYIDDSMLTEQQRNTIFSAWPGPVTFVFPALPST--PSWLTGRFDSLAVRVTDHPLVVE 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L ET+G PL   SAN +G       + +L +      P+++ G        S I +    
Sbjct: 137 LCETFGKPLVSTSANLTGLPPCRTSQEVL-AQFGDGFPVVV-GETGGRLNPSEIRDALTG 194

Query: 187 KKVR 190
           ++ R
Sbjct: 195 ERFR 198


>gi|71027715|ref|XP_763501.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350454|gb|EAN31218.1| hypothetical protein, conserved [Theileria parva]
          Length = 454

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 100/208 (48%), Gaps = 10/208 (4%)

Query: 3   IMSITDSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++ +           L   G  IAIPTETVYGLA +     +I R+++IK+RP  +PLI
Sbjct: 62  VITGSPEEIYEICATILREPGGLIAIPTETVYGLAGNIHLDESILRIFKIKERPLDDPLI 121

Query: 62  CHVSDISMVKKHASVDP-----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            HV       ++          + L+LA+ F PGPLT+V     +  +  L T       
Sbjct: 122 VHVHSFLYALRNLYNTNIVESFIVLYLARKFAPGPLTIV--ARRSQAVSALLTNGSDFIA 179

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R P    T KL+E    PLA PSAN+ G IS T  +H+ +    + +  I+D G   IG
Sbjct: 180 VRCPNNQITLKLLEFSEIPLAAPSANKFGHISPTCPEHVKNEFPNENL-HILDDGNCSIG 238

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203
           +ESTI+ V  +       PG  E+  + 
Sbjct: 239 IESTIIKVYSDDNHYYYHPGHTELSNVN 266


>gi|212693543|ref|ZP_03301671.1| hypothetical protein BACDOR_03060 [Bacteroides dorei DSM 17855]
 gi|237708701|ref|ZP_04539182.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724150|ref|ZP_04554631.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265756027|ref|ZP_06090494.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA]
 gi|212663796|gb|EEB24370.1| hypothetical protein BACDOR_03060 [Bacteroides dorei DSM 17855]
 gi|229437338|gb|EEO47415.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457127|gb|EEO62848.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234105|gb|EEZ19706.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA]
          Length = 204

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L +    L+ G  I  PT+T+Y +        AI R+ ++K   P  N L   
Sbjct: 8   KNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD  +  L K   PGP T +L+   T +  P    N K    RVP   
Sbjct: 68  CYDLSNISEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        I       ++     KE+ LIIDGGI  I   STI
Sbjct: 125 IIREICHILKAPIMTTTLPLKDGEDIEYITTPELIEEKFGKEVELIIDGGIGNI-EPSTI 183

Query: 181 VNVQCEKKVRILRPG 195
           VN     +  I+R G
Sbjct: 184 VNCTS-GEAEIVRQG 197


>gi|224368045|ref|YP_002602208.1| hypothetical protein HRM2_09310 [Desulfobacterium autotrophicum
           HRM2]
 gi|223690761|gb|ACN14044.1| conserved hypothetical protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 224

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 6/199 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + +AC+ L AG  +  P + +YG+AVD+ NP AI R++ IK+RP  NP++  ++D S 
Sbjct: 20  DFISRACDILRAGGIVIFPAKCLYGIAVDAFNPEAISRVFGIKQRPRKNPILVLINDRSD 79

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           ++      P +   L   FWPG +T+V + L    +  + TA+      R+P     K +
Sbjct: 80  LEGLVKKVPKTARILMDRFWPGDITIVFEALD--RLPGILTAHTGKIGIRMPQHPVAKAL 137

Query: 129 -ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
               G P+   SAN SG   I+ ++  L   +   + LI+D G  K G  ST+V+V   +
Sbjct: 138 TRGLGKPITGTSANLSGAEGISRIQD-LPPVLVDRVDLILDAGRLKGGKGSTVVDVTG-Q 195

Query: 188 KVRILRPGGLEIETLKRAI 206
           +V +LR G +    +   +
Sbjct: 196 QVLVLREGEIPGAEIHGVL 214


>gi|198276288|ref|ZP_03208819.1| hypothetical protein BACPLE_02480 [Bacteroides plebeius DSM 17135]
 gi|198270730|gb|EDY95000.1| hypothetical protein BACPLE_02480 [Bacteroides plebeius DSM 17135]
          Length = 230

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 9/195 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
                  L++  + L+ G  I  PT+TVY L   +     I R+ ++K   P  N L   
Sbjct: 35  KNNRPEDLQRIVDILNDGGIIIYPTDTVYALGCHALKERPIERICKLKNIDPRKNNLSII 94

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S + ++A V   +  L K   PGP T +L+  S     P    N K    RVP   
Sbjct: 95  CYDLSNISEYARVSNATFKLMKRNLPGPFTFILNADSRL---PKIFRNRKEVGIRVPDNA 151

Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++ +    P+   +        I       ++     +++ LIIDGG   I   ST+
Sbjct: 152 IIREICQLLDAPILTTTLPLEEGEDIEYITEPELIDEKFGEKVDLIIDGGTGGI-EPSTV 210

Query: 181 VNVQCEKKVRILRPG 195
           +N  C+    I+R G
Sbjct: 211 INC-CDDVPEIVRQG 224


>gi|152981334|ref|YP_001352969.1| translation factor (SUA5) [Janthinobacterium sp. Marseille]
 gi|151281411|gb|ABR89821.1| translation factor (SUA5) [Janthinobacterium sp. Marseille]
          Length = 207

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A + +  G  +A+PT++ Y L     +  A+ RL  I+     + L     D+S
Sbjct: 14  ARLISQAVQIVRDGGIVALPTDSCYALVCHLDDKDAVARLRRIRNVDDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     + K   PG  T +L+         LS  + KT   RVP       L
Sbjct: 74  EIALYAKVDNQQYRMLKAATPGAYTFILEATKEVP-RRLSHPSRKTIGLRVPENRIVHAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   +    G+         +   + K + L+IDGG       +T++++   +
Sbjct: 133 LEELAQPLLGTTLILPGEDEPLTDPEDVRDRLNKVVDLVIDGGACSF-EPTTVIDLTSGE 191

Query: 188 KVRILRPGG 196
            V   +  G
Sbjct: 192 PVLQRQGRG 200


>gi|170291088|ref|YP_001737904.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170175168|gb|ACB08221.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 209

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 9/198 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + +  + L  G  I  PT+TVYGL  D+ N  A+RR+YE+K RP    L   VSDI 
Sbjct: 11  ESTIDEVVDALRKGKLIIYPTDTVYGLGADAENIDAVRRVYEVKGRPEEKRLTIAVSDID 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           M +++A VD +S  L + F PG +T +L    T+ +  +          R+P      ++
Sbjct: 71  MAERYAVVDEISRRLMEKFLPGKVTFIL--KKTSRVPDIVNPE--AIGIRIPNIPIILRI 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I  +G  +   SAN+SG           +  I  E  L++D G       STIV++   +
Sbjct: 127 IREFGGAITATSANKSGSP-PKLDPEEAAMEI--EADLLLDYGRLPPSRPSTIVDLTRGE 183

Query: 188 KVRILRPGGLEIETLKRA 205
            V ++R G +    + + 
Sbjct: 184 PV-LVREGDVPFSLVMKE 200


>gi|67920201|ref|ZP_00513721.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501]
 gi|67857685|gb|EAM52924.1| Sua5/YciO/YrdC/YwlC [Crocosphaera watsonii WH 8501]
          Length = 217

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 10/205 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + + C  L  G  +  PT+TVY +  D  + +A++R+ ++K+     PL    S +S + 
Sbjct: 17  IDEICSALRQGAIMLYPTDTVYAIGCDLNSKSAVQRVRQLKQLSNDKPLTFLCSSLSNIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
           K+A V+  +  + K   PGP T +L   +T  +  L  +   K+   RVP     + +++
Sbjct: 77  KYAGVEDEAYRVMKRLIPGPYTFLLP--ATKAVPKLVMSPKRKSTGIRVPDHPICQAILQ 134

Query: 130 TYGHPLAIPSANRSGQ--ISITNVKH--ILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
              +P+   SA+   +     T       L   +  ++ +IID  +      STI+++  
Sbjct: 135 GLENPIVSTSAHLPDEDGEFPTLGLEKVKLFDILENQVDIIIDNSLEPGFEVSTILDMTS 194

Query: 186 EKKVRILRPGGLEIETLKRAISVEL 210
           +    I+R G L  E L+  + +++
Sbjct: 195 D-PPSIIRQG-LGWEELQNWVKLQV 217


>gi|326799831|ref|YP_004317650.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
 gi|326550595|gb|ADZ78980.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium sp. 21]
          Length = 188

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N + +A + L +G  I  PT+T++G+  D+ NP A+ ++Y++K R     LI  + +   
Sbjct: 4   NDINQALQVLKSGGVILYPTDTIWGIGCDATNPEAVDKVYQLKGRSKDKSLIILLDNEHK 63

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +  +   +  ++  L + +   PLT++ D     ++ P   A   +   R+    F ++L
Sbjct: 64  LASYVQEIPDVAYQLIE-YTEKPLTIIYDGAK--NLAPNLVAEDGSIGIRIAKHRFCEQL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQC 185
           I+ +  P+   SAN SG+ S  N    +S  I   +  I++     +     STI+ +  
Sbjct: 121 IQRFRKPIVSTSANISGEPSPKNFLE-ISDEIKNGVDYIVEFEQDDLTPKQASTIMKLDA 179

Query: 186 EKKVRILRP 194
                 +R 
Sbjct: 180 SGAFSFIRR 188


>gi|160886924|ref|ZP_02067927.1| hypothetical protein BACOVA_04938 [Bacteroides ovatus ATCC 8483]
 gi|237721208|ref|ZP_04551689.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293370410|ref|ZP_06616964.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f]
 gi|299148444|ref|ZP_07041506.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23]
 gi|156107335|gb|EDO09080.1| hypothetical protein BACOVA_04938 [Bacteroides ovatus ATCC 8483]
 gi|229449004|gb|EEO54795.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292634558|gb|EFF53093.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f]
 gi|298513205|gb|EFI37092.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23]
          Length = 204

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 9/202 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNIFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +                ++       + L+IDGGI  I   ST+
Sbjct: 125 IIREIARLLDAPIMTTTLPYEEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIETL 202
           V    + ++ I+R G   +E +
Sbjct: 184 VKCT-DDELEIIRQGKGWLEEV 204


>gi|297518505|ref|ZP_06936891.1| hypothetical protein EcolOP_12763 [Escherichia coli OP50]
          Length = 175

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 2/163 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +       D+S
Sbjct: 14  QRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ VD ++  L K   PG  T +L          L     KT   RVP     + L
Sbjct: 74  ELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGMRVPSNPIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           +E  G P+   S    G     +    +   + K++ LII GG
Sbjct: 133 LEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGG 175


>gi|289581382|ref|YP_003479848.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099]
 gi|289530935|gb|ADD05286.1| Sua5/YciO/YrdC/YwlC family protein [Natrialba magadii ATCC 43099]
          Length = 196

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 9/198 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A + +  G  +  PTETVYGL  D+ +P A+ R++E+K R    P+   V  +    
Sbjct: 6   LDRAADAICDGDLVVYPTETVYGLGADALDPDAVERVFEVKGRDRSKPISLAVPSVPAAF 65

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
            +             F PGP+T++   L   ++  + TA       RVP       L E 
Sbjct: 66  DYVRTTERERRFMATFLPGPVTVLCQRLE--NVPDVLTAGEDRVGIRVPDQPTALALCER 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   SAN SG  S+  ++  L   + + +  ++DGG +  G EST+V+   E    
Sbjct: 124 AGTPITATSANVSGAGSVRRLEE-LDDGLRESVAAVLDGGETP-GTESTVVDPSSE---T 178

Query: 191 ILRPGGLEIETLKRAISV 208
           I R G L  + ++   + 
Sbjct: 179 IHRRGAL-ADEIETWFAT 195


>gi|254282932|ref|ZP_04957900.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR51-B]
 gi|219679135|gb|EED35484.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR51-B]
          Length = 208

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 9/201 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  +I   N     + +A   ++ G  I  PT++ Y L     N +A+ R+  I++    
Sbjct: 3   QFFAIHPENPQARLVAQAVTIVNKGGVIVYPTDSAYALGCLLGNKSALERIRRIRQLDDS 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A VD  +  L +   PGP T +L+         L     KT   
Sbjct: 63  HNFTLVCRDLSELGNYARVDNTAYRLIRAHTPGPFTFILEATREVP-KRLQHPKRKTIGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP     + L+     P+   +             + +   +   +  +IDGG    GL
Sbjct: 122 RVPDNAIAQALLAELDAPMMSVTLIMPDDEYPLTDPYDIRDILEHHVDAVIDGGYC--GL 179

Query: 177 EST-IVNVQCEKKVRILRPGG 196
           E T +V++ C+      R  G
Sbjct: 180 EPTSVVDMTCDPPEITRRGLG 200


>gi|55822721|ref|YP_141162.1| Sua5/YciO/YrdC family protein [Streptococcus thermophilus CNRZ1066]
 gi|55738706|gb|AAV62347.1| hypothetical protein, Sua5/YciO/YrdC family protein [Streptococcus
           thermophilus CNRZ1066]
          Length = 201

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E L+ G  + +PTETVYGL   + +  A+  +YE+K RP    +  +V+    +  
Sbjct: 6   KQLRETLNNGEAVVLPTETVYGLFAKALDEKAVDYVYELKNRPRDKAMNLNVASYEDILF 65

Query: 73  HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++   P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++LI+ 
Sbjct: 66  YSKEQPKYLKQLYDAFLPGPLTIIL--KANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL  PSAN+SG+ S  +    + +    ++    D   + +G++STI+++      R
Sbjct: 124 EG-PLIGPSANKSGKESGRHFDD-IRAQFDFQVTGYQDDN-ALLGVDSTILDLSVS-PAR 179

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G +  + L  A+
Sbjct: 180 ILRQGKITKDDLLAAL 195


>gi|42520658|ref|NP_966573.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410398|gb|AAS14507.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 195

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 5/197 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    +   L +  PTETVY LA ++ +  +I ++Y+IKKR    PL   VSDI  + 
Sbjct: 2   VSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLT 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           K A V    + L   F PGP+T +L L +   +         +   R+P       ++  
Sbjct: 62  KIAKVKERYIDLINHFSPGPITYILPLKNNNMLPNEFF--KDSIGIRIPEHPIAISILNK 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   S N SG+ S+      +  SI + + ++I+      G+ESTI+++  E K++
Sbjct: 120 LKVPIVATSTNISGKESVCKAND-IPQSIKQHLSVVIEDDELVSGIESTIIDLT-EDKIK 177

Query: 191 ILRPGGLEIETLKRAIS 207
           +LR G + ++T+  A S
Sbjct: 178 VLREGAISLQTVNNAFS 194


>gi|145298417|ref|YP_001141258.1| hypothetical protein ASA_1410 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851189|gb|ABO89510.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 206

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A + +  G  IA PT++ Y L     +  A+ R+  I++    +       D+S
Sbjct: 14  ARLIGQAVQIIQNGGVIAYPTDSGYALGCQMGDKGALERICRIRRIDPTHDFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PGP T +           L     KT   RVP       L
Sbjct: 74  EISTYAKVDNTAFRLVKGNTPGPYTFIFKATKEVP-RRLMNEKKKTIGIRVPANNIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G          +   + K++ L+++GG       +T+V+   ++
Sbjct: 133 LEALGEPLLSTTLILPGSEMAEFDPEEIFDKLGKQLDLVVNGGYLGE-QPTTVVDFSDDE 191

Query: 188 KVRILRPGG 196
            V   R  G
Sbjct: 192 TVLRRRGAG 200


>gi|317492214|ref|ZP_07950643.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919553|gb|EFV40883.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 206

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +  E L  G  I  PT++ Y L        A+ R+  I+   + +       D+S
Sbjct: 14  SRLISQCVEVLRKGGVIVYPTDSGYALGCMLGEKNAMERICRIRNLDSNHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L +   KT   RVP       L
Sbjct: 74  EISTYAFVDNTAFRLIKNNTPGHYTFILKATKEVP-RRLMSEKRKTIGLRVPSNPIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G     +    +  ++ K + L+I GG       +T++++  + 
Sbjct: 133 LAALGEPLMSTTLMLPGNDFAESDPEEIQDALGKVVDLVIHGGFLGQ-QPTTVIDLTEDS 191

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 192 P-EVVRVGA 199


>gi|160916151|ref|ZP_02078358.1| hypothetical protein EUBDOL_02178 [Eubacterium dolichum DSM 3991]
 gi|158431875|gb|EDP10164.1| hypothetical protein EUBDOL_02178 [Eubacterium dolichum DSM 3991]
          Length = 202

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 8/208 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+ +     + ++   + L     IA PT+TVYGL V   +  A+  L   K RP   P+
Sbjct: 1   METIRYHKED-IQAVVKQLKQKKVIAFPTDTVYGLGV-IYDEEALAALKYSKGRPENKPI 58

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V  ++ +++ A ++  +  LA  F PG  T++L    +  +    T  ++T   R+P
Sbjct: 59  PTMVGSLAQMEEIAVLNEEAKKLAAAFMPGAFTMILKKKDS--VADFVTNGMETIGIRMP 116

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              F  +L+   G P+ + SAN SG+ +      +LS  +   I  I+ G  +   + ST
Sbjct: 117 QDDFVLELLRQVGSPMLVTSANLSGEATGLVDVQVLS-QLDGRIDGIVLGE-AGGKVAST 174

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS 207
           IV++    K++ILR G +    L+ A+ 
Sbjct: 175 IVDMTS-GKLKILREGPISKAMLEAALK 201


>gi|283783533|ref|YP_003374287.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis 409-05]
 gi|283442164|gb|ADB14630.1| Sua5/YciO/YrdC/YwlC family protein [Gardnerella vaginalis 409-05]
          Length = 228

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 22/228 (9%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L+ A + ++ G  I +PT+TVYG+A D  N  A+ ++YE+K+RP    L
Sbjct: 1   MSKICTINEESLQMAAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKAL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLST---------- 109
              +S +  ++K     P  L +  K F PG  + +      +    L+T          
Sbjct: 61  QILMSGVEDLEKLGLYLPSPLDILGKKFLPGGYSPIARAKKDSVASKLATLCKTNETDEK 120

Query: 110 --------ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161
                   A   T   RVP       I     PLA  SANRSG  S  +V+   ++    
Sbjct: 121 TQETETTQAIESTQGVRVPDCPELMQILRVTGPLAASSANRSGNESADSVEEAFAA-FGN 179

Query: 162 EIPLIIDGGISKIGLESTIVNVQCEKK--VRILRPGGLEIETLKRAIS 207
           EIPL ++ G ++  + ST+V      K  + ILR G +    ++ A+S
Sbjct: 180 EIPLYLNAGPTRSHVASTVVGADSNDKDGIVILREGVISECEIRNALS 227


>gi|289624034|ref|ZP_06456988.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289650385|ref|ZP_06481728.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 222

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 87  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LII GGI  I   ST++N+   
Sbjct: 145 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIGGGIGGIS-ASTVINLAGG 203

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 204 EP-EVVRVGC 212


>gi|256825640|ref|YP_003149600.1| Sua5/YciO/YrdC/YwlC family protein [Kytococcus sedentarius DSM
           20547]
 gi|256689033|gb|ACV06835.1| Sua5/YciO/YrdC/YwlC family protein [Kytococcus sedentarius DSM
           20547]
          Length = 440

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 11/223 (4%)

Query: 3   IMSITDS------NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           +   TD        A   A E L  G  I +PT+TVYG+A D  +P  +  +   K+R A
Sbjct: 4   VFDCTDPTDEQRDEAFGAATEALGEGRVIVMPTDTVYGVAADPFHPDGVPNVLAAKQRSA 63

Query: 57  MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P    V  +  V   A S+ P    L +  WPGPLT+V+    +       T    T 
Sbjct: 64  AMPPPVLVPSVRTVDGLATSLQPYVKTLIRELWPGPLTVVVQAQPSLQWDLGETNG--TV 121

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       + T   PLA+ SAN +GQ + T+V    ++ +   + + +DGG +   
Sbjct: 122 ALRMPDHDLALRLLTRTGPLAVTSANVTGQPAATSVLEA-ATQLGSAVEVYLDGGPTAGN 180

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
             STIV+      V ILR G L +E L+  I  ++   +    
Sbjct: 181 RPSTIVDCTRPSPV-ILRLGALSVERLEEVIGPDVHLRLSPAE 222


>gi|224538268|ref|ZP_03678807.1| hypothetical protein BACCELL_03159 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520128|gb|EEF89233.1| hypothetical protein BACCELL_03159 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 204

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 11/196 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQQVVDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S + ++A VD  +  L K   PG  T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNA 124

Query: 123 FTKKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             +++      P+   +        I       ++       + L+IDGGI   G E ST
Sbjct: 125 IIQEIARILDAPIMTTTLPHEAHEDIEYCTDPELIDEKFGDLVDLVIDGGIG--GTEFST 182

Query: 180 IVNVQCEKKVRILRPG 195
           IV+     ++ ++R G
Sbjct: 183 IVDCTS-GEIEVIRQG 197


>gi|212709015|ref|ZP_03317143.1| hypothetical protein PROVALCAL_00047 [Providencia alcalifaciens DSM
           30120]
 gi|212688381|gb|EEB47909.1| hypothetical protein PROVALCAL_00047 [Providencia alcalifaciens DSM
           30120]
          Length = 189

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M    + A++   + L     IA PTE V+GL  D  +  A+ +L  +K+RP    LI  
Sbjct: 1   MQNQSTPAIKNIIKALKQQHVIAYPTEAVFGLGCDPDSEIAVNQLLALKQRPWEKGLILI 60

Query: 64  VSDISMVKKHASVDPL---SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +   +K +     L           WPGP+T V+    TT      T    T   RV 
Sbjct: 61  ADNYEQLKNYVDDSQLNEQQRQAMFATWPGPVTWVIPAKKTT--PKWLTGQFDTLAVRVT 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K L   YG P+   SAN SG       + +++    K+   ++DG +      S 
Sbjct: 119 NHELVKALCSQYGKPIVSTSANLSGLEPCRTTEEVIAQF--KDTVPVLDGDVGGRLNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    +  R
Sbjct: 177 IRDAMTGQLYR 187


>gi|150004545|ref|YP_001299289.1| hypothetical protein BVU_1995 [Bacteroides vulgatus ATCC 8482]
 gi|254882717|ref|ZP_05255427.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643977|ref|ZP_07998552.1| hypothetical protein HMPREF9011_04155 [Bacteroides sp. 3_1_40A]
 gi|149932969|gb|ABR39667.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254835510|gb|EET15819.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384501|gb|EFV65468.1| hypothetical protein HMPREF9011_04155 [Bacteroides sp. 3_1_40A]
          Length = 204

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L +    L+ G  I  PT+T+Y +        AI R+ ++K   P  N L   
Sbjct: 8   KNNNPKDLEEVIRILEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD  +  L K   PGP T +L+   T +  P    N K    RVP   
Sbjct: 68  CYDLSNISEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        I       ++     KE+ LIIDGGI  I   STI
Sbjct: 125 IIREICHILKAPIMTTTLPLKDGEDIEYITTPELIEEKFGKEVELIIDGGIGSI-EPSTI 183

Query: 181 VNVQCEKKVRILRPG 195
           VN     +  I+R G
Sbjct: 184 VNCT-NGEAEIVRQG 197


>gi|255691112|ref|ZP_05414787.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM
           17565]
 gi|260623465|gb|EEX46336.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM
           17565]
          Length = 204

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 79/200 (39%), Gaps = 8/200 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNH 124

Query: 123 FTKKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        +       ++       + L+IDGGI  I   ST+
Sbjct: 125 IIREIARLLDAPIMTTTLPHEENEDLEYITDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIE 200
           V     +   + +  G   E
Sbjct: 184 VKCTENEPEIVRQGKGWLEE 203


>gi|298208805|ref|YP_003716984.1| putative Sua5/yciO/yrdC family protein [Croceibacter atlanticus
           HTCC2559]
 gi|83848732|gb|EAP86601.1| putative Sua5/yciO/yrdC family protein [Croceibacter atlanticus
           HTCC2559]
          Length = 206

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 9/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   +++    L  G  +  PT+TVYGL  D  N +A+ R+ ++K              D
Sbjct: 13  NPKQIKQVVNALRDGALVIYPTDTVYGLGCDISNVSALERIAKLKNVKLEKANFSFICED 72

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S +  +   +D  +  + K   PGP T +L   +     P      KT   RVP     
Sbjct: 73  LSNLSDYVKQIDTRTFKILKRCLPGPYTFILPGNNNL---PNVFKKKKTVGIRVPDNSIC 129

Query: 125 KKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             L+   G+P+   S       I  T    ++     K + ++IDGG     + ST++++
Sbjct: 130 NALVSGLGNPIISTSIRDEDDVIEYTTDPSLILEKWDKHVDIVIDGGYGD-NIASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
             ++   ++R G   +E
Sbjct: 189 TGDE-AEVIREGKGSLE 204


>gi|58696928|ref|ZP_00372427.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225630533|ref|YP_002727324.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi]
 gi|58536842|gb|EAL60054.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592514|gb|ACN95533.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia sp. wRi]
          Length = 195

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 5/197 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    +   L +  PTETVY LA ++ +  +I ++Y+IKKR    PL   VSDI  + 
Sbjct: 2   VSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLT 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           K A V    + L   F PGP+T +L L +   +         +   R+P       ++  
Sbjct: 62  KIAKVKERYIDLINHFSPGPITYILPLKNNNILPNEFF--KDSIGIRIPEHPIAISILNK 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   S N SG+ S+      +  SI + + ++I+      G+ESTI+++  E K++
Sbjct: 120 LKVPIVATSTNISGKESVCKAND-IPQSIKQHLSVVIEDDELVSGIESTIIDLT-EDKIK 177

Query: 191 ILRPGGLEIETLKRAIS 207
           +LR G + ++T+  A S
Sbjct: 178 VLREGAISLQTVNNAFS 194


>gi|328946332|gb|EGG40476.1| Sua5/YciO/YrdC family protein [Streptococcus sanguinis SK1087]
          Length = 196

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L AG    +PTETVYGL   + N  A+ R+YE+K+RP    L  +V+ +  + 
Sbjct: 1   MDKIEKTLAAGGAAVLPTETVYGLFAQALNQEAVERVYELKRRPRDKALNLNVASLEEIY 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
             +   P  L  L + F PGPLT++L   +   +     + ++T  FR+P    T  LI 
Sbjct: 61  AFSKNQPCYLEQLYQAFLPGPLTIILQ--ANDRVPAWINSGMETVGFRIPKHPVTLDLIR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG PL  PSAN SG+ S T+ + I+     +E+  I D   +  G +STI+++  EK +
Sbjct: 119 KYG-PLIGPSANLSGKASGTSFQQIMMD-FQEEVSGIEDDA-ALTGQDSTILDLSGEKAL 175

Query: 190 RILRPGGLEIETL 202
            ILR G +  E +
Sbjct: 176 -ILRQGVITREDI 187


>gi|158285728|ref|XP_308435.3| AGAP007397-PA [Anopheles gambiae str. PEST]
 gi|157020133|gb|EAA04653.3| AGAP007397-PA [Anopheles gambiae str. PEST]
          Length = 272

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 9/210 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++S    +A   A   L AG  IAIPT+TVYGL   + NP AI RLY IK R  + P+ 
Sbjct: 58  KVISTNRKDAKAIAVAKLQAGEVIAIPTDTVYGLTCSANNPEAIHRLYNIKGRHELKPVA 117

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             V+ I  V++    D L+  L    +PG +TLV+   S  + +P     +     R+  
Sbjct: 118 ICVASIEDVRQWGETDHLNDELLGELFPGAVTLVVRRSSKLN-NPALNPGVANIGIRITE 176

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--- 177
             F + + E +  P+A+ SAN+S   S  NV+      +  E+  + DGG   +  E   
Sbjct: 177 NKFIQHVCEAFQQPIALTSANKSSSKSTLNVEE--FKELWGELGAVFDGGQLGLSEEQRA 234

Query: 178 -STIVNVQCEKKVRILRPGGLEIETLKRAI 206
            ST++++   ++ +I+R G + +E + + +
Sbjct: 235 ASTVIDLSEPERYKIIRWG-VSVEKIIKTV 263


>gi|311743974|ref|ZP_07717780.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM
           15272]
 gi|311313104|gb|EFQ83015.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM
           15272]
          Length = 216

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH- 82
            + +PT+TVYG+A +S +P+A+ RL   K R    P    V   + ++  A+  P  L  
Sbjct: 28  LVVVPTDTVYGIAANSFSPSAVARLLAAKGRGRDMPPPVLVGAPTTIEALATDIPSWLRH 87

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
           L    WPGPLT+V     +       T    T   R+P       +     PLA+ SAN 
Sbjct: 88  LIGRHWPGPLTVVCRQQPSLTWDLGDT--HDTVAVRMPDDPVALAVLRDSGPLAVSSANT 145

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           +G  + T V+      +   + + +DGG S+ G  STI++V      RILR G +++ETL
Sbjct: 146 TGAPAATTVEQA-EEMLGDSVAVYLDGGPSRGGTPSTILDVT-AHTPRILRAGAIDLETL 203

Query: 203 KRA 205
              
Sbjct: 204 HEF 206


>gi|227111427|ref|ZP_03825083.1| hypothetical protein PcarbP_00610 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 206

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S
Sbjct: 14  PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP      +L
Sbjct: 74  ELSTYAHVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     +    +   + K++ LII GG S     +T++++  E 
Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQDRLGKQVDLIIHGG-SLGQQPTTVIDLT-ES 190

Query: 188 KVRILRPG 195
             R+ R G
Sbjct: 191 APRVAREG 198


>gi|94499321|ref|ZP_01305859.1| putative translation factor (SUA5) [Oceanobacter sp. RED65]
 gi|94428953|gb|EAT13925.1| putative translation factor (SUA5) [Oceanobacter sp. RED65]
          Length = 207

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 5/205 (2%)

Query: 1   MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +++A + L  G    IPT+  Y LA   ++  A+ R+  I+K    + 
Sbjct: 5   FQIHPETPQPRLVKQAADILKQGGLAVIPTDCAYALACHIQDKQALERVKRIRKLDDKHN 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D++ +  +A VD  +  L K   PG  T +LD         L     K    RV
Sbjct: 65  FTLMCRDLTEISTYAKVDNTAYRLLKNHTPGAFTFILDGTREVP-RRLMHPKRKQIGIRV 123

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       ++E  G PL   S    G     +  + +   +   + L++DGG       +
Sbjct: 124 PDNAIACAIMEELGEPLMTTSLIMPGDTMPLSDPYDIRQMLEHAVDLVVDGGYCGF-EAT 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           T+V++  ++   I R G  ++  L+
Sbjct: 183 TVVDMTGDE-YSITRQGVGQLPELE 206


>gi|149907888|ref|ZP_01896556.1| Sua5/YciO/YrdC/YwlC family protein [Moritella sp. PE36]
 gi|149808894|gb|EDM68825.1| Sua5/YciO/YrdC/YwlC family protein [Moritella sp. PE36]
          Length = 206

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L  G  I  PT++ Y L     +  A+ R+ +I+K    +       D+S
Sbjct: 14  ARLISQAVAILRDGGVIIYPTDSGYALGCHLGDKNALERICKIRKLDKDHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V+  +    K   PGP T +           L     KT   RVP       +
Sbjct: 74  ELSLYARVENQAYRALKNNTPGPFTFIFKGTKEVP-RRLMNPKRKTIGIRVPDNTIALAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+   S    G          +   +  ++ LII+GG     + +T+V+     
Sbjct: 133 LEALGEPMMSTSLILPGNEGAEFDPEAIRDQLENQVELIINGGYLGEQV-TTVVDYSEGD 191

Query: 188 KVRILRPGG 196
            V + +  G
Sbjct: 192 AVIVRQGAG 200


>gi|254251991|ref|ZP_04945309.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158]
 gi|124894600|gb|EAY68480.1| Sua5/YciO/YrdC/YwlC [Burkholderia dolosa AUO158]
          Length = 210

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA+PT++ Y LA    +  A+ R+  I+       L   V D+S
Sbjct: 14  PRLIKQAAEIVSKGGVIAMPTDSSYALACHLDDKDAVERVRRIRGLDEKQHLSLLVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP   +L          LS  + KT   RVP    T  L
Sbjct: 74  ELANFAMVDNRQYRLIKSVTPGPYVFILQATKEVP-RRLSHPSRKTIGLRVPDHAITLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E+ G PL   +          N    + + + K++ L+IDGG       ST++++  ++
Sbjct: 133 LESLGQPLLGTTLILPPDDDPLNDPEDIRARLEKQVDLVIDGGACPR-EPSTVIDLTGDE 191

Query: 188 KVRILRPGGLEIE 200
             +++R G   +E
Sbjct: 192 P-QLVRAGRGALE 203


>gi|271500650|ref|YP_003333675.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech586]
 gi|270344205|gb|ACZ76970.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech586]
          Length = 206

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E L     I  PT++ Y L     +  A+ R+  I++    +       D+S
Sbjct: 14  PRLINQTVEILRKSGVIVYPTDSGYALGCMLEDKAAMERICRIRELDQNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSSYAYVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGMRVPSNPIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     +    +   + K + LII GG       +T++++  + 
Sbjct: 133 LSVLNEPLMSTTLMLPGNDFAESDPEEIQEQLGKRVDLIIHGGFLGQ-QPTTVIDLTEDV 191

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 192 PV-VVREG 198


>gi|149372161|ref|ZP_01891431.1| translation factor [unidentified eubacterium SCB49]
 gi|149354928|gb|EDM43490.1| translation factor [unidentified eubacterium SCB49]
          Length = 205

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 13/207 (6%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPA 56
           + + I D+N     +++    +  G  +  P++TVY L  D  N +A  RL ++K  +P 
Sbjct: 3   EFIKIYDNNPNEKDIKRVVSIIKKGGLVIYPSDTVYALGCDVTNKSAYERLAKLKGVKPE 62

Query: 57  MNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                    D+S +  +   +D  +  L K  +PGP T +L    + +         K  
Sbjct: 63  KANFSIVCEDLSNLSDYVKQIDGTTFKLLKRAFPGPYTFILP---SNNNLTGYFKKKKEV 119

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISK 173
             RVP    T+ +I+  G+P+   S     ++   T    ++     K + +++DGG   
Sbjct: 120 GIRVPDNTITQAIIKELGNPIVSTSIKDEDEVLEYTTDPELIFEKWEKLVDVVVDGGYGD 179

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200
             + STI+++   + V ++R G   +E
Sbjct: 180 -NVASTIIDITSGEPV-LVREGKGSLE 204


>gi|120436667|ref|YP_862353.1| YrdC domain-containing protein [Gramella forsetii KT0803]
 gi|117578817|emb|CAL67286.1| protein containing YrdC domain [Gramella forsetii KT0803]
          Length = 206

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 13/207 (6%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++ I D N     + K  E L  G  I  PT+T+YGL  D  N +A+ ++ +IK     
Sbjct: 3   ELLRIYDENPAPKHINKVVETLRKGGLIIYPTDTIYGLGCDITNVSALEKIAQIKNVKLE 62

Query: 58  NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                    D+S +  +   +D  +  + K   PGP T +L   ++    P      KT 
Sbjct: 63  KANFSFVCEDLSNLSDYVKQIDSSTFKILKRSLPGPYTFILPGGNSL---PNVFKKKKTV 119

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISK 173
             RVP     + ++   G+P+   S     ++   +    ++       + ++IDGG   
Sbjct: 120 GIRVPDNNICRAIVNGLGNPIVSTSIRDEDEVLEYSTDPELIKEKWDHLVDIVIDGGFGD 179

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200
             + ST++++   +   ++R G   I+
Sbjct: 180 -NIASTVIDLTTGEP-EVIREGKGRID 204


>gi|254515167|ref|ZP_05127228.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR5-3]
 gi|219677410|gb|EED33775.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium NOR5-3]
          Length = 208

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +R+A + +  G  I  PT++ Y L     +  A+ R+  I+K    +       D+S
Sbjct: 14  ARLVRQAADIVRGGGVIVYPTDSAYALGCHIGDKAALDRIRRIRKLDDRHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD +   L K + PGP T +L   +      L  +  +T   RVP    T+ L
Sbjct: 74  EIATYARVDNVVYRLLKQYTPGPYTFILKATTEVP-RRLMQSKRRTIGLRVPDNAITQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G        + +   +  E+ L++DGG   +   +T+V++  EK
Sbjct: 133 LGDLGEPLMSVSLIMPGDELPLIDPYEIRELLEHEVDLVVDGGYCGM-EATTVVDLADEK 191

Query: 188 KVRILRPG 195
            + +LR G
Sbjct: 192 PM-LLRAG 198


>gi|16329324|ref|NP_440052.1| hypothetical protein sll0216 [Synechocystis sp. PCC 6803]
 gi|1651805|dbj|BAA16732.1| sll0216 [Synechocystis sp. PCC 6803]
          Length = 210

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 7/200 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +   C+ L  G  +  PT+TVY +  D  +  A++R+ ++K+     PL    S +S
Sbjct: 14  QRTVEMICKSLRQGAIMLYPTDTVYAIGCDLNDKNAVQRVRQLKQLSNNKPLTFLCSSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPC-GFTKK 126
            + ++A V   +  L +   PGP T +L   +T  +  L      KT   RVP     ++
Sbjct: 74  NIAEYAVVADDAYRLMRKLIPGPYTFLLP--ATKQVPKLVVEPKRKTTGIRVPDRPICQE 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++++ G+P+   SA+   Q      +   L     K + +IID         S+I++   
Sbjct: 132 ILQSLGNPIISTSAHLPDQDEFVMAEKAKLFDLFDKLVDIIIDDDREPGYQTSSIIDFT- 190

Query: 186 EKKVRILRPGGLEIETLKRA 205
           +K+ +++R G L  ETL+  
Sbjct: 191 DKEPKVVREG-LGWETLRDL 209


>gi|84393448|ref|ZP_00992205.1| Sua5/YciO/YrdC family protein [Vibrio splendidus 12B01]
 gi|84375964|gb|EAP92854.1| Sua5/YciO/YrdC family protein [Vibrio splendidus 12B01]
          Length = 185

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +  +   + L  G  IA PTE V+G+  D  NP AI++L ++K+RP    LI   +    
Sbjct: 2   DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPMEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+       K  WPGP+T ++    ++ +    +   ++   RV      +
Sbjct: 62  LLPYIDESQLTEAQLATVKATWPGPVTWIMPT--SSKVTDWVSGQFESIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   +G PL   SAN +G+      + +    + + +  I++G        S I + + 
Sbjct: 120 RMCNEFGKPLTSTSANLTGEPPCMTTEEV-QQQLGQHLVAILEGQTGGREKPSEIRDAKT 178

Query: 186 EKKVR 190
            K +R
Sbjct: 179 SKILR 183


>gi|153807484|ref|ZP_01960152.1| hypothetical protein BACCAC_01764 [Bacteroides caccae ATCC 43185]
 gi|149129846|gb|EDM21058.1| hypothetical protein BACCAC_01764 [Bacteroides caccae ATCC 43185]
          Length = 204

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 8/200 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIIDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNVFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPNNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        +       ++       + L+IDGGI  I   ST+
Sbjct: 125 IIREIARLLDAPIMTTTLPYDEDEDLEYITDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIE 200
           V    ++   + +  G   E
Sbjct: 184 VKCTEDEPEIVRQGKGWLEE 203


>gi|219872045|ref|YP_002476420.1| putative translation factor (SUA5) [Haemophilus parasuis SH0165]
 gi|219692249|gb|ACL33472.1| putative translation factor (SUA5) [Haemophilus parasuis SH0165]
          Length = 206

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E +  G  I  PT++ Y L     +  A+ R+  I++ P  +      SD+S
Sbjct: 14  QRLINQAVEIIKNGGVIVYPTDSGYALGCAIGDKHAMDRIVAIRRLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   S  L K   P P T +L   +T D+        KT   RVP       L
Sbjct: 74  ELSTYALVTNQSYRLIKNNVPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPNNVIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S     +    +    +   +   + LII GG       +T++++  + 
Sbjct: 132 ISALGEPILSCSLILPNEAITQSDPDEIREHLEHHVDLIIHGGYLGQS-PTTVIDLTQDS 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 P-EIIRVG 197


>gi|227326053|ref|ZP_03830077.1| hypothetical protein PcarcW_01496 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 206

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S
Sbjct: 14  PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP      +L
Sbjct: 74  ELSTYAHVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     +    +   + K++ L+I GG S     +T++++  E 
Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQERLGKQVDLVIHGG-SLGQQPTTVIDLT-ES 190

Query: 188 KVRILRPG 195
             R+ R G
Sbjct: 191 VPRVAREG 198


>gi|53712278|ref|YP_098270.1| hypothetical protein BF0986 [Bacteroides fragilis YCH46]
 gi|60680456|ref|YP_210600.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis NCTC
           9343]
 gi|253563683|ref|ZP_04841140.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762469|ref|ZP_06091037.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52215143|dbj|BAD47736.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60491890|emb|CAH06649.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis NCTC
           9343]
 gi|251947459|gb|EES87741.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255077|gb|EEZ26423.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 204

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 9/201 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNIFKLMKRNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNS 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        I       ++   +   + L+IDGGI  I   ST+
Sbjct: 125 IIREIARLLDAPIMTTTLPHDEHEDIEYVTDPELIDEKLGDVVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           VN   E +  I+R G  E+E 
Sbjct: 184 VNCT-EGEAAIVRQGKGELEE 203


>gi|251788008|ref|YP_003002729.1| SUA5/yciO/yrdC domain-containing protein [Dickeya zeae Ech1591]
 gi|247536629|gb|ACT05250.1| SUA5/yciO/yrdC domain protein [Dickeya zeae Ech1591]
          Length = 190

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 11/197 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +MS  +S  L    + L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI 
Sbjct: 1   MMSNVNSEELTLLLKQLREERVIAYPTEAVFGLGCDPDSEMAVERLLALKQRPREKGLIL 60

Query: 63  HVSDISMVKKHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             +D   ++ +     +           WPGP+T V+   + T      T    +   RV
Sbjct: 61  IAADFRQLEPYVEMAALSDAQRQTIFTTWPGPVTWVIP--AKTSTPDWLTGRFNSLAVRV 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 ++L   +G PL   SAN +GQ     V  ++     +  P +++G +      S
Sbjct: 119 SDHPLVRQLCLAFGKPLVSTSANLTGQPPCRTVSEVVR-QFGEGFP-VLNGCVGGRLNPS 176

Query: 179 TIVNVQCEKKVRILRPG 195
            I +        +LR G
Sbjct: 177 EIRDALTG---EMLRQG 190


>gi|319897336|ref|YP_004135532.1| translation factor sua5 [Haemophilus influenzae F3031]
 gi|317432841|emb|CBY81206.1| conserved protein, putative translation factor SUA5 [Haemophilus
           influenzae F3031]
          Length = 207

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 7/193 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+  I+K    +      SD+S
Sbjct: 14  ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLSEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V+  +  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYARVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           +   G P+   S     +   T +    +   +  ++ LII GG   +G E +T+V++  
Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQELTTVVDLTE 190

Query: 186 EKKVRILRPGGLE 198
           E  V ILR G   
Sbjct: 191 ESPV-ILREGSGS 202


>gi|76787929|ref|YP_329782.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae A909]
 gi|77405491|ref|ZP_00782583.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae H36B]
 gi|77408673|ref|ZP_00785406.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae COH1]
 gi|76562986|gb|ABA45570.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae A909]
 gi|77172721|gb|EAO75857.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae COH1]
 gi|77175888|gb|EAO78665.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae H36B]
          Length = 198

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 6/191 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L+    + +PTETVYG+   + +  A+  +YE+KKRP    +  ++ D   + K++  
Sbjct: 6   QILEDHGAVIMPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNICDFETILKYSKN 65

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            P  L  L   F PGPLT++L+  ++ ++     + L +  FR+P       +     PL
Sbjct: 66  QPTYLKQLYDAFLPGPLTIILE--ASQEVPDWINSGLSSVGFRMPKHPVTLDMIANHGPL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SG  S       +      ++  I D   +  G++STI+++  + +V+ILR G
Sbjct: 124 IGPSANISGCDSGRVFSE-IQKQFNHQVLGIEDD-KALTGVDSTIIDLSGD-RVKILRQG 180

Query: 196 GLEIETLKRAI 206
            +  E L   I
Sbjct: 181 AITQEVLTATI 191


>gi|119471686|ref|ZP_01614071.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonadales bacterium
           TW-7]
 gi|119445465|gb|EAW26752.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonadales bacterium
           TW-7]
          Length = 187

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 7/180 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L+ G  I  PTE V+GL  D  N  A+ +L  IK+RP    LI    +   + K+ 
Sbjct: 10  ALTCLNEGEVIVYPTEAVFGLGCDPDNQHAVEKLLAIKQRPVEKGLILIADNYGQLLKYV 69

Query: 75  SVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
               + +   A +F  WP  +T V+    +T      T    T   RV      K+L + 
Sbjct: 70  DDAKVPMDKRADIFSSWPAAITWVMPAAKST--PKWLTGQFDTIAVRVTNHPTVKRLCQE 127

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PL   SAN +GQ ++ +++         ++   +D  +      STI +    K  R
Sbjct: 128 FGKPLVSTSANLTGQETVISIEQA-KEQFADQVGFYVDEPLGGNTQPSTIKDAMTGKVFR 186


>gi|330866210|gb|EGH00919.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 209

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LII GGI  I   ST++N+   
Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIGGGIGGIS-ASTVINLAGG 190

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 191 EP-EVVRVGC 199


>gi|301161990|emb|CBW21534.1| putative Sua5/yciO/yrdC family protein [Bacteroides fragilis 638R]
          Length = 204

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 9/201 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK+  P  N L   
Sbjct: 8   KNNNPQDLQRIVDLLNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKEIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S + ++A VD     L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNIFKLMKRNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNS 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQISIT--NVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        I       ++   +   + L+IDGGI  I   ST+
Sbjct: 125 IIREIARLLDAPIMTTTLPYDEHEDIEYVTDPELIDEKLGDVVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           VN   E +  I+R G  E+E 
Sbjct: 184 VNCT-EGEAVIVRQGKGELEE 203


>gi|24371637|ref|NP_715679.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1]
 gi|81464359|sp|Q8EKQ3|RIMN_SHEON RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|24345396|gb|AAN53124.1|AE015455_5 Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1]
          Length = 188

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + +  G  IA PTE VYGL  D  N TAI++L  +K+RP    LI   S+ S +  +   
Sbjct: 11  DVVLNGGVIAYPTEAVYGLGCDPDNDTAIQKLLAVKQRPWQKGLILVASEFSQLLAYVDE 70

Query: 77  DPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
             L+    +L    WPGP T V+ +     +         +   RV      + L +  G
Sbjct: 71  SQLTDEQLELAFSKWPGPFTFVMPIKPH--VSRYLCGEFDSIAVRVSAHEGVRALCQALG 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN +G+    +   IL+     +I  ++ G + +    STI++ +  K +R
Sbjct: 129 KPLVSTSANLAGEDPALSGDEILN-VFEGKIDALVLGQLGEQRQPSTIIDARSGKILR 185


>gi|94265014|ref|ZP_01288783.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
 gi|93454503|gb|EAT04788.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
          Length = 208

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A PTET YGLAVD  NP A++RL+  K+RPA  P++  V+   M+    S  P +
Sbjct: 25  EGGLVAFPTETYYGLAVDPFNPVALKRLFTAKQRPAQKPILNLVATQQMLPTLVSRVPEA 84

Query: 81  LH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
              L   FWPGPLTL+       ++    TAN  T   R+      + L    G P+   
Sbjct: 85  YRELMAAFWPGPLTLIFPARP--ELPAALTANSGTVGVRISSHPLAQALAAACGGPITAT 142

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ +  +    + +     I LI+DGGI+  G  ST+V +  ++++R++R G + 
Sbjct: 143 SANLSGRAAAVSAA-EVEAQFGSGIDLILDGGITPGGTGSTLVGL-VDEELRLIREGVVP 200

Query: 199 I 199
           +
Sbjct: 201 V 201


>gi|268593577|ref|ZP_06127798.1| protein RimN [Providencia rettgeri DSM 1131]
 gi|291310854|gb|EFE51307.1| protein RimN [Providencia rettgeri DSM 1131]
          Length = 189

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 78/191 (40%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS   + A+      L     IA PTE V+GL  D  + TA+ +L E+K+RP    LI  
Sbjct: 1   MSNISTPAIESIISSLQHEEVIAYPTEAVFGLGCDPDSETAVYKLLELKQRPWEKGLILI 60

Query: 64  VSDISMVKKHASVDPLSL---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                 +K +   + L+          WPGP+T V+   +        T    T   RV 
Sbjct: 61  ADSYEQLKDYIDDEQLTEEQKQAMFATWPGPVTWVIP--AKVTTPKWLTGRFDTIAVRVT 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                KKL   YG PL   SAN SG       + ++ +     IP ++DG +      S 
Sbjct: 119 DHELVKKLCRHYGKPLVSTSANLSGLEPCRTTEEVI-AQFNGGIP-VLDGMVGGRQNPSE 176

Query: 180 IVNVQCEKKVR 190
           I + +  +  R
Sbjct: 177 IRDAKTGQLYR 187


>gi|91791398|ref|YP_561049.1| SUA5/yciO/yrdC-like protein [Shewanella denitrificans OS217]
 gi|123357281|sp|Q12TA0|RIMN_SHEDO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|91713400|gb|ABE53326.1| translation factor SUA5 [Shewanella denitrificans OS217]
          Length = 188

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 7/177 (3%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            +  G  IA PTE VYGL  D  N  AI +L  +K+RP    LI   S    +  +  V 
Sbjct: 12  VIAQGGVIAYPTEAVYGLGCDPDNDQAIEKLLAVKQRPWQKGLILVASSFEQLLPYVDVA 71

Query: 78  PLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            L+   L  A   WPGP T V+ + S   +         +   RV      ++L ++   
Sbjct: 72  QLTQAQLDFAHSKWPGPFTFVMPVKSH--VSNKLRGEFDSIAVRVSAHPIVRELCDSLNK 129

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           PL   SAN +GQ  +   + IL+     +I  ++ G + +    STI++ +    +R
Sbjct: 130 PLVSTSANLAGQDPVLTSRQILTD-FADKIDALVLGDLGQQAQPSTIIDARSGLVLR 185


>gi|291617617|ref|YP_003520359.1| YciO [Pantoea ananatis LMG 20103]
 gi|291152647|gb|ADD77231.1| YciO [Pantoea ananatis LMG 20103]
 gi|327394045|dbj|BAK11467.1| protein YciO [Pantoea ananatis AJ13355]
          Length = 206

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E+L+ G  I  PT++ Y L        A+ R+  I++    +       D+S
Sbjct: 14  PRLINQAVEYLNKGGVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ V   +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSVYSQVGNSAFRLLKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +  SI K + LIIDGG +     +T++++  + 
Sbjct: 133 LEALNEPMMSTSLILPGNDFTESDPEDIQHSIGKLVDLIIDGG-TLGQQPTTVIDLTSDA 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-EVVREG 198


>gi|52550560|gb|AAU84409.1| putative translation factor [uncultured archaeon GZfos9E5]
          Length = 222

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 9/195 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++ A   +  G  +  PTETVYGL  D+ +  A+R +Y+IK+R    P+   VS   
Sbjct: 6   EDQIKTATAIIKNGGMVVYPTETVYGLGADAFSEAAVRNVYKIKRRAVTQPISIAVSSFE 65

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           M+ + A +D     +     PGP+T++        +  + TA  +    R P       I
Sbjct: 66  MLHEVADIDFECFEIIAELLPGPVTILF--KKKDIVPAILTAASEVVGVRFPDNEIVTRI 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICK--EIPLIIDGGISKIGLESTIVNVQCE 186
                P+   SAN SG+   T ++ +      K   + +II+GG  K  + ST+V++   
Sbjct: 124 IKETGPITATSANVSGRNPPTCIEEVEVELKLKVELLGIIINGGKCKYSMPSTVVDMSKA 183

Query: 187 -----KKVRILRPGG 196
                +++ I R G 
Sbjct: 184 TANEKREIEIKRKGA 198


>gi|42573748|ref|NP_974970.1| yrdC protein-related [Arabidopsis thaliana]
 gi|332009969|gb|AED97352.1| DHBP synthase RibB-like alpha/beta domain-containing protein
           [Arabidopsis thaliana]
          Length = 288

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 77  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A+   L   L     PGP+TLVL    ++ +       + T   RVP C F +++    
Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 196

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           G  LA+ SAN SG  S   VK     ++ +    + DGG+   G   STIV++    K +
Sbjct: 197 GSVLALTSANLSGDRSSVCVKD--FENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYK 254

Query: 191 ILRPGGLEIETLK 203
           I+RPG  +  T+ 
Sbjct: 255 IIRPGSAKQATVA 267


>gi|322373124|ref|ZP_08047660.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C150]
 gi|321278166|gb|EFX55235.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus sp. C150]
          Length = 201

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 8/192 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             L  G  + +PTETVYGL   + +  A+  +YE+K RP    +  +V+    +  ++  
Sbjct: 10  AILANGGAVVLPTETVYGLFARALDEKAVNHVYELKNRPRDKAMNLNVASYEDILTYSKE 69

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++LI+  G P
Sbjct: 70  QPDYLKKLYDAFLPGPLTIIL--KANGQVPKWINSGLATVGFRLPNHPVTRELIQAEG-P 126

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN+SG  S     H + +    ++    D   + +GL+STI+++  +   RILR 
Sbjct: 127 LIGPSANKSGMASGRYFDH-IRAQFDFQVTGYQDDD-ALLGLDSTILDL-SDTPARILRQ 183

Query: 195 GGLEIETLKRAI 206
           G +  + L  A+
Sbjct: 184 GKITKDDLLAAL 195


>gi|332880171|ref|ZP_08447853.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332681930|gb|EGJ54845.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 189

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +     +R+A E +  G  I  PT+T++G+  D+ N  A+RR+Y+IKKR     LIC V 
Sbjct: 1   MNKEEDIRQAVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
               ++++   V  ++  L + +   PLT++ D     ++ P   A   +   RV    F
Sbjct: 61  SDHRLQRYVSDVPNVAWDLIE-YATRPLTIIFD--KAKNLAPNLLAEDGSVGIRVTREEF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTIV 181
           +++L   +   +   SAN SG+ S       +S  I   +  I+     +    + S+I+
Sbjct: 118 SRQLCYRFQKAVVSTSANVSGEPSPACFDD-ISDEIKNAVDYIVQSRRKEKTKAVPSSII 176

Query: 182 NVQCEKKVRILR 193
            +  + +V I+R
Sbjct: 177 KLGSDGEVAIIR 188


>gi|189461153|ref|ZP_03009938.1| hypothetical protein BACCOP_01800 [Bacteroides coprocola DSM 17136]
 gi|189432132|gb|EDV01117.1| hypothetical protein BACCOP_01800 [Bacteroides coprocola DSM 17136]
          Length = 203

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 9/201 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              DS+ L+   + L+ G  I  PT+T+Y +   +     I R+ ++K   P  N L   
Sbjct: 8   KNNDSDVLQHIVDILNDGGIIIYPTDTMYAMGCHALKERPIERICKLKNIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A V   +  L K   PGP T VL+  S     P    N K    RVP   
Sbjct: 68  CCDLSNISEYARVSNATFKLMKRNLPGPFTFVLNADSRL---PKIFRNRKEVGIRVPDNN 124

Query: 123 FTKKLIETYGHPLAIPSAN--RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        +       ++      E+ L+IDGGI  +   ST+
Sbjct: 125 IIREICHLLDAPILTTTLPLNPDEDVEYVTDPELIDEKFGSEVDLVIDGGIGGV-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIET 201
           +N  CE    I+R G   +E 
Sbjct: 184 INC-CEDVPEIIRQGKGVLEE 203


>gi|15679686|ref|NP_276803.1| hypothetical protein MTH1692 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|22218836|pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
           Methanobacterium Thermoautotrophicum
 gi|2622823|gb|AAB86164.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 208

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 10/206 (4%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M I  IT      + L +A   ++ G  +  PT+T+YGL V++ +  A+RRL+ +K R  
Sbjct: 1   MLIRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P+   VS +  + + +     ++ L +   PGP T+VL+      I  + T       
Sbjct: 61  HKPVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLER--NELIPDVITGGSSRVG 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            RVP     + I     P+   SAN SG+     ++ I+       + L++D G      
Sbjct: 119 IRVPDDEICRRI-AARFPVTATSANISGKPPSPRLEEIVRDL--DAVDLVLDAGDCLDME 175

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            ST++++      R+LR G   ++ +
Sbjct: 176 PSTVIDLTVN-PPRVLRRGKGPLDPV 200


>gi|71738162|ref|YP_275690.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558715|gb|AAZ37926.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 209

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+   
Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 190

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 191 EP-EVVRVGC 199


>gi|256811084|ref|YP_003128453.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens
           AG86]
 gi|256794284|gb|ACV24953.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus fervens
           AG86]
          Length = 207

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 16/211 (7%)

Query: 2   QIMSIT--DSNALRKACEFLD----AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
           +I+ I   D N  +K   FL      G  I   T+T+YG++ ++ +  A++++Y+IKKR 
Sbjct: 5   KIIKIYEFDENERKKILNFLKEELLNGKIIICGTDTLYGISANALDENAVKKVYKIKKRD 64

Query: 56  AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
              PL   V +   ++K+A V+ L+  +   F PGPLT++L       I P   A     
Sbjct: 65  FNKPLSICVKNKEEIEKYAYVNDLAKKIIDEFLPGPLTIIL---KKKPIIPDIVAK-DYI 120

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             R+P     ++L      PL   SAN SG+ S T V+ I    + K++  ++D G  K 
Sbjct: 121 GIRIPDEAIIREL---SIVPLTTTSANISGEKSPTAVEEINPEIL-KKVDYVVDIGKCKY 176

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA 205
              STI+ ++ + K+  +R G + I  +K  
Sbjct: 177 SKPSTIIKIE-DNKIIPIREGAIPISKIKEM 206


>gi|147919401|ref|YP_686860.1| YrdC family translation factor [uncultured methanogenic archaeon
           RC-I]
 gi|110622256|emb|CAJ37534.1| putative translation factor (YrdC family) [uncultured methanogenic
           archaeon RC-I]
          Length = 192

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 13/195 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +  A + +  G  IA PTETVYG+   + +  AI R++++K+RP   PL   VS I M
Sbjct: 5   TDIGLAADIILKGGVIAYPTETVYGIGALATDVKAISRVFKVKRRPESMPLSIAVSSIEM 64

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           +++ A +        + F PGP+T++L       +    TA       R P       + 
Sbjct: 65  LQEVAEIVH--PDFIEKFLPGPVTVILRKKPV--LPDSLTAGSDYVGIRFPDHPVALDLI 120

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   SAN  G+        +        +  +++GG +K    STIV+++   + 
Sbjct: 121 RRTGPIVSTSANLHGEPDPVTADEVTVE-----VDYLLEGGRAKYAGSSTIVDLR---EY 172

Query: 190 RILRPGGLEIETLKR 204
           ++LR G +  + ++ 
Sbjct: 173 KVLRKGAM-YDEVEE 186


>gi|332993793|gb|AEF03848.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas sp. SN2]
          Length = 206

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +ACE +  G  +  PT++ Y +     +  A+ +L  I+     +       D+S
Sbjct: 14  QRLLNQACELIREGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRDIGKDHNFTLMCRDMS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +    K   PG  T VL          L     KT   RVP       L
Sbjct: 74  ELSIYAKVDNTAFRQIKNNTPGSYTFVLKATREVP-KRLQNPKRKTIGIRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +ET G PL   S    G     +   ++  ++ K++ +II GG       +T++++  + 
Sbjct: 133 LETLGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGVIIHGGYLGE-QPTTVIDLSEDT 191

Query: 188 KVRILRPGG 196
            V + R  G
Sbjct: 192 PVIMRRGTG 200


>gi|94269403|ref|ZP_01291453.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
 gi|93451234|gb|EAT02135.1| Sua5/YciO/YrdC/YwlC [delta proteobacterium MLMS-1]
          Length = 212

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 6/181 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A PTET YGLAVD  NP A++RL+  K+RPA  P++  V+   M+    S  P +
Sbjct: 29  EGGLVAFPTETYYGLAVDPFNPVALKRLFTAKQRPAQKPILNLVATQQMLPTLVSRVPEA 88

Query: 81  LH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
              L   FWPGPLTL+       ++    TAN  T   R+      + L    G P+   
Sbjct: 89  YRELMAAFWPGPLTLIFPARP--ELPAALTANSGTVGVRISSHPLAQALAAACGGPITAT 146

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG+ +  +    + +     I LI+DGGI+  G  ST+V +  ++++R++R G + 
Sbjct: 147 SANLSGRAAAVSAA-EVEAQFGSGIDLILDGGITPGGTGSTLVGL-VDEELRLIREGVVP 204

Query: 199 I 199
           +
Sbjct: 205 V 205


>gi|269836450|ref|YP_003318678.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269785713|gb|ACZ37856.1| Sua5/YciO/YrdC/YwlC family protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 216

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +++   D      A + L  G  I  PT+TVYG+A    +P A+ RLY +K RP   P+ 
Sbjct: 8   RLIPGDDPGVPAAAADVLARGGLIVFPTDTVYGVAAAVDHPEAVARLYHVKGRPLDRPIP 67

Query: 62  CHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             VSD+  V +    VDPL L L + FWPG LT+ +       +      +      R+P
Sbjct: 68  VLVSDLDQVPRLTGEVDPLVLDLLQRFWPGALTVAVPAAPW--LPREIVRDTGRVGLRMP 125

Query: 121 CGFTKKLIETYGHPLA-IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  I           SANRSG+           +++   + LIIDGG +  G+ ST
Sbjct: 126 DHPLALAIIAAAGGALATTSANRSGEPETRTAAEA-DAALGDRVDLIIDGGPAPGGVPST 184

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205
           ++ V   +++ + R G L+ E + RA
Sbjct: 185 VL-VVDGRRLTVTRRGALDPEEIVRA 209


>gi|238896779|ref|YP_002921524.1| putative ribosome maturation factor [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238549106|dbj|BAH65457.1| putative RNA-binding protein with unique protein fold [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 205

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            S A+  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +  
Sbjct: 21  PSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASF 80

Query: 68  SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +                 WPGP+T V      T      T    +   RV     
Sbjct: 81  EQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPET--PRWLTGRFDSLAVRVTNHPL 138

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L E YG PL   SAN +GQ        +  +      P ++DG        S I + 
Sbjct: 139 VIELCEAYGKPLVSTSANLTGQPPCRTTAEV-HAQFGDSFP-VVDGATGGRQNPSEIRDA 196

Query: 184 QCEKKVR 190
              +  R
Sbjct: 197 LTGELFR 203


>gi|229818488|ref|ZP_04448769.1| hypothetical protein BIFANG_03796 [Bifidobacterium angulatum DSM
           20098]
 gi|229784358|gb|EEP20472.1| hypothetical protein BIFANG_03796 [Bifidobacterium angulatum DSM
           20098]
          Length = 225

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 9/213 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ +ITD + L +A   +  G  I IPT+TVYG+A D RN  AI+R+Y+ K RP    L 
Sbjct: 9   EVRAITDES-LAQAAAIVRGGGVIVIPTDTVYGIACDPRNAEAIQRIYQAKHRPQFKALQ 67

Query: 62  CHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117
             ++ I  +       P  L  LA  F PG   P+ L     +   +    T  + T   
Sbjct: 68  VLLASIDDIDSLGLDLPAPLNRLAAAFMPGAFSPIALARPDCTLATVRKTPTGTM-TQGV 126

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       I     PLA  SANRSG  S   V+  + + +   + L +DGG +   + 
Sbjct: 127 RIPNSTASLRILRATGPLAASSANRSGGESAQTVQEAVQA-LGDSVDLYLDGGATPGHVS 185

Query: 178 STIV--NVQCEKKVRILRPGGLEIETLKRAISV 208
           ST+V  +      + ILR G +    + +A+ +
Sbjct: 186 STVVEADPHSRDGIAILREGIIGQNAIHQALHI 218


>gi|284053293|ref|ZP_06383503.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira platensis str.
           Paraca]
          Length = 275

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 13/199 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L  G  +  PT+TVY +  D    +A++++ +IK+     PL    S +S + 
Sbjct: 70  IEQINDALKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIA 129

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
            +A V   +    K   PG  T VL   +T  +  L  +   KT   RVP       ++E
Sbjct: 130 DYAIVTDEAYRTIKKLIPGSYTFVLP--ATKQVPKLVMSPKRKTTGIRVPDHPVCLAILE 187

Query: 130 TYGHPLAIPSANRSGQISIT---------NVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           + G+P+   SA+   +   +           K  L  ++   + +I+D G       STI
Sbjct: 188 SLGNPVISTSAHIKEEDEPSALIRKIPQNYDKFQLFDALENLVDIIVDDGADLDYQVSTI 247

Query: 181 VNVQCEKKVRILRPGGLEI 199
           +++  +  V + R  G E 
Sbjct: 248 IDLSADDPVLVRRGKGWEA 266


>gi|320096084|ref|ZP_08027684.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976964|gb|EFW08707.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 228

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 89/212 (41%), Gaps = 5/212 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L KA     +G  + IPT+TVYG+  D+ NP A+ RL  +K R    P    V+D   V
Sbjct: 21  DLDKARLAAASGALLVIPTDTVYGIGADAANPGAVARLLAVKGRGRQMPPPVLVADADAV 80

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            +    V   +  LA+  WPGPLTLVL            T    T   RVP       + 
Sbjct: 81  DRLCEDVPEAARRLARAHWPGPLTLVLRARDGLGWDLGDTGG--TIALRVPDHPGALALL 138

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A+ SAN +G+   T +   + +     + L  D G +     ST+V        
Sbjct: 139 RATGPMAVTSANTTGRPPATTIDQAV-AYFGGAVDLYADAGPTASSTPSTVVAFAG-GAA 196

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQ 221
           R+LR G L ++ +     +E E    E    +
Sbjct: 197 RVLRHGALGVDDIAALAPLEAEGRAGEGGNAR 228


>gi|298488128|ref|ZP_07006165.1| predicted RNA-binding protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157407|gb|EFH98490.1| predicted RNA-binding protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330989191|gb|EGH87294.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 209

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+   
Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 190

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 191 EP-EVVRVGC 199


>gi|194881657|ref|XP_001974938.1| GG20842 [Drosophila erecta]
 gi|190658125|gb|EDV55338.1| GG20842 [Drosophila erecta]
          Length = 251

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 9/199 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  + D  ALR A + L +G  IA+PT+TVYGLA D+ N TAI+RLYEIK R    P+  
Sbjct: 35  VCPVGDEAALRLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 94

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V +I  +++      LS  L     PGPLT+V++  +      L+ +  K    R+P  
Sbjct: 95  CVHNIEALRRFGQAVHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSK-IGIRIPDF 153

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G      +  L
Sbjct: 154 NFMRDLCAVWHEQPLALTSANRSSAPSSLQVSE--FRSLWPQLGAVFDAGQIGLTEERRL 211

Query: 177 ESTIVNVQCEKKVRILRPG 195
            ST++++       I+R G
Sbjct: 212 ASTVIDLATPGYFEIVRAG 230


>gi|34497149|ref|NP_901364.1| hypothetical protein CV_1694 [Chromobacterium violaceum ATCC 12472]
 gi|34103006|gb|AAQ59369.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 207

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 14/193 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEI-----KKRPAMNPLICH 63
           +  +R+A + L  G  IA PT++ Y L     +  A+ R+ EI     K+R  +  L+CH
Sbjct: 14  ARLIREAVKILREGGVIAYPTDSCYALGCALGDKEAMERILEIRGVDLKQR--LMTLVCH 71

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S +  +A VD     L K   PG  T +L          L      T   RVP   
Sbjct: 72  --DLSELANYAKVDNRQYRLLKSTTPGSYTFILQATREVPRRTL-HPKRATIGLRVPDHK 128

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               L+E  G P+   +    G     +  + +   +   +  ++DGG       +T+V+
Sbjct: 129 VALALLEELGEPILSCTLMLPGDDVPMSDPYEIRERLEHLVDAVLDGGWCGT-EPTTVVD 187

Query: 183 VQCEKKVRILRPG 195
           +     V ++R G
Sbjct: 188 MTDG--VELVREG 198


>gi|326431169|gb|EGD76739.1| yrdC domain-containing protein [Salpingoeca sp. ATCC 50818]
          Length = 388

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 10/201 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
             + +  A E L AG  I +PT+T+YGLA  +++   +RR+Y IK R  + P+   V D+
Sbjct: 97  PDDVVADAVETLRAGGVIGVPTDTIYGLACLAQSTQGVRRIYSIKGRSELKPIAICVHDV 156

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
           + +  +A +  +   L +   PGP+T+VL       ++P    +      RVP   F +K
Sbjct: 157 AAIGAYAELS-VPERLLRALLPGPVTVVLPRKPA--LNPELNPHTSLIGVRVPDFPFVRK 213

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----STIVN 182
           L++  G PLA+ SANRSG+ S  +      S +  E+  + D G  +        ST+V+
Sbjct: 214 LVQALGEPLALTSANRSGEQSCISSSE--FSHLWGELNAVYDAGTIETSGASRLGSTVVD 271

Query: 183 VQCEKKVRILRPGGLEIETLK 203
           +   K  +++R G  E  TL 
Sbjct: 272 LSRGKAYQVIRGGSAEEATLA 292


>gi|269119268|ref|YP_003307445.1| Sua5/YciO/YrdC/YwlC family protein [Sebaldella termitidis ATCC
           33386]
 gi|268613146|gb|ACZ07514.1| Sua5/YciO/YrdC/YwlC family protein [Sebaldella termitidis ATCC
           33386]
          Length = 209

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
               ++++    L        PT+TVYG+     NP  I R+YE K+R    P+I  +SD
Sbjct: 6   ISEESVQEIVSCLKNNGIAIFPTDTVYGIGAVYNNPEGIDRIYEAKQRDRSKPIIALISD 65

Query: 67  ISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           IS + K  S +   L     + K +WPG LT+V D          + A   T   R+P  
Sbjct: 66  ISHLHKLISFEEEDLGNISEIMKKYWPGELTIVFDNSK------YNVAEDNTIGVRIPGD 119

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               ++IE+ G  +   SAN SG+ S    +  +S  I ++   I+DGG    G+ ST++
Sbjct: 120 EILLRIIESCGGIVFTTSANISGEKSPVKTQD-ISYDILEKTDFILDGGTILNGVPSTVI 178

Query: 182 NVQCEKKVRILRPGGLEIETLKRA 205
                 K+ +LR G ++   + + 
Sbjct: 179 K-YSAGKISVLREGNIKTGEILKL 201


>gi|330983264|gb|EGH81367.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 189

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 25  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 84

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 85  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 142

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  
Sbjct: 143 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGG 189


>gi|257482786|ref|ZP_05636827.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 222

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 87  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+   
Sbjct: 145 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 203

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 204 EP-EVVRVGC 212


>gi|50759736|ref|XP_417757.1| PREDICTED: similar to MGC97806 protein [Gallus gallus]
          Length = 255

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 12/201 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A   L  G  +A+PT+TVYG+A  +++  A++ +Y +K R    PL   + D+  
Sbjct: 47  EAVAAAVGALQEGGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPLAICLGDVEH 106

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           + ++  V+ +   L +   PGP+TLVL    + +++            R+P   F ++L 
Sbjct: 107 IYRYCHVN-VPDELLQDLLPGPVTLVLKR--SEELNKDLNPFTSLVGVRIPNHPFIRELA 163

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVN 182
                PLA+ SAN S Q S   V       +  ++ L++DGG        +  L ST+V+
Sbjct: 164 RACPGPLALTSANVSSQASTLTVSE--FQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVD 221

Query: 183 VQCEKKVRILRPGGLEIETLK 203
           +    K  I+RPG     T++
Sbjct: 222 LSVSGKFTIIRPGCALTSTVE 242


>gi|134095363|ref|YP_001100438.1| hypothetical protein HEAR2179 [Herminiimonas arsenicoxydans]
 gi|133739266|emb|CAL62315.1| Conserved hypothetical protein, putative translation factor
           [Herminiimonas arsenicoxydans]
          Length = 207

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 7/200 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     + +A E +  G  +A+PT++ Y L     +  A+ RL  I+     
Sbjct: 3   QFFQIHPENPQARLISQAVEVIKGGGIVALPTDSCYALVCQLDDKDAVARLRRIRNVDDK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           + L     D+S + ++A +D     L K   PG  T +L+         LS  + KT   
Sbjct: 63  HHLTLLCRDLSEIAQYAKIDNQQYRLLKAATPGAYTFILEATKEVP-RRLSHPSRKTIGL 121

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       ++E    PL   +    G+         +   + K + L+IDGG     +
Sbjct: 122 RVPENRIVHAVLEELAQPLLGTTLILPGEDEPLTDPDDVRDRLSKVVDLVIDGGACSF-I 180

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            +T++++   + V   +  G
Sbjct: 181 PTTVIDLTGPEPVLQRQGRG 200


>gi|119469322|ref|ZP_01612261.1| putative RNA binding protein with YrdC/RibB domain [Alteromonadales
           bacterium TW-7]
 gi|119447186|gb|EAW28455.1| putative RNA binding protein with YrdC/RibB domain [Alteromonadales
           bacterium TW-7]
          Length = 206

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A + +  G  +  PT++ Y +  +  N  A  R+  I+     +       D+S
Sbjct: 14  ARLITQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIDKNDNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
            +  +A VD     L K   PGP T +           L     KT   RV        L
Sbjct: 74  ELSTYARVDNQLFRLIKNNTPGPYTFIFKGTKEVP-KRLLNDKKKTIGIRVIEHPIACAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    GQ    +    +   + K + LII GG       +T++++  + 
Sbjct: 133 LAELGEPLMSCSLILPGQEFTESDPDEILDRLDKHVDLIIHGGYLPE-QATTVIDLSEDD 191

Query: 188 KVRILRPGGLEIETLK 203
            V+ILR G  ++   +
Sbjct: 192 -VKILRVGCGDVSPFE 206


>gi|251789771|ref|YP_003004492.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya zeae Ech1591]
 gi|247538392|gb|ACT07013.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya zeae Ech1591]
          Length = 206

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 69/188 (36%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E L  G  I  PT++ Y L     +  A+ R+  I+     +       D+S
Sbjct: 14  PRLINQTVEILRKGGVIVYPTDSGYALGCMLEDKAAMERICRIRSLDQNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP      +L
Sbjct: 74  ELSSYAYVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGMRVPSNPIALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     +    +   + K + L+I GG       +T++++    
Sbjct: 133 LAVLNEPLMSTTLMLPGNDFAESDPEEIQERLGKLVDLVIHGGFLGQ-QPTTVIDLTESV 191

Query: 188 KVRILRPG 195
            V + R G
Sbjct: 192 PV-VAREG 198


>gi|9759323|dbj|BAB09832.1| unnamed protein product [Arabidopsis thaliana]
          Length = 239

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 4/193 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 28  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 87

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A+   L   L     PGP+TLVL    ++ +       + T   RVP C F +++    
Sbjct: 88  VATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGS 147

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVR 190
           G  LA+ SAN SG  S   VK     ++ +    + DGG+   G   STIV++    K +
Sbjct: 148 GSVLALTSANLSGDRSSVCVKD--FENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYK 205

Query: 191 ILRPGGLEIETLK 203
           I+RPG  +  T+ 
Sbjct: 206 IIRPGSAKQATVA 218


>gi|283788082|ref|YP_003367947.1| hypothetical protein ROD_45391 [Citrobacter rodentium ICC168]
 gi|282951536|emb|CBG91235.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 190

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            ++++  A E L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +  
Sbjct: 6   PTDSIAAAVEVLNNENVIAYPTEAVFGVGCDPDSETAVNRLLALKQRPVDKGLILIAASF 65

Query: 68  SMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +     L+    +     WPGP+T V    +TT      T    +   RV     
Sbjct: 66  DQLKPYIDDSMLTEARREAVFARWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L E YG PL   SAN SG       + +  +    + P+++ G        S I + 
Sbjct: 124 VVALCEAYGKPLVSTSANLSGLPPCRTTEEV-RAQFGDDFPVVV-GETGGRLNPSEIRDA 181

Query: 184 QCEKKVR 190
              +  R
Sbjct: 182 LTGELFR 188


>gi|239993815|ref|ZP_04714339.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii ATCC
           27126]
          Length = 206

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +ACE +  G  +  PT++ Y +     +  A+ +L  I++    +       D+S
Sbjct: 14  KRLISQACELIREGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRQIDKDHNFTLMCRDMS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +    K   PG  T VL          L     KT   RVP       L
Sbjct: 74  ELSIYAKVDNTAFRQIKNNTPGRYTFVLKATREVP-KRLQNPKRKTIGIRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G     +   ++  ++ K++ LII GG       +T+V++  + 
Sbjct: 133 LEELGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGLIIHGGYIGE-QPTTVVDLSEDT 191

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 192 PVIVRHGTG 200


>gi|73540803|ref|YP_295323.1| Sua5/YciO/YrdC/YwlC [Ralstonia eutropha JMP134]
 gi|72118216|gb|AAZ60479.1| Sua5/YciO/YrdC/YwlC [Ralstonia eutropha JMP134]
          Length = 207

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + +  G  IA+PT++ Y L     +  A+ RL  ++     + L    SD+S
Sbjct: 14  PRLIKQAVQIIRQGGLIALPTDSSYALGCQLDDKAAVERLRRLRGIDDKHHLTLMCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +   A VD       K   PGP   +L+         LS  + KT   RVP       L
Sbjct: 74  ELGSFARVDNRQYRWIKGATPGPYVFILEATKEVP-RRLSHPSRKTIGVRVPEHAIPLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G     N    + + + K + L+I GG +     +T++++   +
Sbjct: 133 LADAGEPLLTATLQLPGDEEPMNDPAEIRARLEKLLDLVICGGPAPA-QPTTVIDLTSGE 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-ELVRQG 198


>gi|329119555|ref|ZP_08248239.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464342|gb|EGF10643.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 206

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+  + +  G   A PT++ Y L     +  A+ R+  I+K    + L    +D++
Sbjct: 14  ERLIRQVAQIVRGGGVAAYPTDSCYALGCRLGDKEAMERILRIRKIDLKHHLTLMCADLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     + K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELGTYAKVDNAQFRMLKAATPGSYTFILQATKEVPNRTL-HPKRKTIGLRVPDNAVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +          +  + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LRELGEPLLSCTLMLPEDSEPLSDPYEIRDRLEHAVDLVIDGGWCGT-EPTTVVDMTDG- 190

Query: 188 KVRILRPG 195
            V ++R G
Sbjct: 191 -VTLVREG 197


>gi|306823415|ref|ZP_07456790.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium ATCC
           27679]
 gi|309802724|ref|ZP_07696828.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553122|gb|EFM41034.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium ATCC
           27679]
 gi|308220788|gb|EFO77096.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 220

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 8/213 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ +ITD + L +A E +  G  I IPT+TVYG+A D RN  AIR++Y +K+RP   PL 
Sbjct: 3   EVRTITDES-LAQAVEIIRDGGLIVIPTDTVYGVACDPRNVEAIRKIYMVKQRPKYKPLQ 61

Query: 62  CHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117
             ++ I  +       P+ L  LA +F PG   P+    D  S   +         T   
Sbjct: 62  VLLASIDGLDALRLDLPVPLNRLAAMFMPGAFSPIAEARDNCSLATVRRDPATGKTTQGV 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       I     PLA  SANRSG+ S   V   +  ++   + L +DGG +   + 
Sbjct: 122 RIPNSAATLRILRAVGPLAATSANRSGEESAQTVDEAV-EALGDAVDLYLDGGATPGHVS 180

Query: 178 STIV--NVQCEKKVRILRPGGLEIETLKRAISV 208
           ST+V  +      + ILR G +    +++A+++
Sbjct: 181 STVVAADPHGRDGISILREGVIREAVIRKALTL 213


>gi|212277729|sp|B3PGZ1|RIMN_CELJU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 189

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 5/179 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  +  +  A+  L  +K+RP    +I   +++  ++   
Sbjct: 13  AANMMRQGGVIAYPTEAVWGLGCNPFDEDAVADLLALKQRPVEKGVILIAANLQQIEPFI 72

Query: 75  S-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYG 132
             +D L     K  WPGP+T ++            T    +   RV        L   +G
Sbjct: 73  DHLDDLQRQRLKNTWPGPVTWLVPN--NGLAPHWITGAFPSVALRVTDHPVAAGLCRAFG 130

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
            P+   S N +G+    N+  +       ++  +  G   +    S I ++   + VR 
Sbjct: 131 GPVVSTSCNPAGKPPARNIHEV-RRYFGGQLDAVSSGLAGRRTNPSEIRDLLTGQVVRP 188


>gi|209694705|ref|YP_002262633.1| hypothetical protein VSAL_I1156 [Aliivibrio salmonicida LFI1238]
 gi|208008656|emb|CAQ78841.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 206

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 73/196 (37%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  I  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLISQAVAIIRDGGVIIYPTDSGYALGCQIENKQALERICQIRRLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +           L     KT   RVP       L
Sbjct: 74  ELSIYARVDNTMFRLLKNNTPGAYTFIFKGTKEVP-RRLMNPKRKTIGMRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G          +   +   + LI++GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTTLILPGNEMAEADPEAIRDQLEHAVDLIMNGGYLGE-QPTTVIDFSDDD 191

Query: 188 KVRILRPGGLEIETLK 203
            ++I R G  +    +
Sbjct: 192 -IKIARVGAGDPSPFE 206


>gi|90412190|ref|ZP_01220196.1| putative translation factor [Photobacterium profundum 3TCK]
 gi|90326914|gb|EAS43299.1| putative translation factor [Photobacterium profundum 3TCK]
          Length = 206

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLMTQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L +   PG  T +           L     KT   R+P       L
Sbjct: 74  EIANYARVDNAAFRLLRSNTPGAYTFIFKGTKEVP-RRLMNPKRKTIGIRIPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S          +    +   +   + LI++GG       +T+++   ++
Sbjct: 133 LEELGEPLMSTSLILPNSDVAESDPEDIRDKLEHAVDLIMNGGYLGE-QPTTVIDFSNDE 191

Query: 188 KVRILRPGG 196
            + +LR G 
Sbjct: 192 -MEVLRVGA 199


>gi|46198747|ref|YP_004414.1| sua5 protein [Thermus thermophilus HB27]
 gi|55980762|ref|YP_144059.1| hypothetical protein TTHA0793 [Thermus thermophilus HB8]
 gi|46196370|gb|AAS80787.1| sua5 protein [Thermus thermophilus HB27]
 gi|55772175|dbj|BAD70616.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 195

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 17/198 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL KA E L  G  +A PT+TV+G+     +  A +R+YE+K RP   PL   V+D+ 
Sbjct: 6   QEALAKAAETLKGGGLVAFPTDTVWGVLALMEDEAACKRIYEVKGRPEDKPLQVLVADLE 65

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
              +   + PL    L LA+ FWPG LT+V+   +   I P  + +  +   R+P     
Sbjct: 66  SALELVDLGPLEGKFLRLAEAFWPGGLTVVVPGKA---IPPWISKD-GSVGLRMPDHALL 121

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L+   G   A  S N+SG+  +       + +    +  +  G     GL S++V+++
Sbjct: 122 RELLRRVGGHAAATSLNKSGEPPVRTEAEARTFA----VDFVFPGE--AGGLASSVVDLR 175

Query: 185 CEKKVRILRPGGLEIETL 202
                 +LR G +  E L
Sbjct: 176 TG---EVLREGAIPKEAL 190


>gi|288905238|ref|YP_003430460.1| translation factor (SUA5) [Streptococcus gallolyticus UCN34]
 gi|288731964|emb|CBI13529.1| Putative translation factor (SUA5) [Streptococcus gallolyticus
           UCN34]
          Length = 199

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 8/191 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  + +PTETVYGL     N  A+  +Y++K+RP    +  +V+D   +   +   
Sbjct: 7   ILQNGGAVILPTETVYGLFAQVMNEKAVEHVYQLKRRPKDKAMNLNVADFETILAFSKQQ 66

Query: 78  PLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135
           P  L  L   F PGPLT++L   +   +     + L T  FR+P    T KLI+  G PL
Sbjct: 67  PSYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPNHPQTLKLIKKAG-PL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SGQ S    K I             D  ++  G++STI+++   K  RILR G
Sbjct: 124 IGPSANISGQESGKVFKEIQKQFGGTVTGFADDAALT--GVDSTILDLSG-KTARILRQG 180

Query: 196 GLEIETLKRAI 206
            +    L   +
Sbjct: 181 AITQNDLLAVV 191


>gi|114050899|ref|NP_001040163.1| ischemia/reperfusion inducible protein [Bombyx mori]
 gi|87248253|gb|ABD36179.1| ischemia/reperfusion inducible protein [Bombyx mori]
          Length = 274

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 108/222 (48%), Gaps = 10/222 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++S  D  A  +A E L  G  IA+PT+T+YGLA  +  P AI++LY IK R A+ P+  
Sbjct: 46  VISCVDFTASLRAAECLAKGQVIAVPTDTIYGLACSANCPLAIKKLYSIKGREAVKPVAI 105

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V+ ++ ++K      +S  L     PGP+T+VL      D +P    +      R+P  
Sbjct: 106 CVTSVADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLD-NPFLNPSTTKIGIRIPKH 164

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177
            F   + + +  P+A+ SAN S + S  ++K      +   +  I DGG+   GLE    
Sbjct: 165 DFMNTVTKIFDMPVALTSANFSNEPSTLSIKE--FEHLYPHLAAIFDGGLLSQGLEQNRT 222

Query: 178 -STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
            ST++++      +I+R G +  + + + +        +E+ 
Sbjct: 223 GSTVIDLSKNGLYKIIRKG-ISYDNVIKVVERYGLKKNNESE 263


>gi|329945874|ref|ZP_08293561.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328528322|gb|EGF55300.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 246

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 16/222 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +AL+ ACE L AG  + +PT+TVYG+  ++ +  A+ RL   K R    P    V+  + 
Sbjct: 20  DALQPACEHLRAGGLVILPTDTVYGIGCNAADAGAVERLLASKGRGRQMPPPVLVAGPAD 79

Query: 70  VKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +    +  P +   L + FWPGPLTL+LD  +        T+   T   R+P       L
Sbjct: 80  LTGVVAQVPEAARILMEAFWPGPLTLILDADAALTWDLGETSG--TIAIRMPDHELALDL 137

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILS---------SSICKEIPLIIDGGISKIGLES 178
           +   G PLA+ SAN +G    T+     +          ++  E  L++DGG +   + S
Sbjct: 138 LRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRGVDAVGTEDILLLDGGATSGPVPS 196

Query: 179 TIVNVQCEK--KVRILRPGGLEIETLKRAISVELEYCVDETS 218
           TIV +        RILR G L    L+R   V +     + +
Sbjct: 197 TIVTLAGAHACSPRILRKGVLSPADLERVAGVNVAEQTAQAT 238


>gi|254481766|ref|ZP_05095009.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037895|gb|EEB78559.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 207

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +R+A + + AG  +  PT++ Y +     +  A+ R+  I+K    +       D+S
Sbjct: 14  ARLVRQAVDIIRAGGVVVYPTDSAYAIGCHIGDKNALDRIRRIRKLADRHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +  ++ VD     + K   PGP T +L   S      L  A  KT   RVP    T+ L
Sbjct: 74  EIATYSRVDNADYRMLKACTPGPYTFILKATSEVP-RRLMHAKRKTVGLRVPDNNITQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   +    G        + +  ++  ++ L+IDGG   +   +T+V++  E 
Sbjct: 133 LTDLGEPMMSVTLIMPGDEYPLIDPYDIRETLQHDVDLVIDGGYCGM-EATTVVDLVDET 191

Query: 188 KVRILRPGGLEIETLK 203
            + +LR G  +I   +
Sbjct: 192 PL-VLRAGKGDIAPFE 206


>gi|54309647|ref|YP_130667.1| putative translation factor [Photobacterium profundum SS9]
 gi|46914085|emb|CAG20865.1| putative translation factor [Photobacterium profundum SS9]
          Length = 206

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLMTQAVAIIRNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNDKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L +   PG  T +           L +   KT   R+P       L
Sbjct: 74  EIANYARVDNAAFRLLRSNTPGAYTFIFKGTKEVP-RRLMSPKRKTIGIRIPNNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S          +    +   +   + LI++GG       +T+++   ++
Sbjct: 133 LEELGEPLMSTSLILPNSDVAESDPEDIRDKLEHAVDLIMNGGYLGE-QPTTVIDFSNDE 191

Query: 188 KVRILRPGG 196
            + +LR G 
Sbjct: 192 -MEVLRVGA 199


>gi|332533672|ref|ZP_08409531.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036836|gb|EGI73297.1| Sua5 YciO YrdC YwlC family protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 187

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 7/189 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++D +    A   L  G  I  PTE VYGL  D  N  A+  L  IK+RP    LI    
Sbjct: 1   MSDLSNTPTAITCLTQGEVILYPTEAVYGLGCDPDNQQAVEALLAIKQRPVEKGLILIAD 60

Query: 66  DISMVKKHASVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +   + K+     + +   A +F  WP  +T V+   ++ +     T    T   RV   
Sbjct: 61  NYGQLLKYVDDAKIPMDKRADIFSSWPAAITWVMP--ASKNTPKWLTGQFDTIAVRVTNH 118

Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              K+L + +G PL   SAN +GQ ++ +++    +   +++   +D  +      STI 
Sbjct: 119 PTVKRLCQEFGKPLVSTSANLTGQETVISIEQA-KAQFAEQVGFYVDEPLGGNTQPSTIK 177

Query: 182 NVQCEKKVR 190
           +    K  R
Sbjct: 178 DAMTGKIFR 186


>gi|70728990|ref|YP_258724.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5]
 gi|68343289|gb|AAY90895.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5]
          Length = 217

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  +  PT++ Y +A    +  AI R+  +++    +      SD+S
Sbjct: 22  PRLIKQAVEIIRGGGVVIYPTDSSYAVACQMGDKGAIERVRRLRQLDDKHNFALICSDLS 81

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +   A +D  +  L K   PGP T +L+         L     +T   RVP       L
Sbjct: 82  QLGLFAKIDTGTFRLLKAHVPGPYTFILNATREVP-RLLLHPKRRTIGLRVPSNPIALAL 140

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G     +  + +   +  ++ LIIDGG       ST++N+  + 
Sbjct: 141 LAELGEPLMSVSLIMPGDTEALSDPYEMRQLLEHQVDLIIDGGFGST-ESSTVINL-ADG 198

Query: 188 KVRILRPGG 196
           +  ++R G 
Sbjct: 199 EPEVIRVGC 207


>gi|332140784|ref|YP_004426522.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550806|gb|AEA97524.1| Sua5/YciO/YrdC/YwlC family protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 206

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +ACE +  G  +  PT++ Y +     +  A+ +L  I++    +       D+S
Sbjct: 14  KRLISQACELIRDGAVVVYPTDSGYAIGCQMEDKKALEQLCRIRQIDKDHNFTLMCRDMS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +    K   PG  T VL          L     KT   RVP       L
Sbjct: 74  ELSIYAKVDNTAFRQIKNNTPGHYTFVLKATREVP-KRLQNPKRKTIGIRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           +E  G PL   S    G     +   ++  ++ K++ LII GG   IG   +T++++  +
Sbjct: 133 LEELGEPLMSTSLILPGNTMAESDPDVIRDNLEKQVGLIIHGGY--IGEHPTTVIDLSDD 190

Query: 187 KKVRILRPGG 196
             V +    G
Sbjct: 191 TPVIMRHGTG 200


>gi|297626234|ref|YP_003687997.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921999|emb|CBL56561.1| Sua5/YciO/YrdC/YwlC [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 292

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 5/193 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL-SLHL 83
           I +PT+TVYG+  D+ +  A++ L   K R    P    +++ +M+    S  PL +  +
Sbjct: 60  IVLPTDTVYGIGADAFSADAVQGLLNAKHRGRDMPPPVLIAEPAMLPALVSSIPLGAERM 119

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
            K  WPG LTL+L+  + T +H        T   RVP     + +  +  PLA+ SAN S
Sbjct: 120 IKECWPGALTLILN--AATALHMDLGETAGTIAVRVPDNDDARALLLHTGPLAVSSANIS 177

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           GQ S T+V   + + +   + + +DGG +   + STIV+       RILR G +  + L+
Sbjct: 178 GQPSATDVGAAI-AMLGDSVAVYLDGGRTPGPVASTIVDFTVSPAGRILRQGVIGFDQLE 236

Query: 204 RAISVELEYCVDE 216
             +S  LE  V E
Sbjct: 237 G-LSPGLEDLVTE 248


>gi|225010857|ref|ZP_03701325.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005065|gb|EEG43019.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-3C]
          Length = 206

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 13/209 (6%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q++ I  +N    AL K    L  G  I  PT+TVYG+  D  N  A+ +L ++K     
Sbjct: 3   QLIKIYPNNPQEAALEKVVRALRDGALIIYPTDTVYGIGCDITNNKALEKLAKLKGVKLE 62

Query: 58  NPL-ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                   +D+S +  +   +D  +  + K   PGP T VL   +     P +    KT 
Sbjct: 63  KATWSFICADLSNISDYVKQIDTATFKILKRSLPGPYTFVLPGNNNL---PKAFKKRKTI 119

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISK 173
             RVP     KK++E  G+P+   S     ++   T    ++       +  +IDGG   
Sbjct: 120 GIRVPDHSIPKKIVEMLGNPIVSTSIYDPDEVLEYTTDPELIFEKWSPHVAFVIDGGYGD 179

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETL 202
             + STIV++  +    ++R G    + L
Sbjct: 180 -NVPSTIVDLSGDSP-ELIRRGKGNFDLL 206


>gi|331012312|gb|EGH92368.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 209

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+   
Sbjct: 132 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 190

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 191 EP-EVVRVGC 199


>gi|331092924|ref|ZP_04587538.2| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021931|gb|EGI01988.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 209

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +   + LIIDGGI  I   ST+VN+  E
Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQVLEHHVDLIIDGGIGGIS-ASTVVNL-SE 189

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 190 GEPQIVRVGC 199


>gi|225681026|gb|EEH19310.1| Sua5/YciO/YrdC/YwlC family protein [Paracoccidioides brasiliensis
           Pb03]
          Length = 412

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 59/238 (24%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ AL ++ E L  + +P+A PTETVYGL  D+    A++ +Y+ K+RPA NPLI HVS 
Sbjct: 57  EAKALLESAEALRMSDIPVAFPTETVYGLGADATRSAAVQGIYKAKQRPADNPLIVHVSS 116

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
              +++                      +L   S++  H  S +       R        
Sbjct: 117 REQLQR----------------------ILRSHSSSPDHGSSDSRKTGNQEREETNLIPP 154

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           + E  G                              I +I+DGG   +G+EST+V+    
Sbjct: 155 IYEPLG-----------------------------RIDIILDGGPCGVGVESTVVDGLL- 184

Query: 187 KKVRILRPGGLEIETLKRAISVEL------EYCVDETSTPQSPGMLKSHYAPRSQVRL 238
               ILRPGG+ IE ++     E       +  +     P++PGM   HY+P+++V L
Sbjct: 185 HPPAILRPGGIGIEEIRACPGWEDVRVGYKDGALQGKEAPRAPGMKYKHYSPKAKVVL 242



 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 259 NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHG--LGIAINNRLE 316
           N+       ++S     +  A  LF+ ++  D+   S I    I +    L  AI NRL 
Sbjct: 345 NLATPAELFDVSIGRDTESIARGLFSALRGLDEENVSVIYVEGISDTEGDLAAAIMNRLR 404

Query: 317 RAA 319
           +AA
Sbjct: 405 KAA 407


>gi|254496473|ref|ZP_05109350.1| translation factor [Legionella drancourtii LLAP12]
 gi|254354329|gb|EET12987.1| translation factor [Legionella drancourtii LLAP12]
          Length = 214

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  LRKA   ++ G  I  PT++ Y L     N  A+ R+  +++    + +     D+S
Sbjct: 22  ARLLRKAATIIEDGGVIVYPTDSGYALGCSLGNKAALERIRRLRQLDKNHNMTLVCRDLS 81

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            +  +A V      L K+  PG  T +L+  +T ++  L      KT   RVP    T  
Sbjct: 82  QLGTYARVPNPIFRLLKVLTPGSYTFILN--ATHEVPRLMLHPKKKTLGLRVPDNLITLA 139

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+ET   PL   +    G  +  +    +   +  ++ L+IDGG       +T+V++  +
Sbjct: 140 LLETLEAPLMSSTLILPGAKAPLSEPEAIRDILGNQVDLVIDGGNCGQ-EPTTVVDLTGD 198

Query: 187 KKVRILRPGGLEIETLK 203
             V ILR G  + +  +
Sbjct: 199 YPV-ILREGKGDPDPFR 214


>gi|213968655|ref|ZP_03396797.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato T1]
 gi|301384615|ref|ZP_07233033.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato Max13]
 gi|302062060|ref|ZP_07253601.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato K40]
 gi|302130738|ref|ZP_07256728.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213926588|gb|EEB60141.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. tomato T1]
 gi|331017429|gb|EGH97485.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 222

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 87  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLILHPKRRTIGLRVPSHPIAQA 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +   + LIIDGGI  I   ST++N+  E
Sbjct: 145 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHHVDLIIDGGIGGIS-ASTVINL-SE 202

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 203 GEPQIVRVGC 212


>gi|302188867|ref|ZP_07265540.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae 642]
          Length = 222

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 87  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+  E
Sbjct: 145 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQVLEHQVDLIIDGGIGGIS-ASTVINL-AE 202

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 203 GEPQIVRVGC 212


>gi|333029267|ref|ZP_08457328.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM
           18011]
 gi|332739864|gb|EGJ70346.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM
           18011]
          Length = 199

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ L  G  I  PT+TV+G+  D+ N  A++R+Y IK+R     L+  V     
Sbjct: 15  EDIKKACQVLRDGGVILYPTDTVWGIGCDATNAEAVKRVYAIKQRTDSKALLVLVDSPVK 74

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           V  +    P ++  L +     PLT++ D     ++ P   A+  +   RV    F+++L
Sbjct: 75  VDFYVEDIPSVAWDLIE-LTEKPLTIIYD--GARNLAPNLLADDGSVGIRVSGEKFSQQL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ + +N    +S  +   +  I++     +     S+I+ +  
Sbjct: 132 CQRFRKAIVSTSANISGQPTPSNFSE-ISDEVKSLVDYIVEYRQDDMSHPKPSSIIKLGR 190

Query: 186 EKKVRILRP 194
             +V+++R 
Sbjct: 191 GGEVKVIRE 199


>gi|262040758|ref|ZP_06013989.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041902|gb|EEW42942.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 190

 Score =  164 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            S A+  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +  
Sbjct: 6   PSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASF 65

Query: 68  SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +                 WPGP+T V      T      T    +   RV     
Sbjct: 66  EQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPET--PRWLTGRFDSLAVRVTNHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L E YG PL   SAN +GQ        +  +      P ++DG        S I + 
Sbjct: 124 VIELCEAYGKPLVSTSANLTGQPPCRTTAEVY-AQFGDSFP-VVDGATGGRQNPSEIRDA 181

Query: 184 QCEKKVR 190
              +  R
Sbjct: 182 LTGELFR 188


>gi|325836782|ref|ZP_08166249.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sp. HGF1]
 gi|325491160|gb|EGC93449.1| Sua5/YciO/YrdC/YwlC family protein [Turicibacter sp. HGF1]
          Length = 197

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 6/201 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I     L +    L     I  PT+TVYG+  +  +P A+ +++E+K RP    LI   +
Sbjct: 2   IFKKEQLSEIIGQLHEDDVIVFPTDTVYGIGANIHSPIALNKIFEVKNRPTDKSLIILCA 61

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           ++  +++    +D     L   F PG LTL+L+     ++    T    T   R+P    
Sbjct: 62  NVMQMEEIVGPLDQQVKVLVDNFLPGGLTLILNT--KLELADEITRGKSTIGLRIPNHPV 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
              +     PLA  SAN SG+ S T ++   S+ +   +  +ID G +   + STI++  
Sbjct: 120 ALELLEKIGPLATTSANISGEPSPTMIE--TSNPVISRVKFVIDDGETMEKVPSTILDCT 177

Query: 185 CEKKVRILRPGGLEIETLKRA 205
            + ++ ILR G +  E +K+ 
Sbjct: 178 -QSEIVILRQGAISEEEIKKF 197


>gi|294784249|ref|ZP_06749544.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 3_1_27]
 gi|294488115|gb|EFG35466.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium sp. 3_1_27]
          Length = 217

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V  
Sbjct: 25  IKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSD 84

Query: 79  ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
               L   LAK FWPG LT++L       I  +  +   T   R+P      K+IE  G 
Sbjct: 85  KNKNLLEKLAKAFWPGALTVILKRKEH--IPSIMVSGGDTIGVRIPNLDLAIKIIELAGG 142

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR
Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200

Query: 194 PGG 196
            G 
Sbjct: 201 KGA 203


>gi|260062809|ref|YP_003195889.1| putative Sua5/yciO/yrdC family protein [Robiginitalea biformata
           HTCC2501]
 gi|88784377|gb|EAR15547.1| putative Sua5/yciO/yrdC family protein [Robiginitalea biformata
           HTCC2501]
          Length = 207

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 9/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSD 66
           +  A+R+  E    G  +  PT+TVYGL  D  N  A+ RL  IK              D
Sbjct: 13  NPKAVRQVVEAFRDGGLVIYPTDTVYGLGCDITNSRALERLARIKGVKLHKANWSFICED 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +S +  +   +D  +  + K   PGP T +L   +     P      KT   RVP     
Sbjct: 73  LSNLSDYVRQIDTQTFKILKRALPGPYTFILPGNNNL---PRDFKKKKTVGIRVPDNRIA 129

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             L+   G P+   S      +   T    ++       + +++DGG     + ST++++
Sbjct: 130 HALVAGLGRPIVSTSIRDEDDVLEYTTDPELIYEKWENLVDVVVDGGYGG-NVASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIETL 202
              +   I+R G  ++  L
Sbjct: 189 SGPEP-EIVREGKGDLSIL 206


>gi|269128126|ref|YP_003301496.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM
           43183]
 gi|268313084|gb|ACY99458.1| Sua5/YciO/YrdC/YwlC family protein [Thermomonospora curvata DSM
           43183]
          Length = 258

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 8/222 (3%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +  +  + +A   +  G  I +PT+TVYG+  D+  P+A++ L + K      P    V
Sbjct: 13  PMERTRGIAEAVSAVRRGELIVLPTDTVYGIGCDAFTPSAVQALLDAKGHGRDRPPAVLV 72

Query: 65  SDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             +                L   FWPG LTLV    +  ++         T   R+P   
Sbjct: 73  GSVRAATALVEDLGTYGQDLIDEFWPGALTLVC--RANRNLSWDLGDAKGTVAVRMPLHD 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
               +     PLA+ +A R G     +      S     + + +DGG S     ST++++
Sbjct: 131 LALELLKETGPLAVSAAARKGGPPARSAAQA-ESVFGDAVSVCLDGGPSGERQPSTLLDL 189

Query: 184 QCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQS 222
                 R+LR G + ++ ++    V   E +   +ET+ PQ+
Sbjct: 190 TGPIP-RLLRAGAVSVDRIRAITGVVMTEEDESAEETAEPQA 230


>gi|225870519|ref|YP_002746466.1| hypothetical protein SEQ_1163 [Streptococcus equi subsp. equi 4047]
 gi|225699923|emb|CAW93855.1| conserved hypothetical protein [Streptococcus equi subsp. equi
           4047]
          Length = 197

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 6/192 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    E + AG  + +PTETVYGL   + N  A+  +Y +KKRP    +  +V+D   + 
Sbjct: 2   ITHLIETIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPRDKAMNLNVADFESIL 61

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             +   P  L  L + F PGPLT++L   +         + LKT  FR+P       I  
Sbjct: 62  AFSKQQPAYLNKLYEAFLPGPLTIIL--KANAQTPYWINSGLKTVGFRLPSHPLTAKIIR 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SG  S      I+ +    ++    D      G +STI+++    KV 
Sbjct: 120 ATGPLIGPSANLSGSKSGKCFNDIVKA-FDGKVDGYADDAY-LTGKDSTILDLSS-PKVS 176

Query: 191 ILRPGGLEIETL 202
           ILR G +  E L
Sbjct: 177 ILRQGAITKEQL 188


>gi|152972191|ref|YP_001337337.1| putative ribosome maturation factor [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|330002239|ref|ZP_08304250.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3]
 gi|212288208|sp|A6TET6|RIMN_KLEP7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|150957040|gb|ABR79070.1| putative RNA-binding protein with unique protein fold [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328537378|gb|EGF63627.1| Sua5/YciO/YrdC/YwlC family protein [Klebsiella sp. MS 92-3]
          Length = 190

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            S A+  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +  
Sbjct: 6   PSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASF 65

Query: 68  SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +                 WPGP+T V      T      T    +   RV     
Sbjct: 66  EQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPET--PRWLTGRFDSLAVRVTNHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L E YG PL   SAN +GQ        +  +      P ++DG        S I + 
Sbjct: 124 VIELCEAYGKPLVSTSANLTGQPPCRTTAEV-HAQFGDSFP-VVDGATGGRQNPSEIRDA 181

Query: 184 QCEKKVR 190
              +  R
Sbjct: 182 LTGELFR 188


>gi|118462898|ref|YP_880757.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium 104]
 gi|254774340|ref|ZP_05215856.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118164185|gb|ABK65082.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium avium 104]
          Length = 219

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +  A   +  G  + +PT+TVYG+  D+ N  A+  L   K R    P+   V    
Sbjct: 14  SRGIAAAAAAVKGGRLVVMPTDTVYGIGADAFNSAAVSALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++      P  +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 74  TIEGLVYTMPDGARDLIRAFWPGALSLVVTQAPSLQW--DLGDARGTVMLRMPLHPVAIE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG  +  +        +   + + +  G ++ G  STIV++    
Sbjct: 132 LLREVGPMAVSSANISGHPAAVDADEA-RGQLGDLVDVYLAAGRAERGAASTIVDLTGAT 190

Query: 188 KVRILRPGGLEIETLKRAISVELEYCV 214
             RILRPG +  + +   + ++ E   
Sbjct: 191 P-RILRPGPVSAQRIAEVLGIDPESLA 216


>gi|261821581|ref|YP_003259687.1| hypothetical protein Pecwa_2310 [Pectobacterium wasabiae WPP163]
 gi|261605594|gb|ACX88080.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium wasabiae WPP163]
          Length = 206

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S
Sbjct: 14  PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAHVDNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     +    +   + K + LII GG S     +T++++  E 
Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQEELGKLVDLIIHGG-SLGQQPTTVIDLT-ES 190

Query: 188 KVRILRPG 195
             R+ R G
Sbjct: 191 VPRVAREG 198


>gi|308177038|ref|YP_003916444.1| Sua5 family translation factor [Arthrobacter arilaitensis Re117]
 gi|307744501|emb|CBT75473.1| putative Sua5 family translation factor [Arthrobacter arilaitensis
           Re117]
          Length = 227

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 9/200 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHL 83
           I +PT+TVYG+  D+ +   +  L   K R    P    ++  + +   A  +   +  L
Sbjct: 30  IVLPTDTVYGIGADAFSAQGVAMLLAAKGRNRTMPPPVLIAQSATMDGLARDIPDEARKL 89

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A+ FWPG LTL+L    +       T    T   RVP   T   +     PLA+ SANR+
Sbjct: 90  AEAFWPGGLTLILHAQPSLTWDLGET--RGTVALRVPNDETALELLGQTGPLAVSSANRT 147

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGI-SKIG---LESTIVNVQCEKKVRILRPGGLEI 199
           G  +  N++  L   +   + + +DGG   + G   L STI++    + + ++R G + I
Sbjct: 148 GNPAALNIEQAL-EQLGDSVDVYLDGGPRGEEGDDVLPSTIIDCTG-QHLSVVRSGAISI 205

Query: 200 ETLKRAISVELEYCVDETST 219
           E L+  +   L+   D   T
Sbjct: 206 EELRVVVPGILDLGQDAPET 225


>gi|256846908|ref|ZP_05552362.1| SUA5 family protein [Fusobacterium sp. 3_1_36A2]
 gi|256717706|gb|EEU31265.1| SUA5 family protein [Fusobacterium sp. 3_1_36A2]
          Length = 217

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V  
Sbjct: 25  IKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFTSPLIALLSSVDKVEEVAYVSD 84

Query: 79  ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
               L   LAK FWPG LT++L       I  +  +   T   R+P      K+IE  G 
Sbjct: 85  KNKNLLEKLAKAFWPGALTVILKRKEH--IPSIIVSGGDTIGVRIPNLDLAIKIIELAGG 142

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR
Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200

Query: 194 PGG 196
            G 
Sbjct: 201 KGA 203


>gi|41408558|ref|NP_961394.1| hypothetical protein MAP2460c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396916|gb|AAS04777.1| hypothetical protein MAP_2460c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 219

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 5/207 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  +  A   +  G  + +PT+TVYG+  D+ N  A+  L   K R    P+   V    
Sbjct: 14  SRGIAAAAAAVKGGRLVVMPTDTVYGIGADAFNSAAVSALLSAKGRGRDMPVGVLVGSWH 73

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            ++      P  +  L + FWPG L+LV+    +            T   R+P       
Sbjct: 74  TIEGLVYTMPDGARDLIRAFWPGALSLVVPQAPSLQW--DLGDARGTVMLRMPLHPVAIE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN SG  +  +        +   + + +  G ++ G  STIV++    
Sbjct: 132 LLREVGPMAVSSANISGHPAAVDADEA-RGQLGDLVDVYLAAGRAERGAASTIVDLTGAT 190

Query: 188 KVRILRPGGLEIETLKRAISVELEYCV 214
             RILRPG +  + +   + ++ E   
Sbjct: 191 P-RILRPGPVSAQRIAAVLGIDPESLA 216


>gi|313675808|ref|YP_004053804.1| translation factor sua5 [Marivirga tractuosa DSM 4126]
 gi|312942506|gb|ADR21696.1| translation factor SUA5 [Marivirga tractuosa DSM 4126]
          Length = 207

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 8/196 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN-PLICHVSD 66
           D   +++  + L  G  I  PT+T+YGL  D  N  AI +L  +K        L     D
Sbjct: 14  DPRKIQQIVDLLKDGAVIIYPTDTIYGLGCDLTNRKAIDKLCWVKDIKPGKINLSFICED 73

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           +S +  +   +   +  L K   PGP T +L   + +++  +  AN KT   R+P     
Sbjct: 74  MSHISDYVKNLSTPTFKLMKKNLPGPFTFILP--ANSNVPKIVNANKKTVGIRIPNNNIP 131

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             L++  G+PL   S   +  I         +  S    + ++IDGG       ST+++ 
Sbjct: 132 IALVKALGNPLITTSIKDNDDIVEYPTDPEEIYESFKNLVDVVIDGGYGN-NNPSTVIDC 190

Query: 184 QCEKKVRILRPGGLEI 199
             E    I+R G  EI
Sbjct: 191 TKE-PAEIVREGLGEI 205


>gi|28869017|ref|NP_791636.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852257|gb|AAO55331.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|330876948|gb|EGH11097.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966749|gb|EGH67009.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 209

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLILHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +   + LIIDGGI  I   ST++N+  E
Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHHVDLIIDGGIGGIS-ASTVINL-SE 189

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 190 GEPQIVRVGC 199


>gi|253998631|ref|YP_003050694.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. SIP3-4]
 gi|253985310|gb|ACT50167.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. SIP3-4]
          Length = 209

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E L  G  +A PT++ Y L     N  A  R+  I+     +       ++S
Sbjct: 14  PRLIAQAVEILRNGGVVAYPTDSSYALGCVVGNKDAQDRIRAIRGVDDDHLFTLVCRNLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +L          L      T   RVP    T+ L
Sbjct: 74  ELAVYAQVDNSQFRLLKANTPGQYTFILKATREVP-RRLQHPKRSTLGLRVPDHAVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S    G+  + N    +   +  ++ L+ID G       +T++++  + 
Sbjct: 133 LEALDEPLLSMSLQLPGEEDVLNEAWEIRDRLEHQLDLVIDAGAC-SATPTTVIDLTGDS 191

Query: 188 KVRILRPGGLEI 199
            + ++R G   +
Sbjct: 192 PI-LVRAGAGSL 202


>gi|284163341|ref|YP_003401620.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM
           5511]
 gi|284012996|gb|ADB58947.1| Sua5/YciO/YrdC/YwlC family protein [Haloterrigena turkmenica DSM
           5511]
          Length = 202

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 11/204 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + L +A E + AG  +  PTETVYGL  D  +  A+ R++E K R    P+   V   
Sbjct: 2   DDDDLERAAEAIRAGELVVYPTETVYGLGADGLDADAVERVFEAKGRDRSKPVSVAVPTF 61

Query: 68  SMV--KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
                + +          A  F PGP+TL+ +   T  +  + TA       RVP C   
Sbjct: 62  ETALEEGYVRASERERAFADEFLPGPVTLLCER--TEALPDVLTAGRDRVGIRVPDCEPA 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVN 182
            + +E    P+   SAN SG+ S   V+ I    + + + L  D      +  + ST+V+
Sbjct: 120 LRFLEAAERPVTATSANVSGEPSARRVEDIGQQVLDEAVVLEADDLYESIEETVPSTVVD 179

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           ++ E    I R G L  + ++  +
Sbjct: 180 LEAE---TIHRRGAL-ADEIEAWL 199


>gi|253688396|ref|YP_003017586.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754974|gb|ACT13050.1| Sua5/YciO/YrdC/YwlC family protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 206

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S
Sbjct: 14  PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP      +L
Sbjct: 74  ELSTYAHVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPIALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     +    +   + K++ LII GG S     +T++++  E 
Sbjct: 133 LAALNEPLMSTTLMLPGNDFAESDPEEIQEILGKQVDLIIHGG-SLGQQPTTVIDLT-ES 190

Query: 188 KVRILRPG 195
             R+ R G
Sbjct: 191 APRVAREG 198


>gi|261342752|ref|ZP_05970610.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288314931|gb|EFC53869.1| Sua5/YciO/YrdC/YwlC family protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 190

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L     IA PTE V+G+  D  +  A+ RL  +K+RP    LI   ++   +
Sbjct: 9   SIAHAVDVLKNEEVIAYPTEAVFGVGCDPDSEKAVSRLLALKQRPVEKGLILIAANYEQL 68

Query: 71  KKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +       P         WPGP+T V     TT      T    +   RV       +
Sbjct: 69  KPYIDDAMLTPAQRETIFSAWPGPVTFVFPAQPTT--PRWLTGRFDSLAVRVTDHPLVVE 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +G PL   SAN +G       + +L +    + P+ I G        S I +    
Sbjct: 127 LCLAFGKPLVSTSANLTGLPPCRTTEEVL-AQFGNDFPVAI-GETGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           ++ R
Sbjct: 185 ERFR 188


>gi|304382269|ref|ZP_07364776.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella marshii DSM 16973]
 gi|304336626|gb|EFM02855.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella marshii DSM 16973]
          Length = 189

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    +R+A E L AG  I  PT+TV+G+  D+ N  A+ R+Y IK+R     LIC V 
Sbjct: 1   MTQQEDIRQAVEVLKAGGVILYPTDTVWGIGCDATNKEAVARIYRIKQREDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + ++++   V P++  L  +    P T++LD     ++ P   A+  +   R+    F
Sbjct: 61  SDARLQRYVRDVPPVAWDLLDVA-EKPTTVILD--GAVNLAPNLIADDGSIALRITKEAF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           +++L   +   +   SAN SGQ +  N   I    +   +  +      +      S+I+
Sbjct: 118 SRELCYRFQKAIVSTSANISGQPAAQNYCDIAPELLES-VDYVCHSRRQEKRPHTPSSII 176

Query: 182 NVQCEKKVRILRP 194
            +  + +V+I+RP
Sbjct: 177 KLAADGEVKIVRP 189


>gi|330960478|gb|EGH60738.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 209

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +   + LIIDGGI  I   ST++N+  E
Sbjct: 132 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHHVDLIIDGGIGGIS-ASTVINL-SE 189

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 190 GEPQIVRVGC 199


>gi|332662189|ref|YP_004444977.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331003|gb|AEE48104.1| Sua5/YciO/YrdC/YwlC family protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 205

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 8/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           +   + +  E L+ G  I  PT+TVYGL  D  N  A+ ++  +++    +  L     D
Sbjct: 11  EGRKINQVIEKLNEGGIIIYPTDTVYGLGCDINNQAAVEKICRLRRLDPKDAMLAIICKD 70

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           IS V++    +D  +  L K   PG  T +L    +  +  +     KT   R+P     
Sbjct: 71  ISQVQEFTQQIDNPTFKLLKRNLPGAFTFILPAAGS--VPKMFRNRKKTIGIRIPDHNIP 128

Query: 125 KKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +L+E  G P+   S     +I        ++     K + ++ID G       ST+V+ 
Sbjct: 129 LQLVEGLGRPILTTSLKSDDEILEYFTDPELIYEDFQKLVDIVIDSGNGG-NTPSTVVDC 187

Query: 184 QCEKKVRILRPGGLEIE 200
             EK + +LR G   +E
Sbjct: 188 TQEKPI-VLRLGAGMLE 203


>gi|302818656|ref|XP_002991001.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii]
 gi|300141332|gb|EFJ08045.1| hypothetical protein SELMODRAFT_132635 [Selaginella moellendorffii]
          Length = 201

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 5/196 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++++ T  N +R A   L  G  I++PT+T+YGLA D+ +  A+ R+Y+IK R A +PL 
Sbjct: 8   KVLAATQEN-VRHAIAALRRGDVISVPTDTLYGLAADACSRVAVERIYDIKGRNAGSPLA 66

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             V+D+  +K++A +D L   L     PGP+TLVL+    +++       L +   R+P 
Sbjct: 67  VCVADVPDLKRYARIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPD 126

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             F + +   +   LA+ SAN S + S   V+      +  +   + D G    G   ST
Sbjct: 127 SDFIRSVARAFDGALALTSANTSSRPSSICVEE--FEHLWPQCAAVFDAGELSAGRAGST 184

Query: 180 IVNVQCEKKVRILRPG 195
           IV++  E   ++LR G
Sbjct: 185 IVDLTAEASFKVLRAG 200


>gi|209693706|ref|YP_002261634.1| hypothetical protein VSAL_I0082 [Aliivibrio salmonicida LFI1238]
 gi|208007657|emb|CAQ77767.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 185

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L+ G  IA PTE V+G+  D  N  A+ +L ++K+RP    LI   + I  + 
Sbjct: 4   LDQVVKALNNGGVIAYPTEGVFGVGCDPDNEFALHQLLKVKQRPREKGLILIAASIDQLL 63

Query: 72  KH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +   A ++   ++  K  WPGP+T ++ +   T   PL T    +   RV      K +
Sbjct: 64  PYIDLAQLNNDQINRIKFTWPGPVTWIVPVNKNTL--PLVTGQFDSIAVRVSAHPQVKAI 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G P+   SAN SG      V  +    +     ++  G I      + I + +  +
Sbjct: 122 CSAFGKPITSTSANLSGYEPCRTVLEV-EEQLGDLGVVVFQGEIGNRTQPTEIRDAKTGE 180

Query: 188 KVR 190
            +R
Sbjct: 181 TLR 183


>gi|86607002|ref|YP_475765.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab]
 gi|86555544|gb|ABD00502.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. JA-3-3Ab]
          Length = 235

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 25/228 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++++    L  G  +  PT+TVY +  D  +  A+ R+  +K+     PL      +S
Sbjct: 14  ARSIQRIAAALREGAVMLYPTDTVYAIGCDVTHKQAVERVRRLKRLSNDKPLTFLCPSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC-GFTKK 126
            + ++A V   +  L +   PGP T +L   +T  +  L      KT   RVP     + 
Sbjct: 74  QIAQYAQVSDPAYRLMRRLIPGPFTFLLP--ATKLVPKLVMDPKRKTTGIRVPDSAICQA 131

Query: 127 LIETYGHPLAIPSANRSGQIS-----------------ITNVKHILSSSICKEIPLIIDG 169
           L+   G+P+   SA   G                    I   + +    + K++ L++D 
Sbjct: 132 LLAELGNPIVSTSAKLGGDPVGSLEVGFDSAGDWEEGGIFTAEEM--RQLEKQVDLVLDD 189

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET 217
                   ST++++   + +  L   GL  E +   I++ L+    E 
Sbjct: 190 EAPYRAQVSTVIDLTGPEPL--LVRAGLGYEQVADLINLNLKPVEAEG 235


>gi|88798246|ref|ZP_01113832.1| hypothetical protein MED297_13347 [Reinekea sp. MED297]
 gi|88779022|gb|EAR10211.1| hypothetical protein MED297_13347 [Reinekea sp. MED297]
          Length = 206

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 79/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E +  G  IA PT++ Y L     N   +  +  I++    + L     D+S
Sbjct: 14  PRLIKQAAEIVLQGGVIAYPTDSAYALGCLMGNKRGMDAIRRIRQIDEKHNLTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
            +  +A VD ++  L K   PGP T +L          L     +T   RV        L
Sbjct: 74  DLANYAKVDNVAFRLIKNNTPGPYTFILQATREVP-RKLLHPKRRTIGLRVLANNIASAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   +          N  + +   +  E+ L+IDGG      EST+V++  + 
Sbjct: 133 LDAVGEPMLSSTLILPNDEDPLNDPYYIREILEHELDLVIDGGFCGF-EESTVVSLLDDV 191

Query: 188 KVRILRPGGLEIETLK 203
              ILR G  +    +
Sbjct: 192 P-EILRVGAGDPAPFE 206


>gi|224543569|ref|ZP_03684108.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523496|gb|EEF92601.1| hypothetical protein CATMIT_02778 [Catenibacterium mitsuokai DSM
           15897]
          Length = 206

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 7/201 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +   +      +  G  +A PTETVYG+A    +   + R+ EIKKR     +   +S
Sbjct: 4   VIEPEQMDLLVSAVRDGKIVAFPTETVYGVACLFDDLKGLDRIMEIKKRNPNKAVTLMLS 63

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
               VKK+  VD  +  +   F PG +T+VL  L + D      +   T   R+P   F 
Sbjct: 64  KKDDVKKYGLVDEGTQRVIDKFMPGRMTIVLKRLDSVDSR--HVSGKDTIGIRIPDSSFV 121

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             LI+  G PL++ SAN SGQ + TN K +L + +  +I +++ G  +     ST+V++ 
Sbjct: 122 LSLIDQTG-PLSVTSANLSGQGNTTNEKEVL-AQLDGQIDMVVRG-QTASATASTVVDLS 178

Query: 185 CEKKVRILRPGGLEIETLKRA 205
               VRILR G +  E ++  
Sbjct: 179 QGD-VRILREGLITKEEIEEV 198


>gi|322831110|ref|YP_004211137.1| SUA5/yciO/yrdC domain protein [Rahnella sp. Y9602]
 gi|321166311|gb|ADW72010.1| SUA5/yciO/yrdC domain protein [Rahnella sp. Y9602]
          Length = 189

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+     +     E L     IA PTE V+GL  D  +  A+  L  +KKRP    LI  
Sbjct: 1   MNKETEKSFSAVLEALHGQHVIAYPTEAVFGLGCDPDSEQAVEALLALKKRPKDKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +   +  +     L+         FWPGP+T V+    +T      T    +   RV 
Sbjct: 61  ADNYQQLLPYIDDSSLTEQQLAHVVSFWPGPVTWVMPAKPST--PDWLTGRFTSLAVRVT 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K+L + +G PL   SAN +GQ      + +      K+ P ++DG +      S 
Sbjct: 119 DHPLVKELCQKFGKPLVSTSANLNGQPPCRLSEEV-RLQFGKDFP-VLDGDVGGRDNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +      +R
Sbjct: 177 IRDALTGNLIR 187


>gi|330995801|ref|ZP_08319698.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329574531|gb|EGG56096.1| Sua5/YciO/YrdC/YwlC family protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 189

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +     +R+A E +  G  I  PT+T++G+  D+ N  A+RR+Y+IKKR     LIC V 
Sbjct: 1   MNREEDIRQAVEVMRRGGVILYPTDTIWGIGCDATNEEAVRRVYDIKKRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
               ++++   V  ++  L + +   PLT++ D     ++ P   A   +   RV    F
Sbjct: 61  SDHRLQRYVSDVPNVAWDLIE-YATRPLTIIFD--KAKNLAPNLLAEDGSVGIRVTREEF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIV 181
           +++L   +   +   SAN SG+ S       +S  I   +  I+     +      S+I+
Sbjct: 118 SRELCYRFQKAVVSTSANVSGEPSPACFDD-ISDEIKNAVDYIVQSRRKEKTKAAPSSII 176

Query: 182 NVQCEKKVRILR 193
            ++ + +V I+R
Sbjct: 177 KLRPDGEVTIIR 188


>gi|260582127|ref|ZP_05849921.1| SUA5 protein [Haemophilus influenzae NT127]
 gi|260094759|gb|EEW78653.1| SUA5 protein [Haemophilus influenzae NT127]
          Length = 207

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 7/193 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E L  G  I  PT++ Y L     +  A+ R+  I+K    +      SD+S
Sbjct: 14  ARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLTEGHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A+V+  +  L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 74  ELSTYATVNNTAYRLIKNNTPGRYTFILTATKELP-RRLMTSKRKTIGLRVPDNKIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQC 185
           +   G P+   S     +   T +    +   +  ++ LII GG   +G E +T+V++  
Sbjct: 133 LSALGEPILSCSLMLPNEEHTTQSDPEEIRDRLEHQVDLIIHGGY--LGQEPTTVVDLTE 190

Query: 186 EKKVRILRPGGLE 198
           E  V ILR G   
Sbjct: 191 ESPV-ILREGSGS 202


>gi|66046814|ref|YP_236655.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae B728a]
 gi|63257521|gb|AAY38617.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae B728a]
          Length = 222

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 87  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+  E
Sbjct: 145 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQVLEHQVDLIIDGGIGGIS-ASTVINL-AE 202

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 203 GEPQIVRVGC 212


>gi|238798392|ref|ZP_04641874.1| hypothetical protein ymoll0001_19710 [Yersinia mollaretii ATCC
           43969]
 gi|238717777|gb|EEQ09611.1| hypothetical protein ymoll0001_19710 [Yersinia mollaretii ATCC
           43969]
          Length = 184

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 4/183 (2%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  +  PT++ Y L     + TA+ R+  I++    +       D+S +  +A VD
Sbjct: 1   MLRKGGVVVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVD 60

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLA 136
             +  L K   PG  T +L          L     KT   RVP       L++  G PL 
Sbjct: 61  NSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALALLDVLGEPLM 119

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
             +    G     +    +   + K++ LII GG S     +T++++  +    ++R G 
Sbjct: 120 STTLMLPGNDFAESDPEEIKDHLGKQVDLIIHGG-SLGQQPTTVIDLT-DSSPEVIREGA 177

Query: 197 LEI 199
            + 
Sbjct: 178 GDA 180


>gi|86147122|ref|ZP_01065438.1| Sua5/YciO/YrdC family protein [Vibrio sp. MED222]
 gi|85835006|gb|EAQ53148.1| Sua5/YciO/YrdC family protein [Vibrio sp. MED222]
          Length = 185

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +  +   + L  G  IA PTE V+G+  D  NP AI++L ++K+RP    LI   +    
Sbjct: 2   DNFQHTLQALQQGEVIAYPTEGVFGVGCDPDNPQAIKKLLDLKQRPMEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +  +     L+       K  WPGP+T ++    ++ +    +   ++   RV      +
Sbjct: 62  LLPYIDESQLTEAQLATVKATWPGPVTWIMPT--SSKVTDWVSGQFESIAVRVTDHPLVQ 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++   +G PL   SAN +G+      + +    + + +  I++G        S I + + 
Sbjct: 120 RMCNEFGKPLTSTSANLTGESPCMTTEEV-QQQLGQHLVAILEGQTGGREKPSEIRDAKT 178

Query: 186 EKKVR 190
            K +R
Sbjct: 179 SKILR 183


>gi|330972285|gb|EGH72351.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 209

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+  E
Sbjct: 132 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQVLEHQVDLIIDGGIGGIS-ASTVINL-AE 189

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 190 GEPQIVRVGC 199


>gi|58584895|ref|YP_198468.1| putative translation factor, SUA5 [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419211|gb|AAW71226.1| Putative translation factor, SUA5 [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 208

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 5/207 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    +   L +  PTETVY LA ++ +  AI ++Y++KKR    PL   VSD+  + 
Sbjct: 2   VSEIINAIQNNLLVCFPTETVYALACNALDDGAIEKIYQVKKRSQDKPLSIFVSDVCSLV 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           K A ++   + L   F PGP+T +L L +   +         +   R+P       ++  
Sbjct: 62  KIARLEEKYIDLINHFSPGPITYILPLKNNNMLPNRFFKG--SIGIRIPDHPIAISILNR 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   S N SG+ S+      +  SI + +  +I+G     G+ESTI ++    +++
Sbjct: 120 LKIPIVATSINVSGEKSVCKASD-IPQSIKQHLSAVIEGDELVSGIESTITDLTGN-RIK 177

Query: 191 ILRPGGLEIETLKRAISVELEYCVDET 217
            LR G + ++ +   +  E+    +E 
Sbjct: 178 FLREGIISLQVVNNMLLTEIYRKKNEK 204


>gi|225868515|ref|YP_002744463.1| hypothetical protein SZO_09360 [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701791|emb|CAW99204.1| conserved hypothetical protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 197

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 6/192 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    + + AG  + +PTETVYGL   + N  A+  +Y +KKRP    +  +V+D   + 
Sbjct: 2   ITHLIKTIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPRDKAMNLNVADFESIL 61

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             +   P  L  L + F PGPLT++L   +         + LKT  FR+P       I  
Sbjct: 62  AFSKQQPAYLNKLYEAFLPGPLTIIL--KANAQTPYWINSGLKTVGFRLPSHPLTAEIIR 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SG  S      I+ +    ++    D      G +STI+++    KV 
Sbjct: 120 ATGPLIGPSANLSGSKSGKCFNDIVKA-FDGKVDGYADDAY-LTGKDSTILDLSS-PKVS 176

Query: 191 ILRPGGLEIETL 202
           ILR G +  E L
Sbjct: 177 ILRQGAITKEQL 188


>gi|289677279|ref|ZP_06498169.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. syringae FF5]
          Length = 222

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 87  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQA 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+  E
Sbjct: 145 LLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINL-AE 202

Query: 187 KKVRILRPGG 196
            + +I+R G 
Sbjct: 203 GEPQIVRVGC 212


>gi|317052438|ref|YP_004113554.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5]
 gi|316947522|gb|ADU66998.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5]
          Length = 202

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 10/200 (5%)

Query: 1   MQIMSI----TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M++ ++     DS  +  A E +  G  +A PT++ YG+  D  N  AI R+  IK+   
Sbjct: 1   MKLFTVQPNNIDSRQIAAAVEIMRNGGLVAYPTDSAYGIGCDILNKDAIARVRRIKQMHD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             PL    S +S   ++A +   +    K   PGP T +LD    T    +     K   
Sbjct: 61  AKPLTFICSSLSHASQYAIISDYAYRTMKHLIPGPYTFLLDATKLTPKA-VQNPKRKRCG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P       L+E  G P+   +A   G+   T     +   +   +  ++DGG S+  
Sbjct: 120 IRIPANDICMALVEELGRPIISTTAKVDGE--PTGDPWRIHQELEGMLDALVDGGYSEPT 177

Query: 176 LESTIVNVQCEKKVRILRPG 195
              T V +    +V ++R G
Sbjct: 178 Q--TTVLLFENNQVELVRQG 195


>gi|228477561|ref|ZP_04062194.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus salivarius SK126]
 gi|228250705|gb|EEK09903.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus salivarius SK126]
          Length = 201

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 8/192 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  + +PTETVYGL   + + +A+  +YE+K RP    +  +V+    +  ++  
Sbjct: 10  EILADGGAVVLPTETVYGLFAKAMDESAVNHVYELKNRPRDKAMNLNVASYEDILSYSKE 69

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
            P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++LI+  G P
Sbjct: 70  QPKYLKQLYDAFLPGPLTIIL--KANDKVPRWINSGLATVGFRLPNHPVTRELIQAEG-P 126

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN+SG+ S       + +    ++    D   + +G++STI+++      +ILR 
Sbjct: 127 LIGPSANKSGEASGRYFDQ-IRAQFDFQVTGYQDDA-ALLGVDSTILDLSVS-PAKILRQ 183

Query: 195 GGLEIETLKRAI 206
           G +  E L  A+
Sbjct: 184 GKITKEDLLAAL 195


>gi|195401705|ref|XP_002059453.1| GJ18829 [Drosophila virilis]
 gi|194142459|gb|EDW58865.1| GJ18829 [Drosophila virilis]
          Length = 259

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 9/207 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++   +AL+ A + L  G  I +PT+TVYGLA D+ N  AI+RLYEIK R    P+  
Sbjct: 41  VCAVASLDALKLAEQCLHLGQVIGLPTDTVYGLACDANNEEAIQRLYEIKGRDEHKPVAI 100

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V++I+ ++++     LS  L     PGPLT++++         L+ +  K    R+P  
Sbjct: 101 CVNNIAALRRYGQASHLSDELLTRLLPGPLTIIVERSPQLSNRFLNPSTTK-IGIRIPDY 159

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L  T+   PLA+ SANRS   S   V      S+  ++  + D G      +  L
Sbjct: 160 KFMRDLCATWHEQPLALTSANRSSAPSSLQVSE--FQSLWPQLGAVFDAGRIGQTEERRL 217

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            ST++++       I+R G    +TL 
Sbjct: 218 ASTVIDLAKPGSYSIVRAGVALKQTLA 244


>gi|303237066|ref|ZP_07323636.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella disiens FB035-09AN]
 gi|302482453|gb|EFL45478.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella disiens FB035-09AN]
          Length = 189

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++KA E +  G  I  PT+TV+G+  D+ N  A+ ++YEIK R     L+C V 
Sbjct: 1   MTQQEDIKKAVEVMRKGGVILYPTDTVWGIGCDATNAEAVAKVYEIKHRDDSKALVCLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
               ++++  +V  ++  L +     P T++LD     ++     A   +   R+    F
Sbjct: 61  SQDRLQRYVRNVPDVAWQLMEAV-VKPTTIILDN--AVNLASNLVAEDGSIGMRITNEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           +K+L   +   +   SAN SG+ +  N    +S  I   +  +      +      STI+
Sbjct: 118 SKELCFRFQKAIVSTSANISGEPAAQNYPD-ISEEILNAVDYVCMSRRQEHKPHQPSTII 176

Query: 182 NVQCEKKVRILR 193
            V    ++ I+R
Sbjct: 177 KVGESGEITIIR 188


>gi|261403807|ref|YP_003248031.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius
           M7]
 gi|261370800|gb|ACX73549.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus vulcanius
           M7]
          Length = 211

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 2   QIMSITD--SNALRKACEFLDA----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
           +I+ I D      +K   FL      G  I   T+T+YG++ ++ N  A++++Y+IKKR 
Sbjct: 4   KIIKIYDLDKEKRKKVLNFLKKEILDGKIIICGTDTLYGISANALNENAVKKIYQIKKRD 63

Query: 56  AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
              PL   + DI+ +KK+A V+ L+  + K F PGP+T++L     ++I  L +   +  
Sbjct: 64  YNKPLSICLKDINEIKKYAYVNELAEKIIKHFLPGPITIIL--KKKSNIPNLVS--KEYI 119

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P     +  E    PL   SAN SG    T V+ I    I K +  +ID G  K  
Sbjct: 120 GIRIPDEEIIR--ELAIVPLTTTSANISGGKDPTCVEEIDGE-IIKNVDYVIDIGKCKYS 176

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
             STI+ ++ +  + ++R G +    +  +I
Sbjct: 177 KPSTIIKIK-DSSITLIREGAVPFSEILASI 206


>gi|320323237|gb|EFW79325.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329732|gb|EFW85721.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 222

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 87  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTISLRVPSHPIAQA 144

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+   
Sbjct: 145 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 203

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 204 EP-EVVRVGC 212


>gi|260062207|ref|YP_003195287.1| Sua5/YciO/YrdC/YwlC family protein [Robiginitalea biformata
           HTCC2501]
 gi|88783769|gb|EAR14940.1| Sua5/YciO/YrdC/YwlC family protein [Robiginitalea biformata
           HTCC2501]
          Length = 190

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 5/192 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M     N L    + L++G  I  PT+TV+G+  D+ NP A+ R+Y +K+RP    LIC 
Sbjct: 1   MKTAMKNILDNCLQVLESGGLILYPTDTVWGIGCDATNPEAVARVYTLKQRPDSKALICL 60

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PC 121
           V     +++    V  ++  +       P+T+V D      + P   A   +   R+   
Sbjct: 61  VGSGRQLEQLIPEVPDVAWDIMD-LSEKPVTIVYDNP--QGVAPNLVAADNSLAVRIASD 117

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            F ++L+  +  PL   SAN +GQ +  +   I    +     ++     +++   S+I+
Sbjct: 118 NFCRELLRRFRKPLVSTSANLAGQPTPDSFSGIAPDILNGVDYVVPLQQETELRTPSSII 177

Query: 182 NVQCEKKVRILR 193
            ++ + +V+++R
Sbjct: 178 RLKADGQVQVIR 189


>gi|242237896|ref|YP_002986077.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech703]
 gi|242129953|gb|ACS84255.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech703]
          Length = 189

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L +  + L     IA PTE V+GL  D  +  A+ RL ++K+RP    LI   +D +
Sbjct: 6   SKQLSELLKKLREEQVIAYPTEAVFGLGCDPDSEVAVNRLLQLKQRPWEKGLILIAADFA 65

Query: 69  MVKKHASVDPLSL---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            V+ +  V  LS          WPGP+T V+   + T      T    +   RV      
Sbjct: 66  QVEPYIDVSALSYIQQQRMFSTWPGPVTWVIPAKAQT--PKWLTGQFSSLAVRVSDHPLV 123

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           K+L   +G PL   SAN SG+      + +LS    K  P ++ G +      S I +  
Sbjct: 124 KQLCLAFGKPLVSTSANLSGEAPCRTAEDVLS-QFGKNFP-VLSGKVGGRLNPSEIRDAL 181

Query: 185 CEKKVR 190
              ++R
Sbjct: 182 TGAQLR 187


>gi|159027852|emb|CAO87065.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 213

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 10/204 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++++ C  L  G  +  PT+TVY +  D    +A+ R+ +IK+     PL    S +S
Sbjct: 14  QRSIQEICHALKNGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKQLSNDKPLTFLCSSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            + ++A V   +  + +   PGP T +L   +T  +  +      KT   RVP     + 
Sbjct: 74  NISEYAVVSDYAYKIMRRVIPGPYTFLLP--ATKLVPKVVMNPKRKTTGIRVPDHVICRT 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI----LSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++ET  +P+   SA+   Q      K +    L  ++   + LII+ G +     STIV+
Sbjct: 132 ILETLENPIISSSAHLPDQEGDFPTKGLETARLFDALDHVVDLIIEDGSAPGSEVSTIVD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
              ++   + +  G     L++ +
Sbjct: 192 FTSDQPDIVRQGLGWP--ELQQWL 213


>gi|85711001|ref|ZP_01042062.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein
           [Idiomarina baltica OS145]
 gi|85695405|gb|EAQ33342.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family protein
           [Idiomarina baltica OS145]
          Length = 184

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +  A   L  G  IA PTE V+GL  D RN  AIR++  +K+RP    LI   +D S +
Sbjct: 5   DIESARSALLNG-VIAYPTEAVFGLGCDPRNEEAIRKILTLKERPEDKGLILIAADYSQL 63

Query: 71  KKHASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
             +     +     K F     WPGP+TL+L    T  + PL T    T   RV      
Sbjct: 64  TPYVKDSAIGQD--KRFSVLSHWPGPVTLILPARDT--VSPLLTGGRDTIAVRVTAYEPV 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++L    G  L   SAN SG+      + + S     E+  + D         S I++
Sbjct: 120 RELCRKLGTALVSTSANPSGEEPARTAQEV-SGYFGDEVDWVWDEKTGGAEQPSKIID 176


>gi|62181908|ref|YP_218325.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129541|gb|AAX67244.1| putative translation factor [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322716394|gb|EFZ07965.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 200

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 8/193 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ +   + ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI
Sbjct: 10  QVNNNLPTGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLI 69

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
              +    +K +     L+    K     WPGP+T V    +TT      T    +   R
Sbjct: 70  LIAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVR 127

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           V        L   YG PL   SAN SG      V+ +  +    + P +++G        
Sbjct: 128 VTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNP 185

Query: 178 STIVNVQCEKKVR 190
           S I +    +  R
Sbjct: 186 SEIRDALTGELFR 198


>gi|237728617|ref|ZP_04559098.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter sp. 30_2]
 gi|226909239|gb|EEH95157.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter sp. 30_2]
          Length = 190

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            ++A+  A   L     IA PTE V+G+  D  + TA+ RL  +K+RP    LI   S+ 
Sbjct: 6   PTDAIAAAIAVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIASNF 65

Query: 68  SMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +     L+          WPGP+T V   L+TT      T    +   RV     
Sbjct: 66  EQLKPYIDDSMLTDAQRDAVFARWPGPVTFVFPALATT--PRWLTGRFDSLAVRVTDHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L + YG PL   SAN SG      V+ +  +    + P +++G        S I + 
Sbjct: 124 VVALCQAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGTDFP-VVEGETGGRLNPSEIRDA 181

Query: 184 QCEKKVR 190
              ++ R
Sbjct: 182 LTGEQFR 188


>gi|300709454|ref|YP_003735268.1| Sua5/YciO/YrdC/YwlC family protein [Halalkalicoccus jeotgali B3]
 gi|299123137|gb|ADJ13476.1| Sua5/YciO/YrdC/YwlC family protein [Halalkalicoccus jeotgali B3]
          Length = 192

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 8/196 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L +A   + AG  +  PTETVYGL  D+ +P A+ R+YE K R    PL   V D+   
Sbjct: 2   ELDRAVRAIRAGELVVYPTETVYGLGADALDPAAVERVYEAKGRARSKPLSMAVPDVEAA 61

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            +H S+        + F PGP+T+V+   +  ++    TA       R+P       +  
Sbjct: 62  ARHTSLTDHERAFMREFLPGPVTVVV--AAGPEVPEALTAGRDRVGIRIPDQDLALSLLE 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SGQ S   V   L + + +    ++DGG +  G EST+V+V+     R
Sbjct: 120 EVAPITATSANASGQSSARRVAD-LDAGVRRAAACVLDGGETG-GTESTVVDVERG---R 174

Query: 191 ILRPGGLEIETLKRAI 206
           + R G L  E ++  +
Sbjct: 175 LHRRGAL-AEEIEAWL 189


>gi|194753758|ref|XP_001959177.1| GF12752 [Drosophila ananassae]
 gi|190620475|gb|EDV35999.1| GF12752 [Drosophila ananassae]
          Length = 342

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 94/199 (47%), Gaps = 9/199 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  + D  A+  A + L  G  IA+PT+TVYGLA D+ N  AI+RLYEIK R    P+  
Sbjct: 126 VCPVGDETAIPLARQCLLNGEVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAI 185

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V +I+ +++      LS  L     PGPLT+V++  S      L+    K    R+P  
Sbjct: 186 CVHNIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTSYLSNRFLNPTTSK-IGIRIPDF 244

Query: 122 GFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F   L   +   PLA+ SANRS   S   V      S+   +  + D G      +  L
Sbjct: 245 QFMSDLCAVWQDQPLALTSANRSSAPSSLQVSE--FQSLWPHLGAVFDAGRIGLTEERRL 302

Query: 177 ESTIVNVQCEKKVRILRPG 195
            ST++++       I+R G
Sbjct: 303 ASTVIDLATPGYYEIVRAG 321


>gi|171741085|ref|ZP_02916892.1| hypothetical protein BIFDEN_00151 [Bifidobacterium dentium ATCC
           27678]
 gi|283455537|ref|YP_003360101.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium Bd1]
 gi|171276699|gb|EDT44360.1| hypothetical protein BIFDEN_00151 [Bifidobacterium dentium ATCC
           27678]
 gi|283102171|gb|ADB09277.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium dentium Bd1]
          Length = 220

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 8/213 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ +ITD + L +A E +  G  I IPT+TVYG+A D RN  AIR++Y +K+RP   PL 
Sbjct: 3   EVRTITDES-LAQAVEIIRDGGLIVIPTDTVYGVACDPRNVEAIRKIYMVKQRPKYKPLQ 61

Query: 62  CHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACF 117
             ++ I  +       P+ L  LA +F PG   P+    D  S   I         T   
Sbjct: 62  VLLASIDGLDALRLDLPVPLNRLAAMFMPGAFSPIAEARDNCSLATIRRDPATGKTTQGV 121

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           R+P       I     PLA  SANRSG+ S   V   +  ++   + L +DGG +   + 
Sbjct: 122 RIPNSAATLRILRAVGPLAATSANRSGEESAQTVDEAV-EALGDAVGLYLDGGATPGHVS 180

Query: 178 STIV--NVQCEKKVRILRPGGLEIETLKRAISV 208
           ST+V  +      + ILR G +    +++A+++
Sbjct: 181 STVVAADPHGRDGISILREGVIREAVIRKALTL 213


>gi|290475292|ref|YP_003468180.1| protein yciO [Xenorhabdus bovienii SS-2004]
 gi|289174613|emb|CBJ81407.1| Protein yciO [Xenorhabdus bovienii SS-2004]
          Length = 206

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + ++ + L  G  +  PT++ Y +     N  A+ R+  I++    +       D+S
Sbjct: 14  SRLIGQSVDMLKKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLDGRHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  EIATYAHVDNQAFRLIKNNTPGNYTFILQATKDVP-RRLMNEKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S    G     +    +   + K++ LII GG       +T++++  + 
Sbjct: 133 LEGMREPLMSCSLILPGNDFAESDPEEIKDVLGKQVDLIIHGGYLGQ-QPTTVIDLTGDS 191

Query: 188 KVRILRPG 195
              +LR G
Sbjct: 192 PA-VLREG 198


>gi|86141363|ref|ZP_01059909.1| putative Sua5/yciO/yrdC family protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85831922|gb|EAQ50377.1| putative Sua5/yciO/yrdC family protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 205

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 13/206 (6%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           + + + D N     +++  E L     I  PT+TVYGL  D  +  A+ R+ +++     
Sbjct: 3   EFIKLYDENPSEREIKRIVEVLKNDGVIIYPTDTVYGLGCDITSNRALERVAQLRGVKLA 62

Query: 58  NP-LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                    D+S +  +   +D  +  L K   PGP T +L   +     P      KT 
Sbjct: 63  KANFSFICEDLSNLSDYVRQIDTPTFKLLKRALPGPYTFILPGNNNL---PTVFKKKKTV 119

Query: 116 CFRVPC-GFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173
             RVP     + ++   G+P+   S       I  T    ++     K + ++IDGG   
Sbjct: 120 GIRVPDNNIARAIVSHLGNPIISTSIYDEDDVIEYTTDPELILEKWDKLVDVVIDGGYGG 179

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEI 199
             + ST++++   + V +LR G  E+
Sbjct: 180 -NIPSTVIDLTSGEAV-VLREGKGEL 203


>gi|308187010|ref|YP_003931141.1| hypothetical protein Pvag_1502 [Pantoea vagans C9-1]
 gi|308057520|gb|ADO09692.1| Uncharacterized protein yciO [Pantoea vagans C9-1]
          Length = 206

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A ++L+ G  I  PT++ Y L        A+ R+  I++    +       D+S
Sbjct: 14  PRLINQAVDYLNKGSVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ V   +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSVYSQVGNSAFRLLKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +  SI K + LIIDGG +     +T+V++  + 
Sbjct: 133 LEALNQPMMSTSLILPGNDFTESDPEEIQHSIGKLVDLIIDGG-TLGQQPTTVVDLTTDS 191

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 192 P-EIVREG 198


>gi|326796235|ref|YP_004314055.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas mediterranea MMB-1]
 gi|326546999|gb|ADZ92219.1| Sua5/YciO/YrdC/YwlC family protein [Marinomonas mediterranea MMB-1]
          Length = 206

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 4/186 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A + +  G  IA PT++ Y L     +  A+ R+  I++    +     V D+S + 
Sbjct: 17  IKQAAQIVREGGVIAYPTDSGYSLGCHIGDKKALERIRTIRRLDDKHNFTLVVRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A  D +   L K   PGP T + +  S      L     KT   R+P       L++ 
Sbjct: 77  TYARFDNVMYRLLKHNTPGPYTFIFNATSEVP-RRLMHPKRKTIGIRIPQSNIVSALLDE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   S    G+       + +  ++  ++ L+IDGG    G+E T V     + + 
Sbjct: 136 LGEPLMSASLILPGESDPMMDPYDIRGTLEHQLDLVIDGGYC--GMEPTTVVHMDSEDIT 193

Query: 191 ILRPGG 196
           + R G 
Sbjct: 194 VSRVGA 199


>gi|254492266|ref|ZP_05105440.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxidans
           DMS010]
 gi|224462591|gb|EEF78866.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxydans
           DMS010]
          Length = 207

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 4/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++AC+ +  G  +  PT++ Y L     +   + R+  I++  A +       D+S + 
Sbjct: 17  IKQACDIIRRGGLVVYPTDSGYALGCQIGDKNTMDRIRRIRQLDADHNFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A  +     L K   PG  T VL          L     KT   R+P       L+E 
Sbjct: 77  TYAKFNNAVFRLLKAHTPGSYTFVLPATKEVP-KRLQHPKRKTIGLRIPEHTIALALLEE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   +    G          +  +I K + LIIDGG     + +T++    +    
Sbjct: 136 LDEPLMSSTLILPGDDLPMTDAEDIVDAIGKHVDLIIDGGACGA-IPTTVIEFIDDVP-E 193

Query: 191 ILRPG 195
           + R G
Sbjct: 194 VTRYG 198


>gi|330881429|gb|EGH15578.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 209

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP     + 
Sbjct: 74  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTISLRVPSHPIAQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+   
Sbjct: 132 LLEQLGEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGG 190

Query: 187 KKVRILRPGG 196
           +   ++R G 
Sbjct: 191 EP-EVVRVGC 199


>gi|323342352|ref|ZP_08082584.1| hypothetical protein HMPREF0357_10765 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463464|gb|EFY08658.1| hypothetical protein HMPREF0357_10765 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 215

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 7/202 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + N      + +  G  +AI T+TVYGLA  S + +  ++L + K+RP   P    V  +
Sbjct: 20  NKNQSDDIAQMIQEGGLVAIMTDTVYGLAASSADGSLYQKLKDAKERPENKPFPLMVGSL 79

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
             ++  A +     HL K F PG +T + ++     + P    + +T   R+      + 
Sbjct: 80  DQIESVAELTDRDRHLMKTFMPGAVTFIFNI--KDGVFPFL-GDQRTIGIRMADDIWVQD 136

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I   G+P+ +PSANRSG  +  +   ++   +   I  ++ G     G+ S++ ++  +
Sbjct: 137 IINKVGYPIWLPSANRSGFDTAISSDMVI-DQLDGRIEGVVLGE-CVGGVSSSVFDITGD 194

Query: 187 KKVRILRPGGLEIETLKRAISV 208
           + ++ LR G + +E + + + +
Sbjct: 195 E-IKCLRQGVITLEEINKEVGL 215


>gi|88801030|ref|ZP_01116579.1| hypothetical protein MED297_05069 [Reinekea sp. MED297]
 gi|88776233|gb|EAR07459.1| hypothetical protein MED297_05069 [Reinekea sp. MED297]
          Length = 185

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 5/182 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+ A E L  G  IA PTE VYGL  D  N  A+ R+  IK+RP    +I     +   +
Sbjct: 7   LQIAAETLLEGGVIAYPTEGVYGLGCDPFNADAVSRILTIKRRPVHKGVILVADRLERFE 66

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              + ++       K  WPGP T V+       +    T    T   RV      + L E
Sbjct: 67  PFLNPLNDAQRAQLKAHWPGPYTWVIPH--NGRLPEWVTGGRPTVAVRVSAHPLARALSE 124

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   SANRSG+ S+     +  +++ ++I  ++ G +   G  S I ++   ++ 
Sbjct: 125 RSGLPIVSTSANRSGRPSLVTSLQV-RTALGQDIDCLLHGRVQTPGQASQITDLISGQRF 183

Query: 190 RI 191
           R 
Sbjct: 184 RD 185


>gi|195978151|ref|YP_002123395.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974856|gb|ACG62382.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 197

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 6/192 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    E + AG  + +PTETVYGL   + N  A+  +Y +KKRP    +  +V+D   + 
Sbjct: 2   ITHLIETIKAGGALILPTETVYGLFAQALNEEAVNAVYRLKKRPCDKAMNLNVADFESIL 61

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
             +   P  L  L + F PGPLT++L   + T       + LKT  FR+P       I  
Sbjct: 62  AFSKQQPAYLSKLYEAFLPGPLTIILKANAKT--PYWINSGLKTVGFRLPSHPLTAEIIR 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SG  S      I+ +    ++    D      G +STI+++    KV 
Sbjct: 120 ATGPLIGPSANLSGSKSGKCFNDIVKA-FDGKVDGYADDAY-LTGKDSTILDLSS-PKVS 176

Query: 191 ILRPGGLEIETL 202
           ILR G +  E L
Sbjct: 177 ILRQGAITKEQL 188


>gi|195585167|ref|XP_002082361.1| GD25261 [Drosophila simulans]
 gi|194194370|gb|EDX07946.1| GD25261 [Drosophila simulans]
          Length = 248

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 9/199 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++ D  AL+ A + L  G  IA+PT+TVYGLA D+ N TAI+RLYEIK R    P+  
Sbjct: 32  VCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 91

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V +I  +++      LS  L     PGPLT+V++  +      L+ +  K    R+P  
Sbjct: 92  CVHNIEALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSK-IGIRIPDF 150

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G      +  L
Sbjct: 151 NFMRDLCAVWQEQPLALTSANRSSAPSSLQVSE--FRSLWPQLGAVFDAGRIGLTEERRL 208

Query: 177 ESTIVNVQCEKKVRILRPG 195
            ST++++       I+R G
Sbjct: 209 ASTVIDLATPGYFEIVRAG 227


>gi|189233999|ref|XP_001811736.1| PREDICTED: similar to CG33786 CG33786-PA, partial [Tribolium
           castaneum]
          Length = 210

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 10/197 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + I D +A   A + L +G  IA+PT+TVYGLA D+ N T+I +LY IK R    P+   
Sbjct: 5   VPIRDPHAEALAVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAIC 64

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
           + D+  VK  A +  L   L +   PGP+T++L   ST D      A       R+P   
Sbjct: 65  LGDVPQVKAWAKIGHLPQGLLESLLPGPVTVILTSASTLDKSLSFNAK---VGIRIPDYH 121

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLES 178
           F + L    G PLA+ SAN S + S   +       +  ++  + DGG           S
Sbjct: 122 FIRALARGLGRPLALTSANLSNEPSSLTINE--FQDLWAQVGAVFDGGNLGLDDSRRRAS 179

Query: 179 TIVNVQCEKKVRILRPG 195
           T++++       I+R G
Sbjct: 180 TVIDLSECGLFTIVRHG 196


>gi|332708684|ref|ZP_08428656.1| translation factor SUA5 [Lyngbya majuscula 3L]
 gi|332352538|gb|EGJ32106.1| translation factor SUA5 [Lyngbya majuscula 3L]
          Length = 213

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 9/200 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L+ G  +  PT+TVY +  D    +A++R+  +K+     PL    S +S + 
Sbjct: 17  IEKIRESLEDGAVMLYPTDTVYAIGCDVHVKSAVQRVRRLKQLSNDKPLTFLCSSLSNIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
           K+A V   +  + K   PGP T +L   +T  +  L  + N KT   RVP     + L+ 
Sbjct: 77  KYARVSDPAYRIMKHLIPGPYTFLLP--ATKLVPKLVMSPNRKTTGIRVPDHNVCQALLS 134

Query: 130 TYGHPLAIPSANRSGQISIT----NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             GHP+   SA+   Q   T      +  L  ++   + +I+D  +      STI+++  
Sbjct: 135 ALGHPIISTSAHLPNQDGDTPTVGLERAKLFDALDGLVDIIVDNDLEPGFQVSTILDLTS 194

Query: 186 EKKVRILRPGGLEIETLKRA 205
            + + + +  G + E +   
Sbjct: 195 SEPMMVRQGLGWD-EAIAWI 213


>gi|29840271|ref|NP_829377.1| Sua5/YciO/YrdC family protein [Chlamydophila caviae GPIC]
 gi|29834619|gb|AAP05255.1| Sua5/YciO/YrdC family protein [Chlamydophila caviae GPIC]
          Length = 285

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 17/219 (7%)

Query: 4   MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           MS  D +  LR+A ++L  G  IA PT+TVYGLAV   +P A  ++Y +K R    PL+ 
Sbjct: 1   MSGADPDFFLRQAADYLHQGKVIAFPTDTVYGLAVALNSPNAQEKIYSLKHRERGKPLVI 60

Query: 63  HVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +V+ +  ++K     +   ++ LA+ F PGPLTL++D       H  S  + +   FR+P
Sbjct: 61  YVNTLEDIEKFSGCPLSSQAMKLAQEFLPGPLTLLVD-------HRNSRFSQEKLGFRIP 113

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++LI+  G PL   SAN S        + ++     ++I +I   G    GLEST
Sbjct: 114 SLPVVERLIDLSG-PLLGTSANISNFPPAVVSEEVVEDFPNEDIFII--PGQCSFGLEST 170

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
           ++       ++I R G +  + ++  +   +E CV + +
Sbjct: 171 VI---STDPLKIYREGIISRQAIEEIMGETIEPCVTQHA 206


>gi|88705951|ref|ZP_01103659.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71]
 gi|88699665|gb|EAQ96776.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71]
          Length = 208

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +R+A + +  G  I  PT++ Y L     +  A+ R+  I+K    +       D+S
Sbjct: 14  ARLVRQAADIVRGGGVIVYPTDSAYALGCHIGDKGALDRIRRIRKLDDRHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PGP T +L   +      L  A  KT   RVP    T+ L
Sbjct: 74  EIATYARVDNSVYRLLKQHTPGPYTFILRATTEVP-RRLMQAKRKTVGLRVPENAITQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G        + +   +  E+ L+IDGG   +   +T+V++  E+
Sbjct: 133 LGDLGEPLMSVSLIMPGDELPLIDPYEIRELLEHEVDLVIDGGYCGM-EATTVVDLADEE 191

Query: 188 KVRILRPGG 196
            + +    G
Sbjct: 192 PMVLRAGKG 200


>gi|319951890|ref|YP_004163157.1| translation factor sua5 [Cellulophaga algicola DSM 14237]
 gi|319420550|gb|ADV47659.1| translation factor SUA5 [Cellulophaga algicola DSM 14237]
          Length = 192

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  E L  G  I  PT+TV+G+  D+ N  A+ ++Y +KKR     +IC V++  
Sbjct: 8   QEEINKCIEILSKGGLILYPTDTVWGIGCDATNEEAVAKIYALKKRENTKTMICLVANDF 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
           M++KH S  P   +        P T+V D      +     A   T   RV    F + L
Sbjct: 68  MLEKHVSAVPEVAYDIIDLATKPTTIVYDNPKG--VAKNLVAEDNTLAIRVASDKFCQYL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCE 186
           I  +  P+   SAN +G+ +    + I  + +   +  +++    +  G  S+I+ +  +
Sbjct: 126 ISNFKKPIVSTSANIAGETTPQTFQEISIAILKG-VDYVVNLHQDQNSGTPSSIIKLGND 184

Query: 187 KKVRILRP 194
             V+I+R 
Sbjct: 185 GVVKIIRE 192


>gi|163751675|ref|ZP_02158894.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99]
 gi|161328414|gb|EDP99570.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99]
          Length = 185

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 7/181 (3%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  E ++ G  IA PTE VYGL  D  N  AI +L  +K+RP    LI   SD S +  +
Sbjct: 8   EISELIENGGVIAYPTEAVYGLGCDPDNDVAIEKLLGLKQRPWQKGLILVASDYSQLAPY 67

Query: 74  ASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
                L+    +     WPGP T ++ + S  DI  L   +  +   RV      + +  
Sbjct: 68  LDDTQLTTKQLESVFSKWPGPFTFIMPIRS--DISKLLCGSFNSLAVRVSAHPGIQAICN 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   SAN +GQ    ++  + ++     I     G +      STI++    K +
Sbjct: 126 NLGKPLVSTSANITGQQPAMSLDEV-TAQFEGVIAGTATGELGLDANPSTIIDALSGKVL 184

Query: 190 R 190
           R
Sbjct: 185 R 185


>gi|89890533|ref|ZP_01202043.1| SUA5/YciO/YrdC/YwlC domain protein [Flavobacteria bacterium BBFL7]
 gi|89517448|gb|EAS20105.1| SUA5/YciO/YrdC/YwlC domain protein [Flavobacteria bacterium BBFL7]
          Length = 216

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 5/186 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R+A   L  G  I  PT+T+YG+  D+ N  AI  LY+IKKR     LI  V    M
Sbjct: 33  EDVREAVTALKKGKVILYPTDTIYGIGCDATNYDAIEELYKIKKRDRSKSLIILVDSFEM 92

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           + ++    P            PLT++ D      +     A   T   RV      + LI
Sbjct: 93  LDRYIEEVPEMAWQVLKLNKKPLTIIYDRPKA--VAENLIAADNTLAIRVTNDPVCRALI 150

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCEK 187
                P+   SAN SG+ +       +S  +   +  I+D  ++K  +  S+I+ +  + 
Sbjct: 151 RGLRKPIVSTSANLSGEKTPVGFID-ISEELKSRVDHILDLPLAKTNVPPSSIIKISNDG 209

Query: 188 KVRILR 193
            ++ILR
Sbjct: 210 TMKILR 215


>gi|332969027|gb|EGK08067.1| Sua5/YciO/YrdC/YwlC family protein [Kingella kingae ATCC 23330]
          Length = 206

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 5/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++ACE +  G    +PT++ Y L     + TA+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQACEIVRQGGVAVLPTDSCYALVCQLGDKTAMERILSIRKIDLKHHLTLLCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD       K+  PG  T +L          L     KT   RVP       L
Sbjct: 74  ELGTYAKVDNSQFRQLKMTTPGAYTFILPASKEVPNRTL-HPKRKTIGLRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +          +  + +   +   + L+IDGG       +T++++    
Sbjct: 133 LRELGEPLLSCTLMLPEDDEPLSDPYEIRERLEHSVDLVIDGGWCGT-EPTTVIDMTDGT 191

Query: 188 KVRILRPGGLEI 199
           ++  +R G  +I
Sbjct: 192 EL--VRQGKGDI 201


>gi|94499923|ref|ZP_01306459.1| Sua5/YciO/YrdC/YwlC family protein [Oceanobacter sp. RED65]
 gi|94428124|gb|EAT13098.1| Sua5/YciO/YrdC/YwlC family protein [Oceanobacter sp. RED65]
          Length = 182

 Score =  163 bits (413), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 5/179 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A + L     IA PTETV+GL  D  +P A++R+  IKKR     LI    +I      
Sbjct: 7   QASKVLQHSGVIAYPTETVWGLGCDPWDPAALQRIVSIKKRDQHKGLILVAGNIGQFDFL 66

Query: 74  A-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETY 131
              ++       +  WPGP T ++       + PL      T   RV P    + L + +
Sbjct: 67  LNEINEQQRAKLESLWPGPYTFLVPH--KNRVQPLVHGRFSTVAIRVSPHPRVQALCKYF 124

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           G P+   SAN SGQ ++ +        +  E+  I+DG +      S I+++   +++R
Sbjct: 125 GGPIVSTSANYSGQPTVRSAVQA-RRVLGHELDFILDGPVGLFPGPSHIIDLASGRQLR 182


>gi|320546678|ref|ZP_08040990.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equinus ATCC
           9812]
 gi|320448733|gb|EFW89464.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus equinus ATCC
           9812]
          Length = 198

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 8/192 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L +G  + +PTETVYGL   + N  A+  +Y++K+RP    +  +V+D   +   +  
Sbjct: 6   EILQSGGAVILPTETVYGLFAQAMNEDAVEHVYQLKRRPKEKAMNLNVADYETILAFSKN 65

Query: 77  DPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHP 134
            P  L      F PGPLT++L   +   +     + L T  FR+P    T +LI+  G P
Sbjct: 66  QPSYLKKIYDTFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPKHPQTLELIKKTG-P 122

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S      I          L  D  ++  G++STI+++  E   RILR 
Sbjct: 123 LIGPSANISGKESGKIFADIKKQFGNNVTGLSDDAALT--GVDSTILDLSGE-SARILRQ 179

Query: 195 GGLEIETLKRAI 206
           G +  E L   +
Sbjct: 180 GAITKEELLACV 191


>gi|190570595|ref|YP_001974953.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213019153|ref|ZP_03334960.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190356867|emb|CAQ54241.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995262|gb|EEB55903.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 195

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 5/195 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +    +   L    PTETVY LA ++    +I ++Y IKKR    PL   VSD+  +   
Sbjct: 4   EVINAIKNNLLACFPTETVYALACNALGKESIEKIYRIKKRSQNKPLSIFVSDVDSLTNI 63

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           A V    ++L   F PGP+T +L L   + +         +   R+P       ++    
Sbjct: 64  AKVKEEYINLINYFSPGPMTYILPLQDNSILPNEFF--KDSIGIRIPDHPIAISILNELK 121

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+   S N SG+ SI   +  +  SI + +  +I+      G+ESTI+++  +K +++L
Sbjct: 122 TPVVATSINISGEKSICKARD-IPQSIKQHLSAVIEDDELVSGIESTIIDLTGDK-IKVL 179

Query: 193 RPGGLEIETLKRAIS 207
           R G + ++T+    S
Sbjct: 180 RKGKISLQTINNEFS 194


>gi|171779354|ref|ZP_02920318.1| hypothetical protein STRINF_01199 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281971|gb|EDT47402.1| hypothetical protein STRINF_01199 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 199

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 8/188 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  + +PTETVYGL   + N  A+  +Y +K RP    +  +V+D   +   +  
Sbjct: 6   EILQTGGAVILPTETVYGLFAQAMNEEAVEHVYRLKCRPKDKAMNLNVADYETILAFSKN 65

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHP 134
            P  L  L   F PGPLT++L   +   +     + L T  FR+P    T  LI+  G P
Sbjct: 66  QPTYLKKLYDAFLPGPLTIILQ--ANDRVPAWINSGLSTIGFRIPKHPQTLALIKETG-P 122

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SGQ S       +       +    D   S  G++STI+++  +   RILR 
Sbjct: 123 LIGPSANISGQESGKVFAQ-IQKQFDNSVEGFADD-SSITGVDSTILDLSGD-FARILRQ 179

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 180 GAITKEDL 187


>gi|21910337|ref|NP_664605.1| hypothetical protein SpyM3_0801 [Streptococcus pyogenes MGAS315]
 gi|28895912|ref|NP_802262.1| hypothetical protein SPs1000 [Streptococcus pyogenes SSI-1]
 gi|21904533|gb|AAM79408.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28811162|dbj|BAC64095.1| hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 196

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 5   ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 64

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 65  EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPNHPITAALIQKTGP 122

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR 
Sbjct: 123 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 179

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 180 GAITKEEL 187


>gi|330445591|ref|ZP_08309243.1| yrdC domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489782|dbj|GAA03740.1| yrdC domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 206

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  ARLIKQAVEIIKNGGVVVYPTDSGYALGCQLENKAALERICQIRRLNEKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  VD ++  L +   PG  T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYTRVDNVAFRLLRNNTPGAYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G  +  +    +   +   + LI+ GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTSLILPGNDTTESDPDEIRDKLEHAVDLIMHGGYLGE-QPTTVIDF-SDG 190

Query: 188 KVRILRPGGLEIETLK 203
           ++ ++R G  ++   +
Sbjct: 191 EIEVVRVGAGDVTPFE 206


>gi|225631196|ref|ZP_03787894.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591104|gb|EEH12288.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 195

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 5/197 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    +   L +  PTETVY LA ++ +  +I ++Y+IKKR    PL   VSDI  + 
Sbjct: 2   VSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLT 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           K A V    + L   F PGP+  +L L +   +         +   R+P       ++  
Sbjct: 62  KIAKVKERYIDLINHFSPGPIAYILPLKNNNILPNEFF--KDSIGIRIPEHPIAISILNK 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   S N SG+ S+      +  SI + + ++I+      G+ESTI+++  E K++
Sbjct: 120 LKVPIVATSTNISGKESVCKAND-IPQSIKQHLSVVIEDDELVSGIESTIIDLT-EDKIK 177

Query: 191 ILRPGGLEIETLKRAIS 207
           +LR G + ++T+  A S
Sbjct: 178 VLREGAISLQTVNNAFS 194


>gi|301064000|ref|ZP_07204465.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
 gi|300441911|gb|EFK06211.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
          Length = 209

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L+ G  IA PT+T YG+  D  N   I+ +Y +K RP   P       ++ + 
Sbjct: 28  IDRVSEILEQGGVIAYPTDTFYGIGCDLYNKKGIQHIYRLKNRPLKKPFSFVCDGLNEIS 87

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           K+A V   +    K   PGP T +L+   T  +  +     KT   RVP    T+ ++ T
Sbjct: 88  KYALVSNYAYKTMKRLLPGPYTFILE--GTRLVPKIMLTKRKTVGIRVPNNNITRAIVRT 145

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G P+   SA              +  +    + +IIDGG+      S++V++  ++   
Sbjct: 146 LGRPIISTSAGFDE-------PRAIEDAYGVNLDVIIDGGL-LYPNPSSVVSLIDDEP-E 196

Query: 191 ILRPG 195
           I+R G
Sbjct: 197 IIREG 201


>gi|271502209|ref|YP_003335235.1| SUA5/yciO/yrdC domain-containing protein [Dickeya dadantii Ech586]
 gi|270345764|gb|ACZ78529.1| SUA5/yciO/yrdC domain protein [Dickeya dadantii Ech586]
          Length = 189

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 11/196 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS  +S  L    + L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI  
Sbjct: 1   MSNVNSKDLTLLLQQLREERVIAYPTEAVFGLGCDPDSEVAVERLLALKQRPREKGLILI 60

Query: 64  VSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            ++   +  +  +  LS          WPGP+T V+   + T      T    +   RV 
Sbjct: 61  AANFQQLASYIELSALSDMQRQTIFATWPGPVTWVIPARAET--PDWLTGRFNSLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 +L   +G PL   SAN SGQ     V+ + ++   +  P +++G +      S 
Sbjct: 119 DHPLVAQLCLAFGKPLVSTSANLSGQPPCRTVREV-TAQFGESFP-VLNGEVGGRLNPSE 176

Query: 180 IVNVQCEKKVRILRPG 195
           I +        +LR G
Sbjct: 177 IRDALTG---EMLRQG 189


>gi|215430188|ref|ZP_03428107.1| hypothetical protein MtubE_05805 [Mycobacterium tuberculosis
           EAS054]
 gi|289753378|ref|ZP_06512756.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           EAS054]
 gi|289693965|gb|EFD61394.1| Sua5/YciO/YrdC/YwlC family protein [Mycobacterium tuberculosis
           EAS054]
          Length = 188

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 5/185 (2%)

Query: 26  AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLA 84
            +PT+TVYG+  D+ + +A+  L   K R    P+   V     ++    S+   +  L 
Sbjct: 2   VMPTDTVYGIGADAFDSSAVAALLSAKGRGRDMPVGVLVGSWHTIEGLVYSMPDGARELI 61

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSG 144
           + FWPG L+LV+    +            T   R+P       +     P+A+ SAN SG
Sbjct: 62  RAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIELLREVGPMAVSSANISG 119

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204
                + +    S +   + + +D G S+    STIV++      R+LR G +  E +  
Sbjct: 120 HPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLRQGPVSTERIAE 177

Query: 205 AISVE 209
            + V+
Sbjct: 178 VLGVD 182


>gi|84488926|ref|YP_447158.1| hypothetical protein Msp_0096 [Methanosphaera stadtmanae DSM 3091]
 gi|84372245|gb|ABC56515.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091]
          Length = 208

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 11/214 (5%)

Query: 1   MQIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           M+++ I D    N L K    L  G  +  PT+T+YG+ VD  N  A++++Y  KKR   
Sbjct: 1   MEMVYIVDNPNKNELNKIRSMLGQGKLVVYPTDTIYGIGVDINNIDAVKKVYMTKKRSYD 60

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            P+   + DI+ VK+ A V     H+     PGP TL+L     ++I  + TAN      
Sbjct: 61  KPISICLHDITQVKEVAIVTDEIEHIINELLPGPYTLLL--RKKSNIPDILTANTNIIGI 118

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P    T  L + +  P+   SAN S   +  N+   +   +   I + ID G      
Sbjct: 119 RIPDNKITHSLTKDF--PITSTSANLSNIQTPDNITD-IKKQLGDNIDIYIDCGKKIKNQ 175

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVEL 210
            STI+++  +   +I+R      E + + + ++L
Sbjct: 176 PSTIIDLTQQNP-KIIRQ-HKNNELINKILKIDL 207


>gi|313200705|ref|YP_004039363.1| sua5/ycio/yrdc/ywlc family protein [Methylovorus sp. MP688]
 gi|312440021|gb|ADQ84127.1| Sua5/YciO/YrdC/YwlC family protein [Methylovorus sp. MP688]
          Length = 209

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E L  G  +A PT++ Y L     N  A  R+  I+     +       ++S
Sbjct: 14  PRLIAQAVEILRNGGVVAYPTDSSYALGCVVGNKDAQDRIRAIRGVDDDHLFTLVCRNLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +L          L      T   RVP    T+ L
Sbjct: 74  ELAVYAQVDNSQFRLLKANTPGQYTFILKATREVP-RRLQHPKRSTLGLRVPDHAVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S    G+  + N    +   +  ++ L+ID G       +T++++  + 
Sbjct: 133 LEALDEPLLSMSLQLPGEEDVLNEAWEIRDRLEHQLGLVIDAGAC-SATPTTVIDLTGDS 191

Query: 188 KVRILRPGGLEI 199
            + ++R G   +
Sbjct: 192 PI-LVRAGAGSL 202


>gi|225350880|ref|ZP_03741903.1| hypothetical protein BIFPSEUDO_02454 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158336|gb|EEG71578.1| hypothetical protein BIFPSEUDO_02454 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 238

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 7/214 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +      +L +A E +  G  I IPT+TVYG+A D RN  AIR+++  K+RP    L
Sbjct: 19  MSEIRTISDESLAQAVEIVRDGGLIVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSL 78

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116
              +  I  ++K     P+ L  L+ +F PG   P+ +  D  +   +         T  
Sbjct: 79  QVLLPSIESMEKLHLDLPVPLNRLSAMFMPGAFSPIAVADDDCTLATVRTDPATGKVTQG 138

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     PLA  SANRSG  S   V   + + +   + L +DGG +   +
Sbjct: 139 VRIPNSTAALRVLRATGPLAATSANRSGDESAQTVDEAVQA-LGDAVDLYLDGGATPGHV 197

Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAISV 208
            ST+V  +      + ILR G +    +++A+++
Sbjct: 198 ASTVVAADPHGRDGIAILREGVIHEPVIRKALTL 231


>gi|289706367|ref|ZP_06502725.1| Sua5/YciO/YrdC/YwlC family protein [Micrococcus luteus SK58]
 gi|289556862|gb|EFD50195.1| Sua5/YciO/YrdC/YwlC family protein [Micrococcus luteus SK58]
          Length = 243

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 5/199 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            NA+ +A E L     + +PT+TVYG+  D+ +P A+  L   K R    P    ++D  
Sbjct: 17  ENAVARAREVLADRGCVVLPTDTVYGIGADAFSPLAVAVLLAAKGRSRTMPPPVLIADRR 76

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           ++   A  V   +  LA+ FWPG LTL+L    T       T    T   RVP     + 
Sbjct: 77  VMSGLAYDVPEEAEALAERFWPGALTLILKSQPTLTWDLGET--RGTVALRVPDDAVARE 134

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SANR+G  + T       S + + + L +D G  +    STIV+     
Sbjct: 135 LLYAVGPMAVSSANRTGMDAATTAD-AARSMLGESVALYLDAGPRESRDPSTIVDCTV-T 192

Query: 188 KVRILRPGGLEIETLKRAI 206
             R+ R G + +E L+  +
Sbjct: 193 PFRVARQGSVPLEELRAVV 211


>gi|25011158|ref|NP_735553.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           NEM316]
 gi|76798420|ref|ZP_00780660.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           18RS21]
 gi|77410541|ref|ZP_00786902.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           CJB111]
 gi|77413279|ref|ZP_00789475.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 515]
 gi|23095557|emb|CAD46766.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586215|gb|EAO62733.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           18RS21]
 gi|77160666|gb|EAO71781.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae 515]
 gi|77163489|gb|EAO74439.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           CJB111]
 gi|319745081|gb|EFV97407.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae ATCC
           13813]
          Length = 198

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 6/191 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L+    + +PTETVYG+   + +  A+  +YE+KKRP    +  ++ D   + K++  
Sbjct: 6   QILEDHGAVIMPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNICDFETILKYSKN 65

Query: 77  DPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            P  L  L   F PGPLT++L+  ++ ++     + L +  FR+P       +     PL
Sbjct: 66  QPTYLKQLYDAFLPGPLTIILE--ASQEVPHWINSGLLSVGFRMPKHPVTLDMIANHGPL 123

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             PSAN SG  S       +      ++  I D   +  G++STI+++  + +V+ILR G
Sbjct: 124 IGPSANISGCDSGRVFSE-IQKQFNHQVLGIEDD-KALTGVDSTIIDLSGD-RVKILRQG 180

Query: 196 GLEIETLKRAI 206
            +  E L   I
Sbjct: 181 AITQEVLTATI 191


>gi|161506044|ref|YP_001573156.1| putative ribosome maturation factor [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867391|gb|ABX24014.1| hypothetical protein SARI_04225 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 200

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 8/193 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q+ +   + ++  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI
Sbjct: 10  QVNNNLPTGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLI 69

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
              +    +K +     L+    K     WPGP+T V    +TT      T    +   R
Sbjct: 70  LIAASFEQLKPYIDDSILTTAQRKAVFDCWPGPVTFVFPASATT--PRWLTGRFDSLAVR 127

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           V        L   YG PL   SAN SG      V+ +  +    + P++ +G        
Sbjct: 128 VTDHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPMV-EGATGGRLNP 185

Query: 178 STIVNVQCEKKVR 190
           S I +    +  R
Sbjct: 186 SEIRDALTGELFR 198


>gi|304314044|ref|YP_003849191.1| Sua5-related protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587503|gb|ADL57878.1| Sua5-related protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 207

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 11/209 (5%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M I  I   N     + +A   ++ G  +  PT+T+YGL V++ +  ++R+L+ IK R  
Sbjct: 1   MIIRKIRRENPSQKVIDEAISVMERGGAVIYPTDTIYGLGVNALDGESVRKLFRIKGRAP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P+   VS +S + + +     ++ + +   PGP T++L+      +  + T       
Sbjct: 61  DKPVSICVSGVSEIPRFSKPSEHAMEVIRRILPGPYTVLLE--KKDLVPDILTGGSSKVG 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            RVP     + I     P+   SAN SG+    N   I+      E+ L++D G      
Sbjct: 119 VRVPDDEVCRRISAR-FPVTATSANISGKQPSANPHDIMGDL---EVDLMLDAGECDSTE 174

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRA 205
            ST+V++  E    +LR G  + E + R 
Sbjct: 175 PSTVVDLTVEPPA-VLRMGRGDPEVIHRI 202


>gi|298372929|ref|ZP_06982919.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298275833|gb|EFI17384.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 212

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 8/191 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSD 66
           + + + K  E L  G  I  PT+TVY    D  +P AI ++  +K        +     D
Sbjct: 22  NEHQIAKVIEVLKNGGVIIYPTDTVYAFGCDIFHPKAIEKICRLKHLNPQKSRMAIVCQD 81

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +S +  +A +   +  L K   PG  T +L+        P    + KT   R+P      
Sbjct: 82  LSNISNYAKISTDTFKLLKKNLPGAFTFLLNGSRQL---PSILKDRKTIGIRMPKNNIAL 138

Query: 126 KLIETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            ++   G+P+   S      I+       +L+      + ++IDGG       STIV+  
Sbjct: 139 DIVRQLGNPIFTTSVIAIDDITEYETDPELLTEKYEDVVDMVIDGGFGD-NTPSTIVDCT 197

Query: 185 CEKKVRILRPG 195
             +   I+R G
Sbjct: 198 QNEP-EIIRQG 207


>gi|149370609|ref|ZP_01890298.1| hypothetical protein SCB49_14135 [unidentified eubacterium SCB49]
 gi|149356160|gb|EDM44717.1| hypothetical protein SCB49_14135 [unidentified eubacterium SCB49]
          Length = 186

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 3/186 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + KA E L  G  I  PT+TV+G+  D+ NP AI ++Y +KKR     LIC V D  
Sbjct: 2   KEEIFKALEVLKKGGLILYPTDTVWGIGCDATNPEAIAKVYALKKRVETKSLICLVHDFK 61

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           M+ +     P   +    +   P T+V D      I     A   T  FRV    F+K L
Sbjct: 62  MLNQFVEDIPEVAYDILKYAEKPTTIVYD--DPIRIAENIVAPDNTLGFRVTDDAFSKNL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +  P+   SAN SGQ +  + K I    +     ++        G  S I+ +  + 
Sbjct: 120 VRKFRWPVVATSANVSGQKTPKSFKDISQEILDGVDYVVNLNRNKPSGKPSAIIKLSKDG 179

Query: 188 KVRILR 193
            V+I+R
Sbjct: 180 GVKIIR 185


>gi|304396084|ref|ZP_07377966.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. aB]
 gi|304356453|gb|EFM20818.1| Sua5/YciO/YrdC/YwlC family protein [Pantoea sp. aB]
          Length = 206

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A ++L+ G  I  PT++ Y L        A+ R+  I++    +       D+S
Sbjct: 14  PRLINQAVDYLNKGSVIVYPTDSGYALGCRLEEKGAMERICRIRQLDGHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  ++ V   +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSVYSQVGNSAFRLLKNNTPGNYTFILKATKEVP-RRLMNEKRKTIGLRVPSNPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S    G     +    +  SI K + LIIDGG +     +T+V++  + 
Sbjct: 133 LEALNQPMMSTSLILPGNDFTESDPEEIQHSIGKLVDLIIDGG-TLGQQPTTVVDLTTDA 191

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 192 P-EIVREG 198


>gi|237742936|ref|ZP_04573417.1| SUA5 protein [Fusobacterium sp. 4_1_13]
 gi|229430584|gb|EEO40796.1| SUA5 protein [Fusobacterium sp. 4_1_13]
          Length = 217

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V  
Sbjct: 25  IKKGSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVPD 84

Query: 79  ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
               L   LAK FWPG LT++L       I  +  +   T   R+P      K+I+  G 
Sbjct: 85  KNRELLKKLAKAFWPGALTVIL--KKKKHIPSIMVSGGDTIGVRIPNFDLAIKIIDLAGG 142

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR
Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200

Query: 194 PGG 196
            G 
Sbjct: 201 KGA 203


>gi|50914207|ref|YP_060179.1| hypothetical protein M6_Spy0861 [Streptococcus pyogenes MGAS10394]
 gi|50903281|gb|AAT86996.1| Sua5 [Streptococcus pyogenes MGAS10394]
          Length = 206

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 15  ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 74

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 75  EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTGP 132

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR 
Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 189

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 190 GAITKEEL 197


>gi|163752812|ref|ZP_02159936.1| hypothetical protein KAOT1_11667 [Kordia algicida OT-1]
 gi|161326544|gb|EDP97869.1| hypothetical protein KAOT1_11667 [Kordia algicida OT-1]
          Length = 186

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++K  + L  G  I  PT+TV+GL  D+ N  A+ ++Y++K R     LIC VSDI 
Sbjct: 2   TEEIQKTFDELQLGNTILYPTDTVWGLGCDATNSEAVAKIYQLKNREESKALICLVSDIR 61

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           M++++    P   +        P T++ D      I     A   T   R+P   F +KL
Sbjct: 62  MLERYVENIPDVTYDLLEAANRPTTIIYDNP--VGIAKNLVAADNTLAIRIPDDKFCQKL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           I  +  P+   SAN SGQ +  +    +S+ I   +  I++    K  +  STI+ ++  
Sbjct: 120 IRKFKRPIVSTSANISGQPTPKSFDE-ISNEIKTNVDYIVNLKDDKKAVKPSTIIQLRSN 178

Query: 187 KKVRILR 193
            +++I+R
Sbjct: 179 GEIKIIR 185


>gi|156932272|ref|YP_001436188.1| putative ribosome maturation factor [Cronobacter sakazakii ATCC
           BAA-894]
 gi|212277675|sp|A7MPF3|RIMN_ENTS8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|156530526|gb|ABU75352.1| hypothetical protein ESA_00043 [Cronobacter sakazakii ATCC BAA-894]
          Length = 190

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            ++A+    + L     IA PTE V+G+  D  + TA++RL E+K+RP    LI   ++ 
Sbjct: 6   PADAISFIVDVLKKEQVIAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANF 65

Query: 68  SMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
             +K +     L+    +     WPGP+T V     +T      T    +   RV     
Sbjct: 66  DQLKPYIDDAALTAEQREAVFARWPGPVTFVFPAKPST--PRWLTGRFDSLAVRVTNHPQ 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L E +G PL   SAN SG       + +L +    + P ++ G        S I + 
Sbjct: 124 VIALCEAFGKPLVSTSANLSGLEPCRTAQEVL-AQFGDDFP-VLHGATGGRQNPSEIRDA 181

Query: 184 QCEKKVR 190
              +  R
Sbjct: 182 LTGELFR 188


>gi|29349536|ref|NP_813039.1| hypothetical protein BT_4128 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570092|ref|ZP_04847501.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385032|ref|ZP_06994591.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14]
 gi|29341445|gb|AAO79233.1| putative Sua5/yciO/yrdC family protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251840473|gb|EES68555.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262176|gb|EFI05041.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14]
          Length = 204

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 9/202 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+  IK   P  N L   
Sbjct: 8   KNNNPQDLQRVTDILNDGGLIIYPTDTMYAIGCHGLKERAIERICRIKDIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A V      L K   PGP T +L+    T+  P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVGNNEFKLMKHNLPGPFTFILN---GTNRLPKIFRNRKEVGIRMPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSGQIS--ITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +                ++       + L+IDGGI  I   ST+
Sbjct: 125 IIREIARLLDAPIMTTTLPYDEHEDLEYMTDPELIDEKFGDIVDLVIDGGIGGI-EPSTV 183

Query: 181 VNVQCEKKVRILRPGGLEIETL 202
           V    ++   I+R G   +E +
Sbjct: 184 VKCTEDEP-EIVRQGKGWLEGI 204


>gi|56808654|ref|ZP_00366379.1| COG0009: Putative translation factor (SUA5) [Streptococcus pyogenes
           M49 591]
 gi|209559425|ref|YP_002285897.1| Sua5/YciO/YrdC family protein [Streptococcus pyogenes NZ131]
 gi|209540626|gb|ACI61202.1| Sua5/YciO/YrdC family protein [Streptococcus pyogenes NZ131]
          Length = 196

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 5   ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 64

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 65  EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTGP 122

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR 
Sbjct: 123 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 179

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 180 GAITKEEL 187


>gi|50121220|ref|YP_050387.1| hypothetical protein ECA2292 [Pectobacterium atrosepticum SCRI1043]
 gi|49611746|emb|CAG75195.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 206

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ EFL  G  I  PT++ Y L        A+ R+  I+   + +       D+S
Sbjct: 14  PRLINQSVEFLHKGGVIVYPTDSGYALGCMLGEKNALERICRIRDLGSDHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSTYAHVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     +    +   + K + LII GG S     +T++++  E 
Sbjct: 133 LAALNEPLMSTTLMLQGNDFAESDPEEIQERLGKLVDLIIHGG-SLGQQPTTVIDLT-ES 190

Query: 188 KVRILRPG 195
             R+ R G
Sbjct: 191 VPRVAREG 198


>gi|238792973|ref|ZP_04636603.1| Ribosomal modification protein RimN [Yersinia intermedia ATCC
           29909]
 gi|238727827|gb|EEQ19351.1| Ribosomal modification protein RimN [Yersinia intermedia ATCC
           29909]
          Length = 190

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S AL      L     +A PTE V+GL  D  +  A+  L  +K+RP    LI   ++ 
Sbjct: 6   NSGALSDVLRALQQEEVVAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANY 65

Query: 68  SMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +     LS+   +     WPGP+T V+   + T      T    +   RV     
Sbjct: 66  EQLKPYVDDSTLSMAQRETLFSCWPGPVTWVIPACANT--PRWLTGTFGSLAVRVSDHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L   YG PL   SAN SG         +        +P ++ G +      S I + 
Sbjct: 124 VQQLCSQYGKPLVSTSANLSGHEPCRTEAEV-RMQFGPSLP-VLSGEVGGRLNPSEIRDA 181

Query: 184 QCEKKVR 190
              K+ R
Sbjct: 182 LTGKQFR 188


>gi|195336176|ref|XP_002034718.1| GM19771 [Drosophila sechellia]
 gi|194126688|gb|EDW48731.1| GM19771 [Drosophila sechellia]
          Length = 325

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 9/199 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++ D  AL+ A + L  G  IA+PT+TVYGLA D+ N TAI+RLYEIK R    P+  
Sbjct: 109 VCAVGDKAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 168

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V +IS +++      LS  L     PGPLT+V++         L+ +  K    R+P  
Sbjct: 169 CVHNISALRRFGQAAHLSDELLTRLLPGPLTIVIERTVQLSNRFLNPSTSK-IGIRIPDF 227

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G      +  L
Sbjct: 228 NFMRDLCGVWQEQPLALTSANRSSAPSSLQVSE--FRSLWPQLGAVFDAGRIGLTEERRL 285

Query: 177 ESTIVNVQCEKKVRILRPG 195
            ST++++       I+R G
Sbjct: 286 ASTVIDLATPGYFEIVRAG 304


>gi|330720127|gb|EGG98531.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC2047]
          Length = 182

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 7/187 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + D++ L  A   L  G  +A PTE V+GL  D  N  A+R+L  +K+RP    LI   +
Sbjct: 1   MNDAD-LHNAVVALRNGELVAYPTEAVWGLGCDPMNEAAVRKLLNLKRRPVEKGLILVAA 59

Query: 66  DISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            I   + + S   L   H  +  WPG  T V+ +  T  +    T    +   RV     
Sbjct: 60  SIKQFEPYLSTINLEQRHQLEASWPGFQTWVVPVPDT--VPYWLTGQHSSIALRVSTHPL 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            +KL + +  PL   SAN +G +   + + +   S   +   I+ G +      S+I+++
Sbjct: 118 IQKLCQAFAGPLVSTSANPAGHLPALSAEEV--HSYFDDQAFIVPGELGGADAPSSIIDL 175

Query: 184 QCEKKVR 190
              K +R
Sbjct: 176 VTGKSLR 182


>gi|311742467|ref|ZP_07716276.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM
           15272]
 gi|311314095|gb|EFQ84003.1| Sua5/YciO/YrdC/YwlC family protein [Aeromicrobium marinum DSM
           15272]
          Length = 207

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 7/203 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           + + I   N     + +A E + +G  IA PT++ Y L     +  A+ R+  I+     
Sbjct: 3   RFIDIHPENPQARNVEQAVEIIRSGGLIAYPTDSGYALGAQIGSADALTRIRSIRDLDDK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D + +     VD       K   PGP T +L          L  A  +T   
Sbjct: 63  HHFTLVCHDFAQLGHVVQVDNAVFRAVKAATPGPYTFILPATREVP-KRLLQAKKRTVGV 121

Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + L+   G PL   +    G+         ++ ++   I  ++D G   +G 
Sbjct: 122 RIPDHVVTQALVTALGEPLLSSTLILPGETDPMTTAWEIAEALDGRIEAVVDAGDEVVGR 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEI 199
            +T+V++  +   ++LR G  ++
Sbjct: 182 PTTVVDL-SDGHAQVLREGAGDV 203


>gi|166363887|ref|YP_001656160.1| hypothetical protein MAE_11460 [Microcystis aeruginosa NIES-843]
 gi|166086260|dbj|BAG00968.1| hypothetical protein MAE_11460 [Microcystis aeruginosa NIES-843]
          Length = 213

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 10/203 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++++ C  L  G  +  PT+TVY +  D    +A+ R+ +IK+     PL    S +S
Sbjct: 14  QRSIQEICHALKNGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKQLSNDKPLTFLCSSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            + ++A V   +  + +   PGP T +L   +T  +  +      KT   RVP     + 
Sbjct: 74  NISEYAVVSDYAYKIMRRVIPGPYTFLLP--ATKLVPKVVMNPKRKTTGIRVPDHVICRT 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHI----LSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++ET  +P+   SA+   Q      K +    L  ++   + LII+ G +     STIV+
Sbjct: 132 ILETLENPIISSSAHLPDQEGDFPTKGLESARLFDALDHIVDLIIEDGSAPGSEVSTIVD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRA 205
              ++   + +  G     L++ 
Sbjct: 192 FTGDQPDIVRQGLGWP--ELQQW 212


>gi|90406707|ref|ZP_01214900.1| Sua5/YciO/YrdC family protein [Psychromonas sp. CNPT3]
 gi|90312160|gb|EAS40252.1| Sua5/YciO/YrdC family protein [Psychromonas sp. CNPT3]
          Length = 187

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L  A + L+    IA PTE+V+GL  D  +P A++++ +IK+RPA   LI   ++  
Sbjct: 3   KTSLTNALKVLNNQGVIAYPTESVFGLGCDPDSPDALQKILKIKQRPAHKGLILIAANTK 62

Query: 69  MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            ++ +A      P  +   +  WPGP+T ++   +  ++ PL   + ++   RV      
Sbjct: 63  QLQDYADFSQLSPAQIARMQATWPGPVTWIVP--AKKNLQPLIKGDFESVAVRVTAHPIV 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDGGISKIGLESTIVNV 183
            +L   +  P+   SAN SGQ +  N   +    +    +  I+   +S  G  S I + 
Sbjct: 121 SELCTLFNKPIISTSANISGQDACQNAAQVQKMFVDTPLLETIVQASVSAFGSPSQIYDA 180

Query: 184 QCEKKVR 190
              K++R
Sbjct: 181 LTGKRLR 187


>gi|291568165|dbj|BAI90437.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 222

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 13/199 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L  G  +  PT+TVY +  D    +A++++ +IK+     PL    S +S + 
Sbjct: 17  IEQINDALKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
            +A V   +    K   PG  T VL   +T  +  L  +   KT   RVP       ++E
Sbjct: 77  DYAIVTDEAYRTIKKLIPGSYTFVLP--ATKQVPKLVMSPKRKTTGIRVPDHPVCLAILE 134

Query: 130 TYGHPLAIPSANRSGQISIT---------NVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           + G+P+   SA+   +   +           K  L  ++   + +I+D G       STI
Sbjct: 135 SLGNPVISTSAHIKEEDEPSALIRKIPQNYDKFQLFDALENLVDIIVDDGADLDYQVSTI 194

Query: 181 VNVQCEKKVRILRPGGLEI 199
           +++  +  V + R  G E 
Sbjct: 195 IDLSADDPVLVRRGKGWEA 213


>gi|325955237|ref|YP_004238897.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922]
 gi|323437855|gb|ADX68319.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922]
          Length = 207

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 9/197 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSDI 67
             A+ +  E L  G  I  P++TVYGL  D  N  A+  L  +K             +D+
Sbjct: 14  EKAIDQVVEVLKQGGLIIYPSDTVYGLGCDITNYKAMENLARLKGVKLDKSQFSIVCNDL 73

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-K 125
           S +      +   +  + K   PGP T VL         PL+    KT   RVP     +
Sbjct: 74  SHLSNFTRPISNSTFKVLKRALPGPFTFVLQASGNL---PLAYKGKKTVGIRVPDHLVPR 130

Query: 126 KLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +++E  G+P+A  S     +I   T    +++    K + ++ID G     + S+I++  
Sbjct: 131 RIVEKLGNPIASTSIYDEDEILEYTTDPELIAEKWDKLVDVVIDSGYGD-NVASSIIDAT 189

Query: 185 CEKKVRILRPGGLEIET 201
            E ++ ILR G  +I  
Sbjct: 190 -ENEMVILREGKGDINE 205


>gi|15675120|ref|NP_269294.1| hypothetical protein SPy_1143 [Streptococcus pyogenes M1 GAS]
 gi|19746090|ref|NP_607226.1| hypothetical protein spyM18_1103 [Streptococcus pyogenes MGAS8232]
 gi|71910678|ref|YP_282228.1| SUA5 protein [Streptococcus pyogenes MGAS5005]
 gi|306827353|ref|ZP_07460640.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes ATCC
           10782]
 gi|13622279|gb|AAK34015.1| hypothetical protein SPy_1143 [Streptococcus pyogenes M1 GAS]
 gi|19748262|gb|AAL97725.1| hypothetical protein spyM18_1103 [Streptococcus pyogenes MGAS8232]
 gi|71853460|gb|AAZ51483.1| SUA5 protein [Streptococcus pyogenes MGAS5005]
 gi|304430500|gb|EFM33522.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes ATCC
           10782]
          Length = 196

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 5   ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 64

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 65  EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTGP 122

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR 
Sbjct: 123 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 179

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 180 GAITKEEL 187


>gi|19705289|ref|NP_602784.1| SUA5 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19713254|gb|AAL94083.1| SUA5 protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 217

 Score =  162 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 97/200 (48%), Gaps = 10/200 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I  I+D        E +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI
Sbjct: 9   KISDISDDKW-TLLSEEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFSSPLI 67

Query: 62  CHVSDISMVKKHASVDPLSLHLAKL----FWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             +S +  V++ A V   +  L K     FWPG LT++L   S   I  +  +   T   
Sbjct: 68  ALLSSVDKVEEVAYVSDKNRELLKKLSKVFWPGALTVIL--KSKEHIPSIMVSGGDTIGV 125

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      K+I+  G  LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G 
Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGE 184

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            STI+++  +   +ILR G 
Sbjct: 185 ASTIIDLTSDVP-KILRKGA 203


>gi|333029883|ref|ZP_08457944.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM
           18011]
 gi|332740480|gb|EGJ70962.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides coprosuis DSM
           18011]
          Length = 203

 Score =  162 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 10/204 (4%)

Query: 1   MQIM-SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMN 58
           M++  S  D   +++  + L+ G  I  PT+T+Y +        AI ++ EIK   P  N
Sbjct: 3   MKLYDSNNDPQKIQQVIDILNDGGIIIYPTDTMYAIGCHCMKERAIEQICEIKGIDPRKN 62

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
            L     D+S + ++A +      + K   PGP T +L+  +     P    N K    R
Sbjct: 63  NLSLICYDLSTISEYAKMSNTVFKIMKANLPGPFTFILNGTNKL---PKIFRNRKEVGIR 119

Query: 119 VPCG-FTKKLIETYGHPLAIPSANR--SGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
           +P       + +    P+   +     +          ++     K + L+IDGG     
Sbjct: 120 MPNNEIIMDITKALEFPIMTTTVPLGENEDTGFLTNPELIYEKFGKIVDLVIDGGTGDYS 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEI 199
             STIV+   +  V I R G  E+
Sbjct: 180 -ASTIVDCTGD-YVEIARQGKGEL 201


>gi|283835700|ref|ZP_06355441.1| hypothetical protein CIT292_10092 [Citrobacter youngae ATCC 29220]
 gi|291068379|gb|EFE06488.1| Sua5/YciO/YrdC/YwlC family protein [Citrobacter youngae ATCC 29220]
          Length = 190

 Score =  162 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A E L     IA PTE V+G+  D  + TA+ RL  +K+RP    LI   ++   +K
Sbjct: 10  IAAAIEVLKQEKVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAANFDQLK 69

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +     L+    +     WPGP+T V    +TT      T    +   RV        L
Sbjct: 70  PYIDDSTLTDAQRQAVFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVVAL 127

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            + YG PL   SAN SG      V+ +  +    + P +++G        S I +    +
Sbjct: 128 CQAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGTDFP-VVEGETGGRLNPSEIRDALTGE 185

Query: 188 KVR 190
           + R
Sbjct: 186 QFR 188


>gi|222825112|dbj|BAH22269.1| Sua5/YciO/YrdC/YwlC family protein [Wolbachia endosymbiont of Cadra
           cautella]
          Length = 195

 Score =  162 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 5/195 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +    +   L    PTETVY LA ++    +I ++Y IKKR    PL   VS+I  +   
Sbjct: 4   EVINAIKNNLLACFPTETVYALACNALGKESIEKIYRIKKRSQNKPLSVFVSNIDSLINI 63

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
           A V    + L   F PGP+T +L L   + +         +   R+P       ++    
Sbjct: 64  AKVKEEYIDLINYFSPGPMTYILPLQDNSILPNEFF--KDSIGIRIPDHPIAISILNELK 121

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            P+   S N SG+ SI   +  +  SI + +  +I+      G+ESTI+++  +K +++L
Sbjct: 122 TPVVATSINISGEKSICKARD-IPQSIKQHLSAVIEDDELVSGIESTIIDLTGDK-IKVL 179

Query: 193 RPGGLEIETLKRAIS 207
           R G + ++T+    S
Sbjct: 180 RKGKISLQTINNEFS 194


>gi|238752653|ref|ZP_04614124.1| Ribosomal modification protein RimN [Yersinia rohdei ATCC 43380]
 gi|238709080|gb|EEQ01327.1| Ribosomal modification protein RimN [Yersinia rohdei ATCC 43380]
          Length = 190

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 9/192 (4%)

Query: 4   MSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           MS T++N +       L     IA PTE V+GL  D  +  A+  L  +K+RP    LI 
Sbjct: 1   MSKTENNVVFSDVLRALQQEQVIAYPTEAVFGLGCDPDSENAVNALLALKQRPWQKGLIL 60

Query: 63  HVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             ++   +K + +   LS    +     WPGP+T V+     T      T +  +   RV
Sbjct: 61  IAANYEQLKPYVNDSALSDTQRETLFSCWPGPVTWVIPARPET--PRWLTGHFDSLAVRV 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 ++L   YG PL   SAN SGQ     V  +        +P +++G +      S
Sbjct: 119 SDHPLVQQLCLQYGKPLVSTSANLSGQEPCRTVAEV-RMQFGPSLP-VLEGQVGGRLNPS 176

Query: 179 TIVNVQCEKKVR 190
            I +    K+ R
Sbjct: 177 EIRDALTGKQFR 188


>gi|296328533|ref|ZP_06871052.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154342|gb|EFG95141.1| Sua5/YciO/YrdC/YwlC family protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 217

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 98/200 (49%), Gaps = 10/200 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I  I+D        E +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI
Sbjct: 9   KISDISDDKW-TLLSEEIKKGSLIIYPTDTVYGLGAIVTNEQSINNIYLAKSRSFSSPLI 67

Query: 62  CHVSDISMVKKHASVDP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             +S +  V++ A V      L   L+K FWPG LT++L   S   I  +  +   T   
Sbjct: 68  ALLSSVDKVEEVAYVSDKNRELLKKLSKAFWPGALTVIL--KSKEHIPSIMVSGGDTIGV 125

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P      K+I+  G  LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G 
Sbjct: 126 RIPNLDLAIKIIDLAGGILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGE 184

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            STI+++  +   +ILR G 
Sbjct: 185 ASTIIDLTSDVP-KILRKGA 203


>gi|189461485|ref|ZP_03010270.1| hypothetical protein BACCOP_02144 [Bacteroides coprocola DSM 17136]
 gi|189431819|gb|EDV00804.1| hypothetical protein BACCOP_02144 [Bacteroides coprocola DSM 17136]
          Length = 188

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 8/190 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++KACE +  G  I  PT+TV+G+  D+ N  A++R+YEIK R     ++  V    
Sbjct: 3   KDEIKKACEIMQKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKHRADSKAMLVLVDSPV 62

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            V  +   V P++  L ++    P T++ D     ++ P   A   +   RV    F+K+
Sbjct: 63  KVDFYVSDVPPVAWDLIEMTT-KPFTIIYD--GARNLAPNLLAEDGSVGIRVTNETFSKE 119

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184
           L   +   +   SAN SGQ +       +S  I   +  ++D    + G    S+I+ + 
Sbjct: 120 LCFRFRKAIVSTSANISGQPAPAIFSE-ISEEIKNAVDYVVDFRREENGHPKPSSIIKLG 178

Query: 185 CEKKVRILRP 194
               V+++R 
Sbjct: 179 KGGVVKVIRE 188


>gi|227329887|ref|ZP_03833911.1| putative DNA topoisomerase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 189

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 8/176 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D S +  +     
Sbjct: 16  LQNEQVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLASYIDDSA 75

Query: 79  LSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           LS     +    WPGP+T VL    TT      T    +   RV      K+L + YG P
Sbjct: 76  LSDEQKAVMFSTWPGPVTWVLPAKHTTPQ--WLTGQFSSLAVRVSDHPLVKELCQRYGKP 133

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           L   SAN SGQ      + + S     + P ++ G +      S I +V   + +R
Sbjct: 134 LVSTSANLSGQPPCRTAQEV-SQQFGDDFP-VLVGDVGGRMNPSEIRDVLTGELIR 187


>gi|126330406|ref|XP_001380961.1| PREDICTED: similar to Ischemia/reperfusion inducible protein
           [Monodelphis domestica]
          Length = 394

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S AL  A   L AG  +A+PT+T+YG+A  +    A+  +Y +K R    PL   +  ++
Sbjct: 182 SEALTAAVTALRAGGLVAVPTDTLYGVACSACCSAALGAVYSLKGRSQTKPLAVCLGGVA 241

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + K+  V  +   L +   PGP+TLV++   + +++            R+P   F + L
Sbjct: 242 DIYKYCQVR-VPRELLEDLLPGPVTLVMER--SRELNKDLNPFTPLVGIRIPDHAFMRDL 298

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +  PLA+ SAN S Q S  NVK      +  ++ L+IDGG        +  L ST+V
Sbjct: 299 AQAFSGPLALTSANISSQPSSLNVKE--FQDLWPQLSLVIDGGPIGDVKSPECRLGSTVV 356

Query: 182 NVQCEKKVRILRPGG 196
           ++    K RI+RPG 
Sbjct: 357 DLSVPGKYRIIRPGC 371


>gi|91776228|ref|YP_545984.1| Sua5/YciO/YrdC/YwlC [Methylobacillus flagellatus KT]
 gi|91710215|gb|ABE50143.1| Sua5/YciO/YrdC/YwlC [Methylobacillus flagellatus KT]
          Length = 209

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 70/189 (37%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L  G  IA PT++ Y L     N  A  R+  I+     +       +++
Sbjct: 14  PRLINQAVAILRDGGVIAYPTDSSYALGCMLGNKEAQDRIRAIRGVDDSHHFTLICRNLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +L          L      T   RVP    T  L
Sbjct: 74  ELSTYAQVDNSQFRLLKANTPGQYTFILKATREVP-RRLQHPKRSTVGLRVPQHAVTLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   +    G  +  N    +   +  ++ L+ID G       +T++++  E 
Sbjct: 133 LEELNEPMLSMTLQLPGDDAPLNEAWEIRDQLEHQVDLVIDAGACAF-KPTTVIDLTGES 191

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 192 P-SLVRLGA 199


>gi|160891097|ref|ZP_02072100.1| hypothetical protein BACUNI_03544 [Bacteroides uniformis ATCC 8492]
 gi|156859318|gb|EDO52749.1| hypothetical protein BACUNI_03544 [Bacteroides uniformis ATCC 8492]
          Length = 204

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  +  PT+T+Y +        AI R+  +K   P  N L   
Sbjct: 8   KNNNPADLQQVVDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKNIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S V ++A VD  +  L K   PG  T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSKVSEYAKVDNSTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNS 124

Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             +++      P+   +        I       ++       + L+IDGGI   G E ST
Sbjct: 125 IIQEIARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGST 182

Query: 180 IVNVQCEKKVRILRPG 195
           +V+    +   I+R G
Sbjct: 183 VVDCTNGEP-EIIRQG 197


>gi|312863566|ref|ZP_07723804.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis
           F0396]
 gi|322517015|ref|ZP_08069904.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis ATCC
           49124]
 gi|311101102|gb|EFQ59307.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis
           F0396]
 gi|322124432|gb|EFX95929.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus vestibularis ATCC
           49124]
          Length = 201

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 8/196 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E LD G  I +PTETVYGL   + + +A+  +YE+K RP    +  +V+    +  
Sbjct: 6   KQLRESLDNGEAIVLPTETVYGLFAKAMDESAVNHVYELKNRPIDKAMNLNVASYEDILS 65

Query: 73  HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           ++   P  L  L   F PGPLT++L   +   +     + L T  FR+P    T++LI+ 
Sbjct: 66  YSKEQPKYLKQLYDAFLPGPLTIIL--KANDQVPRWINSGLATVGFRLPNHPVTRELIQA 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL  PSAN+SG+ S  +    + +    ++    D   + +G++STI+++      R
Sbjct: 124 EG-PLIGPSANKSGKESGRHFDD-IRAQFDFQVTGYRDDN-ALLGVDSTILDLSVS-PAR 179

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G +  + L  A+
Sbjct: 180 ILRQGKITKDDLLAAL 195


>gi|296135809|ref|YP_003643051.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12]
 gi|294339974|emb|CAZ88337.1| putative RNA-binding protein, yciO [Thiomonas sp. 3As]
 gi|295795931|gb|ADG30721.1| Sua5/YciO/YrdC/YwlC family protein [Thiomonas intermedia K12]
          Length = 211

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 4/192 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   L +G   AIPT++ Y L     +  A++RL +I++    + L    SD+S + 
Sbjct: 17  IKQAAAVLHSGGVAAIPTDSSYALVCHLDDKAAVQRLRQIRQVDERHHLTLLCSDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A VD     L +   PGP T +L+         +S  + KT   RVP       L+  
Sbjct: 77  NYARVDNRQYRLIRACTPGPYTFILEATKEVP-RRVSHPSRKTIGVRVPQNAVAHTLLVE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   +    G     N    +   +  ++ L++D G       +T+V++   + V 
Sbjct: 136 MAQPLLATTLILPGDEHALNDAADIRDQLEHQVDLVLDAGPCPS-EPTTVVDLCGAEPV- 193

Query: 191 ILRPGGLEIETL 202
           ++R G   ++ L
Sbjct: 194 VIRIGRGPLDAL 205


>gi|325104975|ref|YP_004274629.1| translation factor SUA5 [Pedobacter saltans DSM 12145]
 gi|324973823|gb|ADY52807.1| translation factor SUA5 [Pedobacter saltans DSM 12145]
          Length = 188

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + + KA E L  G  I  PT+T++G+  D+ NP A+ ++Y +K+R     LI  +   +
Sbjct: 3   KDEINKALEVLKNGGLILYPTDTIWGIGCDATNPEAVAKVYALKQRTESKSLIILLDTDN 62

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A+  P   +    +   P+T++       ++ P       +   RV    F K+L
Sbjct: 63  KLVSYANDIPDVAYDLIEYAENPMTIIFSNAK--NLAPNVINEDGSVGIRVTSHQFCKEL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLESTIVNVQC 185
           I+ +  P+   SAN SG  S  N  + +   I   +  I  ++   S     STI+ ++ 
Sbjct: 121 IQRFRKPIVSTSANVSGNPSPKNFSY-IDQEIKDGVDYIVNLEQEDSIEKKPSTIIKLEP 179

Query: 186 EKKVRILR 193
           + K   +R
Sbjct: 180 DGKFAFIR 187


>gi|51244753|ref|YP_064637.1| hypothetical protein DP0901 [Desulfotalea psychrophila LSv54]
 gi|50875790|emb|CAG35630.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 203

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 5/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  + L  G  I  PT+T YG+  D  N  A++ L ++KKRP   P     S ++ + 
Sbjct: 15  IKQVVQKLQQGAIICYPTDTGYGIGCDLLNQRAVKALMQLKKRPKNKPFSFMCSGLTHIS 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
           ++A V   +  L K   PGP T VL    +  +  +     KT   RVP     + LI  
Sbjct: 75  EYAHVSNTAYRLLKKNLPGPYTFVLP--GSKLVPKVMATKQKTVGIRVPDNPISQALITA 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G+P+   S               +  +I   I +IID G S     S+++++  ++   
Sbjct: 133 LGNPIVNTSVQLGEDDEPLADPFEIDLAIGNRIDIIID-GGSIYPDPSSVIDLTTDQP-E 190

Query: 191 ILRPG 195
           ILR G
Sbjct: 191 ILRVG 195


>gi|288800032|ref|ZP_06405491.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288333280|gb|EFC71759.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 189

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 6/191 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T S  ++ A E L  G  I  PT+TV+G+  D+ N +A+ R+YE+KKR     +IC V 
Sbjct: 1   MTQSEDIKNAVEVLKRGGLILYPTDTVWGIGCDATNESAVARVYELKKRADSKAMICLVD 60

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
             S V+++   V  ++  L +     P T++LD     ++ P   A   +   R+    F
Sbjct: 61  SDSRVQRYVKNVPNVAWDLME-LADKPTTIILD--DAVNLAPNLIAEDGSIAIRITREAF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVN 182
           +K+L   +  PL   SAN SG+ + +N + I+   I     +        K    S+I+ 
Sbjct: 118 SKELCYRFQKPLVSTSANISGEPTASNYRDIVQEIIDGVDYVCWTRRQEHKPHAPSSIIK 177

Query: 183 VQCEKKVRILR 193
           +    +V I+R
Sbjct: 178 LTKTGEVTIIR 188


>gi|320449794|ref|YP_004201890.1| Sua5/YciO/YrdC/YwlC family protein [Thermus scotoductus SA-01]
 gi|320149964|gb|ADW21342.1| Sua5/YciO/YrdC/YwlC family protein [Thermus scotoductus SA-01]
          Length = 197

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 17/198 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A E L  G  +A PT+TV+G+     +  A RR+Y +K R    PL   V+D+ 
Sbjct: 6   QKELQEAAETLRRGGLVAFPTDTVWGILARLEDEAACRRIYALKGRGEEKPLQVLVTDLE 65

Query: 69  MVKKHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
              K      +    L LA+ FWPG LT+V+      +I P  +    +   R+P     
Sbjct: 66  SALKLVDLGKLRDKFLRLAEAFWPGGLTVVVP---GQNIPPWIS-RDGSVGLRMPDHALL 121

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L+   G   A  S NRSG+  +   K          +  +  G    +GL S++V+++
Sbjct: 122 RELLRRVGGYAAATSLNRSGEPPVRTEKEA--REFG--VDYVFPGE--ALGLASSVVDLR 175

Query: 185 CEKKVRILRPGGLEIETL 202
                 +LR G +  E L
Sbjct: 176 TG---EVLREGAIPKEAL 190


>gi|85000901|ref|XP_955169.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303315|emb|CAI75693.1| hypothetical protein, conserved [Theileria annulata]
          Length = 703

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 11/188 (5%)

Query: 8   DSNALRKACE--FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           D N + +  +   ++ G  IAIPTETVYGLA +     ++ R++ IK RP  +PLI HV 
Sbjct: 72  DENEIFEIIKTILMEPGGLIAIPTETVYGLAGNIHLENSLLRIFSIKDRPFNDPLIVHVH 131

Query: 66  D-ISMVKKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +  ++    V+ +   L     + F PGPLT+V        I PL T        R P
Sbjct: 132 SFLYALRHLYDVNDVEAFLILFLAEKFAPGPLTIV--ARKAQSISPLLTNQTDFIAVRCP 189

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               T KL+E    PLA PSAN+ G IS T  +H+ +    +++  I+D G   IG+EST
Sbjct: 190 NNKVTLKLLEFIQVPLAAPSANKFGHISPTCPEHVKNEFPNEDL-YILDDGNCTIGIEST 248

Query: 180 IVNVQCEK 187
           I+ +   K
Sbjct: 249 IIKLTSNK 256


>gi|86142259|ref|ZP_01060769.1| Sua5/YciO/YrdC/YwlC family protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85831011|gb|EAQ49468.1| Sua5/YciO/YrdC/YwlC family protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 195

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 6/190 (3%)

Query: 8   DSNALRKACE---FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           D N + +  E    +  G  +  PT+TV+G+  D+ N  AI ++Y +KKR     LIC V
Sbjct: 7   DQNIINEVNESLGVIKRGGLLLYPTDTVWGIGCDATNADAIDKVYALKKRKESKALICLV 66

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGF 123
           SD+ M+ +     P   +    +   P T++ D      +         T   R V   F
Sbjct: 67  SDMKMLNQFIEEIPEVAYNILKYADQPTTIIYD--KPIRVAENLVGEDNTLGIRIVQDEF 124

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + LI+  G PL   SAN SG+ +      I    +     ++      K    STI+ +
Sbjct: 125 CRSLIKKMGRPLVSTSANISGEKTPMRFPEISKPILEGVDYIVNLQRKHKSTKSSTIIRL 184

Query: 184 QCEKKVRILR 193
             + +V++LR
Sbjct: 185 SNDGQVKVLR 194


>gi|317481004|ref|ZP_07940084.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36]
 gi|316902897|gb|EFV24771.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36]
          Length = 204

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  +  PT+T+Y +        AI R+  +K   P  N L   
Sbjct: 8   KNNNPADLQQVVDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKNIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S V ++A VD  +  L K   PG  T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSKVSEYAKVDNATFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNS 124

Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             +++      P+   +        I       ++       + L+IDGGI   G E ST
Sbjct: 125 IIQEIARLLDAPIMTTTLPHEDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGST 182

Query: 180 IVNVQCEKKVRILRPG 195
           +V+    +   I+R G
Sbjct: 183 VVDCTNGEP-EIIRQG 197


>gi|237743716|ref|ZP_04574197.1| SUA5 protein [Fusobacterium sp. 7_1]
 gi|256028220|ref|ZP_05442054.1| SUA5 protein [Fusobacterium sp. D11]
 gi|289766152|ref|ZP_06525530.1| SUA5 protein [Fusobacterium sp. D11]
 gi|229432747|gb|EEO42959.1| SUA5 protein [Fusobacterium sp. 7_1]
 gi|289717707|gb|EFD81719.1| SUA5 protein [Fusobacterium sp. D11]
          Length = 217

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V  
Sbjct: 25  IKKGSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVSD 84

Query: 79  ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
               L   LAK FWPG LT++L       I  +  +   T   R+P      K+I+  G 
Sbjct: 85  KNKNLLKKLAKAFWPGALTVILKRKEH--IPSIMVSGGDTIGVRIPNLDLAIKIIDLAGG 142

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR
Sbjct: 143 ILATTSANISGEATPKSYDE-LSETIKSKVDILIDSGKCKLGEASTIIDLTSDVP-KILR 200

Query: 194 PGG 196
            G 
Sbjct: 201 KGA 203


>gi|73666905|ref|YP_302921.1| translation factor SUA5 [Ehrlichia canis str. Jake]
 gi|72394046|gb|AAZ68323.1| translation factor SUA5 [Ehrlichia canis str. Jake]
          Length = 198

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 7/196 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA + L+    IA PTETVY LA D+ +  AI+++Y+IK R    PL   V +I+ +K
Sbjct: 2   ILKAIQALNNKHLIAFPTETVYALAGDAYSIEAIQKIYQIKGRSYNKPLSLLVGNINKIK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + +++   ++ + +   PGP+T VL + +   +      N  T   R+P      +++  
Sbjct: 62  QFSNLTDHAIKIIQKLSPGPITFVLPIHNYHKLPRQFFNN--TIGIRIPNHPIALEIVNK 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
             +P+   S N SGQ S+T   H +  +I K I + I+      G EST++++      +
Sbjct: 120 IENPVVGTSINISGQPSVT-AAHQIHETIKKHISVTIEDDSLVNGTESTVIDLTS---YK 175

Query: 191 ILRPGGLEIETLKRAI 206
           ILR G +  + L   I
Sbjct: 176 ILRAGAVAEKKLLTII 191


>gi|260599602|ref|YP_003212173.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Cronobacter turicensis z3032]
 gi|260218779|emb|CBA34127.1| Putative ribosome maturation factor rimN [Cronobacter turicensis
           z3032]
          Length = 190

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            ++A+    + L     IA PTE V+G+  D  + TA++RL E+K+RP    LI   ++ 
Sbjct: 6   PADAISSIVDVLKKEHVIAYPTEAVFGVGCDPDSETAVKRLLELKQRPMEKGLILIAANF 65

Query: 68  SMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
             +K +       P         WPGP+T V    ++T      T    +   RV     
Sbjct: 66  EQLKPYIDDAALTPEQREAVFACWPGPVTFVFPAKAST--PRWLTGRFDSLAVRVTNHPQ 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L E +G PL   SAN SG       + +L +      P ++ G        S I + 
Sbjct: 124 VIALCEAFGKPLVSTSANLSGLEPCRTAQEVL-AQFGDAFP-VLHGATGGRQNPSEIRDA 181

Query: 184 QCEKKVR 190
                 R
Sbjct: 182 LTGALFR 188


>gi|78357332|ref|YP_388781.1| translation factor SUA5 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219737|gb|ABB39086.1| translation factor SUA5 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 210

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 7/206 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q + +TD   + +A   L  G  +  PTET + +   + +  A+  +Y IK+RP+  PL 
Sbjct: 4   QTIPVTD---VNEAAVLLQEGKVVVYPTETFFAVGCLATDVRAVDAVYRIKRRPSGMPLP 60

Query: 62  CHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV- 119
             +     +    +V  PL   LA+LFWPGPL++++   ++  I  + T        RV 
Sbjct: 61  VIIGSAGQLGLVTAVSSPLVTRLAELFWPGPLSVLVT--ASDRIPAILTGETGRVAVRVT 118

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P      L    G  L   SAN SG+ ++T    +    + +   ++        G  ST
Sbjct: 119 PHPAAAALCTACGGALVSTSANISGRQAVTAASGLDPELVGQVAAVVDMPPAPAGGKPST 178

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205
           +V V     VRI+RPG +  + L+ A
Sbjct: 179 LVEVAGPAHVRIVRPGAVTEDALQTA 204


>gi|226941023|ref|YP_002796097.1| SUA5/YciO/YrdC/YwlC family protein [Laribacter hongkongensis HLHK9]
 gi|226715950|gb|ACO75088.1| SUA5/YciO/YrdC/YwlC family protein [Laribacter hongkongensis HLHK9]
          Length = 210

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 8/199 (4%)

Query: 2   QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  SI         +R+A + +  G  I  PT++ Y L     +  A+ R+  I++    
Sbjct: 3   QFFSIHPETPQARLIREAVKIVREGGVIVYPTDSCYALGCRLSDKKAMDRIITIRQLDLR 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       ++S +  +A VD     L K   PG  T +L          L     +T   
Sbjct: 63  HHFTLVCHNLSELGTYARVDNTVYRLLKSVTPGAYTFILQATKEVPRRTL-HPKRQTIGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+E  G P+   +    G+    +  + +  +I  ++ L+IDGG   +  
Sbjct: 122 RVPDNAIALALLEELGEPMLSCTLMLPGENEPPSDPYDIRDTIGPQVDLVIDGGYCGVD- 180

Query: 177 ESTIVNVQCEKKVRILRPG 195
            +T++++       ++R G
Sbjct: 181 PTTVIDLTSGAP-ELVRKG 198


>gi|253690146|ref|YP_003019336.1| SUA5/yciO/yrdC domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756724|gb|ACT14800.1| SUA5/yciO/yrdC domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 189

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 8/176 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV-- 76
           L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D S +  +     
Sbjct: 16  LHNEQVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLAPYIDDSV 75

Query: 77  -DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
                  +    WPGP+T VL    TT      T    +   RV      K+L + YG P
Sbjct: 76  LSDEQKAMMFSTWPGPVTWVLPAKRTTPQ--WLTGQFSSLAVRVSDHPLVKELCQRYGKP 133

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           L   SAN SGQ      + + S     + P ++ G +      S I +V   + +R
Sbjct: 134 LVSTSANLSGQPPCRTAQEV-SQQFGDDFP-VLAGDVGGRMNPSEIRDVLTGELIR 187


>gi|332521229|ref|ZP_08397687.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043322|gb|EGI79519.1| Sua5/YciO/YrdC/YwlC family protein [Lacinutrix algicola 5H-3-7-4]
          Length = 188

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 5/183 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   L  G  I  PT+TV+G+  D+ N  A++++Y++K R     LIC V++ SM++KH
Sbjct: 9   EAVTVLKQGGIILYPTDTVWGIGCDATNYNAVKKVYKLKNREESKALICLVNNYSMLEKH 68

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
               P   +        P T++ D  +   +     A   T   RV    F + LI+  G
Sbjct: 69  VDNVPNIAYDILDLAINPTTVIYDNPAG--VAENLIAEDNTLAIRVTQDKFCQHLIKYLG 126

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCEKKVRI 191
            P+   SAN +G  +  + K  +  +I K +  +++    K     STI+ +     V+I
Sbjct: 127 KPIVSTSANLAGNPTPKSFKE-IDEAILKGVDYVVNLQTEKRSTNPSTIIKLSNNGNVKI 185

Query: 192 LRP 194
           +R 
Sbjct: 186 IRE 188


>gi|270015172|gb|EFA11620.1| hypothetical protein TcasGA2_TC030645 [Tribolium castaneum]
          Length = 203

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + L +G  IA+PT+TVYGLA D+ N T+I +LY IK R    P+   + D+  VK  A
Sbjct: 3   AVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAICLGDVPQVKAWA 62

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
            +  L   L +   PGP+T++L   ST D      A       R+P   F + L    G 
Sbjct: 63  KIGHLPQGLLESLLPGPVTVILTSASTLDKSLSFNAK---VGIRIPDYHFIRALARGLGR 119

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNVQCEKKV 189
           PLA+ SAN S + S   +       +  ++  + DGG           ST++++      
Sbjct: 120 PLALTSANLSNEPSSLTINE--FQDLWAQVGAVFDGGNLGLDDSRRRASTVIDLSECGLF 177

Query: 190 RILRPG 195
            I+R G
Sbjct: 178 TIVRHG 183


>gi|86609790|ref|YP_478552.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558332|gb|ABD03289.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 237

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 24/212 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++R+    L  G  +  PT+TVY +  D+ +  A+ R+  IK+     PL      +S
Sbjct: 14  ARSIRRIAAALREGAVMLYPTDTVYAIGCDATHKQAVERVRRIKQLSNDKPLTFLCPSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPC-GFTKK 126
            +  +A V   +  L +   PGP T +L   +T  +  L      KT   RVP     + 
Sbjct: 74  RIAHYAQVTDSAYRLMRRLIPGPFTFLLP--ATKLVPKLVMEPKRKTTGIRVPDSAICQA 131

Query: 127 LIETYGHPLAIPSANRSGQI----------------SITNVKHILSS----SICKEIPLI 166
           L+E  G+P+   SA   G                     +   I ++     + K++ L+
Sbjct: 132 LLEELGNPIVSTSAKLGGDPVGSLDLSSGQAWEWESDPWDEGGIFAAEEMRQLEKQVDLV 191

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           +D    +    ST++++   + + +    G E
Sbjct: 192 LDDDAPRRAKVSTVIDLTGSEPLVVRAGLGYE 223


>gi|254796933|ref|YP_003081770.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str.
           Illinois]
 gi|254590181|gb|ACT69543.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia risticii str.
           Illinois]
          Length = 195

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 6/188 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L  G  +  PTETVY LA D+ N  A+ R+Y+IK+R     L   V+ IS ++
Sbjct: 2   IFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNIKKNLPVMVAGISQLE 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             AS +     L K   PGP+T +L    +  +             RVP      K++  
Sbjct: 62  SFASFNESQARLIKECCPGPVTFILKRKKSAHLRFRFPEK---VAVRVPDSKVALKILRG 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +  P+   S N SG+ ++++    + S + K +  II       G  S+I+++  ++ V 
Sbjct: 119 FNRPVFATSVNLSGRPAVSSFTQ-IGSYMKKRVSRIICDNRGVKGTASSIIDISGKRAV- 176

Query: 191 ILRPGGLE 198
           ++R G   
Sbjct: 177 LVRKGAFS 184


>gi|305667010|ref|YP_003863297.1| putative Sua5/yciO/yrdC family protein [Maribacter sp. HTCC2170]
 gi|88709245|gb|EAR01479.1| putative Sua5/yciO/yrdC family protein [Maribacter sp. HTCC2170]
          Length = 206

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSD 66
           +  A+ +  + L  G  I  PT+TVY L  D  N  A+ +L  IK             +D
Sbjct: 13  NPKAISRVVQSLRKGGLIIYPTDTVYSLGCDITNTRALEKLARIKGIKLEKANWSFVCAD 72

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           +S +  +   +D     + K   PGP T +L     ++  P      KT   RVP     
Sbjct: 73  LSNLSDYVRQIDTSVFKILKRALPGPYTFILP---GSNSLPKVFKKKKTIGIRVPNNSIP 129

Query: 126 K-LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           K L++  G+P+   S +   ++   T    ++       + ++IDGG     + ST++++
Sbjct: 130 KTLVQELGNPIVSTSIHDEDEVLEYTTDPELIHEKWGNIVDVVIDGGYGG-NIASTVIDL 188

Query: 184 QCEKKVRILRPGGLEIE 200
             ++ V ++R G   I+
Sbjct: 189 SQDE-VEVVREGKGAID 204


>gi|320532875|ref|ZP_08033646.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134905|gb|EFW27082.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 256

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 103/233 (44%), Gaps = 26/233 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + L+ ACE L AG  + +PT+TVYG+  ++ +  A+ RL   K R    P    V+D +
Sbjct: 19  PDPLQPACEHLRAGGLVILPTDTVYGIGCNAADAGAVERLLAAKGRGRQMPPPVLVADPA 78

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +    +  P + H L + FWPG LTLVLD   T       T    T   R+P       
Sbjct: 79  DLTGIVAQVPEAAHTLMEAFWPGALTLVLDADETLTWDLGETGG--TLAVRMPAHGLALN 136

Query: 127 LIETYGHPLAIPSANRSGQI-----------SITNVKHILS--------SSICKEIPLII 167
           L+   G PLA+ SAN +G                 V+ I           ++ +E  L++
Sbjct: 137 LLRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRDIEELTPGTGDVGAVGREDILLL 195

Query: 168 DGGISKIGLESTIVNVQC--EKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
           DGG +   + STIV +     +  RILR G L    L+R + V L     E +
Sbjct: 196 DGGATPGPVPSTIVTLAGAHARAPRILRQGVLARGDLERVVGVALSERTAEAA 248


>gi|121635430|ref|YP_975675.1| hypothetical protein NMC1726 [Neisseria meningitidis FAM18]
 gi|120867136|emb|CAM10903.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
          Length = 254

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 62  ERLIKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 121

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 122 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 180

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 181 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 239

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 240 EL--VRRGC 246


>gi|296876520|ref|ZP_06900571.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432513|gb|EFH18309.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus parasanguinis
           ATCC 15912]
          Length = 203

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 11/205 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+AG  + +PTETVYG+   + +  A+  +YE+K+RP    L  +V+D   ++ ++   P
Sbjct: 8   LEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPRDKALNLNVADEKTIRIYSKNQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLA 136
             L  L   F PGPLT++L   +   +     + L T  FR+P    T +LI  YG PL 
Sbjct: 68  SYLTKLIHSFLPGPLTIILQ--ANDKVPDWIHSGLDTVGFRIPAHPKTLELIRKYG-PLV 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG  S T  + I+S    + +P I D      G +STI+++   K  RILR G 
Sbjct: 125 GPSANLSGHASGTKYEAIVSE-FDQVVPGIEDDDF-LTGQDSTILDISGSK-ARILRQGS 181

Query: 197 LEIETLKRAISVELEYCVDETSTPQ 221
           +    L   ++   E   +E   PQ
Sbjct: 182 ITKTDL---LAQVPELSFEEDELPQ 203


>gi|170078316|ref|YP_001734954.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002]
 gi|169885985|gb|ACA99698.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7002]
          Length = 223

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L    + L AG  +  PT+TVY +  D     A++++ ++K+     PL    S +S
Sbjct: 14  QRDLEAIAQQLRAGAVMLYPTDTVYAIGCDLTAKQAVQKVRQLKRLANDKPLTFLCSSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            + ++A V   +  + K   PGP T +L   +T  +  L  +   ++   RVP     + 
Sbjct: 74  NISEYALVSDEAYRIMKRAIPGPYTFLLP--ATKQVPKLVMSPKRRSTGIRVPDHAICQG 131

Query: 127 LIETYGHPLAIPSANRSGQI-SITN---VKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           L++  G+P+   SA+   +          K  L  ++   + +IID         STI++
Sbjct: 132 LLQALGNPIISTSAHLPDEDGEPFTLGLEKARLFDALEPLVDIIIDSDSEPGTKTSTILD 191

Query: 183 VQCEKKVRILRPGGLEIETLKRAISV 208
             C+++  ++R G L  + L+  + V
Sbjct: 192 F-CDRQPTLIRKG-LGWDALEGWLDV 215


>gi|87119434|ref|ZP_01075331.1| putative translation factor [Marinomonas sp. MED121]
 gi|86164910|gb|EAQ66178.1| putative translation factor [Marinomonas sp. MED121]
          Length = 206

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 82/205 (40%), Gaps = 8/205 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     +R+A + +  G  I  PT+  Y L     + +A+ R+ +I++    
Sbjct: 3   QFFQIHPENPQARLIRQATDIIRNGGVIVYPTDCGYSLGCHIGDKSALDRIRQIRRLDDK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +  +A  D     L K   PGP T +    S      L     KT   
Sbjct: 63  HNFTLVCKDLSEISTYARFDNRLYRLLKHHTPGPYTFIFGATSEVP-RRLLHPKRKTIGI 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + L++  G P+   S     +       + +  ++  ++ L+IDGG   +  
Sbjct: 122 RIPENKIVQALLDELGEPIMSSSLILPNETLPMMDPYDIRDTLQHQLDLVIDGGYCGM-E 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIET 201
            +T++ +  +  + ILR G  +   
Sbjct: 181 PTTVIKMDLDD-MAILRQGAGDASA 204


>gi|254423359|ref|ZP_05037077.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7335]
 gi|196190848|gb|EDX85812.1| Sua5/YciO/YrdC/YwlC family protein [Synechococcus sp. PCC 7335]
          Length = 219

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 11/211 (5%)

Query: 2   QIMSIT-DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           ++  +T D   +    + L  G  +  PT+TVY +  D  + +AI+R+ ++K+     PL
Sbjct: 6   EVHPVTPDPRTINALRDDLRQGAIMLYPTDTVYAIGCDLSSKSAIKRVRQLKQLSNDKPL 65

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV 119
               + +S V  +A V   +  + K   PGP T +L   +T  +  L      +T   RV
Sbjct: 66  TFLCASLSNVASYAHVTDPAYKIMKRLIPGPYTFLLP--ATKAVPKLVINPKRRTTGIRV 123

Query: 120 PC-GFTKKLIETYGHPLAIPSA-----NRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           P       LIE  G+P+   SA       +     T  K +L   I K + +++D     
Sbjct: 124 PNSPLCLSLIEALGNPIISTSAASIVSRSTEDDIDTLSKVMLFDQIEKLVDVVVDSNTEL 183

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKR 204
               STIV+V     + I R  G + E ++ 
Sbjct: 184 GHQVSTIVDVTDGSPLVIRRGQGWQ-EAIEW 213


>gi|327395467|dbj|BAK12889.1| protein yrdC YrdC [Pantoea ananatis AJ13355]
          Length = 190

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S +L+     L     IA PTE V+GL  D  N +A+  L  +K+RP    LI   +D  
Sbjct: 7   SGSLQDCVNHLKQHAVIAYPTEAVFGLGCDPDNESAVMALLALKRRPVEKGLILIAADYG 66

Query: 69  MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            +  + S      +        WPGP+T V+     T      T    +   RV      
Sbjct: 67  QLMPYVSDHVLTAMQRERMFACWPGPVTFVVPAAPHT--PRWLTGQFDSLAIRVSDHPDV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +G PL   SAN SGQ     V  +         P +++G        S I +V 
Sbjct: 125 QALCRAFGKPLVSTSANLSGQPPCRTVDEVKR-QFGPAFP-VLNGNTGGRLNPSEIRDVI 182

Query: 185 CEKKVR 190
              ++R
Sbjct: 183 SGNQIR 188


>gi|325300388|ref|YP_004260305.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM
           18170]
 gi|324319941|gb|ADY37832.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM
           18170]
          Length = 203

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 8/198 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVS 65
            D + L+   + L+ G  I  PT+T+Y +   +     I ++  +K   P  N L     
Sbjct: 10  NDPDVLQHIVDILNDGGIIIYPTDTMYAMGCHALKERPIEKICRLKNLNPKKNNLSIICY 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           D+S + ++A V   +  L K   PGP T +L   S     P    N K    RVP     
Sbjct: 70  DLSNISEYAQVGNATFKLMKRNLPGPFTFILKADSRL---PKIFRNRKEVGIRVPGNPII 126

Query: 125 KKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           +++      P+   +        I       ++      E+ L+IDGGI  +   ST++N
Sbjct: 127 REICRLLDAPILTTTLPLHEGEDIEYVTDPELIDEKFGDEVDLVIDGGIGGV-EPSTVIN 185

Query: 183 VQCEKKVRILRPGGLEIE 200
              +    + +  G+ IE
Sbjct: 186 CCEDMPEIVRQGKGILIE 203


>gi|302802275|ref|XP_002982893.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii]
 gi|300149483|gb|EFJ16138.1| hypothetical protein SELMODRAFT_234090 [Selaginella moellendorffii]
          Length = 201

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 5/196 (2%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I + T  N +R A   L  G  I++PT+T+YGLA D+ +  A+ R+YEIK R A +PL 
Sbjct: 8   KIWAATQEN-VRHAIAALRHGDVISVPTDTLYGLAADACSRVALERIYEIKGRNAGSPLA 66

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             V+D+  +K++A +D L   L     PGP+TLVL+    +++       L +   R+P 
Sbjct: 67  VCVADVPDLKRYARIDHLPDALLHDLLPGPVTLVLNRGDKSELEKSLNPGLLSIGIRIPD 126

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             F + +   +   LA+ SAN S + S   V+      +  +   + D G    G   ST
Sbjct: 127 SDFIRSVARAFDGALALTSANTSSKPSSICVEE--FEHLWPQCAAVFDAGELSAGRAGST 184

Query: 180 IVNVQCEKKVRILRPG 195
           IV++  E   ++LR G
Sbjct: 185 IVDLTAEASFKVLRAG 200


>gi|92112840|ref|YP_572768.1| Sua5/YciO/YrdC/YwlC [Chromohalobacter salexigens DSM 3043]
 gi|91795930|gb|ABE58069.1| Sua5/YciO/YrdC/YwlC [Chromohalobacter salexigens DSM 3043]
          Length = 206

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +    L  G  IA PT++ Y L     +  AI ++  ++     +      SD+S
Sbjct: 14  KRLIDQTLTILRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLDDKHNFTLMCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PGP T +L+  S      L     ++   RVP    T  L
Sbjct: 74  EIGTYAKVDNAVFRLLKAHTPGPYTFILNATSEVP-RLLLHPKRRSIGVRVPDHRITHAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G+        ++       +  +IDGG   +   +T+V+V+ E 
Sbjct: 133 LDALGEPLMSVTLIPVGEDLPMTDPEVIRDRFGAHLDAVIDGGACHLD-PTTVVDVR-EI 190

Query: 188 KVRILRPG 195
              I+R G
Sbjct: 191 PPTIVREG 198


>gi|226943682|ref|YP_002798755.1| Sua5/YciO/YrdC/YwlC family protein [Azotobacter vinelandii DJ]
 gi|226718609|gb|ACO77780.1| Sua5/YciO/YrdC/YwlC family protein [Azotobacter vinelandii DJ]
          Length = 209

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 6/187 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A E +  G  I  PT+  Y L     N   + R+  +++    +      SD+S + 
Sbjct: 17  VRQAVEIVRGGGVIVYPTDASYALGCQLGNKAGLERIRRLRQLDDRHNFTLVCSDLSQLS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVP-CGFTKKLIE 129
             A VD  +  L K + PGP T +L   ++ ++  +      +T   R+P     + L+ 
Sbjct: 77  LFARVDTGAFRLLKTWTPGPYTFIL--HASREVPRIMLHPKRRTIGLRIPANPIAQALLA 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S    G+    +    +   + +++ LI+DGG   +   ST+V++  E + 
Sbjct: 135 ELGEPLMSASLILPGETLPLSDPEEMRRRLERQVDLIVDGGAGTL-EASTVVSLL-EGEP 192

Query: 190 RILRPGG 196
            +LR G 
Sbjct: 193 EVLRVGC 199


>gi|292489809|ref|YP_003532699.1| hypothetical protein EAMY_3346 [Erwinia amylovora CFBP1430]
 gi|291555246|emb|CBA23517.1| Uncharacterized protein yrdC [Erwinia amylovora CFBP1430]
 gi|312173992|emb|CBX82245.1| Uncharacterized protein yrdC [Erwinia amylovora ATCC BAA-2158]
          Length = 190

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 9/192 (4%)

Query: 4   MSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           M +    ++L +  E L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI 
Sbjct: 1   MKMNPEVDSLAQCVEQLAQSKVIAYPTEAVFGLGCDPDSEEAVMRLLALKQRPVEKGLIL 60

Query: 63  HVSDISMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             +D   +    + + L +   A++F  WPGP+T VL   STT      T    T   RV
Sbjct: 61  IAADYQQLMPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGRFTTLAVRV 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                   L   +G PL   SAN SG     +   +L +   ++ P ++ G        S
Sbjct: 119 SDHPDVIALCNAFGKPLVSTSANLSGLPPCRHAAEVL-AQFGRDFP-VLKGETGGRLNPS 176

Query: 179 TIVNVQCEKKVR 190
            I +V   + +R
Sbjct: 177 EIRDVLSGELIR 188


>gi|239816993|ref|YP_002945903.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110]
 gi|239803570|gb|ACS20637.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus S110]
          Length = 211

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L  G  +A+PT++ Y LA    +  A+ +L  I++    + L     D+S
Sbjct: 14  QRLLKQAAALLQRGEIVAVPTDSSYALACHLDDKDAVDQLRRIRQVDEKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PGP T +L+         +S    KT   RVP      +L
Sbjct: 74  ELANYARVDNKQYRLLKAATPGPYTFLLEATKEVP-RRVSHPQRKTIGLRVPDHKVLLEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           +  +G PL   +    G+    N    +     K+I  +ID G       +T+V++    
Sbjct: 133 LMLHGAPLLATTLIAPGETEALNDAQTIRERFEKQIGAVIDAGACPS-QPTTVVDLTPMG 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R G   +  L
Sbjct: 192 TGDDPVVVRQGRGTLAVL 209


>gi|330831504|ref|YP_004394456.1| putative ribosome maturation factor rimN [Aeromonas veronii B565]
 gi|328806640|gb|AEB51839.1| Putative ribosome maturation factor rimN [Aeromonas veronii B565]
          Length = 186

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 7/187 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N   +A   L     IA  TE V+GL  D  +  A++RL  IK+RP    LI   +D+ 
Sbjct: 2   PNEFEQAVAALQQEGVIAYATEAVFGLGCDPDSEVAVQRLLAIKQRPVEKGLILIAADVE 61

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            ++ +  +  LS   L   +  WPGP T ++   +TT      T   +T   RV      
Sbjct: 62  QLQDYIDLSQLSGEQLARVEASWPGPFTWIMPARATTPA--WLTGQFETLAVRVTAHPQV 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +G PL   SAN +G+     V   +   +  ++  I+ G +      S I + +
Sbjct: 120 QALCRAFGKPLVSTSANLTGEEPARRVAD-IGERLASKLAYILPGEVGGQANPSEIKDAR 178

Query: 185 CEKKVRI 191
               +R 
Sbjct: 179 TGAIIRP 185


>gi|304386703|ref|ZP_07368976.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ATCC
           13091]
 gi|304339218|gb|EFM05299.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ATCC
           13091]
          Length = 224

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 32  ERLIKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 91

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 92  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 150

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 151 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 209

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 210 EL--VRRGC 216


>gi|71903504|ref|YP_280307.1| SUA5 protein [Streptococcus pyogenes MGAS6180]
 gi|71802599|gb|AAX71952.1| SUA5 protein [Streptococcus pyogenes MGAS6180]
          Length = 206

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 15  ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 74

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 75  EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTGP 132

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR 
Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 189

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 190 GAITKEEL 197


>gi|254412598|ref|ZP_05026371.1| Sua5/YciO/YrdC/YwlC family protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196180333|gb|EDX75324.1| Sua5/YciO/YrdC/YwlC family protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 221

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 86/198 (43%), Gaps = 12/198 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L  G  +  PT+TVY +  D    +A+ R+  +K+     PL    S +S + 
Sbjct: 17  IEKIRDNLQDGAVMLYPTDTVYAIGCDLNVKSAVERVRRLKQLSNEKPLTFLCSSLSNIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
           ++A V   +  + K   PGP T +L   +T  +  L  +   KT+  RVP     + ++E
Sbjct: 77  EYAWVSDPAYRIMKRLIPGPYTFLLP--ATKLVPRLVMSPKRKTSGIRVPDHPVCQAILE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHI------LSSSICKEIPLIIDGGISKIGLESTIVNV 183
             G+P+   SA+   ++   N   +      L       + +I+D G       STI+++
Sbjct: 135 ALGNPVISTSAHLPDEMG--NFPTVGLETARLFDQFEGLVDIIVDDGSKPGVQVSTILDM 192

Query: 184 QCEKKVRILRPGGLEIET 201
             ++   + +  G +   
Sbjct: 193 TGDEPTILRKGLGAQAAM 210


>gi|218129310|ref|ZP_03458114.1| hypothetical protein BACEGG_00887 [Bacteroides eggerthii DSM 20697]
 gi|317475279|ref|ZP_07934545.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988487|gb|EEC54808.1| hypothetical protein BACEGG_00887 [Bacteroides eggerthii DSM 20697]
 gi|316908533|gb|EFV30221.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 204

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 11/196 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
               +  L++  + L+ G  I  PT+T+Y +        AI R+ ++K   P  N L   
Sbjct: 8   KNNSAADLQQVIDILNNGGIIIYPTDTMYAIGCHGLKERAIERICQLKAIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S + ++A  D  +  L K   PGP T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKFDNNTFKLMKRNLPGPFTFILN---GTVRLPKIFRNRKEVGIRMPDNP 124

Query: 123 FTKKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             ++L      P+   +        I       ++       + L+IDGGI   G+E ST
Sbjct: 125 IIQELARFLDAPIMTTTLPYEENEDIEYCTDPELIDEKFGNIVDLVIDGGIG--GIESST 182

Query: 180 IVNVQCEKKVRILRPG 195
           IV+     +  I+R G
Sbjct: 183 IVDCT-NGEAEIVRQG 197


>gi|239917334|ref|YP_002956892.1| translation factor SUA5 [Micrococcus luteus NCTC 2665]
 gi|281414186|ref|ZP_06245928.1| translation factor SUA5 [Micrococcus luteus NCTC 2665]
 gi|239838541|gb|ACS30338.1| translation factor SUA5 [Micrococcus luteus NCTC 2665]
          Length = 244

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 8/215 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            NA+ +A E L     + +PT+TVYG+  D+ +P A+  L   K R    P    ++D  
Sbjct: 17  ENAVARAREVLADRGCVVLPTDTVYGIGADAFSPLAVAVLLAAKGRGRTMPPPVLIADRR 76

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           ++   A  V   +  LA+ FWPG LTL+L    T       T    T   RVP     + 
Sbjct: 77  VMAGLAYDVPEEAEALAERFWPGALTLILKSQPTLTWDLGET--RGTVALRVPDDAVARE 134

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SANR+G  + T       S + + + L +D G  +    STIV+     
Sbjct: 135 LLYAVGPMAVSSANRTGMDAATTAD-AARSMLGESVALYLDAGPRESRDPSTIVDCTV-T 192

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
             R+ R G + +E L+  +    +   +    P +
Sbjct: 193 PFRVARQGSVPLEELRAVVP---DLLAEGEEPPVA 224


>gi|311113382|ref|YP_003984604.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa ATCC 17931]
 gi|310944876|gb|ADP41170.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa ATCC 17931]
          Length = 349

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 16/209 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A E L+A   I IPT+TVYG+A D+ +   + +L   K R    P    + D++
Sbjct: 15  TEAVEAAREALNAHETIVIPTDTVYGIACDAFSHQGVSKLLADKGRSRTMPPPVLIFDLA 74

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +   A  +      L   FWPG LT++L    +       T    T   RVP   F  K
Sbjct: 75  ALAGVADEIPNDVYDLGNKFWPGALTIILYSYPSLTWDLGET--QGTVAVRVPDDKFALK 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIG--LE 177
           L+  +G PLA+ SAN++GQ +    +  L+  + +++ L++D G          +G    
Sbjct: 133 LLTEHG-PLAVSSANKTGQPAAAKAEEALN-QLGEDVTLVVDDGPRPAPQEDGSVGDSKP 190

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAI 206
           STI++        ++R G + +E L+  +
Sbjct: 191 STILDCTS-TPYVVVREGAITVEELREVV 218


>gi|221059790|ref|XP_002260540.1| dsRNA binding protein [Plasmodium knowlesi strain H]
 gi|193810614|emb|CAQ42512.1| dsRNA binding protein, putative [Plasmodium knowlesi strain H]
          Length = 545

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 18/221 (8%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++    ++A   + +PTETVYGL  +S +  ++R ++E+K RP  +P+I HV DI     
Sbjct: 18  KRLKAHIEADCLVGMPTETVYGLGGNSLSEKSLRNIFEMKNRPVSDPIISHVYDIKQAFD 77

Query: 73  ---HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
              H +V  +     L+K FWPGPL+++    +  ++  + TA+      R+P      +
Sbjct: 78  QLYHVNVFEMFTIYTLSKYFWPGPLSII--AKAKKELPLILTAHTGFCAVRMPRNNIAIE 135

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV--- 183
           +I+    P+A PSAN+   IS T   H+      KE  +I D G   IG+EST++ +   
Sbjct: 136 IIKVSQVPIAAPSANKFQHISPTTSAHVFQE-FEKEKIIIFDDGQCDIGIESTVLKLVKF 194

Query: 184 --QCEKKVRILRPGGLEIETL-KRAISVELEY---CVDETS 218
               ++K   L   G   E + +  ++ + EY   C DE  
Sbjct: 195 KKTGDRKPNRLSGAGETCEAIQEEEVTTDDEYEKECTDEME 235



 Score = 49.7 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 51/179 (28%)

Query: 193 RPGGLEIE---------TLKRAISVELEYCVDETSTPQ-------SPGMLKSHYAPRSQV 236
           R GG++ E         ++K A++  L  C+   +  +       SPG+L +HY+P    
Sbjct: 354 REGGIQAEGTLDGSVNGSVKAALNSCLSNCLGGNTAEEEEVQNEVSPGLLLTHYSPVVST 413

Query: 237 RLRAIHVNP------------------REALIRFGNVPIKNIENAIISLNLSKTG-KLKE 277
            L     +                   R  L+  G+    +  N +  +N+S  G   KE
Sbjct: 414 YLLDGAADEGEQSELMRKNPIAKISLGRCVLLDIGDSFELHQGNFLKYINISYEGVDTKE 473

Query: 278 -----AAFNLFNYMKIADDSGASS----IAFS-----SIPNHGLGIAINNRLERAAAPR 322
                   N F +++ A++         I  S      +    L  +I +R+ RAA+ R
Sbjct: 474 EQTKLVMKNFFLFLRQAEELAIEYQAEGILISILNLKCVDERNL--SIFDRIFRAASGR 530


>gi|224026554|ref|ZP_03644920.1| hypothetical protein BACCOPRO_03311 [Bacteroides coprophilus DSM
           18228]
 gi|224019790|gb|EEF77788.1| hypothetical protein BACCOPRO_03311 [Bacteroides coprophilus DSM
           18228]
          Length = 188

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 8/190 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++KACE +  G  I  PT+TV+G+  D+ N  A++R+YEIK+R     ++  V    
Sbjct: 3   KDEIKKACEVMQKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKQRSDSKAMLVLVDSPV 62

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            V  +    P ++  L +     PLT++ D     ++ P   A   +   RV    F+K+
Sbjct: 63  KVDFYVQDVPSVAWDLIE-LTTKPLTVIYD--GARNLAPNLLAEDGSVGIRVTNEEFSKQ 119

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184
           L   +   +   SAN SGQ +       +S  I + +  ++D    + G    S+I+ + 
Sbjct: 120 LCFRFRKAIVSTSANISGQPAPAVFSE-ISEEIKQAVDYVVDYRREETGHPKPSSIIKLG 178

Query: 185 CEKKVRILRP 194
              +V+++R 
Sbjct: 179 RTGEVKVIRE 188


>gi|238758797|ref|ZP_04619971.1| Ribosomal modification protein RimN [Yersinia aldovae ATCC 35236]
 gi|238703094|gb|EEP95637.1| Ribosomal modification protein RimN [Yersinia aldovae ATCC 35236]
          Length = 190

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++   +  +L+     L     IA PTE V+GL  D  +  A+  L  +K+RP    LI 
Sbjct: 1   MIKPEEDTSLKNVLRALQQDEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLIL 60

Query: 63  HVSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             ++   +K +     L+          WPGP+T V+     T +    T +  +   RV
Sbjct: 61  IAANYEQLKPYVDDSALTDAQRETIFSVWPGPVTWVIPASPETPL--WLTGSFDSLAVRV 118

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 +KL   YG PL   SAN SGQ      + +        +P ++ G +      S
Sbjct: 119 SAHPLVQKLCSQYGKPLVSTSANLSGQEPCRTEEEV-RIQFGSSLP-VLSGEVGGRLNPS 176

Query: 179 TIVNVQCEKKVR 190
            I +    K+ R
Sbjct: 177 EIKDALTGKQFR 188


>gi|212632972|ref|YP_002309497.1| Sua5/YciO/YrdC/YwlC [Shewanella piezotolerans WP3]
 gi|212554456|gb|ACJ26910.1| Sua5/YciO/YrdC/YwlC [Shewanella piezotolerans WP3]
          Length = 187

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 7/180 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
             + +  G  IA PTE VYGL  D  N  AI  L  IK+RP    LI    +   +  + 
Sbjct: 9   VADIIKGGGVIAYPTEAVYGLGCDPDNDDAINHLLSIKQRPWQKGLILVAGEYQQLLPYI 68

Query: 75  SVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
               LS      A+  WPGP T ++   +   +  L T +  +   RV      + L   
Sbjct: 69  DESQLSAEQLAFAQSKWPGPFTFIMP--AKPGLSTLLTGSFDSIAVRVTAHPDVQALCAA 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SG     +V+ +      + I  ++ G +      STI++ +    +R
Sbjct: 127 INKPIVSTSANLSGLEPALSVETV-KQQFNRAIFAVVMGELGTQTAPSTIIDARSGNIIR 185


>gi|212703472|ref|ZP_03311600.1| hypothetical protein DESPIG_01516 [Desulfovibrio piger ATCC 29098]
 gi|212673086|gb|EEB33569.1| hypothetical protein DESPIG_01516 [Desulfovibrio piger ATCC 29098]
          Length = 222

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 12/204 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
             A   L  G  +A PTET YGL   +    A+ R+Y+ K+RP   PL      + +++ 
Sbjct: 13  EDAARRLRDGGVLAFPTETFYGLGCCADQAVAVARVYQAKRRPVHMPLPLLAGSLELLRP 72

Query: 73  HASVDPLSLHLAKLFWPGPLTLVL-----DLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
           + +++     L   FWPGPLT+VL      L     + P        A  R  P     +
Sbjct: 73  YVTLEQAPEALLTAFWPGPLTVVLTARLTPLEGRRPLAPQLVNPRGKAAVRLTPHPLAAR 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSI-----CKEIPLIIDGGISKIGLESTIV 181
           L    G PL   SAN SGQ +   V   L   +       +  +++ G     G+ STIV
Sbjct: 133 LSCLAGEPLTASSANISGQ-AAARVPDELDERLLAALTGPDDGVVVSGPAPAGGVPSTIV 191

Query: 182 NVQCEKKVRILRPGGLEIETLKRA 205
                  +R+LR G + +E L+ A
Sbjct: 192 EPLAGTDLRVLRLGAVSLEALRAA 215


>gi|257069073|ref|YP_003155328.1| Sua5/YciO/YrdC/YwlC family protein [Brachybacterium faecium DSM
           4810]
 gi|256559891|gb|ACU85738.1| Sua5/YciO/YrdC/YwlC family protein [Brachybacterium faecium DSM
           4810]
          Length = 347

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 5/189 (2%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDP 78
            +G  I +PT+TVYG+  D+  P A++ L E K R    P    + D +++   A  V  
Sbjct: 24  RSGDLIVLPTDTVYGIGADAFTPEAVQALLEAKGRGRDTPPPVLIGDHAVLLALATDVPD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
               L +  WPG LT++L    +       T    +   R+P       +     PLA+ 
Sbjct: 84  YIEDLTEELWPGALTVILTAQPSLTWDLGET--RGSVALRMPEDEVALELLRRTGPLAVS 141

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SANR G+ +  +V    ++ +   + + +DGG +++G  STI++        I+R G + 
Sbjct: 142 SANRHGRPAAQSVLDA-ATQLGDSVEIYLDGGPARLGESSTILDATV-TPPEIVREGAIT 199

Query: 199 IETLKRAIS 207
            E +   + 
Sbjct: 200 KEQIIAVVG 208


>gi|126178386|ref|YP_001046351.1| Sua5/YciO/YrdC/YwlC family protein [Methanoculleus marisnigri JR1]
 gi|125861180|gb|ABN56369.1| translation factor SUA5 [Methanoculleus marisnigri JR1]
          Length = 191

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 13/198 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A   L     +  PTETVYGL  D+ +  A+ R+YE K RP   P+   VSD+ M
Sbjct: 2   DPIDMAVRVLSRDGLVVYPTETVYGLGADALSEDAVMRVYEAKNRPLGKPISIAVSDMEM 61

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +   A VD  +    + F PGP+T++L   + + +  + T        R P       +I
Sbjct: 62  LAAVAVVDDAARAFIERFLPGPVTVLLP--AKSCLPAVLTGGTGLIGVRWPDHEIAAAII 119

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                P+   SAN S  I  T    +           ++DGG    G  ST+V++     
Sbjct: 120 ARLDAPITSTSANISDDIPPTRPDEVSVP-----HDYLVDGGELP-GTPSTVVDL----P 169

Query: 189 VRILRPGGLEIETLKRAI 206
            R +   G   E ++  +
Sbjct: 170 ARRVLRKGAGWEAVEAFL 187


>gi|212716443|ref|ZP_03324571.1| hypothetical protein BIFCAT_01367 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660696|gb|EEB21271.1| hypothetical protein BIFCAT_01367 [Bifidobacterium catenulatum DSM
           16992]
          Length = 220

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 7/214 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +      +L +A E +  G  I IPT+TVYG+A D RN  AIR+++  K+RP    L
Sbjct: 1   MSEIRAISDESLAQAVEIVRDGGLIVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSL 60

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116
              +  I  ++K     P+ L  L+ +F PG   P+ +  D  +   +         T  
Sbjct: 61  QVLLPSIESLEKLHLDLPVPLNRLSAMFMPGAFSPIAVAGDNCTLATVRTDPATGKATQG 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     PLA  SANRSG  S   V   + +     + L +DGG +   +
Sbjct: 121 VRIPNSAAALRVLRTTGPLAATSANRSGDESAQTVDEAVQA-FGDAVDLYLDGGATPGHV 179

Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAISV 208
            ST+V  +      + ILR G +    +++A+++
Sbjct: 180 ASTVVAADPHGRDGIAILREGVIREPVIRKALTL 213


>gi|198276895|ref|ZP_03209426.1| hypothetical protein BACPLE_03100 [Bacteroides plebeius DSM 17135]
 gi|198270420|gb|EDY94690.1| hypothetical protein BACPLE_03100 [Bacteroides plebeius DSM 17135]
          Length = 188

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 8/190 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++KACE L  G  I  PT+TV+G+  D+ N  A++R++EIK+R     ++  V    
Sbjct: 3   KDEIKKACEVLQKGGVILYPTDTVWGIGCDATNEEAVKRVFEIKQRADSKAMLVLVDSPV 62

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            V  +    P ++  L ++    PLT++ D     ++ P   A   +   RV    F+K+
Sbjct: 63  KVDFYVQDVPSVAWDLIEMTT-KPLTIIYD--GARNLAPNLIAADGSVGIRVTSEEFSKQ 119

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184
           L   +   +   SAN SGQ +       ++  I + +  ++D    + G    S+IV + 
Sbjct: 120 LCFRFRKAIVSTSANISGQPAPAVFSE-ITEEIKQAVDYVVDYRREETGHPKPSSIVKLG 178

Query: 185 CEKKVRILRP 194
               V+I+R 
Sbjct: 179 KGGVVKIIRE 188


>gi|237735225|ref|ZP_04565706.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229380970|gb|EEO31061.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 201

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +S+ + NA+ +  + +     +A PTETV+GL V   +  A+  LYE+K R     +
Sbjct: 1   MNTVSV-EKNAIEEVAKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAI 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              +S    ++K+A VD  +  L   F PG +T++L       I    TA+L T   R+P
Sbjct: 60  SMMISKAEDIEKYAYVDETAKKLIAAFMPGMITIILKKRPH--IDDYFTASLDTIGIRIP 117

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              F   L++  G P+ + SAN SG+ S+ + K ++      +IPLI+ G  S     ST
Sbjct: 118 DDPFVLSLLDKTG-PMLVTSANLSGENSLVDDKAVMK-VFHGKIPLIVKGE-SISKKAST 174

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           IV++    KV ILR G +  E +   I
Sbjct: 175 IVDLSK-GKVEILRLGDISKEQIAEVI 200


>gi|94310010|ref|YP_583220.1| Sua5/YciO/YrdC/YwlC [Cupriavidus metallidurans CH34]
 gi|93353862|gb|ABF07951.1| putative translation factor (SUA5) [Cupriavidus metallidurans CH34]
          Length = 215

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A + +  G  IA+PT++ Y LA    +  A+ +L  +++    + L    SD+S
Sbjct: 14  ARLVKQAAQIVRQGGLIALPTDSSYALACQIDDKAAVEQLRRLREIDEKHHLTLMCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +   A VD       K   PGP   +L+         LS    KT   RVP       L
Sbjct: 74  ELGNFARVDNRQYRWIKGATPGPYVFILEATKEVP-RRLSHPARKTIGVRVPEHPIPLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G  +  N    + + + K + L+IDGG +     +T++++   +
Sbjct: 133 VAELGQPLISATLQLPGDDAPMNDPAEIRARLEKRLDLVIDGGPAPA-QPTTVIDLTSGE 191

Query: 188 KVRILRPGGLEIE 200
            V ++R G  ++E
Sbjct: 192 PV-LVRAGRGDVE 203


>gi|300114807|ref|YP_003761382.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus watsonii C-113]
 gi|299540744|gb|ADJ29061.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus watsonii C-113]
          Length = 209

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A  FL     I  PT++ Y L     N  A  R+ +++     +       D+S
Sbjct: 14  QRLLNQAASFLRQEGLIVYPTDSGYALGCQVGNKAAADRIRQLRGLGNRHEFSLVSRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   +  L K   PG  T +           L     +T   RVP    T+ L
Sbjct: 74  ELSLYAKVGNSAFRLLKALTPGAYTFIFKATREVP-RRLQDPKRRTIGIRVPANTVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + T G PL   +    G+         +   +  ++ LIIDGG       +T+V++  + 
Sbjct: 133 LTTLGEPLISSTLILPGEDIPLTDPEEIRDRMGGQVDLIIDGGYCGF-EPTTVVDLVEDM 191

Query: 188 KVRILRPG 195
             +++R G
Sbjct: 192 P-KVIREG 198


>gi|139473766|ref|YP_001128482.1| hypothetical protein SpyM50925 [Streptococcus pyogenes str.
           Manfredo]
 gi|134272013|emb|CAM30252.1| conserved hypothetical protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 196

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 5   ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 64

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 65  EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTGP 122

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR 
Sbjct: 123 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 179

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 180 GAITKEEL 187


>gi|161616428|ref|YP_001590393.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167554199|ref|ZP_02347940.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168245229|ref|ZP_02670161.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168264717|ref|ZP_02686690.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194449529|ref|YP_002047427.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197250333|ref|YP_002148323.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198243534|ref|YP_002217366.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|224585197|ref|YP_002638996.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913883|ref|ZP_04657720.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|212288230|sp|A9N8A7|RIMN_SALPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288266|sp|Q57J68|RIMN_SALCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|161365792|gb|ABX69560.1| hypothetical protein SPAB_04243 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407833|gb|ACF68052.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197214036|gb|ACH51433.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197938050|gb|ACH75383.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205321544|gb|EDZ09383.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205336011|gb|EDZ22775.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205346875|gb|EDZ33506.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|224469725|gb|ACN47555.1| hypothetical protein SPC_3471 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322615057|gb|EFY11981.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617344|gb|EFY14245.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625566|gb|EFY22391.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626408|gb|EFY23217.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632080|gb|EFY28833.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635041|gb|EFY31764.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643258|gb|EFY39825.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646658|gb|EFY43165.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650004|gb|EFY46423.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652721|gb|EFY49061.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659522|gb|EFY55766.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665536|gb|EFY61723.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670430|gb|EFY66569.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670503|gb|EFY66637.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675079|gb|EFY71162.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681616|gb|EFY77645.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685960|gb|EFY81949.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195830|gb|EFZ81003.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196414|gb|EFZ81565.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202699|gb|EFZ87738.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207304|gb|EFZ92254.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211260|gb|EFZ96105.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216031|gb|EGA00762.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223478|gb|EGA07806.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226792|gb|EGA10982.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231846|gb|EGA15956.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233201|gb|EGA17296.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237268|gb|EGA21333.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245503|gb|EGA29502.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249009|gb|EGA32931.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323250632|gb|EGA34513.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256860|gb|EGA40574.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323263010|gb|EGA46557.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266010|gb|EGA49505.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323272767|gb|EGA56170.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|326625147|gb|EGE31492.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 190

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|56460847|ref|YP_156128.1| Sua5 family translation factor [Idiomarina loihiensis L2TR]
 gi|56179857|gb|AAV82579.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family [Idiomarina
           loihiensis L2TR]
          Length = 207

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++++ + +     +  PT++ Y +     N  A  R+ +I++    +       D+S
Sbjct: 14  ARLIQQSVQIIRKSGVVVYPTDSGYAIGCQIGNKAAADRICQIREIDKEHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PGP T +L          L     KT   RVP       L
Sbjct: 74  ELATYARVDNDAFRLLKNNTPGPYTFILKGTKEVP-KRLLNPKRKTIGIRVPTNRIAMAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S      +   +    +   + K + LIIDGG  K    +T+V++  E 
Sbjct: 133 LEELNEPLMSTSLILGQGMLAESDPEEIRDKLEKLVDLIIDGGH-KGEEPTTVVDL-SEG 190

Query: 188 KVRILRPGGLEIE 200
              I R G  ++E
Sbjct: 191 APTIRREGSGDVE 203


>gi|331007630|ref|ZP_08330772.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC1989]
 gi|330418570|gb|EGG93094.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC1989]
          Length = 189

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 5/183 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A   +  G  IA PTE V+GL     N  A+ R+  +K+R     LI   S I+  
Sbjct: 9   SILIAARIMRQGGVIAYPTEAVWGLGCLPDNKDAVHRILSLKQRHVSKGLILVASSIAQF 68

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128
           + +   +        +  WPGP T ++   +T  +    +    +   RV      + L 
Sbjct: 69  EPYLRHITVEQRKTLENSWPGPFTWLVPHHNT--VPSWVSGKHSSIALRVSNHPHVRYLC 126

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSS-ICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              G P+   SAN  G+ +      +        E+  I+ G + +    STI ++    
Sbjct: 127 NAVGGPIVSTSANPQGKPAPKQTWQVKRYFKHQPELDWIVSGCVGQRAEPSTITDLVTGV 186

Query: 188 KVR 190
            +R
Sbjct: 187 VIR 189


>gi|332534849|ref|ZP_08410672.1| YciO family protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035709|gb|EGI72197.1| YciO family protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 206

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + +  G  +  PT++ Y +  +  N  A  R+  I+     +       D+S
Sbjct: 14  PRLISQAVDIIKQGGVVVYPTDSGYAIGCNIGNKQAKERIERIRGIEKNDNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
            +  +A VD     L K   PGP T +           L     KT   RV        L
Sbjct: 74  ELSTYARVDNQLFRLIKNNTPGPYTFIFKGTKEVP-KRLLNDKKKTIGMRVIEHPIACAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    GQ    +    +   + K + LII GG       +T++++  E 
Sbjct: 133 LAELGEPLMSCSLILPGQQFTESDPDEILERLDKHVDLIIHGGHLAE-QATTVIDL-SED 190

Query: 188 KVRILRPGGLEIETLK 203
           +V+ILR G  +    +
Sbjct: 191 EVKILRVGCGDTSPFE 206


>gi|119025466|ref|YP_909311.1| Sua5/YciO/YrdC family protein [Bifidobacterium adolescentis ATCC
           15703]
 gi|154486893|ref|ZP_02028300.1| hypothetical protein BIFADO_00726 [Bifidobacterium adolescentis
           L2-32]
 gi|118765050|dbj|BAF39229.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084756|gb|EDN83801.1| hypothetical protein BIFADO_00726 [Bifidobacterium adolescentis
           L2-32]
          Length = 220

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 7/214 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L +A E +  G  + IPT+TVYG+A D RN  AIR+++  K+RP    L
Sbjct: 1   MSEICTVNDESLARAVEIIHDGGLVVIPTDTVYGVACDPRNIEAIRKVFAAKQRPKYKSL 60

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTAC 116
              +  I  ++K     P+ L  LA +F PG   P+    D  S   +    T    T  
Sbjct: 61  QVLLPSIESMEKLHLTLPVPLNRLAAMFMPGAFSPIAEAEDDCSLATLRHDPTTGKATQG 120

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       I     PLA  SANRSG+ S   V+   + ++   + L +DGG +   +
Sbjct: 121 VRIPNSAVALRILRATGPLAATSANRSGEESAQTVQEA-ADALGDAVDLYLDGGATPGHV 179

Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAISV 208
            ST+V  +      + ILR G +    +++A+++
Sbjct: 180 SSTVVAADPHERDGIAILREGVIRELVIRKALTL 213


>gi|168468041|ref|ZP_02701878.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823240|ref|ZP_02835240.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|195628882|gb|EDX48292.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205340492|gb|EDZ27256.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087848|emb|CBY97611.1| putative ribosome maturation factor rimN [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 190

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|195029409|ref|XP_001987565.1| GH19895 [Drosophila grimshawi]
 gi|193903565|gb|EDW02432.1| GH19895 [Drosophila grimshawi]
          Length = 250

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 9/207 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++   NAL+ A + L  G  IA+PT+TVYGLA D+ N  AI+RLYEIK R A  P+  
Sbjct: 31  VYAVDALNALKLAEQCLQLGKVIALPTDTVYGLACDANNEEAIQRLYEIKGRDAHKPVAI 90

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V+ I  ++++     LS  L     PGPLT+V++         L+ +  +    R+P  
Sbjct: 91  CVNTIGALRRYGQASHLSDELLTRLLPGPLTIVIERTPQLSNRFLNPSTTR-IGIRIPDF 149

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L  T+   PLA+ SANRS   S  ++      ++  ++  + D G      +  L
Sbjct: 150 KFMRDLCGTWHEQPLALTSANRSSAPSSLHISE--FQALWPQLGAVFDAGRIGLSEERRL 207

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            ST++++       I+R G    +TL 
Sbjct: 208 ASTVIDLVTPGCYDIVRSGVALKQTLA 234


>gi|254302246|ref|ZP_04969604.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322438|gb|EDK87688.1| possible translation factor Sua5 [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 217

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V  
Sbjct: 25  IKKGSLIIYPTDTVYGLGAIVTNEQSINNVYLAKSRSFTSPLIALLSSVDKVEEVAYVSD 84

Query: 79  ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
               L   LAK FWPG LT++L       I  +  +   T   R+P      K+I+  G 
Sbjct: 85  KNKELLDKLAKAFWPGALTVILKRKEH--IPSIMVSGGDTIGVRIPNLDLAIKIIDLAGG 142

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR
Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGECKLGEASTIIDLTSDVP-KILR 200

Query: 194 PGG 196
            G 
Sbjct: 201 KGA 203


>gi|241662683|ref|YP_002981043.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D]
 gi|240864710|gb|ACS62371.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12D]
          Length = 207

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E + +G  +A+PT++ Y LA    + +A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAVEIIRSGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD     + K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G     N    +   + K++ L+IDGG +     +
Sbjct: 124 PEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPG 195
           T++++   +   ++R G
Sbjct: 183 TVIDLTGGEP-ELVRQG 198


>gi|117927851|ref|YP_872402.1| translation factor SUA5 [Acidothermus cellulolyticus 11B]
 gi|117648314|gb|ABK52416.1| translation factor SUA5 [Acidothermus cellulolyticus 11B]
          Length = 219

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 9/210 (4%)

Query: 2   QIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q+   +D       L+ A + +  G  + +PT+TVYG+  D+  P A+  L   K R   
Sbjct: 4   QVFDCSDPGQRTAGLQAAADAVRRGQLVVLPTDTVYGIGADAFTPAAVAALLAAKGRGRD 63

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P+   V    +     A+  P +  L   FWPG LT+V+    +       T    T  
Sbjct: 64  MPVPVLVGSRPVFDALVAAAPPTAYALIDAFWPGGLTIVVRYNPSLAWDLGETNG--TVA 121

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       +     P+A+ SANRSG    T   +   + + + + + +DGG +   +
Sbjct: 122 LRMPAEDLALELLQRTGPMAVSSANRSGLPPATTCANA-RAQLGEAVAVYLDGGPTTSTI 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            S+IV++  E    +LR G +E E L+  +
Sbjct: 181 PSSIVDLTGETP-TLLRSGAIEAERLREVV 209


>gi|212288265|sp|A9MN84|RIMN_SALAR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 190

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +    +
Sbjct: 9   SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLELKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTTAQRKAVFDCWPGPVTFVFPASATT--PRWLTGRFDSLAVRVTDHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P++ +G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFPMV-EGATGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|195486789|ref|XP_002091655.1| GE13782 [Drosophila yakuba]
 gi|194177756|gb|EDW91367.1| GE13782 [Drosophila yakuba]
          Length = 251

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 9/199 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  + D  AL+ A + L +G  IA+PT+TVYGLA D+ N TAI+RLYEIK R    P+  
Sbjct: 35  VCPVGDEAALQLARQCLLSGQVIALPTDTVYGLACDANNETAIQRLYEIKGRDEHKPVAI 94

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V +I+ +++      LS  L     PGPLT+V++  +      L+ +  K    R+P  
Sbjct: 95  CVHNIAALRRFGQAAHLSDELLTRLLPGPLTIVIERTAQLSNRFLNPSTSK-IGIRIPDF 153

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L   +   PLA+ SANRS   S   V  +   S+  ++  + D G      +  L
Sbjct: 154 NFIRDLCAVWHEQPLALTSANRSSAPSSLQV--VEFRSLWPQLGAVFDAGQIGLTEERRL 211

Query: 177 ESTIVNVQCEKKVRILRPG 195
            ST++++       I+R G
Sbjct: 212 ASTVIDLATPSYFEIVRAG 230


>gi|329942862|ref|ZP_08291641.1| yrdC domain protein [Chlamydophila psittaci Cal10]
 gi|332287455|ref|YP_004422356.1| putative Sua5/YciO/yrdC family protein [Chlamydophila psittaci 6BC]
 gi|325507262|gb|ADZ18900.1| putative Sua5/YciO/yrdC family protein [Chlamydophila psittaci 6BC]
 gi|328815122|gb|EGF85111.1| yrdC domain protein [Chlamydophila psittaci Cal10]
 gi|328914703|gb|AEB55536.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydophila psittaci 6BC]
          Length = 288

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 17/215 (7%)

Query: 4   MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           MS+TD +  LR+A ++LD G  IA PT+TVYGL V    P A  ++Y++K R     L+ 
Sbjct: 1   MSVTDPDFFLRQAADYLDQGKVIAFPTDTVYGLGVALNYPNAEEKIYDLKHRDQGKSLVV 60

Query: 63  HVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV- 119
           +V+ I  ++K    ++   +L L++ F PGPLTL++D       H     + +   FR+ 
Sbjct: 61  YVNTIEDIEKFSGCTLSTHALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRIL 113

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 KLI+  G PL   SAN S        K +L     ++I   +  G    GLEST
Sbjct: 114 SIPIVNKLIDLAG-PLLGTSANISNFPPAITSKEVLEDFCQEDI--CVIPGCCSYGLEST 170

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
           ++       ++I R G +  + ++  +  +++ C+
Sbjct: 171 VI---SADPLKIYREGMIPHQVIEDVVGEKIDACL 202


>gi|260592176|ref|ZP_05857634.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella veroralis F0319]
 gi|260535810|gb|EEX18427.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella veroralis F0319]
          Length = 189

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +   + ++KA E +  G  I  PT+TV+G+  D+ N  A+ ++Y +K+R     LIC V 
Sbjct: 1   MNQEDDIKKAIEVMKQGGIILYPTDTVWGIGCDATNAEAVAKVYSLKRRDDSKALICLVD 60

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + ++++   +  ++  L       P TL+LD     ++ P   A   +   R+    F
Sbjct: 61  SDNRLQRYVHNIPDVAWQLIDAV-EKPTTLILD--GAVNLAPNLIAEDGSIGIRITKEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           + +L   +   +   SAN SG+ +  N   I    +   +  +             S+I+
Sbjct: 118 SHELCYRFQKAIVSTSANISGEPAAQNYCDISQEILDG-VDYVCQSRRQGHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +  + +V+I+R
Sbjct: 177 KLSVDGEVKIIR 188


>gi|260495584|ref|ZP_05815709.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260196926|gb|EEW94448.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 217

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+TVYGL     N  +I  +Y  K R   +PLI  +S +  V++ A V  
Sbjct: 25  IKKGSLIIYPTDTVYGLGAVITNEQSINNVYLAKSRSFSSPLIALLSSVDKVEEVAYVSD 84

Query: 79  ----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
               L   LAK FWPG LT++L       I  +  +   T   R+P      K+I+  G 
Sbjct: 85  KNKNLLKKLAKAFWPGALTVILKRKE--YIPSIMVSGGDTIGVRIPNLDLAIKIIDLAGG 142

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            LA  SAN SG+ +  +    LS +I  ++ ++ID G  K+G  STI+++  +   +ILR
Sbjct: 143 ILATTSANISGEATPKSYDE-LSEAIKSKVDILIDSGKCKLGEASTIIDLTSDVP-KILR 200

Query: 194 PGG 196
            G 
Sbjct: 201 KGA 203


>gi|317124934|ref|YP_004099046.1| translation factor SUA5 [Intrasporangium calvum DSM 43043]
 gi|315589022|gb|ADU48319.1| translation factor SUA5 [Intrasporangium calvum DSM 43043]
          Length = 207

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 4/194 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + L  G  IA PT++ + L     NP    R+  I+     +      +D + + 
Sbjct: 17  IAQAVQILRDGGLIAYPTDSGFALGCSLDNPDGRSRILRIRGLDDRHHFTLVCADFAQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + A +D       K   PGP T ++          L     +T   R+P     + L++ 
Sbjct: 77  QFAQLDNTVFRAVKSHTPGPYTFIVPATKQVP-RRLLHPKKRTVGVRIPDHPVVRALLQA 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G P+   +    G          +   +   +  +ID G    GLE T V    +    
Sbjct: 136 HGEPILSSTLLMPGDEEPMTDGWAIKERLDHVVDAVIDSGEC--GLEPTTVVDFSDGYAE 193

Query: 191 ILRPGGLEIETLKR 204
           ++R G  +    + 
Sbjct: 194 LIRVGAGDPSDFEA 207


>gi|200386898|ref|ZP_03213510.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603996|gb|EDZ02541.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 190

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGVTGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|114562608|ref|YP_750121.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella frigidimarina NCIMB
           400]
 gi|114333901|gb|ABI71283.1| translation factor SUA5 [Shewanella frigidimarina NCIMB 400]
          Length = 206

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 75/207 (36%), Gaps = 8/207 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I D N     + +A   L  G  I  PT++ Y L        A+ R+  I++    
Sbjct: 3   QFFYIHDENPQARLINQAVAILKQGGVIVYPTDSGYALGCMIGEKNAMTRMARIRQIEND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
                   D+S +   A VD  +  L K   PGP T +           L     +T   
Sbjct: 63  TNFSLMCRDLSELANFARVDNQAYRLLKSCMPGPYTFIFKATKEVP-RRLQCDKKRTIGI 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+E  G P+   S     +    +    +   +   +  II GG      
Sbjct: 122 RVPNNIIALALLEALGEPMMTTSLVMPNEQFAESDPEHIRDILDHLVDGIIHGGYLPENQ 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            +T++++  ++ V ILR G  +    +
Sbjct: 182 -TTVIDMSEDEMV-ILRHGAGDTSAFE 206


>gi|238754969|ref|ZP_04616318.1| hypothetical protein yruck0001_15210 [Yersinia ruckeri ATCC 29473]
 gi|238706828|gb|EEP99196.1| hypothetical protein yruck0001_15210 [Yersinia ruckeri ATCC 29473]
          Length = 186

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 4/180 (2%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L  G  I  PT++ Y L        A+ R+  I++    +       D+S +  +A V
Sbjct: 2   DVLRKGGVIVYPTDSGYALGCRLEEKAAMERICRIRQLDGNHNFTLVCRDLSELSTYAHV 61

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135
           D  +  L K   PG  T +L          L     KT   RVP       L++  G PL
Sbjct: 62  DNSAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALALLDVLGEPL 120

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
              +    G     +    +   + K++ L+I GG S     +T++++  E    ++R G
Sbjct: 121 MSTTLMLPGNDFAESDPEEIRDHLGKQVDLVIHGG-SLGQQPTTVIDLT-ESSPEVIREG 178


>gi|94988612|ref|YP_596713.1| sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS9429]
 gi|94992436|ref|YP_600535.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS2096]
 gi|94542120|gb|ABF32169.1| sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS9429]
 gi|94545944|gb|ABF35991.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS2096]
          Length = 206

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 15  ASIIESGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILVFSK 74

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 75  EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITTALIQKTGP 132

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR 
Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 189

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 190 GAITKEEL 197


>gi|16766691|ref|NP_462306.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167995177|ref|ZP_02576267.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|81521479|sp|Q8ZLN0|RIMN_SALTY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|16421958|gb|AAL22265.1| putative translation factor [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205327095|gb|EDZ13859.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248559|emb|CBG26397.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995611|gb|ACY90496.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159945|emb|CBW19464.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914425|dbj|BAJ38399.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226454|gb|EFX51504.1| YrdC subfamily, required for N6-threonylcarbamoyl adenosine t(6)A37
           modification in tRNA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323131760|gb|ADX19190.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990254|gb|AEF09237.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 190

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|297250433|ref|ZP_06864286.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria polysaccharea ATCC
           43768]
 gi|296838895|gb|EFH22833.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria polysaccharea ATCC
           43768]
          Length = 239

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 47  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDQKHHLTLVCADLS 106

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 107 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 165

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 166 LGELGEPLLSCTLMLPEDGEPLTDPYEIRDRLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 224

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 225 EL--VRQGC 231


>gi|156933738|ref|YP_001437654.1| hypothetical protein ESA_01564 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531992|gb|ABU76818.1| hypothetical protein ESA_01564 [Cronobacter sakazakii ATCC BAA-894]
          Length = 183

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 4/178 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT++ Y L     +  A+ R+  I+  P  +       D+S +  ++ VD 
Sbjct: 1   MRKGGVIVYPTDSGYALGCKLEDKGAMERICRIRDLPDGHNFTLMCRDLSELSTYSYVDN 60

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
           ++  L K   PG  T +L          L     KT   RVP       L+E    P+  
Sbjct: 61  VAFRLIKNNTPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALALLEALDEPMLS 119

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            S    G     +    +   + K++ LII GG       +T++++  +  V +LR G
Sbjct: 120 TSLMLPGSEFTESDPDEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTDDAPV-VLREG 175


>gi|300770029|ref|ZP_07079908.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762505|gb|EFK59322.1| Sua5/YciO/YrdC/YwlC family protein [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 191

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 6/193 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+  D   + KA E L  G  I  PT+T++G+  D+ NP A+ R+ ++K R     +I  
Sbjct: 1   MTPIDREDINKALETLKNGGLILYPTDTIWGIGCDATNPEAVDRIIQLKGRSKEKSMIVL 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           + + + +  + +  P   +    +   PLT+V       ++   + A   +   R+    
Sbjct: 61  LHNENQLAGYVNDIPEVAYQLIEYTEHPLTIVYSNAK--NLAANAIAEDGSIGIRIVNHP 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTI 180
           F  +L++ +  P+   SAN SG+ S       +   I   +   +  G      G  STI
Sbjct: 119 FCTQLLQRFRKPIISTSANISGEPSAKTFGD-IDQKIKDGVDYTVQFGQKDRGAGKASTI 177

Query: 181 VNVQCEKKVRILR 193
           + +    K   +R
Sbjct: 178 MKLDPSGKFEFIR 190


>gi|167755050|ref|ZP_02427177.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402]
 gi|167705100|gb|EDS19679.1| hypothetical protein CLORAM_00554 [Clostridium ramosum DSM 1402]
          Length = 201

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 8/207 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +S+ + NA+ +  + +     +A PTETV+GL V   +  A+  LYE+K R     +
Sbjct: 1   MNTVSV-EKNAIEEVAKLVSDSRVVAFPTETVFGLGVKFGSHQALDALYELKHRDKGKAI 59

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              +S    ++K+A VD  +  L   F PG +T++L       I    TA+L T   R+P
Sbjct: 60  SMMISKAEDIEKYAYVDETAKKLIAAFMPGMITIILKKRPH--IDDYFTASLDTIGIRIP 117

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              F   L++  G P+ + SAN SG+ S+ + K ++      +IPLI+ G  S     ST
Sbjct: 118 DDPFVLSLLDKTG-PMLVTSANLSGENSLVDDKAVMK-VFHGKIPLIVKGE-SISKEAST 174

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           IV++    KV ILR G +  E +   I
Sbjct: 175 IVDLSK-GKVEILRLGDISKEQIAEVI 200


>gi|197263827|ref|ZP_03163901.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205354969|ref|YP_002228770.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858644|ref|YP_002245295.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|197242082|gb|EDY24702.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205274750|emb|CAR39807.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710447|emb|CAR34805.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326630118|gb|EGE36461.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 190

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      ++ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTIEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|227538481|ref|ZP_03968530.1| possible translation factor, Sua5 [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241667|gb|EEI91682.1| possible translation factor, Sua5 [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 191

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 6/193 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+  D   + KA E L  G  I  PT+T++G+  D+ NP A+ R+ ++K R     +I  
Sbjct: 1   MTPIDREDINKALETLKNGGLILYPTDTIWGIGCDATNPEAVDRVIQLKGRSKEKSMIVL 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           + + + +  + +  P   +    +   PLT+V       ++   + A   +   R+    
Sbjct: 61  LHNENQLAGYVNDIPEVAYQLIEYTEHPLTIVYSNAK--NLAANAIAEDGSIGIRIVNHP 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTI 180
           F  +L++ +  P+   SAN SG+ S       +   I   +   +  G   I  G  STI
Sbjct: 119 FCTQLLQRFRKPIISTSANISGEPSAKTFGD-IDQKIKDGVDYTVQFGQKDIGAGKASTI 177

Query: 181 VNVQCEKKVRILR 193
           + +    K   +R
Sbjct: 178 MKLDPSGKFEFIR 190


>gi|78707274|ref|NP_001027444.1| CG33786 [Drosophila melanogaster]
 gi|17946164|gb|AAL49123.1| RE55868p [Drosophila melanogaster]
 gi|71911685|gb|AAF57437.2| CG33786 [Drosophila melanogaster]
 gi|220948934|gb|ACL87010.1| CG33786-PA [synthetic construct]
 gi|220957748|gb|ACL91417.1| CG33786-PA [synthetic construct]
 gi|228480314|gb|ACQ41870.1| MIP03842p [Drosophila melanogaster]
          Length = 248

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 9/199 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + ++ D  AL+ A + L  G  IA+PT+TVYGLA D+ N TAI++LYEIK R    P+  
Sbjct: 32  VCAVGDEAALQLARQCLLGGQVIALPTDTVYGLACDANNETAIQQLYEIKGRDEHKPVAI 91

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V +I  +++      LS  L     PGPLT+V++  S      L+ +  K    R+P  
Sbjct: 92  CVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIERTSQLSNRFLNPSTSK-IGIRIPDF 150

Query: 122 GFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
            F + L   +   PLA+ SANRS   S   V      S+  ++  + D G      +  L
Sbjct: 151 NFMRDLCAVWQEKPLALTSANRSSAPSSLQVSE--FRSLWPQLGAVFDAGRIGLTEERRL 208

Query: 177 ESTIVNVQCEKKVRILRPG 195
            ST++++       I+R G
Sbjct: 209 ASTVIDLATPGYYEIVRAG 227


>gi|304310659|ref|YP_003810257.1| Putative translation factor (SUA5) [gamma proteobacterium HdN1]
 gi|301796392|emb|CBL44600.1| Putative translation factor (SUA5) [gamma proteobacterium HdN1]
          Length = 211

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 8/206 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI  +   N     +++A   L  G  I  PT+  Y       N +A+ R+ +I++  + 
Sbjct: 3   QIFHVHSENPQKRLIQQAVNILRDGGVIVYPTDAAYAFGCTVGNKSALERIVQIRQLGSK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       ++S +  +A VD     L K   PGP T +L   +      L     KT   
Sbjct: 63  HNFTIACHNLSELATYARVDNQVFRLLKNNTPGPYTFILAATAEVP-RRLMHPKRKTVGL 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       L+E  G PL   +     +         +   + + I L+IDGG  +   
Sbjct: 122 RIPDNKIALALLEALGEPLMTTTLIMPNESEPLVDPEEILELLSRRIELVIDGGWGETST 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            +T+V++     V ++R G   +E +
Sbjct: 182 -TTVVDLVDSIPV-LVREGKGSLEKV 205


>gi|292900851|ref|YP_003540220.1| hypothetical protein EAM_3158 [Erwinia amylovora ATCC 49946]
 gi|291200699|emb|CBJ47832.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
          Length = 188

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++L +  E L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D   
Sbjct: 6   DSLAQCVEQLAQSKVIAYPTEAVFGLGCDPDSEEAVMRLLALKQRPVEKGLILIAADYQQ 65

Query: 70  VKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
           +    + + L +   A++F  WPGP+T VL   STT      T    T   RV       
Sbjct: 66  LMPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGRFTTLAVRVSDHPDVI 123

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L   +G PL   SAN SG     +   +L +   ++ P ++ G        S I +V  
Sbjct: 124 ALCNAFGKPLVSTSANLSGLPPCRHAAEVL-AQFGRDFP-VLKGETGGRLNPSEIRDVLS 181

Query: 186 EKKVR 190
            + +R
Sbjct: 182 GELIR 186


>gi|307546301|ref|YP_003898780.1| translation factor [Halomonas elongata DSM 2581]
 gi|307218325|emb|CBV43595.1| K07566 putative translation factor [Halomonas elongata DSM 2581]
          Length = 207

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 8/208 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I   N     + +A   +  G  IA PT++ Y L     +  AI R+  ++     
Sbjct: 3   QFFQIHPENPQKRLIDQAVRIIRDGGVIAYPTDSGYALGCHLGDKKAIERIKWLRSLDDK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +      SD+S +  +A VD     L K   PG  T +L   S      L     ++   
Sbjct: 63  HNFTLVCSDLSEIGTYAKVDNAVFRLLKAHTPGAYTFILQATSEVP-RLLLHPKRRSIGV 121

Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP     + L+   G PL   +    G+         +       + L+IDGG   +  
Sbjct: 122 RVPDHPIPRALLAELGEPLMSVTLIPVGEEQPMTEAEEIRERFGAHLDLVIDGGACHL-E 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204
            +++++++ E   +I+R G  +I   + 
Sbjct: 181 PTSVIDLR-ELPPQIVREGRGDIAPFQE 207


>gi|194442465|ref|YP_002042654.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194401128|gb|ACF61350.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 190

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L++   K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDTILTVAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|220909107|ref|YP_002484418.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7425]
 gi|219865718|gb|ACL46057.1| Sua5/YciO/YrdC/YwlC family protein [Cyanothece sp. PCC 7425]
          Length = 221

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 12/214 (5%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I SI   N       +  + L AG  +  PT+TVY +  D     A++R+ +IK     
Sbjct: 3   KIYSIHPDNPQQRITDQIRDELRAGAVMLYPTDTVYAIGCDLNVKHAVQRVRQIKHLSND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTAC 116
            PL    S +S +  +A V   +  L +   PGP T +L   +T  +  L+     KT  
Sbjct: 63  KPLTFLCSSLSNIAHYAYVSDSAYRLMRSLVPGPYTFLLP--ATKLVPRLAQEPKRKTTG 120

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISI----TNVKHILSSSICKEIPLIIDGGI 171
            RVP     + L+E+ G P+   +A    +             L     + + LI+D G 
Sbjct: 121 IRVPDHPVCQSLLESLGSPVISTAARLPEEEQTNESVELGSAELFDRFDRLVDLIVDNGQ 180

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205
                 STI+++     V + +  G E   L++ 
Sbjct: 181 KTGQQVSTILDLGATPPVIVRKGLGWEALPLEKF 214


>gi|157959867|ref|YP_001499901.1| SUA5/yciO/yrdC domain-containing protein [Shewanella pealeana ATCC
           700345]
 gi|212288224|sp|A8GYH9|RIMN_SHEPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|157844867|gb|ABV85366.1| SUA5/yciO/yrdC domain [Shewanella pealeana ATCC 700345]
          Length = 187

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 7/181 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E ++ G  IA PTE VYGL  D  N  AI +L +IK+RP    LI    D   +  + 
Sbjct: 9   AAELVEQGGVIAYPTEAVYGLGCDPDNDEAINQLLQIKQRPWQKGLILVAGDYQQLLPYI 68

Query: 75  SVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
               L+      A+  WPGP T ++ +     +  L +    +   RV      K L   
Sbjct: 69  DESQLNAQQLAFAQSKWPGPFTFIMPVKPG--LSKLLSGAFDSIAVRVTAHAGVKALCAA 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SGQ    +    +       I  ++ G +      STI++ +    +R
Sbjct: 127 IHKPIVSTSANLSGQEPALS-PLAVKQQFEGIISGLVVGELGSQASPSTIIDARSGTVIR 185

Query: 191 I 191
            
Sbjct: 186 E 186


>gi|30249687|ref|NP_841757.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas europaea ATCC
           19718]
 gi|30180724|emb|CAD85636.1| SUA5/yciO/yrdC family:Sua5/YciO/YrdC/YwlC protein family
           [Nitrosomonas europaea ATCC 19718]
          Length = 210

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +R+A + +  G  IA PT++ Y L     N  A+ R+  I+K    +       D++
Sbjct: 14  TRLIRQAVDIVRKGGVIAYPTDSCYALGCQIGNKEAMDRIRTIRKVDQNHNFTLVCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +L          L      T   R+P     + L
Sbjct: 74  EIATYAKVDNAQYRLLKAATPGSYTFILAATREVP-RRLQHPKRHTIGLRIPDHPVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G     N    +   +  +I L++D G     + +T++++  E 
Sbjct: 133 LAELDEPLLSSTLILPGDELPLNDAGEIRQRLEHQIELVMDAGSCGTDM-TTVIDLT-ET 190

Query: 188 KVRILRPGGLEI 199
             ++ R G  ++
Sbjct: 191 TPKVARSGKGDL 202


>gi|89074055|ref|ZP_01160556.1| putative translation factor [Photobacterium sp. SKA34]
 gi|89050193|gb|EAR55704.1| putative translation factor [Photobacterium sp. SKA34]
          Length = 206

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  TRLIKQAVEIIKNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  VD ++  L +   PG  T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYTRVDNIAFRLLRNNTPGAYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G  +       +   +   + LI+ GG       +T+++   + 
Sbjct: 133 LEALGEPLMSTSLILPGNETTEADPDDIRDKLEHAVDLIMHGGYLGE-QPTTVIDF-SDG 190

Query: 188 KVRILRPGGLEIETLK 203
           ++ I+R G  ++   +
Sbjct: 191 EINIVRVGAGDVTPFE 206


>gi|90581221|ref|ZP_01237019.1| putative translation factor [Vibrio angustum S14]
 gi|90437592|gb|EAS62785.1| putative translation factor [Vibrio angustum S14]
          Length = 206

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A E +  G  +  PT++ Y L     N  A+ R+ +I++    +       D+S
Sbjct: 14  TRLIKQAVEIIKNGGVVVYPTDSGYALGCQLENKQALERICQIRRLNEKHNFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  VD ++  L +   PG  T +           L  A  KT   RVP       L
Sbjct: 74  ELSLYTRVDNIAFRLLRNNTPGAYTFIFKGTKEVP-RRLMNAKRKTIGIRVPDNAIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S    G  +       +   +   + LI+ GG       +T+++   E 
Sbjct: 133 LEALGEPLMSTSLILPGNETTEADPDEIRDKLEHAVDLIMHGGYLGE-QPTTVIDF-SEG 190

Query: 188 KVRILRPGGLEIETLK 203
           ++ I+R G  ++   +
Sbjct: 191 EINIVRVGAGDVTPFE 206


>gi|312137347|ref|YP_004004684.1| translation factor sua5 [Methanothermus fervidus DSM 2088]
 gi|311225066|gb|ADP77922.1| translation factor SUA5 [Methanothermus fervidus DSM 2088]
          Length = 196

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 13/199 (6%)

Query: 1   MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+I+ +      +  L K    L  G  I  PT+T+YGL  ++ +  AI+++Y IKKR  
Sbjct: 1   MKIIKLDPYNPKTKVLNKVRRMLAEGKVIIYPTDTLYGLGANAFDEDAIKKVYSIKKRSF 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P+   V ++  ++K A ++           PGP T++L+      I  + TA  K   
Sbjct: 61  DKPISICVPNMRWIRKVAYLNDKQKEKISKLLPGPYTIILE--KKDIIPDVLTAGKKKVG 118

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P    + +L + +  P+   SAN SG+ +   VK I+     K + L ID G  + G
Sbjct: 119 IRIPKSKISIELAKEF--PITATSANISGRETPPTVKEIIKQL--KNVDLAIDVGPLR-G 173

Query: 176 LESTIVNVQCEKKVRILRP 194
             ST+++   +   +I+R 
Sbjct: 174 EPSTVIDFTTD-PPKIIRG 191


>gi|326774096|ref|ZP_08233378.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505]
 gi|326636235|gb|EGE37139.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505]
          Length = 253

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 100/233 (42%), Gaps = 26/233 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + L+ AC+ L AG  + +PT+TVYG+  ++ +  A+ RL   K R    P    V+D +
Sbjct: 16  PDPLQPACDHLRAGGLVILPTDTVYGIGCNAADAAAVERLLAAKGRGRQMPPPVLVADPA 75

Query: 69  MV-KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +    A V   +  L + FWPG LTL+L+   T       T    T   R+P    T  
Sbjct: 76  DLIGLVAQVPEAAHALMEAFWPGALTLILEADETLTWDLGETGG--TLAVRMPAHELTLN 133

Query: 127 LIETYGHPLAIPSANRSGQISI-------------------TNVKHILSSSICKEIPLII 167
           L+   G PLA+ SAN +G                              + +  +E  L++
Sbjct: 134 LLRRSG-PLAVTSANPTGAPPATDAASARAAFPGRVRSVDELTADGEAAGADWREDILLL 192

Query: 168 DGGISKIGLESTIVNVQCE--KKVRILRPGGLEIETLKRAISVELEYCVDETS 218
           DGG +   + STIV +  E  +  RILR G L +  L+R   V L       +
Sbjct: 193 DGGATPGPVPSTIVTLAGEHARAPRILRQGVLALADLERVAGVALSERTAGAA 245


>gi|114332006|ref|YP_748228.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91]
 gi|114309020|gb|ABI60263.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas eutropha C91]
          Length = 210

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 4/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+A + +  G  I  PT++ Y L     N  A+ R+  I+K    +       D++ + 
Sbjct: 17  IRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVGQDHNFTLVCRDLAEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A VD     L K   PG  T +L          L      T   R+P    T+ L+  
Sbjct: 77  TYAKVDNAQYRLLKATTPGSYTFILTASREVP-RRLQHPKRHTIGLRIPEHPVTQALLAE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   +          N    +   +  ++ LI+D G     + +T++++  E   R
Sbjct: 136 LNEPLLSSTLILPEDELPLNDAEEIRQRLEHQVELIMDAGSCGTNM-TTVIDLT-EATPR 193

Query: 191 ILRPGGLEI 199
           I R G  ++
Sbjct: 194 IARLGKGDL 202


>gi|209522642|ref|ZP_03271200.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira maxima CS-328]
 gi|209496691|gb|EDZ96988.1| Sua5/YciO/YrdC/YwlC family protein [Arthrospira maxima CS-328]
          Length = 222

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 13/199 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L  G  +  PT+TVY +  D    +A++++ +IK+     PL    S +S + 
Sbjct: 17  IEQIKDALKRGAVMLYPTDTVYAIGCDLTVKSAVQKVRQIKQISNDKPLTFLCSSLSNIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
            +A V   +    K   PG  T VL   +T  +  L  +   KT   RVP       ++E
Sbjct: 77  DYAIVTDAAYRTIKRLIPGSYTFVLP--ATKLVPKLVMSPKRKTTGIRVPDHPVCLAILE 134

Query: 130 TYGHPLAIPSANRSGQISI---------TNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
           + G+P+   SA+   +               K  L  ++   + +I+D G       STI
Sbjct: 135 SLGNPVISTSAHIKEEDEPSALIKKIPQEYDKVQLFDALENLVDIIVDDGADWDYQVSTI 194

Query: 181 VNVQCEKKVRILRPGGLEI 199
           +++  +  V + R  G E 
Sbjct: 195 IDLSADDPVLVRRGKGWEA 213


>gi|187928076|ref|YP_001898563.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J]
 gi|187724966|gb|ACD26131.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia pickettii 12J]
          Length = 207

 Score =  160 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E + AG  +A+PT++ Y LA    + +A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKSAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD     + K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G     N    +   + K++ L+IDGG +     +
Sbjct: 124 PEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPG 195
           T++++   +   ++R G
Sbjct: 183 TVIDLTSGEP-ELVRQG 198


>gi|197334056|ref|YP_002157319.1| putative yrdC domain protein [Vibrio fischeri MJ11]
 gi|197315546|gb|ACH64993.1| putative yrdC domain protein [Vibrio fischeri MJ11]
          Length = 185

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L  G  IA PTE V+G+  D  N  A+  L ++KKRP    LI   + I  + 
Sbjct: 4   LNQVVDALKQGNVIAYPTEGVFGVGCDPDNEQALLNLLDVKKRPKEKGLILIAASIEQLL 63

Query: 72  KHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  ++ L+       K  WPGP+T ++ + ++T   PL T    +   RV      K +
Sbjct: 64  PYIDLEQLTEEQVNTIKASWPGPVTWIVPVKTSTL--PLVTGQFDSIAVRVTAHPQVKAI 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G P+   SAN SG     +V  +  + +     +I  G +      + I + +   
Sbjct: 122 CNAFGKPITSTSANLSGLEPCRSVAEV-EAQLGDTGVVIFQGEVGNRTQPTEIRDAKTGN 180

Query: 188 KVR 190
            +R
Sbjct: 181 TLR 183


>gi|238797207|ref|ZP_04640708.1| Ribosomal modification protein RimN [Yersinia mollaretii ATCC
           43969]
 gi|238718844|gb|EEQ10659.1| Ribosomal modification protein RimN [Yersinia mollaretii ATCC
           43969]
          Length = 188

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S+ L      L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++ 
Sbjct: 4   NSDVLADVLRALRQEEVIAYPTEAVFGLGCDPDSEKAVNALLTLKQRPWQKGLILIAANY 63

Query: 68  SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +     LS          WPG +T V+   + T+     T +  +   RV     
Sbjct: 64  EQLKPYVDDSSLSDSQRETIFSCWPGAVTWVIP--ARTETPRWLTGSFDSLAVRVSDHPL 121

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L   YG PL   SAN SG       + +        +P+++ G +      S I + 
Sbjct: 122 VQQLCLQYGKPLVSTSANLSGHEPCRTDEEV-RIQFGPSLPVLL-GKVGGRLNPSEIRDA 179

Query: 184 QCEKKVR 190
              K+ R
Sbjct: 180 LTGKQFR 186


>gi|94990488|ref|YP_598588.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS10270]
 gi|94543996|gb|ABF34044.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS10270]
          Length = 206

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              +++G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 15  ASIIESGDALVLPTETVYGLFAKALDEKAVNTVYDLKQRPRDKAMNLNVADFNSILAFSK 74

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 75  EQPRYLKKLYQAFLPGPLTIIL--KANDQVPYWINSGLSTVGFRLPSHPITTALIQKTGP 132

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E+ V ILR 
Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGERAV-ILRQ 189

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 190 GAITKEEL 197


>gi|291408762|ref|XP_002720685.1| PREDICTED: ischemia/reperfusion inducible protein [Oryctolagus
           cuniculus]
          Length = 280

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 68  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVA 127

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 128 DVYRYCHVR-VPEQLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGVRIPAHAFMQDL 184

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +G PLA+ SAN S Q S  NV+      +   + L+IDGG    G        ST+V
Sbjct: 185 AQMFGGPLALTSANLSSQASSLNVQE--FQDLWPHLSLVIDGGPIGEGQSPECRLGSTVV 242

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 243 DLSVPGKFGIIRPGC 257


>gi|157148857|ref|YP_001456176.1| putative ribosome maturation factor [Citrobacter koseri ATCC
           BAA-895]
 gi|157086062|gb|ABV15740.1| hypothetical protein CKO_04695 [Citrobacter koseri ATCC BAA-895]
          Length = 200

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 8/193 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ +   ++A+  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI
Sbjct: 10  KVNNNLPTDAIAAAVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLI 69

Query: 62  CHVSDISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
              ++   +K +                 WPGP+T V    +TT      T    +   R
Sbjct: 70  LIAANFEQLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATT--PRWLTGRFDSLAVR 127

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           V        L + YG PL   SAN +G      V+ +  +    + P +++G        
Sbjct: 128 VTDHPLVVSLCQAYGKPLVSTSANLTGLPPCRTVEEV-RAQFGADFP-VVEGETGGRLNP 185

Query: 178 STIVNVQCEKKVR 190
           S I +    +  R
Sbjct: 186 SEIRDALTGELFR 198


>gi|298530069|ref|ZP_07017471.1| SUA5/yciO/yrdC domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509443|gb|EFI33347.1| SUA5/yciO/yrdC domain protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 212

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 6/214 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M    S ++ +A + + +   +  PTET++G+     +   ++++ E+KKRP   P    
Sbjct: 1   MEFNMSGSIFQAVQIIKSEKILIYPTETLWGMGGTGTSKAVVQKIRELKKRPVHKPFPLI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCG 122
              +   +   ++DP SL LA  FWPGP++++   L    + P           RV P  
Sbjct: 61  AGTLEQARSFVAMDPESLELAGQFWPGPVSILCRALDM--LAPGVRDEQGMVSIRVTPHQ 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIV 181
              +L    G PL   SAN SG+ S    +  L S + +++ ++ + G     GL ST+V
Sbjct: 119 DAARLCLDAGTPLIATSANISGEKSCAVFEE-LDSELLRKVDMVFEHGHAPAGGLPSTLV 177

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215
            V    K+ ILR G +  + L+     E  Y  D
Sbjct: 178 RVFGGGKIEILREGRISRQDLESR-GWETVYKTD 210


>gi|318607705|emb|CBY29203.1| sua5 YciO YrdC YwlC family protein [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 195

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 8/192 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +    +  AL    + L     IA PTE V+GL  D  +  A+  L  +K+RP    LI 
Sbjct: 6   VSRNENRAALSDVLQALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLIL 65

Query: 63  HVSDISMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             ++   +K +     L+          WPGP+T V+     T      T +  +   RV
Sbjct: 66  IAANYEQLKPYVDDSALTDSQRETIFSVWPGPVTWVIPTHPET--PRWLTGSFDSLAVRV 123

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 ++L   YG PL   SAN SGQ      + +        +P ++ G +      S
Sbjct: 124 SDHPLVQQLCSQYGKPLVSTSANLSGQEPCRTTEEV-RIQFGSSLP-VLAGLVGGRLNPS 181

Query: 179 TIVNVQCEKKVR 190
            I +    K+ R
Sbjct: 182 EIRDALTGKQFR 193


>gi|159905153|ref|YP_001548815.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C6]
 gi|159886646|gb|ABX01583.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C6]
          Length = 206

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 14/213 (6%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+   I++SN       +  A + +  G  I   T+T+YGL+ ++ +  AI ++Y IK+R
Sbjct: 1   MKTFEISESNLKNCEKEIETAKKMILNGKVILCGTDTLYGLSTNALDKNAIEKIYSIKER 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
               P+   + +   ++ +  VD ++  + + F PGP+T++L      DI P        
Sbjct: 61  DPNKPISISLGEKKQIENYVYVDSIAKKIIEKFMPGPITVIL---KKKDIIPDILGKDD- 116

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              R+P     + I     PL   SAN SG+ + ++++ +  + I +++ LII+ G SK 
Sbjct: 117 VGVRIPDNDVIRKI--AIVPLTTTSANISGKTAPSSLEEV-DTVIKEKVDLIINTGPSKY 173

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            ++STIV V    K+ ++R G +  E + +A+ 
Sbjct: 174 KVQSTIVKVIG-GKIELIREGKIPFEEILKAVK 205


>gi|327284453|ref|XP_003226952.1| PREDICTED: hypothetical protein LOC100555097 [Anolis carolinensis]
          Length = 499

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
             G  +A+PT+TVYG+A  + +  A+  LY +K R    PL   + D+ ++ +   V  +
Sbjct: 91  RGGGLVALPTDTVYGVACLAEDSRALEALYRLKGRDPGKPLAVCLPDLDVLHRFCKV-QV 149

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
              L +   PGP+TLVL+      ++P           R+P   F ++L      PLA+ 
Sbjct: 150 PEGLLQDLLPGPVTLVLERSEA--LNPDLNPFTPLVGVRIPNHWFARELARICAAPLALT 207

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRIL 192
           SAN S + S  +V       +   + L++DGG        +  L ST+V++    K R++
Sbjct: 208 SANPSHKGSTLDVTE--FQELWPHLSLVVDGGPLGDTHSPESRLGSTVVDLSVPGKFRVI 265

Query: 193 RPGGLEIETL 202
           RPG    +TL
Sbjct: 266 RPGCALSQTL 275


>gi|325297458|ref|YP_004257375.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM
           18170]
 gi|324317011|gb|ADY34902.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides salanitronis DSM
           18170]
          Length = 187

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 8/190 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              ++ ACE ++ G  I  PT+TV+G+  D+ N  A++R+YEIK+R     ++  V    
Sbjct: 2   KEEIKNACEVMNKGGVILYPTDTVWGIGCDATNEEAVKRVYEIKRRADSKAMLVLVDSPV 61

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            V  +    P ++  L +     PLT++ D     ++ P   A   +   RV    F+K+
Sbjct: 62  KVDYYVQDVPSVAWDLIE-LTTKPLTIIYD--GARNLAPNLLAEDGSVGIRVTNEAFSKE 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184
           L   +   +   SAN SG+ S       +S  I   +  I+D    + G    S+I+ + 
Sbjct: 119 LCFRFRKAIVSTSANISGEPSPAVFSE-ISEEIKSAVDYIVDFRREETGHPKPSSIIKLG 177

Query: 185 CEKKVRILRP 194
              +V+I+R 
Sbjct: 178 KGGEVKIIRE 187


>gi|281419747|ref|ZP_06250746.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella copri DSM 18205]
 gi|281406276|gb|EFB36956.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella copri DSM 18205]
          Length = 190

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 8/193 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++ A E +  G  I  PT+TV+G+  D+ NP A++++YEIKKR     LIC + 
Sbjct: 1   MTVEEDIKHAVECMRKGGVILYPTDTVWGIGCDATNPEAVKKVYEIKKRDDSKALICLID 60

Query: 66  DIS-MVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
               M +   +V  ++        P  P T++LD    + +     A   +   R+    
Sbjct: 61  SADRMARYFRNVPQVAWDFIDAAMPVKPTTVILD--DASGVANNLVAEDGSLAMRITYEP 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTI 180
           F+K+L   +  P+   SAN SG+ +  N +  +S  I   +  +      +      S+I
Sbjct: 119 FSKQLCYRFQKPIVSTSANVSGEPAAQNYRD-ISEEILNAVDYVCWSRRQEHKPHQPSSI 177

Query: 181 VNVQCEKKVRILR 193
           V +  + +V+++R
Sbjct: 178 VKIAKDGEVKVIR 190


>gi|150403108|ref|YP_001330402.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C7]
 gi|150034138|gb|ABR66251.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus maripaludis C7]
          Length = 206

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 14/213 (6%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+   I++SN       +  A + +  G  I   T+T+YGL+ ++ +  AI ++Y IK+R
Sbjct: 1   MKTFEISESNLKNCNDEIESARKMILDGKIILCGTDTLYGLSTNALDKKAIEKIYSIKER 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
               P+   + +   ++ +  VD  +  + + F PGP+T++L      DI P        
Sbjct: 61  DPNKPISISLGEKDQIENYVYVDKPAKKIIEKFMPGPITVIL---KKKDIIPDILGKND- 116

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              R+P     + I     PL   SAN SG+ +  +++ +  S I +++ LIID G  K 
Sbjct: 117 VGVRIPDNDVIRKI--AIVPLTTTSANISGKTAPASLEEV-DSIIKEKVDLIIDTGPCKY 173

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            ++STIV V  + K+ ++R G +  E + R + 
Sbjct: 174 KVQSTIVKVI-DGKIELIREGKIPFEDILRTVK 205


>gi|29655286|ref|NP_820978.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493]
 gi|153206968|ref|ZP_01945786.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918271|ref|ZP_02218357.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334]
 gi|212219510|ref|YP_002306297.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154]
 gi|81628337|sp|Q83AA2|RIMN_COXBU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|29542558|gb|AAO91492.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493]
 gi|120577041|gb|EAX33665.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918131|gb|EDR36735.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334]
 gi|212013772|gb|ACJ21152.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154]
          Length = 186

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 5/185 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L  G  IA PTE VYGL  D  N  A+ +L  IKKR      I   S+  
Sbjct: 5   TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126
            V+     +DP +L      WPGP T      ++ +     T    T   RV      K 
Sbjct: 65  QVEPLTEPIDPKALARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLAKL 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L + +  PL   SAN+ G+  I +VK IL      +I  I++G +      + I +    
Sbjct: 123 LCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKILEGPLGPTHRPTPIRDAITG 181

Query: 187 KKVRI 191
           + +R+
Sbjct: 182 EILRL 186


>gi|319901221|ref|YP_004160949.1| translation factor SUA5 [Bacteroides helcogenes P 36-108]
 gi|319416252|gb|ADV43363.1| translation factor SUA5 [Bacteroides helcogenes P 36-108]
          Length = 204

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 10/198 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++    L+ G  I  PT+T+Y +   +    AI R+ ++K   P  N L   
Sbjct: 8   KNNNPADLQQIINLLNDGGIIIYPTDTMYAIGCHALKERAIERICQLKDIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S + ++A VD  +  L K   PG  T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKVDNNTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDSS 124

Query: 123 FTKKLIETYGHPLAIPSAN--RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             +++      P+   +     S  I       +++      + LIIDGGI   G E ST
Sbjct: 125 IIREIARLLDAPIMTTTLPYDDSEDIEYATDPELINEKFGNTVDLIIDGGIG--GTEGST 182

Query: 180 IVNVQCEKKVRILRPGGL 197
           IV+    +   + +  G 
Sbjct: 183 IVDCTNGETEIVRQGKGW 200


>gi|168239765|ref|ZP_02664823.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734742|ref|YP_002116346.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204931408|ref|ZP_03222077.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194710244|gb|ACF89465.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197287578|gb|EDY26970.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204319836|gb|EDZ05046.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 190

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIVAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|56415322|ref|YP_152397.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364252|ref|YP_002143889.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81360772|sp|Q5PIS8|RIMN_SALPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|56129579|gb|AAV79085.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095729|emb|CAR61299.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 190

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++    + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIAAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLKPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|256390409|ref|YP_003111973.1| Sua5/YciO/YrdC/YwlC family protein [Catenulispora acidiphila DSM
           44928]
 gi|256356635|gb|ACU70132.1| Sua5/YciO/YrdC/YwlC family protein [Catenulispora acidiphila DSM
           44928]
          Length = 216

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 10/208 (4%)

Query: 4   MSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
              TD       LR+A   +  G  + +PT+T+YG+  D+    A+R L E K R    P
Sbjct: 5   FDCTDPEQRKTGLREAASAVRRGELVVLPTDTLYGIGADAFTNWAVRALLEAKGRGPAMP 64

Query: 60  LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
               V   + +    + +  +   L   FWPG LT+V     T       T    T   R
Sbjct: 65  SPVLVPSPATLHGLVAGMPSVGWELVDAFWPGGLTIVAMHQPTLTWDLGET--RGTVAVR 122

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLE 177
           +P       + T   P+A+ SAN++G  +           +   + + +D G +   G  
Sbjct: 123 MPLHPVAIELLTETGPMAVSSANKTGMAAAQTAVDA-QDQLGDAVSVYLDAGKVGGEGGA 181

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205
           S+IV+V     V +LR G L  + L+  
Sbjct: 182 SSIVDVTGTAPV-LLREGALTFDQLREV 208


>gi|15676348|ref|NP_273484.1| hypothetical protein NMB0436 [Neisseria meningitidis MC58]
 gi|7225661|gb|AAF40874.1| conserved hypothetical protein [Neisseria meningitidis MC58]
          Length = 213

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 21  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 80

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 81  ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 140 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 198

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 199 EL--VRQGC 205


>gi|254491166|ref|ZP_05104347.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxidans
           DMS010]
 gi|224463679|gb|EEF79947.1| Sua5/YciO/YrdC/YwlC family protein [Methylophaga thiooxydans
           DMS010]
          Length = 188

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 6/181 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+A + L+ G  IA PTE VYG+  D  +  A+  L EIK+RP    LI   +D + ++
Sbjct: 12  LRQAVKTLNLGGTIAYPTEAVYGVGCDPWDEEAVLTLLEIKQRPWTKGLILIAADFNQLQ 71

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                V    L   +  WPGP+T +L   + +D+    T    T   RV     T++L E
Sbjct: 72  DFIEPVSAAMLEQLQQTWPGPVTWLLP--ARSDVPGYLTGMHDTIAVRVTAHPLTRQLCE 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G  +   SAN +G     NV H +   +   I  ++ G +      S I + Q  + +
Sbjct: 130 AFGGAIVSTSANITGLKPAMNV-HQVRWQL-PAIDYVLPGALGGADKPSQIRDGQTGETL 187

Query: 190 R 190
           R
Sbjct: 188 R 188


>gi|59713143|ref|YP_205919.1| ribosome maturation factor [Vibrio fischeri ES114]
 gi|75353187|sp|Q5E1R5|RIMN_VIBF1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|59481244|gb|AAW87031.1| predicted ribosome maturation factor [Vibrio fischeri ES114]
          Length = 185

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  + L  G  IA PTE V+G+  D  N  A+  L ++KKRP    LI   + I  + 
Sbjct: 4   LNQVVDALKQGNVIAYPTEGVFGVGCDPDNEQALLNLLDVKKRPKEKGLILIAASIEQLL 63

Query: 72  KHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  ++ L+       K  WPGP+T ++ + ++T   PL T    +   RV      K +
Sbjct: 64  PYIDLEQLTEEQVNTIKASWPGPVTWIVPVKTSTL--PLVTGQFDSIAVRVTAHPQVKAI 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G P+   SAN SG     +V  +  + +     +I  G +      + I + +   
Sbjct: 122 CNAFGKPITSTSANLSGLEPCRSVTEV-EAQLGDTGVVIFQGEVGNRTQPTEIRDAKTGN 180

Query: 188 KVR 190
            +R
Sbjct: 181 TLR 183


>gi|288803651|ref|ZP_06409081.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica D18]
 gi|302345636|ref|YP_003813989.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica ATCC
           25845]
 gi|288333891|gb|EFC72336.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica D18]
 gi|302149344|gb|ADK95606.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella melaninogenica ATCC
           25845]
          Length = 189

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 91/192 (47%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +   + ++KA E +  G  I  PT+TV+G+  D+ N  A+ ++Y +K+R     LIC V 
Sbjct: 1   MKQEDDIKKAIEVMRKGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + ++++  +V  ++  L +     P TL+LD     ++ P   A   +   R+    F
Sbjct: 61  SDNRLQRYVRNVPDVAWQLIEAV-EKPTTLILD--GAVNLAPNLIAEDGSIGIRITKEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           + +L   +   +   SAN SG+ +  N + I    +   +  + +    +      S+I+
Sbjct: 118 SHELCYRFQKAIVSTSANVSGEPAAQNYRDISQEILDG-VDYVCESRRQEHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +  + +V+++R
Sbjct: 177 KLAADGEVKVIR 188


>gi|89891475|ref|ZP_01202980.1| translation factor, Sua5/YciO/YrdC/YwlC family [Flavobacteria
           bacterium BBFL7]
 gi|89516249|gb|EAS18911.1| translation factor, Sua5/YciO/YrdC/YwlC family [Flavobacteria
           bacterium BBFL7]
          Length = 205

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 13/207 (6%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q++ I + N     L++  + +  G  +  PT+TVYGL  D  +  A+ ++ +I+     
Sbjct: 3   QLVRIYEDNPSPKELQRIAKAMRDGALVIYPTDTVYGLGCDINHKGALEKVAKIRGVKLE 62

Query: 58  NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                     +S + ++ S +D  +  L K   PGP T +L   +     P      KT 
Sbjct: 63  KANFSFICESLSNLSEYVSQIDTATFKLLKRNLPGPYTFILPGNNNL---PSVFKKKKTV 119

Query: 116 CFRVPCG-FTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173
             RVP       L++  G+P+   S     + I  T    ++       +  +IDGG   
Sbjct: 120 GIRVPDNSIAIGLVQALGNPIISTSIKDEDEVIEYTTDPSLIVEKWDNLVDYVIDGGYGD 179

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200
             + ST++++  ++ V ++R G   +E
Sbjct: 180 -NIASTVIDLTGDEPV-LVREGKGSVE 204


>gi|123444060|ref|YP_001008030.1| putative ribosome maturation factor [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|212288235|sp|A1JRY6|RIMN_YERE8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|122091021|emb|CAL13904.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 190

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  AL    + L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++ 
Sbjct: 6   NRAALSDVLQALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANY 65

Query: 68  SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +     L+          WPGP+T V+     T      T +  +   RV     
Sbjct: 66  EQLKPYVDDSALTDSQRETIFSVWPGPVTWVIPTHPET--PRWLTGSFDSLAVRVSDHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L   YG PL   SAN SGQ     ++ +        +P ++ G +      S I + 
Sbjct: 124 VQQLCSQYGKPLVSTSANLSGQEPCRTIEEV-RIQFGSSLP-VLAGLVGGRLNPSEIRDA 181

Query: 184 QCEKKVR 190
              K+ R
Sbjct: 182 LTGKQFR 188


>gi|284992526|ref|YP_003411080.1| Sua5/YciO/YrdC/YwlC family protein [Geodermatophilus obscurus DSM
           43160]
 gi|284065771|gb|ADB76709.1| Sua5/YciO/YrdC/YwlC family protein [Geodermatophilus obscurus DSM
           43160]
          Length = 224

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 5/194 (2%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           +  G  + +PT+TVYG+A D+  P+A+  L   K R    P+   + + S +    + V 
Sbjct: 35  IGNGELVLMPTDTVYGVAADAFTPSAVAALLAAKNRGRTMPVPVLIGEASTLVGLVTVVP 94

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
           P++  LA+ FWPG LTLVL+  S+  +         T   R+P     + +     PLA+
Sbjct: 95  PVATALAEAFWPGGLTLVLEHASS--LAWDLGDAEGTVAVRLPDDEVARDLLRRTGPLAV 152

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SANRSG+ + T     + + +     +++DGG       STIV+       R+LR G +
Sbjct: 153 SSANRSGRPAATTADEAV-AQLGVHAAVVLDGGPRAGSAASTIVDCTVPAP-RVLRVGAI 210

Query: 198 EIETLKRAISVELE 211
            ++ L+  +   ++
Sbjct: 211 PVDRLREVVPGIVD 224


>gi|308388638|gb|ADO30958.1| hypothetical protein NMBB_0480 [Neisseria meningitidis alpha710]
 gi|325130804|gb|EGC53538.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           OX99.30304]
 gi|325137003|gb|EGC59600.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M0579]
 gi|325202753|gb|ADY98207.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           M01-240149]
 gi|325208749|gb|ADZ04201.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           NZ-05/33]
          Length = 206

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRQGC 198


>gi|255318610|ref|ZP_05359841.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter radioresistens
           SK82]
 gi|262379163|ref|ZP_06072319.1| yrdC domain-containing protein [Acinetobacter radioresistens SH164]
 gi|255304292|gb|EET83478.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter radioresistens
           SK82]
 gi|262298620|gb|EEY86533.1| yrdC domain-containing protein [Acinetobacter radioresistens SH164]
          Length = 205

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 12/210 (5%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + +   N     + +A E + AG  +  PT+  Y +     N  A+ R+ +I+    
Sbjct: 1   MLHLRVHPENPQPRLITQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +      SD+S +  +A VD     L K   P   T +L   S      L     KT  
Sbjct: 61  KHQYAIMCSDLSDIATYAKVDNAMYRLLKANTPAITTFILPATSEVP-RRLMHPKRKTIG 119

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + L++  G PL   +    GQ    +  + +   + K I + IDGG    G
Sbjct: 120 LRIPSNPICQMLLQELGEPLLTSTLILPGQEDPLDDPYEIEQQLGKRIDVFIDGG---FG 176

Query: 176 LEST--IVNVQCEKKVRILRPGGLEIETLK 203
           + ST  IV++  E    I+R G  ++   +
Sbjct: 177 MLSTTSIVDLSGENP-EIIRYGEGDVSAFE 205


>gi|170697613|ref|ZP_02888702.1| SUA5 domain protein [Burkholderia ambifaria IOP40-10]
 gi|170137500|gb|EDT05739.1| SUA5 domain protein [Burkholderia ambifaria IOP40-10]
          Length = 241

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 21/231 (9%)

Query: 108 STANLKTACFRVPCGFTKKLIETY-------GHPLAIPSANRSGQISITNVKHILSSSIC 160
           S+    +   R P     + +             +A PSANR G +S T  +H+      
Sbjct: 8   SSGGQDSVGLRCPSHPVAQALLAAFSARRGGHGGVAAPSANRFGHVSPTTAQHVRDEF-- 65

Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYC-VDETST 219
            +   ++DGG S++G+ESTI+++       +LRPG +    +   +          + + 
Sbjct: 66  GDTVHVLDGGASEVGIESTILDLSRGFPA-LLRPGHVTPRQIADVLGRAPRLPDGGDATA 124

Query: 220 PQSPGMLKSHYAPRSQV----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNL 269
           P++ G LK+HYAPR+ +           L A   +     +            A     +
Sbjct: 125 PRASGTLKAHYAPRTPLALMPFDALEPLLAAAQTDGERVALVARASRAGRWAQADGVHFV 184

Query: 270 SKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           +     +  A +L+  ++  D +  + I    +P     IA+N+RL RAAA
Sbjct: 185 AAPEDPQAYARDLYGMLRALDRAQVARILVEKLPETVEWIAVNDRLGRAAA 235


>gi|168234459|ref|ZP_02659517.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469757|ref|ZP_03075741.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194456121|gb|EDX44960.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205331622|gb|EDZ18386.1| Sua5/YciO/YrdC/YwlC family protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 190

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +
Sbjct: 9   SIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQL 68

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
           K +     L+    K     WPGP+T V    +TT      T    +   RV        
Sbjct: 69  KPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTKHPLVVA 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG      V+ +  +    + P +++G        S I +    
Sbjct: 127 LCNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           +  R
Sbjct: 185 ELFR 188


>gi|325963838|ref|YP_004241744.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469925|gb|ADX73610.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3]
          Length = 281

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 13/219 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L  A   +     +  PT+TVYG+A D+ +P A+  L   K R    P    +  I+
Sbjct: 14  AKGLEHAQRAISEKKCVVFPTDTVYGIAADAFSPQAVTMLLVSKGRSRTMPPPVLIPRIN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +   A  V   +  LA+ FWPG LTL+L    + D     T    T   R+P     + 
Sbjct: 74  ALDGLATDVSADARKLAEAFWPGGLTLILHAQPSLDWDLGETKG--TVALRMPDDEIAQE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNV 183
           + T   PLA+ SANR+GQ             +   + + ++GG      ++ + STIV+ 
Sbjct: 132 LLTLTGPLAVSSANRTGQAPGQTAAAA-REQLADSVEVYLEGGFRPREGELAVPSTIVDA 190

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
               ++R++R G + ++ L+      +   +     P +
Sbjct: 191 TG-PRLRVVRNGAVSLDQLRE----HVPDVLGLGEIPIA 224


>gi|59801858|ref|YP_208570.1| hypothetical protein NGO1520 [Neisseria gonorrhoeae FA 1090]
 gi|194099331|ref|YP_002002431.1| hypothetical protein NGK_1806 [Neisseria gonorrhoeae NCCP11945]
 gi|254494302|ref|ZP_05107473.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268595399|ref|ZP_06129566.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599438|ref|ZP_06133605.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601955|ref|ZP_06136122.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604284|ref|ZP_06138451.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682743|ref|ZP_06149605.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684847|ref|ZP_06151709.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268687170|ref|ZP_06154032.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043170|ref|ZP_06568893.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398503|ref|ZP_06642681.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria gonorrhoeae F62]
 gi|59718753|gb|AAW90158.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193934621|gb|ACF30445.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226513342|gb|EEH62687.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548788|gb|EEZ44206.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583569|gb|EEZ48245.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586086|gb|EEZ50762.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588415|gb|EEZ53091.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268623027|gb|EEZ55427.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625131|gb|EEZ57531.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268627454|gb|EEZ59854.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012776|gb|EFE04759.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610974|gb|EFF40071.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria gonorrhoeae F62]
 gi|317164837|gb|ADV08378.1| hypothetical protein NGTW08_1416 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 234

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 42  ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 101

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 102 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDAPARAL-HPKRKTIGLRIPDNAVAQAL 160

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 161 LEELGGPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 219

Query: 188 KVRILRPG 195
           ++  +R G
Sbjct: 220 EL--VRRG 225


>gi|326332909|ref|ZP_08199166.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325949267|gb|EGD41350.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 242

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 5/187 (2%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLS 80
           G  + +PT+TVYG+A D+ +  A+  L   K R    P    +S+++ +   A  +   +
Sbjct: 27  GELVIVPTDTVYGVAADAFDKGAVAGLLAAKGRGRAMPPPVLISNVATLDALATRIPDWA 86

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSA 140
             L + FWPG LT+V     +           +T   R+P     + I     PLA  SA
Sbjct: 87  RTLVEEFWPGALTVVFHQQPSLQW--DLGEARQTVAVRIPDSDILRRIIDRVGPLATSSA 144

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           NR+   + TN        + K +  IIDGG S +G  STIV+   ++  ++LR G + I+
Sbjct: 145 NRTTMPAATNADQA-DEMLGKMVRAIIDGGESPVGEASTIVSATGDEP-KVLREGAISID 202

Query: 201 TLKRAIS 207
            +   ++
Sbjct: 203 RINELLA 209


>gi|212213462|ref|YP_002304398.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212]
 gi|212011872|gb|ACJ19253.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212]
          Length = 186

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 5/185 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L  G  IA PTE VYGL  D  N  A+ +L  IKKR      I   S+  
Sbjct: 5   TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126
            V+     +DP +L      WPGP T      ++ +     T    T   RV      K 
Sbjct: 65  QVEPLTEPIDPKALARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLAKL 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L + +  PL   SAN+ G+  I +VK IL      +I  I++G +      + I +    
Sbjct: 123 LCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKILEGSLGPTHRPTPIRDAITG 181

Query: 187 KKVRI 191
           + +R+
Sbjct: 182 EILRL 186


>gi|194289302|ref|YP_002005209.1| hypothetical protein RALTA_A1178 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223137|emb|CAQ69142.1| conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424]
          Length = 207

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L++A + L  G  +A+PT++ Y LA    +  A+ RL  ++     + L     D+S
Sbjct: 14  SRLLKQAAQILQKGGLVALPTDSSYALACRLDDKAAVERLRRLRGIDDRHHLTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +   A VD       K   PGP   +L+         LS    KT   RVP       L
Sbjct: 74  ELGNFARVDNRQYRWLKGATPGPYVFILEATKEVP-RRLSHPARKTIGVRVPEHAIPLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G  +  N    + + + K++ L++DGG +     +T++++   +
Sbjct: 133 LGETGEPLISATLQLPGDEAPLNDPAQIRARLEKQLDLVVDGGPAPA-QPTTVIDLTGGE 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-ELVRAG 198


>gi|53729058|ref|ZP_00134151.2| COG0009: Putative translation factor (SUA5) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208629|ref|YP_001053854.1| hypothetical protein APL_1161 [Actinobacillus pleuropneumoniae L20]
 gi|165976587|ref|YP_001652180.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190150488|ref|YP_001969013.1| hypothetical protein APP7_1219 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250090|ref|ZP_07336292.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253263|ref|ZP_07339412.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307246076|ref|ZP_07528158.1| hypothetical protein appser1_12790 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307248184|ref|ZP_07530212.1| hypothetical protein appser2_11650 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252800|ref|ZP_07534690.1| hypothetical protein appser6_13130 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255058|ref|ZP_07536876.1| hypothetical protein appser9_12920 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307257216|ref|ZP_07538987.1| hypothetical protein appser10_12150 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259494|ref|ZP_07541219.1| hypothetical protein appser11_12910 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261644|ref|ZP_07543311.1| hypothetical protein appser12_12040 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263832|ref|ZP_07545437.1| hypothetical protein appser13_12420 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097421|gb|ABN74249.1| hypothetical protein APL_1161 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165876688|gb|ABY69736.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189915619|gb|ACE61871.1| hypothetical protein APP7_1219 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302647945|gb|EFL78152.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651153|gb|EFL81307.1| putative translation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306853011|gb|EFM85234.1| hypothetical protein appser1_12790 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855361|gb|EFM87536.1| hypothetical protein appser2_11650 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306859699|gb|EFM91722.1| hypothetical protein appser6_13130 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861931|gb|EFM93907.1| hypothetical protein appser9_12920 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306864258|gb|EFM96170.1| hypothetical protein appser10_12150 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866430|gb|EFM98293.1| hypothetical protein appser11_12910 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868636|gb|EFN00446.1| hypothetical protein appser12_12040 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870821|gb|EFN02560.1| hypothetical protein appser13_12420 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 205

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 5/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E +  G  I  PT++ Y L        A+ R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   S  L K   P P T +L   +T D+        KT   RVP       L
Sbjct: 74  ELSTYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S          +    +   +   + LII GG   +G E T V    E+
Sbjct: 132 IAALGEPILSCSLMLPDTEITESDPDEIREHLEHRVDLIIHGGY--LGQEPTTVIDLTEE 189

Query: 188 KVRILRPGGLEI 199
             RI+R G  +I
Sbjct: 190 SPRIIREGSGDI 201


>gi|325335186|gb|ADZ11460.1| Sua5A [Riemerella anatipestifer RA-GD]
          Length = 466

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 9/195 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSDI 67
            N +++  + LD G  I  P++TVY L  D  N  A+ +L  +KK            +D+
Sbjct: 277 ENLIKEVIKTLDNGGLIIYPSDTVYALGCDINNIKAMEKLAALKKIKLEKAHFSIICNDL 336

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           S +      +D     L K   PG  T +L+        PL+    KT   RVP     +
Sbjct: 337 SHLSSFTKPIDNSVFRLLKSHIPGAFTFILEANKNL---PLAYKGHKTVGIRVPDHPIPQ 393

Query: 127 LI-ETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           LI E  G P+A  S     +I   +    +++      + ++ID G     + STIV++ 
Sbjct: 394 LIVEKLGRPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVASTIVDLT 452

Query: 185 CEKKVRILRPGGLEI 199
                 I+R G  E+
Sbjct: 453 S-GVAEIIRQGKGEL 466


>gi|291619138|ref|YP_003521880.1| YrdC [Pantoea ananatis LMG 20103]
 gi|291154168|gb|ADD78752.1| YrdC [Pantoea ananatis LMG 20103]
          Length = 190

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S +L+     L     IA PTE V+GL  D  N +A+  L  +K+RP    LI   +D  
Sbjct: 7   SGSLQDCVNHLKQHAVIAYPTEAVFGLGCDPDNESAVMALLALKRRPVEKGLILIAADYG 66

Query: 69  MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            +  + S      +        WPGP+T V+     T      T    +   RV      
Sbjct: 67  QLMPYVSDHVLTAMQRERMFACWPGPVTFVVPAAPHT--PRWLTGQFDSLAIRVSDHPDV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +  PL   SAN SGQ     V  +         P +++G        S I +V 
Sbjct: 125 QALCRAFDKPLVSTSANLSGQPPCRTVDEVKR-QFGPAFP-VLNGNTGGRLNPSEIRDVI 182

Query: 185 CEKKVR 190
              ++R
Sbjct: 183 SGNQIR 188


>gi|316984949|gb|EFV63905.1| yrdC domain protein [Neisseria meningitidis H44/76]
 gi|325134902|gb|EGC57535.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M13399]
 gi|325140950|gb|EGC63457.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis CU385]
 gi|325144974|gb|EGC67257.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           M01-240013]
 gi|325199623|gb|ADY95078.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis H44/76]
          Length = 206

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRQGC 198


>gi|257785106|ref|YP_003180323.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium parvulum DSM 20469]
 gi|257473613|gb|ACV51732.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium parvulum DSM 20469]
          Length = 216

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 8/199 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSR--NPTAIRRLYEIKKRPAMNPLICHVS 65
           D++ +  A E    G  + +PT++VYG+   +   NP   +R++EIK+RP    L   V 
Sbjct: 13  DASVVSLAVEVARRGGVLIMPTDSVYGIGAAATPQNP-GHKRIFEIKQRPVEQTLPWLVG 71

Query: 66  DISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             S ++K+A +    +  L + +WPG LTLV++         +   N +T   R+P    
Sbjct: 72  SKSDLQKYAHITHDWANKLVEAYWPGALTLVVNASENVPEEYVLPDN-RTIALRMPNSPL 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             ++ +  G PLA  SAN  G  S  +    L + + +E  L++DGG + + + STIV+ 
Sbjct: 131 VCRIAQQLGCPLATTSANTHGTPSAVDGCG-LEAELVEEADLVLDGGPAPLAIASTIVDC 189

Query: 184 QCEKKVRILRPGGLEIETL 202
              + +RILR G L  E +
Sbjct: 190 TGNE-LRILREGALPTEDI 207


>gi|332522804|ref|ZP_08399056.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314068|gb|EGJ27053.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 197

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 6/197 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    ++ G  + +PTETVYGL   + +  A+  +Y +K+RP    +  +V+D   + 
Sbjct: 1   MDKLKSIIENGGALVLPTETVYGLFAKAMDEQAVNMVYTLKQRPREKAMNLNVADYQAIL 60

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++   P  L  L   F PGPLT++L   +   +     +   T  FR+P     + +  
Sbjct: 61  DYSKDQPTYLKELYDAFLPGPLTIIL--KANDRVPFWINSGKDTVGFRLPKHPVTEQLIR 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN SG+ S      I+ +     +    D   S  G +STI+++    K +
Sbjct: 119 IAGPLIGPSANLSGRQSGCQYAEIIKA-FHNRVEGYEDD-QSLTGQDSTIIDLSG-PKAK 175

Query: 191 ILRPGGLEIETLKRAIS 207
           ILR G +    ++  IS
Sbjct: 176 ILRQGSISAADIQTKIS 192


>gi|270294398|ref|ZP_06200600.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20]
 gi|270275865|gb|EFA21725.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20]
          Length = 204

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  +  PT+T+Y +        AI R+  +K   P  N L   
Sbjct: 8   KNNNPADLQQVIDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKDIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S V ++A VD  +  L K   PG  T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSKVSEYAKVDNSTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNS 124

Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             +++      P+   +        I       ++       + L+IDGGI   G E ST
Sbjct: 125 IIQEIARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGST 182

Query: 180 IVNVQCEKKVRILRPG 195
           +V+    +   I+R G
Sbjct: 183 VVDCTNGEP-EIIRQG 197


>gi|222111934|ref|YP_002554198.1| sua5/ycio/yrdc/ywlc family protein [Acidovorax ebreus TPSY]
 gi|221731378|gb|ACM34198.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax ebreus TPSY]
          Length = 211

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L +G  +A+PT++ Y L     +  A+ R+  I++    + L     D+S
Sbjct: 14  PRLLKQAATLLSSGGILAVPTDSSYALVCRLDDKDAVDRIRRIRQINDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +A VD     L KL  PGP T +LD         +S    KT   RVP     + L
Sbjct: 74  ELANYAHVDNRQYRLLKLATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQML 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           +E +G PL   +   +G+    N    +     K++  I+D G   +   +T++++    
Sbjct: 133 LELHGAPLLATTLIPAGESEPLNDPQEIRERFEKQLDGILDAGGCPL-EPTTVLDLTPMN 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R GG  +  L
Sbjct: 192 TGGDPIVVREGGGSLAKL 209


>gi|77165846|ref|YP_344371.1| putative translation factor, Sua5/YciO/YrdC/YwlC [Nitrosococcus
           oceani ATCC 19707]
 gi|254433299|ref|ZP_05046807.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus oceani AFC27]
 gi|76884160|gb|ABA58841.1| translation factor SUA5 [Nitrosococcus oceani ATCC 19707]
 gi|207089632|gb|EDZ66903.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus oceani AFC27]
          Length = 209

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A  FL     I  PT++ Y L     N  A  R+ +++     +       D+S
Sbjct: 14  QRLLNQAVNFLQQEGLIVYPTDSGYALGCRVGNKAAADRIRQLRGLGNRHEFSLVSRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   +  L K   PG  T +           L     +T   RVP    T+ L
Sbjct: 74  ELSLYAKVGNSAFRLLKALTPGAYTFIFKATREVP-RRLQDPKRRTIGIRVPDNTVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + T G PL   +    G+         +   I  ++ LIIDGG       +T+V++  + 
Sbjct: 133 LATLGEPLISSTLLLPGEDIPLTDPEEIRDRIGSQVDLIIDGGYCGF-EPTTVVDLVEDM 191

Query: 188 KVRILRPG 195
             +++R G
Sbjct: 192 P-KVIREG 198


>gi|290770141|gb|ADD61901.1| putative protein [uncultured organism]
          Length = 204

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  +  PT+T+Y +        AI R+  +K   P  N L   
Sbjct: 8   KNNNPADLQQVIDLLNDGGILIYPTDTMYAIGCHGLKERAIERICRLKDIDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S V ++A VD  +  L K   PG  T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSKVSEYAKVDNSTFKLMKRNLPGAFTFILN---GTTRLPKIFRNRKEVGIRMPDNS 124

Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
             +++      P+   +        I       ++       + L+IDGGI   G E ST
Sbjct: 125 IIQEIARLLDAPIMTTTLPHDDNEDIEYCTDPELIDEKFGDIVDLVIDGGIG--GTEGST 182

Query: 180 IVNVQCEKKVRILRPG 195
           +V+    +   I+R G
Sbjct: 183 VVDCTNGEP-EIIRQG 197


>gi|254672732|emb|CBA06707.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 206

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRRGC 198


>gi|302037883|ref|YP_003798205.1| putative dsRNA-binding protein [Candidatus Nitrospira defluvii]
 gi|300605947|emb|CBK42280.1| putative dsRNA-binding protein, predicted ribosome maturation
           factor [Candidatus Nitrospira defluvii]
          Length = 215

 Score =  159 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 9/209 (4%)

Query: 3   IMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           ++  TD+     L    + LDA   +A+PTET YGLAV   +  A++ L E+K RPA  P
Sbjct: 4   VLPFTDTTCDLVLSDVRQVLDAHGVVALPTETYYGLAVRPTDTAALQHLMELKGRPADKP 63

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           ++  +     + +   S+ P +  L +LFWPGPLT+V       D+  L TA   T   R
Sbjct: 64  ILVLIGSPDQLPQLVRSIPPAAALLMELFWPGPLTIVFPAAP--DLPALLTAGTGTIGVR 121

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +      + +     PL   SANRS + S+     +  + +   + LI+DGG +  GL S
Sbjct: 122 LSPLLQLQHLLQRTGPLTGTSANRSSEPSLDTAAAVQGA-LGAGVDLILDGGPTPGGLPS 180

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           T+V+ +   +  +LR G L  + ++ A++
Sbjct: 181 TMVDAR--DRPHLLRAGALPTDLIRAALA 207


>gi|113867221|ref|YP_725710.1| putative translation factor (SUA5) [Ralstonia eutropha H16]
 gi|113525997|emb|CAJ92342.1| putative translation factor (SUA5) [Ralstonia eutropha H16]
          Length = 207

 Score =  159 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            +I  +   + L ++A + L  G  IA+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FEIHPLNPQSRLVKQAAQILQKGGLIALPTDSSYALACRLDDKAAVERLRRLRGIDDRHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD       K   PGP   +L+         LS    KT   RV
Sbjct: 65  LTLMCRDLSELGNFARVDNRQYRWLKGATPGPYVFILEATKEVP-RRLSHPARKTIGVRV 123

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G     N    + + + K++ L++ GG +     +
Sbjct: 124 PEHAIPLALLGETGEPLISATLQMPGDEEPLNDPAEIRARLEKQLDLVVCGGPAPA-QPT 182

Query: 179 TIVNVQCEKKVRILRPG 195
           T++++   +   ++R G
Sbjct: 183 TVIDLTGGEP-ELIRAG 198


>gi|254671067|emb|CBA07959.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 206

 Score =  159 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRQGC 198


>gi|91793800|ref|YP_563451.1| Sua5/YciO/YrdC/YwlC [Shewanella denitrificans OS217]
 gi|91715802|gb|ABE55728.1| translation factor SUA5 [Shewanella denitrificans OS217]
          Length = 206

 Score =  159 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 8/207 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q   I D N     + +A   L  G  I  PT++ Y L        A+ R+  I+K    
Sbjct: 3   QFFYIHDENPQARLISQAVAILKKGGVIVYPTDSGYALGCMIGEKDAMTRMVRIRKIEND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D+S +   A VD  +  L K   PGP T +           L     KT   
Sbjct: 63  HNFSLMCRDLSELANFAKVDNQAYRLLKSSTPGPYTFIFKATKEVP-KRLQCEKKKTIGI 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP     + L+     P+   S     ++   +    +   +  ++  I+ GG      
Sbjct: 122 RVPDNLIAQALLTALDAPMMSTSLVMPDELFAESDPEHIRDILEHQVDAIVHGGYLPEKQ 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            +T++++  E  + +LR G  +    +
Sbjct: 182 -TTVIDM-SEDTIDVLRHGAGDTSAFE 206


>gi|238921405|ref|YP_002934920.1| hypothetical protein NT01EI_3556 [Edwardsiella ictaluri 93-146]
 gi|238870974|gb|ACR70685.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 189

 Score =  159 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++L  A   L     IA PTE V+GL  D  +  A++ L  +K+RP    LI   +D  
Sbjct: 6   SDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSEPAVQALLGLKQRPWDKGLILIAADYQ 65

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            +  +   + L     A +F  WPGP+T V+   +  D     T    T   RV      
Sbjct: 66  QLLPYVCDEALQGERRAAVFSHWPGPVTWVMPARA--DTPRWLTGRFSTLAVRVSAHPQV 123

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L  +YG PL   SAN SG         +         P ++D  +      S I +  
Sbjct: 124 QQLCRSYGKPLVSTSANLSGLPPCRTAAEV-RQQFGSAFP-VLDAPVGGRQNPSEIRDAL 181

Query: 185 CEKKVR 190
             + +R
Sbjct: 182 SGELLR 187


>gi|212277726|sp|A8AQH7|RIMN_CITK8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 190

 Score =  159 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            ++A+  A   L     IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++ 
Sbjct: 6   PTDAIAAAVAVLHKECVIAYPTEAVFGVGCDPDSETAVNRLLELKQRPVEKGLILIAANF 65

Query: 68  SMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +                 WPGP+T V    +TT      T    +   RV     
Sbjct: 66  EQLKPYIDDSMLTDTQREAIFACWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L + YG PL   SAN +G      V+ +  +    + P +++G        S I + 
Sbjct: 124 VVSLCQAYGKPLVSTSANLTGLPPCRTVEEV-RAQFGADFP-VVEGETGGRLNPSEIRDA 181

Query: 184 QCEKKVR 190
              +  R
Sbjct: 182 LTGELFR 188


>gi|315126774|ref|YP_004068777.1| RNA binding protein [Pseudoalteromonas sp. SM9913]
 gi|315015288|gb|ADT68626.1| RNA binding protein [Pseudoalteromonas sp. SM9913]
          Length = 206

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + +  G  +  PT++ Y +  +  N  A  R+  I+     +       D+S
Sbjct: 14  PRLISQAVDIIKQGGVVVYPTDSGYAIGCNLGNKQAKERIERIRGIEKHHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
            +  +A VD     L K   PGP T +           L     KT   RV        L
Sbjct: 74  ELSTYARVDNQMFRLIKNNTPGPYTFIFKGTKEVP-KRLLNDKKKTIGIRVIEHPIACAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G+         +   + K + LII GG       +T++++  + 
Sbjct: 133 LAELGEPLMSCSLILPGEEFTQADPDDILERLDKHVDLIIHGGYLPE-QATTVIDLSEDD 191

Query: 188 KVRILRPGG 196
            ++ILR G 
Sbjct: 192 -IQILRVGC 199


>gi|325203543|gb|ADY98996.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           M01-240355]
          Length = 206

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRQGC 198


>gi|322799894|gb|EFZ21035.1| hypothetical protein SINV_05462 [Solenopsis invicta]
          Length = 239

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++  A E L  G  IA+PT+TVYGLA  + +  AI+RLYEIK+R    PL   +S++ 
Sbjct: 30  DRSIAMAAEMLRQGKVIALPTDTVYGLACLATDTCAIQRLYEIKRRDEGKPLAICLSNVK 89

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            V     +D +  ++ +   PGP T+ L       ++      + T   RVP     + +
Sbjct: 90  EVGTWGILDDIPANMLEQLLPGPYTICLRRTPA--LNRALNPGVDTVGIRVPDNKFIRSV 147

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG------ISKIGLESTIVN 182
                PLA+ SAN S + S  N       ++  E+  I          I +  + ST+V+
Sbjct: 148 AQIAGPLALTSANVSSEPSSLNPYE--FRALWSEVDGIFHDSNNCRKQIDQRRVGSTVVD 205

Query: 183 VQCEKKVRILRPG 195
           +       ++R G
Sbjct: 206 ISKPGCFTVVRHG 218


>gi|261391950|emb|CAX49412.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 206

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRRGC 198


>gi|156101636|ref|XP_001616511.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805385|gb|EDL46784.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 560

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 15/216 (6%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV-K 71
           R+    ++A   + +PTETVYGL  +S +  ++R ++++K RP  +P+I HV D+     
Sbjct: 23  RRLRAHIEADCLVGMPTETVYGLGGNSLSERSLRNIFQMKNRPVSDPIISHVYDVRQAFD 82

Query: 72  KHASVDP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
           +   V+P    +   L K FWPGPL+++    +  ++  + TA+      R+P      +
Sbjct: 83  QLYHVNPFEMFVIYSLGKSFWPGPLSII--AKAKKEVPLILTAHTGFCAVRMPRNNIALE 140

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +I+    P+A PSAN+   IS T   H+       E  LI D G   IG+EST++ +   
Sbjct: 141 IIKVSQVPIAAPSANKFQHISPTTAAHVYKE-FESENVLIFDDGQCDIGIESTVLKLLKF 199

Query: 187 KKV-----RILRPGGLEIETL-KRAISVELEYCVDE 216
           +KV       LR GG  +E + ++ +    E   D+
Sbjct: 200 RKVGGAQSNELRGGGQILEEIPQKELPQMEEVTTDD 235



 Score = 40.4 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 46/202 (22%)

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219
            +++ ++  GG     LE T   V  +        G      L  A++  L   ++    
Sbjct: 351 FEKVAILCSGGEGGAQLEGTPSEVAPKGGPSGAPNGA-----LNGALNNRLPSRLNGNPA 405

Query: 220 PQS------PGMLKSHYAPRSQVRLRAIHVN------------------PREALIRFGNV 255
            ++      PG+L +HY+P     L     +                   +  L+  GN 
Sbjct: 406 EEAAQNEVSPGLLLTHYSPVVSTYLLDGAPDGEDQNGSASKQPIASIRLAKYVLLDIGNS 465

Query: 256 PIKNIENAIISLNLSKTG--KLKE----AAFNLFNYMKIADDS----GASSIAFS----- 300
             ++  + +  +N+S  G    +E       N F +++ A++      A  I  S     
Sbjct: 466 FERHQGDFLKYMNISYGGVETKEEQTKLVMRNFFLFLRQAEELAIEHQAEGILISIVNLK 525

Query: 301 SIPNHGLGIAINNRLERAAAPR 322
            +    L  +I +R+ RAA+ R
Sbjct: 526 CVDEGSL--SIFDRVFRAASGR 545


>gi|325128851|gb|EGC51710.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis N1568]
 gi|325142951|gb|EGC65309.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           961-5945]
          Length = 206

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRQGC 198


>gi|283480062|emb|CAY75978.1| Uncharacterized protein yrdC [Erwinia pyrifoliae DSM 12163]
          Length = 190

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 57/194 (29%), Positives = 85/194 (43%), Gaps = 10/194 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M++  + DS  L +  E L     IA PTE V+GL  D  +  A+ RL  +K+RP    L
Sbjct: 1   MKMNPVVDS--LAQCVEQLAQSQVIAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGL 58

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I   +D   +    + + L +   A++F  WPGP+T VL   STT      T    T   
Sbjct: 59  ILIAADYQQLIPWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGQFTTLAV 116

Query: 118 RVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RV        L   +G PL   SAN +G     +V  +L +    + P ++ G       
Sbjct: 117 RVSDHPDVIALCHAFGKPLVSTSANLTGLPPCRHVAEVL-AQFGPDFP-VLKGETGGRLN 174

Query: 177 ESTIVNVQCEKKVR 190
            S I +V   + +R
Sbjct: 175 PSEIRDVLTGELIR 188


>gi|94994410|ref|YP_602508.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS10750]
 gi|94547918|gb|ABF37964.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pyogenes
           MGAS10750]
          Length = 206

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              ++ G  + +PTETVYGL   + +  A+  +Y++K+RP    +  +V+D + +   + 
Sbjct: 15  ASIIELGDALVLPTETVYGLFAKALDEKAVNAVYDLKQRPRDKAMNLNVADFNSILAFSK 74

Query: 76  VDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
             P  L  L + F PGPLT++L   +   +     + L T  FR+P       +     P
Sbjct: 75  EQPRYLKKLYQAFLPGPLTIILK--ANDQVPYWINSGLSTVGFRLPSHPITAALIQKTGP 132

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L  PSAN SG+ S     HI+     +      D  ++  G +STI+++  E  V ILR 
Sbjct: 133 LIGPSANLSGKASGRVFDHIMQDFDFQVFGYADDPFLT--GKDSTILDLSGECAV-ILRQ 189

Query: 195 GGLEIETL 202
           G +  E L
Sbjct: 190 GAITKEEL 197


>gi|325205504|gb|ADZ00957.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis
           M04-240196]
          Length = 206

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRRGC 198


>gi|187250922|ref|YP_001875404.1| putative translation factor [Elusimicrobium minutum Pei191]
 gi|186971082|gb|ACC98067.1| Putative translation factor [Elusimicrobium minutum Pei191]
          Length = 210

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 11/209 (5%)

Query: 2   QIMSITD--SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +I  I +     + +A   L  G  I  PT+TVYG+  D+ NP A++R+ EIK++P+  P
Sbjct: 4   RIFKIEEVTKEIMLQAVNDLKNGAVIIAPTDTVYGIMADALNPQAVKRMCEIKQKPSDVP 63

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L    SDI   K+ A   P +  LA+ +WPGPLT+++                 T   RV
Sbjct: 64  LQYLASDIKYAKRIALFSPKATLLAEKYWPGPLTIIVPPSKEG---KKYLRGFDTLGIRV 120

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P   F   L+  +G   A  SAN   +  I + + ++      ++  I  GG       S
Sbjct: 121 PKNDFIANLLNAFGGVAAASSANLHSKPVINSQEELIKE-FNGKVDYIFTGGQ-FSSESS 178

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           T++++   +  +I R GG++ + +    +
Sbjct: 179 TVLSL---EPFKIFREGGIKEKDVLNFFA 204


>gi|88860592|ref|ZP_01135229.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Pseudoalteromonas tunicata
           D2]
 gi|88817187|gb|EAR27005.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Pseudoalteromonas tunicata
           D2]
          Length = 187

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 9/192 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS+ D   L +    L+ G  I  PTE VYGL  D  N +A+  L  IK+RP    LI  
Sbjct: 1   MSVHDE--LTQCLNKLEQGGVICYPTEAVYGLGCDPDNESAVMALLAIKQRPVEKGLILI 58

Query: 64  VSDISMVKKHASVDPLSLH-LAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             + + +  +     + +   A++F  WPG +T ++   STT      T    T   RV 
Sbjct: 59  ADNYAQLLPYVDDAKIPMDKRAEIFSAWPGAVTWIMPAKSTT--PKWLTGKFDTIAVRVT 116

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K+L + +  PL   SAN +GQ  + ++     +     +   + G +      S 
Sbjct: 117 NHSVVKQLCQQFNKPLVSTSANLTGQAPVRSLDEA-KAMFTNNVAYYVAGQLGGNTKPSQ 175

Query: 180 IVNVQCEKKVRI 191
           I + +  +  R 
Sbjct: 176 IKDARTGQLFRD 187


>gi|282860060|ref|ZP_06269141.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bivia JCVIHMP010]
 gi|282587148|gb|EFB92372.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bivia JCVIHMP010]
          Length = 189

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++KA E +  G  I  PT+TV+G+  D+ NP A+ ++Y++K+R     LIC V   +
Sbjct: 4   EDDIKKAIEVMRQGGVILYPTDTVWGIGCDATNPEAVAKVYKLKRRDDSKALICLVDSEN 63

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            ++++  +V  ++  L +     P TL+LD     ++ P   A   +   R+    F+ +
Sbjct: 64  RLQRYVRNVPDVAWQLMEAVT-KPTTLILDN--AVNLAPNLIAEDGSIGMRITKEPFSHE 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQ 184
           L   +   +   SAN SG+ +  N   I    +   +  +      +      S+I+ + 
Sbjct: 121 LCFRFQKAIVSTSANISGEQAAQNYGDISQEILEG-VDYVCFARRQEHEPHTPSSIIKLS 179

Query: 185 CEKKVRILR 193
            +  V I+R
Sbjct: 180 ADGTVNIIR 188


>gi|238899277|ref|YP_002924960.1| putative translation factor, yrdC domain protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467038|gb|ACQ68812.1| putative translation factor, yrdC domain protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 206

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 3/186 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + ++ + L  G  +  PT++ Y L       +A  R+ +I++R + +       D+S + 
Sbjct: 17  INQSIDLLKKGSVMVYPTDSGYALGCLLEKKSAQERICQIRERTSDHHFTLVCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A +D  +  L K   PG  T +L          L     KT   RVP       L++ 
Sbjct: 77  LYAYLDNSAFRLIKNNTPGRYTFILKATKEVP-RRLMNEKRKTIGLRVPSNDIALALLDA 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   +    G          +   + K++ LIIDGG       +TI+++     V 
Sbjct: 136 LNEPLMSTTLILPGDDFAQFDPEQIKQKLGKKVDLIIDGG-CIAEQPTTIIDLTDGNPVL 194

Query: 191 ILRPGG 196
           +   GG
Sbjct: 195 VRSGGG 200


>gi|224283868|ref|ZP_03647190.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 229

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L +A   +  G  + IPT+TVYG+A D RN  AI R+Y++K RP    L
Sbjct: 11  MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 70

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTA--NLKTACF 117
              ++ +  +       P  L  LA  F PG  + +        +  +S      +T   
Sbjct: 71  QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATPQGRRTQGI 130

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T +++   G PLA  SANRSG  S   V+  + +    ++ L +DGG ++  +
Sbjct: 131 RVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAVQA-FGDDVQLYLDGGPTQGHV 188

Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAI 206
            ST+V  +      + ILR G +    +++A+
Sbjct: 189 ASTVVAADPHERDGIVILREGVIPQPVVRKAV 220


>gi|325132982|gb|EGC55659.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis M6190]
 gi|325138970|gb|EGC61520.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis ES14902]
          Length = 206

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRQGC 198


>gi|301614722|ref|XP_002936826.1| PREDICTED: hypothetical protein LOC100498107 [Xenopus (Silurana)
           tropicalis]
          Length = 866

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++LR     LD G    IPT+TVY LA   ++P AI R+Y IK+RP+  P+   +S++ 
Sbjct: 652 TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 711

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122
            ++  +    PL      L +PG ++ ++   + L    + P         +   RVP  
Sbjct: 712 QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 771

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLAI SAN SG+   T+   +++  +  ++  ++  G S   + ST+VN
Sbjct: 772 SVTAHLTDMTGPLAITSANPSGESDSTHHDMVIT-RLSDKLDAVLCDGFSNELVGSTVVN 830

Query: 183 VQ--CEKKVRILRPGGLEIETLKRA 205
                E  ++ILR G +    + + 
Sbjct: 831 CTKIDEGTIKILREGCVPTTKIMQL 855


>gi|299067192|emb|CBJ38388.1| conserved protein of unknown function, translation factor domain
           (SUA5) [Ralstonia solanacearum CMR15]
          Length = 207

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 4/198 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E + AG  IA+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD       K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G  +  N    + + + +++ L+IDGG +     +
Sbjct: 124 PDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRARLERQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPGG 196
           T++++   +   + R  G
Sbjct: 183 TVIDLTGGEPELVRRGRG 200


>gi|120436628|ref|YP_862314.1| YrdC domain-containing protein [Gramella forsetii KT0803]
 gi|117578778|emb|CAL67247.1| protein containing YrdC domain [Gramella forsetii KT0803]
          Length = 189

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 3/186 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R   + L  G  I  PT+TV+G+  D+ N  A+ +++++KKR     LIC VS+  
Sbjct: 5   EQEVRNCIDVLKKGGIILYPTDTVWGIGCDATNANAVDKVFQLKKREESKALICLVSNFK 64

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127
           M++++    P + +    +   P T++ D      I     ++  +   R V   F   L
Sbjct: 65  MLEQYVEDVPETAYDILKYAKKPTTVIYD--KPVHIAENLVSDDDSLGIRVVRDTFCSDL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    PL   SAN SGQ +  +   I    +     ++      K    S I+ +  + 
Sbjct: 123 IKKLKRPLVSTSANVSGQPTPQSFDQITPQILKGVDYVVNLQRSKKSPRPSAIIKLSNDG 182

Query: 188 KVRILR 193
            V+++R
Sbjct: 183 LVKVIR 188


>gi|237748690|ref|ZP_04579170.1| translation factor [Oxalobacter formigenes OXCC13]
 gi|229380052|gb|EEO30143.1| translation factor [Oxalobacter formigenes OXCC13]
          Length = 208

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 89/197 (45%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDSNAL-RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           ++I  +   + L +KA + + AG  I +PT++ Y L     +  A+ R+ +I++    + 
Sbjct: 6   LEIHPVDPQDRLVKKAADIIRAGGVIVLPTDSSYALVCRLDDKAAVDRIRQIRQIDERHL 65

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+  V  +A VD  S  L K   PG  T +L          LS  + KT   R+
Sbjct: 66  LTLLCRDLKEVGSYAQVDNGSYRLLKSATPGAFTFILRASKEVP-RRLSHPSRKTIGLRI 124

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + L++  G PL   +    G+        ++   + K +  ++DGG   + L +
Sbjct: 125 PDNRIVQALLDELGEPLIGTTVILPGEEDPYTEGDVIQERLEKLVDAVVDGGACGL-LPT 183

Query: 179 TIVNVQCEKKVRILRPG 195
           T+V++   ++  ++R G
Sbjct: 184 TVVDLTG-REAELVRSG 199


>gi|301614720|ref|XP_002936825.1| PREDICTED: uncharacterized protein ywlC-like [Xenopus (Silurana)
           tropicalis]
          Length = 243

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++LR     LD G    IPT+TVY LA   ++P AI R+Y IK+RP+  P+   +S++ 
Sbjct: 29  TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 88

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122
            ++  +    PL      L +PG ++ ++   + L    + P         +   RVP  
Sbjct: 89  QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 148

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLAI SAN SG+   T+   +++  +  ++  ++  G S   + ST+VN
Sbjct: 149 TVTAHLTDMTGPLAITSANPSGESDSTHHDMVIT-RLSDKLDAVLCDGFSNELVGSTVVN 207

Query: 183 VQ--CEKKVRILRPGGLEIETLKRA 205
                E  ++ILR G +    + + 
Sbjct: 208 CTKIDEGTIKILREGCVPTTKIMQL 232


>gi|86132791|ref|ZP_01051383.1| Sua5/YciO/YrdC/YwlC family protein [Dokdonia donghaensis MED134]
 gi|85816745|gb|EAQ37931.1| Sua5/YciO/YrdC/YwlC family protein [Dokdonia donghaensis MED134]
          Length = 186

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 3/182 (1%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
             A   L  G  I  PT+TV+G+  D+ NP A+ ++Y +KKR     LIC VSD  M+ +
Sbjct: 6   DAALAVLKRGGLILYPTDTVWGIGCDATNPDAVDKVYALKKRAESKSLICLVSDFKMLNQ 65

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETY 131
           +    P   +    +   P T++ D      +     A   +  FRV    F   L++ +
Sbjct: 66  YVENIPEVAYDILKYAAKPTTIIYD--DPIRVATNVIAPDNSTAFRVCRNQFCNFLLKKF 123

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+   SAN +GQ +  +   I    I     ++      K    S I+ +  + KV I
Sbjct: 124 KKPIVSTSANITGQPTPQSFSEISQEIIDGVDYVVNIDRSRKSSKPSAIIKLTEDGKVTI 183

Query: 192 LR 193
           +R
Sbjct: 184 IR 185


>gi|325269063|ref|ZP_08135684.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella multiformis DSM
           16608]
 gi|324988684|gb|EGC20646.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella multiformis DSM
           16608]
          Length = 189

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +   + +RKA E +  G  I  PT+TV+G+  D+ N  A+ ++Y +K+R     LIC V 
Sbjct: 1   MKQEDDIRKAIEVMRKGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
               ++++  +V  ++  L       P TL+LD     ++     A   +   R+    F
Sbjct: 61  SDDRLQRYVRNVPDVAWQLIDAV-ERPTTLILD--GAVNLAGNLIAEDGSIGIRITKEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           + +L   +   +   SAN SG+ +  N   I    +   +  I +    +    + S+IV
Sbjct: 118 SHELCYRFQKAVVSTSANISGEPAAQNYCDISQEILDG-VDYICESRRQEHKPHVPSSIV 176

Query: 182 NVQCEKKVRILR 193
            +  + +V+I+R
Sbjct: 177 KLGIDGQVKIIR 188


>gi|325198880|gb|ADY94336.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria meningitidis G2136]
          Length = 206

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKEVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRRGC 198


>gi|161870640|ref|YP_001599813.1| hypothetical protein NMCC_1710 [Neisseria meningitidis 053442]
 gi|161596193|gb|ABX73853.1| putative translation factor [Neisseria meningitidis 053442]
          Length = 206

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVIDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRQGC 198


>gi|39938501|ref|NP_950267.1| translation factor [Onion yellows phytoplasma OY-M]
 gi|39721610|dbj|BAD04100.1| translation factor [Onion yellows phytoplasma OY-M]
          Length = 185

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 6/184 (3%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
            I  PT+TVYG+     +   +  +Y+IKKRP    ++   + +   KK     P SL L
Sbjct: 6   IIIFPTDTVYGMGAKLYDKKGLNCIYQIKKRPLNKSIVVLCASLQQAKKLVQFSPQSLKL 65

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A  FWPGPLTL+L     T +   S    KT   R+P       I     PL   S N+S
Sbjct: 66  ALHFWPGPLTLILP----TTLKYFSKTKAKTLGIRIPNHPLALEILKKNGPLKTTSVNQS 121

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
                 N    + +    ++ LI       + + STIV++   + V ILR G +  E + 
Sbjct: 122 NHP-PLNDYQTIFNIYYNKVALIYQNYHPILKISSTIVDLTTFQPV-ILRQGTITQEEIL 179

Query: 204 RAIS 207
           + + 
Sbjct: 180 QILK 183


>gi|170061182|ref|XP_001866124.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus]
 gi|167879525|gb|EDS42908.1| ischemia/reperfusion inducible protein [Culex quinquefasciatus]
          Length = 242

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 102/206 (49%), Gaps = 8/206 (3%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++ I   +A+ +A   L++G  I +PT+TVYGLA  + +P AI++LY+IK R    P+  
Sbjct: 26  VIDIKSPDAILQAANLLESGKVIGLPTDTVYGLACSANDPAAIKKLYDIKGRICTKPIAI 85

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V ++  V      D L + L +   PG +T+V+      D +P     ++    RVP  
Sbjct: 86  CVPEVKDVLYWGKADHLPMGLLQELLPGAVTIVVKKSHYLD-NPFLNPGVEKIGIRVPKF 144

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE---- 177
            F + + + +  P+A+ SAN S Q S   +      ++  E+  + DGG      E    
Sbjct: 145 NFIRNVTKQFKAPMALTSANFSSQKSTLEITE--FKALWPELGAVFDGGQLGQSEEQRAA 202

Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203
           ST++++   +K  I+R G     T++
Sbjct: 203 STVIDLSEPRKFEIIRTGVAIKRTIE 228


>gi|310287869|ref|YP_003939127.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum S17]
 gi|313141023|ref|ZP_07803216.1| conserved protein in the Sua5/YciO/YrdC family protein
           [Bifidobacterium bifidum NCIMB 41171]
 gi|309251805|gb|ADO53553.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum S17]
 gi|313133533|gb|EFR51150.1| conserved protein in the Sua5/YciO/YrdC family protein
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 219

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L +A   +  G  + IPT+TVYG+A D RN  AI R+Y++K RP    L
Sbjct: 1   MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 60

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTA--NLKTACF 117
              ++ +  +       P  L  LA  F PG  + +        +  +S      +T   
Sbjct: 61  QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATPQGRRTQGI 120

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T +++   G PLA  SANRSG  S   V+  + +    ++ L +DGG ++  +
Sbjct: 121 RVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAVQA-FGDDVQLYLDGGPTQGHV 178

Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAI 206
            ST+V  +      + ILR G +    +++A+
Sbjct: 179 ASTVVAADPHERDGIVILREGVIPQPVVRKAV 210


>gi|254805532|ref|YP_003083753.1| putative translation factor [Neisseria meningitidis alpha14]
 gi|254669074|emb|CBA07599.1| putative translation factor [Neisseria meningitidis alpha14]
          Length = 206

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRRGC 198


>gi|300777696|ref|ZP_07087554.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
           35910]
 gi|300503206|gb|EFK34346.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 203

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 13/202 (6%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I       N + +  + L+ G  I  P++TVY L  +  +  A+ +L ++KK    
Sbjct: 3   KILKIYPDNPQENLVNEVIKTLNNGGLIIYPSDTVYALGCNIFDIKAMEKLAQLKKMKLE 62

Query: 58  NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                   +D+S +      +D       K   PGP T +L+   +    PL+    KT 
Sbjct: 63  KSKFSIICNDLSHLSDFTRPIDTSVFRFLKSHLPGPFTFILEANKSL---PLAYKGHKTI 119

Query: 116 CFRVPCGFTKKLI-ETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISK 173
             RVP     +LI E  GHP+A  S     +I   +    +++      + ++ID G   
Sbjct: 120 GIRVPDHPIPQLIVEKLGHPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD 179

Query: 174 IGLESTIVNVQCEKKVRILRPG 195
             + STIV++   +   I+R G
Sbjct: 180 -NVASTIVDLTSGEP-EIIRQG 199


>gi|117619223|ref|YP_854792.1| Sua5/YciO/YrdC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|212277665|sp|A0KEX6|RIMN_AERHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|117560630|gb|ABK37578.1| Sua5/YciO/YrdC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 186

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 7/187 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N    A   L     IA  TE V+GL  D  + +A+ RL  IK+RP    LI   +D++
Sbjct: 2   PNEFELAVAALQRDGVIAYATEAVFGLGCDPDSESAVHRLLAIKQRPVEKGLILIAADLA 61

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            ++ +  +D L+   L   +  WPGP T ++   S T      T    T   RV      
Sbjct: 62  QLQDYIDLDQLTSEQLARVEASWPGPFTWIMPARSNTPA--WLTGQFTTLAVRVTAHPQV 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +G PL   SAN +G+     V   +   +  ++  I+ G +      S I + +
Sbjct: 120 QALCRAFGKPLVSTSANLTGEEPARRVAD-IGELLASQLAYILPGEVGGQANPSEIKDAR 178

Query: 185 CEKKVRI 191
               +R 
Sbjct: 179 TGAIIRP 185


>gi|218295665|ref|ZP_03496461.1| Sua5/YciO/YrdC/YwlC family protein [Thermus aquaticus Y51MC23]
 gi|218243824|gb|EED10351.1| Sua5/YciO/YrdC/YwlC family protein [Thermus aquaticus Y51MC23]
          Length = 196

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 17/198 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A E L  G  +A PT+TV+G+     +  A RR+Y +K R    PL   V+ + 
Sbjct: 6   QKELAQAAEVLKKGGLVAFPTDTVWGVMARMEDEAACRRIYALKGREEKKPLQVLVAGLE 65

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT- 124
              + + + PL    L LA+ FWPG LT+V+       I P  +    +   R+P     
Sbjct: 66  DALRLSDLGPLEERFLRLAEAFWPGALTIVVP---GRGIPPWIS-RDGSVGLRMPAHEAL 121

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L+   G      S NRSG+  +            +  P+         GL S++V+++
Sbjct: 122 RELLRRVGGHATATSLNRSGEPPVKTEAEA------RAFPVDFVFPGEATGLASSVVDLR 175

Query: 185 CEKKVRILRPGGLEIETL 202
                 ILR G +  E L
Sbjct: 176 TG---EILREGAIPKEAL 190


>gi|311064749|ref|YP_003971474.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum
           PRL2010]
 gi|310867068|gb|ADP36437.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium bifidum
           PRL2010]
          Length = 233

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   +  +L +A   +  G  + IPT+TVYG+A D RN  AI R+Y++K RP    L
Sbjct: 15  MSAVRKVNEESLAEAASVIAGGGLVVIPTDTVYGVACDPRNEAAIDRIYQVKSRPRFKAL 74

Query: 61  ICHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTA--NLKTACF 117
              ++ +  +       P  L  LA  F PG  + +        +  +S      +T   
Sbjct: 75  QVLLASVDQLDGLGLDLPSPLNRLAAQFLPGAFSPIAVAREDCTLATVSATPQGRRTQGI 134

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP    T +++   G PLA  SANRSG  S   V+  + +    ++ L +DGG ++  +
Sbjct: 135 RVPNSALTLRILNELG-PLAASSANRSGDESAQTVEEAVQA-FGDDVQLYLDGGPTQGHV 192

Query: 177 ESTIV--NVQCEKKVRILRPGGLEIETLKRAI 206
            ST+V  +      + ILR G +    +++A+
Sbjct: 193 ASTVVAADPHERDGIVILREGVIPQPVVRKAV 224


>gi|303244474|ref|ZP_07330809.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis
           IH1]
 gi|302485172|gb|EFL48101.1| Sua5/YciO/YrdC/YwlC family protein [Methanothermococcus okinawensis
           IH1]
          Length = 212

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 22/219 (10%)

Query: 1   MQIMSITDSNALRK--------------ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR 46
           M+I+ + + N L++                + +  G  I   T+T+YGL  +  +  A++
Sbjct: 1   MKILKLNELNELKENNMENEKTKKEIEKIKKMILEGKIIICGTDTLYGLCANVLDENAVK 60

Query: 47  RLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP 106
           ++Y++KKR    P+   + D   ++K+A V+ +S  +   F PG LT++L    T     
Sbjct: 61  KVYKLKKRDLNKPISIFLKDKEDIEKYAYVNEISKKIIDKFLPGALTIILKKKDTIP--- 117

Query: 107 LSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            +  +      R+P     +  E    PL   SAN SG+   T+VK  +S  + K + LI
Sbjct: 118 -NIVSKDYIGIRIPDSEIIR--ELSIVPLTATSANLSGEKPPTSVKE-ISDELRKNVDLI 173

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205
           ID G+ K    STI+ +  +  + ++R G +  + +K+ 
Sbjct: 174 IDTGVCKYKTPSTIIKILNDN-IELIREGAIPFDKIKKI 211


>gi|221194923|ref|ZP_03567979.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium rimae ATCC 49626]
 gi|221184826|gb|EEE17217.1| Sua5/YciO/YrdC/YwlC family protein [Atopobium rimae ATCC 49626]
          Length = 217

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 6/204 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPT-AIRRLYEIKKRPAMNPLICHVSDI 67
           S  + +A E   AG  + +PT++VYG+   + +      R++ IK R     L   V   
Sbjct: 14  SAVIAQAVEVARAGGVLIVPTDSVYGIGAAAFSNNPGHERIFTIKHRDRTQTLPWLVGKK 73

Query: 68  SMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           S   ++A   P  +  L K +WPG LTLV+    T     +   N  T   R+P      
Sbjct: 74  SDFDRYAKDAPAWAYRLVKAYWPGALTLVVKAADTVPDEYVLPQNH-TIALRMPASKLVC 132

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           ++I   G PLA  SAN  G  S  + K +    +     LI+DGG + + + STIV+   
Sbjct: 133 EIINGLGVPLATTSANIHGNPSAVSEKDV-EQELIDCSDLILDGGPAPLAVASTIVDCTS 191

Query: 186 EKKVRILRPGGLEIETLKRAISVE 209
            K   ILR G +  E L      E
Sbjct: 192 -KTPCILREGAIPTEALLATAGFE 214


>gi|269213846|ref|ZP_05982985.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria cinerea ATCC 14685]
 gi|269145185|gb|EEZ71603.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria cinerea ATCC 14685]
          Length = 213

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 21  ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDQKHHLTLVCADLS 80

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 81  ELGSYAKIDNVQFRQLKAATPGPYTCILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 140 LEELGEPLLSCTLMLPEDGEPLTDPYEIRDRLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 198

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 199 EL--VRQGC 205


>gi|50122916|ref|YP_052083.1| putative DNA topoisomerase [Pectobacterium atrosepticum SCRI1043]
 gi|49613442|emb|CAG76893.1| putative DNA topoisomerase [Pectobacterium atrosepticum SCRI1043]
          Length = 372

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 8/176 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   ++ S +  + +   
Sbjct: 199 LHNEQVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAANFSQLVPYINDSA 258

Query: 79  LSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           LS     +    WPGP+T VL    TT      T    +   RV      K+L + YG P
Sbjct: 259 LSDEQKAMMFSTWPGPVTWVLPAKPTTPQ--WLTGQFSSLAVRVSDHPLVKELCQHYGKP 316

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           L   SAN SGQ      + + S     + P ++ G +      S I +V   + +R
Sbjct: 317 LVSTSANLSGQPPCRTAQEV-SLQFGGDFP-VLVGDVGGRMNPSEIRDVLTGELIR 370


>gi|154705971|ref|YP_001425408.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|212277672|sp|A9KH21|RIMN_COXBN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|154355257|gb|ABS76719.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 186

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 5/185 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L  G  IA PTE VYGL  D  N  A+ +L  IKKR      I   S+  
Sbjct: 5   TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126
            V+     +DP +L      WPGP T      ++ +     T    T   RV      K 
Sbjct: 65  QVEPLTEPIDPKALARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLAKL 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L + +  PL   SAN+ G   I +VK IL      +I  I++G +      + I +    
Sbjct: 123 LCQRFAGPLISSSANQEGGPPIRDVK-ILRLVFGNKIDKILEGPLGPTHRPTPIRDAITG 181

Query: 187 KKVRI 191
           + +R+
Sbjct: 182 EILRL 186


>gi|268597262|ref|ZP_06131429.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268551050|gb|EEZ46069.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 234

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 42  ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKVAMERILSIRKIDLKHHLTLMCADLS 101

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 102 ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDAPARAL-HPKRKTIGLRIPDNAVAQAL 160

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 161 LEELGGPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 219

Query: 188 KVRILRPG 195
           ++  +R G
Sbjct: 220 EL--VRRG 225


>gi|269140536|ref|YP_003297237.1| putative ribosome maturation factor [Edwardsiella tarda EIB202]
 gi|267986197|gb|ACY86026.1| putative ribosome maturation factor [Edwardsiella tarda EIB202]
 gi|304560321|gb|ADM42985.1| hypothetical protein ETAF_2883 [Edwardsiella tarda FL6-60]
          Length = 189

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++L  A   L     IA PTE V+GL  D  + +A++ L ++K+RP    LI   +D  
Sbjct: 6   SDSLAAAVAALRQQRVIAYPTEAVFGLGCDPDSESAVQTLLDLKQRPWDKGLILIAADYQ 65

Query: 69  MVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            +  +   + L     A +F  WPGP+T V+   +  D     T    T   RV      
Sbjct: 66  QLLPYVCDEALQGERRAAVFSRWPGPVTWVMPARA--DTPRWLTGRFSTLAVRVSAHPQV 123

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L  +YG PL   SAN SG         +         P +++  +      S I +  
Sbjct: 124 QQLCRSYGKPLVSTSANLSGLPPCRTAAEV-RQQFGSAFP-VLNAPVGGRQNPSEIRDAL 181

Query: 185 CEKKVR 190
             + +R
Sbjct: 182 SGELLR 187


>gi|30064604|ref|NP_838775.1| putative ribosome maturation factor [Shigella flexneri 2a str.
           2457T]
 gi|212288262|sp|Q0T019|RIMN_SHIF8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|30042863|gb|AAP18586.1| hypothetical protein S3538 [Shigella flexneri 2a str. 2457T]
 gi|313648795|gb|EFS13235.1| ribosome maturation factor [Shigella flexneri 2a str. 2457T]
 gi|332754003|gb|EGJ84376.1| ribosome maturation factor [Shigella flexneri 2747-71]
 gi|332766533|gb|EGJ96740.1| protein involved in synthesis of
           threonylcarbamoyladenosine-modified tRNA [Shigella
           flexneri 2930-71]
 gi|332998296|gb|EGK17897.1| ribosome maturation factor [Shigella flexneri VA-6]
 gi|333012315|gb|EGK31696.1| ribosome maturation factor [Shigella flexneri K-304]
 gi|333014510|gb|EGK33858.1| ribosome maturation factor [Shigella flexneri K-227]
          Length = 190

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|322389537|ref|ZP_08063088.1| Sua5/YciO/YrdC family protein [Streptococcus parasanguinis ATCC
           903]
 gi|321143812|gb|EFX39239.1| Sua5/YciO/YrdC family protein [Streptococcus parasanguinis ATCC
           903]
          Length = 203

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 11/205 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L+AG  + +PTETVYG+   + +  A+  +YE+K+RP    L  +V+    V+ ++   P
Sbjct: 8   LEAGRAVILPTETVYGIFAKALDQEAVDYIYELKRRPREKALNLNVAGEEDVRIYSKDQP 67

Query: 79  LSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLA 136
             L  L   F PGPLT++L   +   +     + L T  FR+P    T +LI  YG PL 
Sbjct: 68  SYLTKLIDSFLPGPLTIILQ--ANEKVPGWIHSGLDTVGFRIPAHPKTLELIRKYG-PLV 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG  S T  + I+S    + +P I D      G +STI+++   K  RILR G 
Sbjct: 125 GPSANLSGHASGTKYQAIVSE-FDQVVPGIEDDDF-LTGQDSTILDISGSK-ARILRQGS 181

Query: 197 LEIETLKRAISVELEYCVDETSTPQ 221
           +    L   ++   E   +E   PQ
Sbjct: 182 ITKADL---LAQVPELSFEEDELPQ 203


>gi|82545645|ref|YP_409592.1| ribosome maturation factor [Shigella boydii Sb227]
 gi|123558527|sp|Q31VZ4|RIMN_SHIBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|81247056|gb|ABB67764.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320187004|gb|EFW61716.1| putative ribosome maturation factor [Shigella flexneri CDC 796-83]
 gi|332090353|gb|EGI95451.1| ribosome maturation factor [Shigella boydii 3594-74]
          Length = 190

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P+++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFPVVL-GETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|319795295|ref|YP_004156935.1| sua5/ycio/yrdc/ywlc family protein [Variovorax paradoxus EPS]
 gi|315597758|gb|ADU38824.1| Sua5/YciO/YrdC/YwlC family protein [Variovorax paradoxus EPS]
          Length = 211

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 7/193 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L  G  +A+PT++ Y LA    +  A+ +L  I++    + L     D+S
Sbjct: 14  QRLLKQAVTLLARGEIVAVPTDSSYALACHLDDKDAVDQLRRIRQVDEKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PGP T +L+         +S    KT   RVP      +L
Sbjct: 74  ELANYARVDNKQYRLLKAATPGPYTFLLEATKEVP-RRVSHPQRKTIGLRVPDHKVLLEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV---- 183
           +  +G PL   +    G+    N    +     K+I  +ID G       +T+V++    
Sbjct: 133 LALHGAPLLATTLIAPGETEALNDAQTIRERFEKQIGAVIDAGACPS-QPTTVVDLTPMG 191

Query: 184 QCEKKVRILRPGG 196
             +  V + +  G
Sbjct: 192 TGDDPVVVRQGRG 204


>gi|301614718|ref|XP_002936824.1| PREDICTED: uncharacterized protein ywlC-like [Xenopus (Silurana)
           tropicalis]
          Length = 243

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 9/205 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++LR     LD G    IPT+TVY LA   ++P AI R+Y IK+RP+  P+   +S++ 
Sbjct: 29  TSSLRTIANILDNGGVCGIPTDTVYALAASCKHPEAINRIYSIKERPSEKPICICISNLD 88

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHPL--STANLKTACFRVPCG 122
            ++  +    PL      L +PG ++ ++   + L    + P         +   RVP  
Sbjct: 89  QLRVISPPFSPLLWRFMDLVYPGGISCIVQKGEWLKKLGVGPAYERVGTNDSIMIRVPDH 148

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLAI SAN SG+   T+   +++  +  ++  ++  G S   + ST+VN
Sbjct: 149 TVTAHLTDMTGPLAITSANPSGESDSTHHDMVIT-RLSDKLDAVLCDGFSNELVGSTVVN 207

Query: 183 VQ--CEKKVRILRPGGLEIETLKRA 205
                E  ++ILR G +    + + 
Sbjct: 208 CTKIDEGTIKILREGCVPTTKIMQL 232


>gi|298252615|ref|ZP_06976409.1| putative translation factor SUA5 [Gardnerella vaginalis 5-1]
 gi|297532979|gb|EFH71863.1| putative translation factor SUA5 [Gardnerella vaginalis 5-1]
          Length = 210

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 17/209 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + ++ G  I +PT+TVYG+A D  N  A+ ++YE+K+RP    L   +S++  ++K  
Sbjct: 2   AAQIINEGGVIVVPTDTVYGVACDPFNEAAVAKIYELKRRPRTKALQILMSEVGDLEKLG 61

Query: 75  SVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLST-------------ANLKTACFRVP 120
              P  L +  K F PG  + +      +    L+T                 T   RVP
Sbjct: 62  LYLPSPLDILGKKFLPGGYSPIARAKKDSVASNLATLCKTNETDAQNDAKTQATQGVRVP 121

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  I     PLA  SANRSG  S  +V+   ++    EIPL ++ G ++  + ST+
Sbjct: 122 DCPELMQILRVTGPLAASSANRSGNESADSVEEAFAA-FGNEIPLYLNAGPTRSHVASTV 180

Query: 181 V--NVQCEKKVRILRPGGLEIETLKRAIS 207
           V  +   +  + ILR G +    ++ A+S
Sbjct: 181 VGADSSDKDGIVILREGVISESEIRNALS 209


>gi|254483308|ref|ZP_05096539.1| putative yrdC domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036403|gb|EEB77079.1| putative yrdC domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 188

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 6/191 (3%)

Query: 4   MSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           M  T S+  L  A   L     +A PTE V+GL+ D  +  A+ RL  IK R     LI 
Sbjct: 1   MPFTPSSLRLSAAVAALRREGVVACPTEAVWGLSCDPDSEQAVSRLLAIKGRSVDKGLIL 60

Query: 63  HVSDISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             + +  +    A +           WPGP T ++       + P      +T   RV  
Sbjct: 61  VAASVEQLGFLLADLSQAQKQQLSASWPGPNTWLVPHQ--QRVQPWVHGRFETVAVRVSQ 118

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L E +G PL   SAN +G         +L       +  ++ G +      STI
Sbjct: 119 HPVVRSLCEAWGGPLVSTSANPAGAQPPRAGFQVLR-YFGGSLDGMLPGQVGDAQTPSTI 177

Query: 181 VNVQCEKKVRI 191
            ++   + VR 
Sbjct: 178 RDLASGELVRA 188


>gi|242011385|ref|XP_002426431.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212510536|gb|EEB13693.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 244

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 9/198 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+SI + +A   A   L  G  IAIPT+T+YG+A  ++N   +++LYEIKKR    PL  
Sbjct: 18  IISILEVSAASTAANLLFEGKVIAIPTDTIYGIAASTQNNYGLKKLYEIKKRDLNKPLSI 77

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            VSD S +K       L+  L +   PGP+T+VL       ++     N      R+P  
Sbjct: 78  CVSDTSEIKLWGETSHLNERLLEDLLPGPVTIVLKRKG--LLNSFVNPNTDLIGIRIPNT 135

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLE 177
            F + L      P+A+ SAN S + S   +   +   +  ++  I DGG+          
Sbjct: 136 NFVQALSRLCTVPIALTSANISFEQSPIEINDFIH--LWPKLDAIFDGGVISNSPLQRAG 193

Query: 178 STIVNVQCEKKVRILRPG 195
           ST+V++       I+R G
Sbjct: 194 STVVDLSEPGHYNIIREG 211


>gi|262273073|ref|ZP_06050890.1| YrdC family protein [Grimontia hollisae CIP 101886]
 gi|262222829|gb|EEY74137.1| YrdC family protein [Grimontia hollisae CIP 101886]
          Length = 185

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L  G  IA PTE V+G+  D  +P A++ L ++K R     LI   ++ S ++
Sbjct: 4   VEQCVSALARGEVIAYPTEGVFGVGCDPDSPQAVQALLDVKARDKAKGLILIAAEFSQLE 63

Query: 72  KHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +   D LS  +       WPGP+T V+     T      T    T   RV      + L
Sbjct: 64  GYIDFDSLSDEVKADVLATWPGPVTWVMPAGKKTT--DWVTGQFDTVAVRVSDHPDVRAL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             +YG P+   SAN SG+    +V+ ++   + + +P +++G I      + I + +  K
Sbjct: 122 CLSYGKPITSTSANLSGEAPCRSVEEVVK-QLGERVPNVLEGKIGGRDKPTEIRDARSGK 180

Query: 188 KVR 190
            +R
Sbjct: 181 VLR 183


>gi|261879276|ref|ZP_06005703.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bergensis DSM 17361]
 gi|270334108|gb|EFA44894.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bergensis DSM 17361]
          Length = 188

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 89/192 (46%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++ A E L  G  I  PT+TV+G+  D+ N  A+ ++Y IKKR     LIC V 
Sbjct: 1   MTREEDIKNAVEVLKQGGVILYPTDTVWGIGCDATNTEAVAKVYRIKKRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + ++++  +V  ++  L  +    P T++LD     ++ P   A   +   R+    F
Sbjct: 61  SDARLQRYVRNVPAIAWDLLDVA-DKPTTVILD--GAVNLAPNLIAEDGSIALRITSEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           +K+L   +   L   SAN SG+    N K  +S  +   +  +     ++      S+I+
Sbjct: 118 SKELCYRFQKALVSTSANISGEPPAQNYKD-ISEELLNSVDYVCYSRRNEHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +    +V ++R
Sbjct: 177 KLGPSGEVTVIR 188


>gi|218768797|ref|YP_002343309.1| hypothetical protein NMA2049 [Neisseria meningitidis Z2491]
 gi|121052805|emb|CAM09152.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
 gi|319411036|emb|CBY91436.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 206

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPDNAIAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + L+IDGG       +T+V++    
Sbjct: 133 LGELGEPLLSCTLMLPEDGEPLTDPYEIRECLEHAVDLVIDGGWCGT-EPTTVVDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRQGC 198


>gi|300691879|ref|YP_003752874.1| hypothetical protein RPSI07_2235 [Ralstonia solanacearum PSI07]
 gi|299078939|emb|CBJ51599.1| conserved protein of unknown function, translation factor domain
           (SUA5) [Ralstonia solanacearum PSI07]
          Length = 207

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E + AG  +A+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD     + K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNRQYRVVKTATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G  +  N    + + + +++ L+IDGG +     +
Sbjct: 124 PDHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPG 195
           T++++   +   ++R G
Sbjct: 183 TVIDLTGGEP-ELVRKG 198


>gi|307250416|ref|ZP_07532363.1| hypothetical protein appser4_11970 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857545|gb|EFM89654.1| hypothetical protein appser4_11970 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 205

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 5/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E +  G  I  PT++ Y L        A+ R+  I+K P  +      SD+S
Sbjct: 14  ARLINQAVEIIKNGGVIIYPTDSGYALGCAIGEKHAMDRIVAIRKLPENHNFTLVCSDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   S  L K   P P T +L   +T D+        KT   RVP       L
Sbjct: 74  ELSTYALVTNQSYRLIKNNTPNPYTFILP--ATKDVPRRLMTKRKTIGIRVPDNAIALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S          +    +   +   + LII GG   +G E T V    E 
Sbjct: 132 IAALGEPILSCSLMLPDTEITESDPDEIREHLEHRVDLIIHGGY--LGQEPTTVIDLTED 189

Query: 188 KVRILRPGGLEI 199
             +I+R G  +I
Sbjct: 190 APKIIREGSGDI 201


>gi|76801361|ref|YP_326369.1| hypothetical protein NP1420A [Natronomonas pharaonis DSM 2160]
 gi|76557226|emb|CAI48801.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 194

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 9/197 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   L  G  +  PTETVYGLA D+ +P A++R++E K R    P+   +  ++  
Sbjct: 5   DLTDAVAALRRGDLVVYPTETVYGLAADALDPEAVKRVFEAKGRDRDKPVSMALPSVAAA 64

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++ +         + F PGP+T++L+      +  +  A       RVP     + +  
Sbjct: 65  AEYVTFSDRERAFCEAFLPGPVTVLLER--GDRVPDVLVAGRDRVGLRVPAHDIARDLAR 122

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SG  S       + ++I +   +++DGG +  G EST+V++  +  VR
Sbjct: 123 RVGPITATSANVSGNPSARR-PEAVDATIRER-AVVVDGGETP-GTESTVVDIAADDIVR 179

Query: 191 ILRPGGLEIETLKRAIS 207
                G + + +   ++
Sbjct: 180 ----RGAQADDIDAWLT 192


>gi|300721401|ref|YP_003710672.1| putative RNA-binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|297627889|emb|CBJ88435.1| putative RNA-binding protein with unique protein fold, with
           YrdC/RibB domain [Xenorhabdus nematophila ATCC 19061]
          Length = 189

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 74/191 (38%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS   S A       L  G  IA PTE V+GL  D  +  A++ L  +K RP    LI  
Sbjct: 1   MSNEISPAFDSIVTALKEGKVIAYPTEAVFGLGCDPDSENAVQELLALKNRPWEKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAK---LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +   +  +     LS    +    FWPGP+T V+     T      T    T   RV 
Sbjct: 61  ADNYERLCSYIDDVQLSDEQKETIFSFWPGPVTWVIPAKKIT--PKWLTGKFSTLAVRVT 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K+L   YG PL   SAN SG     +V+ +        IP ++ G +      S 
Sbjct: 119 DHPLVKQLCSLYGKPLVSTSANLSGLEPCRSVEEV-RLQFGNRIP-VLSGEVGGRKNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    K  R
Sbjct: 177 IRDALTGKLYR 187


>gi|134046516|ref|YP_001098001.1| translation factor SUA5 [Methanococcus maripaludis C5]
 gi|132664141|gb|ABO35787.1| translation factor SUA5 [Methanococcus maripaludis C5]
          Length = 205

 Score =  158 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 14/213 (6%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+   I++SN       +  A + +  G  I   T+T+YGL+ ++ +  AI R+Y IK+R
Sbjct: 1   MKTFEISESNLKNCNEEIETAKKMILGGKIILCGTDTLYGLSTNALDKKAIERIYSIKER 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
               P+   + +   ++ +  V   +  + + F PGP+T++L      DI P        
Sbjct: 61  DPNKPISISLGEKKQIENYVYVGETAKKIIEKFMPGPITVIL---KKKDIIPDILGKDD- 116

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              R+P     + I     PL   SAN SG+ +  +++ +  S I +++ LIID G SK 
Sbjct: 117 VGVRIPDNDVIRKI--AIVPLTTTSANISGKTAPISLEEV-DSVIKEKVDLIIDTGPSKY 173

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            ++STIV V    K+ ++R G +  E + +++ 
Sbjct: 174 KVQSTIVKVIG-GKIELIREGKIPFEEILKSVK 205


>gi|161830974|ref|YP_001595974.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331]
 gi|212277673|sp|A9N9G8|RIMN_COXBR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|161762841|gb|ABX78483.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331]
          Length = 186

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 79/185 (42%), Gaps = 5/185 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++  A + L  G  IA PTE VYGL  D  N  A+ +L  IKKR      I   S+  
Sbjct: 5   TQSINDAVKCLRQGGVIAYPTEAVYGLGCDPFNHDAVAQLLTIKKRSIKKGFILIASEWK 64

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126
            V+     +DP +L      WPGP T      ++ +     T    T   RV      K 
Sbjct: 65  QVEPLTEPIDPKALARVFDTWPGPFTWTFP--ASKEAPHWITGQHSTIAIRVTAHPLAKL 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L + +  PL   SAN+ G+  I +VK IL      +I   ++G +      + I +    
Sbjct: 123 LCQRFAGPLISSSANQEGEPPIRDVK-ILRLVFGNKIDKTLEGPLGPTHRPTPIRDAITG 181

Query: 187 KKVRI 191
           + +R+
Sbjct: 182 EILRL 186


>gi|150399931|ref|YP_001323698.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB]
 gi|150012634|gb|ABR55086.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus vannielii SB]
          Length = 205

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 103/212 (48%), Gaps = 14/212 (6%)

Query: 1   MQIMSITDSN------ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M    I++ N       +    + +  G  I   T+T+YGL+ ++ +  AI ++Y+IKKR
Sbjct: 1   MITFKISEDNLNKFEKEIEIVKKVVLEGGVILCGTDTLYGLSTNALDENAIEKIYKIKKR 60

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
               P+   + +   V+K+  VD  +  L   F PGP+T++L      DI P        
Sbjct: 61  DPNKPISISLGEKYQVEKYVYVDDTARKLIDKFMPGPITIIL---KKKDILPDILGKND- 116

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              R+P     + I     PL   SAN SG++S   ++ +    + +++ LIID G  K 
Sbjct: 117 VGVRIPDNDVIRKI--SVVPLTTTSANISGEVSPIALEEV-DPKVKEKVDLIIDSGTCKH 173

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            ++STI+ V  + K+ ++R G +  E + +A+
Sbjct: 174 RMQSTIIKVI-DGKIELIREGKIPFEDILKAL 204


>gi|291614092|ref|YP_003524249.1| Sua5/YciO/YrdC/YwlC family protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584204|gb|ADE11862.1| Sua5/YciO/YrdC/YwlC family protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 209

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 7/200 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  +I   N     +++A E L  G  I  PT++ Y L     +  A+ R+ +I+     
Sbjct: 3   QFFTIHPENPQPRLIKQAAEMLRNGAVIVYPTDSGYALGCHLDDKDAVTRIRQIRGLDDK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           + L     D+S +  +A VD     L K   PG  T +L+         L      T   
Sbjct: 63  HFLTLMCRDLSELSHYARVDNAQFRLLKNNTPGSYTFILEATREVP-RRLQHPKRSTVGL 121

Query: 118 RVPCGFTKKLIETYGHPLAIPS-ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       +        + S      +        ++   + + + L+I+GG   IG 
Sbjct: 122 RIPDHPIALALLEELGEPLLSSTLILPDEEQPLTDVDVIREQLERLVELVIEGGTVGIG- 180

Query: 177 ESTIVNVQCEKKVRILRPGG 196
            +T++++     V + R  G
Sbjct: 181 PTTVIDLTDATPVLVRRGIG 200


>gi|307824289|ref|ZP_07654515.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacter tundripaludum
           SV96]
 gi|307734669|gb|EFO05520.1| Sua5/YciO/YrdC/YwlC family protein [Methylobacter tundripaludum
           SV96]
          Length = 207

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 4/185 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A + +  G  I  PT++ Y +A    +  A+ ++  I++    +       D++ V 
Sbjct: 17  IHRAVDIIRKGGVIVYPTDSSYAIACQIGDKQALDKIRRIRQLDDKHNFTLVCKDLTQVS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ET 130
               +   +  L K   PG  T +L+         L     KT   RVP     +L+ + 
Sbjct: 77  MFTKISNDAYRLIKALTPGAFTFILEATREVP-RRLQHPKKKTVGIRVPDHPVAQLLVQE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   +    G+       + + + +  E+ LIID GI +    +TI+       V 
Sbjct: 136 LGEPLFSSTLMLPGEDEALTDPYEIRNKLEHELDLIIDAGIIEFEQ-TTIIEFSSSG-VE 193

Query: 191 ILRPG 195
           I+R G
Sbjct: 194 IIRQG 198


>gi|238783201|ref|ZP_04627227.1| Ribosomal modification protein RimN [Yersinia bercovieri ATCC
           43970]
 gi|238715997|gb|EEQ07983.1| Ribosomal modification protein RimN [Yersinia bercovieri ATCC
           43970]
          Length = 188

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S+ L      L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++  
Sbjct: 5   SDVLADVLRALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYE 64

Query: 69  MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +        L        WPG +T V+   + T      T +  +   RV      
Sbjct: 65  QLKPYIDDSTLSDLQRETIFSCWPGAVTWVIPARAET--PRWLTGSFDSLAVRVSDHPLV 122

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L   YG PL   SAN SG+      + +        +P ++ G +      S I +  
Sbjct: 123 QQLCLQYGKPLVSTSANLSGREPCRTDEEV-RIQFGPSLP-VLFGKVGGRLNPSEIRDAI 180

Query: 185 CEKKVR 190
             K+ R
Sbjct: 181 TGKQFR 186


>gi|323345671|ref|ZP_08085894.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oralis ATCC 33269]
 gi|323093785|gb|EFZ36363.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oralis ATCC 33269]
          Length = 189

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T +  ++ A E +  G  I  PT+TV+G+  D+ N  A+ ++Y IK+R     LIC V 
Sbjct: 1   MTQAEDIKNAVEIMKKGGVILYPTDTVWGIGCDATNAEAVAKVYRIKQRDDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
           SD+ M +   +V  ++  + +L    P T++LD     ++ P   A   +   R+    F
Sbjct: 61  SDVRMQRYVRNVPNVAWDIMELAT-KPTTVILD--DAVNLAPNLIAEDGSIAMRITKEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           + +L   +  PL   SAN SGQ + +N +  +S  +   +  +      +      S+I+
Sbjct: 118 SHELCYRFQKPLVSTSANISGQPAASNYRD-ISQELLDAVDYVCWSRRQEHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +    +V I+R
Sbjct: 177 KLNKNGEVSIIR 188


>gi|15791118|ref|NP_280942.1| hypothetical protein VNG2312C [Halobacterium sp. NRC-1]
 gi|169236871|ref|YP_001690071.1| hypothetical protein OE4244F [Halobacterium salinarum R1]
 gi|10581723|gb|AAG20422.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727937|emb|CAP14725.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 198

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 3/185 (1%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
             G  +  PTETVYGLA D+ +P AI   +E K+RP   PL     D+    +H +V   
Sbjct: 15  REGGLVVFPTETVYGLAADALDPDAIEAAFEAKRRPREKPLSFAFPDVEAAVEHVAVGET 74

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
                  F PGP+T+V +   +  +  + T        RVP       +     PL   S
Sbjct: 75  ERAFMAEFLPGPVTVVCEKRDS--VPDVLTGGRDRVGVRVPDSEVAVALLERVAPLTATS 132

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN SG+ S+TN    L  +    +  ++D G S  G  ST+V+V   + +R    G    
Sbjct: 133 ANVSGEPSVTN-PAALDPAFRARVDAVVDAGESPGGTGSTVVDVARGEILRAGAVGDAVR 191

Query: 200 ETLKR 204
           E L  
Sbjct: 192 EWLAE 196


>gi|83748250|ref|ZP_00945276.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia solanacearum UW551]
 gi|207743518|ref|YP_002259910.1| rna-binding protein, yrdc [Ralstonia solanacearum IPO1609]
 gi|83725091|gb|EAP72243.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia solanacearum UW551]
 gi|206594916|emb|CAQ61843.1| rna-binding protein, yrdc [Ralstonia solanacearum IPO1609]
          Length = 207

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E + AG  +A+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD     + K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G  +  N    + + + +++ L+IDGG +     +
Sbjct: 124 PEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPG 195
           T++++   +   ++R G
Sbjct: 183 TVIDLTGGEP-ELVREG 198


>gi|153876037|ref|ZP_02003559.1| Sua5/YciO/YrdC/YwlC family protein [Beggiatoa sp. PS]
 gi|152067499|gb|EDN66441.1| Sua5/YciO/YrdC/YwlC family protein [Beggiatoa sp. PS]
          Length = 184

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 9/184 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A  +L  G  IA PTE VYGL  D  N  A+  L  +K+R     LI   +D S + 
Sbjct: 6   LKQATRYLKTGGIIAYPTEAVYGLGCDPLNEKAVTCLLALKQRAWQKGLILIAADYSQLS 65

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +DPL+  L +     WPGP+T ++   + +++             RV      K L
Sbjct: 66  PF--LDPLTAILEEQIFATWPGPVTWLIP--AKSNVPQWLRGKSTKLAVRVTAHPIAKAL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            + +  PL   SAN S Q  +   + +   +  + I  I+ G I +    S I +     
Sbjct: 122 CQYWRGPLVSTSANISHQPPVRTAQKV-RRTFAQRIDYIVPGPIGERQRPSEIRDALTNT 180

Query: 188 KVRI 191
            +R 
Sbjct: 181 VLRF 184


>gi|169634119|ref|YP_001707855.1| hypothetical protein ABSDF2646 [Acinetobacter baumannii SDF]
 gi|169152911|emb|CAP01952.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 205

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S
Sbjct: 13  QRLIEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   S IV++  E 
Sbjct: 132 LKELGGPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTLTTTS-IVDLSGEH 190

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  ++   +
Sbjct: 191 P-EIIRHGVGDVSAFE 205


>gi|156937167|ref|YP_001434963.1| translation factor SUA5 [Ignicoccus hospitalis KIN4/I]
 gi|156566151|gb|ABU81556.1| translation factor SUA5 [Ignicoccus hospitalis KIN4/I]
          Length = 202

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 17/211 (8%)

Query: 1   MQIMSITDSNALRKAC----EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+++       +R+A     E L++G  + IPTETVYG+   +       ++YE K+RP 
Sbjct: 1   MRVLRPRSEEDVRRALIEAKEVLESGGLVIIPTETVYGI---ASKLEFAEKIYEAKRRPR 57

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             PL      +   ++    D  +  LAK FWPGPLT+V+   +   +    TA      
Sbjct: 58  DKPLPVQTP-LGRHREVGEFDEAAEALAKAFWPGPLTIVV--KAKPWLPEAVTAGTGKVG 114

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            RVP       +     PLA+ SAN SG  S  + + +   +      L+ID G  + G 
Sbjct: 115 VRVPAHPFALKLLELVGPLAVTSANLSGGKSPKSAEEVTVEA-----DLLIDMGPVE-GT 168

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            ST+V V+  KKV++LR G +  E +++ +S
Sbjct: 169 PSTVVEVEG-KKVKVLRRGPISEEEIQKVLS 198


>gi|62185126|ref|YP_219911.1| hypothetical protein CAB498 [Chlamydophila abortus S26/3]
 gi|62148193|emb|CAH63950.1| hypothetical protein CAB498 [Chlamydophila abortus S26/3]
          Length = 295

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 17/216 (7%)

Query: 3   IMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            MS TD +  L++A ++LD G  +A PT+TVYGL V    P A  ++Y +K R     L+
Sbjct: 7   FMSDTDPDVFLQQAADYLDQGKIVAFPTDTVYGLGVALNYPNAEEKIYALKHRDRGKSLV 66

Query: 62  CHVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +V+ I  ++K    ++   +L L++ F PGPLTL++D       H     + +   FR+
Sbjct: 67  VYVNTIEDMEKFSGCTLSTRALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRI 119

Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                  KLI+  G PL   SAN S          +       +  + +  G    GLES
Sbjct: 120 LSIPIVNKLIDLAG-PLLGTSANISNFPPAITSNEVTEDF--SQEDICVIPGCCSYGLES 176

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
           T+V       +++ R G +  + ++  +  ++E C+
Sbjct: 177 TVV---SADPLKVYREGMVPRQVIEDVVGEKVETCL 209


>gi|307566301|ref|ZP_07628743.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella amnii CRIS 21A-A]
 gi|307344995|gb|EFN90390.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella amnii CRIS 21A-A]
          Length = 189

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +   + ++KA E +  G  I  PT+TV+G+  D+ N  A+ ++Y++K+R     LIC V 
Sbjct: 1   MKREDDIKKAIEVMRQGGIILYPTDTVWGIGCDATNADAVAKVYKLKRRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
               ++++  +V  ++  L +     P TL+LD     ++     A   +   R+    F
Sbjct: 61  SEDRLQRYVRNVPQVAWQLLEAVT-KPTTLILDN--AVNLASNLIAEDGSIGMRITNEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           +K+L   +   +   SAN SG+ +  N + I    +   +  +      +      S+I+
Sbjct: 118 SKELCYRFQKAIVSTSANISGEPAAQNYRDISQEVLNG-VDYVCFARRQEHEPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +  +  V I+R
Sbjct: 177 KLSKDGTVNIIR 188


>gi|110807131|ref|YP_690651.1| putative ribosome maturation factor [Shigella flexneri 5 str. 8401]
 gi|110616679|gb|ABF05346.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281602651|gb|ADA75635.1| putative ribosome maturation factor [Shigella flexneri 2002017]
          Length = 205

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 23  DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 83  LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198

Query: 186 EKKVR 190
            +  R
Sbjct: 199 GELFR 203


>gi|207722877|ref|YP_002253311.1| rna-binding protein, yrdc [Ralstonia solanacearum MolK2]
 gi|206588061|emb|CAQ18641.1| rna-binding protein, yrdc [Ralstonia solanacearum MolK2]
          Length = 207

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E + AG  +A+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD     + K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G  +  N    + + + +++ L+IDGG +     +
Sbjct: 124 PEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPG 195
           T++++   +   ++R G
Sbjct: 183 TVIDLTGGEP-ELVREG 198


>gi|270264336|ref|ZP_06192602.1| putative ribosome maturation factor [Serratia odorifera 4Rx13]
 gi|270041472|gb|EFA14570.1| putative ribosome maturation factor [Serratia odorifera 4Rx13]
          Length = 189

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L    + L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   +D S
Sbjct: 6   TSILTPIIDALRNQQVIAYPTEAVFGLGCDPDSGQAVNALLALKQRPWEKGLILIAADYS 65

Query: 69  MVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +  +     LS          WPGP+T V+     T    L T    +   RV      
Sbjct: 66  QLTSYIDDGALSEQQRAAMFATWPGPVTWVIPARPET--PRLLTGRFNSLAVRVSDHPLV 123

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L   +G PL   SAN SGQ    +   ++        P ++ G +      S I +V 
Sbjct: 124 QQLCRQFGKPLVSTSANLSGQEPCRSADEVM-QQFGSAFP-VLAGSVGGRLNPSEIRDVL 181

Query: 185 CEKKVR 190
             + +R
Sbjct: 182 TGELIR 187


>gi|145300980|ref|YP_001143821.1| Sua5/YciO/YrdC family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|212277666|sp|A4ST51|RIMN_AERS4 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|142853752|gb|ABO92073.1| Sua5/YciO/YrdC family protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 186

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 7/187 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S    +A   L     IA  TE V+GL  D  +  A++RL  IK+RP    LI   +D+ 
Sbjct: 2   STEFEQAVAALHGEGVIAYATEAVFGLGCDPDSELAVQRLLAIKQRPVEKGLILIAADLV 61

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            ++ +  +  LS   L   +  WPGP T ++   +TT      T    T   RV      
Sbjct: 62  QLQDYIDLSQLSGEQLARVEASWPGPFTWIMPARATT--PTWLTGQFDTLAVRVTAHPQV 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +G PL   SAN +G+     V   +   +  ++  I+ G +      S I + +
Sbjct: 120 QALCRAFGKPLVSTSANLTGEEPARRVTD-IGELLASKLAYILPGEVGGQANPSEIKDAR 178

Query: 185 CEKKVRI 191
               +R 
Sbjct: 179 TGAVIRP 185


>gi|311277763|ref|YP_003939994.1| SUA5/yciO/yrdC domain-containing protein [Enterobacter cloacae
           SCF1]
 gi|308746958|gb|ADO46710.1| SUA5/yciO/yrdC domain protein [Enterobacter cloacae SCF1]
          Length = 190

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A   L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   +   
Sbjct: 7   TESIARAVAALNNKNVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFE 66

Query: 69  MVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            +K +       P         WPGP+T V      T      T    +   RV      
Sbjct: 67  QLKPYIDDSVLTPAQREAVFARWPGPVTFVFPAREQT--PRWLTGKFDSLAVRVTDHPLV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L E YG PL   SAN +G         +L +   +  P+++ G        S I +  
Sbjct: 125 VALCEAYGKPLVSTSANLTGLPPCRTTAEVL-AQFGEHFPVVV-GETGGRLNPSEIRDAL 182

Query: 185 CEKKVR 190
             +  R
Sbjct: 183 TGELFR 188


>gi|238060788|ref|ZP_04605497.1| translation factor SUA5 [Micromonospora sp. ATCC 39149]
 gi|237882599|gb|EEP71427.1| translation factor SUA5 [Micromonospora sp. ATCC 39149]
          Length = 221

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 6/208 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A E +  G  + +PT+TVYG+  D+  P A++ L + K      P    +    
Sbjct: 19  DRGIAAAIEAVKNGELVVLPTDTVYGIGADAFTPYAVKALSDAKGGTRQAP-PVLIGSRH 77

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +       P  +  L + FWPG LT+V++   +  +      +  T   R+P       
Sbjct: 78  TLDGLVFTLPRSARDLVEAFWPGALTIVVEHSPS--LSWDLGDDSGTVAVRMPLHPVALE 135

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN+ GQ +           +   +   ++ G     + STIV++  E 
Sbjct: 136 VLRETGPMAVASANKVGQPAAVTA-EAAREQLGYTVRAYLEAGPCPDPVPSTIVDLTGEV 194

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVD 215
             R+LR G + +E L+  +   +E  V 
Sbjct: 195 P-RLLRAGAIPVEKLRDVVPDIVESQVG 221


>gi|320666395|gb|EFX33378.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O157:H7 str. LSU-61]
          Length = 190

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G   +    S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGERLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|239999590|ref|ZP_04719514.1| hypothetical protein Ngon3_08918 [Neisseria gonorrhoeae 35/02]
 gi|240014764|ref|ZP_04721677.1| hypothetical protein NgonD_08995 [Neisseria gonorrhoeae DGI18]
 gi|240017213|ref|ZP_04723753.1| hypothetical protein NgonFA_08608 [Neisseria gonorrhoeae FA6140]
 gi|240113362|ref|ZP_04727852.1| hypothetical protein NgonM_07292 [Neisseria gonorrhoeae MS11]
 gi|240116290|ref|ZP_04730352.1| hypothetical protein NgonPID1_08647 [Neisseria gonorrhoeae PID18]
 gi|240118578|ref|ZP_04732640.1| hypothetical protein NgonPID_08974 [Neisseria gonorrhoeae PID1]
 gi|240121287|ref|ZP_04734249.1| hypothetical protein NgonPI_05870 [Neisseria gonorrhoeae PID24-1]
 gi|240124121|ref|ZP_04737077.1| hypothetical protein NgonP_09310 [Neisseria gonorrhoeae PID332]
 gi|240126263|ref|ZP_04739149.1| hypothetical protein NgonSK_08652 [Neisseria gonorrhoeae SK-92-679]
 gi|240128790|ref|ZP_04741451.1| hypothetical protein NgonS_09224 [Neisseria gonorrhoeae SK-93-1035]
 gi|260439893|ref|ZP_05793709.1| hypothetical protein NgonDG_02184 [Neisseria gonorrhoeae DGI2]
          Length = 206

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDAPARAL-HPKRKTIGLRIPDNAVAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 133 LEELGGPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 191

Query: 188 KVRILRPG 195
           ++  +R G
Sbjct: 192 EL--VRRG 197


>gi|326673503|ref|XP_693825.3| PREDICTED: hypothetical protein LOC565454 [Danio rerio]
          Length = 880

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 9/206 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +++ L K  + L+      IPT+TVY LA   +NP+AI ++Y IK RPA  P+   +S +
Sbjct: 667 ETSGLLKIAKLLENNGVCGIPTDTVYALAASCKNPSAIEKIYTIKDRPAEKPICICISSV 726

Query: 68  SMV-KKHASVDPLSLHLAKLFWPGPLTLVLDLLS---TTDIHP--LSTANLKTACFRVPC 121
             +        PL     +  +PG ++ ++          + P        ++   RVP 
Sbjct: 727 EQLVAAKPPFSPLLWEFMRNVYPGGISCIVPKGDWLLKLGVGPAYDRVGTRESIMIRVPD 786

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                 +  +  PLAI SAN SG+   T+   +++  +  +I  ++  G S   + ST+V
Sbjct: 787 HTATAHLCEFTGPLAITSANPSGEADSTHHDMVIN-RLGHKIEGVLCDGESNEVVASTVV 845

Query: 182 NVQ--CEKKVRILRPGGLEIETLKRA 205
           N     E  + ILR G +    +++ 
Sbjct: 846 NCLKIDEGAISILREGCVPALKVRQI 871


>gi|194435076|ref|ZP_03067314.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012]
 gi|194416683|gb|EDX32814.1| Sua5/YciO/YrdC/YwlC family protein [Shigella dysenteriae 1012]
 gi|320182719|gb|EFW57605.1| putative ribosome maturation factor [Shigella boydii ATCC 9905]
 gi|332085429|gb|EGI90595.1| ribosome maturation factor [Shigella boydii 5216-82]
 gi|332086276|gb|EGI91432.1| ribosome maturation factor [Shigella dysenteriae 155-74]
          Length = 190

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    STT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPSTT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|150025693|ref|YP_001296519.1| translation factor [Flavobacterium psychrophilum JIP02/86]
 gi|149772234|emb|CAL43710.1| Putative translation factor [Flavobacterium psychrophilum JIP02/86]
          Length = 188

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 7/192 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M I     +  A E +  G  I  PT+TV+G+  D+ NP A+ ++Y++K+R     +IC 
Sbjct: 1   MDINQE--IHNAYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMICL 58

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122
           ++   M+       P            P TL+LD     +I P   A  KT   R V   
Sbjct: 59  MNGEKMMYNVFKDIPEVAWQIMDVSEKPTTLILDNP--RNIAPNLIATDKTLGIRIVKEP 116

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV 181
           F  KL+E    PL   SAN SGQ +    K I    +   +  +++    KI G  STI+
Sbjct: 117 FCFKLLERMKKPLVSTSANISGQPTPIAFKDISPEILKG-VDYVVNLHHEKIGGKPSTII 175

Query: 182 NVQCEKKVRILR 193
            +  + +V+++R
Sbjct: 176 KLTNDSQVKVIR 187


>gi|227115514|ref|ZP_03829170.1| putative DNA topoisomerase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 189

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 9/192 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  ++D   +    E L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI 
Sbjct: 1   MSDVSDERMIPVLRE-LHDEQVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLIL 59

Query: 63  HVSDISMVKKHASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             +D S +  +     LS     +    WPGP+T VL    TT      T    +   RV
Sbjct: 60  IAADFSQLAPYIDDSALSDEQKAVMFSTWPGPVTWVLPAKRTTPQ--WLTGQFSSLAVRV 117

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 K+L   YG PL   SAN SG+      + + S     + P ++ G +      S
Sbjct: 118 SDHPLVKELCLRYGKPLVSTSANLSGKPPCRTAQEV-SLQFGDDFP-VLVGDVGGRMNPS 175

Query: 179 TIVNVQCEKKVR 190
            I +V   + +R
Sbjct: 176 EIRDVLTGELIR 187


>gi|170769585|ref|ZP_02904038.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627]
 gi|170121642|gb|EDS90573.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia albertii TW07627]
          Length = 190

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL ++K+RP    LI   ++   
Sbjct: 8   DAIASAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLDLKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    STT      T    +   RV       
Sbjct: 68  LKPYIDDSMLTKAQRETIFSRWPGPVTFVFPAPSTT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V+ +  +    E P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSSSANLSGLPPCRTVEEV-RAQFGVEFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|295086554|emb|CBK68077.1| translation factor SUA5 [Bacteroides xylanisolvens XB1A]
          Length = 202

 Score =  157 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++  V     
Sbjct: 18  EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 77

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++ P   A   +   RV    F+++L
Sbjct: 78  VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFSRRL 134

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I+      +     S+I+ ++ 
Sbjct: 135 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGFRQDDMNKPKPSSIIKLEK 193

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 194 GGVIKIIRE 202


>gi|301063995|ref|ZP_07204460.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
 gi|300441906|gb|EFK06206.1| Sua5/YciO/YrdC/YwlC family protein [delta proteobacterium NaphS2]
          Length = 215

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 6/198 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+ A   L +G  +A PTE+ YGLA D+ N  AIRRL++IK+R    P++  + D+  +K
Sbjct: 19  LKDAAAILKSGGLVAYPTESYYGLAADAANEAAIRRLFQIKRRKPGEPILLLIPDVGSLK 78

Query: 72  K-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  A V   +  L   FWPG LT+V +  +  D+  L TA       R+        L++
Sbjct: 79  RCVAHVPEAAKRLMDAFWPGGLTIVFE--AQKDLSMLLTAGTSKIGIRLSSHPLATALVK 136

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   SAN SG+      + + ++ + K +  I+DGG +     ST+++V     +
Sbjct: 137 AMGSPITGTSANVSGEPPCRTPRGVFNA-LGKGVDKILDGGETPGEKPSTVLDVTS-YPL 194

Query: 190 RILRPGGLEIETLKRAIS 207
            ILR G +  + L     
Sbjct: 195 TILREGIISKKMLAPFCG 212


>gi|75908905|ref|YP_323201.1| translation factor SUA5 [Anabaena variabilis ATCC 29413]
 gi|75702630|gb|ABA22306.1| translation factor SUA5 [Anabaena variabilis ATCC 29413]
          Length = 219

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 22/222 (9%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+++   N     + +    L +G  +  PT+TVY +  D    +A+ R+ +IK+    
Sbjct: 3   KIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLAND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTAC 116
            PL      +S V  +A V   +  + K   PG  T +L   +T  +  L  +   KT  
Sbjct: 63  KPLTFLCPSLSNVATYAFVSDTAYRIMKRLIPGTYTFLLP--ATKLVPKLVQSPKRKTTG 120

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQ-----------ISITNVKHILSSSICKEIP 164
            RVP       L+E  G+P+   SA+                SIT++   L   + K + 
Sbjct: 121 IRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIVSESITSMAE-LFDRVDKLVD 179

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           +I+D G       STIV++  ++ +   +  GL  E +K  +
Sbjct: 180 VIVDTGQEPTYDVSTIVDLTGDEPMITRQ--GLGWEAVKAWV 219


>gi|309781239|ref|ZP_07675976.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA]
 gi|308920060|gb|EFP65720.1| Sua5/YciO/YrdC/YwlC family protein [Ralstonia sp. 5_7_47FAA]
          Length = 207

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 5/197 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E +  G  +A+PT++ Y LA    + +A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAVEIIRGGGLVALPTDSCYALACHLDDKSAVERLRRVRSIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD     + K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVLKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G     N    +   + K++ L+IDGG +     +
Sbjct: 124 PEHAIPLALMAELGEPLLSATLQLPGDDEPLNEAETIRDRLEKQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPG 195
           T++++   +   ++R G
Sbjct: 183 TVIDLTGGEP-ELVRQG 198


>gi|300921909|ref|ZP_07138064.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1]
 gi|301325152|ref|ZP_07218684.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1]
 gi|300421710|gb|EFK05021.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 182-1]
 gi|300847984|gb|EFK75744.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 78-1]
          Length = 190

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPITFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|297619997|ref|YP_003708102.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3]
 gi|297378974|gb|ADI37129.1| Sua5/YciO/YrdC/YwlC family protein [Methanococcus voltae A3]
          Length = 209

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 8/208 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I+       L  A ++L  G     PT+T+YG+   + +   + R+Y+IK R    P 
Sbjct: 1   MKIIRKGVEITLNDAKKYLKNGEIALCPTDTIYGICGYALDKNVVDRIYKIKNRDESKPF 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              +   S ++K+A V+ ++  L   F PGP+TL+L    +  I             R+P
Sbjct: 61  SISLQKKSDIQKYAKVNNVAKKLINKFLPGPITLILPKKES--IPDYIC--KDYVGIRIP 116

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 ++E    P+   SAN SG+ S  ++   +   I   + +IID G  +    STI
Sbjct: 117 DSKI--ILELSEIPITSTSANVSGRPSSYSISK-MDKEILNSVDIIIDDGDCEYKKPSTI 173

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV 208
           V +  +  + ++R G +  + + + +++
Sbjct: 174 VKII-DNDIELIREGSISFDNILKELNL 200


>gi|158338241|ref|YP_001519418.1| Sua5/YciO/YrdC/YwlC family protein [Acaryochloris marina MBIC11017]
 gi|158308482|gb|ABW30099.1| Sua5/YciO/YrdC/YwlC family protein [Acaryochloris marina MBIC11017]
          Length = 220

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 18/212 (8%)

Query: 2   QIMSITDSNALRKACEFLD----AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           QI ++   +  ++  + +      G  +  PT+TVY +  D     A++R+ +IK+    
Sbjct: 3   QIYTVHPQDPQQRTIDAIRADLLNGAVMLYPTDTVYAIGCDINAKAAVQRVRQIKQMSND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTAC 116
            PL    S +S + ++A V   +  + +   PGP T +L   +T  +  L      KT  
Sbjct: 63  KPLTFLCSSLSNIAQYARVSDSAYKIMRKLIPGPYTFLLP--ATKLVPKLVQNPKRKTTG 120

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQI---------SITNVKHILSSSICKEIPLI 166
            RVP       L+++   P+   SA+ S Q                  L     K++ LI
Sbjct: 121 IRVPDHPVCLSLLDSLATPIISTSAHFSDQESVHGWSKKQEPLTPVE-LFDHFDKQVDLI 179

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           I+ G       STI+++  ++   +    G +
Sbjct: 180 IENGQDLSTKVSTILDLCQDQPAVVREGLGWD 211


>gi|169351563|ref|ZP_02868501.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552]
 gi|169291785|gb|EDS73918.1| hypothetical protein CLOSPI_02343 [Clostridium spiroforme DSM 1552]
          Length = 200

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 7/202 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + + NA+ +  + +     +A PTETV+GL +   +  A+  LYE+K R     +   ++
Sbjct: 5   LVEKNAIEEVAKLVSDNQVVAFPTETVFGLGIKFGSYEALNSLYELKHRDRHKAISMMIN 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +   ++K+A V+  +  + K F PG +T++L       I    TA+L T   R+P   F 
Sbjct: 65  NPKDIEKYAYVNDQARKIIKSFMPGMVTIILKKRE--FIDDYFTASLDTIGIRIPDDKFV 122

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L+E  G P+ + SAN SG+ ++ + K ++      +IPLI+ G  S     STI+++ 
Sbjct: 123 LSLLEKTG-PMLVTSANLSGEDTLVDDKAVMK-VFSGKIPLIVKGE-SVSKKASTIIDLS 179

Query: 185 CEKKVRILRPGGLEIETLKRAI 206
              KV ILR G +  + +   I
Sbjct: 180 K-GKVEILRVGDISEKQILEVI 200


>gi|260911833|ref|ZP_05918400.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634044|gb|EEX52167.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 189

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++KA E L  G  I  PT+T++G+  D+ N  A+ ++Y+IK+R     +IC V 
Sbjct: 1   MTREEDIKKAVEVLRKGGVILYPTDTIWGIGCDATNAEAVAKVYQIKQRDDSKAMICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGF 123
               ++++  +V  ++  L +L    P TL+LD     ++ P   A   +   RV    F
Sbjct: 61  SAMRMQRYVRNVPNVAWDLVELAT-KPTTLILD--DAVNLAPNLIAEDGSVALRVTTEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           +K+L   +   L   SAN SG+ +  N K  +S  +   +  +      +      S+I+
Sbjct: 118 SKELCYRFQKALVSTSANISGEPAAANYKD-ISEELLNAVDYVCWSRRQEHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +  + +V ++R
Sbjct: 177 KLNKDGEVTVIR 188


>gi|238763697|ref|ZP_04624656.1| Ribosomal modification protein RimN [Yersinia kristensenii ATCC
           33638]
 gi|238697999|gb|EEP90757.1| Ribosomal modification protein RimN [Yersinia kristensenii ATCC
           33638]
          Length = 190

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 8/187 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  L      L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++ 
Sbjct: 6   NNTVLADVLRALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANY 65

Query: 68  SMVKKH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
             +K +   A++           WPGP+T V+     T      T +  +   RV     
Sbjct: 66  EQLKPYLNDAALSDTQREAIFSSWPGPVTWVIPARPET--PRWLTGSFDSLAVRVSDHPL 123

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L   YG PL   SAN SGQ      + +        +P +  G +      S I + 
Sbjct: 124 VQQLCSQYGKPLVSTSANLSGQEPCRTTEEV-RKQFGVSLP-VFTGLVGGRLNPSEIRDA 181

Query: 184 QCEKKVR 190
              K+ R
Sbjct: 182 LTGKQFR 188


>gi|167753477|ref|ZP_02425604.1| hypothetical protein ALIPUT_01751 [Alistipes putredinis DSM 17216]
 gi|167658102|gb|EDS02232.1| hypothetical protein ALIPUT_01751 [Alistipes putredinis DSM 17216]
          Length = 200

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +    L+    +  PT++VY      R+  A+ RL  IK +            + 
Sbjct: 12  EKEIDRVVNLLERDGVVIYPTDSVYAFGCSIRSAKAVERLRRIKGKDLTT-FSVVFDSLG 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +  VD     L K   PGP T +LD  +++ +   +    +T   R+P     + +
Sbjct: 71  QIADYCRVDNAQFRLLKQNLPGPFTFLLD--ASSRMPHKALERRRTIGIRIPDNSIPRAI 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   S     +        ++     +++ L+IDGG+    + +T+V++   +
Sbjct: 129 VERLGAPLLTSSVLDDEETEYMTDPELIHERYGRDVELVIDGGVGDA-VPTTVVDLTGGE 187

Query: 188 KVRILRPG 195
              ILR G
Sbjct: 188 P-EILREG 194


>gi|56480306|ref|NP_709070.2| putative ribosome maturation factor [Shigella flexneri 2a str. 301]
 gi|81722931|sp|Q83JD1|RIMN_SHIFL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|56383857|gb|AAN44777.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 190

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 10/186 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQ 184
            L + YG PL   SAN SG      V  +  +      P++   G ++  L  S I +  
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFPVV--PGETRGRLNPSEIRDAL 182

Query: 185 CEKKVR 190
             +  R
Sbjct: 183 TGELFR 188


>gi|78485574|ref|YP_391499.1| Sua5/YciO/YrdC/YwlC [Thiomicrospira crunogena XCL-2]
 gi|78363860|gb|ABB41825.1| Sua5/YciO/YrdC/YwlC family protein [Thiomicrospira crunogena XCL-2]
          Length = 207

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 4/194 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +  E L+ G  IA PTE+ Y L     N     R+  I++    +       D+S
Sbjct: 17  ERLLLQVVEVLNKGGVIAYPTESGYALGCLLDNKEGADRIRAIRRLDEKHHFTLVCPDLS 76

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
            +  +A V  +     K   PGP T +L          L T   KT   RV P   T  L
Sbjct: 77  HLSAYAKVGNVQFRYLKSHLPGPYTFILPASREVP-RRLQTPKRKTIGLRVTPNVVTNAL 135

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +  PL   S    G+         +  ++   +  ++DGG       +T+++   + 
Sbjct: 136 LSYFDKPLISVSLILPGEDLPMTDGWSIQETLGHALDAVLDGGFCGF-EPTTVIDFTDDV 194

Query: 188 KVRILRPGGLEIET 201
              ++R G  E + 
Sbjct: 195 P-ELIRQGQGEFKE 207


>gi|74313802|ref|YP_312221.1| putative ribosome maturation factor [Shigella sonnei Ss046]
 gi|170683354|ref|YP_001745545.1| putative ribosome maturation factor [Escherichia coli SMS-3-5]
 gi|191169298|ref|ZP_03031047.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A]
 gi|191174443|ref|ZP_03035944.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11]
 gi|193066486|ref|ZP_03047530.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22]
 gi|193071546|ref|ZP_03052455.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019]
 gi|209920748|ref|YP_002294832.1| putative ribosome maturation factor [Escherichia coli SE11]
 gi|218555840|ref|YP_002388753.1| putative ribosome maturation factor [Escherichia coli IAI1]
 gi|218560344|ref|YP_002393257.1| ribosome maturation factor [Escherichia coli S88]
 gi|218696975|ref|YP_002404642.1| putative ribosome maturation factor [Escherichia coli 55989]
 gi|256020641|ref|ZP_05434506.1| putative ribosome maturation factor [Shigella sp. D9]
 gi|260846080|ref|YP_003223858.1| putative ribosome maturation factor [Escherichia coli O103:H2 str.
           12009]
 gi|260857403|ref|YP_003231294.1| putative ribosome maturation factor [Escherichia coli O26:H11 str.
           11368]
 gi|260870026|ref|YP_003236428.1| putative ribosome maturation factor [Escherichia coli O111:H- str.
           11128]
 gi|300822914|ref|ZP_07103050.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7]
 gi|300903531|ref|ZP_07121453.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1]
 gi|300918257|ref|ZP_07134861.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1]
 gi|300935280|ref|ZP_07150291.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1]
 gi|300973962|ref|ZP_07172369.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1]
 gi|301305492|ref|ZP_07211584.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1]
 gi|306816375|ref|ZP_07450513.1| putative ribosome maturation factor [Escherichia coli NC101]
 gi|307315139|ref|ZP_07594722.1| SUA5/yciO/yrdC domain protein [Escherichia coli W]
 gi|309794558|ref|ZP_07688980.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7]
 gi|331659573|ref|ZP_08360511.1| protein YrdC [Escherichia coli TA206]
 gi|331670112|ref|ZP_08370951.1| protein YrdC [Escherichia coli TA271]
 gi|331684925|ref|ZP_08385511.1| protein YrdC [Escherichia coli H299]
 gi|123616010|sp|Q3YWX6|RIMN_SHISS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277679|sp|B1LGN9|RIMN_ECOSM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277720|sp|Q1R650|RIMN_ECOUT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277723|sp|Q0TCH9|RIMN_ECOL5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277725|sp|A7ZSH1|RIMN_ECO24 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277737|sp|A1AGH4|RIMN_ECOK1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288264|sp|B2U2Q0|RIMN_SHIB3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|73857279|gb|AAZ89986.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|170521072|gb|ACB19250.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli SMS-3-5]
 gi|190900653|gb|EDV60453.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli B7A]
 gi|190905251|gb|EDV64889.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli F11]
 gi|192925867|gb|EDV80517.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E22]
 gi|192955134|gb|EDV85628.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E110019]
 gi|209914007|dbj|BAG79081.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353707|emb|CAU99974.1| putative ribosome maturation factor [Escherichia coli 55989]
 gi|218362608|emb|CAR00234.1| putative ribosome maturation factor [Escherichia coli IAI1]
 gi|218367113|emb|CAR04887.1| putative ribosome maturation factor [Escherichia coli S88]
 gi|222034991|emb|CAP77734.1| Uncharacterized protein yrdC [Escherichia coli LF82]
 gi|257756052|dbj|BAI27554.1| predicted ribosome maturation factor [Escherichia coli O26:H11 str.
           11368]
 gi|257761227|dbj|BAI32724.1| predicted ribosome maturation factor [Escherichia coli O103:H2 str.
           12009]
 gi|257766382|dbj|BAI37877.1| predicted ribosome maturation factor [Escherichia coli O111:H- str.
           11128]
 gi|300308972|gb|EFJ63492.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 200-1]
 gi|300404404|gb|EFJ87942.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 84-1]
 gi|300414518|gb|EFJ97828.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 115-1]
 gi|300459483|gb|EFK22976.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 21-1]
 gi|300524680|gb|EFK45749.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 119-7]
 gi|300839187|gb|EFK66947.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 124-1]
 gi|305850771|gb|EFM51228.1| putative ribosome maturation factor [Escherichia coli NC101]
 gi|306905488|gb|EFN36023.1| SUA5/yciO/yrdC domain protein [Escherichia coli W]
 gi|307628317|gb|ADN72621.1| putative ribosome maturation factor [Escherichia coli UM146]
 gi|308121608|gb|EFO58870.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 145-7]
 gi|312947833|gb|ADR28660.1| putative ribosome maturation factor [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315062574|gb|ADT76901.1| predicted ribosome maturation factor [Escherichia coli W]
 gi|315255866|gb|EFU35834.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 85-1]
 gi|315284583|gb|EFU44028.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 110-3]
 gi|315297148|gb|EFU56428.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 16-3]
 gi|320173927|gb|EFW49103.1| putative ribosome maturation factor [Shigella dysenteriae CDC
           74-1112]
 gi|320199470|gb|EFW74060.1| putative ribosome maturation factor [Escherichia coli EC4100B]
 gi|323154120|gb|EFZ40323.1| ribosome maturation factor [Escherichia coli EPECa14]
 gi|323162961|gb|EFZ48796.1| ribosome maturation factor [Escherichia coli E128010]
 gi|323179182|gb|EFZ64756.1| ribosome maturation factor [Escherichia coli 1180]
 gi|323182762|gb|EFZ68163.1| ribosome maturation factor [Escherichia coli 1357]
 gi|323376839|gb|ADX49107.1| SUA5/yciO/yrdC domain protein [Escherichia coli KO11]
 gi|323944297|gb|EGB40373.1| yrdC domain-containing protein [Escherichia coli H120]
 gi|323950196|gb|EGB46078.1| yrdC domain-containing protein [Escherichia coli H252]
 gi|323954595|gb|EGB50378.1| yrdC domain-containing protein [Escherichia coli H263]
 gi|324014959|gb|EGB84178.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 60-1]
 gi|324017405|gb|EGB86624.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 117-3]
 gi|324116328|gb|EGC10248.1| yrdC domain-containing protein [Escherichia coli E1167]
 gi|331052788|gb|EGI24821.1| protein YrdC [Escherichia coli TA206]
 gi|331062174|gb|EGI34094.1| protein YrdC [Escherichia coli TA271]
 gi|331077296|gb|EGI48508.1| protein YrdC [Escherichia coli H299]
          Length = 190

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|121595728|ref|YP_987624.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax sp. JS42]
 gi|120607808|gb|ABM43548.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax sp. JS42]
          Length = 211

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L +G  +A+PT++ Y L     +  A+ ++  I++    + L     D+S
Sbjct: 14  PRLLKQAATLLSSGGILAVPTDSSYALVCRLDDKDAVDQIRRIRQINDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +A VD     L KL  PGP T +LD         +S    KT   RVP     + L
Sbjct: 74  ELANYAHVDNRQYRLLKLATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQML 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           +E +G PL   +   +G+    N    +     K++  I+D G   +   +T++++    
Sbjct: 133 LELHGAPLLATTLIPAGESEPLNDPQEIRERFEKQLDGILDAGGCPL-EPTTVLDLTPMN 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R GG  +  L
Sbjct: 192 TGGDPIVVREGGGSLAKL 209


>gi|293609079|ref|ZP_06691382.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829652|gb|EFF88014.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 205

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S
Sbjct: 13  QRLIAQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ST IV++  E
Sbjct: 132 LQELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTLT--STSIVDLSGE 189

Query: 187 KKVRILRPGGLEIETLK 203
               I+R G  ++   +
Sbjct: 190 HP-EIIRRGVGDVSAFE 205


>gi|282879660|ref|ZP_06288391.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella timonensis CRIS
           5C-B1]
 gi|281306608|gb|EFA98637.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella timonensis CRIS
           5C-B1]
          Length = 189

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 90/192 (46%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +     ++ A E +  G  I  PT+TV+G+  D+ N  A+ ++Y+IKKR     LIC V 
Sbjct: 1   MNQQEDIKNAIEVMKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + ++++  +V  ++  +  +    P T++LD     ++ P   A   +   R+    F
Sbjct: 61  SDARLQRYVRNVPNVAWDILDIAT-KPTTIILD--GAINLAPNLIAEDGSIALRITKEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           + +L   +  PL   SAN SG+ +  N    +S  +   +  +      +      S+I+
Sbjct: 118 SHELCYRFQKPLVSTSANISGEPAAANYND-ISQELLDAVDYVCFSRRQEHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            ++ + +V I+R
Sbjct: 177 KLKEDGEVTIIR 188


>gi|261823196|ref|YP_003261302.1| SUA5/yciO/yrdC domain protein [Pectobacterium wasabiae WPP163]
 gi|261607209|gb|ACX89695.1| SUA5/yciO/yrdC domain protein [Pectobacterium wasabiae WPP163]
          Length = 189

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 8/176 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D S +  +     
Sbjct: 16  LHTEHVIAYPTEAVFGLGCDPDSEVAVNRLLALKQRPWQKGLILIAADFSQLVPYIDDSA 75

Query: 79  LSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134
           LS     +    WPGP+T VL    TT      T    +   RV      K+L + YG P
Sbjct: 76  LSDEQKAVMFSTWPGPVTWVLPAKHTTPQ--WLTGQFSSLAVRVSGHPLVKELCQRYGKP 133

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           L   SAN SGQ      + + S     + P ++ G +      S I +V   + +R
Sbjct: 134 LVSTSANLSGQPPCRTAQEV-SQQFGDDFP-VLVGDVGGRMNPSEIRDVLTGELIR 187


>gi|17545860|ref|NP_519262.1| hypothetical protein RSc1141 [Ralstonia solanacearum GMI1000]
 gi|17428154|emb|CAD14843.1| putative rna-binding protein, yrdc [Ralstonia solanacearum GMI1000]
          Length = 207

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 4/198 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E + AG  IA+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD       K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLEATREVP-RRLSHPSRKTIGLRV 123

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G  +  N    + + + +++ L+IDGG +     +
Sbjct: 124 PDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRALLERQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPGG 196
           T++++   +   + R  G
Sbjct: 183 TVIDLTGGEPELVRRGRG 200


>gi|218702046|ref|YP_002409675.1| putative ribosome maturation factor [Escherichia coli IAI39]
 gi|218372032|emb|CAR19890.1| putative ribosome maturation factor [Escherichia coli IAI39]
          Length = 190

 Score =  157 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +++  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DSIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|16762880|ref|NP_458497.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144367|ref|NP_807709.1| ribosome maturation factor [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213023921|ref|ZP_03338368.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213161454|ref|ZP_03347164.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417232|ref|ZP_03350376.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213428279|ref|ZP_03361029.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582984|ref|ZP_03364810.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213622290|ref|ZP_03375073.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213650875|ref|ZP_03380928.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289824188|ref|ZP_06543783.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|81593190|sp|Q8Z1W6|RIMN_SALTI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|25305392|pir||AF1010 conserved hypothetical protein yrdC [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505187|emb|CAD09183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140005|gb|AAO71569.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 190

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
               + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K 
Sbjct: 11  AAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKP 70

Query: 73  HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +     L+    K     WPGP+T V    +TT      T    +   RV        L 
Sbjct: 71  YIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVALC 128

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             YG PL   SAN SG      V+ +  +    + P +++G        S I +    + 
Sbjct: 129 NAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTGEL 186

Query: 189 VR 190
            R
Sbjct: 187 FR 188


>gi|215488582|ref|YP_002331013.1| putative ribosome maturation factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968392|ref|ZP_07782602.1| ribosome maturation factor [Escherichia coli 2362-75]
 gi|215266654|emb|CAS11093.1| predicted ribosome maturation factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287217|gb|EFR15127.1| ribosome maturation factor [Escherichia coli 2362-75]
 gi|320195374|gb|EFW70001.1| putative ribosome maturation factor [Escherichia coli WV_060327]
 gi|323189112|gb|EFZ74396.1| ribosome maturation factor [Escherichia coli RN587/1]
          Length = 190

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCKAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|332163223|ref|YP_004299800.1| putative ribosome maturation factor [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667453|gb|ADZ44097.1| putative ribosome maturation factor [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861814|emb|CBX71986.1| putative ribosome maturation factor rimN [Yersinia enterocolitica
           W22703]
          Length = 181

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 8/178 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K +   
Sbjct: 6   QALQQEEVIAYPTEAVFGLGCDPDSEKAVNALLALKQRPWQKGLILIAANYEQLKPYVDD 65

Query: 77  DPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYG 132
             L+          WPGP+T V+     T      T +  +   RV      ++L   YG
Sbjct: 66  SALTDSQRETIFSVWPGPVTWVIPTHPET--PRWLTGSFDSLAVRVSDHPLVQQLCSQYG 123

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN SGQ      + +        +P ++ G +      S I +    K+ R
Sbjct: 124 KPLVSTSANLSGQEPCRTTEEV-RIQFGSSLP-VLAGLVGGRLNPSEIRDALTGKQFR 179


>gi|163840180|ref|YP_001624585.1| Sua5/YciO/YrdC/YwlC family protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162953656|gb|ABY23171.1| Sua5/YciO/YrdC/YwlC family protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 265

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 9/210 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +  A + +     I +PT+TVYG+A D+ +P A+  L   K R    P    +  + 
Sbjct: 15  AEGMAHAKKAIAQKQTIVMPTDTVYGIAADAFSPVAVATLLAAKGRGRSMPPPVLIQRVQ 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +   A  +   +  LA+ FWPG LTL+     + D       +  T   R+P       
Sbjct: 75  TMDGLAVDISEEARKLAEAFWPGGLTLIFHAQPSLDW--DLGDSFGTVALRMPDDKLVLD 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIG---LESTIVNV 183
           + T   PLA+ SANR+GQ +   V       + + + + + +G     G     STIV+ 
Sbjct: 133 LLTLTGPLAVSSANRTGQPTARTVAQA-REQLGEVVEVYLGEGERPLDGAEVQPSTIVDA 191

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYC 213
             + ++R++RPG + I+ L+  +   L++ 
Sbjct: 192 TGD-RLRVVRPGVITIDQLRGVVPSVLDFG 220


>gi|288927572|ref|ZP_06421419.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288330406|gb|EFC68990.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 189

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++KA E L  G  I  PT+T++G+  D+ N  A+ ++Y+IK+R     +IC V 
Sbjct: 1   MTREEDIKKAVEVLRKGGIILYPTDTIWGIGCDATNAEAVAKVYQIKQRDDSKAMICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + ++++  +V  ++  L +L    P TL+LD     ++ P   A   +   RV    F
Sbjct: 61  SATRMQRYVRNVPNVAWDLVELAT-KPTTLILD--DAVNLAPNLIAEDGSVALRVTDEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           +K+L   +   L   SAN SGQ +  N K  +S  +   +  +      +      S I+
Sbjct: 118 SKELCYRFQKALVSTSANISGQPAAQNYKD-ISEELLNAVDYVCWSRRQEHKPHTPSCII 176

Query: 182 NVQCEKKVRILR 193
            +  + +V ++R
Sbjct: 177 KLNKDGEVTVIR 188


>gi|227495020|ref|ZP_03925336.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces coleocanis DSM
           15436]
 gi|226831472|gb|EEH63855.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces coleocanis DSM
           15436]
          Length = 209

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 8/211 (3%)

Query: 1   MQIM---SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           M+I+      D  A     E + A  PI +PT+TVYG+  +  +  A+  +   K R   
Sbjct: 1   MRILHCVKTLDDAAKNAVKEAIAADSPIVLPTDTVYGIGGNPASTQAVNNVLAAKGRDRQ 60

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P    +S  + V   A   P +   L + FWPG LTL+L+      ++        T  
Sbjct: 61  MPPPVLISSPTEVDLVAKNIPQNARILMEKFWPGALTLILET--GDLVNYDLGDMPDTIA 118

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            R+P       I     PLA+ SAN +G    T+     +     ++ L  D G +   +
Sbjct: 119 VRMPNHPVALEILKATGPLAVTSANLTGAEPATDCAQA-TEYFGDKVALYFDAGATPGPV 177

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            STIV    E  + ILR G +    L++AI+
Sbjct: 178 PSTIVKFNGEN-LEILRAGLISETALQQAIA 207


>gi|269215181|ref|ZP_05987872.2| Sua5/YciO/YrdC/YwlC family protein [Neisseria lactamica ATCC 23970]
 gi|269208121|gb|EEZ74576.1| Sua5/YciO/YrdC/YwlC family protein [Neisseria lactamica ATCC 23970]
          Length = 250

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+  E L+ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 58  ERLIRQVVEILNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 117

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 118 ELGTYAEIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPGNAVAQAL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 177 LEELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PATVIDMTDGT 235

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 236 EL--VRRGC 242


>gi|150002664|ref|YP_001297408.1| putative translation factor [Bacteroides vulgatus ATCC 8482]
 gi|254882164|ref|ZP_05254874.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294776918|ref|ZP_06742379.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510]
 gi|319643278|ref|ZP_07997906.1| hypothetical protein HMPREF9011_03507 [Bacteroides sp. 3_1_40A]
 gi|149931088|gb|ABR37786.1| conserved hypothetical protein, putative translation factor
           [Bacteroides vulgatus ATCC 8482]
 gi|254834957|gb|EET15266.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294449166|gb|EFG17705.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510]
 gi|317385182|gb|EFV66133.1| hypothetical protein HMPREF9011_03507 [Bacteroides sp. 3_1_40A]
          Length = 191

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++ACE +  G  I  PT+T++G+  D+ NP A++R+Y+IKKR     ++  V     
Sbjct: 7   EDLKRACEVMQKGGVILYPTDTIWGIGCDATNPEAVKRVYDIKKRADSKAMLVLVDSTVK 66

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  + S  P ++  L + F   PLT++ D     ++     A   +   RV    F+K+L
Sbjct: 67  VNFYVSDVPAVAWDLIE-FTTKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQL 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
              +   +   SAN SGQ S  N    +S  + + +  I++    ++G    S+I+ +  
Sbjct: 124 CFRFRKAIVSTSANISGQPSPANFSE-ISEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGK 182

Query: 186 EKKVRILRP 194
             +V+I+R 
Sbjct: 183 GGEVKIIRE 191


>gi|15803810|ref|NP_289844.1| putative ribosome maturation factor [Escherichia coli O157:H7
           EDL933]
 gi|15833402|ref|NP_312175.1| ribosome maturation factor [Escherichia coli O157:H7 str. Sakai]
 gi|168752269|ref|ZP_02777291.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758510|ref|ZP_02783517.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769144|ref|ZP_02794151.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777860|ref|ZP_02802867.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783849|ref|ZP_02808856.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786172|ref|ZP_02811179.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168802908|ref|ZP_02827915.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|195939830|ref|ZP_03085212.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805660|ref|ZP_03247997.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813608|ref|ZP_03254937.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819808|ref|ZP_03260128.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396523|ref|YP_002272739.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325662|ref|ZP_03441746.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795219|ref|YP_003080056.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224587|ref|ZP_05938868.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254519|ref|ZP_05947052.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str.
           FRIK966]
 gi|81765049|sp|Q8X8F8|RIMN_ECO57 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|12517909|gb|AAG58404.1|AE005555_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13363621|dbj|BAB37571.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187767015|gb|EDU30859.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188013856|gb|EDU51978.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|188998860|gb|EDU67846.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354694|gb|EDU73113.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361748|gb|EDU80167.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189374185|gb|EDU92601.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189375257|gb|EDU93673.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208725461|gb|EDZ75062.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734885|gb|EDZ83572.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739931|gb|EDZ87613.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157923|gb|ACI35356.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209757398|gb|ACI77011.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|209757400|gb|ACI77012.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|209757402|gb|ACI77013.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|209757404|gb|ACI77014.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|209757406|gb|ACI77015.1| hypothetical protein ECs4148 [Escherichia coli]
 gi|217321883|gb|EEC30307.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594619|gb|ACT73980.1| predicted ribosome maturation factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|320191685|gb|EFW66335.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639587|gb|EFX09181.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O157:H7 str. G5101]
 gi|320645085|gb|EFX14101.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O157:H- str. 493-89]
 gi|320650396|gb|EFX18862.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O157:H- str. H 2687]
 gi|320655921|gb|EFX23841.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320661373|gb|EFX28788.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|326342531|gb|EGD66305.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           1044]
 gi|326344518|gb|EGD68267.1| putative ribosome maturation factor [Escherichia coli O157:H7 str.
           1125]
          Length = 190

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|298373254|ref|ZP_06983243.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274306|gb|EFI15858.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 192

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 6/187 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L++A   L AG  I  PT+TV+G+  D+ N  ++ R++EIK+RP+   +I  + D+  
Sbjct: 9   DELKEAVRVLRAGGVILYPTDTVWGIGCDATNHKSVERVFEIKRRPSSKSMIVLLDDMGK 68

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
           +  +    P        +   PLT++       ++ P       +   R+     ++ L 
Sbjct: 69  IPNYVEDMPDVAWDLVKYATEPLTVIYQ--KGKNLAPNVVGEDGSIAIRITHEEVSRSLC 126

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQCE 186
                PL   SAN SGQ S       +S  I   +  I+    ++  +   S IV +  +
Sbjct: 127 RMLCRPLVSTSANMSGQPSAATFGQ-ISEEIKAAVDYIVPLRQNEHNMPPPSRIVKLYND 185

Query: 187 KKVRILR 193
              +++R
Sbjct: 186 GVFKVIR 192


>gi|295396779|ref|ZP_06806914.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970363|gb|EFG46303.1| Sua5/YciO/YrdC/YwlC family protein [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 211

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 8/204 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I   N     +    + ++ G  IA PT++ Y L     N   I R+  I++  A 
Sbjct: 3   EILEIHPENPQPRLISSVVDVINNGGLIAYPTDSCYALGCSLDNKDGIERITRIRQLSAK 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D + + +   VD  +    K   PGP T +L          +  A  KT   
Sbjct: 63  HHFTLMCHDFAQLGQFVIVDNSAFRTIKALTPGPYTFILKATKEVP-RRMLHAKKKTVGA 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P    +  LIE  G P+   +    G+         + + I K + +I+  G +    
Sbjct: 122 RIPQNRLSLDLIEQVGEPILSSTLLLPGEDEPLTDPVDVEARIGKLVDVIVASG-TPATT 180

Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200
            ST+V+      V + R G   I+
Sbjct: 181 PSTVVDFSSSTPV-VRRVGAGSID 203


>gi|88608553|ref|YP_506460.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600722|gb|ABD46190.1| Sua5/YciO/YrdC/YwlC family protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 195

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 6/195 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L  G  +  PTETVY LA D+ N  A+ R+Y+IK+R     L   V+ IS + 
Sbjct: 2   IFETVSLLRVGGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLG 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             AS +     L +   PGP+T +L    +  +             RVP      K++  
Sbjct: 62  SFASFNESQARLIQECCPGPVTFILKRKKSAHLRFRFPEK---VAVRVPDSKVALKILRG 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +  P+   S N SG+ +++N    + S I K +  II       G  S+I+++  ++ V 
Sbjct: 119 FKRPVFATSVNLSGRPAVSNFTQ-IGSYIKKRVSRIICDNREVKGTASSIIDISGKRAV- 176

Query: 191 ILRPGGLEIETLKRA 205
           ++R G      ++  
Sbjct: 177 LVRKGAFSTSFVENL 191


>gi|300704489|ref|YP_003746092.1| hypothetical protein RCFBP_20293 [Ralstonia solanacearum CFBP2957]
 gi|299072153|emb|CBJ43485.1| conserved protein of unknown function, translation factor domain
           (SUA5) [Ralstonia solanacearum CFBP2957]
          Length = 207

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 4/198 (2%)

Query: 1   MQIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
            QI   T     +R+A E + AG  +A+PT++ Y LA    +  A+ RL  ++     + 
Sbjct: 5   FQIHPTTPQGRLIRQAAEIIRAGGLVALPTDSCYALACHLDDKAAVERLRRVRGIDEKHH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D+S +   A VD     + K   PGP   +L+         LS  + KT   RV
Sbjct: 65  LTLMCRDLSELATFARVDNKQYRVVKAATPGPFVFLLEATKEVP-RRLSHPSRKTIGLRV 123

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+   G PL   +    G  +  N    + + + +++ L+IDGG +     +
Sbjct: 124 PEHPIPLALMAELGEPLLSATLQLPGDDAPLNEAETIRARLERQLELVIDGGPAPA-EPT 182

Query: 179 TIVNVQCEKKVRILRPGG 196
           T++++   +   +    G
Sbjct: 183 TVIDLTGGEPALVREGRG 200


>gi|257094541|ref|YP_003168182.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047065|gb|ACV36253.1| Sua5/YciO/YrdC/YwlC family protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 208

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 9/201 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q +SI   N     L++A E +  G  IA+PT++ Y L     +  A+ R+  ++     
Sbjct: 3   QYLSIHPENPQARLLQRAAEVIGQGGVIALPTDSSYALGCQLGDKAAVERIRSLRGVDDR 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           + L     D+S + + A VD     L K   PG  T +L+         +     KT   
Sbjct: 63  HHLTLMCRDLSQIGQFARVDNARYRLLKATTPGSYTFILEGTRELP-RRVLHPKRKTIGL 121

Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP       L+   G PL   +   +G          +   +  ++ LI+DGG    G+
Sbjct: 122 RVPAHVVTLALLAQLGEPLLTSTLIVAGDDEPLTEAWEIRDRLDAQLELILDGGRC--GV 179

Query: 177 EST-IVNVQCEKKVRILRPGG 196
           E T +V++  +  V +    G
Sbjct: 180 EPTSVVDLTGQLPVLVRAGLG 200


>gi|299771354|ref|YP_003733380.1| yrdC domain protein [Acinetobacter sp. DR1]
 gi|298701442|gb|ADI92007.1| yrdC domain protein [Acinetobacter sp. DR1]
          Length = 205

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S
Sbjct: 13  QRLISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ST IV++  E
Sbjct: 132 LQELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTLT--STSIVDLSGE 189

Query: 187 KKVRILRPGGLEIETLK 203
               I+R G  ++   +
Sbjct: 190 HP-EIIRRGIGDVSAFE 205


>gi|241767937|ref|ZP_04765486.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax delafieldii 2AN]
 gi|241360895|gb|EER57709.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax delafieldii 2AN]
          Length = 203

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 3/177 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L  G  +A+PT++ Y L     +  A+ RL  I++    + L     D+S
Sbjct: 14  PRLLKQAAALLQKGGVVAVPTDSSYALVCHLDDKDAVDRLRRIRQVDDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            +  +A VD     L KL  PGP T +L+         +S  + KT   RVP     +L+
Sbjct: 74  ELANYARVDNRQYRLLKLGTPGPYTFILEATKEVP-RRVSHPSRKTIGLRVPDRKGLQLL 132

Query: 129 ETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
               G PL   +   +G+ +  N    +     K +  I+D G   +   +T++++ 
Sbjct: 133 LELHGAPLLATTLIPAGETAPLNDPQEIRERYEKLVDAIVDAGACPL-EPTTVIDLT 188


>gi|225010663|ref|ZP_03701133.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-3C]
 gi|225005216|gb|EEG43168.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-3C]
          Length = 188

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL+K+ E L  G  I  PT+TV+G+  D++N  A+ +++ +KKR     ++C V++++
Sbjct: 4   QEALKKSAEILKQGGVILYPTDTVWGIGCDAKNEAAVEKVFALKKRADTKSMLCLVANVA 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           M+++H +  P + +        P T++ D      +         +   RV    F   L
Sbjct: 64  MLERHIAQVPEAAYDIIDLSEKPTTIIFDQP--IGVAKNLIGPDNSLGIRVAKDKFCSYL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIVNVQCE 186
            +    PL   SAN +GQ +  N +  +S  I K +  I+           STI+ +   
Sbjct: 122 SQNIKGPLVSTSANLAGQPTPKNFQE-ISQEILKGVDYIVPLEPEIHNNTPSTIIKLSNS 180

Query: 187 KKVRILRP 194
             V+++RP
Sbjct: 181 GLVKVIRP 188


>gi|169796996|ref|YP_001714789.1| hypothetical protein ABAYE2997 [Acinetobacter baumannii AYE]
 gi|184157091|ref|YP_001845430.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU]
 gi|213156599|ref|YP_002318260.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii AB0057]
 gi|215484458|ref|YP_002326691.1| yrdC domain protein [Acinetobacter baumannii AB307-0294]
 gi|260555712|ref|ZP_05827932.1| yrdC domain-containing protein [Acinetobacter baumannii ATCC 19606]
 gi|301348043|ref|ZP_07228784.1| yrdC domain protein [Acinetobacter baumannii AB056]
 gi|301510847|ref|ZP_07236084.1| yrdC domain protein [Acinetobacter baumannii AB058]
 gi|301594335|ref|ZP_07239343.1| yrdC domain protein [Acinetobacter baumannii AB059]
 gi|332852084|ref|ZP_08433911.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013150]
 gi|332867482|ref|ZP_08437635.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013113]
 gi|332872667|ref|ZP_08440635.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6014059]
 gi|169149923|emb|CAM87817.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|183208685|gb|ACC56083.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU]
 gi|193076588|gb|ABO11251.2| hypothetical protein A1S_0813 [Acinetobacter baumannii ATCC 17978]
 gi|213055759|gb|ACJ40661.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii AB0057]
 gi|213987507|gb|ACJ57806.1| yrdC domain protein [Acinetobacter baumannii AB307-0294]
 gi|260410623|gb|EEX03921.1| yrdC domain-containing protein [Acinetobacter baumannii ATCC 19606]
 gi|322506990|gb|ADX02444.1| putative translation factor (SUA5) [Acinetobacter baumannii 1656-2]
 gi|323516857|gb|ADX91238.1| putative translation factor (SUA5) [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729456|gb|EGJ60795.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013150]
 gi|332733899|gb|EGJ65044.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013113]
 gi|332739196|gb|EGJ70055.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6014059]
          Length = 205

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S
Sbjct: 13  QRLIEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   S IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTLTTTS-IVDLSGEH 190

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  ++   +
Sbjct: 191 P-EIIRRGVGDVSAFE 205


>gi|329960182|ref|ZP_08298624.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides fluxus YIT 12057]
 gi|328532855|gb|EGF59632.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides fluxus YIT 12057]
          Length = 187

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++  V   + 
Sbjct: 3   EDIKKACQVMREGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLVLVDSTAK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L       PLT++       ++ P   A   +   RV    F+K+L
Sbjct: 63  VDFYVEDVPEIAWDLID-VTDKPLTIIYS--GARNLAPNLLAEDGSVGIRVTDEEFSKRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ S  N    +S  +   +  I+     ++G    S+I+ ++ 
Sbjct: 120 CQQFRKAIVSTSANISGQPSPGNFSE-ISEEVKSAVDYIVGYRREEMGRPKPSSIIKLEK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|254448704|ref|ZP_05062162.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium HTCC5015]
 gi|198261712|gb|EDY85999.1| Sua5/YciO/YrdC/YwlC family protein [gamma proteobacterium HTCC5015]
          Length = 206

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 5/192 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E +  G  +  PT++ Y +     +  A+ R+  I++    +       D+S + 
Sbjct: 17  VQQVAEIIRGGGIVVYPTDSSYAIGCHLDDKRALERIQRIRQVDKHHNFTLMCRDLSELG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
            +A V   +  L K   PGP T +    S      L+    KT   RVP C  T  ++E 
Sbjct: 77  NYAKVGNQAFRLLKSHTPGPYTFIFSATSQVP-RRLAHPKKKTIGLRVPDCNITLAILEA 135

Query: 131 YGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK- 188
            G P+   +           V  + L   +   +  II+GG       +T+V++  +   
Sbjct: 136 LGEPMLSTTLILPNVEWPELVDVNFLRDQLENAVDAIIEGGQIPA-EPTTVVDLTRDVPE 194

Query: 189 VRILRPGGLEIE 200
           V     G  + E
Sbjct: 195 VTRYGRGAADWE 206


>gi|262280082|ref|ZP_06057867.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260433|gb|EEY79166.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 205

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 6/197 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S
Sbjct: 13  QRLISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ST IV++  E
Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIDVFIDGGFGTLT--STSIVDLSGE 189

Query: 187 KKVRILRPGGLEIETLK 203
               I+R G  ++   +
Sbjct: 190 HP-EIIRRGIGDVSAFE 205


>gi|91212709|ref|YP_542695.1| putative ribosome maturation factor [Escherichia coli UTI89]
 gi|110643521|ref|YP_671251.1| putative ribosome maturation factor [Escherichia coli 536]
 gi|117625565|ref|YP_858888.1| putative ribosome maturation factor [Escherichia coli APEC O1]
 gi|157154846|ref|YP_001464750.1| putative ribosome maturation factor [Escherichia coli E24377A]
 gi|187733572|ref|YP_001881966.1| putative ribosome maturation factor [Shigella boydii CDC 3083-94]
 gi|188494830|ref|ZP_03002100.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638]
 gi|237703012|ref|ZP_04533493.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia sp. 3_2_53FAA]
 gi|293412701|ref|ZP_06655369.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293453601|ref|ZP_06664020.1| translation factor [Escherichia coli B088]
 gi|331674791|ref|ZP_08375548.1| protein YrdC [Escherichia coli TA280]
 gi|331679351|ref|ZP_08380021.1| protein YrdC [Escherichia coli H591]
 gi|332281837|ref|ZP_08394250.1| Sua5/YciO/YrdC family protein [Shigella sp. D9]
 gi|91074283|gb|ABE09164.1| protein YrdC [Escherichia coli UTI89]
 gi|110345113|gb|ABG71350.1| Sua5/YciO/YrdC family protein [Escherichia coli 536]
 gi|115514689|gb|ABJ02764.1| putative ribosome maturation factor [Escherichia coli APEC O1]
 gi|157076876|gb|ABV16584.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli E24377A]
 gi|187430564|gb|ACD09838.1| Sua5/YciO/YrdC/YwlC family protein [Shigella boydii CDC 3083-94]
 gi|188490029|gb|EDU65132.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 53638]
 gi|226902276|gb|EEH88535.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia sp. 3_2_53FAA]
 gi|291321727|gb|EFE61158.1| translation factor [Escherichia coli B088]
 gi|291468348|gb|EFF10841.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492223|gb|ADE90979.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli IHE3034]
 gi|331067700|gb|EGI39098.1| protein YrdC [Escherichia coli TA280]
 gi|331072523|gb|EGI43848.1| protein YrdC [Escherichia coli H591]
 gi|332104189|gb|EGJ07535.1| Sua5/YciO/YrdC family protein [Shigella sp. D9]
          Length = 205

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 23  DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 83  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198

Query: 186 EKKVR 190
            +  R
Sbjct: 199 GELFR 203


>gi|16131163|ref|NP_417741.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89110728|ref|AP_004508.1| dsRNA-binding protein [Escherichia coli str. K-12 substr. W3110]
 gi|170018482|ref|YP_001723436.1| putative ribosome maturation factor [Escherichia coli ATCC 8739]
 gi|170082803|ref|YP_001732123.1| ribosome maturation factor [Escherichia coli str. K-12 substr.
           DH10B]
 gi|194440014|ref|ZP_03072072.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1]
 gi|238902373|ref|YP_002928169.1| putative ribosome maturation factor [Escherichia coli BW2952]
 gi|253771894|ref|YP_003034725.1| ribosome maturation factor [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163210|ref|YP_003046318.1| putative ribosome maturation factor [Escherichia coli B str.
           REL606]
 gi|256025990|ref|ZP_05439855.1| putative ribosome maturation factor [Escherichia sp. 4_1_40B]
 gi|297517900|ref|ZP_06936286.1| putative ribosome maturation factor [Escherichia coli OP50]
 gi|300932175|ref|ZP_07147455.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1]
 gi|300946504|ref|ZP_07160770.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1]
 gi|300955320|ref|ZP_07167702.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1]
 gi|301021208|ref|ZP_07185242.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1]
 gi|301643898|ref|ZP_07243928.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1]
 gi|307139965|ref|ZP_07499321.1| putative ribosome maturation factor [Escherichia coli H736]
 gi|312972455|ref|ZP_07786629.1| ribosome maturation factor [Escherichia coli 1827-70]
 gi|2851671|sp|P45748|RIMN_ECOLI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=Ribosome maturation factor RimN;
           AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277674|sp|B1X6D5|RIMN_ECODH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277678|sp|B1IQ17|RIMN_ECOLC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277722|sp|A8A587|RIMN_ECOHS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|2367210|gb|AAC76307.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85676759|dbj|BAE78009.1| dsRNA-binding protein [Escherichia coli str. K12 substr. W3110]
 gi|169753410|gb|ACA76109.1| SUA5/yciO/yrdC domain [Escherichia coli ATCC 8739]
 gi|169890638|gb|ACB04345.1| predicted ribosome maturation factor [Escherichia coli str. K-12
           substr. DH10B]
 gi|194421066|gb|EDX37095.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli 101-1]
 gi|238863080|gb|ACR65078.1| predicted ribosome maturation factor [Escherichia coli BW2952]
 gi|242378809|emb|CAQ33601.1| protein involved in synthesis of
           threonylcarbamoyladenosine-modified tRNA [Escherichia
           coli BL21(DE3)]
 gi|253322938|gb|ACT27540.1| SUA5/yciO/yrdC domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975111|gb|ACT40782.1| predicted ribosome maturation factor [Escherichia coli B str.
           REL606]
 gi|253979267|gb|ACT44937.1| predicted ribosome maturation factor [Escherichia coli BL21(DE3)]
 gi|260447699|gb|ACX38121.1| SUA5/yciO/yrdC domain protein [Escherichia coli DH1]
 gi|299881616|gb|EFI89827.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 196-1]
 gi|300317764|gb|EFJ67548.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 175-1]
 gi|300453810|gb|EFK17430.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 116-1]
 gi|300460059|gb|EFK23552.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 187-1]
 gi|301077741|gb|EFK92547.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 146-1]
 gi|309703694|emb|CBJ03035.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
 gi|310334832|gb|EFQ01037.1| ribosome maturation factor [Escherichia coli 1827-70]
 gi|315137858|dbj|BAJ45017.1| dsRNA-binding protein [Escherichia coli DH1]
 gi|315617086|gb|EFU97696.1| ribosome maturation factor [Escherichia coli 3431]
 gi|323934519|gb|EGB30927.1| yrdC domain-containing protein [Escherichia coli E1520]
 gi|323939296|gb|EGB35508.1| yrdC domain-containing protein [Escherichia coli E482]
 gi|323959567|gb|EGB55220.1| yrdC domain-containing protein [Escherichia coli H489]
 gi|323970086|gb|EGB65360.1| yrdC domain-containing protein [Escherichia coli TA007]
 gi|332345230|gb|AEE58564.1| ribosome maturation factor protein [Escherichia coli UMNK88]
          Length = 190

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|160890843|ref|ZP_02071846.1| hypothetical protein BACUNI_03288 [Bacteroides uniformis ATCC 8492]
 gi|270295850|ref|ZP_06202050.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20]
 gi|156859842|gb|EDO53273.1| hypothetical protein BACUNI_03288 [Bacteroides uniformis ATCC 8492]
 gi|270273254|gb|EFA19116.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D20]
          Length = 187

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMSEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L +     PLT++       ++ P   A   +   RV    F+K+L
Sbjct: 63  VDFYVQDVPEVAWDLIE-LADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTSEAFSKRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ S  N    +S  I   +  I+     + G    S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANVSGQPSPGNFSE-ISEDIKSAVDYIVGYRQEETGRPKPSSIIKLGK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|309379075|emb|CBX22377.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 206

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E L+ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIRQAVEILNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAEIDNVQFRQLKAATPGPYTFILQATKDVPARAL-HPKRKTIGLRIPGNAVAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 133 LEELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PATVIDMTDGT 191

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 192 EL--VRRGC 198


>gi|157372740|ref|YP_001480729.1| putative ribosome maturation factor [Serratia proteamaculans 568]
 gi|212288231|sp|A8GKG1|RIMN_SERP5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|157324504|gb|ABV43601.1| SUA5/yciO/yrdC domain [Serratia proteamaculans 568]
          Length = 189

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 8/180 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
             + L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   +D + +  + 
Sbjct: 12  IIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILIAADYAQLTPYI 71

Query: 75  SVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
               L+          WPGP+T V+   S T    L T    +   RV      ++L   
Sbjct: 72  DDTALNEQQRATMFASWPGPVTWVIPARSET--SRLLTGRFNSLAVRVSDHPLVQQLCRQ 129

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PL   SAN SGQ    +   +         PL + G +      S I +V   +++R
Sbjct: 130 FGKPLVSTSANLSGQEPCRSADEV-QQQFGAAFPL-LAGSVGGRLNPSEIRDVLTGEQIR 187


>gi|317479725|ref|ZP_07938847.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36]
 gi|316904095|gb|EFV25927.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 4_1_36]
          Length = 197

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 13  EDIKKACQVMSEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLVLVDSPVK 72

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L +     PLT++       ++ P   A   +   RV    F+K+L
Sbjct: 73  VDFYVQDVPEVAWDLIE-LADKPLTIIYS--GARNLAPNLLAEDGSVGIRVTSEAFSKRL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ S  N    +S  I   +  I+     + G    S+I+ +  
Sbjct: 130 CQQFRKAIVSTSANVSGQPSPGNFSE-ISEDIKSAVDYIVGYRQEETGRPKPSSIIKLGK 188

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 189 GGVIKIIRE 197


>gi|84496393|ref|ZP_00995247.1| hypothetical protein JNB_02700 [Janibacter sp. HTCC2649]
 gi|84383161|gb|EAP99042.1| hypothetical protein JNB_02700 [Janibacter sp. HTCC2649]
          Length = 207

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++++A + L  G  IA PT++ Y L     N +A  R+ +I+K    +      +D +
Sbjct: 14  PRSIKQAVDTLREGGLIAYPTDSGYALGAALGNQSAKDRIRDIRKLDDKHHYTLVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +     VD       K   PGP T +L          +     KT   R+P     + L
Sbjct: 74  QLGHFVHVDNAVFRAVKASTPGPYTFILPATGEVP-RRVLHPKKKTVGVRIPEHPVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   +    G+         +   +   + ++ID G       +T++++  + 
Sbjct: 133 LAELGEPMLTSTLILPGETEPMTDGWQVKEELDHVVDVVIDSGECGT-EPTTVIDLSGD- 190

Query: 188 KVRILRPGGLEIETLK 203
              +LR G  +    +
Sbjct: 191 VAEVLRVGAGDPSRFE 206


>gi|292492352|ref|YP_003527791.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus halophilus Nc4]
 gi|291580947|gb|ADE15404.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosococcus halophilus Nc4]
          Length = 209

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 70/188 (37%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A   L     I  PT++ Y L     N  A  R+  ++     +       D+S
Sbjct: 14  QRLLNQAVTILRQEGLIVYPTDSGYALGCQVGNKAAADRIRHLRGLGTRHEFSLVGRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A V   +  L K   PG  T +           L     +T   R+P    T+ L
Sbjct: 74  ELSLYARVGNSAFRLLKALTPGAYTFIFKATREVP-RRLQDPKRRTIGIRIPDNSITQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   I  ++ L+IDGG       +T+V++  E 
Sbjct: 133 LAALGEPLISSTLILPGEEMPLTDPEGIRDRIGSQVDLVIDGGYCGF-EPTTVVDL-VED 190

Query: 188 KVRILRPG 195
             +I+R G
Sbjct: 191 IPKIIREG 198


>gi|218550558|ref|YP_002384349.1| ribosome maturation factor [Escherichia fergusonii ATCC 35469]
 gi|218358099|emb|CAQ90746.1| putative ribosome maturation factor [Escherichia fergusonii ATCC
           35469]
 gi|323966244|gb|EGB61679.1| yrdC domain-containing protein [Escherichia coli M863]
 gi|323974765|gb|EGB69878.1| yrdC domain-containing protein [Escherichia coli TW10509]
 gi|324111961|gb|EGC05940.1| yrdC domain-containing protein [Escherichia fergusonii B253]
 gi|325498851|gb|EGC96710.1| ribosome maturation factor [Escherichia fergusonii ECD227]
 gi|327250931|gb|EGE62624.1| ribosome maturation factor [Escherichia coli STEC_7v]
          Length = 190

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +                 WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDCMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|291284641|ref|YP_003501459.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|290764514|gb|ADD58475.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli O55:H7 str.
           CB9615]
          Length = 205

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 23  DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 83  LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198

Query: 186 EKKVR 190
            +  R
Sbjct: 199 GELFR 203


>gi|331664895|ref|ZP_08365796.1| protein YrdC [Escherichia coli TA143]
 gi|331057405|gb|EGI29391.1| protein YrdC [Escherichia coli TA143]
          Length = 190

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 72/185 (38%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  +  A+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +                 WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSHWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|240081150|ref|ZP_04725693.1| hypothetical protein NgonF_07548 [Neisseria gonorrhoeae FA19]
          Length = 206

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 14  ERLIKQAVEIINQGGVVVYPTDSCYALGCKLGDKVAMERILSIRKIDLKHHLTLMCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  ELGTYAKIDNVQFRQLKAATPGPYTFILQATKDAPARAL-HPKRKTIGLRIPDNAVAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 133 LEELGGPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PTTVIDMTDGT 191

Query: 188 KVRILRPG 195
           ++  +R G
Sbjct: 192 EL--VRRG 197


>gi|13096287|pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli
 gi|13096288|pdb|1HRU|B Chain B, The Structure Of The Yrdc Gene Product From E.Coli
          Length = 188

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTXLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|289191931|ref|YP_003457872.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938381|gb|ADC69136.1| Sua5/YciO/YrdC/YwlC family protein [Methanocaldococcus sp.
           FS406-22]
          Length = 216

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 14/213 (6%)

Query: 2   QIMSIT--DSNALRKACEFLD----AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
           +I+ I   D N  +K  +FL      G  I   T+T+YG++ ++ +  A++++YEIK+R 
Sbjct: 6   KIIKIYELDENERKKVLDFLKEEILNGKIIICGTDTLYGISANALDEKAVKKVYEIKRRD 65

Query: 56  AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
              PL   V D S ++K+A V+ L+  +   F PG LT++L       + P   A     
Sbjct: 66  FSKPLSICVKDKSEIEKYAYVNDLAKKIIDKFLPGALTIIL---KKKPVIPDIVAK-DYV 121

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P     +  E    PL   SAN SG+ S T+V   +   I K +  ++D G  K  
Sbjct: 122 GIRIPDEPIIR--ELSIVPLTTTSANISGKESPTSVNE-IDEEILKNVDYVVDIGKCKYS 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208
             ST +    + K+  +R G +    +++  ++
Sbjct: 179 KPST-IIKIEDDKIIPIREGVIPFSKIRKVANI 210


>gi|297180818|gb|ADI17024.1| putative translation factor (sua5) [uncultured Vibrionales
           bacterium HF0010_22E23]
          Length = 197

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L  G  IA PTE V+G+  D  +  AI  L  +K+R     LI   S +  + 
Sbjct: 16  VEQCVEALRRGEVIAYPTEGVFGVGCDPDDSRAIEALLAVKERRKAKGLILIASSLEQLN 75

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +  L        K  WPGP+T V+       +    +    T   RV      + L
Sbjct: 76  GYIDMSQLPDSVKEQVKASWPGPVTWVMP--KGEKVTSWVSGQFDTVAVRVSDHPDVQAL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            + +G P+   SAN +G+    +V  +    + + +  + DG        + I +     
Sbjct: 134 CQAFGKPITSTSANLAGEPPCMSVADVELH-LSERVKTVFDGKTGNRDKPTEIRDALTGN 192

Query: 188 KVR 190
            +R
Sbjct: 193 ILR 195


>gi|156083739|ref|XP_001609353.1| translation factor Sua5 [Babesia bovis T2Bo]
 gi|154796604|gb|EDO05785.1| translation factor Sua5, putative [Babesia bovis]
          Length = 453

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 16/195 (8%)

Query: 4   MSITDSNALRKACEFLDA-----GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +++TD++   +  + L +     G  IA+PTETVYGLA +     ++ R++E+K RP  +
Sbjct: 15  VTLTDTSI--ETLDLLKSHLSIPGNLIALPTETVYGLAANGLCEKSVLRIFEVKGRPLTD 72

Query: 59  PLICHVSDISMVKKHASVDPLS-----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           P+I HV              L      L+L+  F PGPLT++      + I  + +AN  
Sbjct: 73  PVILHVPSFEDALSSIFDADLYTACVVLYLSLHFSPGPLTII--TRGRSGIPRVVSANSG 130

Query: 114 TACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
               R P     + +++  G PLA PSAN+ G IS T   H++S         ++DGG  
Sbjct: 131 YPAVRCPNHPDAQAILKHIGFPLAAPSANKFGHISPTTADHVISE-FKDVHMYVVDGGSC 189

Query: 173 KIGLESTIVNVQCEK 187
            +GLEST+  ++   
Sbjct: 190 SLGLESTVAKLESTG 204



 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 29/166 (17%)

Query: 188 KVRILRPGGLEIETLKRAISVEL--------EYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           ++ ILRPG +    LK   +  L              T    SPGM+ +HYAP     L 
Sbjct: 275 RITILRPGFITEADLKNIFANSLFSVSVSRKTVYSSGTDVCDSPGMILTHYAPSVPTYLI 334

Query: 240 A------IHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDS- 292
           +          P   ++   +  + N ++ +    ++     +  A NL+  ++ A+++ 
Sbjct: 335 SGTVPLGTEKVPANRIVMIDSDGMFNDKSGLFLSYIALGSTDENMAHNLYGALREAEEAA 394

Query: 293 ----------GA--SSIAFSSIPNHG--LGIAINNRLERAAAPRNQ 324
                     GA  ++I   S  + G  L   + +RL RA++ R  
Sbjct: 395 LCYNKPLGDLGATDTAIIVISYKDRGTELNATLRDRLIRASSGRTI 440


>gi|157162756|ref|YP_001460074.1| putative ribosome maturation factor [Escherichia coli HS]
 gi|331643978|ref|ZP_08345107.1| protein YrdC [Escherichia coli H736]
 gi|157068436|gb|ABV07691.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli HS]
 gi|331036272|gb|EGI08498.1| protein YrdC [Escherichia coli H736]
          Length = 205

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 23  DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 83  LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198

Query: 186 EKKVR 190
            +  R
Sbjct: 199 GELFR 203


>gi|224535867|ref|ZP_03676406.1| hypothetical protein BACCELL_00731 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522590|gb|EEF91695.1| hypothetical protein BACCELL_00731 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 187

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTIWGIGCDATNEEAVRRVYEIKQRSDSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++ P   A   +   RV   GF+K+L
Sbjct: 63  VDFYVQDVPEVAWDLIEVA-DKPLTIIYS--GARNLAPNLIAEDGSVGIRVTNEGFSKRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ S  N    ++  +   +  ++     ++G    S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANISGQPSPANYSE-ITEELKSMVDYVVGYRREEMGHPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|319947035|ref|ZP_08021269.1| Sua5/YciO/YrdC family protein [Streptococcus australis ATCC 700641]
 gi|319747083|gb|EFV99342.1| Sua5/YciO/YrdC family protein [Streptococcus australis ATCC 700641]
          Length = 203

 Score =  156 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 9/200 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           L+AG  + +PTETVYGL   + +  A+ ++Y +K+RP    +  ++S    ++ ++    
Sbjct: 8   LEAGYAVVLPTETVYGLFAKALDKAAVDQVYALKQRPREKAMNLNISSEEGIRFYSKNQP 67

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLA 136
           P    L   F PGPLT++L+  +   +     + + T  FR+P    T +LI   G PL 
Sbjct: 68  PYLSKLIASFLPGPLTIILE--ANEKVPAWINSGMATVGFRMPAHPKTLELIHKTG-PLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG+ S T  + IL       + L  D  ++  G +STI+++    K RILR G 
Sbjct: 125 GPSANLSGKASGTQCQQILKELGHGVLGLEDDSFLT--GQDSTILDLTG-PKARILRQGA 181

Query: 197 LEIETL-KRAISVELEYCVD 215
           +    + +R   +  E   D
Sbjct: 182 ITRSEIFQRVPEIPFEEEED 201


>gi|325294265|ref|YP_004280779.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064713|gb|ADY72720.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 203

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 12/209 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ++S  D   + K  + L AG  I  PT+T++G+  ++ +   +++LY +KKR    PL
Sbjct: 1   MQVLSKED---IEKISQILRAGELICSPTDTLFGILGNALDKEVVKKLYSVKKRDVNKPL 57

Query: 61  ICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   S I  +     + PL  L+  K  +P P+T++L L   +    +          R+
Sbjct: 58  IVLFSSIEQLVNFGVLVPLKYLNGLKKLYPAPVTVILPLSKESPFRKVFQ--RDNLAVRI 115

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P   F +KLI+    PL  PSAN  G++   N K    +     I   I+G +S+    S
Sbjct: 116 PKDDFLQKLIKK-TFPLFAPSANPQGELPAKNCKEC-KNYFDGVINFCIEGKVSEA--PS 171

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           TIV++  E  V ++R G ++ E +   +S
Sbjct: 172 TIVDLTGETPV-LIRKGIVKFEKVLEVLS 199


>gi|325860005|ref|ZP_08173132.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola CRIS
           18C-A]
 gi|327313739|ref|YP_004329176.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola F0289]
 gi|325482531|gb|EGC85537.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola CRIS
           18C-A]
 gi|326944894|gb|AEA20779.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella denticola F0289]
          Length = 189

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +   + ++KA + +  G  I  PT+TV+G+  D+ N  A+ ++Y +K+R     LIC V 
Sbjct: 1   MKQEDDIKKAIDVMKNGGIILYPTDTVWGIGCDATNAEAVAKVYALKRRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
               ++++  SV  ++  L       P TL+LD     ++     A   +   R+    F
Sbjct: 61  SDDRLQRYVRSVPDVAWQLIDAV-DKPTTLILD--GAVNLAENLIAQDGSIGMRITKEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           + +L   +   +   SAN SG+ S  N   I    I   +  + +    +      S+IV
Sbjct: 118 SHELCYRFQKAIVSTSANISGEPSAQNYCDISQEIIDG-VDYVCESRRQEHKPHTPSSIV 176

Query: 182 NVQCEKKVRILR 193
            +  + +V+I+R
Sbjct: 177 KLGIDGQVKIIR 188


>gi|313848034|emb|CBY17032.1| hypothetical protein Cpsi_5031 [Chlamydophila psittaci RD1]
          Length = 292

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 16/206 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+A ++LD G  IA PT+TVYGL V    P A  ++Y++K R     L+ +V+ I  ++
Sbjct: 14  LRQAADYLDQGKVIAFPTDTVYGLGVALNYPNAEEKIYDLKHRDQGKSLVVYVNTIEDIE 73

Query: 72  KH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128
           K    ++   +L L++ F PGPLTL++D       H     + +   FR+       KLI
Sbjct: 74  KFSGCTLSTHALKLSQKFLPGPLTLLVD-------HKNPRFHQEKLGFRILSIPIVNKLI 126

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G PL   SAN S        K +L     ++I   +  G    GLEST++       
Sbjct: 127 DLAG-PLLGTSANISNFPPAITSKEVLEDFCQEDI--CVIPGCCSYGLESTVI---SADP 180

Query: 189 VRILRPGGLEIETLKRAISVELEYCV 214
           ++I R G +  + ++  +  +++ C+
Sbjct: 181 LKIYREGMIPHQVIEDVVGEKIDACL 206


>gi|332749752|gb|EGJ80167.1| ribosome maturation factor [Shigella flexneri 4343-70]
 gi|332998321|gb|EGK17921.1| ribosome maturation factor [Shigella flexneri K-218]
          Length = 190

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + Y  PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYDKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|317485885|ref|ZP_07944745.1| Sua5/YciO/YrdC/YwlC family protein [Bilophila wadsworthia 3_1_6]
 gi|316922859|gb|EFV44085.1| Sua5/YciO/YrdC/YwlC family protein [Bilophila wadsworthia 3_1_6]
          Length = 217

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 3/196 (1%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
             ++A E +  G P+  PTET + L   + +  A  R+Y  K R  + PL   + D   +
Sbjct: 16  DFKRAVELMLDGHPVIFPTETFFALGSRALDADATARVYRAKHRSTVRPLPLILGDWEQL 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
              A V    + L K FWPGPL+++    +   +  + T        R+      + L +
Sbjct: 76  DMIAKVHDELMPLLKRFWPGPLSVIFP--ARLRVPDILTGGTGRVAVRLSSHPVARALAQ 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P+   SAN SG  ++ +V  +    I   + ++ +  +   GL ST+V    + ++
Sbjct: 134 AVGEPITSSSANISGNPAVVSVNQLDEELIASVMGILDEPPVPAGGLPSTLVERMEDGRL 193

Query: 190 RILRPGGLEIETLKRA 205
           R+LR G +    +  A
Sbjct: 194 RLLRAGAVTSAQIAEA 209


>gi|218691569|ref|YP_002399781.1| putative ribosome maturation factor [Escherichia coli ED1a]
 gi|227883414|ref|ZP_04001219.1| ribosome maturation factor [Escherichia coli 83972]
 gi|300979819|ref|ZP_07174721.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1]
 gi|301046053|ref|ZP_07193232.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1]
 gi|331649079|ref|ZP_08350165.1| protein YrdC [Escherichia coli M605]
 gi|212277724|sp|Q8FD17|RIMN_ECOL6 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|218429133|emb|CAR10085.2| putative ribosome maturation factor [Escherichia coli ED1a]
 gi|227839558|gb|EEJ50024.1| ribosome maturation factor [Escherichia coli 83972]
 gi|281180317|dbj|BAI56647.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300301938|gb|EFJ58323.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 185-1]
 gi|300409425|gb|EFJ92963.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 45-1]
 gi|315292342|gb|EFU51694.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 153-1]
 gi|324009048|gb|EGB78267.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 57-2]
 gi|330909327|gb|EGH37841.1| YrdC subfamily, required for N6-threonylcarbamoyl adenosine t(6)A37
           modification in tRNA [Escherichia coli AA86]
 gi|331041577|gb|EGI13721.1| protein YrdC [Escherichia coli M605]
          Length = 190

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKRRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|213865417|ref|ZP_03387536.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 182

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
               + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K 
Sbjct: 3   AAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKP 62

Query: 73  HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +     L+    K     WPGP+T V    +TT      T    +   RV        L 
Sbjct: 63  YIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVALC 120

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             YG PL   SAN SG      V+ +  +    + P +++G        S I +    + 
Sbjct: 121 NAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTGEL 178

Query: 189 VR 190
            R
Sbjct: 179 FR 180


>gi|239501228|ref|ZP_04660538.1| yrdC domain protein [Acinetobacter baumannii AB900]
          Length = 205

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S
Sbjct: 13  QRLIEQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNATYRLLKANTPAITTFILSATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   S IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRIDVFIDGGFGTLTTTS-IVDLSGEH 190

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  ++   +
Sbjct: 191 P-EIIRRGVGDVSAFE 205


>gi|325284999|ref|YP_004260789.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489]
 gi|324320453|gb|ADY27918.1| Sua5/YciO/YrdC/YwlC family protein [Cellulophaga lytica DSM 7489]
          Length = 196

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 5/186 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + K    L+ G  I  PT+TV+G+  D+ N  A+ ++Y++KKR     +IC V++  M
Sbjct: 13  DEINKCITVLENGGVILYPTDTVWGIGCDATNEDAVNKIYQLKKRANTKTMICLVANDFM 72

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128
           ++KH    P            P T+V D     +I     A  K+   RV    F + LI
Sbjct: 73  LEKHVEKVPEVAFDIIDIADKPTTIVYDNPK--NIAKNLIAEDKSLAIRVATDKFCQYLI 130

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLESTIVNVQCEK 187
             +  P+   SAN SG  +  + K I S  +   +  + +   I K+   S+I+ +  + 
Sbjct: 131 SKFKKPIVSTSANLSGDPTAKSFKEISSDILKGVDYAVNLQRNIQKV-TPSSIIKLSNDG 189

Query: 188 KVRILR 193
            V+++R
Sbjct: 190 TVKVIR 195


>gi|260550969|ref|ZP_05825174.1| yrdC domain-containing protein [Acinetobacter sp. RUH2624]
 gi|260405917|gb|EEW99404.1| yrdC domain-containing protein [Acinetobacter sp. RUH2624]
          Length = 205

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E + AG  +  PT+  Y +     N  A+ R+ +I+     +       D+S
Sbjct: 13  QRLIDQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRDLGPKHQYAIMCCDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + + S + K I + IDGG   +   S IV++  E 
Sbjct: 132 LKELGEPLLTSTLILPGQEDPLDDPYDIESQLSKRIDVFIDGGFGTLTTTS-IVDLSGEH 190

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  ++   +
Sbjct: 191 P-EIIRHGAGDVSAFE 205


>gi|332525339|ref|ZP_08401504.1| Sua5/YciO/YrdC/YwlC [Rubrivivax benzoatilyticus JA2]
 gi|332108613|gb|EGJ09837.1| Sua5/YciO/YrdC/YwlC [Rubrivivax benzoatilyticus JA2]
          Length = 207

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A E L  G  +A+PT++ Y L     +  A  +L  ++     + L     D+S
Sbjct: 14  PRLLKQAAELLRGGDVLAVPTDSSYALVCRLDDKAAAEQLRRLRGIDDKHLLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L KL  PGP T +LD         +S  + +T   RVP    T+ L
Sbjct: 74  ELANYARVDNRQYRLLKLGTPGPYTFILDATKEVP-RRVSHPSRRTIGLRVPDHQVTQDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  YG PL   +    G     N    +   + K +P IID G   +   +T++++  E 
Sbjct: 133 LAVYGEPLLATTLILPGDDEPLNDVDEIQDRLGKLLPAIIDAGACPM-EPTTVLDMTAED 191

Query: 188 KVRILRPGG 196
            V + +  G
Sbjct: 192 PVLVRQGRG 200


>gi|294638016|ref|ZP_06716276.1| protein RimN [Edwardsiella tarda ATCC 23685]
 gi|291088808|gb|EFE21369.1| protein RimN [Edwardsiella tarda ATCC 23685]
          Length = 190

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 8/192 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++    +++L      L     IA PTE V+GL  D  + +A++ L ++K+RP    LI 
Sbjct: 1   MIDKPQNDSLADVLAALRQQRVIAYPTEAVFGLGCDPDSESAVQALLDLKQRPWDKGLIL 60

Query: 63  HVSDISMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             +D   +  +   + L       +F  WPGP+T V+   +  D     T    T   RV
Sbjct: 61  IAADYQQLLPYVCDEALQGERRTAVFARWPGPVTWVMP--ARDDTPRWLTGRFSTLAVRV 118

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 ++L   YG PL   SAN SG     +   +         P ++D  +      S
Sbjct: 119 SAHPMVQQLCRAYGKPLVSTSANLSGLAPCRSASEV-REQFGARFP-VLDAAVGGRQNPS 176

Query: 179 TIVNVQCEKKVR 190
            I +    +  R
Sbjct: 177 EIRDALSGELFR 188


>gi|237712469|ref|ZP_04542950.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237726660|ref|ZP_04557141.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265752175|ref|ZP_06087968.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA]
 gi|229435186|gb|EEO45263.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229453790|gb|EEO59511.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263236967|gb|EEZ22437.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_33FAA]
          Length = 191

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L+KACE +  G  I  PT+T++G+  D+ NP A++R+Y+IKKR     ++  V     
Sbjct: 7   EDLKKACEVMQKGGVILYPTDTIWGIGCDATNPKAVKRVYDIKKRADSKAMLVLVDSTVK 66

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  + S  P ++  L + F   PLT++ D     ++     A   +   RV    F+K+L
Sbjct: 67  VNFYVSDVPAVAWDLIE-FATKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQL 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
              +   +   SAN SGQ S  N    +S  + + +  I++    ++G    S+I+ +  
Sbjct: 124 CFRFRKAIVSTSANISGQPSPANFSE-ISEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGK 182

Query: 186 EKKVRILRP 194
             +V+I+R 
Sbjct: 183 GGEVKIIRE 191


>gi|257068424|ref|YP_003154679.1| translation factor SUA5 [Brachybacterium faecium DSM 4810]
 gi|256559242|gb|ACU85089.1| translation factor SUA5 [Brachybacterium faecium DSM 4810]
          Length = 211

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L+AG  IA PT++ Y L     N   + R+  I++    +      +D +
Sbjct: 20  PRLIAQAAAVLEAGGLIAYPTDSCYALGCALGNAEGLERIRRIRQVGKDHHFTLVCADFA 79

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   V   +  L K   PGP T +L          +S     T   R+P       L
Sbjct: 80  QLGQFVLVSNPTFRLVKNATPGPYTFILRATREVP-RKMSHPKKHTVGVRIPDHRVAHAL 138

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G P+A  +    GQ        ++   + +++  IID G       +T++++    
Sbjct: 139 VEALGEPIASSTLLLPGQEEPPTEGWVVQDLLGEQVDAIIDSGEVGT-EPTTVIDLSSGD 197

Query: 188 KVRILRPGGLEI 199
            + I R G  ++
Sbjct: 198 -LVIAREGAGDL 208


>gi|313889339|ref|ZP_07822987.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313122171|gb|EFR45262.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 197

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            ++ G  + +PTETVYGL   + +  A+ ++Y +K+RP    +  +V+D   +  ++   
Sbjct: 7   IIENGGALILPTETVYGLFAKAMDEQAVNKVYALKQRPREKAMNLNVADYQAILDYSKDQ 66

Query: 78  PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
           P  L  L   F PGPLT++L   +   +     +   T  FR+P       +     PL 
Sbjct: 67  PAYLKELYDAFLPGPLTIIL--KANDRVPFWINSGKDTVGFRLPKHPVTAQLIRLAGPLI 124

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            PSAN SG  S      I+ +   +      D  ++  G +STI+++   K  +ILR G 
Sbjct: 125 GPSANLSGSQSGRRYADIIRAFHNQVEGYEDDQFLT--GEDSTIIDLSGSK-AKILRQGS 181

Query: 197 LEIETLKRAIS 207
           +    ++  IS
Sbjct: 182 ISAAHIQAKIS 192


>gi|330469857|ref|YP_004407600.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032]
 gi|328812828|gb|AEB47000.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032]
          Length = 214

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 5   SITDSN-ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           S+ D +  +  A E +  G  + +PT+TVYG+  D+  P A+R L + K  P   P    
Sbjct: 7   SMADRDRGIAAAIEAVRNGELVVLPTDTVYGIGADAFTPYAVRALLDAKDAPHS-PPPVL 65

Query: 64  VSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +     +     S+   +  L + FWPG LT+++   ++  +      +      R+P  
Sbjct: 66  IGSRHTLDGLVFSLPTAARDLVEAFWPGALTILVQHSAS--LRWDLGDDSGVVAVRMPLH 123

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     P+A+ SAN+ GQ             +   +   ++ G +   + STIV+
Sbjct: 124 PVALEVLRETGPMAVASANKFGQQPALTADEA-RDQLGYSVRAYLEAGPAVDPVPSTIVD 182

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           +  +  V ++R GG+ +  L+  +
Sbjct: 183 LTGDVPV-LVREGGIGLAKLREVV 205


>gi|167621974|ref|YP_001672268.1| SUA5/yciO/yrdC domain-containing protein [Shewanella halifaxensis
           HAW-EB4]
 gi|212288222|sp|B0TLD6|RIMN_SHEHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|167351996|gb|ABZ74609.1| SUA5/yciO/yrdC domain [Shewanella halifaxensis HAW-EB4]
          Length = 187

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 7/180 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
             E ++ G  IA PTE VYGL  D  N  AI RL EIK RP    LI    D   +  + 
Sbjct: 9   VAELVEQGGVIAYPTEAVYGLGCDPDNDDAIERLLEIKLRPWQKGLILVAGDYQQLLPYI 68

Query: 75  SVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
               LS          WPGP T ++ +     +  L + +  +   RV      K L   
Sbjct: 69  DESQLSAEQLAFVHSKWPGPFTFIMPVKPG--LSNLLSGSFDSIAVRVTAHEGVKALCAA 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN +GQ    +   +        I  ++ G +      STI++ +  + +R
Sbjct: 127 INKPIVSTSANLTGQDPALSGAAV-KQQFEGIIAGLVIGDLGIQASPSTIIDAKSGQVIR 185


>gi|212691027|ref|ZP_03299155.1| hypothetical protein BACDOR_00517 [Bacteroides dorei DSM 17855]
 gi|212666259|gb|EEB26831.1| hypothetical protein BACDOR_00517 [Bacteroides dorei DSM 17855]
          Length = 191

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L+KACE +  G  I  PT+T++G+  D+ NP A++R+Y+IKKR     ++  V     
Sbjct: 7   EDLKKACEVMQKGGVILYPTDTIWGIGCDATNPKAVKRVYDIKKRADSKAMLVLVDSTVK 66

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  + S  P ++ +L + F   PLT++ D     ++     A   +   RV    F+K+L
Sbjct: 67  VNFYVSDVPAVAWNLIE-FATKPLTIIYD--GARNLAENLLAEDGSVGIRVTAEEFSKQL 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
              +   +   SAN SGQ S  N    +S  + + +  I++    ++G    S+I+ +  
Sbjct: 124 CFRFRKAIVSTSANISGQPSPANFSE-ISEEVKQAVDYIVEYRQDEVGHPKPSSIIKLGK 182

Query: 186 EKKVRILRP 194
             +V+I+R 
Sbjct: 183 GGEVKIIRE 191


>gi|218706890|ref|YP_002414409.1| putative ribosome maturation factor [Escherichia coli UMN026]
 gi|293406880|ref|ZP_06650804.1| ribosome maturation factor [Escherichia coli FVEC1412]
 gi|300896630|ref|ZP_07115147.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1]
 gi|301018860|ref|ZP_07183099.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1]
 gi|218433987|emb|CAR14904.1| putative ribosome maturation factor [Escherichia coli UMN026]
 gi|291425691|gb|EFE98725.1| ribosome maturation factor [Escherichia coli FVEC1412]
 gi|300359507|gb|EFJ75377.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 198-1]
 gi|300399517|gb|EFJ83055.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 69-1]
          Length = 190

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  +  A+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|307822750|ref|ZP_07652981.1| SUA5/yciO/yrdC domain protein [Methylobacter tundripaludum SV96]
 gi|307736354|gb|EFO07200.1| SUA5/yciO/yrdC domain protein [Methylobacter tundripaludum SV96]
          Length = 185

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 4/188 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M       ++ A   L AG  IA PTE VYGL  D  N  A+  L EIK+RP    LI  
Sbjct: 1   MPYHSPFKIKNAVRHLKAGAVIAYPTEAVYGLGCDPLNEDAVMTLLEIKQRPIEKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            S +  ++ +  +D   +      WPGP+T V+       +        ++   RV    
Sbjct: 61  ASSLEQLRPYLVLDKTLIDRITPTWPGPVTWVIPAQPW--VPKWLRGEHQSLAVRVTNHP 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             + L   +G PL   SAN + + +I   + +L +    +I  I+ G + ++  E+ I +
Sbjct: 119 IARDLCAQFGSPLVSTSANPTTRPAIKESRKLLKTFADADI-FIVHGKVGELAQETAIYD 177

Query: 183 VQCEKKVR 190
               K++R
Sbjct: 178 AVSGKRLR 185


>gi|194246572|ref|YP_002004211.1| Translation factor [Candidatus Phytoplasma mali]
 gi|193806929|emb|CAP18361.1| Translation factor [Candidatus Phytoplasma mali]
          Length = 187

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 6/189 (3%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I  PT+T+YG+     +   I ++Y++KKR    PL    +D+S V+    ++ 
Sbjct: 1   MKKGSLIIFPTDTIYGIGAKINDNEGINKIYKLKKRDFSKPLSVLFADLSQVRHLVKINS 60

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
            S  L   FWPGPLTL+L   S                 R P       +     PL   
Sbjct: 61  TSRKLINYFWPGPLTLILKTTS----FYKKKNKENNLGIRQPKHPLALKLLKKHGPLKTT 116

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEKKVRILRPGGL 197
           S N SG     N   ++     K++  I      +   L ST++++Q     +ILR G +
Sbjct: 117 SVNISGFP-PLNNYKVIRQIYEKKVDYIFYSSNQNLSKLSSTVLDLQLNNNFKILREGSI 175

Query: 198 EIETLKRAI 206
             E + + I
Sbjct: 176 TKEMIYKVI 184


>gi|298207806|ref|YP_003715985.1| hypothetical protein CA2559_06115 [Croceibacter atlanticus
           HTCC2559]
 gi|83850444|gb|EAP88312.1| hypothetical protein CA2559_06115 [Croceibacter atlanticus
           HTCC2559]
          Length = 186

 Score =  155 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 5/187 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L K    L  G  I  PT+T++G+  D+ N  A+++++E+KKR     L+C V D  
Sbjct: 2   KEELNKCLNVLKKGGLILYPTDTIWGIGCDATNYDAVQKVFELKKRAESKALVCLVHDYK 61

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           M+ ++    P   +    +   P T++ D      +        ++   RV    F   L
Sbjct: 62  MLNQYIENIPEVAYDILKYAQKPTTIIYD--KAKLVAENVVGEDESLAVRVAKDKFCNDL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCE 186
           ++ +  PL   SAN SG+ S  N K  +S  I K +  +++   +K +   S I+ +  +
Sbjct: 120 VKKFKRPLVSTSANISGKPSPKNFKE-ISDEILKGVDYVVNLHQNKNMAKPSAIIKLGSD 178

Query: 187 KKVRILR 193
             V++LR
Sbjct: 179 GMVKVLR 185


>gi|295134942|ref|YP_003585618.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87]
 gi|294982957|gb|ADF53422.1| YrdC domain-containing protein [Zunongwangia profunda SM-A87]
          Length = 189

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 3/186 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              ++     L  G  I  PT+TV+G+  D+ N  AI +++ +KKR     +IC VSD  
Sbjct: 5   KTEIQNCLAVLKKGGIILYPTDTVWGIGCDATNADAIDKIFALKKRAESKSMICLVSDFK 64

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
           M+ ++    P   +    +   P +++ D      +     A   T   RV    F K+L
Sbjct: 65  MLNEYVEEVPEVAYDILKYAAKPTSIIYD--DPIRVAENIIAEDNTLAIRVTKDPFCKEL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            +    PL   SAN SGQ +  +   I    +     ++      K    S I+ +  + 
Sbjct: 123 TKRLRRPLVSTSANISGQPTPASFSQISPEILKGVDYVVNLHRSKKSSKPSAIIKLGNDG 182

Query: 188 KVRILR 193
            V+++R
Sbjct: 183 TVKVIR 188


>gi|26249867|ref|NP_755907.1| putative ribosome maturation factor [Escherichia coli CFT073]
 gi|26110295|gb|AAN82481.1|AE016767_241 Protein yrdC [Escherichia coli CFT073]
 gi|307555370|gb|ADN48145.1| Sua5/YciO/YrdC family protein [Escherichia coli ABU 83972]
          Length = 205

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 23  DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKRRPVDKGLILIAANYEQ 82

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 83  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198

Query: 186 EKKVR 190
            +  R
Sbjct: 199 GELFR 203


>gi|303232598|ref|ZP_07319284.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Atopobium vaginae PB189-T1-4]
 gi|302481385|gb|EFL44459.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Atopobium vaginae PB189-T1-4]
          Length = 546

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 6/206 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSR-NPTAIRRLYEIKKRPAMNPLICHVSD 66
           D   +++AC+ L     I +PT++VYG+   +  +   +RR ++IK R     L   V+D
Sbjct: 344 DPAVVKRACDCLANQGVIIVPTDSVYGIGCAATKDNPGLRRTFDIKHRDYAQTLPWLVAD 403

Query: 67  ISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            S +  +   V   +  LA  FWPG LTLV+       +     A   T   R+P     
Sbjct: 404 ASALDTYGIDVPTWAYALAHEFWPGALTLVVKANDKVGV-EYQHAATHTIALRLPNSEVV 462

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L    G PLAI SAN  G  +  +    +   +  E+ L +D G + IG  STIV+  
Sbjct: 463 RALARGCGCPLAITSANTHGSSAAVS-GDTIEPRLLDEVDLALDAGSAPIGTASTIVDCT 521

Query: 185 CEKKVRILRPGGLEIETLKRAISVEL 210
            E+  ++LR G +  E + R +S  L
Sbjct: 522 HEEP-KLLRVGAISPEDIYRVVSSAL 546


>gi|313157954|gb|EFR57360.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5]
          Length = 200

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 7/194 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              LRK  + L+ G  I  PT++VY      R+P AI RL  +K + A         +++
Sbjct: 12  ERELRKVVDALEDGGIIIYPTDSVYAFGCSLRSPKAIERLRRMKGKDAE-AFTVVFENLA 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
              ++  VD  + H+ K   PGP T VL   +++ +   +    +T   R+P     + +
Sbjct: 71  QAAEYCRVDNAAFHILKRNLPGPFTFVLT--ASSGMPDKALEKRRTIGIRIPGNAVPRVI 128

Query: 128 IETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +   G PL   S     + +  T    ++     +++ L+IDGG+    + +T+V++  +
Sbjct: 129 VAALGCPLITTSVKDDDEVVEYTTDPELIHERYGRDVALVIDGGVGD-NVPTTVVDLTGD 187

Query: 187 KKVRILRPGGLEIE 200
           +   ILR G  E++
Sbjct: 188 EP-EILREGKGELQ 200


>gi|22127897|ref|NP_671320.1| putative ribosome maturation factor [Yersinia pestis KIM 10]
 gi|21961034|gb|AAM87571.1|AE014004_9 hypothetical protein y4027 [Yersinia pestis KIM 10]
          Length = 194

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L      L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++ + +
Sbjct: 13  VLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQL 72

Query: 71  KKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           + + +    + +        WPGP+T V+   +  +     T    +   RV      ++
Sbjct: 73  EPYINDSMLNEIQRETLFSTWPGPITWVIP--ARVETPQWLTGCFDSLAVRVSNHPLVQQ 130

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG       + +        +P ++ G +      S I +    
Sbjct: 131 LCAEYGKPLVSTSANLSGHEPCRTEEEV-RIQFGPSLP-VLSGHVGGRLNPSEIRDALTG 188

Query: 187 KKVR 190
           K+ R
Sbjct: 189 KRFR 192


>gi|186681197|ref|YP_001864393.1| Sua5/YciO/YrdC/YwlC family protein [Nostoc punctiforme PCC 73102]
 gi|186463649|gb|ACC79450.1| Sua5/YciO/YrdC/YwlC family protein [Nostoc punctiforme PCC 73102]
          Length = 219

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 18/216 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I S+   N     + +    L +G  +  PT+TVY +  D    +A+ R+ +IK+    
Sbjct: 3   KIFSVHPDNPQIRRIEEIKSALSSGAVMLYPTDTVYAIGCDLNAKSAVERVRQIKQLAND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTAC 116
            PL      +S V  +A V   +  + K   PGP T +L   +T  +  L  +   K+  
Sbjct: 63  KPLTFLCPSLSNVATYAFVSDTAYRIMKRLIPGPYTFLLP--ATKLVPRLVQSPKRKSTG 120

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQ--------ISITNVKH--ILSSSICKEIPL 165
            RVP      +L+   G+P+   SA+            I    V+    L   + K + +
Sbjct: 121 IRVPNHTVCLELLAALGNPIISTSAHLPADEADNGMIRIDPETVQSRVELFDRLDKLVDI 180

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
           I+D G       STI+++  ++   I R  G E   
Sbjct: 181 IVDTGEEPTYEVSTILDMTGDEAAIIRRGLGWEAAA 216


>gi|45440104|ref|NP_991643.1| putative ribosome maturation factor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597951|ref|YP_072142.1| ribosome maturation factor [Yersinia pseudotuberculosis IP 32953]
 gi|108809218|ref|YP_653134.1| putative ribosome maturation factor [Yersinia pestis Antiqua]
 gi|108813983|ref|YP_649750.1| putative ribosome maturation factor [Yersinia pestis Nepal516]
 gi|145597487|ref|YP_001161562.1| putative ribosome maturation factor [Yersinia pestis Pestoides F]
 gi|150260706|ref|ZP_01917434.1| hypothetical protein YPE_3022 [Yersinia pestis CA88-4125]
 gi|153948235|ref|YP_001402826.1| ribosome maturation factor [Yersinia pseudotuberculosis IP 31758]
 gi|162421283|ref|YP_001605212.1| putative ribosome maturation factor [Yersinia pestis Angola]
 gi|165927892|ref|ZP_02223724.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936405|ref|ZP_02224973.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010412|ref|ZP_02231310.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213341|ref|ZP_02239376.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399680|ref|ZP_02305204.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418979|ref|ZP_02310732.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425696|ref|ZP_02317449.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468250|ref|ZP_02332954.1| putative ribosome maturation factor [Yersinia pestis FV-1]
 gi|170022581|ref|YP_001719086.1| putative ribosome maturation factor [Yersinia pseudotuberculosis
           YPIII]
 gi|186897147|ref|YP_001874259.1| putative ribosome maturation factor [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927452|ref|YP_002345327.1| putative ribosome maturation factor [Yersinia pestis CO92]
 gi|229836272|ref|ZP_04456439.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Pestoides A]
 gi|229840105|ref|ZP_04460264.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842186|ref|ZP_04462341.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904514|ref|ZP_04519625.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Nepal516]
 gi|270488268|ref|ZP_06205342.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27]
 gi|294502320|ref|YP_003566382.1| hypothetical protein YPZ3_0210 [Yersinia pestis Z176003]
 gi|81638257|sp|Q664V8|RIMN_YERPS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123245526|sp|Q1C2Y3|RIMN_YERPA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123372822|sp|Q1CCY0|RIMN_YERPN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123777794|sp|Q74XX5|RIMN_YERPE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288236|sp|A7FNJ8|RIMN_YERP3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288237|sp|B2K500|RIMN_YERPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288238|sp|A9R933|RIMN_YERPG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288239|sp|A4TH27|RIMN_YERPP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288240|sp|B1JJI2|RIMN_YERPY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|45434959|gb|AAS60520.1| Putative translation factor (SUA5) [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591233|emb|CAH22899.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777631|gb|ABG20150.1| hypothetical protein YPN_3823 [Yersinia pestis Nepal516]
 gi|108781131|gb|ABG15189.1| hypothetical protein YPA_3227 [Yersinia pestis Antiqua]
 gi|115346063|emb|CAL18929.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209183|gb|ABP38590.1| hypothetical protein YPDSF_0168 [Yersinia pestis Pestoides F]
 gi|149290114|gb|EDM40191.1| hypothetical protein YPE_3022 [Yersinia pestis CA88-4125]
 gi|152959730|gb|ABS47191.1| ribosomal modification protein RimN [Yersinia pseudotuberculosis IP
           31758]
 gi|162354098|gb|ABX88046.1| ribosomal modification protein RimN [Yersinia pestis Angola]
 gi|165915521|gb|EDR34130.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920168|gb|EDR37469.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990502|gb|EDR42803.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205639|gb|EDR50119.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962973|gb|EDR58994.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052184|gb|EDR63592.1| ribosomal modification protein RimN [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055386|gb|EDR65180.1| ribosomal modification protein RimN [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749115|gb|ACA66633.1| SUA5/yciO/yrdC domain [Yersinia pseudotuberculosis YPIII]
 gi|186700173|gb|ACC90802.1| SUA5/yciO/yrdC domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|229678632|gb|EEO74737.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Nepal516]
 gi|229690496|gb|EEO82550.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696471|gb|EEO86518.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706340|gb|EEO92347.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis Pestoides A]
 gi|262360400|gb|ACY57121.1| hypothetical protein YPD4_0212 [Yersinia pestis D106004]
 gi|262364350|gb|ACY60907.1| hypothetical protein YPD8_0217 [Yersinia pestis D182038]
 gi|270336772|gb|EFA47549.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis KIM D27]
 gi|294352779|gb|ADE63120.1| hypothetical protein YPZ3_0210 [Yersinia pestis Z176003]
 gi|320013379|gb|ADV96950.1| Sua5 YciO YrdC YwlC family protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 190

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L      L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++ + +
Sbjct: 9   VLADIVRALRQEEVIAYPTEAVFGLGCDPDSEKAVNTLLALKQRPWQKGLILVAANYAQL 68

Query: 71  KKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           + + +    + +        WPGP+T V+   +  +     T    +   RV      ++
Sbjct: 69  EPYINDSMLNEIQRETLFSTWPGPITWVIP--ARVETPQWLTGCFDSLAVRVSNHPLVQQ 126

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   YG PL   SAN SG       + +        +P ++ G +      S I +    
Sbjct: 127 LCAEYGKPLVSTSANLSGHEPCRTEEEV-RIQFGPSLP-VLSGHVGGRLNPSEIRDALTG 184

Query: 187 KKVR 190
           K+ R
Sbjct: 185 KRFR 188


>gi|332293598|ref|YP_004432207.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171684|gb|AEE20939.1| Sua5/YciO/YrdC/YwlC family protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 186

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
             A   L  G  I  PT+TV+G+  D+ NP A+ ++Y +KKR     LIC VSD  M+ +
Sbjct: 6   DAALAVLKRGGLILYPTDTVWGIGCDATNPDAVDKVYALKKRAESKSLICLVSDFKMLNQ 65

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETY 131
           +    P   +    +   P T++ D      I     A   +  FRV    F   L++ +
Sbjct: 66  YIENIPEVAYDILKYAAKPTTIIYD--DPIRIATNVIAPDNSTAFRVCRNQFCNFLLKKF 123

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+   SAN +G+ +  +   I    I     ++           S I+ +  + KV I
Sbjct: 124 RKPIVSTSANITGKPTPQSFSEISQEIIDGVDYVVNLDRDRTSTKPSAIIKLTEDGKVTI 183

Query: 192 LRP 194
           +R 
Sbjct: 184 IRE 186


>gi|313207355|ref|YP_004046532.1| translation factor sua5 [Riemerella anatipestifer DSM 15868]
 gi|312446671|gb|ADQ83026.1| translation factor SUA5 [Riemerella anatipestifer DSM 15868]
 gi|315023250|gb|EFT36260.1| Sua5 YciO YrdC YwlC family protein [Riemerella anatipestifer RA-YM]
          Length = 203

 Score =  155 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 9/195 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVSDI 67
            N +++  + LD G  I  P++TVY L  D  N  A+ +L  +KK            +D+
Sbjct: 14  ENLIKEVIKTLDNGGLIIYPSDTVYALGCDINNIKAMEKLAALKKIKLEKAHFSIICNDL 73

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           S +      +D     L K   PG  T +L+        PL+    KT   RVP     +
Sbjct: 74  SHLSSFTKPIDNSVFRLLKSHIPGAFTFILEANKNL---PLAYKGHKTVGIRVPDHPIPQ 130

Query: 127 LI-ETYGHPLAIPSANRSGQIS-ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           LI E  G P+A  S     +I   +    +++      + ++ID G     + STIV++ 
Sbjct: 131 LIVEKLGRPIASTSIKDDDEIIEYSTDPELIAEKYDHLVDIVIDSGYGD-NVASTIVDLT 189

Query: 185 CEKKVRILRPGGLEI 199
                 I+R G  E+
Sbjct: 190 S-GVAEIIRQGKGEL 203


>gi|313127651|ref|YP_004037921.1| translation factor sua5 [Halogeometricum borinquense DSM 11551]
 gi|312294016|gb|ADQ68476.1| translation factor SUA5 [Halogeometricum borinquense DSM 11551]
          Length = 208

 Score =  155 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 8/182 (4%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86
            PTETVYGL  D  +  A+ R++E+K R    PL   V D+   +++  +          
Sbjct: 23  YPTETVYGLGADGTDADAVERVFELKGRSRDKPLSIGVPDVDAAREYTRLTSFDADFMAE 82

Query: 87  FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQ 145
           F PGP+T+V++    + +  + TA       RVP              P+   SANRSG 
Sbjct: 83  FLPGPVTVVVER--GSQLPDVLTAGGDRVGVRVPDHEVALDFFRRADCPVTATSANRSGA 140

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205
            S+T+    L +++   +  +ID G +  G  ST+V+        ++   G   + ++  
Sbjct: 141 PSVTH-PDQLDATLKDSVGAVIDAGEAPGGTGSTVVDPSRN----VIHRRGAMADAIETW 195

Query: 206 IS 207
           ++
Sbjct: 196 LT 197


>gi|330823716|ref|YP_004387019.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           K601]
 gi|329309088|gb|AEB83503.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           K601]
          Length = 211

 Score =  155 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L  G  +A+PT++ Y L     +  A+ R+  +++    + L     D+S
Sbjct: 14  PRLLKQAAALLSGGGILAVPTDSSYALVCRLDDKDAVDRIRRVRQINDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +A VD     L KL  PGP T +LD         +S    KT   RVP     + L
Sbjct: 74  ELASYAHVDNRQYRLLKLATPGPYTFLLDATKEVP-RRVSHPQRKTIGLRVPDRKGLQML 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           +E +G PL   +   +G+    N    +     K+I  IID G   +   +T++++    
Sbjct: 133 LELHGTPLLATTLIPAGEAEPLNDPQEIRERYEKQIDGIIDAGACPL-EPTTVLDLTPMS 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R G   ++ L
Sbjct: 192 TGGDPVVVREGRGSLQAL 209


>gi|261338131|ref|ZP_05966015.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270276759|gb|EFA22613.1| Sua5/YciO/YrdC/YwlC family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 211

 Score =  155 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 7/210 (3%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           QI+ I +  +L    + +  G  + +PT+TVYG+A +  +  AI R++ +K+RPA   L 
Sbjct: 3   QILPI-NEESLTLVADVVSRGGIVVVPTDTVYGVACNPHDEQAIARIFAVKQRPATKSLQ 61

Query: 62  CHVSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK--TACFR 118
             ++D+  + +     P  L  L + F PG  + +  ++    +  L   +    T   R
Sbjct: 62  ILMADVQALDELGLALPTPLDRLGERFLPGAFSPIAVMVHDRGLKTLKQTSDGVLTQGVR 121

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           VP     + I     PLA  SAN+SGQ S  +V+  +++    E+ L +DGG +   + S
Sbjct: 122 VPDSDACRAILRVTGPLACSSANKSGQQSAHSVQEAVAA-FGDEVDLYVDGGPTVSHVAS 180

Query: 179 TIV--NVQCEKKVRILRPGGLEIETLKRAI 206
           T+V  +      +RI+R G L+  +++ A+
Sbjct: 181 TVVEADPNDADGIRIIREGRLDEASVRAAL 210


>gi|156548558|ref|XP_001605728.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
           vitripennis]
          Length = 266

 Score =  155 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 29/236 (12%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G  +A+PT+T+YGLA  ++N  ++ RLYEIKKR    PL   + D+  ++  A
Sbjct: 35  AAELLRNGKIVAMPTDTIYGLAGLAQNDASVARLYEIKKRDESKPLAICLWDVDDIENWA 94

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
            V+ L   L +   PGP TLVL   S+  ++P     ++    R+P   F + +++    
Sbjct: 95  HVEDLPDGLLQALLPGPTTLVLKRKSS--LNPHLNPGVENVGIRIPKYDFIRSVVKMLNQ 152

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-------ESTIVNVQCE 186
           P+A+ SAN S   S  + +     S+  E+  +       +G         ST+V++   
Sbjct: 153 PIALTSANESNAPSSLHPEE--FQSLWPELDGVF-YEKMNLGTIKESWRRGSTVVDLTVA 209

Query: 187 KKVRILRPGGLEIETL--------------KRAISVELEYCVDETSTPQSPGMLKS 228
            +  ILR G     T               K       E   DE+  P+   M   
Sbjct: 210 GQFSILRRGIGYQTTFRVLREHQLTYQKNTKNVAGQGEEDSEDESKAPEE--MKAR 263


>gi|217970101|ref|YP_002355335.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T]
 gi|217507428|gb|ACK54439.1| Sua5/YciO/YrdC/YwlC family protein [Thauera sp. MZ1T]
          Length = 207

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +R+A E L  G  +A+PT++ Y LA    +   + R+  I+     +       D+S
Sbjct: 14  ARLIRQAAEILRGGGLVALPTDSAYALACQVGDAALLDRIRRIRGVDERHHFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PGP T +L+         +     KT   RVP       L
Sbjct: 74  EIGTYARVDNSQYRLLKAVTPGPYTFILEGTKELP-RRVLHPKRKTIGLRVPEHAVVSAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +    G+    +    +   + K + L+I+ G       +T++++    
Sbjct: 133 LAEIDGPLLTSTLILPGEDLPLSDPEEIRDRLGKLVELVIEAGYCGP-EATTVIDLTSGA 191

Query: 188 KVRILRPGGLEIE 200
              ++R G   +E
Sbjct: 192 P-ELVRAGRGPLE 203


>gi|298382621|ref|ZP_06992216.1| ribosome maturation factor [Escherichia coli FVEC1302]
 gi|298276457|gb|EFI17975.1| ribosome maturation factor [Escherichia coli FVEC1302]
          Length = 205

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  +  A+ RL E+K+RP    LI   ++   
Sbjct: 23  DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSEIAVMRLLELKQRPVDKGLILIAANYEQ 82

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 83  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 141 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198

Query: 186 EKKVR 190
            +  R
Sbjct: 199 GELFR 203


>gi|329946638|ref|ZP_08294050.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526449|gb|EGF53462.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 205

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + K  + L  G  +A PT++ Y LA    N   + R+  I++    +      +D +
Sbjct: 14  ARLVEKVVDTLRDGGLVAYPTDSGYALACAPGNKEGLDRIRAIRQLDGKHNFTFVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V   A V   +  L K   PGP T +L          L+     T   R+P    T+ L
Sbjct: 74  QVGPLAIVGNNAFRLIKRLTPGPWTFILKGTKDVPRMTLNPKKH-TLGVRIPDHAITQSL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G P+   +  R GQ         +  S+   I ++I+G + + G  +T+V++  + 
Sbjct: 133 VAEFGAPILSSTFIRPGQEEPETNGWEVEESLGHLIDVVIEGPVGQ-GEPTTVVDLTDDV 191

Query: 188 KVRILRPGGLEIETL 202
              +LR G  +I  L
Sbjct: 192 P-EVLREGAGDISLL 205


>gi|325266594|ref|ZP_08133271.1| Sua5/YciO/YrdC/YwlC family protein [Kingella denitrificans ATCC
           33394]
 gi|324982037|gb|EGC17672.1| Sua5/YciO/YrdC/YwlC family protein [Kingella denitrificans ATCC
           33394]
          Length = 206

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++    +  G  + +PT+  Y L     + TA+ R+  I++    + L    +D+S
Sbjct: 14  ERLVKQVAGQIKQGKILVLPTDACYVLCCHLGDKTAMERILAIRQIDLKHHLTLLCADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +L          L     KT   RVP       +
Sbjct: 74  ELGTYAKVDNSQFRLLKAATPGAYTFILPATKEVPNRTL-HPKRKTIGLRVPDNAIALAV 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +             + +   +   + +IIDGG       +T+V++    
Sbjct: 133 LRELGEPLLSCTLMLPEDEEPLTDPYEIQDRLDHAVDIIIDGGWCGS-EPTTVVDMTDG- 190

Query: 188 KVRILRPG 195
            + ++R G
Sbjct: 191 -IELVRQG 197


>gi|119944820|ref|YP_942500.1| Sua5/YciO/YrdC/YwlC family protein [Psychromonas ingrahamii 37]
 gi|119863424|gb|ABM02901.1| translation factor SUA5 [Psychromonas ingrahamii 37]
          Length = 206

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 4/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A E L  G  I  PT++ Y L     N   + ++ +I+     +       D+S + 
Sbjct: 17  IKQAVEILKKGGVIIYPTDSGYALGCTMDNKHGLDKICQIRDLNKKHNFTLVCRDLSEIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
            +A VD  +    K   PG  T +           L     +T   R+P       L+  
Sbjct: 77  TYARVDNHAFRALKNNTPGAYTFIFKSTKDLP-KRLMNPTKRTIGIRIPNNVIALALLAE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   S    G  S       +   +  ++ LI+ GG       +T+++   +  V 
Sbjct: 136 LGEPLMTTSLILPGNTSTEFDPEDIKDKLSNQVDLIMTGGYLGES-PTTVIDFSDDD-VV 193

Query: 191 ILRPGGLEI 199
           I R G  +I
Sbjct: 194 ITRIGAGDI 202


>gi|260804901|ref|XP_002597326.1| hypothetical protein BRAFLDRAFT_203486 [Branchiostoma floridae]
 gi|229282589|gb|EEN53338.1| hypothetical protein BRAFLDRAFT_203486 [Branchiostoma floridae]
          Length = 826

 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 9/207 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ LR   + LDAG    IPT+TVY LA   ++P AI+R+Y IK RPA  P+   +S + 
Sbjct: 618 TSGLRTIADLLDAGGVCGIPTDTVYALAASCKHPEAIKRIYHIKSRPAEKPICVCISHLG 677

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHPLST--ANLKTACFRVPCG 122
            ++       PL     +  +PG ++ V+     L+   +    +      + C RVP  
Sbjct: 678 QLEAAQPGFSPLLWDFMRRCYPGGISCVVPKGDWLANLGLGDAVSYIGTSDSICIRVPDS 737

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                + +   PL I SAN SG+   T+   +LSS +  +I  ++  G S   + ST+VN
Sbjct: 738 TATAHLVSMTGPLGITSANPSGEPDSTHHDMVLSS-LGDKIDGMLCDGPSNELVASTVVN 796

Query: 183 VQ--CEKKVRILRPGGLEIETLKRAIS 207
                E  +   R G    E +++  +
Sbjct: 797 CMKIDEVGISFFRVGCTPQERVEQLFA 823


>gi|146300267|ref|YP_001194858.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacterium johnsoniae
           UW101]
 gi|146154685|gb|ABQ05539.1| translation factor SUA5 [Flavobacterium johnsoniae UW101]
          Length = 189

 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 6/192 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M   +   +  A E +  G  I  PT+TV+G+  D+ NP A+ ++Y++K+R     +I  
Sbjct: 1   MDTINQEIIN-AYEVIKEGGIILYPTDTVWGIGCDATNPEAVAKIYKLKQRAETQSMIVL 59

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122
           ++   M+       P            P TL+LD     ++     +  K+   R V   
Sbjct: 60  MNGEKMMYNVFKNIPEVAWQILDLSEKPTTLILD--DARNVAHNVISADKSLGVRLVKEP 117

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV 181
           F  KL+E    PL   SAN SGQ +  + K I    I   +  ++     K+ G  STI+
Sbjct: 118 FCYKLMERMKKPLVSTSANISGQPTPMSFKEISPEIING-VDYVVKLNQDKVAGKPSTII 176

Query: 182 NVQCEKKVRILR 193
            +  + +V+I+R
Sbjct: 177 KLTNDSQVKIIR 188


>gi|206889211|ref|YP_002248839.1| Sua5/YciO/YrdC/YwlC family protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741149|gb|ACI20206.1| Sua5/YciO/YrdC/YwlC family protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 199

 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 11/203 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN-- 58
           M+I+   + + + +  + L+    I  PTET+YG+ V   +   +R+L+EIKKRP     
Sbjct: 1   MKIVKAEEIDII-EVLKILENDGIIIYPTETLYGIGVKYDSKKLLRKLFEIKKRPEEKSF 59

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PLI ++  + ++ +   +  ++    + +WPGPLTL+L         P           R
Sbjct: 60  PLIVNLQHLDLITEF--IPSIAKKFIEKYWPGPLTLLLPAKKNL---PKRITKDNKIAVR 114

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P   F  KLI+    P+   SAN SG  +   ++ ++       I L+IDGG    G+ 
Sbjct: 115 MPGESFALKLIQLSQFPITATSANISGYPAADCIETVMKYFKDSFIDLLIDGGKLP-GIP 173

Query: 178 STIVNVQCEKKVRILRPGGLEIE 200
           STIV+   +   +++R G +E++
Sbjct: 174 STIVDATVD-PPQLIRKGAIEVD 195


>gi|88607846|ref|YP_505359.1| Sua5/YciO/YrdC/YwlC family protein [Anaplasma phagocytophilum HZ]
 gi|88598909|gb|ABD44379.1| Sua5/YciO/YrdC/YwlC family protein [Anaplasma phagocytophilum HZ]
          Length = 200

 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 7/197 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L     +  PTET+Y LA ++ +  A+ +LY+IK+R    P    + DI  VK
Sbjct: 2   VEEIVNALRNEEIVCFPTETLYALACNAFSERAVAKLYDIKRRLYDKPFSLMLGDIQQVK 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           K +++    L + ++  PGP+T +L L    ++         T   R+P       ++  
Sbjct: 62  KFSNMKNTDLRIMEMLSPGPITFILPLHYAQNLPRRFF--KDTLGVRIPDHALACNILSR 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +  P+   SAN SG+         +   +   +  + +   S  G+ ST+ ++  +   +
Sbjct: 120 FEFPVVATSANLSGERDALKASD-IPEELRMHVSKLWEDDSSVSGMCSTVFDMVSQ---K 175

Query: 191 ILRPGGLEIETLKRAIS 207
           ILR G L    +  AI+
Sbjct: 176 ILRTGMLPSSKILDAIN 192


>gi|237714415|ref|ZP_04544896.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262408246|ref|ZP_06084793.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643621|ref|ZP_06721424.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a]
 gi|294806130|ref|ZP_06764982.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC
           1b]
 gi|229445579|gb|EEO51370.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353798|gb|EEZ02891.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641055|gb|EFF59270.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CC 2a]
 gi|294446644|gb|EFG15259.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides xylanisolvens SD CC
           1b]
          Length = 187

 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++ P   A   +   RV    F+++L
Sbjct: 63  VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFSRRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I+      +     S+I+ ++ 
Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGFRQDDMNKPKPSSIIKLEK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|330500990|ref|YP_004377859.1| SUA5/YciO/YrdC domain-containing protein [Pseudomonas mendocina
           NK-01]
 gi|328915276|gb|AEB56107.1| SUA5/YciO/YrdC domain-containing protein [Pseudomonas mendocina
           NK-01]
          Length = 185

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 72/187 (38%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  +  +++    +  G  IA PTE V+GL  D  N  A+ RL  +K+RP    LI    
Sbjct: 1   MASNWQIQQTARVVREGGVIAYPTEAVWGLGCDPWNEEAVDRLLALKERPMHKGLIVVAD 60

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           DI       +  P          WPGP T ++       +    T    T   RV     
Sbjct: 61  DIEQFDFLLNDLPDVWQERLAGSWPGPNTWLVPHQ--NRLPEWVTGEHDTVALRVSDHPL 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +  Y  PL   SAN +G+ S  +   +       E+  ++ G +      S I +++
Sbjct: 119 VRALCRYTGPLISTSANPAGRPSARSRLRV-EQYFPGELDKVLGGALGGRKNPSLIRDLR 177

Query: 185 CEKKVRI 191
               +R 
Sbjct: 178 TGDVIRP 184


>gi|255535332|ref|YP_003095703.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium
           3519-10]
 gi|255341528|gb|ACU07641.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium
           3519-10]
          Length = 205

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 13/206 (6%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I       N + +  + L  G  I  P++TVY L  +  +  A+ +L +IKK    
Sbjct: 5   KILKIYPNNPQENLIDEVVKTLQNGGIIIYPSDTVYALGCNIFDIRAMEKLAQIKKIKLE 64

Query: 58  NP-LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
                   +D+  +      +D       K   PGP T +L+   +    PL+    KT 
Sbjct: 65  KAQFSIICNDLGHLSGFTRPIDTPVFRFLKSKIPGPFTFILEAGKSL---PLAYKGNKTV 121

Query: 116 CFRVPCGFTKKLI-ETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISK 173
             RVP     +LI E  GHP+A  S     + I  +    +++      + ++ID G   
Sbjct: 122 GIRVPDHVIPQLIVEKLGHPIASTSVKDDDEVIEYSTDPELIAEKYDNLVDIVIDSGYGD 181

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEI 199
             + STIV++   +   I+R G  E+
Sbjct: 182 -NVASTIVDLTSGEP-EIVRQGKGEV 205


>gi|298493014|ref|YP_003723191.1| Sua5/YciO/YrdC/YwlC family protein ['Nostoc azollae' 0708]
 gi|298234932|gb|ADI66068.1| Sua5/YciO/YrdC/YwlC family protein ['Nostoc azollae' 0708]
          Length = 219

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 79/202 (39%), Gaps = 14/202 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +      L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V 
Sbjct: 17  IEDIKLALSSGAIMLYPTDTVYAIGCDLNAKSAVERVRQIKQLGNDKPLTFLCPSLSNVA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FTKKLIE 129
            +A V  ++  + K   PG  T +L   +T  +  L      KT   RVP       L+E
Sbjct: 77  TYAFVSDIAYRIMKRLIPGSYTFLLP--ATKLVPRLVQNPKRKTTGIRVPDHTVCLALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKH----------ILSSSICKEIPLIIDGGISKIGLEST 179
             G+P+   SA+   +     +             L       + +IID G       ST
Sbjct: 135 ALGNPIISTSAHLPPKDIDYEIAELDSENIMSRVELFDRWDNLVDIIIDTGEEPTYHVST 194

Query: 180 IVNVQCEKKVRILRPGGLEIET 201
           I+++  E+ V   R  G E   
Sbjct: 195 ILDLTDEEPVITRRGLGWEAAA 216


>gi|50084077|ref|YP_045587.1| hypothetical protein ACIAD0865 [Acinetobacter sp. ADP1]
 gi|49530053|emb|CAG67765.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 211

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A E + AG  +  PT+  Y +     N +A+ R+ +I+     +       D+S
Sbjct: 19  ARLINQAVERIRAGDVVVYPTDAAYSIGCQIGNKSAMERIAQIRGLGPKHQYAIMCCDLS 78

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 79  DIATYAKVDNAMYRLLKANTPSITTFILPATSEVP-KRLMHPKKKTIGLRIPTNPICQAL 137

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   +    GQ    +  + + + + K + + IDGG   +   S IV++  E 
Sbjct: 138 LQELGEPILTSTLILPGQSDPLDDPYDIENQLGKRVDVFIDGGFGTLSTTS-IVDLSGEN 196

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  ++   +
Sbjct: 197 P-EVVRHGAGDVSAFE 211


>gi|255612074|ref|XP_002539379.1| Protein yrdC, putative [Ricinus communis]
 gi|223506727|gb|EEF23004.1| Protein yrdC, putative [Ricinus communis]
          Length = 188

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + + KA + +  G  I  PT+T++G+  D+ N  AI++++++K+R     +I  +   + 
Sbjct: 4   DEVEKALKVIQDGGIILYPTDTIWGVGCDATNTEAIKKIFKLKQRDEAKSMIILLDTENK 63

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           ++ +    P   +    +   PLTLV+      +I P   A   +   RV    F ++LI
Sbjct: 64  LESYVKEVPAVAYDLIEYAENPLTLVMPGAK--NISPALIAADGSVGIRVSSHQFCQQLI 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCE 186
           +    P+   SAN SG  S  N   I    I   +  ++D     +     STI+ ++ +
Sbjct: 122 QRLRKPIVSTSANISGSPSPQNFSEIAQEIIDG-VDYVVDLDQHDLSKKKPSTIMRIEPD 180

Query: 187 KKVRILRP 194
            +   +R 
Sbjct: 181 GRFEFIRR 188


>gi|226329519|ref|ZP_03805037.1| hypothetical protein PROPEN_03428 [Proteus penneri ATCC 35198]
 gi|225202705|gb|EEG85059.1| hypothetical protein PROPEN_03428 [Proteus penneri ATCC 35198]
          Length = 189

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 8/180 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
             E L     IA PTE V+G+  D  +  A+  L  +K+R     LI    +   +K + 
Sbjct: 12  IIEALKNNKVIAYPTEAVFGVGCDPDSEQAVMALLMLKQRSIEKGLILIADNYGQLKPYI 71

Query: 75  SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
               L+          WPGP+T V+   STT      T    +   RV      K+L   
Sbjct: 72  DDSALTQTQRDRMFASWPGPVTWVIPAKSTT--PKWLTGKFDSLAVRVTDHSVVKELCLA 129

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           YG PL   SAN SG      V+ +        IP I++G +      S I +    +  R
Sbjct: 130 YGKPLVSTSANLSGLPPCRTVEEV-REQFEDTIP-IVEGNVGGRQNPSEIRDALTGELYR 187


>gi|17227697|ref|NP_484245.1| hypothetical protein alr0201 [Nostoc sp. PCC 7120]
 gi|17135179|dbj|BAB77725.1| alr0201 [Nostoc sp. PCC 7120]
          Length = 219

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 20/215 (9%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+++   N     + +    L +G  +  PT+TVY +  D    +A+ R+ +IK+    
Sbjct: 3   KIIAVHPDNPQSRRIEEIRSALSSGAVMLYPTDTVYAIGCDLNVKSAVERVRQIKQLAND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTAC 116
            PL      +S V  +A V   +  + K   PG  T +L   +T  +  L  +   KT  
Sbjct: 63  KPLTFLCPSLSNVATYAFVSDTAYRIMKRLIPGTYTFLLP--ATKLVPRLVQSPKRKTTG 120

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQ-----------ISITNVKHILSSSICKEIP 164
            RVP       L+E  G+P+   SA+                SIT++   L   + K + 
Sbjct: 121 IRVPNHTVCLALLEALGNPIISTSAHIPPDEAGNGKVGIISESITSMVE-LFDRVDKLVD 179

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           +I+D G       STIV++  ++ +   +  G E 
Sbjct: 180 VIVDTGQEPTYDVSTIVDLTGDEPMITRQGLGWEA 214


>gi|189463821|ref|ZP_03012606.1| hypothetical protein BACINT_00154 [Bacteroides intestinalis DSM
           17393]
 gi|189438771|gb|EDV07756.1| hypothetical protein BACINT_00154 [Bacteroides intestinalis DSM
           17393]
          Length = 187

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+T++G+  D+ N  A+RR+Y+IK+R     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTIWGIGCDATNEEAVRRVYQIKQRSDSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++     A   +   RV    F+K L
Sbjct: 63  VDFYVQDVPEVAWDLIEVA-DKPLTIIYS--GARNLASNLIAEDGSVGIRVTNEEFSKHL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ S  N    ++  +   +  ++     ++G    S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANISGQPSPANYSE-ITEELKSMVDYVVGYRQEEMGHPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|15606072|ref|NP_213449.1| hypothetical protein aq_651 [Aquifex aeolicus VF5]
 gi|2983259|gb|AAC06854.1| hypothetical protein aq_651 [Aquifex aeolicus VF5]
          Length = 198

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 14/204 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL++A E L  G  I  PT+T+YG+  D+ N  A++RLY+I +RP+  P +  + D S
Sbjct: 7   KEALKEAVEILKKGGIIVAPTDTLYGILADATNEEAVKRLYKI-RRPSGKPFLVLLPDES 65

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            ++K    V      L K+     LTLV     T D     +    T   R+P  GF + 
Sbjct: 66  WLEKLCLDVKEEHKKLLKV---EGLTLVF--RKTCDKLDYVSKG--TLAVRLPQKGFIRD 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+     P+  PS N  G+    +V+   +     ++ L ID G+ K G  STI+++   
Sbjct: 119 LLSELKKPVVAPSVNPEGKKPAESVEEAYN-YFGNKVDLYIDAGVIK-GEPSTILDLTEG 176

Query: 187 KKVRILRPGGLEIETLKRAISVEL 210
             V+ILR G ++ E +++ ++ +L
Sbjct: 177 --VKILREGKVKKEEIEKILNRKL 198


>gi|242239361|ref|YP_002987542.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech703]
 gi|242131418|gb|ACS85720.1| Sua5/YciO/YrdC/YwlC family protein [Dickeya dadantii Ech703]
          Length = 206

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + ++ + L  G  I  PT++ Y L     + TA+ R+  I+     +       D+S
Sbjct: 14  PRLIGQSVDILRKGGVIVYPTDSGYALGCMLEDKTAMERICRIRNLDQHHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   PG  T +L          L     KT   RVP      +L
Sbjct: 74  ELSSYAYVDNAAFRLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGMRVPSNPIALEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+   +    G     +    +   + K++ L+I GG       +T++++  E 
Sbjct: 133 LAALNAPMMSTTLMLPGNDFAESDPEEIQEHLGKQVDLVIHGGFLGQ-QPTTVIDLT-EP 190

Query: 188 KVRILRPG 195
             +++R G
Sbjct: 191 APQVVRDG 198


>gi|302869593|ref|YP_003838230.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315503945|ref|YP_004082832.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5]
 gi|302572452|gb|ADL48654.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315410564|gb|ADU08681.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5]
          Length = 214

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 6/199 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A E +  G  + +PT+TVYG+  D+  P A++ L + K   A       +    
Sbjct: 12  DRGIAAAIEAVKNGELVVLPTDTVYGIGADAFTPYAVKALADTKG-GARQAPPVLIGSRH 70

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +     S+   +  L + FWPG LT+V++   +  +      +  T   R+P       
Sbjct: 71  TLDGLVFSLPGAARDLVEAFWPGALTIVVEHSPS--LAWDLGDSSGTVAVRMPLHPVALE 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN+ GQ +    +      +   +   ++ G +   + STIV++  + 
Sbjct: 129 VLRETGPMAVASANKIGQPAALTAEEA-RDQLGYGVRAYLEAGPAVDPVPSTIVDLTGDV 187

Query: 188 KVRILRPGGLEIETLKRAI 206
             R+LR G + +  L+  +
Sbjct: 188 P-RVLREGAVTLAKLREVV 205


>gi|163857789|ref|YP_001632087.1| putative translation factor [Bordetella petrii DSM 12804]
 gi|163261517|emb|CAP43819.1| putative translation factor [Bordetella petrii]
          Length = 207

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A ++L+ G  +A+PT++ Y +A    +  A   L  ++     + L     D++
Sbjct: 14  PRLLKQAAQWLNDGGLVAVPTDSSYAVAAHLDDKAAADALRRLRGLDERHHLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP T +L+         +S  + KT   RVP    T  L
Sbjct: 74  EIGHFARVDNRQYRLLKAATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPQHAVTLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    N    +      ++  IID G       +T++++  ++
Sbjct: 133 LEQVGAPLLSTTLIPKGEDDALNDAEDIRDRYAHDLAAIIDAGACPQS-PTTVIDLTGDE 191

Query: 188 KVRILRPGG 196
              + R  G
Sbjct: 192 PAVLRRGRG 200


>gi|62751448|ref|NP_001015837.1| yrdC domain containing [Xenopus (Silurana) tropicalis]
 gi|58476879|gb|AAH90125.1| yrdC domain containing [Xenopus (Silurana) tropicalis]
          Length = 238

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  IA+PT+T+YG+A  ++N  +I  +Y +K R    PL   V ++  + ++  V 
Sbjct: 39  ILQQGGVIAVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVDDIYRYCQVR 98

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
            +   L +   PGP+TLV++   +  ++            R+P   F ++L E    PLA
Sbjct: 99  -VPDQLLRDLLPGPVTLVMER--SDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLA 155

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVR 190
           + SAN S Q S   V+      +  ++ L++DGG        +  L ST+V++    K  
Sbjct: 156 LTSANISSQDSTLTVEE--FRDLWPKLSLVVDGGPIGELSSPECRLGSTVVDLSVPGKFT 213

Query: 191 ILRPGG 196
           ++R G 
Sbjct: 214 VIRDGC 219


>gi|319764020|ref|YP_004127957.1| sua5/ycio/yrdc/ywlc family protein [Alicycliphilus denitrificans
           BC]
 gi|317118581|gb|ADV01070.1| Sua5/YciO/YrdC/YwlC family protein [Alicycliphilus denitrificans
           BC]
          Length = 211

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L  G  +A+PT++ Y L     +  A+ R+  +++    + L     D+S
Sbjct: 14  PRLLKQAAALLSGGGILAVPTDSSYALVCRLDDRDAVDRIRRVRQINDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +A VD     L KL  PGP T +LD         +S    KT   RVP     + L
Sbjct: 74  ELASYAHVDNRQYRLLKLATPGPYTFLLDATKEVP-RRVSHPQRKTIGLRVPDRKGLQML 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           +E +G PL   +   +G+    N    +     K+I  IID G   +   +T++++    
Sbjct: 133 LELHGTPLLATTLIPAGETEPLNDPQEIRERYEKQIDGIIDAGACPL-EPTTVLDLTPMS 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R G   ++ L
Sbjct: 192 TGDDPVVVREGRGSLQAL 209


>gi|255326263|ref|ZP_05367349.1| translation factor SUA5 [Rothia mucilaginosa ATCC 25296]
 gi|255296717|gb|EET76048.1| translation factor SUA5 [Rothia mucilaginosa ATCC 25296]
          Length = 395

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 25/232 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A E L A   I +PT+TVYG+A D+ +   + +L   K R    P    + D++ 
Sbjct: 16  EAIEAAREALKAHDTIVMPTDTVYGIAADAFSHQGVAKLLADKGRDRTMPPPVLIFDLAA 75

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +       P     L   FWPG LT++L    +  +         T   RVP   F  KL
Sbjct: 76  LAGVVDDVPDDIYDLGGRFWPGALTMILHAYPS--LSWDLGETRGTVAVRVPDDEFALKL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG---------ISKIGL-- 176
           +  +G PLA+ SAN++GQ +  + +  +  S+ +++ ++IDGG          ++ G+  
Sbjct: 134 LTEHG-PLAVSSANKTGQEAALDAQTAM-DSLGEDVAVVIDGGARPKPLESEPNEDGVVV 191

Query: 177 -------ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221
                   STI++        ++R G + +E L+  +   L     +    +
Sbjct: 192 VTERDPAPSTILDCTS-FPYVVVREGAISVEELREVVPTILTRAEADEQAAR 242


>gi|85057289|ref|YP_456205.1| translation factor SUA5 protein [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789394|gb|ABC65126.1| translation factor SUA5 protein [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 196

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 6/183 (3%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
            I  PT+TVYG+     +   +  +Y+IKKRP    ++   S +   KK     P +L L
Sbjct: 6   IIIFPTDTVYGMGAKLYDKKGLNYIYQIKKRPLNKSIVVLCSSLQQAKKLVQFSPQNLKL 65

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A  FWPGPLT VL   S       S    KT   R+P       I     PL   S N+S
Sbjct: 66  ALHFWPGPLTFVLPTTSK----YFSKTKEKTLGVRIPNHPLTLEILKKNGPLKTTSVNQS 121

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
                 N    + +    ++ LI       + + STIV++   + V ILR G +  E + 
Sbjct: 122 NHP-PLNDYQTIFNIYHNKVALIYKNYHPILKISSTIVDLTTFQPV-ILRQGTITQEEIS 179

Query: 204 RAI 206
             I
Sbjct: 180 SQI 182


>gi|148652264|ref|YP_001279357.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. PRwf-1]
 gi|148571348|gb|ABQ93407.1| translation factor SUA5 [Psychrobacter sp. PRwf-1]
          Length = 206

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 8/209 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ + I   N     + +  + L+    I  PT+T Y       +  AI +L  I++   
Sbjct: 1   MQTLYIHPENPQPRLISQTVDALNRDQLIVYPTDTSYAFGCKIGSKEAIEKLRLIRQLDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +       D+S +  +A+VD     L K   P P+T +LD         LS    KT  
Sbjct: 61  KHQFTLLCRDLSEIATYATVDNQQFKLLKASTPAPITFILDATKDVP-KKLSHPKKKTIG 119

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + L+E  G P+   S          +    +   +   I ++I+ G+    
Sbjct: 120 IRVPSNPIAQMLLEAMGEPILTSSLILLSTPLALDDPFDIEDKLGNNIDVMINAGVLTTK 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKR 204
           L +TIV++      +++R G  +   +  
Sbjct: 180 L-TTIVDMTV-FPPQLVRQGAGDASQILE 206


>gi|258652314|ref|YP_003201470.1| Sua5/YciO/YrdC/YwlC family protein [Nakamurella multipartita DSM
           44233]
 gi|258555539|gb|ACV78481.1| Sua5/YciO/YrdC/YwlC family protein [Nakamurella multipartita DSM
           44233]
          Length = 216

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 96/212 (45%), Gaps = 9/212 (4%)

Query: 1   MQIMSITDS----NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M     +D       L  A     +G  + +PT+TVYG+  D+ N  A+R L   K R  
Sbjct: 1   MTTFDCSDPIERRAGLEAAAHAATSGHLVVLPTDTVYGIGADAFNAAAVRALLAAKGRGP 60

Query: 57  MNPLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P+   V   + +     +V P++  L + FWPG L+LV++   +            T 
Sbjct: 61  DMPVPVLVGSWTTIDGLVMAVPPVARTLVEAFWPGGLSLVVEHAPSLQW--DLGDAKGTV 118

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P       +     P+A+ SANRSG            + + +++ + +DGG S IG
Sbjct: 119 MLRMPLHPVAIDLLRLVGPMAVSSANRSGNP-PATTAADAQAQLGEQVSVYLDGGPSPIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           + ST+V+V  E   R+LR G + ++ L+  + 
Sbjct: 178 VASTVVDVTGEIP-RVLRVGAVPLDRLRDVVG 208


>gi|262375678|ref|ZP_06068910.1| yrdC domain-containing protein [Acinetobacter lwoffii SH145]
 gi|262309281|gb|EEY90412.1| yrdC domain-containing protein [Acinetobacter lwoffii SH145]
          Length = 205

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A E + AG  +  PT+  Y +     N +A+ R+ +I+     +       D+S
Sbjct: 13  PRLISQAVERIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGPKHQYAILCCDLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNAMYRLLKNNTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPNNPVCQML 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    GQ    +  + +   + K I + +D G+  +   S IV++  + 
Sbjct: 132 LKELGEPLLTSTLILPGQTDPLDDPYDIEMQLGKRIDVFVDSGLGTLSTTS-IVDLSGDH 190

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  ++   +
Sbjct: 191 P-EVMRRGMGDVSAFE 205


>gi|259909962|ref|YP_002650318.1| Putative DNA topoisomerase, fragment [Erwinia pyrifoliae Ep1/96]
 gi|224965584|emb|CAX57116.1| Putative DNA topoisomerase, fragment [Erwinia pyrifoliae Ep1/96]
          Length = 181

 Score =  154 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D   + 
Sbjct: 1   MAQCVEQLAQSQVIAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGLILIAADYQQLI 60

Query: 72  KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
              + + L +   A++F  WPGP+T VL   STT      T    T   RV        L
Sbjct: 61  PWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGQFTTLAVRVSDHPDVIAL 118

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G     +V  +L +    + P ++ G        S I +V   +
Sbjct: 119 CHAFGKPLVSTSANLTGLPPCRHVAEVL-AQFGPDFP-VLKGETGGRLNPSEIRDVLTGE 176

Query: 188 KVR 190
            +R
Sbjct: 177 LIR 179


>gi|262373289|ref|ZP_06066568.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262313314|gb|EEY94399.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 205

 Score =  154 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 8/208 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + I   N     + +A + + AG  +  PT+  Y +     N  A+ R+ +I+    
Sbjct: 1   MLHLHIHPENPQARLITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +       D+S +  +A VD     L K   P   T +L   S      L     KT  
Sbjct: 61  KHQYAIMCCDLSDIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVP-KRLMHPKKKTIG 119

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + L++  G PL   +     Q    +  + + + + K I + IDGG   + 
Sbjct: 120 LRIPSNPIAQALLKELGEPLLTSTLILPDQTEPLDDPYDIENQLGKRIDVFIDGGFGTLS 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203
             S IV++  E    I+R G  ++   +
Sbjct: 180 TTS-IVDLSGENP-EIVRRGVGDVSAFE 205


>gi|325068851|ref|ZP_08127524.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces oris K20]
          Length = 205

 Score =  154 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + K  + L  G  +A PT++ Y LA    N   + R+  I++    +      +D  
Sbjct: 14  ARLVEKVVDTLRDGGLVAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFG 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V   A V   +  L K   PGP T +L          L+     T   R+P    T+ L
Sbjct: 74  QVGPLAIVGNNAFRLIKRLTPGPWTFILKGTKDVPRMTLNPKKH-TLGVRIPDHAITQSL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G P+   +  R GQ         +  S+   I ++I+G + + G  +T+V++  + 
Sbjct: 133 VAEFGAPILSSTFIRPGQEEPETNGWEIQDSLGHLIDVVIEGPVGQ-GEPTTVVDLTDDV 191

Query: 188 KVRILRPGGLEIETL 202
              +LR G  +I  L
Sbjct: 192 P-EVLREGAGDISLL 205


>gi|15668233|ref|NP_247026.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2500922|sp|Q60369|Y062_METJA RecName: Full=Uncharacterized protein MJ0062
 gi|1498824|gb|AAB98044.1| hypothetical protein MJ_0062 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 207

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 14/210 (6%)

Query: 2   QIMSIT--DSNALRKACEFLD----AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP 55
           +I+ I   +    +K  EFL      G  +   T+T+YG++ ++ N  A+R++Y IK+R 
Sbjct: 6   KIIKIYELNEEERKKVLEFLKKEILNGKIVICGTDTLYGISANALNEKAVRKVYNIKRRE 65

Query: 56  AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
              PL   V D + ++K+A V+ L+  +   F PGPLT++L       I  +        
Sbjct: 66  FNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLPGPLTIILKKKPG--IPDIV--AKDYI 121

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             R+P     +  E    PL   SAN SG+ S T V  I    + K++  +ID G  K  
Sbjct: 122 GIRIPDEPIIR--ELSIVPLTTTSANISGKESPTTVDEIDKEVL-KKVDYVIDIGKCKYS 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRA 205
             ST +    + K+  +R G + I+ L R 
Sbjct: 179 KPST-IIKIEDDKIISIREGVIPIQKLARC 207


>gi|330806735|ref|YP_004351197.1| hypothetical protein PSEBR_a71 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374843|gb|AEA66193.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 185

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    
Sbjct: 1   MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVERLLAIKSRLPDKGLILVAD 60

Query: 66  DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I          P +        WPGP T ++       +    T    T   RV    T
Sbjct: 61  NIHQFDFLFEDFPDTWMDRMASTWPGPNTWLVPHQ--NLLPEWITGVHDTVALRVSDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + + +   PL   SAN  G+ +      +       +I L++ G +      S I ++ 
Sbjct: 119 VRDLCSLVGPLVSTSANPQGRPAARTRIRV-EQYFRGQIDLVLGGNLGGRKNPSVIRDLA 177

Query: 185 CEKKVRI 191
             K VR 
Sbjct: 178 TGKVVRP 184


>gi|331654875|ref|ZP_08355874.1| protein YrdC [Escherichia coli M718]
 gi|331046890|gb|EGI18968.1| protein YrdC [Escherichia coli M718]
          Length = 205

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 23  DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 82

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 83  LKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 140

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 141 ALCQAYGKPLVSTSANLSGLAPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 198

Query: 186 EKKVR 190
            +  R
Sbjct: 199 GELFR 203


>gi|253574245|ref|ZP_04851587.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846722|gb|EES74728.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 174

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79
           +G  +A PTETVYGL  D+RN  A+  ++  K RP+ NPLI H++D+S +      V+  
Sbjct: 65  SGGTVAFPTETVYGLGADARNTAAVEAIFAAKGRPSDNPLIVHIADVSQLDGLVTEVNET 124

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +  L + FWPGPLTLVL +     + P  TA L T   R+P      +LI 
Sbjct: 125 ARRLMEAFWPGPLTLVLPVSEGA-VSPRVTAGLSTVGVRMPAHDVALRLIA 174


>gi|308233417|ref|ZP_07664154.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Atopobium vaginae DSM 15829]
 gi|328944391|ref|ZP_08241853.1| protein-(glutamine-N5) methyltransferase [Atopobium vaginae DSM
           15829]
 gi|327490975|gb|EGF22752.1| protein-(glutamine-N5) methyltransferase [Atopobium vaginae DSM
           15829]
          Length = 526

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 6/203 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSR-NPTAIRRLYEIKKRPAMNPLICHVSD 66
           D   + KA + L     I  PT++VYG+   +  +  A +R +EIK R     L   + D
Sbjct: 324 DPQIIDKAVDVLAHEGVIITPTDSVYGIGCVALPHNAAHKRTFEIKHRDLRQTLPWLIGD 383

Query: 67  ISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            S + ++A  V   +  LA  FWPG LTLV+             A+ KT   R+P     
Sbjct: 384 ESDLMRYAVDVPAWAQKLAHTFWPGALTLVVKACDDVP-QEYVHADNKTIALRLPDSNVV 442

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L      PLAI SAN  G  +  +    L   +  E+ L++D G + + + STIV+  
Sbjct: 443 RALARKLSCPLAITSANTHGADAAISGAT-LEDRLIDEVDLVLDAGSAPLAVASTIVDCT 501

Query: 185 CEKKVRILRPGGLEIETLKRAIS 207
            +   +ILR G ++   +  A+S
Sbjct: 502 -QSTPKILRIGAIDPHDIMEALS 523


>gi|313667824|ref|YP_004048108.1| hypothetical protein NLA_4790 [Neisseria lactamica ST-640]
 gi|313005286|emb|CBN86719.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 234

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 77/189 (40%), Gaps = 5/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+  E ++ G  +  PT++ Y L     +  A+ R+  I+K    + L    +D+S
Sbjct: 42  ERLIRQVVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKIDLKHHLTLMCADLS 101

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A++D +     K   PGP T +L          L     KT   R+P     + L
Sbjct: 102 ELGTYAAIDNVQFRQLKAATPGPYTFILQATKDVPARTL-HPKRKTIGLRIPGNAVAQAL 160

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +             + +   +   + L+IDGG       +T++++    
Sbjct: 161 LEELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTD-PATVIDMTDGT 219

Query: 188 KVRILRPGG 196
           ++  +R G 
Sbjct: 220 EL--VRRGC 226


>gi|56459134|ref|YP_154415.1| Sua5 family translation factor [Idiomarina loihiensis L2TR]
 gi|81362897|sp|Q5QXJ5|RIMN_IDILO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|56178144|gb|AAV80866.1| Possible translation factor, Sua5/YciO/YrdC/YwlC family [Idiomarina
           loihiensis L2TR]
          Length = 186

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 12/185 (6%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
             A   +  G  IA PTE V+GL  D RN  A+++L  +K+RPA   LI   +D S +  
Sbjct: 6   EAAHSAIKTG-IIAYPTEAVFGLGCDPRNEVAVQKLLSLKQRPAEKGLILIAADYSQLLP 64

Query: 73  HASVDPLSLHLAKLF-----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +     ++    K F     WPGP+TL+L +     +  L T    T   RV      + 
Sbjct: 65  YVEDSAIAQD--KRFSVLSHWPGPVTLILPVRK--GVSTLLTGGRDTIAVRVTAHEPARA 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L    GH L   SAN +GQ        +        +  I+D         + I+N    
Sbjct: 121 LCRELGHALVSTSANLTGQEPARTAAEV-RQQFGDSVDWIMDESTGGAANPTRIINPLNN 179

Query: 187 KKVRI 191
           +  R 
Sbjct: 180 QVFRD 184


>gi|53803488|ref|YP_114629.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str.
           Bath]
 gi|53757249|gb|AAU91540.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str.
           Bath]
          Length = 207

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E +  G  I  PT++ Y          A+ R+  I++    +       D+S
Sbjct: 14  QRLIRQAAEIVRQGGVIVYPTDSSYAFGCQLDRKDALHRIRTIRQLDEEHNFTLICHDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V   A ++  +  L K   PGP T +L+         L     KT   R+P    ++ L
Sbjct: 74  QVSAFARINNEAFRLIKTLTPGPYTFLLEATREVP-RRLQHPKRKTIGIRLPDNAVSQML 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   + LI+  G+     E+TIV++  E 
Sbjct: 133 VAELGEPLFSSTLILPGETEGLADPEDIRERVGTRVELILAAGVIPFA-ETTIVDLTGEF 191

Query: 188 KVRILRPGG 196
            V + +  G
Sbjct: 192 PVIVRQGKG 200


>gi|78049489|ref|YP_365664.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925733|ref|ZP_08187108.1| translation factor SUA5 [Xanthomonas perforans 91-118]
 gi|123584024|sp|Q3BNJ9|RIMN_XANC5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|78037919|emb|CAJ25664.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543861|gb|EGD15269.1| translation factor SUA5 [Xanthomonas perforans 91-118]
          Length = 187

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 7/190 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  L +A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S
Sbjct: 1   MTDTLDLDRAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIKRRPVEKGVIVVAS 60

Query: 66  DISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + +++    +D   P         WPGP T +L +  T       T        R+   
Sbjct: 61  SVDLLRDWVDIDALEPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L   +G PL   SAN +G+    + +  L  ++   I  ++DG    +   + I 
Sbjct: 119 PVVAALCAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177

Query: 182 NVQCEKKVRI 191
           + +  + +R 
Sbjct: 178 DARSGQILRD 187


>gi|329295658|ref|ZP_08252994.1| SUA5/yciO/yrdC domain-containing protein [Plautia stali symbiont]
          Length = 191

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L    E L     IA PTE V+GL  D  + +A+  L  +K+RP    LI   +D +
Sbjct: 8   PGSLDFCIEQLQQQQVIAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYA 67

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            ++ + +   L+          WPGP+T V+     T   P  T    +   RV      
Sbjct: 68  QLEPYIADRELTVLQRERMFASWPGPVTYVVPASPHT--PPWLTGRFDSLAIRVSDNPQV 125

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +G PL   SAN +GQ    +   + +     + P ++          S I +  
Sbjct: 126 QALCRGFGKPLVSTSANLTGQPPCRSAAEV-AEQFGSQFP-VLQAATGGRLNPSEIRDAI 183

Query: 185 CEKKVR 190
             + +R
Sbjct: 184 SGELIR 189


>gi|283458330|ref|YP_003362951.1| putative translation factor [Rothia mucilaginosa DY-18]
 gi|283134366|dbj|BAI65131.1| putative translation factor [Rothia mucilaginosa DY-18]
          Length = 424

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 101/232 (43%), Gaps = 25/232 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A E L A   I +PT+TVYG+A D+ +   + +L   K R    P    + D++ 
Sbjct: 45  EAIEAAREALKAHDTIVMPTDTVYGIAADAFSHQGVAKLLADKGRDRTMPPPVLIFDLAA 104

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +      V      L   FWPG LT++L    +  +         T   RVP   F  KL
Sbjct: 105 LAGVVDDVPNDIYDLGGRFWPGALTMILHAYPS--LSWDLGETRGTVAVRVPDDEFALKL 162

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG---------ISKIGL-- 176
           +  +G PLA+ SAN++G  +  + +  +  S+ +++ ++IDGG          ++ G+  
Sbjct: 163 LTEHG-PLAVSSANKTGHEAALDAQTAM-DSLGEDVAVVIDGGARPKPLESEPNEDGVVV 220

Query: 177 -------ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221
                   STI++        ++R G + +E L+  +   L     +    +
Sbjct: 221 VTERDPAPSTILDCTS-FPYVVVREGAISVEELREVVPTILTRAEADEQAAR 271


>gi|37528509|ref|NP_931854.1| putative ribosome maturation factor [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|81418038|sp|Q7MYI5|RIMN_PHOLL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|36787947|emb|CAE17064.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 189

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 71/191 (37%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS   S A       L A   IA PTE V+GL  D  +  A+  L  +KKRP    LI  
Sbjct: 1   MSNEASPAFESVLTALKAEKVIAYPTEAVFGLGCDPDSEKAVNELLILKKRPWQKGLILI 60

Query: 64  VSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +   ++ +                 WPGP+T V+   +        T    T   RV 
Sbjct: 61  ADNYEQLQPYLDDKLLTEEQKKAMFACWPGPVTWVIP--AKFSAPKWLTGQFATLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K+L   YG PL   SAN +G       + +       ++P I++G +      S 
Sbjct: 119 DHPLVKQLCTFYGKPLVSTSANLNGLEPCRTAEEV-RQQFGDKLP-ILNGDVGGRKNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    +  R
Sbjct: 177 IRDALTGELYR 187


>gi|241557718|ref|XP_002400036.1| YrdC domain-containing protein [Ixodes scapularis]
 gi|215499737|gb|EEC09231.1| YrdC domain-containing protein [Ixodes scapularis]
          Length = 208

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L  G  +A+PT+T+YG+A  ++N  ++ +LY +K+R A  P+   V +   + +
Sbjct: 1   QAAADILRNGGIVALPTDTIYGVAALAQNSESVEKLYRLKRRDAGKPIAICVHNADEISR 60

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETY 131
            A V  +   L    +PG +T V     T +++P           RVP   F +++    
Sbjct: 61  WAQVS-IPEKLLHHLFPGAVTAVFQR--TRELNPKLNPLTPLVGVRVPNSDFIRQVTRCC 117

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG----LESTIVNVQCEK 187
           G PLA+ SAN S ++S  +++     ++   +  + DGG           ST++N     
Sbjct: 118 GEPLALTSANVSSEMSTLSIQE--FQALWPHLDAVFDGGNLGYNGLNREGSTVINFSIPG 175

Query: 188 KVRILRPGGL 197
              I+R G  
Sbjct: 176 HFEIIRKGWW 185


>gi|298480264|ref|ZP_06998462.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22]
 gi|298273545|gb|EFI15108.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. D22]
          Length = 187

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++ P   A   +   RV    F+++L
Sbjct: 63  VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEDFSRRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I+      +     S+I+ ++ 
Sbjct: 120 CQQFRKAIVSTSANVSGQSGAANFSE-ISDEIKSAVDYIVGFRQDDMNKPKPSSIIKLEK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|332701317|ref|ZP_08421405.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551466|gb|EGJ48510.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 206

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 4/198 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            +   A E +  G  +  PTET+YGL   +  P A  R+  +K RP   PL   V     
Sbjct: 2   TSFHAAIEAIKRGGVVIYPTETLYGLGGSAFLPEAAARVCRLKGRPEGKPLPLVVGSREQ 61

Query: 70  VKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
           V     ++      LA LFWPGPL++++   +  D+ P           R         L
Sbjct: 62  VGLVTELEDSDFARLADLFWPGPLSIIVP--ARRDLAPQVKDAEGLTSLRWTAHATAAAL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
               G PL   SAN SG+ +    + +  + + +    +++      G  ST+V +    
Sbjct: 120 CLESGAPLIATSANLSGRPAAARPEDLDPALLAEVDAAVLEHPWPSGGAASTVVRLLGCC 179

Query: 188 KVRILRPGGLEIETLKRA 205
           ++ +LR G +    L++A
Sbjct: 180 RLEVLRIGAVPARVLEQA 197


>gi|290580479|ref|YP_003484871.1| hypothetical protein SmuNN2025_0953 [Streptococcus mutans NN2025]
 gi|254997378|dbj|BAH87979.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 196

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 94/198 (47%), Gaps = 8/198 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L  G  + +PTETVYGL   + +  A+  +Y +KKRP    +  +V+ +  + 
Sbjct: 1   MDKIEEALREGQAVVLPTETVYGLFAQALSKRAVDNVYALKKRPREKAMNLNVASLEDIL 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
             +   P  L  L K F PGPLT+VL   +   +       L T  FRVP    T   I+
Sbjct: 61  AFSKEAPAYLAELYKAFLPGPLTIVL--KANEKVPAWINGGLSTVGFRVPAHPQTLAYIK 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    +  +  +    +  I D   +  G +STI+++    + 
Sbjct: 119 QTG-PLIGPSANLSGQASGLVYRE-IQEAFANRLLGIQDD-KAIKGRDSTILDISSS-RA 174

Query: 190 RILRPGGLEIETLKRAIS 207
           +ILR G L  + ++  + 
Sbjct: 175 KILRQGALTQDAIQAHVK 192


>gi|291515798|emb|CBK65008.1| translation factor SUA5 [Alistipes shahii WAL 8301]
          Length = 200

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++  + L+    I  PT++VY      R+P AI RL  I+ +           +I+
Sbjct: 12  EKELQRVVDALERDEIIIYPTDSVYAFGCSLRSPKAIERLRRIRGKSEEK-FTVVFENIA 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            V ++  VD     + K   PGP T VL   ++  I   +    +T   R+P     + +
Sbjct: 71  QVAEYCRVDNAVFRILKRNLPGPFTFVL--AASARIPDKALERRRTIGVRIPASPVARAV 128

Query: 128 IETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +   G P+   S     Q +  T    ++     +E+ L+IDGGI    + +T+V++  +
Sbjct: 129 VGALGCPMITTSVKDDDQVVEYTTDPELIHERYGREVALVIDGGIGD-NVPTTVVDLTGD 187

Query: 187 KKVRILRPGGLEIE 200
               ILR G  E++
Sbjct: 188 GP-EILREGKGELQ 200


>gi|149023911|gb|EDL80408.1| ischemia/reperfusion inducible protein [Rattus norvegicus]
          Length = 263

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +  +PGP+TLV++   + +++            R+P   F   L
Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMLDL 167

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +G PLA+ SAN S Q S  +V+      +   + L+IDGG        +  L ST+V
Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSESPECRLGSTVV 225

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+R G 
Sbjct: 226 DLSVPGKFGIIRSGC 240


>gi|147903663|ref|NP_001082498.1| yrdC domain containing [Xenopus laevis]
 gi|49118602|gb|AAH73618.1| LOC398509 protein [Xenopus laevis]
          Length = 236

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 12/186 (6%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  I +PT+T+YG+A  ++N  +I  +Y +K R    PL   V ++  + ++  V+
Sbjct: 37  ILQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN 96

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
            +   L +   PGP+TLV++   +  ++            R+P   F ++L E    PLA
Sbjct: 97  -VPDQLLRDLLPGPVTLVMER--SDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLA 153

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVR 190
           + SAN S Q S   V+      +  ++ L++DGG        +  L ST+V++    K  
Sbjct: 154 LTSANISSQESTLTVEE--FRDLWPKLSLVVDGGPIGEHSSPECRLGSTVVDLSVPGKFT 211

Query: 191 ILRPGG 196
           ++R G 
Sbjct: 212 VIRDGC 217


>gi|317494303|ref|ZP_07952717.1| yrdC domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917553|gb|EFV38898.1| yrdC domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 189

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 71/191 (37%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M     ++L      L     +A PTE V+GL  D  +  A+  L ++K+R     LI  
Sbjct: 1   MKKEQESSLANVLNALKNEKVVAYPTEAVFGLGCDPDSELAVHALLDLKQRQWEKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            ++   ++ +     LS    +    +WPGP+T V+    TT           T   RV 
Sbjct: 61  AANYEQLQPYVDDAKLSGERREEVFSYWPGPVTWVMPAKPTTPQ--WLRGRFSTIAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L   +G PL   SAN SG       + +         P ++D  +      S 
Sbjct: 119 DHPLVQTLCLQFGKPLVSTSANLSGLEPCRTAQEV-RLQFGNAFP-VVDAEVGGRLNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    +  R
Sbjct: 177 IRDALTGELFR 187


>gi|22537233|ref|NP_688084.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           2603V/R]
 gi|22534100|gb|AAM99956.1|AE014241_7 Sua5/YciO/YrdC/YwlC family protein [Streptococcus agalactiae
           2603V/R]
          Length = 183

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 6/181 (3%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HLAK 85
           +PTETVYG+   + +  A+  +YE+KKRP    +  ++ D   + K++   P  L  L  
Sbjct: 1   MPTETVYGIFAKALSEEAVNHVYELKKRPRDKAMNLNICDFETILKYSKNQPTYLKQLYD 60

Query: 86  LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQ 145
            F PGPLT++L+  ++ ++     + L +  FR+P       +     PL  PSAN SG 
Sbjct: 61  AFLPGPLTIILE--ASQEVPHWINSGLLSVGFRMPKHPVTLDMIANHGPLIGPSANISGC 118

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRA 205
            S       +      ++  I D   +  G++STI+++  + +V+ILR G +  E L   
Sbjct: 119 DSGRVFSE-IQKQFNHQVLGIEDD-KALTGVDSTIIDLSGD-RVKILRQGAITQEVLTAT 175

Query: 206 I 206
           I
Sbjct: 176 I 176


>gi|82778580|ref|YP_404929.1| putative ribosome maturation factor [Shigella dysenteriae Sd197]
 gi|123561454|sp|Q32B67|RIMN_SHIDS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|81242728|gb|ABB63438.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 190

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKLRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|24379520|ref|NP_721475.1| hypothetical protein SMU.1083c [Streptococcus mutans UA159]
 gi|24377461|gb|AAN58781.1|AE014946_6 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 196

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 8/198 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E L  G  + +PTETVYGL   + +  A+  +Y++KKRP    +  +V+ +  + 
Sbjct: 1   MDKIEEALREGQAVVLPTETVYGLFAQALSKRAVDNVYDLKKRPREKAMNLNVASLEDIL 60

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
             +   P  L  L K F PGPLT+VL   +   +       L T  FRVP    T   I+
Sbjct: 61  AFSKEAPAYLAELYKAFLPGPLTIVL--KANEKVPAWINGGLSTVGFRVPAHPQTLAYIK 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL  PSAN SGQ S    +  +  +    +  I D   +  G +STI+++    + 
Sbjct: 119 QTG-PLIGPSANLSGQASGLVYRE-IQEAFANRLLGIQDD-KAIKGRDSTILDISSS-RA 174

Query: 190 RILRPGGLEIETLKRAIS 207
           +ILR G L  + ++  + 
Sbjct: 175 KILRQGALTQDAIQAHVK 192


>gi|119509689|ref|ZP_01628835.1| hypothetical protein N9414_21841 [Nodularia spumigena CCY9414]
 gi|119465708|gb|EAW46599.1| hypothetical protein N9414_21841 [Nodularia spumigena CCY9414]
          Length = 216

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 11/199 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L +G  +  PT+TVY +  D    +A+ R+ +IK+     PL      +S V 
Sbjct: 17  IEEIKSALSSGAVMLYPTDTVYAIGCDLNAKSAVERVRQIKQLANDKPLTFLCPSLSNVA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
            +A V   +  + K   PG  T +L   +T  +  L  +   KT   RVP       L+ 
Sbjct: 77  TYAFVSDTAYRIMKRLIPGSYTFLLP--ATKLVPRLVQSPKRKTTGIRVPDHPVCLALLA 134

Query: 130 TYGHPLAIPSANRSGQI-------SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              +P+   SA+                 +  L   +   + +IID G       STI++
Sbjct: 135 ALENPIISTSAHLPPDDEPVELDLEPRLSRVELFDRLDNLVDVIIDTGEETTYEVSTILD 194

Query: 183 VQCEKKVRILRPGGLEIET 201
           +  ++ +   R  G E   
Sbjct: 195 LTGDEPMITRRGLGWEAAA 213


>gi|120602852|ref|YP_967252.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris DP4]
 gi|120563081|gb|ABM28825.1| translation factor SUA5 [Desulfovibrio vulgaris DP4]
          Length = 223

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 4/193 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L  G  +  PTET +G+  D R+  A+  ++  K+R +   L   + D S + 
Sbjct: 22  IADAVRLLAGGGVLVYPTETFFGIGCDVRDARAVDAVFRAKRRQSGMALPVILGDASQLG 81

Query: 72  KHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIE 129
                   +   LA+ FWPGPL+++   L   ++    T        RV P      L  
Sbjct: 82  MVTRGHGAVEAALARDFWPGPLSILCPALP--ELPDTLTGGTGRVAVRVSPHPAAMALAL 139

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA  SAN SG+ ++  V  +    +     +         GL ST+V+V  +  +
Sbjct: 140 GLGAPLAASSANVSGRAAVVRVADLDRELLSGVDGVYDAPPQPAGGLPSTLVDVLTDGTL 199

Query: 190 RILRPGGLEIETL 202
           RILR G +    L
Sbjct: 200 RILREGAVPRAAL 212


>gi|92114981|ref|YP_574909.1| SUA5/yciO/yrdC-like protein [Chromohalobacter salexigens DSM 3043]
 gi|122419275|sp|Q1QTJ8|RIMN_CHRSD RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|91798071|gb|ABE60210.1| translation factor SUA5 [Chromohalobacter salexigens DSM 3043]
          Length = 185

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 6/184 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ +  A   L  G  +A PTE V+GL  D  +  A+ RL  +K+R     LI    D+ 
Sbjct: 5   ADRIADAVAALRRGALLAYPTEAVWGLGCDPDDDAALARLIALKQRDPAKGLILIAGDMD 64

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            ++   A +D L        WPGP T ++         PL      +   RV      ++
Sbjct: 65  QLEPWLAGLDALQRARLAESWPGPNTWLVP--DNGRARPLLRGEHTSLAVRVSDHPLVRQ 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +G PL   SANR+G+    +   + ++    E   ++DG +      STI ++Q  
Sbjct: 123 LCAAFGGPLVSSSANRAGEPPAMSAADVRAAF--GEAVTLLDGALGGYARPSTIRDLQSG 180

Query: 187 KKVR 190
           + +R
Sbjct: 181 ETLR 184


>gi|156399845|ref|XP_001638711.1| predicted protein [Nematostella vectensis]
 gi|156225834|gb|EDO46648.1| predicted protein [Nematostella vectensis]
          Length = 224

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +         +  A   L  G  IA+PT+T+YG+A  +++  A+++LYEIK R    P+ 
Sbjct: 10  EFADTQQEELIHAAVASLKLGHVIALPTDTIYGIAALTQSCNAVQKLYEIKGRHQEKPVA 69

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             V +I  VK+   V  +S  +     PGP+TLV +   T +++P           R+P 
Sbjct: 70  IAVGNIEDVKRWGKVT-VSDDILTDLLPGPVTLVFER--TPELNPSLNPGTTLIGIRIPN 126

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGL 176
             F +KL +    P+A+ SAN+S  +S   V+     S+   + L++DGG      +   
Sbjct: 127 HHFVRKLAKACAEPIALTSANQSSAMSSLKVEE--FKSLWPHLDLVVDGGPVGDSPECRQ 184

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            ST++N+    +  I+R G    +TL
Sbjct: 185 GSTVINLSVPGQFSIIREGSAYQQTL 210


>gi|284923289|emb|CBG36383.1| conserved hypothetical protein [Escherichia coli 042]
          Length = 190

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+  L E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMLLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           ++ +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LRPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L + YG PL   SAN SG      V  +  +      P ++ G        S I +   
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALT 183

Query: 186 EKKVR 190
            +  R
Sbjct: 184 GELFR 188


>gi|325280221|ref|YP_004252763.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
           20712]
 gi|324312030|gb|ADY32583.1| Sua5/YciO/YrdC/YwlC family protein [Odoribacter splanchnicus DSM
           20712]
          Length = 190

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 7/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +RK    L  G  I  PT+T++GL  D+ NP A++R+Y+IKKR     ++  + D  
Sbjct: 6   KEEIRKTLGILKNGGVILYPTDTIWGLGCDATNPEAVKRIYDIKKRADNKSMLVLLDDAG 65

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A V  ++L L ++    P T++        + P   A   T   R+    FT+ L
Sbjct: 66  KIASYADVPDIALDLIEVA-DKPTTIIYPGAK--RLAPNLIAEDGTIGIRITREEFTRSL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQC 185
           I  Y  P+   SAN SG+ S       +S  I   +  I+D   +       S+I+ +  
Sbjct: 123 IFRYNKPIVSTSANISGEPSPHFFGE-ISEEIKNAVDYIVDYRRNDHKPAAPSSIIKLGM 181

Query: 186 EKKVRILR 193
             +++I+R
Sbjct: 182 GGEIQIIR 189


>gi|304415190|ref|ZP_07395904.1| putative ribosome maturation factor [Candidatus Regiella
           insecticola LSR1]
 gi|304282960|gb|EFL91409.1| putative ribosome maturation factor [Candidatus Regiella
           insecticola LSR1]
          Length = 189

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS  +   L K    L     IA PTE+V+GL  D  +  A+  L  +K+R     LI  
Sbjct: 1   MSQNEPAQLEKVLLALQHEEVIAYPTESVFGLGCDPNSEKAVNALLTLKQRSRQKGLILV 60

Query: 64  VSDISMVKKHASVDPLS-LHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            ++   ++ +     LS    A +F  WPG +T V+   +  D     T    +   RV 
Sbjct: 61  AANYDQLQPYLDDSQLSMAQRASVFSSWPGAITWVIP--AKRDTPDWLTGRFNSLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++L   YG PL   SAN SG         +        +  ++ G +      S 
Sbjct: 119 AHPLVRQLCTCYGKPLVSTSANLSGHPPCRTEADVKMQF--GILLPVLTGQVGGCKNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    K++R
Sbjct: 177 IRDALTGKQLR 187


>gi|255021578|ref|ZP_05293621.1| hypothetical protein ACA_2491 [Acidithiobacillus caldus ATCC 51756]
 gi|254968966|gb|EET26485.1| hypothetical protein ACA_2491 [Acidithiobacillus caldus ATCC 51756]
          Length = 211

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 4/201 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A + L  G  +  PT++ Y L        A  RL  I++    + L    +D+S
Sbjct: 14  SRLIAQAGDALRRGALLIYPTDSCYALGCCLWAKDAQDRLRHIRQLDIQHDLSLLFADLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            + ++  +D     L +   PGP T++L          L+    ++   R+P     + L
Sbjct: 74  QLSEYLKLDDRVYRLLRGLLPGPYTVILPATHDVP-RRLADGKRRSIGARIPDSAICRAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   + +  G     +   ++ + + K +  I+ GG     + ST+V+     
Sbjct: 133 LTELGEPLMSSTLHLPGDDLPLHDPEVICARMEKRVDGILLGGEGST-VCSTVVDCTVW- 190

Query: 188 KVRILRPGGLEIETLKRAISV 208
             ++LR G  +   L+ A+ +
Sbjct: 191 PPQVLREGLGDGGALRAALGL 211


>gi|162447073|ref|YP_001620205.1| dsRNA binding, YrdC domain-containing protein [Acholeplasma
           laidlawii PG-8A]
 gi|161985180|gb|ABX80829.1| dsRNA binding, YrdC domain protein [Acholeplasma laidlawii PG-8A]
          Length = 182

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 8/185 (4%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82
             +  PT+TVYGL     +   ++++YEIK R    P+   +S++  VK+ A     +L 
Sbjct: 3   KLLIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNALK 62

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
           +A  FWPG LTL+ +            +  KT   R+P      KLI+  G PL   S N
Sbjct: 63  VASKFWPGGLTLIFESSD----AYYQQSGEKTIGLRMPNHKLALKLIDELG-PLKTTSVN 117

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            S Q    N    +      ++  +     S   + ST+++   +    ++R G + ++ 
Sbjct: 118 YSNQP-PLNDYDAIMKVFGDKVDKVYPNEESLSEVSSTVIDFTHDLP-SLIRQGDITLDE 175

Query: 202 LKRAI 206
           + + +
Sbjct: 176 IMKVL 180


>gi|72163602|ref|XP_793502.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115954038|ref|XP_001190640.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 222

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 103/198 (52%), Gaps = 10/198 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +  A   L +G  I++PT+T+YGLA  +++  A+ +LYE+K R    P+   ++ I  +
Sbjct: 17  VVALAANSLMSGNVISVPTDTIYGLAALAQSAEAVEKLYEVKGRNGNKPIAICINCIEDI 76

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
            +   V  +S  + +   PGP+T++    S  +++P    + +    R+P   F ++L  
Sbjct: 77  HRWGYVT-VSDDILRDLLPGPVTVLFRRRS--ELNPEFNPSSELIGLRIPEYPFIQQLAA 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQC 185
             G P+A+ SAN S Q S  +VK      +  +I L+ DGG+     +    ST+V++  
Sbjct: 134 AVGEPIALTSANPSAQRSTLSVKE--FEDLWSKIDLVFDGGVLSDSEESRQGSTVVDLSV 191

Query: 186 EKKVRILRPGGLEIETLK 203
             +  I+RPG  + +T+K
Sbjct: 192 MGRFSIIRPGSAQEKTVK 209


>gi|317049802|ref|YP_004117450.1| SUA5/yciO/yrdC domain-containing protein [Pantoea sp. At-9b]
 gi|316951419|gb|ADU70894.1| SUA5/yciO/yrdC domain protein [Pantoea sp. At-9b]
          Length = 191

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L    E L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   +D +
Sbjct: 8   PGSLDFCIEQLQQQAVIAYPTEAVFGLGCDPDSEHAVMSLLALKQRPVEKGLILIAADYA 67

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            ++ + +   LS          WPGP+T V+     T      T    +   RV      
Sbjct: 68  QLEPYVADQELSVVQRERMFASWPGPVTYVVPASPHT--PRWLTGRFDSLAIRVSDHPDV 125

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +G PL   SAN SG+        + +       P ++ G        S I +V 
Sbjct: 126 QALCRRFGKPLVSTSANLSGEPPCRTAAEV-AQQFGVAFP-VLVGATGGRLNPSEIRDVI 183

Query: 185 CEKKVR 190
             + +R
Sbjct: 184 SGELIR 189


>gi|281424255|ref|ZP_06255168.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris F0302]
 gi|281401524|gb|EFB32355.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris F0302]
          Length = 189

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    +R A E +  G  I  PT+TV+G+  D+ N  A+ ++Y IKKR     LIC V 
Sbjct: 1   MTREEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60

Query: 66  DISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + +++   +V  ++  L       P T++LD     ++     A   +   R+    F
Sbjct: 61  SDARLQRCFRNVPNVAWELLDAAI-KPTTVILD--DAVNVAENLVAEDGSLAMRITSEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           +K+L   +  P+   SAN SG+ +  N +  +S  I   +  +      +      S+I+
Sbjct: 118 SKELCYRFQKPVVSTSANVSGEPAAANYED-ISEEILNAVDYVCWSRRQEHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +    +V ++R
Sbjct: 177 KLGRNGEVTVIR 188


>gi|317503445|ref|ZP_07961483.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella salivae DSM 15606]
 gi|315665433|gb|EFV05062.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella salivae DSM 15606]
          Length = 189

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 6/191 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    +R A E +  G  I  PT+TV+G+  D+ N  A+ ++Y IKKR     LIC V 
Sbjct: 1   MTKEEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60

Query: 66  DISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + +++   +V  ++  L       P T++LD     ++     A   +   R+    F
Sbjct: 61  SDARLQRCFRNVPAVAWELLDAA-VKPTTVILD--DAVNVAENLVAEDGSLAVRITNEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVN 182
           +K+L   +  P+   SAN SG+ +  N   I    +     +        K  + S+I+ 
Sbjct: 118 SKELCFRFQKPIVSTSANVSGEPAAANYGDISEEILNAVNYVCWSRRQEHKPHVPSSIIK 177

Query: 183 VQCEKKVRILR 193
           +  + +V ++R
Sbjct: 178 LGRDGEVTVIR 188


>gi|300728246|ref|ZP_07061614.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bryantii B14]
 gi|299774481|gb|EFI71105.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella bryantii B14]
          Length = 192

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 9/194 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++ A   +  G  I  PT+TV+G+  D+ N  A+ ++Y+IKKR     LIC V 
Sbjct: 1   MTQEEDIKNAVAVMRKGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFW--PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
             + ++++   +  ++  L +       P T++LD      +     A   +   R+   
Sbjct: 61  SDNRLQRYFRDIPNVAWDLFESISENTKPTTVILDN--ANGVASNLVAEDGSLAVRITKE 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLEST 179
            F+ +L   +  P+   SAN SGQ + +N +  +   + + +  +     ++      S+
Sbjct: 119 KFSHELCYRFQKPIVSTSANISGQPAASNYRD-IDPVLLEAVDYVCASRRNEHKPHTPSS 177

Query: 180 IVNVQCEKKVRILR 193
           IV +    +++I+R
Sbjct: 178 IVKLSQNGEIQIIR 191


>gi|260906198|ref|ZP_05914520.1| hypothetical protein BlinB_12795 [Brevibacterium linens BL2]
          Length = 216

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 5/197 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L +     + G  + IPT+TVYG+A D+ + +A+  L   K R    P    V     V
Sbjct: 16  VLDECARVSETGNLLVIPTDTVYGIAADAFSASAVSALLAAKGRGRDMPPPVLVPRAETV 75

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
                 VD   L L   FWPGPLT++ +   + D     T    T   R+P       + 
Sbjct: 76  FGLVDGVDEKLLALTARFWPGPLTIIANAQPSLDWDLGDT--HGTVAVRMPDDEYALALL 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               PLA+ SAN SG  + T+    +   +  ++ + +DGG+ + G+ STIV++  +   
Sbjct: 134 GRTGPLAVSSANVSGSPAATSADEAM-EMLGDDVDIYVDGGVRESGISSTIVDLTGDVP- 191

Query: 190 RILRPGGLEIETLKRAI 206
           +I+R G +  + L+  +
Sbjct: 192 KIVREGPVTSDELREIV 208


>gi|293393274|ref|ZP_06637588.1| ribosome maturation factor RimN [Serratia odorifera DSM 4582]
 gi|291424184|gb|EFE97399.1| ribosome maturation factor RimN [Serratia odorifera DSM 4582]
          Length = 185

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L+    IA PTE V+GL  D  +  A+R L  +K+RP    LI   ++   +  + +  
Sbjct: 11  ALNNQQVIAYPTEAVFGLGCDPDSEQALRELLALKQRPWEKGLILIAAEYDQLLPYIADS 70

Query: 78  PLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            LS    A +F  WPGP+T V+    TT    L T +  +   RV      ++L   +G 
Sbjct: 71  QLSESQRAAIFASWPGPVTWVIPAKPTT--STLLTGHFNSLAVRVSDHPLVQQLCREFGK 128

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           PL   SAN SGQ    +   +L        P ++ G +      S I +    +++R
Sbjct: 129 PLVSTSANLSGQEPCRSANEVL-QQFGAAFP-VLAGNVGGRLNPSEIRDALTGEQIR 183


>gi|218261693|ref|ZP_03476428.1| hypothetical protein PRABACTJOHN_02096 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223857|gb|EEC96507.1| hypothetical protein PRABACTJOHN_02096 [Parabacteroides johnsonii
           DSM 18315]
          Length = 186

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 10/190 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++KACE + AG  I  PT+T++G+  D+ N  A++++YE+KKR     ++      +
Sbjct: 2   TEDIQKACEIMQAGGIILYPTDTIWGIGCDATNEKAVQKVYELKKRMDNKAMLVLTDSSA 61

Query: 69  MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            +  + S    ++  L ++    PLT++       ++         +   RV    F++K
Sbjct: 62  KLSMYVSDMPDIAWDLIEVA-DKPLTIIYPHAK--NLANNLLGEDGSVGIRVTNEEFSRK 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIGLESTIVNV 183
           L E +  PL   SAN SG+ S  N   + S SI   +  I+      +SK G  S I+ +
Sbjct: 119 LCERFRRPLVSTSANVSGEPSPGNFSEV-SDSIKNGVDYIVKYRQDDMSKAG-PSNIIKL 176

Query: 184 QCEKKVRILR 193
                V+++R
Sbjct: 177 GDGGVVQVIR 186


>gi|305664811|ref|YP_003861098.1| hypothetical protein FB2170_00860 [Maribacter sp. HTCC2170]
 gi|88707933|gb|EAR00172.1| hypothetical protein FB2170_00860 [Maribacter sp. HTCC2170]
          Length = 189

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 5/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +    + L  G  I  PT+TV+G+  D+    A++++Y +K+R     LI  V++ +
Sbjct: 5   TAEINSCIKVLSEGGLILYPTDTVWGIGCDATKEEAVQKVYALKQREDSKALISLVANDA 64

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKL 127
           M+++H    P   +        P T++ D      + P   A   T   RV    F + L
Sbjct: 65  MLERHVEQVPEVAYEILDLATKPTTIIYDNPKG--LAPNVIAQDNTMAIRVASDKFCQYL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCE 186
           I  +  P+   SAN +GQ +  +    +S  I K +  I++    K     S+I+ +  +
Sbjct: 123 INKFRKPIISTSANVTGQSTPKSFSE-ISEPILKGVDYIVNLEHDKKNESASSIIKLSND 181

Query: 187 KKVRILRP 194
             V+++R 
Sbjct: 182 GTVKVIRQ 189


>gi|332531465|ref|ZP_08407369.1| sua5/ycio/yrdc/ywlc family protein [Hylemonella gracilis ATCC
           19624]
 gi|332039134|gb|EGI75556.1| sua5/ycio/yrdc/ywlc family protein [Hylemonella gracilis ATCC
           19624]
          Length = 207

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L +G  +A+PT++ Y L     +  A  RL  I++    + L     D+S
Sbjct: 14  QRLLKQAVALLASGQVLAVPTDSCYALVCHLDDKAAAERLRAIRRIDDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PGP   +L+         LS    KT   RVP     ++L
Sbjct: 74  ELANYARVDNRQYRLLKAATPGPWAFILEASKEVP-RRLSHPARKTIGLRVPDHKVLQEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G PL   +   +G+    N    + S    ++  +ID G   +   +T++++  ++
Sbjct: 133 LALHGAPLLATTLIPAGETEPLNDAEEIRSRYQHDLAAVIDAGACPL-EPTTVIDLTGDE 191

Query: 188 KVRILRPGG 196
              I R  G
Sbjct: 192 PEIIRRGRG 200


>gi|299141002|ref|ZP_07034140.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris C735]
 gi|298577968|gb|EFI49836.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella oris C735]
          Length = 189

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    +R A E +  G  I  PT+TV+G+  D+ N  A+ ++Y IKKR     LIC V 
Sbjct: 1   MTREEDIRNAVECMRKGGVILYPTDTVWGIGCDATNKEAVAKVYAIKKRDDSKALICLVD 60

Query: 66  DISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + +++   +V  ++  L       P T++LD     ++     A   +   R+    F
Sbjct: 61  SDARLQRCFRNVPNVAWELLDAAI-KPTTVILD--DAVNVAENLVAEDGSLAMRITSEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           +K+L   +  P+   SAN SG+ +  N K  +S  I   +  +      +      S+I+
Sbjct: 118 SKELCYRFQKPVVSTSANVSGEPAAANYKD-ISEEILNAVDYVCWSRRQEHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +    +V ++R
Sbjct: 177 KLGRNGEVTVIR 188


>gi|310765560|gb|ADP10510.1| Putative DNA topoisomerase [Erwinia sp. Ejp617]
          Length = 181

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L     IA PTE V+GL  D  +  A+ RL  +K+RP    LI   +D   + 
Sbjct: 1   MAQCVQQLAQSHVIAYPTEAVFGLGCDPDSEEAVMRLLVLKQRPVKKGLILIAADYQQLI 60

Query: 72  KHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
              + + L +   A++F  WPGP+T VL   STT      T    T   RV        L
Sbjct: 61  PWIADEQLSAEQKARMFSRWPGPVTWVLPARSTT--PGWLTGQFTTLAVRVSDHPDVIAL 118

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G     +V  +L +    + P ++ G        S I +V   +
Sbjct: 119 CHAFGKPLVSTSANLTGLPPCRHVAEVL-AQFGPDFP-VLKGETGGRLNPSEIRDVLTGE 176

Query: 188 KVR 190
            +R
Sbjct: 177 LIR 179


>gi|212550954|ref|YP_002309271.1| SUA5 family translation factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549192|dbj|BAG83860.1| putative SUA5 family translation factor [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 189

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 7/189 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K CE L  G  +  PT+T++GL  D+ N  A+ R++ IKKRP    ++  +    
Sbjct: 3   QKEIAKTCEILRNGGIVLYPTDTIWGLGCDASNEEAVERIFFIKKRPNTRTMLILLDSFD 62

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +  +   +  ++  L  +F   PLT++       ++ P   A+  T   R+    F+K+
Sbjct: 63  ELHNYVENLPEITPDLIDIFHKKPLTIIYSGAK--NVAPNLIASDGTLGIRITKDFFSKQ 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNVQ 184
           L     +PL   SAN SGQ + T     +S+ I + +  +++    I +    S+I+ ++
Sbjct: 121 LCFQLKNPLVSTSANISGQATPTTFSE-ISNEIIESVDYVVNYKRNIIQSAKPSSIIQIE 179

Query: 185 CEKKVRILR 193
               ++++R
Sbjct: 180 NGNSIKVIR 188


>gi|149278884|ref|ZP_01885019.1| hypothetical protein PBAL39_06896 [Pedobacter sp. BAL39]
 gi|149230503|gb|EDM35887.1| hypothetical protein PBAL39_06896 [Pedobacter sp. BAL39]
          Length = 188

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 8/189 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  + L  G  I  PT+TV+GL  D+ N  A+ R+ +IK R +    I  +   +
Sbjct: 3   KTEIDKTLQILKDGGVILYPTDTVWGLGCDATNEQAVERINDIKARSSDKSFIVLLDTDA 62

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
            ++ + A V  ++  L + +   PLTLV       ++         +   R V  GF ++
Sbjct: 63  KLQSYIAEVPDVAYDLIE-YAENPLTLVFPGAK--NLAKNVINADGSVGIRIVKHGFCQQ 119

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQ 184
           L++ +  P+   SAN+SG  +       +S  I + +  ++D           STI+ + 
Sbjct: 120 LLQRFRKPITSTSANKSGLPAPAYFDE-ISEEIKQAVDYVVDWEQELRINKKPSTIMKLA 178

Query: 185 CEKKVRILR 193
              +   +R
Sbjct: 179 PGGQFSFIR 187


>gi|311696638|gb|ADP99511.1| Sua5/YciO/YrdC/YwlC family protein [marine bacterium HP15]
          Length = 190

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 4/182 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   +  G  IA PTE V+GL  D  +  A+ ++ E+K+RP    +I   S +  V
Sbjct: 11  QLHCARRTVLGGGVIAYPTEAVWGLGCDPWDQEAVEKVLELKQRPVEKGVILVASSLDQV 70

Query: 71  KKHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           +      P  L   A+  WPGP+T +L       +         +   RV      + L 
Sbjct: 71  RFLLDPLPPLLRAEAERHWPGPVTCLLPD-PERQVPEWVRGKHSSIAVRVSEHPVVRALC 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G PL   S N +G+    ++  +       ++  I+ G +      S I+++   ++
Sbjct: 130 EATGMPLVSTSCNPAGRQPARHIWQV-RGYFGDQLDWIVPGALGGNRKPSRIIDIVSGQQ 188

Query: 189 VR 190
           +R
Sbjct: 189 LR 190


>gi|26986815|ref|NP_742240.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
 gi|81442499|sp|Q88RQ9|RIMN_PSEPK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|24981412|gb|AAN65704.1|AE016197_2 Sua5/YciO/YrdC/YwlC family protein [Pseudomonas putida KT2440]
          Length = 185

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    +I    
Sbjct: 7   VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIADNIRQFD 66

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 P          WPGP T ++       +    T    T   RV      + +  
Sbjct: 67  FLFEDFPEDWIDRMSSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPVVRELCA 124

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   S N  G+ +      +       ++ L++ G +      S I ++   + VR
Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFHGQLDLVLGGALGGRKNPSVIRDLATGEVVR 183

Query: 191 I 191
            
Sbjct: 184 P 184


>gi|218281197|ref|ZP_03487721.1| hypothetical protein EUBIFOR_00284 [Eubacterium biforme DSM 3989]
 gi|218217585|gb|EEC91123.1| hypothetical protein EUBIFOR_00284 [Eubacterium biforme DSM 3989]
          Length = 208

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 7/199 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N + +     +    IA+PT+TVYG+ V   N   + RL   K RP   P+   VS++ 
Sbjct: 16  KNQVHEVVCAFNEHKIIALPTDTVYGVGVKYGNLDDLERLKRAKHRPETKPIPMMVSNVE 75

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +K+ A VD     +A  F PG LTLV+++  + D  P  T  L T   R+P   F   +
Sbjct: 76  QMKQVALVDERIEKIAAKFLPGALTLVVNVKESVD--PAYTNGLSTIAIRIPDEKFILDV 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I+    P+ + SAN+SG+ +      +       +I  I+ G   K    STIV+   +K
Sbjct: 134 IDELNCPILVTSANQSGEKTALTSDDVYEQL--PKIDGIVLG-TCKALQASTIVDCTKDK 190

Query: 188 KVRILRPGGLEIETLKRAI 206
            + ILRPG + +E L   +
Sbjct: 191 -LVILRPGPISLEELNSVL 208


>gi|120552989|ref|YP_957340.1| SUA5/yciO/yrdC domain-containing protein [Marinobacter aquaeolei
           VT8]
 gi|212288209|sp|A1TWN4|RIMN_MARAV RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|120322838|gb|ABM17153.1| translation factor SUA5 [Marinobacter aquaeolei VT8]
          Length = 190

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 4/182 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A + + AG  IA PTE V+GL  D  N  A+  + E+K+RP    +I   + +  V
Sbjct: 11  QLALARQTVLAGGVIAYPTEAVWGLGCDPWNREAVEYILELKQRPMEKGVILVAASVEQV 70

Query: 71  KKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +      P ++   A   WPGP+T +L  +    +         +   RV      + L 
Sbjct: 71  RFLLDPLPDAVQSEALRHWPGPVTCLLPDV-NQQVPEWVRGKHSSIAVRVSDHPVVRALC 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G PL   S N +G+     +  +        I  I+ G +      S I+++   ++
Sbjct: 130 EATGMPLVSTSCNPAGRQPARAIWQV-RRYFGDRIDRIVPGALGGNRKPSRIIDIVTGQQ 188

Query: 189 VR 190
            R
Sbjct: 189 FR 190


>gi|113474502|ref|YP_720563.1| translation factor SUA5 [Trichodesmium erythraeum IMS101]
 gi|110165550|gb|ABG50090.1| translation factor SUA5 [Trichodesmium erythraeum IMS101]
          Length = 218

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 12/198 (6%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L  G  +  PT+TVY +  D    +A+ ++ +IK+     PL    S +S + 
Sbjct: 17  VEKIINDLKDGAVMLYPTDTVYAIGCDLYVKSAVEKVRQIKQLSNDKPLTFLCSSLSNIA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIE 129
            +A V+  +  + K   PGP T VL   +T  +  L  +   KT   RVP       L++
Sbjct: 77  NYAVVNDSAYRIIKRLIPGPYTFVLP--ATKLVPRLVMSPKRKTTGIRVPNNQVCLTLLK 134

Query: 130 TYGHPLAIPSANRSGQ--------ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              +P+   SAN +          + +   K  L   +   + +I+D G   I   STI+
Sbjct: 135 ALDNPIISTSANITSDAEGIAPIKVEVVTGKAELFDCLENLVDIIVDDGSDSIYQVSTIL 194

Query: 182 NVQCEKKVRILRPGGLEI 199
           ++   +   I +  G+E 
Sbjct: 195 DLTGHQPNLIRQGLGVEA 212


>gi|255011315|ref|ZP_05283441.1| hypothetical protein Bfra3_19388 [Bacteroides fragilis 3_1_12]
 gi|313149125|ref|ZP_07811318.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137892|gb|EFR55252.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 187

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+TV+G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKQRADSKAMLVLVDSPVK 62

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V+ +    P ++  L ++    PLT++       ++     A   +   RV    F+++L
Sbjct: 63  VEFYVQDVPSIAWDLMEVA-DKPLTIIYS--GARNLASNLLAEDGSVGIRVTNEAFSRRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I++     +     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANISGQPGAANFNE-ISEEIKSSVDYIVNFRQDDMSRPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|119961897|ref|YP_948325.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1]
 gi|119948756|gb|ABM07667.1| putative Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens
           TC1]
          Length = 304

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 9/203 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L+ A   +     I +PT+TVYG+A D+ +P A+  L   K R    P    +  ++
Sbjct: 14  AEGLQHAQRAISEKKCIVLPTDTVYGIAADAFSPLAVTMLLASKGRSRQMPPPVLIPRVN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +   A  V   +  LA+ FWPG LTL+L    + D     T    T   R+P       
Sbjct: 74  ALDGLATDVPADARALAQAFWPGGLTLILHAQPSLDWDLGDTKG--TVALRMPDDQIALE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNV 183
           +     PLA+ SANR+GQ +           + + + + ++GG         L STIV+ 
Sbjct: 132 LLGLTGPLAVSSANRTGQEAAQTASEA-RLQLAESVEVYLEGGFRPIKGTAALPSTIVDA 190

Query: 184 QCEKKVRILRPGGLEIETLKRAI 206
                 R++R G +E+E L+  +
Sbjct: 191 TS-TPFRVVRQGAIELERLREIV 212


>gi|82703432|ref|YP_412998.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196]
 gi|82411497|gb|ABB75606.1| Sua5/YciO/YrdC/YwlC [Nitrosospira multiformis ATCC 25196]
          Length = 210

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 9/201 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q  SI   N     +R+    + AG  I  PT++ Y L     +   + R+  ++     
Sbjct: 3   QFFSIHPDNPQPRLIRQTAAIVRAGGVIVCPTDSCYALGGQLGDKNVMSRIRALRGVDED 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D + + ++A  D     L +   PG  T +           L      T   
Sbjct: 63  HHFTLMCRDFTEISRYAKFDNTEYRLLRACTPGCYTFIFQATREVP-RRLLHPRRNTIGM 121

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P     + L+     PL   +    G+    N    + + +  ++ LI+D G    GL
Sbjct: 122 RIPDQAVVQALLAELNEPLLSSTLILPGEALPLNDPLEIRARLEHQVELILDSGAC--GL 179

Query: 177 E-STIVNVQCEKKVRILRPGG 196
           E ST+V++  +  V + +  G
Sbjct: 180 EMSTVVDLTGDTPVVVRQGKG 200


>gi|46579666|ref|YP_010474.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449081|gb|AAS95733.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233463|gb|ADP86317.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris RCH1]
          Length = 210

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 4/193 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L  G  +  PTET +G+  D R+  A+  ++  K+R +   L   + D S + 
Sbjct: 9   IADAVRLLAGGGVLVYPTETFFGIGCDVRDARAVDAVFRAKRRQSGMALPVILGDASQLG 68

Query: 72  KHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIE 129
                   +   LA+ FWPGPL+++   L   ++    T        RV P      L  
Sbjct: 69  MVTRGHGAVEAALARDFWPGPLSILCPALP--ELPDTLTGGTGRVAVRVSPHPAAMALAL 126

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA  SAN SG+ ++  V  +    +     +         GL ST+V+V  +  +
Sbjct: 127 GLGAPLAASSANVSGRAAVVRVADLDRELLSGVDGVYDAPPQPAGGLPSTLVDVLTDGTL 186

Query: 190 RILRPGGLEIETL 202
           RILR G +    L
Sbjct: 187 RILREGAVPRAAL 199


>gi|313204812|ref|YP_004043469.1| translation factor sua5 [Paludibacter propionicigenes WB4]
 gi|312444128|gb|ADQ80484.1| translation factor SUA5 [Paludibacter propionicigenes WB4]
          Length = 187

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 91/188 (48%), Gaps = 8/188 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + K  E L +G  I  PT+TV+GL  D+ N TA++R+++IKKR     ++  + +   
Sbjct: 3   EEIIKTLEVLRSGGVILYPTDTVWGLGCDATNETAVKRIFDIKKRADAKAMLVLIDNPGK 62

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           ++ +   V  ++  L ++    PLT++       ++ P   A  K+   RV    F+KKL
Sbjct: 63  LQSYVDEVPDIAWDLIEMS-EKPLTIIYPQ--ARNLAPNLVAEDKSIGIRVTNEEFSKKL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQC 185
              +  P+   SAN SG+ +  N    ++  I   +  +++    ++ L   S+I+ +  
Sbjct: 120 CAQFRKPIVSTSANVSGEPTPQNFSQ-ITDEIKNAVDYVVNFRREELSLPKPSSIIKLGK 178

Query: 186 EKKVRILR 193
               +++R
Sbjct: 179 GNLFQLIR 186


>gi|116626156|ref|YP_828312.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076]
 gi|116229318|gb|ABJ88027.1| translation factor SUA5 [Candidatus Solibacter usitatus Ellin6076]
          Length = 212

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 7/201 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL +A   +  G  +AIPT+ +Y L  D  N  A+  +++ K R     L   + D  
Sbjct: 15  PEALERAAAAVRRGKVVAIPTDALYTLVADPYNLRAVTGVFQAKGREPHRALPILIRDSM 74

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
           M ++ A  ++     LA+ FWPGPLT+++   +   I    T N      R        K
Sbjct: 75  MAEELASELNNRFFILARRFWPGPLTVIVPAAAK--IPLKVTGNTGRLALRHARSPVADK 132

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           LI     PL   SAN SG  +  +   +    +   + L++DGG   +G  ST V++  E
Sbjct: 133 LIALLNQPLISTSANISGHPTCHSGIDVFG-MMDGRVDLVLDGGTC-VGEGSTTVDIT-E 189

Query: 187 KKVRILRPGGLEIETLKRAIS 207
              R+++ G +  + +   + 
Sbjct: 190 PYWRMIKEGAISEKEIAECLK 210


>gi|320534366|ref|ZP_08034852.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320133408|gb|EFW25870.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 205

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + K  + L  G  +A PT++ Y LA    N   + R+  I++    +      +D  
Sbjct: 14  ARLVEKVVDTLRDGGLVAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFG 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V   A V   +  L K   PGP T +L          L+     T   R+P    T+ L
Sbjct: 74  QVGPLAIVGNNAFRLIKRLTPGPWTFILKGTKDVPRMTLNPKKH-TLGVRIPDHAITQSL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G P+   +  R GQ         +  S+   I ++I+G + + G  +T+V++  + 
Sbjct: 133 VAEFGAPILSSTFIRPGQEEPETNGWEIQDSLGHLIDVVIEGPVGQ-GESTTVVDLTDDV 191

Query: 188 KVRILRPGGLEIETL 202
              +LR G  +I  L
Sbjct: 192 P-EVLREGAGDISLL 205


>gi|212634746|ref|YP_002311271.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella piezotolerans WP3]
 gi|212556230|gb|ACJ28684.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella piezotolerans WP3]
          Length = 206

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  I  PT++ Y L     +  A+ R+  I++    +       D S
Sbjct: 14  ARLISQAVNVIQQGGVIVYPTDSGYALGCLLGDKDAMSRIARIRQIDNDHNFSLMCRDQS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD  +  + K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELATYARVDNQAYRVLKHNTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S    G+    +    +   +  ++ LII GG       +T++++  E 
Sbjct: 133 LEALDAPLMSTSLILPGEEFTESDPEHIRDVLEHQVDLIIHGGYLGE-KPTTVIDM-SEG 190

Query: 188 KVRILRPGGLEI 199
            + ++R G  ++
Sbjct: 191 DIEVIREGAGDV 202


>gi|184200616|ref|YP_001854823.1| hypothetical protein KRH_09700 [Kocuria rhizophila DC2201]
 gi|183580846|dbj|BAG29317.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 354

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 13/213 (6%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPL 79
            G  + +PT+TVYG+  D+ +   ++ L   K R    P    ++   ++   A  +   
Sbjct: 26  DGECVVLPTDTVYGIGCDAFSAPGVQGLLGAKGRTREMPPPVLIARPEVMDALADEISDD 85

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
           +  LA+ FWPG LT+V     +       T    T   RVP     + +     P+A+ S
Sbjct: 86  ARALARAFWPGALTIVCWARPSLGWDLGET--HGTVALRVPDDAVTRAVLERVGPMAVSS 143

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--------STIVNVQCEKKVRI 191
           ANR+G  +    +      +   + L ++ G   +           STIV+   E  V +
Sbjct: 144 ANRTGMPAARTAEQA-REMLQDRVALYLEAGPRPVREPAAGARDAASTIVDCTGETPV-V 201

Query: 192 LRPGGLEIETLKRAISVELEYCVDETSTPQSPG 224
           LR G + ++ L+  +        ++   P  PG
Sbjct: 202 LRHGAITLQRLREVVPAVHGGGTEDAPAPTEPG 234


>gi|296537237|ref|ZP_06899140.1| Sua5/YciO/YrdC family protein [Roseomonas cervicalis ATCC 49957]
 gi|296262436|gb|EFH09158.1| Sua5/YciO/YrdC family protein [Roseomonas cervicalis ATCC 49957]
          Length = 185

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 9/178 (5%)

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P     + L+   G P+  PSANRSG +S T   H+L   +   I  ++DGG   +G+E
Sbjct: 1   MPAHPLAQALLRAAGVPVVAPSANRSGAVSPTTAAHVL-EGLSGRIAAVLDGGPCAVGVE 59

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISV--ELEYCVDETSTPQSPGMLKSHYAPRSQ 235
           ST++++     + +LRPGG+  + L+  +      +  + E +   +PGML SHYAP   
Sbjct: 60  STVLDLTGATPL-LLRPGGVPEDALRALLGPIGRPDPALAEDAARPAPGMLASHYAPALP 118

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSG 293
           VRL A  V+P+EAL+ FG      +  A     LS++G   EAA  LF  ++  D  G
Sbjct: 119 VRLEAESVSPQEALLAFGPA----LPGAGAVWQLSESGDTMEAAARLFAGLRWLDAEG 172


>gi|149375615|ref|ZP_01893384.1| putative translation factor [Marinobacter algicola DG893]
 gi|149360017|gb|EDM48472.1| putative translation factor [Marinobacter algicola DG893]
          Length = 191

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   +  G  IA PTE V+GL  D  +  A+ R+  +K+RP    LI   + +  ++
Sbjct: 13  LHCARRTVLGGGVIAYPTEAVWGLGCDPWDQEAVERVLSLKQRPMEKGLILVAASVDQIR 72

Query: 72  KHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 P      A   WPGP+T +L  +    I         +   RV      + L E
Sbjct: 73  FLLDPLPKEQQRQAMSHWPGPVTCLLPDVRQ-QIPQQVRGRHSSIAVRVSDHPVVRALCE 131

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   S N +G+        +       E+  ++ G +      S I+++   K++
Sbjct: 132 AAGFPLVSTSCNPAGRQPARTSWQV-RRYFEGELDWLVPGELGGNRQPSRIIDIVSGKQL 190

Query: 190 R 190
           R
Sbjct: 191 R 191


>gi|77456248|ref|YP_345753.1| SUA5/yciO/yrdC-like [Pseudomonas fluorescens Pf0-1]
 gi|123606494|sp|Q3KKE2|RIMN_PSEPF RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|77380251|gb|ABA71764.1| translation factor SUA5 [Pseudomonas fluorescens Pf0-1]
          Length = 185

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 70/188 (37%), Gaps = 6/188 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    
Sbjct: 1   MVNSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD 60

Query: 66  DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF- 123
           +I          P          WPGP T ++       +    T    T   RV     
Sbjct: 61  NIRQFDFLFEDFPQDWIDRMASTWPGPNTWLVPHQ--NLLPEWVTGVHDTVALRVSDHPQ 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + L    G PL   SAN  G+ +      +       ++ L++ G +      S I ++
Sbjct: 119 VRDLCSLVG-PLISTSANPQGRPAARTRLRV-EQYFRGQVDLVLGGALGGRKNPSLIRDL 176

Query: 184 QCEKKVRI 191
                VR 
Sbjct: 177 ATGNIVRP 184


>gi|154492885|ref|ZP_02032511.1| hypothetical protein PARMER_02524 [Parabacteroides merdae ATCC
           43184]
 gi|154087190|gb|EDN86235.1| hypothetical protein PARMER_02524 [Parabacteroides merdae ATCC
           43184]
          Length = 186

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++KACE + AG  I  PT+T++G+  D+ N  A++++YE+KKR     ++      +
Sbjct: 2   TEDIQKACEIMQAGGIILYPTDTIWGIGCDATNEKAVQKVYELKKRTDNKAMLVLTDSSA 61

Query: 69  MVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            +  + S    ++  L ++    PLT++       ++         +   RV    F++K
Sbjct: 62  KLSMYVSDMPDIAWDLIEVA-DKPLTIIYPHAK--NLASNLLGEDGSVGIRVTNEEFSRK 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQ 184
           L E +  PL   SAN SG+ S  N   + S SI   +  I+      +     S I+ + 
Sbjct: 119 LCERFRRPLVSTSANVSGEPSPGNFSEV-SDSIKNGVDYIVKYRQDDMSKAKPSNIIKLG 177

Query: 185 CEKKVRILR 193
               ++++R
Sbjct: 178 DGGVIQVIR 186


>gi|89898303|ref|YP_515413.1| translation factor SUA5 family protein [Chlamydophila felis
           Fe/C-56]
 gi|89331675|dbj|BAE81268.1| translation factor SUA5 family protein [Chlamydophila felis
           Fe/C-56]
          Length = 289

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 15/215 (6%)

Query: 3   IMSITDSNA-LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
            MS  D +  L++A ++L  G  IA PT+TVYGL V    P A  ++Y +K+R      +
Sbjct: 6   FMSGIDPDFFLQQAEDYLHKGKVIAFPTDTVYGLGVALNYPNAEEQIYALKRRDRGKSFV 65

Query: 62  CHVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +V+ I  ++K +  ++   +L L++ F PGPLTL++D       H       +   FR+
Sbjct: 66  VYVNTIEDIEKISGHNLSLSALKLSQKFLPGPLTLLVD-------HKNPRFTQEKLGFRI 118

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 + +     PL   SAN S        + ++      +  L +  G    GLEST
Sbjct: 119 LSLPIIEKLIHITGPLLGTSANISSFPPAITSEEVIEDF--SKEDLFVIPGKCTYGLEST 176

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
           IV+V     ++I R G + ++ ++  +  ++E C+
Sbjct: 177 IVSV---NPLKIYREGIIPLQHIEEVLGEKIESCL 208


>gi|312888915|ref|ZP_07748476.1| translation factor SUA5 [Mucilaginibacter paludis DSM 18603]
 gi|311298605|gb|EFQ75713.1| translation factor SUA5 [Mucilaginibacter paludis DSM 18603]
          Length = 188

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 6/188 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + +  A + L  G  I  PT+T++G+  D+ NP A++++Y +K+R     +I  V   +
Sbjct: 3   KDEVNAALKVLQDGGIILYPTDTIWGIGCDAGNPEAVKKIYALKQRDEAKSMIVLVDSEN 62

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
            ++ + S V  ++  L + +   PLTLV+      ++ P   A   +   RV    F ++
Sbjct: 63  KLESYISQVADVAYDLIE-YAENPLTLVMPGAK--NLAPNLIAADGSVGIRVTKHPFCQQ 119

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQC 185
           LI+    PL   SAN SGQ S  N   I +  I     ++ ++         STI+ ++ 
Sbjct: 120 LIQRLRKPLVSTSANISGQPSPKNFNSISADIIDGVDYVVNLEQHDLSEKRPSTIMRIEP 179

Query: 186 EKKVRILR 193
           + +   +R
Sbjct: 180 DGRFEFIR 187


>gi|332996764|gb|EGK16389.1| ribosome maturation factor [Shigella flexneri K-272]
          Length = 172

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 7/161 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +        +        WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            L + YG PL   SAN SG      V  +  +      P++
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFPVV 165


>gi|88855317|ref|ZP_01129981.1| translation factor [marine actinobacterium PHSC20C1]
 gi|88815224|gb|EAR25082.1| translation factor [marine actinobacterium PHSC20C1]
          Length = 218

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 9/205 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R A   +  G  + IPT+TVYG+A D+  P A+++L + K R   +P    +  I  
Sbjct: 15  TGMRLARVAIGRGDLVVIPTDTVYGVAADAFQPDAVQKLIDAKGRTRQSPPPVLIPGIPT 74

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +    A V      L   FWPG LT++L    +  +         T   R+P       +
Sbjct: 75  LDALAAEVPDEVRTLVAEFWPGGLTIILPAQPS--LSWDLGDTHGTVALRMPSSRIALEL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC--- 185
            +   PLA+ SAN +G  +  +        +   + + +D G     L STIV+      
Sbjct: 133 LSETGPLAVSSANSTGLPAARSAAEA-QQMLGDSVSVYLDEGEGGE-LASTIVDATGLLT 190

Query: 186 -EKKVRILRPGGLEIETLKRAISVE 209
              K+RI+R G +  E +++ I  +
Sbjct: 191 EGGKLRIVREGVIPSEAIRKLIGAD 215


>gi|90019673|ref|YP_525500.1| translation factor SUA5 [Saccharophagus degradans 2-40]
 gi|123396836|sp|Q21PU1|RIMN_SACD2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|89949273|gb|ABD79288.1| translation factor SUA5 [Saccharophagus degradans 2-40]
          Length = 191

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 5/182 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +    L  G  IA PTE V+GL  D  N  A+ ++  +KKRP    LI   + I  + 
Sbjct: 13  LTQCVRTLLQGGVIAYPTEAVWGLGCDPDNDHAVEKILRLKKRPVHKGLILVAASIEQLD 72

Query: 72  KHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                 +P      +  WPG  T ++       + P+ T    T   RV      K L E
Sbjct: 73  FLLHDLEPEYYQKLEASWPGANTWLIPHKG--RVSPMVTGKHATVAVRVSNHPIVKALCE 130

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+   SAN  G  +  +   +      KE      G +      S I ++  +  +
Sbjct: 131 GFGGPIVSTSANPMGLSAAKSQMQV-RRYFAKEALSYATGVVGGRSTPSVIRDLYTDAII 189

Query: 190 RI 191
           R 
Sbjct: 190 RA 191


>gi|328950484|ref|YP_004367819.1| Sua5/YciO/YrdC/YwlC family protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450808|gb|AEB11709.1| Sua5/YciO/YrdC/YwlC family protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 197

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 17/198 (8%)

Query: 13  RKAC---EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           R+A    + L  G  +A PT+TV+GL     +  A RR+Y IK R A  PL   VS +  
Sbjct: 3   REAVTTLQVLRNGGVVAFPTDTVWGLLARMEDEAACRRIYRIKGRAAEKPLQVLVSSVEA 62

Query: 70  VKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
             + A +   +P+ L LA+ FWPGPLT+V+   +   I P  + +  T   R+P      
Sbjct: 63  ALELAELGPHEPVFLELAREFWPGPLTIVVPGQA---IPPWISPD-GTVGLRMPAHDELL 118

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +++   G   A  S N+SG     + +  L+      +  +   G +  G+ S++V++  
Sbjct: 119 EILAGVGGHAAATSLNQSGAPPARSYEEALT--FAPLVDRV-HPGDTPAGVASSVVDLVR 175

Query: 186 EKKVRILRPGGLEIETLK 203
            +   +LR GG+    LK
Sbjct: 176 GQ---VLREGGVPASALK 190


>gi|187479076|ref|YP_787101.1| hypothetical protein BAV2596 [Bordetella avium 197N]
 gi|115423663|emb|CAJ50208.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 208

 Score =  152 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A +++  G  IA+PT++ Y +A    +  A  RL  ++     + L     D++
Sbjct: 14  PRLLKQAAQWIGDGGLIAVPTDSSYAVAARLDDKDAADRLRRLRGLDERHHLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + + A VD     L KL  PGP T +L+         +S  + KT   RVP       L
Sbjct: 74  EIGQFAKVDNRQYRLLKLATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPDHAVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    N    +S     ++  +ID G       +T++++  ++
Sbjct: 133 LEQVGAPLLSTTLIPKGEDDALNDAEAISLRFAHDLAAVIDAGACPQH-PTTVIDLTGDE 191

Query: 188 KVRILRPGG 196
            V + R  G
Sbjct: 192 PVVLRRGRG 200


>gi|220913095|ref|YP_002488404.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus
           A6]
 gi|219859973|gb|ACL40315.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus
           A6]
          Length = 266

 Score =  152 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 13/219 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + AL  A   +     + +PT+TVYG+A D+ +P A+  L   K R    P    +  I+
Sbjct: 14  AEALEHAQRAISEKKCVVLPTDTVYGIAADAFSPQAVTMLLVSKGRSRTMPPPVLIPRIN 73

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +   A  +   +  LA+ FWPG LTL+     + D     T    T   R+P     + 
Sbjct: 74  ALDGLATDISAEARKLAEAFWPGGLTLIFHAQPSLDWDLGETKG--TVALRMPADEIAQE 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG----ISKIGLESTIVNV 183
           + T   PLA+ SANR+G              +   + + ++GG         + STIV+ 
Sbjct: 132 LLTLTGPLAVSSANRTGHAPAQTAA-AAREQLADSVEVYLEGGFRPAEGADAVPSTIVDA 190

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
               ++R++R G + ++ L+  +   L         P +
Sbjct: 191 TG-PRLRVVRNGAVSLDQLREHVPGVLGL----GEIPMA 224


>gi|56972134|gb|AAH88428.1| Yrdc protein [Rattus norvegicus]
          Length = 272

 Score =  152 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 60  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 119

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +  +PGP+TLV++   + +++            R+P   F   L
Sbjct: 120 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMLDL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +G PLA+ SAN S Q S  +V+      +   + L+IDGG        +  L ST+V
Sbjct: 177 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSESPECRLGSTVV 234

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+R G 
Sbjct: 235 DLSVPGKFGIIRSGC 249


>gi|329929001|ref|ZP_08282803.1| SUA5 domain protein [Paenibacillus sp. HGF5]
 gi|328936990|gb|EGG33419.1| SUA5 domain protein [Paenibacillus sp. HGF5]
          Length = 221

 Score =  152 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 23/184 (12%)

Query: 161 KEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-----VELEYCVD 215
             I  ++DGG + +G+EST+V V  +  V +LRPGG+  E L    +       L+    
Sbjct: 28  GAIDGVLDGGPAGVGVESTVVQVGEDGAVTVLRPGGVTAEQLAAVAASVRQDPALQRAAG 87

Query: 216 ETS--TPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIK--------------- 258
           E     P+SPGM  +HYAP+  + +         +      +                  
Sbjct: 88  EAESPAPRSPGMKYTHYAPKGAMCVVQGPRADTVSARIAAELEAAARRGEVTGVLSFDEH 147

Query: 259 -NIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                A ++++L      +EAA  L+  ++  D+ GA+ I   + P+ GLG A+ NRL +
Sbjct: 148 IGHYAADVAVSLGSLAAPEEAARRLYAGLRRFDEEGATFILAEACPDQGLGAAVMNRLLK 207

Query: 318 AAAP 321
           AA  
Sbjct: 208 AAGH 211


>gi|300718668|ref|YP_003743471.1| hypothetical protein [Erwinia billingiae Eb661]
 gi|299064504|emb|CAX61624.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 200

 Score =  152 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++      L     IA PTE V+GL  +  + +A+  L  +K+RP    LI   ++ +
Sbjct: 17  PGSVEACIHQLRQNAVIAYPTEAVFGLGCNPDSESAVMALLALKQRPVEKGLILIAANYA 76

Query: 69  MVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            ++ +                 WPGP+T V+   ++T      T    +   RV      
Sbjct: 77  QLQPYIDDLGLTDAQKEKMFASWPGPVTWVMPSRTST--PRWLTGRFDSLAVRVTDHPDV 134

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           ++L   +G PL   SAN +G         +       + P+ + G        S I +V 
Sbjct: 135 QRLCLGFGKPLVSTSANLTGLEPCRTAAEV-HQQFGSDFPVFL-GNTGGRLNPSEIRDVL 192

Query: 185 CEKKVR 190
             + +R
Sbjct: 193 TGELIR 198


>gi|294778304|ref|ZP_06743730.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510]
 gi|294447932|gb|EFG16506.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides vulgatus PC510]
          Length = 204

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 9/195 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L +    L+ G  I  PT+T+Y +        AI R+ ++K   P  N L   
Sbjct: 8   KNNNPKDLEEVIRVLEEGGLIIYPTDTMYAIGCHGLKERAIERICKLKNIDPRKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
             D+S + ++A VD  +  L K   PGP T +L+   T +  P    N K    RVP   
Sbjct: 68  CYDLSNISEYAKVDNSTFKLMKRNLPGPFTFILN---TGNRLPKIFKNRKEVGIRVPDNN 124

Query: 123 FTKKLIETYGHPLAIPSANRSG--QISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             +++      P+   +        I       ++     KE+ LIIDGGI  I   STI
Sbjct: 125 IIREICHILKAPIMTTTLPLKDGEDIEYITTPELIEEKFGKEVELIIDGGIGGI-EPSTI 183

Query: 181 VNVQCEKKVRILRPG 195
           VN     +  I+R G
Sbjct: 184 VNCT-NGEAEIVRQG 197


>gi|76781474|ref|NP_783194.2| yrdC domain-containing protein, mitochondrial precursor [Rattus
           norvegicus]
 gi|123781639|sp|Q499R4|YRDC_RAT RecName: Full=YrdC domain-containing protein, mitochondrial;
           AltName: Full=Ischemia/reperfusion-inducible protein
           homolog; Flags: Precursor
 gi|71681008|gb|AAH99797.1| YrdC domain containing (E.coli) [Rattus norvegicus]
          Length = 280

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 68  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVA 127

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +  +PGP+TLV++   + +++            R+P   F   L
Sbjct: 128 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMLDL 184

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +G PLA+ SAN S Q S  +V+      +   + L+IDGG        +  L ST+V
Sbjct: 185 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSESPECRLGSTVV 242

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+R G 
Sbjct: 243 DLSVPGKFGIIRSGC 257


>gi|256827626|ref|YP_003151585.1| Sua5/YciO/YrdC/YwlC family protein [Cryptobacterium curtum DSM
           15641]
 gi|256583769|gb|ACU94903.1| Sua5/YciO/YrdC/YwlC family protein [Cryptobacterium curtum DSM
           15641]
          Length = 220

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L +    L AG P+  PT+TVYG+ V      + + +Y+ K+R    P+   V  I  
Sbjct: 24  ENLERTVAALRAGYPVIFPTDTVYGIGVSVDAAESPKAIYQAKERDLSKPVAWLVDSIEA 83

Query: 70  VKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +  +    P + H      WPGPLTLV+           STA   T   R+P     ++L
Sbjct: 84  LDVYGDAVPAAAHALAHAQWPGPLTLVVKASERVPAAFTSTAG--TIGLRMPNHAIAREL 141

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+A  SAN S   S    + I  +   K + ++ D      G+ ST+V+     
Sbjct: 142 IRRLGCPIATSSANISAHPSTAYAQGIDPALSDKVVAVLADDSQGASGISSTVVDCTSS- 200

Query: 188 KVRILRPGGLEIETLKRA 205
            +RILR G +    ++  
Sbjct: 201 PLRILREGSISAADVRAI 218


>gi|160900844|ref|YP_001566426.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1]
 gi|160366428|gb|ABX38041.1| Sua5/YciO/YrdC/YwlC family protein [Delftia acidovorans SPH-1]
          Length = 214

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + L  G  +AIPT++ Y L     +  A+ RL  I++    + L     D+S
Sbjct: 14  PRLIKQAADMLRQGAILAIPTDSSYALVCHLDDRPAVERLRRIRQINDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +A VD     L KL  PGP T +L+         LS  + KT   RVP    T+ L
Sbjct: 74  ELSSYARVDNRQYRLLKLATPGPYTFILEASKEVP-KRLSHPSRKTIGLRVPDRKGTQLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV---Q 184
           +E  G PL   +    G+    +    +      E+  I+D G       +T++++    
Sbjct: 133 LEQLGEPLIATTLIPPGETEALHDADAILERFPHELDAIVDAGACPS-EPTTVIDLVPMA 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R G   ++ L
Sbjct: 192 LGNPPTVVRQGRGSLDAL 209


>gi|269794322|ref|YP_003313777.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542]
 gi|269096507|gb|ACZ20943.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542]
          Length = 251

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 10/218 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +A   + AG  + +PT+TVYG+  D+ +  A+  L   K R    P    V  ++ +
Sbjct: 18  SLDEAVNTVQAGALVVLPTDTVYGIGADAFDADAVAALLAAKGRGRQMPPPVLVGSVATL 77

Query: 71  KKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
              A  V   +  LA  FWPG LTL+L    +  +         T   R+P   T   + 
Sbjct: 78  DGLATEVPEAARALATRFWPGALTLILTAQPS--LAWDLGDTHGTVALRMPDHPTALALL 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+A+ SAN +G  + T V+    + +   +   +D G +  G+ STIV+   E  +
Sbjct: 136 ARTGPMAVSSANLTGGPAATTVEEA-HAQLGSSVRTYLDAGAAPGGVASTIVDATGE-TL 193

Query: 190 RILRPGGLEIETLKRAISVE-----LEYCVDETSTPQS 222
           R++R G + +E L+    VE     +    DE S   +
Sbjct: 194 RVVRAGAISLEELRTVTHVEDVLPPVPEPADEASAEPA 231


>gi|71065086|ref|YP_263813.1| translation factor SUA5 [Psychrobacter arcticus 273-4]
 gi|71038071|gb|AAZ18379.1| translation factor SUA5 [Psychrobacter arcticus 273-4]
          Length = 207

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 8/207 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ+  I   N     + +    L     I  PT+T Y          A+ +L  I++   
Sbjct: 1   MQVFYIHPENPQPRLIEQVANLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKHIRELDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +       D+S +  +A+VD +     K   P P+T +L+         L+ A  KT  
Sbjct: 61  KHQFTLLCRDLSEIANYAAVDNVQFKQLKAHTPAPITFILNATKDVP-KKLAHAKKKTIG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + L+E    P+   S     + +I +    +   +  +I  +I+ GI    
Sbjct: 120 IRVPSNAIAQALLEAMDEPILTSSLILPNRDNILDDPFEIEELLGNQIDGLINAGIKTTK 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202
           L +TIV++   +   ++R G  ++++L
Sbjct: 180 L-TTIVDMTSSQP-EVIRQGAADVDSL 204


>gi|319943942|ref|ZP_08018222.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599]
 gi|319742703|gb|EFV95110.1| Sua5/YciO/YrdC/YwlC family protein [Lautropia mirabilis ATCC 51599]
          Length = 206

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 8/209 (3%)

Query: 1   MQIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+ + I         +R+  E    G  +A+PT+  Y LA    + TA+ R+ +++    
Sbjct: 1   MKRIEIHPVNPQPRLIRQVAEQFQTGALVALPTDASYVLACHLEDRTAVDRMRQLRGIDE 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            + L     D+S + ++A VD       K + PG  T +L          L   + KT  
Sbjct: 61  KHLLTLLCRDLSELSQYAQVDNRQFRFLKEWTPGAYTFILPATREVP-RRLMHPSRKTVG 119

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + L+   G PL   S    G  +  +    +   I K I L++DGG  ++ 
Sbjct: 120 LRVPEAPIVQALLAELGVPLLCASLILPGDENPLSDPDDIEDRIGKRIDLLVDGGAGQL- 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKR 204
             +++++V  ++ V I R G   +E + R
Sbjct: 179 EATSVIDVTGDEPV-IQRVGLGPVEAMLR 206


>gi|302529113|ref|ZP_07281455.1| translation factor SUA5 [Streptomyces sp. AA4]
 gi|302438008|gb|EFL09824.1| translation factor SUA5 [Streptomyces sp. AA4]
          Length = 206

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 4/195 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL +  + L     IA PT++ + L     N   + R+  I+K    +       D + 
Sbjct: 15  RALSQVVDLLRDDGLIAYPTDSCFALGCRLGNQQGMERIRTIRKLDHRHHFTLVCQDFAQ 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLI 128
           + +   +D       K   PGP T +L          L  A  KT   R+P     ++L+
Sbjct: 75  LGQFVHIDNAVFRAIKASTPGPYTFILPATKEVP-RRLLHAKKKTVGVRIPDHVVTQELL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G P+   +               +   +   +  +ID G   +   +T+++     +
Sbjct: 134 GELGEPILSSTLLLPDSGEPLTQGWEIKEELDHVLDAVIDSGDCGV-EPTTVIDFSS-GE 191

Query: 189 VRILRPGGLEIETLK 203
             ++R G  +    +
Sbjct: 192 AEVVRHGAGDPSRFE 206


>gi|56478937|ref|YP_160526.1| putative translation factor YrdC/SUA5 [Aromatoleum aromaticum EbN1]
 gi|56314980|emb|CAI09625.1| putative translation factor YrdC/SUA5 [Aromatoleum aromaticum EbN1]
          Length = 209

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E + +G  +  PT++ Y L   + + + + R+  I+     +       D+S
Sbjct: 14  PRLIRQAAEIMRSGGLVTFPTDSAYALGGLAGDASVLLRIRRIRGVDERHHFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD +   L K   PGP T +L+         +     KT   RVP       L
Sbjct: 74  EIATYARVDNMQYRLLKATTPGPYTFILEGTKELP-RRVLHPKRKTIGLRVPDHPVVAAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+   +    G+         +   + K++ L+I+ G       +T++++    
Sbjct: 133 LAELDEPILTSTLLLPGEDLPLTDAEEIRDRMEKQVELVIEAGFCGP-EATTVLDLTSGV 191

Query: 188 KVRILRPGG 196
            V +    G
Sbjct: 192 PVLVRAGKG 200


>gi|320528641|ref|ZP_08029794.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204]
 gi|320131007|gb|EFW23584.1| Sua5/YciO/YrdC/YwlC family protein [Solobacterium moorei F0204]
          Length = 199

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 8/185 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L     I++PT+TVYG+     +  A   L  +K+RP         +D++ +++ A V+ 
Sbjct: 16  LKKDGVISVPTDTVYGVCSQVFSHQAEENLRNVKRRPLTKAFPVMCADLAQIQEIAEVNE 75

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETYGHPLAI 137
            +  + + F PGP+T++L      +   LS  NL T   R+       K+I+  G P+ +
Sbjct: 76  RAKKVIEGFMPGPITVILKRKDGVN---LSQENLDTIAIRMATSNTLAKIIKGLGRPIFM 132

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            SAN+SG+ + T++  I     C ++  +++G +S  G  STIV+    K++ ILRPG +
Sbjct: 133 TSANQSGEPTCTSLDEI--EKSCPDLDGMVEGDVS-FGEASTIVDCTK-KELAILRPGPI 188

Query: 198 EIETL 202
            ++ +
Sbjct: 189 TMQDI 193


>gi|294649549|ref|ZP_06726969.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824536|gb|EFF83319.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 205

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 8/208 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + I   N     + +A + + AG  +  PT+  Y +     N +A+ R+ +I+    
Sbjct: 1   MLHLHIHPENPQARLITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +       D+S +  +A VD     L K   P   T +L   S      L     KT  
Sbjct: 61  KHQYAIMCCDLSDIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVP-KRLMHPKKKTIG 119

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + L++  G PL   +     Q    +  + + S + K I + ID G   + 
Sbjct: 120 LRIPSNPVAQALLKELGEPLLTSTLILPDQKDPLDDPYDIESQLGKRIDVFIDSGFGTLS 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203
             S IV++  E    I+R G  ++   +
Sbjct: 180 TTS-IVDLSGENP-EIIRRGVGDVSAFE 205


>gi|292493439|ref|YP_003528878.1| SUA5/yciO/yrdC domain protein [Nitrosococcus halophilus Nc4]
 gi|291582034|gb|ADE16491.1| SUA5/yciO/yrdC domain protein [Nitrosococcus halophilus Nc4]
          Length = 186

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 9/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   +  G  +A PTE V+GL  D     A+ R+ ++K R     LI   +D + ++
Sbjct: 9   VRLAARMIHGGGVVAYPTEGVFGLGCDPLQGAAVERILKLKGRSVDKGLILIAADFAQLQ 68

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  + PL+  +       WPGP+T +L   +  D+         T   RV        L
Sbjct: 69  SY--LLPLTAQIRARLEGTWPGPVTWLLPARA--DVPRWLRGRHDTLAVRVTAHPLAACL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            +  G  +   SANR+G+        +   S+   I  I+ G I +    S I + +  +
Sbjct: 125 CQRVGSAIVSTSANRAGRPPARTTLQV-RRSLGAGIDYILPGAIGRRAGPSEIRDGRTGQ 183

Query: 188 KVR 190
           ++R
Sbjct: 184 RIR 186


>gi|167752335|ref|ZP_02424462.1| hypothetical protein ALIPUT_00579 [Alistipes putredinis DSM 17216]
 gi|167660576|gb|EDS04706.1| hypothetical protein ALIPUT_00579 [Alistipes putredinis DSM 17216]
          Length = 192

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 6/191 (3%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T   A+ +A   L  G  I  PT+TV+G+  D+ N  A+ R+Y +K+      ++   + 
Sbjct: 5   TMEQAVTEAVRILREGGVILYPTDTVWGIGCDATNAEAVERIYRLKRSENKKSMLVLCAT 64

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
             MV ++    P      +     PLTL+L     + +         T   R+P   F +
Sbjct: 65  PDMVVRYVHKAPGIAFEVQELATKPLTLILP--GASGVAANLIPEEGTLGVRIPDHAFCQ 122

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNV 183
            ++   G P+   SAN SG+ +  N+  I    I   +  +++        G  S+I+  
Sbjct: 123 AMLRKLGRPIVSTSANISGEDTPRNLAEISREIIDG-VDYVVNPKFEGKPTGKASSILLF 181

Query: 184 QCEKKVRILRP 194
               + RI+R 
Sbjct: 182 NEAGEFRIIRE 192


>gi|255071095|ref|XP_002507629.1| predicted protein [Micromonas sp. RCC299]
 gi|226522904|gb|ACO68887.1| predicted protein [Micromonas sp. RCC299]
          Length = 289

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 5/217 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           ++I+  T    +  A + L     IA+PT+T+YGLA  + +  +IRRLY  K+R    P+
Sbjct: 76  LRILPATSQR-VTDAVDALRRERIIAVPTDTLYGLAAGAHSDKSIRRLYAAKRRSETVPI 134

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              VSD   V+++A    L+  L     PGP+T++L   S+ D+      N +    R+P
Sbjct: 135 AICVSDAKDVERYADTKHLAEGLLDELLPGPVTVLLSQKSSADLPSSLNPNSRLMGIRIP 194

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178
              F + +   YGH LA+ SAN+SG  S  ++     + +  +   + DGG    G + S
Sbjct: 195 KSDFIRAVARQYGHALALTSANQSGSASTLDLNE--FTELWDDCAFVFDGGRIVSGRVGS 252

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVD 215
           +IV++       + R G    +T K  +   L    D
Sbjct: 253 SIVDLSLPGTFSVQRRGDKYEDTRKTLMKFGLRQLPD 289


>gi|77166277|ref|YP_344802.1| putative translation factor, SUA5/yciO/yrdC-like [Nitrosococcus
           oceani ATCC 19707]
 gi|254435884|ref|ZP_05049391.1| hypothetical protein NOC27_2947 [Nitrosococcus oceani AFC27]
 gi|123593358|sp|Q3J7C4|RIMN_NITOC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|76884591|gb|ABA59272.1| translation factor SUA5 [Nitrosococcus oceani ATCC 19707]
 gi|207088995|gb|EDZ66267.1| hypothetical protein NOC27_2947 [Nitrosococcus oceani AFC27]
          Length = 185

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 5/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   +  G  IA PTE V+GL  D     AI R+ ++K R      I   +D   ++
Sbjct: 8   VRLAARIIRGGGVIAYPTEGVFGLGCDPGRKAAIERILQLKGRSISKGFILIAADFVQLQ 67

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            +   +   +    ++ WPGP+T +L   +  D+ P       T   RV        L  
Sbjct: 68  SYLLPLTASTRSRLEVTWPGPVTWLLP--ARGDVPPWLRGRYDTLAVRVTAHPLAACLCR 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T GH L   SANR+G+        +   S    +  I+ G   K    S I + +  +++
Sbjct: 126 TLGHALVSTSANRAGRPPAQTTLQV-RRSFGSSLDYILPGITGKRAGPSEIRDGRTGQRL 184

Query: 190 R 190
           R
Sbjct: 185 R 185


>gi|126668173|ref|ZP_01739134.1| hypothetical protein MELB17_23665 [Marinobacter sp. ELB17]
 gi|126627322|gb|EAZ97958.1| hypothetical protein MELB17_23665 [Marinobacter sp. ELB17]
          Length = 190

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   L  G  +A PTE V+GL  D  N  A++R+ ++K+RP    +I   + +  +
Sbjct: 11  QLHCARRTLHQGGVLAYPTEAVWGLGCDPWNQVAVQRILDLKQRPVHKGMILVAASVEQI 70

Query: 71  KKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                ++PL   L   A+  WPGP+T +L  +    +         +   RV      K 
Sbjct: 71  VFL--LNPLPQDLQQRARQHWPGPVTCLLPDV-HQQVPEWVRGEHSSIAVRVSAHPVVKA 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L    G PL   S N +G+    +   +       ++  ++ G +      S I+++   
Sbjct: 128 LCNAVGSPLVSTSCNPAGRAPARSPWQVQG-YFHGQLDWVVPGALGGNRQPSRIIDIVTG 186

Query: 187 KKVR 190
           +++R
Sbjct: 187 QQLR 190


>gi|160883231|ref|ZP_02064234.1| hypothetical protein BACOVA_01200 [Bacteroides ovatus ATCC 8483]
 gi|237719187|ref|ZP_04549668.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260171883|ref|ZP_05758295.1| putative translation factor [Bacteroides sp. D2]
 gi|293372316|ref|ZP_06618701.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f]
 gi|299148260|ref|ZP_07041322.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23]
 gi|315920195|ref|ZP_07916435.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156111456|gb|EDO13201.1| hypothetical protein BACOVA_01200 [Bacteroides ovatus ATCC 8483]
 gi|229451566|gb|EEO57357.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292632758|gb|EFF51351.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides ovatus SD CMC 3f]
 gi|298513021|gb|EFI36908.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_23]
 gi|313694070|gb|EFS30905.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 187

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++     A   +   RV    F+++L
Sbjct: 63  VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLASNLLAEDGSVGIRVTNEDFSRRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I+      +     S+I+ ++ 
Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGFRQDDMSRPRPSSIIKLEK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|24374541|ref|NP_718584.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1]
 gi|24349133|gb|AAN56028.1|AE015738_3 Sua5/YciO/YrdC/YwlC family protein [Shewanella oneidensis MR-1]
          Length = 206

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L +G  I  PT++ Y L        A+ R+  I++    +       D+S
Sbjct: 14  ARLISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD  +  + K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELATYAKVDNQAYRILKSCTPGPYTFIFKASKEVP-RRLQNDKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S          +    +   +  ++ +II GG       +T++++  + 
Sbjct: 133 LEALDAPLMSTSLVMPDAEFAESDPEQIRDLLEHQVDVIIHGGYLGE-KPTTVIDMSEDG 191

Query: 188 KVRILRPGGLEI 199
              +LR G  ++
Sbjct: 192 -FEVLREGAGDV 202


>gi|300741302|ref|ZP_07071323.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa M567]
 gi|300380487|gb|EFJ77049.1| Sua5/YciO/YrdC/YwlC family protein [Rothia dentocariosa M567]
          Length = 325

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 16/199 (8%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VD 77
           ++A   I IPT+TVYG+A D+ +   + +L   K R    P    + D++ +   A  + 
Sbjct: 1   MNAHETIVIPTDTVYGIACDAFSHQGVSKLLADKGRSRTMPPPVLIFDLAALAGVADEIP 60

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
                L   FWPG LT++L    +       T    T   RVP   F  KL+  +G PLA
Sbjct: 61  NDVYDLGNKFWPGALTIILYSYPSLTWDLGET--QGTVAVRVPDDKFALKLLTEHG-PLA 117

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-------SKIG--LESTIVNVQCEK 187
           + SAN++GQ +  N K  L+  + +++ L++D G          +G    STI++     
Sbjct: 118 VSSANKTGQPAAANAKEALT-QLGEDVTLVVDDGPRPAPQEDGSVGESKPSTILDCTS-T 175

Query: 188 KVRILRPGGLEIETLKRAI 206
              ++R G + ++ L+  +
Sbjct: 176 PYVVVREGAITVKELREVV 194


>gi|253570302|ref|ZP_04847711.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384884|ref|ZP_06994443.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14]
 gi|251840683|gb|EES68765.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262028|gb|EFI04893.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 1_1_14]
          Length = 187

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+ R+YEIKKR     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVHRVYEIKKRADSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++ P   A   +   RV    F+++L
Sbjct: 63  VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEEFSRRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  +   +  I+      +     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANISGQPGAANFTE-ISEEVKSAVDYIVGFRQDDMSRPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|238786121|ref|ZP_04630076.1| hypothetical protein yberc0001_36560 [Yersinia bercovieri ATCC
           43970]
 gi|238712973|gb|EEQ05030.1| hypothetical protein yberc0001_36560 [Yersinia bercovieri ATCC
           43970]
          Length = 178

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 4/173 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           +  PT++ Y L     + TA+ R+  I++    +       D+S +  +A VD  +  L 
Sbjct: 2   VVYPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVDNSAFRLI 61

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRS 143
           K   PG  T +L          L     KT   RVP       L++  G PL   +    
Sbjct: 62  KNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALALLDVLGEPLMSTTLMLP 120

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           G     +    +   + K++ LII GG S     +T++++  +  V ++R G 
Sbjct: 121 GNDFAESDPEEIKEHLGKQVDLIIHGG-SLGQQPTTVIDLT-DSSVAVIREGA 171


>gi|29349351|ref|NP_812854.1| putative translation factor [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341259|gb|AAO79048.1| conserved hypothetical protein, putative translation factor
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 187

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+ R+YEIKKR     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVHRVYEIKKRADSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++ P   A   +   RV    F+++L
Sbjct: 63  VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEEFSRRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  +   +  I+      +     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANISGQPGAANFTE-ISEEVKSAVDYIVSFRQDDMSRPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|163750229|ref|ZP_02157471.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99]
 gi|161330085|gb|EDQ01069.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella benthica KT99]
          Length = 206

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L  G  I  PT++ Y L     N  A+ R+  I++    +       D S
Sbjct: 14  PRLINQAVNALKNGGVIVYPTDSGYALGCMLGNKDAMSRMARIRQIDNDHNFSLMCRDQS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD  +  + K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELSTYAKVDNQAYRVLKHHTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S    G+    +    +   +  ++  II GG       +T++++  + 
Sbjct: 133 LEALDAPLMSTSLILPGEEFTESDPEHIRDILEHQVDAIIHGGYLGE-KPTTVIDM-SDG 190

Query: 188 KVRILRPGGLEI 199
            + ++R G  +I
Sbjct: 191 DMVVIREGAGDI 202


>gi|262369302|ref|ZP_06062630.1| yrdC domain-containing protein [Acinetobacter johnsonii SH046]
 gi|262315370|gb|EEY96409.1| yrdC domain-containing protein [Acinetobacter johnsonii SH046]
          Length = 205

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E + AG  +  PT+  Y +     N  A+ R+ +I+   A +      +D+S
Sbjct: 13  ARSISQAVERIRAGDVVVYPTDAAYAIGCQIGNKNAMERIAQIRGLGAKHQYAIICADLS 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 73  DIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVP-KRLMHPKKKTIGLRIPSNPVCQML 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +     Q    +  + +   + K I + ID G+  +   S IV++  + 
Sbjct: 132 LKELGEPLLTSTLILPNQEEPLDDPYDIEMQLSKRIDVFIDSGLGTLSTTS-IVDLSGDH 190

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  ++   +
Sbjct: 191 P-EVIRRGLGDVSAFE 205


>gi|70733538|ref|YP_257177.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5]
 gi|123658961|sp|Q4KKQ6|RIMN_PSEF5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|68347837|gb|AAY95443.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas fluorescens Pf-5]
          Length = 185

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 6/188 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    
Sbjct: 1   MVSSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKSRSVDKGLILIAD 60

Query: 66  DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           +I          P +        WPGP T ++       +    T    T   RV     
Sbjct: 61  NIHQFDFLFEDFPDTWIDRMSSTWPGPNTWLVPHQ--NLLPEWVTGVHDTVALRVSDHPL 118

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L    G PL   SAN  G+ +    +  +      ++ L++ G +      S I ++
Sbjct: 119 VRELCSLVG-PLISTSANPQGRPAART-RLRIEQYFRGQLDLVLSGSLGGRKNPSLIRDL 176

Query: 184 QCEKKVRI 191
              K VR 
Sbjct: 177 ATGKVVRP 184


>gi|153807334|ref|ZP_01960002.1| hypothetical protein BACCAC_01612 [Bacteroides caccae ATCC 43185]
 gi|149129696|gb|EDM20908.1| hypothetical protein BACCAC_01612 [Bacteroides caccae ATCC 43185]
          Length = 187

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSSVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++ P   A   +   RV    F+K+L
Sbjct: 63  VDFYVQDVPDVAWDLIEVA-DKPLTIIYS--GARNLAPNLLAEDGSVGIRVTNEAFSKRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I+      +     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGYRQDDMSRPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|313496442|gb|ADR57808.1| RimN [Pseudomonas putida BIRD-1]
          Length = 185

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    +I    
Sbjct: 7   VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVADNIRQFD 66

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 P          WPGP T ++       +    T    T   RV      + +  
Sbjct: 67  FLFEDFPEDWIDRMGSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPVVRELCA 124

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   S N  G+ +      +       ++ L++ G +      S I ++   + VR
Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFHGQLDLVLGGALGGRKNPSVIRDLATGEVVR 183

Query: 191 I 191
            
Sbjct: 184 P 184


>gi|314927904|gb|EFS91735.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL044PA1]
 gi|328907362|gb|EGG27128.1| Sua5/YciO/YrdC domain-containing protein [Propionibacterium sp.
           P08]
          Length = 213

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 5/189 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            +L +  + L  G  IA PT+T Y       N  A+ R+ ++++    +     +S  + 
Sbjct: 22  RSLNQVVDILHGGGLIAYPTDTGYAFGARLGNKDALDRIRKLRQLSDKHHFTLVMSRFAQ 81

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKKL 127
           V ++  +D       +   PG  T +L   +T D+  +      KT   RVP       L
Sbjct: 82  VGQYVQMDNWVFRAVRAAVPGRYTFIL--KATRDVPKVMLHPRKKTVGIRVPEHVTALAL 139

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   +    GQ +       +   I  ++  ++D G   +   +T+V+    K
Sbjct: 140 LEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSGK 198

Query: 188 KVRILRPGG 196
            V   R  G
Sbjct: 199 PVITRRGAG 207


>gi|226953462|ref|ZP_03823926.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244]
 gi|226835804|gb|EEH68187.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244]
          Length = 205

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 8/208 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + I   N     + +A + + AG  +  PT+  Y +     N +A+ R+ +I+    
Sbjct: 1   MLHLHIHPENPQARLITQAVDRIRAGDVVVYPTDAAYAIGCQIGNKSAMERIAQIRGLGP 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +       D+S +  +A VD     L K   P   T +L   S      L     KT  
Sbjct: 61  KHQYAIMCCDLSDIATYAKVDNAMYRLLKNNTPAVTTFILPATSEVP-KRLMHPKKKTIG 119

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P     + L++  G PL   +     Q    +  + + + + K I + ID G   + 
Sbjct: 120 LRIPSNPVAQALLKELGEPLLTSTLILPDQKDPLDDPYDIENQLGKRIDVFIDSGFGTLS 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLK 203
             S IV++  E    I+R G  ++   +
Sbjct: 180 TTS-IVDLSGENP-EIIRRGVGDVSAFE 205


>gi|300815507|ref|ZP_07095732.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1]
 gi|300532399|gb|EFK53461.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli MS 107-1]
 gi|323164847|gb|EFZ50638.1| ribosome maturation factor [Shigella sonnei 53G]
 gi|323173920|gb|EFZ59548.1| ribosome maturation factor [Escherichia coli LT-68]
          Length = 172

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 7/161 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8   DAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTK 125
           +K +     L+    +     WPGP+T V    +TT      T    +   RV       
Sbjct: 68  LKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVV 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
            L + YG PL   SAN SG      V  +  +      P++
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFPVV 165


>gi|326773289|ref|ZP_08232572.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505]
 gi|326636519|gb|EGE37422.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces viscosus C505]
          Length = 205

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 81/192 (42%), Gaps = 4/192 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  + L  G  +A PT++ Y LA    N   + R+  I++    +      +D + V 
Sbjct: 17  VEKVVDTLRDGGLVAYPTDSGYALACAPGNKEGLDRIRTIRQLDGKHNFTFVCADFAQVG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             A V   +  L K   PGP T +L          L+     T   R+P    T+ L+  
Sbjct: 77  PLAIVGNNAFRLIKRLTPGPWTFILKGTKDVPRMTLNPKKH-TLGVRIPDHAITQSLVAE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G P+   +  R GQ         +  S+   I ++++G + + G  ++++++  +    
Sbjct: 136 FGAPILSSTFIRPGQEEPETNGWEIQDSLGHLIDVVVEGPVGQ-GEPTSVIDLTDDVP-E 193

Query: 191 ILRPGGLEIETL 202
           +LR G  ++  L
Sbjct: 194 VLREGAGDVSLL 205


>gi|113969806|ref|YP_733599.1| translation factor SUA5 [Shewanella sp. MR-4]
 gi|114047035|ref|YP_737585.1| translation factor SUA5 [Shewanella sp. MR-7]
 gi|113884490|gb|ABI38542.1| translation factor SUA5 [Shewanella sp. MR-4]
 gi|113888477|gb|ABI42528.1| translation factor SUA5 [Shewanella sp. MR-7]
          Length = 206

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 4/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L +G  I  PT++ Y L        A+ R+  I++    +       D+S + 
Sbjct: 17  ISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
            +A VD  +  + K   PGP T +           L     KT   RVP       L+E 
Sbjct: 77  TYAKVDNQAYRILKSCTPGPYTFIFKASKEVP-RRLQNDKKKTIGIRVPDNVIALALLEA 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   S          +    +   +  ++ +I+ GG       +T++++  +    
Sbjct: 136 LDAPLMSTSLVMPNSDFAESDPEHIRDLLEHQVDVILHGGYLGE-KPTTVIDMSEDG-FE 193

Query: 191 ILRPGGLEI 199
           +LR G  ++
Sbjct: 194 VLREGAGDV 202


>gi|327405855|ref|YP_004346693.1| Sua5/YciO/YrdC/YwlC family protein [Fluviicola taffensis DSM 16823]
 gi|327321363|gb|AEA45855.1| Sua5/YciO/YrdC/YwlC family protein [Fluviicola taffensis DSM 16823]
          Length = 185

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 5/183 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +   E L  G  I  PT+T++G+  D+ N  A +R+ EIK+RP     I  V    M++K
Sbjct: 5   QTIIEALKNGKTILYPTDTIWGIGCDATNEQACQRILEIKQRPKDKSFILLVDSFQMIEK 64

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
           +    P   +        PLT++        + P   A   +   R+        LI + 
Sbjct: 65  YIPEFPAVCYDLADLADKPLTIIYPN--AQGLAPSVLAEDGSVGIRITKDPICLALIRSI 122

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SKIGLESTIVNVQCEKKVR 190
             PL   SAN SG+   TN    ++S+I +++  I++     ++   S I+ +  +  ++
Sbjct: 123 RLPLVSTSANISGKPFPTNFSD-INSAIKQQVEAILELKTNEQLSTPSQIIKIGLDSSIQ 181

Query: 191 ILR 193
           ++R
Sbjct: 182 VIR 184


>gi|254515967|ref|ZP_05128027.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR5-3]
 gi|219675689|gb|EED32055.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR5-3]
          Length = 187

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 5/181 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK- 71
           R     L  G  IA PTE V+GL+ D  + +A++RL ++K+RPA   LI    D S ++ 
Sbjct: 10  RLCANVLAGGGVIACPTEAVWGLSCDPFSGSAVQRLLDLKQRPAHKGLILVAGDESQLEF 69

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
             A + P      ++ WPGP T ++       +  L     ++   RV      ++L   
Sbjct: 70  LLADLAPALRQKLRVSWPGPNTWLVPHHG--RVPALVHGKFESVAVRVSGHPGVRELCRV 127

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           YG PL   SAN +GQ +   +  +  +     +  ++ G ++  G  STI +V  ++  R
Sbjct: 128 YGGPLVSSSANVAGQPAPKTLLAV-RNYFGTRLDGLLPGQVAAAGRPSTIRDVFTDEVFR 186

Query: 191 I 191
            
Sbjct: 187 A 187


>gi|255004138|ref|ZP_05278939.1| hypothetical protein AmarV_01920 [Anaplasma marginale str.
           Virginia]
          Length = 214

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +  PT+T+Y LA  + +  +++RLYEIK+R    P+   ++ ++ ++
Sbjct: 1   MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           K AS+      + +   PGP+T V+ L  T  +         T   R+P     + ++E 
Sbjct: 61  KFASLKDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFF--RGTVGVRIPNHAMARTILEE 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G P+A  SAN SG          +   I   +  +++   +  G+ ST+ +VQ  K +R
Sbjct: 119 FGGPVAATSANLSGMPGARRAME-IPQEIRDCVSELMEDDSAVGGMCSTVFDVQSRKVLR 177

Query: 191 I 191
           I
Sbjct: 178 I 178


>gi|313207112|ref|YP_004046289.1| translation factor sua5 [Riemerella anatipestifer DSM 15868]
 gi|312446428|gb|ADQ82783.1| translation factor SUA5 [Riemerella anatipestifer DSM 15868]
 gi|315022490|gb|EFT35517.1| Sua5 YciO YrdC YwlC family protein [Riemerella anatipestifer RA-YM]
 gi|325335450|gb|ADZ11724.1| Sua5B [Riemerella anatipestifer RA-GD]
          Length = 182

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 7/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L +G  +  PT+T++GL  D+ NP AI+++Y+IKKR     LI  V     ++
Sbjct: 1   MQEIVEVLKSGGTVLYPTDTIWGLGCDATNPEAIQKIYKIKKREPHKSLIILVDTEKRLQ 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130
               V  ++  +       P+T++ D  +   +     A   +   R V   F +KLI  
Sbjct: 61  DLVEVPEMAWEIID-LSEKPVTIIYD--APKGLPKELLAEDGSIGIRLVKDAFCQKLIGK 117

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQCEKK 188
              PL   SAN SG  S       +S  +   +  +++    K+     S+++ +  + +
Sbjct: 118 LNAPLVSTSANFSGDKSPKQFSD-ISPKLIDAVDFVVEEQKDKVSQWAGSSVIRIWKDNR 176

Query: 189 VRILRP 194
           +++LR 
Sbjct: 177 IKVLRE 182


>gi|57032998|gb|AAH88928.1| LOC496333 protein [Xenopus laevis]
          Length = 204

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 12/185 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I +PT+T+YG+A  ++N  +I  +Y +K R    PL   V ++  + ++  V+ 
Sbjct: 6   LQQGGVIGVPTDTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCQVN- 64

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
           +   L +   PGP+TLV++   +  ++            R+P   F ++L E    PLA+
Sbjct: 65  VPDQLLRDLLPGPVTLVMER--SGRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLAL 122

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRI 191
            SAN S Q S   V+      +  ++ L++DGG        +  L ST+V++    K  +
Sbjct: 123 TSANISSQESTLTVEE--FRDLWPKLSLVVDGGPIGEVSSPECRLGSTVVDLSVPGKFIV 180

Query: 192 LRPGG 196
           +R G 
Sbjct: 181 IRDGC 185


>gi|282878540|ref|ZP_06287321.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccalis ATCC 35310]
 gi|281299331|gb|EFA91719.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccalis ATCC 35310]
          Length = 189

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T    ++ A E +  G  I  PT+TV+G+  D+ N  A+ ++Y+IKKR     LIC V 
Sbjct: 1   MTIQEDIKNAIEVMKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVD 60

Query: 66  DISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
             + ++++   V  ++  L  +    P T++LD     ++ P   A   +   R+    F
Sbjct: 61  SDARLQRYVRQVPNVAWDLLDVA-VKPTTIILD--GAINLAPNLIAEDGSIALRITKEPF 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIV 181
           + +L   +   L   SAN SG+ +  N    +S  I   +  +      +      S+I+
Sbjct: 118 SHELCYRFQKALVSTSANVSGEPAAANYCD-ISQEILDAVDYVCHSRRQEHKPHTPSSII 176

Query: 182 NVQCEKKVRILR 193
            +  + +V I+R
Sbjct: 177 KLAEDGEVTIIR 188


>gi|332977635|gb|EGK14403.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. 1501(2011)]
          Length = 207

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 8/207 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ + I   N     + +  + L+    I  PT+T Y       +  AI +L  I++   
Sbjct: 1   MQTLYIHPENPQPRLISQVVDALNRDQLIIYPTDTSYAFGCKIGSKEAIEKLRLIRQLDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +       D+S +  +A+VD     L K   P P+T +LD         LS    KT  
Sbjct: 61  RHQFTLLCRDLSEIATYATVDNQQFKLLKASTPSPITFILDATKDVP-KKLSHPKKKTIG 119

Query: 117 FRVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + +++  G P+   S          +    +   +   I ++I+ G+    
Sbjct: 120 IRVPSNPISQMILDAMGEPILTSSLILPDMQLALDDPFDIEDKLGNNIDVMINAGVLTTK 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202
           L +TI+++       ++R G  +   L
Sbjct: 180 L-TTIIDMTVS-PPELIRQGAGDASLL 204


>gi|282899761|ref|ZP_06307724.1| Sua5/YciO/YrdC/YwlC [Cylindrospermopsis raciborskii CS-505]
 gi|281195376|gb|EFA70310.1| Sua5/YciO/YrdC/YwlC [Cylindrospermopsis raciborskii CS-505]
          Length = 217

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 18/219 (8%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I   N     +      L  G  +  PT+TVY +  D    +A+ R+ +IK+    
Sbjct: 3   RILEIHPDNPQNRRIEDIRLALSGGAVMLYPTDTVYAIGCDLNAKSAVERVKKIKRLAND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTAC 116
            PL      +S V  +A V  ++  + K   PGP T +L   +T  +  L      KT  
Sbjct: 63  KPLTFLCPSLSRVATYAFVSDIAYRIMKSLIPGPYTFLLP--ATKLVPRLVQNPKRKTTG 120

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQIS--------ITNVKHILSSSICKEIPLII 167
            RVP       L+E+ G+P+   SA+              I   K  L   +   + +II
Sbjct: 121 IRVPNHHLCLALLESLGNPIISTSAHLPLHDMDDLNVDIDIHPSKMDLFDRLDSLVDIII 180

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           D G       STI+++   + +   +  G+  E +   I
Sbjct: 181 DTGEEPKNQVSTILDLTDNQPIITRK--GMGWEAVAAWI 217


>gi|218195427|gb|EEC77854.1| hypothetical protein OsI_17110 [Oryza sativa Indica Group]
          Length = 408

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A+PT++ Y L     +  A+ RL  I++    + L     D+S V  +A VD   
Sbjct: 223 RGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQ 282

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPLAIPS 139
             L K   PGP T +LD         +S    KT   RVP     +L+    G PL   +
Sbjct: 283 YRLVKQATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 341

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ---CEKKVRILRPGG 196
               G+    N    + +    +I  ++D G   +   +T+V++         R++R G 
Sbjct: 342 LIPPGETEPMNDPSEIRARFEHQIDAVVDAGACPL-EPTTVVDLTDMATGGDPRVVREGR 400

Query: 197 LEIETL 202
             +  L
Sbjct: 401 GPLSAL 406


>gi|56416667|ref|YP_153741.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries]
 gi|56387899|gb|AAV86486.1| hypothetical protein AM436 [Anaplasma marginale str. St. Maries]
          Length = 197

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +  PT+T+Y LA  + +  +++RLYEIK+R    P+   ++ ++ ++
Sbjct: 1   MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           K AS+      + +   PGP+T V+ L  T  +         T   R+P     + ++E 
Sbjct: 61  KFASLKDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFF--RGTVGVRIPNHAMARTILEE 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G P+A  SAN SG          +   I   +  +++   +  G+ ST+ +VQ  K +R
Sbjct: 119 FGGPVAATSANLSGMPGARRAME-IPQEIRDCVSELMEDDSAVGGMCSTVFDVQSRKVLR 177

Query: 191 I 191
           I
Sbjct: 178 I 178


>gi|255690473|ref|ZP_05414148.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM
           17565]
 gi|260623922|gb|EEX46793.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides finegoldii DSM
           17565]
          Length = 187

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ ++ G  I  PT+TV+G+  D+ N  A+RR+YEIKKR     ++  V     
Sbjct: 3   EDIKKACQVMNEGGVILYPTDTVWGIGCDATNEEAVRRVYEIKKRADSKAMLVLVDSPVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L ++    PLT++       ++     A   +   RV    F+++L
Sbjct: 63  VDFYVQDVPAVAWDLIEVA-DKPLTIIYS--GARNLATNLLAEDGSVGIRVTNEEFSQRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I+      +     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFSE-ISDEIKSAVDYIVGFRQEDLSRPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|256820498|ref|YP_003141777.1| SUA5/yciO/yrdC domain-containing protein [Capnocytophaga ochracea
           DSM 7271]
 gi|256582081|gb|ACU93216.1| SUA5/yciO/yrdC domain protein [Capnocytophaga ochracea DSM 7271]
          Length = 185

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 84/180 (46%), Gaps = 6/180 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  I  PT+TV+GL  D+ NP A+ ++++IK+R     LI  VSD  M++ + + 
Sbjct: 9   EILKAGKVILYPTDTVWGLGCDATNPEAVAKIFQIKQRSESKSLIILVSDTEMLQHYVTD 68

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
            P  +         P T++        +     A   T   RV    F +++I  +G P+
Sbjct: 69  IPPKVLTYLQTLQEPTTIIYSHP--LHLAKNVIAADNTVAIRVVQDVFCQQMIADFGKPI 126

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNVQCEKKVRILR 193
              SAN SG+ +      +++  I  +   ++      ++I   S ++    + +++ILR
Sbjct: 127 VSTSANISGEPTPL-YYQLINPQIIAQCDYVVPYRQDDTQIKNPSRLIRFDTDGEIQILR 185


>gi|218128562|ref|ZP_03457366.1| hypothetical protein BACEGG_00132 [Bacteroides eggerthii DSM 20697]
 gi|317475623|ref|ZP_07934884.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217989286|gb|EEC55600.1| hypothetical protein BACEGG_00132 [Bacteroides eggerthii DSM 20697]
 gi|316908193|gb|EFV29886.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 187

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMREGGVILYPTDTIWGIGCDATNEDAVRRVYEIKQRQDSKAMLVLVDSSVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L       PLT++       ++     A   +   RV    F+K+L
Sbjct: 63  VDFYVQDVPEVAWDLID-LADKPLTIIYS--GARNLAANLLAEDGSVGIRVTNEDFSKRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ S  N    +S  +   +  I+     ++     S+I+ +  
Sbjct: 120 CQQFRKAVVSTSANISGQPSPRNFSE-ISEEVKSAVDYIVGYRQEEMSNPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|197287104|ref|YP_002152976.1| ribosome maturation factor [Proteus mirabilis HI4320]
 gi|194684591|emb|CAR46453.1| putative RNA-binding protein [Proteus mirabilis HI4320]
          Length = 189

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 8/180 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
             E L     IA PTE V+G+  D  + +A+  L E+K+R     LI    +   +K + 
Sbjct: 12  IIEALQNNQVIAYPTEAVFGVGCDPDSESAVMALLELKQRAIEKGLILIADNYEQLKPYI 71

Query: 75  SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             + L+          WPGP+T V+   STT      T    +   RV      K L   
Sbjct: 72  DDNALTQEQRERMFASWPGPITWVIPAKSTT--PKWLTGRFSSLAVRVTDHPIVKALCVA 129

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           YG PL   SAN SG     +V+ +        I  I++G +      S I +    +  R
Sbjct: 130 YGKPLVSTSANLSGLPPCRSVEEV-QEQFRNRI-AIVNGEVGGRKNPSEIRDALTGELYR 187


>gi|320540532|ref|ZP_08040182.1| conserved protein [Serratia symbiotica str. Tucson]
 gi|320029463|gb|EFW11492.1| conserved protein [Serratia symbiotica str. Tucson]
          Length = 207

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 3/177 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L  G  I  PT++ Y L     + TA+ R+  I++  + +       D+S
Sbjct: 14  PRLINQTMDVLRKGGVIVYPTDSGYALGCMLEDKTAMARICHIRQLGSNHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD ++ HL K   PG  T +L          L     KT   RVP       L
Sbjct: 74  ELSSYAYVDNIAYHLIKNNTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +     P+   +    G     +    +S  + K++ L+I GG       +T+V++ 
Sbjct: 133 LAALNEPMMSTTLMLPGNDFAESDPQEISDHLGKQVDLVIHGGFLGQ-QPTTVVDLT 188


>gi|160872342|ref|ZP_02062474.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsiella grylli]
 gi|159121141|gb|EDP46479.1| Sua5/YciO/YrdC/YwlC family protein [Rickettsiella grylli]
          Length = 208

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 10/208 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q + I   N     +R A   +     I  PT++ Y L     N   I+R+ +I++    
Sbjct: 3   QFLKIHKENPQLHLIRMAANIVMKEGVIVYPTDSAYALGCQLTNKKGIQRIKQIRQLKDQ 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           + L     DIS +   A ++     L K   PGP T +L   S      L  A  KT   
Sbjct: 63  HSLTLLCRDISEMAHFAQLETPIFRLIKANTPGPYTFLLPATSHVP-RYLIHAKRKTIGI 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       L+E    PL   +               +   + K + L+IDGG    GL
Sbjct: 122 RIPDNKIVHALLEMNDQPLINTTLILPDSDLPLLEPEAIRDILGKRVDLVIDGGFC--GL 179

Query: 177 E-STIVNVQCEKKVRILRPGGLEIETLK 203
           E +T++++       I+R G  EI+  +
Sbjct: 180 ELTTVIDLSGHIP-HIIRCGKGEIKPFQ 206


>gi|289810569|ref|ZP_06541198.1| hypothetical protein Salmonellaentericaenterica_41842 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 174

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 4/169 (2%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PT++ Y L     +  A+ R+  I+  P  +       D+S +  ++ VD ++  L K  
Sbjct: 1   PTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSYVDNVAFRLMKNN 60

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQI 146
            PG  T +L          L     KT   RVP       L++T G P+   S    G  
Sbjct: 61  TPGNYTFILKGTKEVP-RRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGSD 119

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
              +    +   + K++ LII GG       +T++++  +  V +LR G
Sbjct: 120 FTESDPEEIKDRLEKQVDLIIHGGYLGQ-QPTTVIDLTNDSPV-VLREG 166


>gi|157374827|ref|YP_001473427.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3]
 gi|157317201|gb|ABV36299.1| SUA5/YciO/YrdC/YwlC family protein [Shewanella sediminis HAW-EB3]
          Length = 206

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 74/192 (38%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   +  G  I  PT++ Y L        A+ R+  I++    +       D S
Sbjct: 14  ARLINQAVNAIKNGGVIVYPTDSGYALGCLLGEKDAMARIARIRQIDNDHNFSLMCRDQS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD  +  + K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELATYARVDNQAYRVLKHNTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S    G+    +    +   +  ++ +II GG       +T++++  E 
Sbjct: 133 LEALDAPLMSTSLILPGEEFTESDPEHIRDILEHQVDVIIHGGYLGE-KPTTVIDM-SEG 190

Query: 188 KVRILRPGGLEI 199
            + +LR G  ++
Sbjct: 191 DIEVLREGAGDV 202


>gi|260220460|emb|CBA28020.1| Uncharacterized protein HI1198 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 207

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   L+ G  +A+PT++ Y L     +  A  +L  I+     + L     D+S
Sbjct: 14  PRLLKQAIALLEKGGILAVPTDSSYALVCHLDDKAAADKLRSIRGVDDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +L+         +S  + KT   RVP     ++L
Sbjct: 74  ELANYARVDNRQYRLLKAATPGAYTFILEASKEVP-RRVSHPSRKTIGLRVPEHQVLQEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  YG  L   +    G+    N    +      +I  +ID G   +   +T++++  E+
Sbjct: 133 LAHYGSALLATTLIAKGESEPLNDAQDIRERYEHQIAAVIDAGACAL-EPTTVIDLTGEE 191

Query: 188 KVRILRPGG 196
              ++R GG
Sbjct: 192 P-ELIRQGG 199


>gi|119943865|ref|YP_941545.1| ribosome maturation factor [Psychromonas ingrahamii 37]
 gi|212288218|sp|A1SR31|RIMN_PSYIN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|119862469|gb|ABM01946.1| translation factor SUA5 [Psychromonas ingrahamii 37]
          Length = 191

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 86/187 (45%), Gaps = 7/187 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + L  A + L +   IA PTE+V+GL  D     AI+++  +K+RPA   LI   + I 
Sbjct: 7   QSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIE 66

Query: 69  MVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
            ++K+A         L + K  WPGP+T ++      ++  L + + ++   RV      
Sbjct: 67  QLEKYADFSLLTAAQLTVIKKTWPGPITWIVPSQK--NLSKLISGDFESVAVRVTAHPIV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK-EIPLIIDGGISKIGLESTIVNV 183
           +++   +  P+   SAN S   +  + + +         + L+ID  +S +   + I + 
Sbjct: 125 RQICLAFDKPIISTSANLSSLEAALSSQQVNKMFKSNTLLNLVIDAPVSGLSTPTQIFHA 184

Query: 184 QCEKKVR 190
              K++R
Sbjct: 185 STGKRLR 191


>gi|300112979|ref|YP_003759554.1| SUA5/yciO/yrdC domain-containing protein [Nitrosococcus watsonii
           C-113]
 gi|299538916|gb|ADJ27233.1| SUA5/yciO/yrdC domain protein [Nitrosococcus watsonii C-113]
          Length = 185

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 5/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   +  G  IA PTE V+GL  D R   AI R+ ++K R      I   +D + ++
Sbjct: 8   VRFAARIIHRGGVIAYPTEGVFGLGCDPRQKAAIERILQLKGRSVHKGFILIAADFTQLQ 67

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
            +   +   +    +  WPGP+T +L   +  D+ P       T   RV        L +
Sbjct: 68  PYLLPLTASTRSRLEETWPGPVTWLLP--ARGDVPPWLRGRHDTLAVRVTAYPLAACLCQ 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           T GH L   SANR+G+        +   S    +  I+ G        S I +    +++
Sbjct: 126 TAGHALVSTSANRAGRPPAQTTLQV-RRSFGASLDYILPGITGGRTGPSEIRDGSTGRRL 184

Query: 190 R 190
           R
Sbjct: 185 R 185


>gi|126662056|ref|ZP_01733055.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium BAL38]
 gi|126625435|gb|EAZ96124.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium BAL38]
          Length = 188

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 10/195 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I     +  +  A E +  G  I  PT+TV+G+  D+ N  AI+++Y +K+R     +
Sbjct: 1   MEI-----NTEVHNAFEIIKNGGIILYPTDTVWGIGCDATNEDAIKKIYALKQREESKSM 55

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV- 119
           I  ++   M+       P            P TL+LD     ++     A   T   R+ 
Sbjct: 56  IVLLNGERMMYNVFKDIPEVAWQILDLSERPTTLILD--KPRNVAKNIIAEDNTLAVRMV 113

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ES 178
              F  KL+E    PL   SAN SG  +    K I    I   +  +++    K+    S
Sbjct: 114 TEPFCFKLMERMKKPLVSTSANVSGMFTPKTFKEITPEIIKG-VDYVVNLHHDKVCKNPS 172

Query: 179 TIVNVQCEKKVRILR 193
           TI+ +  + +V+++R
Sbjct: 173 TIIKLGLDSQVKVIR 187


>gi|93005341|ref|YP_579778.1| Sua5/YciO/YrdC/YwlC [Psychrobacter cryohalolentis K5]
 gi|92393019|gb|ABE74294.1| translation factor SUA5 [Psychrobacter cryohalolentis K5]
          Length = 205

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 8/207 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ+  I   N     + +  + L     I  PT+T Y          A+ +L +I+    
Sbjct: 1   MQVFYIHPENPQPRLIEQVADLLRKDQLIIYPTDTSYAFGCRLGAKDALEKLKQIRALDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +       D+S +  +A+VD +     K   P P+T +L+         L+ A  KT  
Sbjct: 61  KHQFTLLCRDLSEIANYAAVDNVQFKQLKSHTPAPITFILNATKDVP-KKLAHAKKKTIG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + L+E    P+   S     +  I +    +   +  +I  +I+ GI    
Sbjct: 120 IRVPSNAIAQALLEAMDEPILTSSLILPNRDDILDDPFEIEELLGNQIDGLINAGIKTTK 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202
           L +TIV++   +   I+R G  ++ +L
Sbjct: 180 L-TTIVDMTSSQP-EIIRQGAADVSSL 204


>gi|53715189|ref|YP_101181.1| putative translation factor [Bacteroides fragilis YCH46]
 gi|60683124|ref|YP_213268.1| hypothetical protein BF3675 [Bacteroides fragilis NCTC 9343]
 gi|265767017|ref|ZP_06094846.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52218054|dbj|BAD50647.1| putative translation factor [Bacteroides fragilis YCH46]
 gi|60494558|emb|CAH09357.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|263253394|gb|EEZ24870.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301164636|emb|CBW24195.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 187

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+TV+G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKRRADSKAMLVLVDSPVK 62

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V+ +    P ++  L ++    PLT++       ++     A   +   RV    F+++L
Sbjct: 63  VEFYVQDVPSVAWDLIEVA-DKPLTIIYS--GARNLASNLLAEDGSVGIRVTNEAFSRRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I++     +     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFNE-ISEEIKSSVDYIVNFRQDDMSRPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|329957244|ref|ZP_08297764.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056]
 gi|328522957|gb|EGF50060.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056]
          Length = 187

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+TV+G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMREGGVILYPTDTVWGIGCDATNEDAVRRVYEIKQRQDSKAMLVLVDSSVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L       PLT++       ++     A   +A  RV    F+K+L
Sbjct: 63  VDFYVRDVPEVAWDLID-LADKPLTIIYS--GARNLAANLLAEDGSAGIRVTNEEFSKRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ S  N    +S  +   +  I+     ++     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANISGQPSPKNFSE-ISEEVKSAVDYIVGYRQEEMSNPKPSSIIKLGK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|314966701|gb|EFT10800.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL082PA2]
 gi|315093382|gb|EFT65358.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL060PA1]
 gi|315103362|gb|EFT75338.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA2]
 gi|327327527|gb|EGE69303.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL103PA1]
          Length = 222

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L +  + L  G  IA PT+T Y       N  A+ R+ ++++    +     +S  +
Sbjct: 30  QRSLNQVVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLIMSQFA 89

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126
            V ++  +D           PG  T +L+  +T D+  +      KT   RVP       
Sbjct: 90  QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 147

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    P+   +    GQ +       +   I  ++  ++D G   +   +T+V+    
Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206

Query: 187 KKVRILRPGG 196
           + V   R  G
Sbjct: 207 EAVITRRGAG 216


>gi|229494439|ref|ZP_04388202.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121]
 gi|229318801|gb|EEN84659.1| Sua5/YciO/YrdC/YwlC family protein [Rhodococcus erythropolis SK121]
          Length = 206

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +  E L     IA PT++ Y L     N +   R+ EI+   + +      +D +
Sbjct: 14  PRAISQIVEMLRNDAVIAYPTDSCYALGARMDNHSGTDRIREIRHLRSDHHFTLVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +     V   +    K   PG  T +L          L+ A  KT   R+P     + L
Sbjct: 74  QLGHFVHVTNSAFRAVKAATPGQYTFILPATKEVP-RRLAHAKKKTVGVRIPSHPVVRAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   +    G          +   +  ++  +ID G       +T+V+     
Sbjct: 133 LQELGEPILSSTLLLPGAEEPMTDGWQIKEELDHQLDAVIDSGDCGT-EPTTVVDYSSGV 191

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  +    +
Sbjct: 192 P-EIVRVGAGDPSRFE 206


>gi|322368033|ref|ZP_08042602.1| Sua5/YciO/YrdC/YwlC family protein [Haladaptatus paucihalophilus
           DX253]
 gi|320552049|gb|EFW93694.1| Sua5/YciO/YrdC/YwlC family protein [Haladaptatus paucihalophilus
           DX253]
          Length = 204

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 8/201 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + L +A   +  G  +  PTETVYGL  D+ +PTAI R+++ K R    P+   V D+ 
Sbjct: 12  EDELERAATAMRDGHLVVYPTETVYGLGADALDPTAIERVFDAKGRARDKPISLAVPDVE 71

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
             + +       L   + F PGP+T++ +      +  + T        R+P       +
Sbjct: 72  TARNYVRPTERELAFMEAFLPGPVTVLCEKRDI--VPDVLTGGRSRVGVRIPDQPVALSL 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             +  P+   SAN SG+ S+T +   L   I      +IDGG +      T+VNV+  + 
Sbjct: 130 LRHVAPITSTSANVSGRGSVTCIDD-LDDEIRDAAECVIDGGETGGTGS-TVVNVKQGEI 187

Query: 189 VRILRPGGLEIETLKRAISVE 209
           +R     G   + ++  ++ E
Sbjct: 188 LR----RGENADEIEAWLAAE 204


>gi|294141571|ref|YP_003557549.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12]
 gi|293328040|dbj|BAJ02771.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella violacea DSS12]
          Length = 206

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   L  G  I  PT++ Y L        A+ R+  I++    +       D S
Sbjct: 14  PRLINQAVNALKNGGVIVYPTDSGYALGCLLGEKDAMSRMARIRQIDNDHNFSLMCRDQS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD  +  + K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELSAYAKVDNQAYRVLKHHTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S    G+    +    +   +  ++ +II GG       +T++++  + 
Sbjct: 133 LEALDAPLMSTSLILPGEEFTESDPEHIRDILEHQVDVIIHGGYLGE-KPTTVIDM-SDG 190

Query: 188 KVRILRPGGLEI 199
            + ++R G  +I
Sbjct: 191 DIEVIREGAGDI 202


>gi|313837067|gb|EFS74781.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA2]
 gi|314971840|gb|EFT15938.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA3]
          Length = 206

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 5/189 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            +L +  + L  G  IA PT+T Y       N  A+ R+ ++++    +     +S  + 
Sbjct: 15  RSLNQVVDILHGGGLIAYPTDTGYAFGARLGNKDALDRIRKLRQLSDKHHFTLVMSRFAQ 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKKL 127
           V ++  +D       +   PG  T +L   +T D+  +      KT   RVP       L
Sbjct: 75  VGQYVQMDNWVFRAVRAAVPGRYTFIL--KATRDVPKVMLHPRKKTVGIRVPEHVTALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   +    GQ +       +   I  ++  ++D G   +   +T+V+    K
Sbjct: 133 LEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSGK 191

Query: 188 KVRILRPGG 196
            V   R  G
Sbjct: 192 PVITRRGAG 200


>gi|222475032|ref|YP_002563447.1| hypothetical protein AMF_320 [Anaplasma marginale str. Florida]
 gi|255003012|ref|ZP_05277976.1| hypothetical protein AmarPR_01750 [Anaplasma marginale str. Puerto
           Rico]
 gi|269958915|ref|YP_003328704.1| putative translation factor [Anaplasma centrale str. Israel]
 gi|222419168|gb|ACM49191.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
 gi|269848746|gb|ACZ49390.1| putative translation factor [Anaplasma centrale str. Israel]
          Length = 197

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +  PT+T+Y LA  + +  +++RLYEIK+R    P+   ++ ++ ++
Sbjct: 1   MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           K AS+      + +   PGP+T V+ L  T  +         T   R+P     + ++E 
Sbjct: 61  KFASLKDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFF--RGTVGVRIPDHAMARTILEE 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G P+A  SAN SG          +   I   +  +++   +  G+ ST+ +VQ  K +R
Sbjct: 119 FGGPVAATSANLSGMPGARRAME-IPQEIRDCVSELMEDDSAVGGMCSTVFDVQSRKVLR 177

Query: 191 I 191
           I
Sbjct: 178 I 178


>gi|332829168|gb|EGK01832.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 187

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KA E L AG  I  PT+T++G+  D+ N  A+R++YE+KKR     LI  V +   
Sbjct: 3   EDIKKAFEVLVAGGLILYPTDTIWGIGCDATNEEAVRKVYELKKRVDSKALITLVDNPVK 62

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           +  +   V  ++  L ++    PLT++ D     ++ P   A   +   RV    F+++L
Sbjct: 63  LDFYIDGVPEIAWDLIEVS-DKPLTIIYDN--ARNVAPNLIAEDGSLAIRVTKESFSQEL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQC 185
            + +   L   SAN SG+ S  N    +S  I   +  I+    + I     S+I+ +  
Sbjct: 120 CKRFRKALVSTSANISGEPSPANFSE-ISDEIKNGVDYIVQYRQNDISKSKASSIIKLGK 178

Query: 186 EKKVRILRP 194
             +V+++R 
Sbjct: 179 SGEVKVIRE 187


>gi|21244532|ref|NP_644114.1| hypothetical protein XAC3808 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|81798965|sp|Q8PG13|RIMN_XANAC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|21110204|gb|AAM38650.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 187

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 7/190 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  L +A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S
Sbjct: 1   MTDTLDLDRAVAALTQGGVIAYPTEAVWGLGCDPRQRAAVMRLLEIKRRPVEKGVIVVAS 60

Query: 66  DISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + +++    +D   P         WPGP T +L +  T       T        R+   
Sbjct: 61  SVDVLRDWVDIDALEPARRRDVLTSWPGPHTWILPI--TDRAPRWVTGEHDGLAVRISAH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L   +G PL   SAN +G+    + +  L  ++   I  ++DG    +   + I 
Sbjct: 119 PVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177

Query: 182 NVQCEKKVRI 191
           + +  + +R 
Sbjct: 178 DARSGQILRD 187


>gi|227874645|ref|ZP_03992808.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35243]
 gi|227844854|gb|EEJ55000.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35243]
          Length = 224

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 22/226 (9%)

Query: 1   MQIMSITDSNA------LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+I  +   +       L      + +   + IPT+TVYG+A     P A+ RL   K R
Sbjct: 1   MEIFRVDPESGALSESELAACEAAVKSSELLVIPTDTVYGIASVPFEPAAVERLQGAKGR 60

Query: 55  PAMNPLICHVSDISMVKKH----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104
               P    VS ++ +             A +   +  LA  FWPGPLT++         
Sbjct: 61  GEDFPPPVLVSGVAALDSLLERPAIFGAPAPLYEAARRLATAFWPGPLTIIARANPRLGW 120

Query: 105 HPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
           +   T    T   R P       I     PLA+ SANR G    T++    ++    ++ 
Sbjct: 121 NLGKTGG--TIALRQPNHPVALQILEATGPLAVTSANRHGAPPATDISAA-TAYFWDKVA 177

Query: 165 LIIDGGISKIGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAIS 207
           + +D G S  G  STIVN+       +  I R G +    ++  + 
Sbjct: 178 VYVDAGESPSGQPSTIVNLTKLDAAGQPVIARAGAITAAEIRAVLG 223


>gi|332675495|gb|AEE72311.1| protein YciO [Propionibacterium acnes 266]
          Length = 213

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L +  + L  G  IA PT+T Y       N  A+ R+ ++++    +     +S  +
Sbjct: 21  QRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 80

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126
            V ++  +D           PG  T +L+  +T D+  +      KT   RVP       
Sbjct: 81  QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 138

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    P+   +    GQ +       +   I  ++  ++D G   +   +T+V+    
Sbjct: 139 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 197

Query: 187 KKVRILRPGG 196
           + V   R  G
Sbjct: 198 EAVVTRRGAG 207


>gi|117919970|ref|YP_869162.1| translation factor SUA5 [Shewanella sp. ANA-3]
 gi|117612302|gb|ABK47756.1| translation factor SUA5 [Shewanella sp. ANA-3]
          Length = 206

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 4/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   L +G  I  PT++ Y L        A+ R+  I++    +       D+S + 
Sbjct: 17  ISQAVAVLKSGGVIVYPTDSGYALGCMIGEKDAMTRITRIRQIEHDHNFSLMCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
            +A VD  +  + K   PGP T +           L     KT   RVP       L+E 
Sbjct: 77  TYAKVDNQAYRILKSCTPGPYTFIFKASKEVP-RRLQNDKKKTIGIRVPDNIIALALLEA 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   S          +    +   +  ++ +II GG       +T++++  +    
Sbjct: 136 LDAPLMSTSLVMPNSDFAESDPEHIRDLLEHQVDVIIHGGYLGE-KPTTVIDMSEDG-FE 193

Query: 191 ILRPGGLEI 199
           +LR G  ++
Sbjct: 194 VLREGAGDV 202


>gi|226304635|ref|YP_002764593.1| hypothetical protein RER_11460 [Rhodococcus erythropolis PR4]
 gi|226183750|dbj|BAH31854.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 206

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +  E L     IA PT++ Y L     N +   R+ EI+   + +      +D +
Sbjct: 14  PRAISQIVEMLRNDAVIAYPTDSCYALGARMDNHSGTDRIREIRHLRSDHHFTLVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +     V   +    K   PG  T +L          L+ A  KT   R+P     + L
Sbjct: 74  QLGHFVHVTNSAFRAVKAATPGQYTFILPATKEVP-RRLAHAKKKTVGVRIPSHPVVRAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G P+   +    G          +   +  ++  +ID G       +T+V+     
Sbjct: 133 LQELGEPILSSTLLLPGAEEPMTDGWQIKEELDHQLDAVIDSGDCGT-EPTTVVDYSSGA 191

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  +    +
Sbjct: 192 P-EIVRVGAGDPSRFE 206


>gi|50842570|ref|YP_055797.1| Sua5/YciO/YrdC domain-containing protein [Propionibacterium acnes
           KPA171202]
 gi|289425393|ref|ZP_06427170.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187]
 gi|289426572|ref|ZP_06428312.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165]
 gi|295130652|ref|YP_003581315.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137]
 gi|50840172|gb|AAT82839.1| protein with Sua5/YciO/YrdC domain [Propionibacterium acnes
           KPA171202]
 gi|289154371|gb|EFD03059.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK187]
 gi|289160216|gb|EFD08380.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J165]
 gi|291375456|gb|ADD99310.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes SK137]
 gi|313764393|gb|EFS35757.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL013PA1]
 gi|313772225|gb|EFS38191.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL074PA1]
 gi|313801969|gb|EFS43203.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA2]
 gi|313807580|gb|EFS46067.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA2]
 gi|313810089|gb|EFS47810.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL083PA1]
 gi|313812881|gb|EFS50595.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL025PA1]
 gi|313815930|gb|EFS53644.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL059PA1]
 gi|313818621|gb|EFS56335.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL046PA2]
 gi|313820390|gb|EFS58104.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA1]
 gi|313822806|gb|EFS60520.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA2]
 gi|313825263|gb|EFS62977.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL063PA1]
 gi|313827552|gb|EFS65266.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL063PA2]
 gi|313830420|gb|EFS68134.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL007PA1]
 gi|313833789|gb|EFS71503.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL056PA1]
 gi|313838794|gb|EFS76508.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL086PA1]
 gi|314915384|gb|EFS79215.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA4]
 gi|314918057|gb|EFS81888.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA1]
 gi|314920143|gb|EFS83974.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL050PA3]
 gi|314925277|gb|EFS89108.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL036PA3]
 gi|314931665|gb|EFS95496.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL067PA1]
 gi|314955721|gb|EFT00123.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL027PA1]
 gi|314958120|gb|EFT02223.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA1]
 gi|314959940|gb|EFT04042.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA2]
 gi|314962736|gb|EFT06836.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL082PA1]
 gi|314967896|gb|EFT11995.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL037PA1]
 gi|314973421|gb|EFT17517.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL053PA1]
 gi|314976100|gb|EFT20195.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL045PA1]
 gi|314978510|gb|EFT22604.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL072PA2]
 gi|314983880|gb|EFT27972.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA1]
 gi|314988060|gb|EFT32151.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA2]
 gi|314989869|gb|EFT33960.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL005PA3]
 gi|315080578|gb|EFT52554.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL078PA1]
 gi|315084248|gb|EFT56224.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL027PA2]
 gi|315085593|gb|EFT57569.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL002PA3]
 gi|315088355|gb|EFT60331.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL072PA1]
 gi|315095967|gb|EFT67943.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL038PA1]
 gi|315098597|gb|EFT70573.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL059PA2]
 gi|315101402|gb|EFT73378.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL046PA1]
 gi|315105586|gb|EFT77562.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL030PA1]
 gi|315108618|gb|EFT80594.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL030PA2]
 gi|327326248|gb|EGE68038.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL096PA2]
 gi|327331876|gb|EGE73613.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL096PA3]
 gi|327443078|gb|EGE89732.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL013PA2]
 gi|327445860|gb|EGE92514.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL043PA2]
 gi|327448158|gb|EGE94812.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL043PA1]
 gi|327450721|gb|EGE97375.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA3]
 gi|327453938|gb|EGF00593.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL083PA2]
 gi|328753409|gb|EGF67025.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL020PA1]
 gi|328754140|gb|EGF67756.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL087PA1]
 gi|328754612|gb|EGF68228.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL025PA2]
 gi|328760792|gb|EGF74358.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL099PA1]
          Length = 222

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L +  + L  G  IA PT+T Y       N  A+ R+ ++++    +     +S  +
Sbjct: 30  QRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 89

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126
            V ++  +D           PG  T +L+  +T D+  +      KT   RVP       
Sbjct: 90  QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 147

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    P+   +    GQ +       +   I  ++  ++D G   +   +T+V+    
Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206

Query: 187 KKVRILRPGG 196
           + V   R  G
Sbjct: 207 EAVVTRRGAG 216


>gi|33600639|ref|NP_888199.1| hypothetical protein BB1654 [Bordetella bronchiseptica RB50]
 gi|33568239|emb|CAE32151.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 208

 Score =  150 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A ++L  G  +A+PT++ Y +     +  A   L  ++     + L     D++
Sbjct: 14  PRLIKQAAQWLSDGGLVAVPTDSSYAVVAPLDDKAAADALRRLRGLDERHHLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + + A VD     L K   PGP T +L+         +S  + KT   RVP       L
Sbjct: 74  EIGQFARVDNKQYRLLKAATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPAHAVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +     +    N    +      E+  +ID G       +T+V++   +
Sbjct: 133 LEQVGAPLLSTTLIPRDEEDALNDPEAIQERYQHELAAVIDAGACPQ-TPTTVVDLTGAE 191

Query: 188 KVRILRPGG 196
              + R GG
Sbjct: 192 PAVLRRGGG 200


>gi|282895924|ref|ZP_06303964.1| Sua5/YciO/YrdC/YwlC [Raphidiopsis brookii D9]
 gi|281199169|gb|EFA74038.1| Sua5/YciO/YrdC/YwlC [Raphidiopsis brookii D9]
          Length = 219

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 20/221 (9%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I   N     +      L  G  +  PT+TVY +  D    +A+ R+ +IK+    
Sbjct: 3   RILEIHPDNPQNRRIEDIRLALSGGAVMLYPTDTVYAIGCDLNAKSAVERVKKIKRLAND 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTAC 116
            PL      +S V  +A V  ++  + K   PGP T +L   +T  +  L      KT  
Sbjct: 63  KPLTFLCPSLSRVATYAFVSDMAYRIMKSLIPGPYTFLLP--ATKLVPRLVQNPKRKTTG 120

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQIS----------ITNVKHILSSSICKEIPL 165
            RVP       L+E+ G+P+   SA+                +   K  L + +   + +
Sbjct: 121 IRVPNHHLCLALLESLGNPIISTSAHLPRHDMDDLNVDVDTDMLPSKMDLFNRLGSLVDI 180

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
           IID G       STI+++   + +   +  G+  E +   I
Sbjct: 181 IIDTGEEPKNQVSTILDLTDNQPIITRK--GMGWEAVAAWI 219


>gi|288941781|ref|YP_003444021.1| SUA5/yciO/yrdC domain-containing protein [Allochromatium vinosum
           DSM 180]
 gi|288897153|gb|ADC62989.1| SUA5/yciO/yrdC domain protein [Allochromatium vinosum DSM 180]
          Length = 204

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 5/182 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR A   L  G  +A PTE VYGL  D  N  A+ RL  IK+R     LI   +D   ++
Sbjct: 26  LRLAVRCLRQGGVLAYPTEAVYGLGCDPWNGRAVARLLAIKRRSMTKGLILIAADPDQLR 85

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
                ++P         WPGP T +L   +        T    T   RV       +L  
Sbjct: 86  PFVEPLEPERQREIHATWPGPNTWLLP--ARVATPAWLTGRFDTLAVRVSAHPLVAELCR 143

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            YG  +   SAN++ + +      +   ++ +    I+ G  +     S I + +  + +
Sbjct: 144 AYGGAIVSTSANQAARPAARTALGV-RLALDEPPDYILAGHCAGSDRPSVIRDGRTGRLI 202

Query: 190 RI 191
           R 
Sbjct: 203 RA 204


>gi|332017466|gb|EGI58189.1| YrdC domain-containing protein, mitochondrial [Acromyrmex
           echinatior]
          Length = 263

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 11/203 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            ++  A E L  G  IA+PT+TVYGLA  + +  AI+RLYEIK+R    PL   +S++  
Sbjct: 55  RSVAMAVELLQQGKVIAVPTDTVYGLACLAADSHAIQRLYEIKQRDERKPLAICLSNVKE 114

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           V     +D +   + K   PGP T+ L       ++      + T   RVP     + + 
Sbjct: 115 VGIWGIIDNIPAGMLKDLLPGPYTICLRRTPA--LNKNLNPGIDTVGIRVPNDKFIRSVA 172

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG------ISKIGLESTIVNV 183
               PLA+ SAN S ++S  +       ++  E+  +               + ST+V+V
Sbjct: 173 QIVGPLALTSANVSNELSSLHPNE--FRALWPELDGVFHSSTNSKKQTDARRIGSTVVDV 230

Query: 184 QCEKKVRILRPGGLEIETLKRAI 206
                  I+R G +    + R +
Sbjct: 231 SKLGCYSIMRRG-ISAHVIIRIL 252


>gi|269977554|ref|ZP_06184521.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1]
 gi|269934157|gb|EEZ90724.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1]
          Length = 224

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 89/226 (39%), Gaps = 22/226 (9%)

Query: 1   MQIMSITDSNA------LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+I  +   +       L      + +   + IPT+TVYG+A     P A++RL   K R
Sbjct: 1   MEIFRVDPESGALSESELAACEAAVKSSELLVIPTDTVYGIASVPFEPAAVQRLQGAKGR 60

Query: 55  PAMNPLICHVSDISMVKKH----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104
               P    VS ++ +             A +   +  LA  FWPGPLT++         
Sbjct: 61  GEDFPPPVLVSGVAALDSLLERPAIFGAPAPLYEAARRLATAFWPGPLTIIARANPRLGW 120

Query: 105 HPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
           +   T    T   R P       I     PLA+ SANR G    T++    ++    ++ 
Sbjct: 121 NLGKTGG--TIALRQPNHPVALQILEATGPLAVTSANRHGAPPATDISAA-TAYFWDKVA 177

Query: 165 LIIDGGISKIGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAIS 207
           + +D G S  G  STIVN+       +  I R G +    ++  + 
Sbjct: 178 VYVDAGESPSGQPSTIVNLTKLDAAGQPVIARAGAITAAEIRAVLG 223


>gi|311894848|dbj|BAJ27256.1| putative peptidase M22 family protein [Kitasatospora setae KM-6054]
          Length = 206

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +      +  G  IA PT++ + L     N   + R+  I+K    +       D +
Sbjct: 14  PRTVSTVVASIRDGALIAYPTDSCFALGCRLDNRDGLDRIRTIRKLDERHHFTLMCEDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 74  QLGRFVQLDNNVFRAIKAATPGSYTFILPATKEVP-RRLLHPKKKTVGVRIPDHAVTRAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   +  ++D G     + +T+V+   + 
Sbjct: 133 LAELGEPLVSSTLLLPGEEEPMTQGWEIKERLDHVLDAVVDSGDCGT-VPTTVVDF-SDG 190

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  + E  +
Sbjct: 191 TAEIVRYGAGDPERFE 206


>gi|220933377|ref|YP_002512276.1| putative translation factor, SUA5/YciO/YrdC-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994687|gb|ACL71289.1| putative translation factor, SUA5/YciO/YrdC-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 190

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 4/182 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +A   + AG  IA PTE V+GL  D RN  A+ RL  IK+R     LI   ++ + +
Sbjct: 12  DVHRAGALIRAGGVIAYPTEAVFGLGCDPRNEEAVARLLAIKQREVSKGLILIAAEAAQL 71

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           + +   +DP +   A   WPGP+T +  +    D     T +  T   RV        + 
Sbjct: 72  EPYLLPLDPQTTARAHAAWPGPVTWLWPVRP--DTPRWLTGDHDTLAVRVTDHPLAAALC 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
                +   SAN +G+        ++ + +   +  ++ G +      S I +V+    +
Sbjct: 130 REAGAIVSTSANLAGEEPARTDAAVV-AQLGHLLDGVLAGKVGGRDRPSEIRDVRSGAVI 188

Query: 190 RI 191
           R 
Sbjct: 189 RA 190


>gi|167765264|ref|ZP_02437377.1| hypothetical protein BACSTE_03652 [Bacteroides stercoris ATCC
           43183]
 gi|167696892|gb|EDS13471.1| hypothetical protein BACSTE_03652 [Bacteroides stercoris ATCC
           43183]
          Length = 187

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMREGGVILYPTDTIWGIGCDATNEDAVRRVYEIKQRQDSKAMLVLVDSSVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L       PLT++       ++     A   +   RV    F+K+L
Sbjct: 63  VDFYVRDVPEVAWDLID-LADKPLTIIYS--GARNLAANLLAEDGSVGIRVTNEDFSKRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ S  N    +S  +   +  I+     ++     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANISGQPSPKNFSE-ISEEVKSAVDYIVGYRQEEMSNPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|148545343|ref|YP_001265445.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida F1]
 gi|212288214|sp|A5VWK1|RIMN_PSEP1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|148509401|gb|ABQ76261.1| SUA5/yciO/yrdC, N-terminal domain [Pseudomonas putida F1]
          Length = 185

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    +I    
Sbjct: 7   VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIADNIRQFD 66

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 P          WPGP T ++       +    T    T   RV      + +  
Sbjct: 67  FLFEDFPEDWIDRMGSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPVVRELCA 124

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   S N  G+ +      +       ++ L++ G +      S I N+   + VR
Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFHGQLDLVLGGALGGRKNPSVIRNLATGEVVR 183

Query: 191 I 191
            
Sbjct: 184 P 184


>gi|121999106|ref|YP_001003893.1| Sua5/YciO/YrdC/YwlC family protein [Halorhodospira halophila SL1]
 gi|212288207|sp|A1WZH9|RIMN_HALHL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|121590511|gb|ABM63091.1| translation factor SUA5 [Halorhodospira halophila SL1]
          Length = 191

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 5/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R A   L  G  +A PTE V+GL  D RN  A+ RL  +K RP    LI   ++   + 
Sbjct: 13  VRHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESRQLA 72

Query: 72  KH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++ A +        +  WPGP+T VL   ++T      +    T   RV        L  
Sbjct: 73  RYLAPLPAEWAETIQASWPGPMTWVLP--ASTRAPRWVSGGRDTLAVRVTAHPVAAALCS 130

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G  L   SAN S +    +V  +        I  ++ G +  +   + I + +    +
Sbjct: 131 AFGGALVSTSANPSARRPARSVAEV-RRYFGTRIDALVPGRLGGLERPTPIRDGRSGAYL 189

Query: 190 R 190
           R
Sbjct: 190 R 190


>gi|115495697|ref|NP_001069018.1| yrdC domain-containing protein, mitochondrial precursor [Bos
           taurus]
 gi|122145558|sp|Q0VC80|YRDC_BOVIN RecName: Full=YrdC domain-containing protein, mitochondrial; Flags:
           Precursor
 gi|111307172|gb|AAI20308.1| YrdC domain containing (E. coli) [Bos taurus]
 gi|296488877|gb|DAA30990.1| yrdC domain-containing protein, mitochondrial precursor [Bos
           taurus]
          Length = 276

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+  +Y +K R    PL   +  ++
Sbjct: 65  TEALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVA 124

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 125 DVYRYCHVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 181

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +G PLA+ SAN S Q S  NV+      +   + LIIDGG    G        ST+V
Sbjct: 182 AQMFGGPLALTSANLSSQSSSLNVEE--FQDLWPHLSLIIDGGPIGDGQSPECRLGSTVV 239

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 240 DLSVPGKFGIIRPGC 254


>gi|327330317|gb|EGE72066.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL097PA1]
          Length = 222

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L +  + L  G  IA PT+T Y       N  A+ R+ ++++    +     +S  +
Sbjct: 30  QRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 89

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126
            V ++  +D           PG  T +L+  +T D+  +      KT   RVP       
Sbjct: 90  QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 147

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    P+   +    GQ +       +   I  ++  ++D G   +   +T+V+    
Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206

Query: 187 KKVRILRPGG 196
           + V   R  G
Sbjct: 207 EAVVTRRGAG 216


>gi|290477158|ref|YP_003470073.1| putative RNA-binding protein with unique protein fold, with
           YrdC/RibB domain [Xenorhabdus bovienii SS-2004]
 gi|289176506|emb|CBJ83315.1| putative RNA-binding protein with unique protein fold, with
           YrdC/RibB domain [Xenorhabdus bovienii SS-2004]
          Length = 189

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 71/191 (37%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS   S A       L     IA PTE V+GL  D  +  A+  L  +K RP    LI  
Sbjct: 1   MSNKVSPAFDVIITALKEEKVIAYPTEAVFGLGCDPDSEKAVNELLSLKNRPWEKGLILI 60

Query: 64  VSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                 +  +      + +       FWPGP+T V+   +TT      T    T   RV 
Sbjct: 61  ADSYERLCLYIDDEQLNDIQKETVFSFWPGPVTWVIPAKTTT--PKWLTGQFSTLAVRVT 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K+L   YG  L   SAN SG     + + +        +P +++G +      S 
Sbjct: 119 DHPLVKQLCSFYGKALVSTSANLSGLEPCRSAEEV-RQQFGNRVP-VLEGEVGGRKNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    K  R
Sbjct: 177 IRDALTGKLYR 187


>gi|282853958|ref|ZP_06263295.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139]
 gi|282583411|gb|EFB88791.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes J139]
 gi|314923353|gb|EFS87184.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL001PA1]
 gi|314981030|gb|EFT25124.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA3]
 gi|315091860|gb|EFT63836.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA4]
          Length = 222

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L +  + L  G  IA PT+T Y       N  A+ R+ ++++    +     +S  +
Sbjct: 30  QRSLNQVVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 89

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126
            V ++  +D           PG  T +L+  +T D+  +      KT   RVP       
Sbjct: 90  QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRVPEHVTALA 147

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    P+   +    GQ +       +   I  ++  ++D G   +   +T+V+    
Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206

Query: 187 KKVRILRPGG 196
           + V   R  G
Sbjct: 207 EAVITRRGAG 216


>gi|238754208|ref|ZP_04615566.1| Ribosomal modification protein RimN [Yersinia ruckeri ATCC 29473]
 gi|238707704|gb|EEQ00064.1| Ribosomal modification protein RimN [Yersinia ruckeri ATCC 29473]
          Length = 189

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS  + +      + L     IA PTE V+GL  D  +  A+  L  +K+RP    LI  
Sbjct: 1   MSKEEVSRFEGVLQALQQEEIIAYPTEAVFGLGCDPDSEKAVNDLLALKQRPWQKGLILI 60

Query: 64  VSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            ++   +  + +    D          WPGP+T V+ +  TT      T +  +   RV 
Sbjct: 61  AANYEQLLPYINDEKLDDTQRATIFSSWPGPVTWVIPVRKTT--PRWLTGHFNSLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++L   YG PL   SAN SG       + +       + P ++ G +      S 
Sbjct: 119 DHPLVQQLCTYYGKPLVSTSANLSGLEPCRTEEDV-RKQFGADFP-VLSGLVGGRLNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    +  R
Sbjct: 177 IRDALTGEHFR 187


>gi|127513177|ref|YP_001094374.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella loihica PV-4]
 gi|126638472|gb|ABO24115.1| translation factor SUA5 [Shewanella loihica PV-4]
          Length = 206

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 4/191 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +A   +  G  +  PT++ Y L        A+ R+  I++    +     V D S + 
Sbjct: 17  INQAVNVIKQGGVVVYPTDSGYALGCLLGEKDAMTRIVRIRQIENDHNFSLMVRDQSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
            +A VD  +  + K   PGP T +           L     KT   RVP       L+E 
Sbjct: 77  TYARVDNQAYRVLKHNTPGPFTFIFKATKEVP-KRLQNPKKKTIGIRVPDNVIALALLEA 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   S    G+    +    +   +  ++ +II GG       +T++++  E  + 
Sbjct: 136 LDAPLMSTSLILPGEEFTESDPEHIRDILEHQVDVIIHGGYLGE-KPTTVIDL-SEGDIE 193

Query: 191 ILRPGGLEIET 201
           ILR G  ++  
Sbjct: 194 ILREGAGDVSQ 204


>gi|242280257|ref|YP_002992386.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123151|gb|ACS80847.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio salexigens DSM
           2638]
          Length = 202

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 4/195 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A   L  G  +  PTET++ +  D+ +  A  R+  IK RP   PL   +  I  +  
Sbjct: 4   QEAVNILRTGGVLVYPTETLFAIGADAMDERAANRVALIKGRPVSKPLPLIIGSIDQLDL 63

Query: 73  HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
               V P  L L K FWPGPL++++   +  ++      +      R        +L   
Sbjct: 64  VTESVSPELLKLTKKFWPGPLSILV--KAREELPSAVKDSRGYTSVRWTDHPRAAELCLK 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG+        + +        +       K G  ST+V    + K++
Sbjct: 122 AHAPLIATSANMSGKPGTGIAAELDAELTIMVEGVYTPDPGPKGGNPSTVVEPLADNKIK 181

Query: 191 ILRPGGLEIETLKRA 205
           I R G +  E L  A
Sbjct: 182 IFRDGVVTREQLTNA 196


>gi|295099926|emb|CBK89015.1| Sua5/YciO/YrdC/YwlC family protein [Eubacterium cylindroides T2-87]
          Length = 203

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 7/204 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M     + + +  +       IAIPT+TVYG+ V   +  A+  L   K RP   P+   
Sbjct: 1   MKQYTQDQIHEVAKAFKDHEIIAIPTDTVYGVGVMYGDLDALHNLKHAKHRPETKPIPMM 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-G 122
           VS +  ++  A +D  +  +AK F PG LTLVL +    D    +   L+T   R+P   
Sbjct: 61  VSKLEQLEGIAIIDERTKVIAKHFLPGALTLVLPVDPRLDKSYNN--GLETIAIRIPDEE 118

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           F   LI+    PL + SAN+SG  +    + +L       I  I+ G   +    STIV+
Sbjct: 119 FVLSLIDELDTPLLVTSANQSGAPTALKYEDVLEQL--PNIDGIVLG-KCRALQASTIVD 175

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
              E  ++ILR G + +E L   I
Sbjct: 176 CTKED-LKILREGPISLEELVCVI 198


>gi|294673011|ref|YP_003573627.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella ruminicola 23]
 gi|294473050|gb|ADE82439.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella ruminicola 23]
          Length = 194

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 11/196 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +   + +++A E +  G  I  PT+TV+G+  D+ N  A++R+YEIK+R     LIC V 
Sbjct: 1   MKQEDDIKQAIETMRKGGVILYPTDTVWGIGCDATNAEAVKRVYEIKQREDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWP----GPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           SD  M +   +V  ++  L           P TL+LD     ++ P   A   +   R+ 
Sbjct: 61  SDARMQRYFRNVPDVAWQLIDSLKEATDAKPTTLILD--GAINLAPNLIAEDGSLGIRIT 118

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLE 177
              F+K+L   +   +   SAN SG+ +  N    +   I + +  +      +      
Sbjct: 119 NEPFSKELCFRFQKAIVSTSANISGEPAAQNYCD-IDPRILEAVDYVCWSRRQEHKPHTP 177

Query: 178 STIVNVQCEKKVRILR 193
           S+I+ ++   +V ++R
Sbjct: 178 SSIIKLKENGEVTVIR 193


>gi|255530767|ref|YP_003091139.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
 gi|255343751|gb|ACU03077.1| Sua5/YciO/YrdC/YwlC family protein [Pedobacter heparinus DSM 2366]
          Length = 188

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + KA   L  G  I  PT+TV+GL  D+ N  A  ++  IK R      I  +   + 
Sbjct: 4   TEIEKALAVLKDGGVILYPTDTVWGLGCDATNEQAAAKINAIKGRAEDKSFIVLLDTDAK 63

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           ++ +   V  ++  L + +   PLTLV       ++         +   R+    F ++L
Sbjct: 64  IQSYVTEVPDVAYDLIE-YAENPLTLVFPGAK--NLAKNVINADGSVGIRIARHEFCQQL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTIVNVQC 185
           I+ +  P+   SAN SG  +       +S  I   +  +ID           STI+ +  
Sbjct: 121 IQRFRKPITSTSANVSGAATPGFFDE-ISEEIKVAVDYVIDWEQELKISKKPSTIMKLAP 179

Query: 186 EKKVRILRP 194
             +   +R 
Sbjct: 180 GGQFSFIRR 188


>gi|71892003|ref|YP_277733.1| RNA-binding protein [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|123641086|sp|Q493I0|RIMN_BLOPB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|71796109|gb|AAZ40860.1| putative RNA-binding protein with unique protein fold, with
           YrdC/RibB domain [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 194

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
            + I  S  ++     L  G  I  PTE+V+GL  D  N  AI  L +IK R     LI 
Sbjct: 6   TIRIFSSPNMKDLLIQLSQGKVIIYPTESVFGLGCDPDNKNAISTLLKIKNRSWKKGLIL 65

Query: 63  HVSDISMVKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             ++ + + K+     L+    +++F  WPGP+T V    +        T    +   RV
Sbjct: 66  VAANYTQLLKYIDDSCLNETQRSRVFSTWPGPMTWVFPAQANR--SYWLTGQFSSVAVRV 123

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 ++L   +G PL   SAN SGQ+    ++ +    +  +IP I+   I      S
Sbjct: 124 SHFEPIQRLCLAFGKPLVSTSANLSGQLPARTIEEV-HDQLGYKIP-IMHEDILGRPNPS 181

Query: 179 TIVNVQCEKKVRI 191
            I +V   K +R 
Sbjct: 182 KIRDVMTGKLIRE 194


>gi|323700777|ref|ZP_08112689.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. ND132]
 gi|323460709|gb|EGB16574.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans
           ND132]
          Length = 203

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  + L +G  +  PTET+Y L  D+ +  A  R+ E+K R    PL   +  + M+ 
Sbjct: 1   MQELLKVLRSGGIVIYPTETLYALGCDATSEAACNRVAEVKGRSEERPLPLIIGGMDMLD 60

Query: 72  KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
                   S L LA  FWPGPL++++  L   D+    + +      R     F  +L  
Sbjct: 61  LVTGEKTRSLLDLAGAFWPGPLSILVKALP--DLPAWLSDDEGYTSVRWSGHPFASELSR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +  P+   SAN SG+      + I  + +        D    +    ST+V +    K+
Sbjct: 119 RFRKPIVATSANLSGKPPAALPEDIDPALLEMVDGSYFDPPWPRGHKASTVVRLLGSSKL 178

Query: 190 RILRPGGLEIETL 202
            I+R G + I+ L
Sbjct: 179 EIIREGEISIKKL 191


>gi|319899941|ref|YP_004159669.1| translation factor SUA5 [Bacteroides helcogenes P 36-108]
 gi|319414972|gb|ADV42083.1| translation factor SUA5 [Bacteroides helcogenes P 36-108]
          Length = 187

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+T++G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMSEGGIILYPTDTIWGIGCDATNEDAVRRVYEIKQRSDSKAMLVLVDSSVK 62

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V  +   V  ++  L       PLT++       ++     A   +   RV    F+K+L
Sbjct: 63  VDFYVQDVPEIAWDLID-LADKPLTVIYS--GARNLASNLLAEDGSVGIRVTNEEFSKRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
              +   +   SAN SGQ S  +    ++  I   +  I+     ++G    S+I+ +  
Sbjct: 120 CRQFRKAIVSTSANVSGQPSPGSFCE-ITEDIKSAVDYIVKYRQEEMGHPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|257056019|ref|YP_003133851.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017]
 gi|256585891|gb|ACU97024.1| translation factor SUA5 [Saccharomonospora viridis DSM 43017]
          Length = 202

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +  + L +   +  PT++ + L     N   + R+  I++    +       D +
Sbjct: 10  PRAIAQTVKALRSDGVVVYPTDSCFALGCALGNKQGMDRIRAIRRLDQRHHFTLVCRDFA 69

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   ++       K   PG  T +L          L     KT   R+P     + L
Sbjct: 70  QLAQFVHMNNAVFRAIKAAVPGGYTFILPATKEVP-RQLWHPKKKTVGARIPDHTVAQAL 128

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   +    G+         +   +   + L++D G    G++ST V    + 
Sbjct: 129 LTELGEPIVSSTLLLPGEEDPMTQGWDIKERLDASVDLVLDSGDC--GVDSTTVVDFSDG 186

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  + +  +
Sbjct: 187 VPEVVREGTGDPDRFR 202


>gi|149928539|ref|ZP_01916768.1| Sua5/YciO/YrdC/YwlC family protein [Limnobacter sp. MED105]
 gi|149822738|gb|EDM81996.1| Sua5/YciO/YrdC/YwlC family protein [Limnobacter sp. MED105]
          Length = 218

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 80/188 (42%), Gaps = 3/188 (1%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A + +++G   AIPT++ Y L     +  A+ RL  +K       L     D+S +  
Sbjct: 18  KQAADLINSGGIAAIPTDSCYALVCHLDDKNAVERLRRLKGISEKQHLALLCKDLSELGS 77

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           +A V+ +   L K  +PGP T +L+         +S  + K+   RVP     + L+E  
Sbjct: 78  YAKVNNVQYRLLKSVFPGPYTFILEATKEVP-KRVSHPSKKSIGLRVPAHAVVQGLLEHI 136

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
              L   +    G             ++  ++ LI+D G       +T+++   E+ + +
Sbjct: 137 EGALIATTLQLPGMEEPARSGWEAQEAVGNDVDLIVDDGEYCGAFPTTVIDWTSEEPL-V 195

Query: 192 LRPGGLEI 199
           +R G   +
Sbjct: 196 VRIGAGPL 203


>gi|289208889|ref|YP_003460955.1| Sua5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. K90mix]
 gi|288944520|gb|ADC72219.1| Sua5/YciO/YrdC/YwlC family protein [Thioalkalivibrio sp. K90mix]
          Length = 204

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 4/197 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+  + L  G  IAIPT+  Y LA    +     R+  I++    + L     D+S
Sbjct: 11  PRLVRQVLDRLHEGTVIAIPTDACYALACLPGDKAGADRIRRIRQVDETHHLTLLCRDLS 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD  +  L K   PGP T +L          L     +T   RVP       L
Sbjct: 71  ELGVYAKVDNTAFRLMKGLTPGPYTFILPATREVP-RRLQHPKRRTIGLRVPDSRIVSAL 129

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+    +   ++   + K +  ++DGG   +   ++++++  + 
Sbjct: 130 LEELGSPLMTATLQLPGEDLPLSEPWVIDERLSKVVDEVVDGGAGTL-EPTSVIDLTGDV 188

Query: 188 KVRILRPGGLEIETLKR 204
              I+R G  ++  L+ 
Sbjct: 189 P-EIIRHGVGDVAFLEE 204


>gi|262089750|gb|ACY24844.1| Sua5/YciO/YrdC/YwlC family protein [uncultured organism]
          Length = 173

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 5/173 (2%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79
            G  +A PTE V+GL  +  +  A+ RL ++K+RP    LI   +DIS+ +     ++ +
Sbjct: 3   QGGVVAYPTEAVWGLGCNPFSEDAVMRLLDMKQRPVNKGLILLAADISLFEPFIYHLNDI 62

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIP 138
                K  WPGP+T ++            T +      RV        L   +G P+   
Sbjct: 63  QRQRIKKTWPGPVTWLIPN--NGLAPKWITGDYTGVALRVTDHPVAAGLSRAFGAPIVST 120

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           S N  G+    +   +       E+  I  G + K    S I ++   + VR 
Sbjct: 121 SCNLQGRAPARSGFDV-HRYFGDELDAITSGAVGKRANPSEIRDLMTGEVVRA 172


>gi|290955357|ref|YP_003486539.1| hypothetical protein SCAB_7831 [Streptomyces scabiei 87.22]
 gi|260644883|emb|CBG67969.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 206

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +  + +  G  IA PT++ + L     +   I R+  I++    +       + +
Sbjct: 14  PRAIGQVADSIRQGGLIAYPTDSCFALGCQLGSRDGIERIRTIRQLDDRHHFTLVCENFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   VD       K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QLGQFVHVDNDVFRAVKASTPGSYTFILPATREVP-RKLLHPKKKTVGVRIPDHRVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  ++D G       +T+++     
Sbjct: 133 LAELGEPLVSSTLLLPDEEEPLTQGWEIKERLDYLVDAVVDSGDCGT-EPTTVIDFSS-G 190

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G  +    +
Sbjct: 191 EAEIIRKGAGDTSRFE 206


>gi|254994878|ref|ZP_05277068.1| hypothetical protein AmarM_01965 [Anaplasma marginale str.
           Mississippi]
          Length = 197

 Score =  149 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +  PT+T+Y LA  + +  +++RLYEIK+R    P+   ++ ++ ++
Sbjct: 1   MQRVVEALRKEQIVCFPTDTLYALACSALSANSVQRLYEIKRRQYHKPIPILLNSLAAIR 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           K AS+      + +   PGP+T V+ L  T  +         T   R+P     + ++E 
Sbjct: 61  KFASLKDEDWGIIERLSPGPVTFVVPLHDTQSLPGEFF--RGTVGVRIPDHAMARTILEE 118

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G P+A  SAN SG         I    I   +  +++   +  G+ ST+ +VQ  K +R
Sbjct: 119 FGGPVAATSANLSGMPGARRAMEIPRE-IRDCVSELMEDDSAVGGMCSTVFDVQSRKVLR 177

Query: 191 I 191
           I
Sbjct: 178 I 178


>gi|213963761|ref|ZP_03392011.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sputigena Capno]
 gi|213953641|gb|EEB64973.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sputigena Capno]
          Length = 185

 Score =  149 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 6/180 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L  G  I  PT+TV+GL  D+ NP A+ ++++IK+R     LI  VSDI M++++ + 
Sbjct: 9   EILKEGKIILYPTDTVWGLGCDATNPEAVAKIFQIKQRSESKSLIILVSDIQMLQQYVTA 68

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPL 135
            P  +         P T++        +     A   T   R V   F +++I  +G P+
Sbjct: 69  VPSKVLAYLQTLQEPTTIIYSHP--LHLAKNVIAADDTVAIRVVQDAFCQQMIADFGKPI 126

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVNVQCEKKVRILR 193
              SAN SG+ +      ++   I  +   ++      ++I   S ++    + ++ ILR
Sbjct: 127 VSTSANISGEPTPL-YYQLIDPKIIAQCDYVVPYRQDDTQIKNPSRLIRFDADGEILILR 185


>gi|289664817|ref|ZP_06486398.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 187

 Score =  149 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I     + +++
Sbjct: 7   LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVMRLLEIKRRPVDKGVIVVAPSVDVLR 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P         WPGP T +L +  T       T        R+        L
Sbjct: 67  DWVDIDALEPARRQDVLASWPGPHTWILPV--TERAPRWVTGEHDGLAVRISAHPVVAAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  +
Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGEVGTLAQPTQIRDARSGQ 183

Query: 188 KVRI 191
            +R 
Sbjct: 184 ILRD 187


>gi|227354900|ref|ZP_03839314.1| translation factor [Proteus mirabilis ATCC 29906]
 gi|227164982|gb|EEI49821.1| translation factor [Proteus mirabilis ATCC 29906]
          Length = 189

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 8/180 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
             E L     IA PTE V+G+  D  + +A+  L E+K+R     LI    +   +K + 
Sbjct: 12  IIEALQNNQVIAYPTEAVFGVGCDPDSESAVMALLELKQRAIEKGLILIADNYEQLKPYI 71

Query: 75  SVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             + L+          WPGP+T V+   S T      T    +   RV      K L   
Sbjct: 72  DDNALTQEQRERMFASWPGPITWVIPAKSIT--PKWLTGRFSSLAVRVTDHPIVKALCVA 129

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           YG PL   SAN SG     +V+ +        I  I++G +      S I +    +  R
Sbjct: 130 YGKPLVSTSANLSGLPPCRSVEEV-QEQFRNRI-AIVNGEVGGRKNPSEIRDALTGELYR 187


>gi|167765241|ref|ZP_02437354.1| hypothetical protein BACSTE_03629 [Bacteroides stercoris ATCC
           43183]
 gi|167696869|gb|EDS13448.1| hypothetical protein BACSTE_03629 [Bacteroides stercoris ATCC
           43183]
          Length = 204

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 9/195 (4%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICH 63
              +   L++  + L+ G  I  PT+T+Y +        AI R+ ++K   P  N L   
Sbjct: 8   KNNNPADLQQVIDILNDGGIIIYPTDTMYAIGCHGLKERAIERICQLKNTDPKKNNLSII 67

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             D+S + ++A  D  +  L K   PG  T +L+    T   P    N K    R+P   
Sbjct: 68  CYDLSSISEYAKFDNNTFKLMKRNLPGAFTFILN---GTVRLPKIFRNRKEVGIRMPDHP 124

Query: 123 FTKKLIETYGHPLAIPSANR--SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             ++L      P+   +     +  I       ++       + L+IDGGI  I   ST+
Sbjct: 125 IIRELARLLDAPIMTATLPHNENEDIEYCTDPELIDEKFGNIVDLVIDGGIGGIEG-STV 183

Query: 181 VNVQCEKKVRILRPG 195
           V+     +  I+R G
Sbjct: 184 VDCTG-GEAEIVRQG 197


>gi|307107023|gb|EFN55267.1| hypothetical protein CHLNCDRAFT_35508 [Chlorella variabilis]
          Length = 284

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 4/184 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L     IA+PT+T+YGLA  +R+   +  +Y  K+R    PL   V+DI+ V + A
Sbjct: 83  AAEALGRAEVIAVPTDTLYGLAACARSSQGVAHIYATKRRGDHKPLAIAVADIADVPRFA 142

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
            V  L   L +   PGP+TL+L       +       +     R+P   F + +   +  
Sbjct: 143 DVQHLPEGLLEDLLPGPVTLLLQRRPDAPLAAQFNPGVGAIGIRIPDSAFIRAVCRQHRA 202

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRIL 192
            LA+ SAN SG +S  +V       +     L+ DGG    G   ST++++    +  + 
Sbjct: 203 ALALTSANISGSMSSVDVGE--FQELWPSCSLVFDGGQLDAGRSGSTVIDLTQPGQFSVA 260

Query: 193 RPGG 196
           R G 
Sbjct: 261 RRGA 264


>gi|88601863|ref|YP_502041.1| Sua5/YciO/YrdC/YwlC [Methanospirillum hungatei JF-1]
 gi|88187325|gb|ABD40322.1| translation factor SUA5 [Methanospirillum hungatei JF-1]
          Length = 180

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82
             +  PT+T+YGL  D+ +  AI +++E K R    P+   VSD  M+   A VD ++  
Sbjct: 4   GLVVYPTDTLYGLGADALSDEAILKVFEAKGREYHKPISIAVSDPDMIGAVAYVDEMAEQ 63

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSAN 141
             + F PGP+TL+L   +   +    TA  K    R P      +LI  Y  P+   SAN
Sbjct: 64  FIEEFLPGPVTLILP--ARNILSTRLTAGTKKIGIRYPNHEVALELISRYDTPITATSAN 121

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            SG      +       +C              G  ST+V++    + R +   G +IE+
Sbjct: 122 LSGGPDPVTI------DLCNVPYDCAVNVGPLSGTPSTVVDL----EFREIIRVGADIES 171

Query: 202 LKRAIS 207
           +   ++
Sbjct: 172 VASFLA 177


>gi|227496187|ref|ZP_03926493.1| RNA binding protein [Actinomyces urogenitalis DSM 15434]
 gi|226834270|gb|EEH66653.1| RNA binding protein [Actinomyces urogenitalis DSM 15434]
          Length = 205

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + K  + L  G  +A PT++ Y LA    N   + R+  I++    +      +D +
Sbjct: 14  ARLVSKVVDTLHDGGLVAYPTDSGYALACAPGNKEGLDRIRAIRQLDDKHNFTFVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
                A V   +  L K   PGP T +L          L+     T   R+P    T+ L
Sbjct: 74  QAGPLAIVGNNAFRLIKRLTPGPWTFILKGTKEVPRMTLNPKKH-TLGVRIPDHAITQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +  +G P+   +  R G          +  ++   I ++I+G ++     +T+V++  + 
Sbjct: 133 VAGFGAPILSSTFIRPGNEEPETSGWEIEDALGHLIDVVIEGPVTST-EPTTVVDLTSDV 191

Query: 188 KVRILRPGGLEIETL 202
              + R G  ++  L
Sbjct: 192 P-EVAREGAGDVSLL 205


>gi|33592648|ref|NP_880292.1| hypothetical protein BP1556 [Bordetella pertussis Tohama I]
 gi|33596862|ref|NP_884505.1| hypothetical protein BPP2258 [Bordetella parapertussis 12822]
 gi|33572294|emb|CAE41846.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|33573563|emb|CAE37557.1| conserved hypothetical protein [Bordetella parapertussis]
 gi|332382065|gb|AEE66912.1| hypothetical protein BPTD_1539 [Bordetella pertussis CS]
          Length = 208

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A ++L  G  +A+PT++ Y +     +  A   L  ++     + L     D++
Sbjct: 14  PRLIKQAAQWLSDGGLVAVPTDSSYAVVAPLDDKAAADALRRLRGLDERHHLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + + A VD     L K   PGP T +L+         +S  + KT   RVP       L
Sbjct: 74  EIGQVARVDNKQYRLLKAATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPAHAVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +     +    N    +      E+  +ID G       +T+V++   +
Sbjct: 133 LEQVGAPLLSTTLIPRDEEDALNDPEAIQERYQHELAAVIDAGACPQ-TPTTVVDLTGAE 191

Query: 188 KVRILRPGG 196
              + R GG
Sbjct: 192 PAVLRRGGG 200


>gi|197294283|ref|YP_001798824.1| Translation factor [Candidatus Phytoplasma australiense]
 gi|171853610|emb|CAM11481.1| Translation factor [Candidatus Phytoplasma australiense]
          Length = 188

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 6/182 (3%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
            I  PT+TVYG+ V   +   ++ +Y++KKR     +I   S +   +     + +S  L
Sbjct: 10  IIIFPTDTVYGMGVSLYDEKGLKEIYQLKKRSLQKNIIVLCSSLKEAQTLVKFNEISYQL 69

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A  F+PGPLTL+L     T    L     KT   R+P       +     PL   S N S
Sbjct: 70  ATKFFPGPLTLIL----KTQTSYLKKTGQKTLGIRIPNHPLALSLLKKYGPLKTTSVNES 125

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           G+    N  + +      ++  I       + + STIV+    K + +LR G +    +K
Sbjct: 126 GKE-PLNYYNTIYQMYNNKVGFIYPNDYPILKVASTIVDATTNK-LIVLRQGSISEAEIK 183

Query: 204 RA 205
           + 
Sbjct: 184 KI 185


>gi|308799281|ref|XP_003074421.1| yrdC protein-related (ISS) [Ostreococcus tauri]
 gi|116000592|emb|CAL50272.1| yrdC protein-related (ISS) [Ostreococcus tauri]
          Length = 239

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 99/199 (49%), Gaps = 7/199 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+  A   L  G  IA+PT+T+YG A  + +  A+RRLYEIK R A   +   V D+  
Sbjct: 31  DAVALAVGALRRGGVIAVPTDTIYGFAARAEDGAAVRRLYEIKGRKATVAVAIAVGDVGD 90

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVP-CGFTKK 126
           + ++     L   L     PGP+T++L   ++ +          +     RVP   F ++
Sbjct: 91  IGRYGECSHLREGLLGRILPGPVTVLLRRRASEEGGASSELNPGVDLIGIRVPASDFVRE 150

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNV-Q 184
           +   +G  +A+ SANRSG+ S T+V+    + +      + DGG+ +   L STIV++  
Sbjct: 151 VCRAHGSAIALTSANRSGETSTTSVEE--FAELWDACAEVFDGGVIETKRLGSTIVDLSS 208

Query: 185 CEKKVRILRPGGLEIETLK 203
            + +  ++R G    E L+
Sbjct: 209 TDGRYGVVREGEKCAELLE 227


>gi|162418116|ref|YP_001606745.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis Angola]
 gi|162350931|gb|ABX84879.1| Sua5/YciO/YrdC/YwlC family protein [Yersinia pestis Angola]
          Length = 176

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 4/174 (2%)

Query: 27  IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL 86
            PT++ Y L     + TA+ R+  I++    +       D+S +  +A VD  +  L K 
Sbjct: 2   YPTDSGYALGCRLEDKTAMERICRIRQLDGNHNFTLVCRDLSELSTYAYVDNSAFRLIKN 61

Query: 87  FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ 145
             PG  T +L          L     KT   RVP       L++  G PL   +    G 
Sbjct: 62  NTPGNYTFILKATKEVP-RRLMNDKRKTIGLRVPSNPIALALLDALGEPLMSTTLMLPGN 120

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
               +    +  ++ K++ LII GG S     +T++++  +    ++R G  ++
Sbjct: 121 DFAESDPEEIKENLGKQVDLIIHGG-SLGQQPTTVIDLT-DSAPEVIREGAGDV 172


>gi|89902007|ref|YP_524478.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118]
 gi|89346744|gb|ABD70947.1| Sua5/YciO/YrdC/YwlC [Rhodoferax ferrireducens T118]
          Length = 207

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A   LD G  +A+PT++ Y L     +  A  +L  I+     + L     D+S
Sbjct: 14  PRLLKQAITLLDQGDILAVPTDSSYALVCHLDDKAAADKLRRIRGVDDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD       K   PGP T +L          LS  + KT   RVP     + L
Sbjct: 74  ELANYAQVDNQQFRRIKSATPGPYTFILQASKEVP-RRLSHPSRKTIGLRVPEHKVLQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +  PL   +    G++   N    +     K+I  +ID G       +T+V++   +
Sbjct: 133 LDLHNGPLLATTLIPPGEVEPINDALEIRERYKKQIAAVIDAGACPR-EPTTVVDLTESE 191

Query: 188 KVRILRPGGLEIETL 202
            + ++R G   +  L
Sbjct: 192 PI-VIRQGRGSLAAL 205


>gi|319789197|ref|YP_004150830.1| Sua5/YciO/YrdC/YwlC family protein [Thermovibrio ammonificans HB-1]
 gi|317113699|gb|ADU96189.1| Sua5/YciO/YrdC/YwlC family protein [Thermovibrio ammonificans HB-1]
          Length = 206

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 6/198 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L      ++AG    +PT+T+YGL   + N  A+ R+Y IK R    PLI        
Sbjct: 8   EELPTIASLINAGAVGCLPTDTLYGLVGSALNGNAVSRVYRIKGRDPNKPLIVLFKSPEQ 67

Query: 70  VKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           + +    V        K  +P P+TLVL L  ++    +          RVP       +
Sbjct: 68  LGELGVKVPKALEKGIKALYPAPVTLVLPLSESSPFRSIF--KRDDLAVRVPNSPLLLEL 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                PL  PSAN  G     N +  L       +    +G      + STIV V  E +
Sbjct: 126 LELTGPLFAPSANPQGLKPAENCRECLK-YFKNAVDFCAEGRAGN--VASTIVKVLPEGE 182

Query: 189 VRILRPGGLEIETLKRAI 206
           +++LR G +E E +K  +
Sbjct: 183 LKLLREGAVEFEKVKEVL 200


>gi|307212489|gb|EFN88220.1| YrdC domain-containing protein, mitochondrial [Harpegnathos
           saltator]
          Length = 243

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 9/191 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            ++  A   L     IA+PT+T+YGLA  + +  AI RLY+IKKR    P+   +S++  
Sbjct: 36  RSIGIAATLLQQNKVIAVPTDTIYGLACLASSTEAIERLYQIKKRDERKPVAICLSNVKD 95

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           V + A  D L   L +   PGP T++L     ++++P    ++     RVP     + I 
Sbjct: 96  VTQWAVTDNLPSCLLEKLLPGPYTIILKH--KSNLNPALNPDIDNIGIRVPSSRFMRSIA 153

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVNVQ 184
               P+A+ SAN S + S         S +  E+  I              + ST+V++ 
Sbjct: 154 KIVGPIALTSANISNKPSTLYPDE--FSMLWPELDGIFYDLTCMKRTNAHRVGSTVVDLS 211

Query: 185 CEKKVRILRPG 195
                +I+R G
Sbjct: 212 QPGFYKIVRHG 222


>gi|325000327|ref|ZP_08121439.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia sp. P1]
          Length = 206

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++ +  + +  G  IA PT++ + L     N   I R+ +I+K    +      ++ +
Sbjct: 14  PRSIGQVADLVREGGLIAYPTDSCFALGCSLGNKEGIDRIRQIRKLDDKHHFTLVCAEFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            + +   +        K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 74  QLGQFVQISNAVFRAVKASTPGSYTFILPATKEVP-RRLLHPKKKTVGVRIPDHATTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G          +   +  ++  +ID G       +T+V++  ++
Sbjct: 133 LANLGEPLLSSTLLLPGHDEPLTQGWDIKEELDNQVDAVIDSGDCGT-EPTTVVDLSGDE 191

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  +    +
Sbjct: 192 P-EIIRTGAGDPSRFE 206


>gi|332672177|ref|YP_004455185.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484]
 gi|332341215|gb|AEE47798.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas fimi ATCC 484]
          Length = 206

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +  + L  G  IA PT++ Y L     +     R+  I+     +      +D +
Sbjct: 14  PRAITQVVDLLREGGLIAYPTDSCYALGCRVGDQEGAERIRRIRHLDDRHHFTLVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D  +    K   PGP T +L          L+    ++   R+P     + +
Sbjct: 74  QLGQLVHLDNAAFRAIKAATPGPYTFILKATPEVP-RRLAHPKKRSVGVRIPDSRVVQAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    GQ        ++   +  ++  ++D G     + +T+V+   E 
Sbjct: 133 LHELGEPLLSSTLLLPGQEEPLTEGWLIKEELDHQVDAVVDAGDCDT-VPTTVVDWT-EG 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 TPEVVRVGA 199


>gi|256379000|ref|YP_003102660.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827]
 gi|255923303|gb|ACU38814.1| Sua5/YciO/YrdC/YwlC family protein [Actinosynnema mirum DSM 43827]
          Length = 206

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 4/195 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+ +A E + AG  IA PT++ Y L     N   + R+ +I+     +       D + 
Sbjct: 15  RAIDQAVEVVRAGGLIAYPTDSCYALGCQLGNKEGLDRIRQIRNLDDKHHFTLVCRDFAQ 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           + + A V+  +    K   PG  T +L          L     KT   R+P     + L+
Sbjct: 75  LGQFAYVENAAFRAIKAATPGSYTFILSATREVP-RRLLHPKKKTVGVRIPDNAVVQALL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G PL   +     Q         +   +   +  ++D G       +T+V+     +
Sbjct: 134 EALGEPLLSSTLLLPDQEEPLVQGWEIKERLDHVVDAVLDSGDCGT-EPTTVVDFSS-GE 191

Query: 189 VRILRPGGLEIETLK 203
             +LR G  +    +
Sbjct: 192 AEVLRVGAGDPSRFE 206


>gi|253991647|ref|YP_003043003.1| ribosome maturation factor [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783097|emb|CAQ86262.1| conserved hypothetical Protein [Photorhabdus asymbiotica]
          Length = 189

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 76/191 (39%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS   S A       L A   IA PTE V+GL  D  +  AI  L  +KKRP    LI  
Sbjct: 1   MSNEASPAFENVLTALKAEKVIAYPTEAVFGLGCDPDSVKAINELLILKKRPWQKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +   ++ +     L+    +     WPGP+T V+   S+T      T    T   RV 
Sbjct: 61  ADNYEQLQPYLDDKLLTAKQKEAMFTCWPGPMTWVIPAKSST--SKWLTGQFSTLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K+L   YG PL   SAN +G       + +       ++P I++G +      S 
Sbjct: 119 DHPLVKQLCTFYGKPLVSTSANLNGLEPCRTAEEV-RQQFGDKLP-ILNGDVGGRENPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    +  R
Sbjct: 177 IRDALTGELYR 187


>gi|326318414|ref|YP_004236086.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375250|gb|ADX47519.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 211

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A+PT++ Y L     +  A+ RL  I++    + L     D+S V  +A VD   
Sbjct: 26  RGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQ 85

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPLAIPS 139
             L K   PGP T +LD         +S    KT   RVP     +L+    G PL   +
Sbjct: 86  YRLVKQATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 144

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ---CEKKVRILRPGG 196
               G+    N    + +    +I  ++D G   +   +T+V++         R++R G 
Sbjct: 145 LIPPGETEPMNDPAEIRARFEHQIDAVVDAGACPL-EPTTVVDLTDMATGGDPRVVREGR 203

Query: 197 LEIETL 202
             +  L
Sbjct: 204 GPLSAL 209


>gi|120612352|ref|YP_972030.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax citrulli AAC00-1]
 gi|120590816|gb|ABM34256.1| Sua5/YciO/YrdC/YwlC family protein [Acidovorax citrulli AAC00-1]
          Length = 211

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 6/186 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
            G  +A+PT++ Y L     +  A+ RL  I++    + L     D+S V  +A VD   
Sbjct: 26  RGAVLAVPTDSSYALVCQLDDKDAVDRLRRIRQVDEKHHLTLLCRDLSEVSNYARVDNRQ 85

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY-GHPLAIPS 139
             L K   PGP T +LD         +S    KT   RVP     +L+    G PL   +
Sbjct: 86  YRLVKQATPGPYTFILDATKEVP-RRVSHPQRKTIGLRVPDRKGLQLLLELHGAPLLATT 144

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ---CEKKVRILRPGG 196
               G+    N    + +    +I  ++D G   +   +T+V++         R++R G 
Sbjct: 145 LIPPGETEPMNDPSEIRARFEHQIDAVVDAGACPL-EPTTVVDLTDMATGGDPRVVREGR 203

Query: 197 LEIETL 202
             +  L
Sbjct: 204 GPLSAL 209


>gi|294664410|ref|ZP_06729767.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605816|gb|EFF49110.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 187

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 7/190 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  L +A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S
Sbjct: 1   MTDTLDLGRAVAALTQGGVIAYPTEAVWGLGCDPRQQAAVMRLLEIKRRPVEKGVIVVAS 60

Query: 66  DISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + +++    +   +P         WPGP T +L +  T       T        R+   
Sbjct: 61  SVDVLRDWVDIEALEPARRQDVLTSWPGPHTWILPI--TDRAPRWVTGEHDGLAVRISAH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L   +G PL   SAN +G+    + +  L  ++   I  ++DG    +   + I 
Sbjct: 119 PVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177

Query: 182 NVQCEKKVRI 191
           + +  + +R 
Sbjct: 178 DARSGQILRD 187


>gi|253566324|ref|ZP_04843778.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945428|gb|EES85866.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 187

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 8/189 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             ++KAC+ +  G  I  PT+TV+G+  D+ N  A+RR+YEIK+R     ++  V     
Sbjct: 3   EDIKKACQVMSEGGVILYPTDTVWGIGCDATNEDAVRRVYEIKRRADSKAMLVLVDSPVK 62

Query: 70  VKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V+ +    P ++  L ++     LT++       ++     A   +   RV    F+++L
Sbjct: 63  VEFYVQDVPSVAWDLIEVA-DKSLTIIYS--GARNLASNLLAEDGSVGIRVTNEAFSRRL 119

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQC 185
            + +   +   SAN SGQ    N    +S  I   +  I++     +     S+I+ +  
Sbjct: 120 CQQFRKAIVSTSANVSGQPGAANFNE-ISEEIKSSVDYIVNFRQDDMSRPKPSSIIKLDK 178

Query: 186 EKKVRILRP 194
              ++I+R 
Sbjct: 179 GGVIKIIRE 187


>gi|294625227|ref|ZP_06703867.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600455|gb|EFF44552.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 187

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 7/190 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  L +A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S
Sbjct: 1   MTDTVDLGRAVAALTQGGVIAYPTEAVWGLGCDPRQQAAVMRLLEIKRRPVEKGVIVVAS 60

Query: 66  DISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           ++ +++    +   +P         WPGP T +L +  T       T        R+   
Sbjct: 61  NVDVLRDWVDIEALEPARRQDVLTSWPGPHTWILPI--TDRAPRWVTGEHDGLAVRISAH 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L   +G PL   SAN +G+    + +  L  ++   I  ++DG    +   + I 
Sbjct: 119 PVVAALCGAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGETGALAQPTQIR 177

Query: 182 NVQCEKKVRI 191
           + +  + +R 
Sbjct: 178 DARSGQILRD 187


>gi|37523508|ref|NP_926885.1| hypothetical protein gll3939 [Gloeobacter violaceus PCC 7421]
 gi|35214512|dbj|BAC91880.1| gll3939 [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 10/200 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +  + L AG  +  PT+T Y +  D  +  AI R+  IK+     PL      +S
Sbjct: 14  PERLGRIVQALRAGAVLLYPTDTTYAIGCDLLHKGAIERVQRIKRLSNDKPLTFLCPSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKK 126
            V  +A V   +  L +   PGP T +L   +T  +  L      +T   RVP     + 
Sbjct: 74  NVATYARVGDDAYRLMRHLLPGPYTFLLP--ATRALPKLVLDPKRRTTGIRVPDHPLCQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-----IGLESTIV 181
           L+   G+PL   SA  +    I   ++ L  ++   +  I++          +   ST++
Sbjct: 132 LLAGLGNPLISTSARSADGSEI-RYEYELFEALAPVVDGIVELDPPAQDGLLLTQVSTVI 190

Query: 182 NVQCEKKVRILRPGGLEIET 201
           ++  E+ V + R  G E   
Sbjct: 191 DLSGEQPVVVRRGLGWERAA 210


>gi|198283581|ref|YP_002219902.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665262|ref|YP_002426205.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248102|gb|ACH83695.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517475|gb|ACK78061.1| Sua5/YciO/YrdC/YwlC family protein [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 211

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A E L  G  +  PT+T Y L        +  RL  I++    + L    S IS
Sbjct: 14  PRLLAQAAEVLRGGGLLVYPTDTCYALGCTVAARESQERLRRIRQLDLQHDLSLLFSSIS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A +D  +  L +   PGP T +L          L+    ++   R+P     + L
Sbjct: 74  QLTDYAQLDDRAYALLRRILPGPYTFILPATRDVP-RRLADPKKRSIGVRIPASPLCEGL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G PL   +    G  +       +  ++  ++ +++  G   +   ST+V++  + 
Sbjct: 133 IAELGEPLMSSTLQLPGATAPLTDPDEICKTMGNQVDMVLLSGPGGV-RCSTVVDLL-QW 190

Query: 188 KVRILRPGGLEIETL 202
             R+LR G  +   L
Sbjct: 191 PPRLLREGAGDPAAL 205


>gi|307701295|ref|ZP_07638316.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16]
 gi|307613456|gb|EFN92704.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16]
          Length = 222

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 22/225 (9%)

Query: 1   MQIMSITDSNA------LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+I  +   +       L      + +   + IPT+TVYG+A     P A++RL   K R
Sbjct: 1   MEIFRVDPESGALSESELAACEAAVKSSELLVIPTDTVYGIASVPFEPAAVQRLQGAKGR 60

Query: 55  PAMNPLICHVSDISMVKKH----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104
               P    VS ++ +             A +   +  LA  FWPGPLT++         
Sbjct: 61  GEDFPPPVLVSGVAALDSLLERPAIFGAPAPLYEAARRLATAFWPGPLTIIARANPRLGW 120

Query: 105 HPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
           +   T    T   R P       I     PLA+ SANR G    T++    ++    ++ 
Sbjct: 121 NLGKTGG--TIALRQPNHPVALQILEATGPLAVTSANRHGAPPATDISAA-TAYFWDKVA 177

Query: 165 LIIDGGISKIGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAI 206
           + +D G S  G  STIVN+       +  I R G +    ++  +
Sbjct: 178 VYVDAGESPSGQPSTIVNLTKLDAAGQPVIARAGAITAAEIRAVL 222


>gi|306817931|ref|ZP_07451669.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239]
 gi|304649274|gb|EFM46561.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239]
          Length = 222

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 22/225 (9%)

Query: 1   MQIMSITDSNA------LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR 54
           M+I  +   +       L      + +   + IPT+TVYG+A     P A++RL   K R
Sbjct: 1   MEIFRVDPESGALSESELAACEAAVKSSELLVIPTDTVYGIASVPFEPAAVQRLQGAKGR 60

Query: 55  PAMNPLICHVSDISMVKKH----------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104
               P    VS ++ +             A +   +  LA  FWPGPLT++         
Sbjct: 61  SEDFPPPVLVSGVAALDSLLERPAIFGAPAPLYEAARRLATAFWPGPLTIIARANPRLGW 120

Query: 105 HPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
           +   T    T   R P       I     PLA+ SANR G    T++    ++    ++ 
Sbjct: 121 NLGKTGG--TIALRQPDHPVALQILEATGPLAVTSANRHGAPPATDISAA-TAYFWDKVA 177

Query: 165 LIIDGGISKIGLESTIVNVQ---CEKKVRILRPGGLEIETLKRAI 206
           + +D G S  G  STIVN+       +  I R G +    ++  +
Sbjct: 178 VYVDAGESPSGQPSTIVNLTKLDAAGQPVIARAGAITAAEIRAVL 222


>gi|269219483|ref|ZP_06163337.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211062|gb|EEZ77402.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 205

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 76/197 (38%), Gaps = 8/197 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  E + +G  IA PT++ Y L     N   + R+  I++    +       D +
Sbjct: 14  PRLVDKVVEHIRSGEVIAFPTDSGYALGCSLGNKEGLERIRSIRQVGDKHHFTLLCHDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCG-FTKK 126
            + + A V      L K   PGP T +L    T D+  +       T   R+P    ++ 
Sbjct: 74  QLGQLAIVGNSEFRLIKSLTPGPYTFIL--KGTKDVPRISVNPKKHTVGARIPDHRISQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           ++E  G  +   S    G+         +   +   + ++++G     G  +T+++    
Sbjct: 132 ILEALGEAMLTSSLILPGEEDPMVNGWEVKDDLGHLVDVVVEG-PCGEGGPTTVLDFVKG 190

Query: 187 KKVRILRPGGLEIETLK 203
              +I R G   +E ++
Sbjct: 191 ---KIARVGAGSVEGIE 204


>gi|78484365|ref|YP_390290.1| SUA5/yciO/yrdC-like [Thiomicrospira crunogena XCL-2]
 gi|123556161|sp|Q31JQ7|RIMN_THICR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|78362651|gb|ABB40616.1| translation factor SUA5 [Thiomicrospira crunogena XCL-2]
          Length = 186

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 10/184 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ A + +  G  +A PTE VYGL  D  N  A ++L  +K+RP    +I   S I+ ++
Sbjct: 8   IKAAAKLITEGGVLAYPTEAVYGLGCDPLNKDAFQQLLRLKQRPLEKGVILIASSIAQIE 67

Query: 72  KHASVDPLSL-HLAKLFWP---GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
               +   +        W     P+T VL   +T ++    T    T   RV        
Sbjct: 68  PFVKLHNQAWTEKVLASWQVLNQPVTWVLP--ATDNVPEWITGGRNTVAVRVTQHPDVMA 125

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L      P+   SAN SG+  +T ++    +        I+ G +  I   S I   Q +
Sbjct: 126 LCNQLNFPIVSTSANLSGEDPVTTMEACCKAF---PALAIMQGNLMGISAPSQIWEAQTQ 182

Query: 187 KKVR 190
           K++R
Sbjct: 183 KRLR 186


>gi|325272507|ref|ZP_08138885.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas sp. TJI-51]
 gi|324102368|gb|EGB99836.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas sp. TJI-51]
          Length = 185

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    +I    
Sbjct: 7   VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVADNIRQFD 66

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 P          WPGP T ++       +    T    T   RV      + +  
Sbjct: 67  FLFEDFPEDWIDRMGSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPVVRELCA 124

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   S N  G+ +      +       ++ L++ G +      S I N+   + VR
Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFRGQLDLVLGGALGGRKNPSVIRNLATGEVVR 183

Query: 191 I 191
            
Sbjct: 184 P 184


>gi|118089561|ref|XP_420283.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 687

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 9/205 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ LR   + L+ G    +PT+TVY LA   R+P AI ++Y IK RP   P+   +S++ 
Sbjct: 475 TSGLRTIADLLNTGAVCGVPTDTVYALAASCRHPQAIEKVYRIKDRPQEKPICIFISNLD 534

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLD---LLSTTDIHP--LSTANLKTACFRVPCG 122
            ++  A  + PL     +  +PG +  ++     L    +           +   RVP  
Sbjct: 535 QLRAAAPPISPLLWEFMENVYPGGVGCIIKKGEWLKKLGVGEGYSRVGTQDSIMIRVPDL 594

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLAI SAN SG++  T+   ++S  +  ++  ++  G S   + ST+VN
Sbjct: 595 TVLVHLIDMTGPLAITSANPSGEVDSTHHDMVIS-RLGHKLEGVLCDGESDEVVASTVVN 653

Query: 183 VQ--CEKKVRILRPGGLEIETLKRA 205
                E  + ILR G +    + + 
Sbjct: 654 CTRIDESGITILREGCIPASKVMQI 678


>gi|307543967|ref|YP_003896446.1| translation factor [Halomonas elongata DSM 2581]
 gi|307215991|emb|CBV41261.1| K07566 putative translation factor [Halomonas elongata DSM 2581]
          Length = 195

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 7/191 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +++  +++L  A   L  G  IA PTE V+GL  D  + +A+ RL  IK+R     +I  
Sbjct: 9   ITMLQASSLDTAVAALREGGVIAYPTEAVWGLGCDPDDTSALTRLLRIKRRDPAKGVILV 68

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            +D+          P          P   P T ++          L          RV  
Sbjct: 69  AADLDQFSPWLEGLPDERRAVLAE-PQAQPTTWLVP--DNGRAAELVRGEHDKVALRVSD 125

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +L   +G PL   SANR+G+ S  + + +       E+  ++DG +      STI
Sbjct: 126 HPLVGELCRAFGGPLVSTSANRAGEPSAMSAEEV-RRVFGDELDALLDGPLGGHTRPSTI 184

Query: 181 VNVQCEKKVRI 191
            ++   + +R 
Sbjct: 185 RDLATGRVLRA 195


>gi|239993915|ref|ZP_04714439.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonas macleodii ATCC
           27126]
          Length = 201

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 8/188 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +S  +        AG  I  PTE V G+  D  N  A+  L EIK+RP    +I   ++ 
Sbjct: 18  NSPEVDPVVAAFQAGSLIVYPTEAVMGIGCDPDNEAAVNALLEIKQRPVEKGVILIAANY 77

Query: 68  SMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           S +  + + + +       +F  WPGP T +L   S+  +    T        RV     
Sbjct: 78  SQLLPYVNDNAIRPDRRTDIFSSWPGPNTWLLPKSSSAPV--WLTGKHSKIAVRVTNHPV 135

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             +L    G PL   SAN +GQ   T  +     ++  +    ++G +      STI + 
Sbjct: 136 VVELCNKLGKPLVSTSANLTGQPPATTTEEA--KAVFADSVFYVEGEVGGATKPSTIRDG 193

Query: 184 QCEKKVRI 191
              + +R 
Sbjct: 194 DTAEVIRA 201


>gi|89092294|ref|ZP_01165248.1| hypothetical protein MED92_05763 [Oceanospirillum sp. MED92]
 gi|89083382|gb|EAR62600.1| hypothetical protein MED92_05763 [Oceanospirillum sp. MED92]
          Length = 191

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 4/193 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  ++  D   + ++   +  G  IA PTE V+GL  D  N  A+ +L +IK+RP    L
Sbjct: 1   MSSINNADWWHIHQSVRAIRQGGVIAYPTEAVWGLGCDPYNEDAVLKLLDIKRRPMHKGL 60

Query: 61  ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           +   +++S +                  WPGP T +L       I      +      RV
Sbjct: 61  VLVAANLSQIDFLLEDLSQDEYDKVTANWPGPFTWILPDKKNR-IPAWIKGDYSAVAVRV 119

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 + L E YG  +   SAN +      +   +  +   ++I  ++ G +      +
Sbjct: 120 SAHSSVRNLTEAYGSFIVSTSANPAAHEPARDSLRV-KTYFGEKIDYLLHGELGDSAQPT 178

Query: 179 TIVNVQCEKKVRI 191
            I +++ ++ VR 
Sbjct: 179 QIRDLKSDRLVRA 191


>gi|297822817|ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325130|gb|EFH55550.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 263

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 10/193 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 77  QEAIEAIKSDKVIAVPTDTLYGFACDACSLEAVNRIYEIKGRKLTSPLAICVGDVFDIKR 136

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            A+ + L   L     PGP+TLVL    ++ +       + T   RVP C F ++++   
Sbjct: 137 VATTNHLPHGLLDSLLPGPVTLVLHRGESSILEKSLNPGIGTIGIRVPDCEFIREVLRGS 196

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G  LA+ SAN SG  S   V       + +++ L++D     +  ES  + V  +++ + 
Sbjct: 197 GSVLALTSANLSGDRSSVCVND--FEKLWQDLQLLMD-----LKFES--LWVLSKQQWQS 247

Query: 192 LRPGGLEIETLKR 204
           LR    + +TLKR
Sbjct: 248 LRSICWKKKTLKR 260


>gi|166713746|ref|ZP_02244953.1| hypothetical protein Xoryp_20475 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 187

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S + +++
Sbjct: 7   LDNAVATLTQGGVIAYPTEAVWGLGCDPRREAAVLRLLEIKRRPVDKGVIVVTSSVDVLR 66

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D L+          WPGP T +L +  T       T        R+        L
Sbjct: 67  DWVDIDALAPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAHPVVAAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    +    L  ++   I  ++DG +  +   + I + +  +
Sbjct: 125 CAAWGAPLVSTSANLAGEPPARSHA-ALDPALLATIDGVVDGEVGALAQPTRIRDARSGQ 183

Query: 188 KVRI 191
            +R 
Sbjct: 184 ILRD 187


>gi|288924800|ref|ZP_06418737.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae D17]
 gi|315607819|ref|ZP_07882812.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae ATCC 33574]
 gi|288338587|gb|EFC76936.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae D17]
 gi|315250288|gb|EFU30284.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella buccae ATCC 33574]
          Length = 192

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV- 64
           +T    ++ A E +  G  I  PT+TV+G+  D+ NP A+ ++Y+IK+R     LIC V 
Sbjct: 1   MTIQEDIKNAVECMRKGGVILYPTDTVWGIGCDATNPEAVAKVYQIKQRDDSKALICLVD 60

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           SD  M K   ++  ++  L      G  P T++LD     ++ P   A   +   R+   
Sbjct: 61  SDARMQKYFRNIPSVAWELVDSTAEGGKPTTIILD--DAVNVAPNLIAEDGSLAVRITYE 118

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTI 180
            F+K+L       +   SAN SGQ +  N   I    +     +        K    S+I
Sbjct: 119 KFSKELCFRMQKAIVSTSANISGQPAAQNFCDIAPEVVEAVDYVCWSRRQEHKPHTPSSI 178

Query: 181 VNVQCEKKVRILR 193
           + +    +V I+R
Sbjct: 179 IKLGRNGEVTIIR 191


>gi|288941908|ref|YP_003444148.1| Sua5/YciO/YrdC/YwlC family protein [Allochromatium vinosum DSM 180]
 gi|288897280|gb|ADC63116.1| Sua5/YciO/YrdC/YwlC family protein [Allochromatium vinosum DSM 180]
          Length = 207

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E L  G  I  PT++ Y L       +A+ R+  I++    +       D+S
Sbjct: 14  PRLIRRAVEILLEGGVIVYPTDSSYALGCQIGEKSAMERIRRIRRLDDKHNFTLVCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D  +  + K   PG  T + +         L     K    RVP     + L
Sbjct: 74  EIASYAKIDDQAYRMLKSLTPGAYTFIHEATKQVP-RRLLHPKRKAIGLRVPDNEICRAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+   +             + +  ++ K + LIIDGG   +   +T+V++  + 
Sbjct: 133 LGELDQPILSTTLILPDHDEPLTDPYDMREALDKHVDLIIDGGFCGL-EPTTVVDMTADP 191

Query: 188 KVRILRPGG 196
              + R  G
Sbjct: 192 PALVRRGKG 200


>gi|124805452|ref|XP_001350444.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23496566|gb|AAN36124.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 556

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 12/203 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + +  +K  E ++    I IPTETVYGL  +S +  +++ ++ +K RP  +P+I HV +I
Sbjct: 13  NEDLRKKLKEHIEGDKLIGIPTETVYGLGGNSLSQRSLQNIFRMKNRPVSDPIISHVYNI 72

Query: 68  SMVKKHASVDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
                      +        L+K FWPGPL+++    +  +   + TA  +    R+P  
Sbjct: 73  YQAYDQLYHINIYEKYIIYILSKYFWPGPLSII--AKAKKEAPLILTAYTQFCAVRIPDN 130

Query: 123 -FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T+++I+    P+A PSAN+   IS TN  H+       E  LI D G   +G+EST++
Sbjct: 131 KITREIIKICNTPIAAPSANKFQHISPTNSLHVY-DEFKNEDLLIFDDGQCDVGIESTVL 189

Query: 182 NVQCEKKVRILRPGGLEIETLKR 204
            +    K RI        E LK 
Sbjct: 190 KIT---KYRINHEDKNTDEVLKE 209



 Score = 38.5 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 40/138 (28%)

Query: 223 PGMLKSHYAPRSQVRLRAIHVNP------------------------REALIRFGNVPIK 258
           PG+L +HY+P     L  I                            +  L+  G+  +K
Sbjct: 405 PGLLLTHYSPFVSTYLLDIISCKTIEKENKGELLETNNNVCKKINLNKCVLLDIGSSLLK 464

Query: 259 NIENAIISLN-----LSKTGKLKEAAFNLFNYMKIADDS----GASSIAFS-----SIPN 304
             +N +  +N     L    ++K      F +++ A+       A +I  S     S   
Sbjct: 465 YDKNFLKYINICYDSLEVNERIKYITKQFFLFLRQAERLAIENKADNILISIVNIKSCDE 524

Query: 305 HGLGIAINNRLERAAAPR 322
           + L  +I +R+ RAA+ +
Sbjct: 525 NYL--SIFDRIYRAASGK 540


>gi|329957163|ref|ZP_08297730.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056]
 gi|328523431|gb|EGF50530.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides clarus YIT 12056]
          Length = 204

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 9/199 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVS 65
            +   L++  + L+ G  I  PT+T+Y +        AI R+ ++K   P  N L     
Sbjct: 10  NNPADLQQVIDILNDGGIIIYPTDTMYAIGCHGLKERAIERICQLKNIDPKKNNLSIICY 69

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           D+S + ++A  D  +  L K   PG  T +L+    T   P    N K    R+P     
Sbjct: 70  DLSSISEYAKFDNNTFKLMKRNLPGAFTFILN---GTVRLPKIFRNRKEVGIRMPDNPII 126

Query: 125 KKLIETYGHPLAIPSANRS--GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++L      P+   +        I       ++       + L+IDGGI  I   STIVN
Sbjct: 127 QELARLLDAPIMTTTLPYDENEDIEYCTDPELIDEKFGNIVDLVIDGGIGGIEG-STIVN 185

Query: 183 VQCEKKVRILRPGGLEIET 201
                +  I+R G   ++ 
Sbjct: 186 CT-NGEAEIVRQGKGRLDE 203


>gi|188993332|ref|YP_001905342.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735092|emb|CAP53304.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           campestris]
          Length = 191

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S + ++
Sbjct: 10  DLDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVL 69

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +    +  L           WPGP T +L +  T       T +      R+        
Sbjct: 70  QDWIDIAALGSEQLTAVLAQWPGPHTWILPV--TAQAPRWVTGDHDGLAVRISAHPVVAA 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L + +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  
Sbjct: 128 LCKAWGAPLVSTSANLAGEPPARS-RAALDPALLARIDGVLDGEVGGLAQPTPIRDARTG 186

Query: 187 KKVRI 191
           + +R 
Sbjct: 187 QILRD 191


>gi|258648509|ref|ZP_05735978.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella tannerae ATCC 51259]
 gi|260851274|gb|EEX71143.1| Sua5/YciO/YrdC/YwlC family protein [Prevotella tannerae ATCC 51259]
          Length = 211

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 6/188 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R+A E L+ G  I  PT+T++G+  D+ NP A++R+Y+IK+R     LI  V   + 
Sbjct: 27  EDIRQAVEVLNRGGVILYPTDTIWGIGCDATNPEAVQRVYDIKRRIDSKALITLVDSEAK 86

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
           ++ +    P +      +   P T+V D +   ++ P   A   +   R+    F+++L 
Sbjct: 87  LQFYVRDVPNAAWDIIDYATRPTTIVYDTV--RNLAPNLLAEDGSVGIRITQEPFSRELC 144

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCE 186
             +   +   SAN SG+ S       +S  I + +  I     ++      S I+ +  +
Sbjct: 145 ARFRRAIVSTSANVSGEPSAACF-DAISDEIKEAVDYICTSRRNERKPASASAIIKLSFD 203

Query: 187 KKVRILRP 194
             V+I+R 
Sbjct: 204 GTVQIIRQ 211


>gi|166154358|ref|YP_001654476.1| hypothetical protein CTL0392 [Chlamydia trachomatis 434/Bu]
 gi|166155233|ref|YP_001653488.1| hypothetical protein CTLon_0388 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335611|ref|ZP_07223855.1| hypothetical protein CtraL_02230 [Chlamydia trachomatis L2tet1]
 gi|165930346|emb|CAP03832.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu]
 gi|165931221|emb|CAP06786.1| conserved hypothetical protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 281

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 16/200 (8%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E + AG   A PT+TVYGL V      A +RL+ +K R +   L  +VS +  ++ 
Sbjct: 4   QQIEESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEA 63

Query: 73  HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            A       S  + + F PGPLTL+         H       KT  FR+      +++I+
Sbjct: 64  VAQQSLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQ 116

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P    SAN SG  S  +   +      ++I +I   G   IGLEST+++   E+++
Sbjct: 117 KVG-PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID--PEERI 171

Query: 190 RILRPGGLEIETLKRAISVE 209
            + R G + I  ++  +   
Sbjct: 172 -VYREGAISIAEIETVLGAP 190


>gi|104779340|ref|YP_605838.1| hypothetical protein PSEEN0027 [Pseudomonas entomophila L48]
 gi|122401163|sp|Q1I2G9|RIMN_PSEE4 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|95108327|emb|CAK13021.1| conserved hypothetical protein; Sua5/YciO/YrdC/YwlC family protein
           [Pseudomonas entomophila L48]
          Length = 185

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSWRVQQAAREVKAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIAD 60

Query: 66  DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I          P          WPGP T ++       +    T    T   RV     
Sbjct: 61  NIRQFDFLFEDFPQDWIDRMSATWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPQ 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   S N +G+ +  +   +       E+ +++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSCNPAGRPAAKSRLRV-EQYFHNELDMVLGGALGGRKNPSLIRDLA 177

Query: 185 CEKKVRI 191
             + VR 
Sbjct: 178 TGEVVRP 184


>gi|167031107|ref|YP_001666338.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida GB-1]
 gi|212288215|sp|B0KF32|RIMN_PSEPG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|166857595|gb|ABY96002.1| SUA5/yciO/yrdC domain [Pseudomonas putida GB-1]
          Length = 185

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    +I    
Sbjct: 7   VQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILIADNIRQFD 66

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 P          WPGP T ++       +    T    T   RV      + +  
Sbjct: 67  FLFEDFPEDWIERMGSTWPGPNTWLVPHQD--LLPEWVTGKHDTVALRVTDHPQVRELCA 124

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   S N  G+ +      +       ++ L++ G +      S I N+   + VR
Sbjct: 125 LVGPLISTSCNPGGRPAAKTRLRV-EQYFHGQLDLVLGGALGGRKNPSVIRNLATGEVVR 183

Query: 191 I 191
            
Sbjct: 184 P 184


>gi|149640125|ref|XP_001515015.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 341

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 9/216 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
             +++LR   + LD G    +PT+TVY LA   ++  AI ++Y+IK RP   P+   +S+
Sbjct: 127 HRTSSLRIIAKLLDDGGVCGVPTDTVYALAASCKHSEAIEKIYKIKDRPQDKPICIFISN 186

Query: 67  ISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLS-----TTDIHPLSTANLKTACFRVP 120
           +  ++  +    PL        +PG +  ++                      +   RVP
Sbjct: 187 LDQLRAANPPFTPLLWDFMARVYPGSIGCIVKKGEWVKKLGVGAGFDRVGTKDSIMIRVP 246

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                  +     PLAI SAN SG+   T+ + ++S  +  ++  ++  G S   L ST+
Sbjct: 247 DQTVMVHLVEMTGPLAITSANPSGESDSTHHEMVIS-RLGHKLEGVLCDGESDEVLASTV 305

Query: 181 VNVQ--CEKKVRILRPGGLEIETLKRAISVELEYCV 214
           VN     E  + ILR G +    + +         V
Sbjct: 306 VNCLRIEEGTITILREGCVSAAKVMQIFEQAKSRAV 341


>gi|315223600|ref|ZP_07865454.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287]
 gi|314946381|gb|EFS98376.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga ochracea F0287]
          Length = 185

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 6/180 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L AG  I  PT+TV+GL  D+ NP ++ ++++IK+R     LI  VSD  M++ + + 
Sbjct: 9   EILKAGKIILYPTDTVWGLGCDATNPESVAKIFQIKQRSESKSLIILVSDTEMLQHYVTD 68

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
            P  +         P T++        +     A   T   RV    F +++I  +G P+
Sbjct: 69  IPPKVLTYLQTLQEPTTIIYSHP--LHLAKNVIAADNTVAIRVVQDVFCQQMIADFGKPI 126

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIID--GGISKIGLESTIVNVQCEKKVRILR 193
              SAN SG+ +      +++  I  +   ++      ++I   S ++    + +++ILR
Sbjct: 127 VSTSANISGEPTPL-YYQLINPQIIAQCDYVVPYRQDDTQIKNPSRLIRFDTDGEIQILR 185


>gi|320539230|ref|ZP_08038901.1| putative ribosome maturation factor [Serratia symbiotica str.
           Tucson]
 gi|320030868|gb|EFW12876.1| putative ribosome maturation factor [Serratia symbiotica str.
           Tucson]
          Length = 189

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+   ++ L    + L     IA PTE V+GL  D  +  A+  L  +K+R     LI  
Sbjct: 1   MNSEPTSTLASIIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNTLLSLKQRSWEKGLILI 60

Query: 64  VSDISMVKKHASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +D   +  + +   LS    A +F  WPGP+T  +     T      T    +   RV 
Sbjct: 61  AADYQQLIPYINDSALSEPQRAAIFASWPGPVTWAIPARPET--PRFLTGRFNSLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++L   YG PL   SAN S +    N   + +       P ++ G +      S 
Sbjct: 119 AHPLVQQLCRQYGKPLVSTSANFSEREPCRNTNEV-TQQFGTAFP-VLVGKVGGYLNPSE 176

Query: 180 IVNVQCEKKVR 190
           I +    +++R
Sbjct: 177 IRDALSGEQIR 187


>gi|606216|gb|AAA58079.1| ORF_f176 [Escherichia coli str. K-12 substr. MG1655]
          Length = 176

 Score =  147 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 67/171 (39%), Gaps = 8/171 (4%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV---DPLS 80
            IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   +K +        + 
Sbjct: 8   VIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQ 67

Query: 81  LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPS 139
                  WPGP+T V    +TT      T    +   RV        L + YG PL   S
Sbjct: 68  RETIFSRWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTS 125

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           AN SG      V  +  +      P ++ G        S I +    +  R
Sbjct: 126 ANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALTGELFR 174


>gi|134099760|ref|YP_001105421.1| SUA5/YciO/YrdC/YwlC family protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291005649|ref|ZP_06563622.1| SUA5/YciO/YrdC/YwlC family protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133912383|emb|CAM02496.1| SUA5/YciO/YrdC/YwlC family protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 206

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 67/195 (34%), Gaps = 4/195 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+ +  + LD    I  PT++ + L     N   I R+  I+     +       + + 
Sbjct: 15  RAIGQVVDILDRDGVIVYPTDSCFALGCRLGNKEGIDRIRSIRDLDERHHFTLVCQNFAQ 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128
           + +   ++       K   PG  T +L          L     KT   R+P     + L+
Sbjct: 75  LGQFVHINNAVFRAVKASTPGSYTFILPATREVP-RRLMHPKKKTVGIRIPDHVAAQALL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G PL   +     Q         +   +   +  ++D G   +   +T+++   ++ 
Sbjct: 134 SEVGEPLVSSTLLLPDQEDPLTQGWEIKELLDHAVDAVVDSGDCGV-EPTTVIDFSGDEP 192

Query: 189 VRILRPGGLEIETLK 203
             I+R G  +    +
Sbjct: 193 -EIVRRGAGDTSRFE 206


>gi|47222938|emb|CAF99094.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 655

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 7/182 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++L+     L+ G    IPT+TVY LA   +NP AI ++Y IK RPA  P+   +S++ 
Sbjct: 464 TSSLQTIAACLEEGGVCGIPTDTVYALAASCKNPQAIEKIYNIKDRPAEKPVCICISNVE 523

Query: 69  MV-KKHASVDPLSLHLAKLFWPGPLTLVL---DLLSTTDIHP--LSTANLKTACFRVPCG 122
            +        PL     +  +PG ++ ++   D L    + P         +   RVP  
Sbjct: 524 QLVAAKPPFSPLLWEFMRNVYPGGISCIISKGDWLLRLGVGPAYDRVGTSDSIMIRVPDH 583

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLAI SAN SG+   T+   ++S  +  +I  ++  G S   + ST+VN
Sbjct: 584 TVTSHLCDITGPLAITSANPSGEADSTHHDMVIS-RLGHKIQGVLCDGHSNEVVASTVVN 642

Query: 183 VQ 184
             
Sbjct: 643 CL 644


>gi|126174907|ref|YP_001051056.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS155]
 gi|153001236|ref|YP_001366917.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185]
 gi|160875910|ref|YP_001555226.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195]
 gi|217972843|ref|YP_002357594.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223]
 gi|304411911|ref|ZP_07393522.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183]
 gi|307303321|ref|ZP_07583076.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175]
 gi|125998112|gb|ABN62187.1| translation factor SUA5 [Shewanella baltica OS155]
 gi|151365854|gb|ABS08854.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS185]
 gi|160861432|gb|ABX49966.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS195]
 gi|217497978|gb|ACK46171.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS223]
 gi|304349771|gb|EFM14178.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS183]
 gi|306913681|gb|EFN44103.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica BA175]
 gi|315268101|gb|ADT94954.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella baltica OS678]
          Length = 206

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  I  PT++ Y L        A+ R+  I++    +       D+S
Sbjct: 14  TRLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIENDHNFSLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD  +  + K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELATYAKVDNQAYRILKSCTPGPYTFIFKATKEVP-RRLQNDKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S          +    +   +  ++ +II GG       +T++++  + 
Sbjct: 133 LEALDAPLMSTSLVMPNAEFAESDPEQIRDLLEHQVDVIIHGGYLGE-KPTTVIDMSEDG 191

Query: 188 KVRILRPGGLEI 199
              ILR G  +I
Sbjct: 192 -AEILREGAGDI 202


>gi|69249628|ref|ZP_00605026.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO]
 gi|68194107|gb|EAN08647.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO]
          Length = 120

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 2/101 (1%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+     D   L++A E L  G  +A PTETVYGL  ++  P A+++++ +K RP  NPL
Sbjct: 1   METKR-YDETELQEAAEALKEGELVAFPTETVYGLGANALLPNAVKKVFSVKGRPQDNPL 59

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLS 100
           I HV+    VK++     P +  + K FWPGPLTL+  +  
Sbjct: 60  IVHVASFEQVKEYVDNFHPAAEKIVKNFWPGPLTLIFKIKK 100


>gi|226942190|ref|YP_002797263.1| RNA binding yrdC protein [Azotobacter vinelandii DJ]
 gi|226717117|gb|ACO76288.1| RNA binding yrdC protein [Azotobacter vinelandii DJ]
          Length = 185

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+    +  G  IA PTE V+GL  D  N  A+RRL  +K+RP    LI   +DI    
Sbjct: 7   VRQVARAVRRGGVIAYPTEAVWGLGCDPWNADAVRRLLALKRRPQDKGLILVAADIGQFG 66

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 P +        WPGP T ++       +    T    +   RV      + +  
Sbjct: 67  FLLDDLPSAWRERLAGTWPGPNTWLVPHRG--RLPAWITGRHASVALRVSDHPLVRALCR 124

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN +G+ +  +   +      + +  ++ G +      S I ++   + +R
Sbjct: 125 LTGPLVSTSANPAGRPAARSRLRV-EQYFPRRLDAVLGGALGGRRNPSLIRDLASGQVIR 183

Query: 191 I 191
            
Sbjct: 184 P 184


>gi|297626391|ref|YP_003688154.1| Sua5_yciO_yrdC [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922156|emb|CBL56724.1| Sua5_yciO_yrdC [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 205

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +  + L  G  IA PT++ + L     N   I  +  I+     + L   VS+ +
Sbjct: 14  ARSIHQVADLLREGAVIAYPTDSGFALGTLFGNKEGIDTMRRIRDLDERHHLSVVVSEFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            + ++  +D       K   PGP T +L   +T ++        KT   RVP       L
Sbjct: 74  QLGRYVDMDNREFRAIKASTPGPFTFIL--RATREVPRSMQHPNKTVGVRVPDHVTALAL 131

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++    PL   +    GQ    +    +  ++  +I  ++D G     + +T+V++  E+
Sbjct: 132 LDELDEPLVSSTLILPGQEEPMSEGWQIKEALDNDIAAVLDSGDVGH-VPTTVVDLTGEE 190

Query: 188 KVRILRPGGLEI 199
            V + R GG   
Sbjct: 191 PVVVRRGGGKTE 202


>gi|313792079|gb|EFS40180.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL110PA1]
 gi|315077954|gb|EFT50005.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL053PA2]
 gi|327453202|gb|EGE99856.1| Sua5/YciO/YrdC/YwlC family protein [Propionibacterium acnes
           HL092PA1]
          Length = 222

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L +  + L  G  IA PT+T Y       N  A+ R+ ++++    +     +S  +
Sbjct: 30  QRSLNQIVDILHHGGLIAYPTDTGYAFGARLGNKDAVDRIRKLRQLSDKHHFTLVMSQFA 89

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGF-TKK 126
            V ++  +D           PG  T +L+  +T D+  +      KT   R P       
Sbjct: 90  QVGQYVQMDNWVFRAVSAAVPGRYTFILN--ATRDVPKVMLHPRKKTVGVRAPEHVTALA 147

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+E    P+   +    GQ +       +   I  ++  ++D G   +   +T+V+    
Sbjct: 148 LLEALNEPIVSSTLILPGQDTPMVDGWQVQDEIGDQLDAVLDSGDCGV-EPTTVVDFTSG 206

Query: 187 KKVRILRPGG 196
           + V   R  G
Sbjct: 207 EAVVTRRGAG 216


>gi|225851215|ref|YP_002731449.1| Sua5/YciO/YrdC/YwlC family protein [Persephonella marina EX-H1]
 gi|225646672|gb|ACO04858.1| Sua5/YciO/YrdC/YwlC family protein [Persephonella marina EX-H1]
          Length = 203

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 7/204 (3%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I  S  + +A E+L  G  +  PT+T+YG+  D+ N  A+ ++Y +K R    P+I  +
Sbjct: 3   DIKVSKNIEEAAEYLKKGRIVIAPTDTLYGILADALNKDAVEKVYRLKGRTPTKPVIVLI 62

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACFRVPC-G 122
             +  +         S    KL     +T+V+DL                +  FR+P   
Sbjct: 63  PQLEFLDLFCVKP--SEREKKLLIHRGITVVIDLQDDCKERFFYLHRGKGSLGFRIPDSD 120

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              K++E    PL  PSAN  G+    ++   +S     ++ L IDGG  K    ST+V 
Sbjct: 121 QLIKVMERIERPLIAPSANPEGKKPAEDIDQAVS-YFGSKVDLYIDGGTVKGKEPSTVVK 179

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
           +  +  + ++R G ++ + +KR +
Sbjct: 180 I--DNGITVIREGSIKKDEIKRLL 201


>gi|260905265|ref|ZP_05913587.1| translation factor SUA5 [Brevibacterium linens BL2]
          Length = 206

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 8/206 (3%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +++I   N     + KA + L  G  IA PT++ Y L     N   I R+  I++  + +
Sbjct: 4   VLNIHPENPQNRMIEKAVQTLRDGGLIAYPTDSGYALGCALDNKAGIERITRIRQLDSKH 63

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
                  D + + +   VD     + K   PGP T ++          +  A   +   R
Sbjct: 64  HFTLMCRDFAQLGQFVIVDNSDFRVIKSMTPGPYTFIMKATKEVP-RRMMHAKKHSVGAR 122

Query: 119 VPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P       L+E  G P+   +    G          +   I  E+  +I+ G+    + 
Sbjct: 123 IPQNVTALALVEAMGEPILSSTLLLPGAEDPLTQADEVVEQIGHELDAVIESGV-PGNVP 181

Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203
           +++++    + V + R G  ++   +
Sbjct: 182 TSVIDFTGREPV-VARVGAGDVSRFE 206


>gi|34541562|ref|NP_906041.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83]
 gi|34397879|gb|AAQ66940.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83]
          Length = 191

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 5/184 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +KA E +  G  I  PT+T++G+  D+ N  A++R+Y +K+R     ++  +   + ++ 
Sbjct: 11  KKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVQRIYRLKERADSKSMLVLIDSEAKLQG 70

Query: 73  HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
               V  L+  L +     PLT++        + P   A+  +   R+    F+ +L   
Sbjct: 71  LMDEVPELAWDLIE-LTTKPLTIIYPQAK--GVAPALIASDGSLGIRLTRETFSAELCRL 127

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SGQ S      I  + +     ++        G  S+I+ +    +V 
Sbjct: 128 MRVPIVSTSANISGQPSARTFGEIAPAILDGVDYIVECRREEPAGQASSIIRLGTRGEVE 187

Query: 191 ILRP 194
           ++R 
Sbjct: 188 VIRQ 191


>gi|121606166|ref|YP_983495.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120595135|gb|ABM38574.1| Sua5/YciO/YrdC/YwlC family protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 211

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L +A E +  G   A+PT++ Y L     +  A   L  I+     + L     D+S
Sbjct: 14  ARLLAQAVELIQRGGIAAVPTDSSYALVCQLDDKAASDNLRRIRGVDGKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD     L K   PGP T +L+         LS  + KT   RVP   T + L
Sbjct: 74  ELANYARVDNKQFRLIKAATPGPYTFILEASKEVP-RRLSHPSRKTIGLRVPDHKTLQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC-- 185
           +E +G PL   +    G+    +    ++  +  E+  IID G       +T+V++    
Sbjct: 133 LELHGGPLLATTLIPRGETESISDPQDITGPLEHELAAIIDAGAC-HKEPTTVVDLTTMA 191

Query: 186 -EKKVRILRPGGLEIETL 202
                 I+R G  E+  L
Sbjct: 192 DGGDPVIIRQGRGELAAL 209


>gi|307186184|gb|EFN71890.1| YrdC domain-containing protein, mitochondrial [Camponotus
           floridanus]
          Length = 248

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 10/187 (5%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A + L  G  IAIPT+T+YGLA  + NP A++RLYEIK+R    PL   +S++  +    
Sbjct: 41  AAQLLQQGKIIAIPTDTIYGLAGVAVNPLAVQRLYEIKRRDGSKPLAICLSNVKEIGTWG 100

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
            +D +   + +   PGP T+ L    T+ +        +T   RVP     + +     P
Sbjct: 101 VLDDVPSGMLECLLPGPCTICLRR--TSALPKSFNPGQETVGIRVPDNKFVRSVAKIVGP 158

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG------GISKIGLESTIVNVQCEKK 188
           LA+ SAN S + S          ++  ++  +          +    + ST+V++     
Sbjct: 159 LALTSANISSEPSSLYPDE--FRALWPKLDGVFHETSNSNKRLESRRVGSTVVDLSTPGY 216

Query: 189 VRILRPG 195
            RI+R G
Sbjct: 217 YRIVRHG 223


>gi|332283421|ref|YP_004415332.1| putative translation factor [Pusillimonas sp. T7-7]
 gi|330427374|gb|AEC18708.1| putative translation factor [Pusillimonas sp. T7-7]
          Length = 208

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L++A + L  G  +A+PT++ Y +     +  A   L  ++     + L     D++
Sbjct: 14  ARLLKQAGQLLADGGLVAVPTDSSYAVVARLDDRPAADALRRLRGLDERHHLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD       K+  PGP T +L+         +S  + KT   RVP    T  L
Sbjct: 74  EIGHFAKVDNRQYRFLKMATPGPWTFILEATREVP-RRVSHPSRKTIGIRVPDHKVTLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           IE  G PL   +     +    N    +      ++  +IDGG   +   +T++++    
Sbjct: 133 IEAAGTPLMSTTLIPEDEEDPMNDGQAIYDRYANQLAAVIDGGACVLA-PTTVLDLTGAS 191

Query: 188 KVRILRPGGLEIETL 202
              ++R G  ++  L
Sbjct: 192 P-EVIRRGQGDLSAL 205


>gi|21233184|ref|NP_639101.1| hypothetical protein XCC3756 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770124|ref|YP_244886.1| hypothetical protein XC_3826 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|81303924|sp|Q4UQ07|RIMN_XANC8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|81792557|sp|Q8P4F2|RIMN_XANCP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288259|sp|B0RWR5|RIMN_XANCB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|21115034|gb|AAM43013.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575456|gb|AAY50866.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 187

 Score =  147 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S + ++
Sbjct: 6   DLDAAVATLARGGVIAYPTEAVWGLGCDPRQEDAVLRLLEIKRRPVDKGVIVVASGLDVL 65

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +    +  L           WPGP T +L +  T       T +      R+        
Sbjct: 66  QDWIDIAALGSEQLTAVLAQWPGPHTWILPV--TAQAPRWVTGDHDGLAVRISAHPVVAA 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L + +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  
Sbjct: 124 LCKAWGAPLVSTSANLAGEPPARS-RAALDPALLARIDGVLDGEVGGLAQPTPIRDARTG 182

Query: 187 KKVRI 191
           + +R 
Sbjct: 183 QILRD 187


>gi|225849196|ref|YP_002729360.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643744|gb|ACN98794.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 201

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + I  S  L  A  ++  G  +   T+T+YG+  D+ N  A+ ++Y+IK RP   P I  
Sbjct: 9   IHIKISKNLFDAIPYIKEGKLVVAKTDTIYGILADALNKEAVEKIYKIKGRPEDKPFIIL 68

Query: 64  VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +     +KK     DP    +  +     +T++ D+   T           +  FR+P  
Sbjct: 69  IPSSHDLKKFNVKPDPQGEKILNI---KGITVIFDIEDPTGEFYYLHRGKNSLAFRIPDD 125

Query: 123 FT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                 ++  G P+  PSAN S      +++  +       I L ID G  +  + STIV
Sbjct: 126 PVFLSFLKELGRPVVAPSANPSDLQPAEDIEKAI-EYFKDSIDLYIDSGKVEKNVPSTIV 184

Query: 182 NVQCEKKVRILRPG 195
            V+   K++++R G
Sbjct: 185 KVE-NGKIKVIREG 197


>gi|71908079|ref|YP_285666.1| Sua5/YciO/YrdC/YwlC [Dechloromonas aromatica RCB]
 gi|71847700|gb|AAZ47196.1| Sua5/YciO/YrdC/YwlC [Dechloromonas aromatica RCB]
          Length = 208

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L +A EF+  G  +A+PT++ Y L     +  A+ ++  I++    + L   V D+S
Sbjct: 14  QRLLAQAAEFIRNGAIVALPTDSCYALGCHLGDKEALDKIRLIRQMDDRHHLTLMVRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +   A VD     L K   PG  T +L+         +     KT   RVP       L
Sbjct: 74  EIAHFARVDNAQYRLLKAATPGSYTFILEGSKELP-RRVMHPKRKTIGLRVPDHPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   +    G          +   +  ++ LI+D G       +T++++    
Sbjct: 133 LEELNEPLLTTTLQLPGDEFPLTEGWEIQDRLEDQLELILDAGPCGT-EPTTVIDLTGSA 191

Query: 188 KVRILRPGGLEIE 200
              ++R G   +E
Sbjct: 192 P-ELIRAGRGPLE 203


>gi|313617107|gb|EFR89657.1| Sua5/YciO/YrdC/YwlC family protein [Listeria innocua FSL S4-378]
          Length = 151

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%)

Query: 191 ILRPGGLEIETLKRAISVEL--EYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPRE- 247
           ILRPGG+ IE +++ I           ET  P++PGM  +HYAP++ V L        + 
Sbjct: 2   ILRPGGITIEQIEQVIGTVDLSTNSTTETEKPKAPGMKYTHYAPKAPVYLVEGSSQFWQS 61

Query: 248 -------ALIRFGNVPIKNIENAII-SLNLSKTGKLK---EAAFNLFNYMKIADDSGASS 296
                  A  + G +  K + + +  S  +  TG +K   E A +L+  ++  D +    
Sbjct: 62  EINKVEIAGKKLGILATKELTSKLATSAVIQSTGSIKAMGEIATSLYKGLRAFDHADVDI 121

Query: 297 IAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           I     P   LG AI NRLE+AA  R  S+
Sbjct: 122 IFAEVYPETELGAAIMNRLEKAAGNRRISE 151


>gi|226355747|ref|YP_002785487.1| translation factor (SUA5) [Deinococcus deserti VCD115]
 gi|226317737|gb|ACO45733.1| putative translation factor (SUA5) [Deinococcus deserti VCD115]
          Length = 214

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 10/198 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+  A   L  G  +A P+ETV+GLA   ++P A+ RLY +K R A  P+    + +  
Sbjct: 18  TAVHNAAAALLRGAVVAYPSETVWGLAAHPQHPQAVERLYALKGRAADKPVQVSCAGVDE 77

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
              +A   P    LA   WPGPLTLV    +     P   A       RVP       L+
Sbjct: 78  ALHYAVPSPALSALAP-LWPGPLTLV---TAARPECPAYLAPHGQVGLRVPDHPVALALL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G  LA  S NRSG  +    +  ++S +   +    DGG    G+ ST+V +     
Sbjct: 134 QLSGGALATTSCNRSGLPAARTWEEAVTSGLGDLVLP--DGGHPAAGIASTVVLLPAG-- 189

Query: 189 VRILRPGGLEIETLKRAI 206
             ++R G +   TL++ +
Sbjct: 190 -EVVREGAVSAVTLRQLL 206


>gi|330957382|gb|EGH57642.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 185

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + VR 
Sbjct: 178 TGQVVRA 184


>gi|285019625|ref|YP_003377336.1| translation factor (sua5) protein [Xanthomonas albilineans GPE
           PC73]
 gi|283474843|emb|CBA17342.1| putative translation factor (sua5) protein [Xanthomonas
           albilineans]
          Length = 186

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 7/185 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +A   L  G  IA PTE V+GL  D  +  A+ RL  IK+RP    LI   +++  +
Sbjct: 5   SLSQAVTALRQGGIIAYPTEAVWGLGCDPYDAAAVNRLLRIKQRPVEKGLIVVAAELDAL 64

Query: 71  KKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                +  L           WPGP T +L   +T    P  T        R+        
Sbjct: 65  HPLLDLSALPPERLAAVLASWPGPHTWILP--ATAQAPPWITGTHNGIAVRISAHPLVTA 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +   L   SANR G+      +  L   +  E+  ++ G    +   + I +    
Sbjct: 123 LCRHWAGALVSTSANRGGEPPARQ-REELDPQLLAELDGLLHGETGGLAQPTPIRDAISG 181

Query: 187 KKVRI 191
           + +R 
Sbjct: 182 EILRA 186


>gi|188995759|ref|YP_001930011.1| hypothetical protein PGN_1895 [Porphyromonas gingivalis ATCC 33277]
 gi|188595439|dbj|BAG34414.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 191

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 5/184 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +KA E +  G  I  PT+T++G+  D+ N  A+RR+Y +K+R     ++  +   + ++ 
Sbjct: 11  KKAAEVMRKGGIILYPTDTIWGIGCDATNEEAVRRIYRLKERADSKSMLVLIDSEAKLQG 70

Query: 73  HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
               V  L+  L +     PLT++        + P   A+  +   R+    F+ +L   
Sbjct: 71  LMDEVPELAWDLIE-LTTKPLTIIYPQAK--GVVPALIASDGSLGIRLTRETFSAELCRL 127

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              P+   SAN SGQ S      I  + +     ++        G  S+I+ +    +V 
Sbjct: 128 MRVPIVSTSANISGQPSARTFGEIAPAILDGVDYIVECRREEPAGQASSIIRLGTRGEVE 187

Query: 191 ILRP 194
           ++R 
Sbjct: 188 VIRQ 191


>gi|238898788|ref|YP_002924470.1| predicted ribosome maturation factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466548|gb|ACQ68322.1| predicted ribosome maturation factor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 189

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M I ++       + L     IA PTE+V+GL  D  +  A+  L  +K+RP    LI  
Sbjct: 1   MQIKNNPTFASVLKALKKEQVIAYPTESVFGLGCDPDSQKAVNNLLLLKQRPQKKGLILI 60

Query: 64  VSDISMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +    ++ + + + + +    K+F  WPG LT V     +       +    +   RV 
Sbjct: 61  AASYQQLQPYINDEQVSAEQREKIFTSWPGHLTWVFPT--SIQTPFWLSGEFNSLAVRVS 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                ++L   +G PL   SAN +GQ      + ++      ++  ++ G +      S 
Sbjct: 119 AHPLVRQLCSCFGKPLVSSSANMTGQTPCRTSREVVL-QFGHQL-SVLSGNVGGHMKPSE 176

Query: 180 IVNVQCEKKVRI 191
           I +   ++ +R 
Sbjct: 177 IRDALTDRLIRS 188


>gi|120598424|ref|YP_962998.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella sp. W3-18-1]
 gi|146293497|ref|YP_001183921.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens CN-32]
 gi|120558517|gb|ABM24444.1| translation factor SUA5 [Shewanella sp. W3-18-1]
 gi|145565187|gb|ABP76122.1| translation factor SUA5 [Shewanella putrefaciens CN-32]
 gi|319426802|gb|ADV54876.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella putrefaciens 200]
          Length = 206

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +A   L AG  I  PT++ Y L        A+ R+  I++    +       D+S
Sbjct: 14  ARLISQAVAALKAGGVIVYPTDSGYALGCLIGEKDAMTRMARIRQIENDHNFSLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +  +A VD  +  + K   PGP T +           L     KT   RVP       L
Sbjct: 74  ELATYAKVDNQAYRILKSCTPGPYTFIFKATKEVP-RRLQNDKKKTIGIRVPDNVIALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    PL   S          +    +   +  ++ +II GG       +T++++  + 
Sbjct: 133 LEALDAPLMSTSLVMPNAEFAESDPEQIRDLLEHQVDVIIHGGYLGE-KPTTVIDMSEDG 191

Query: 188 KVRILRPGGLEI 199
              ILR G  +I
Sbjct: 192 -AEILREGAGDI 202


>gi|317404846|gb|EFV85219.1| translation factor [Achromobacter xylosoxidans C54]
          Length = 208

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A ++L+ G  +A+PT++ Y +     +  A   L  ++     + L     D++
Sbjct: 14  PRLLKQAAQWLNDGGLVAVPTDSSYAVVARLDDKNAADGLRRLRGLDERHHLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP T +L+         +S  + KT   RVP       L
Sbjct: 74  EIGHFARVDNRQYRLLKAATPGPWTFILEATKEVP-RRVSHPSRKTIGIRVPDHAVMLGL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +     +    N    +      E+  IID G       +T++++   +
Sbjct: 133 LEQMGAPLLSTTLIPKDETEALNDAEDIRERYAHELAAIIDAGACPHS-PTTVIDLTGAE 191

Query: 188 KVRILRPGGLEIETL 202
            V ++R G  +  TL
Sbjct: 192 PV-VVRVGRGDPATL 205


>gi|311107775|ref|YP_003980628.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter xylosoxidans A8]
 gi|310762464|gb|ADP17913.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter xylosoxidans A8]
          Length = 208

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A ++L  G  +A+PT++ Y +     +  A   L  ++     + L     D++
Sbjct: 14  PRLLKQAAQWLADGGLVAVPTDSSYAVVARLDDKNAADGLRRLRGLDERHHLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP T +L+         +S  + KT   RVP       L
Sbjct: 74  EIGHFARVDNRQYRLLKAATPGPWTFILEATKEVP-RRVSHPSRKTIGIRVPDHAVMLGL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +     +    N    +      ++  IID G       +T++++  E+
Sbjct: 133 LEQVGAPLLSTTLIPKDEAEALNDAEEIRERYDHDLAAIIDAGACPQS-PTTVIDLTSEE 191

Query: 188 KVRILRPGGLEIETL 202
            V ++R G  +  TL
Sbjct: 192 PV-VVRVGRGDPATL 205


>gi|229587599|ref|YP_002869718.1| hypothetical protein PFLU0021 [Pseudomonas fluorescens SBW25]
 gi|229359465|emb|CAY46306.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 185

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 68/187 (36%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +     L  A E + AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    
Sbjct: 2   VNRWRVLETARE-IRAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD 60

Query: 66  DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I          P          WPGP T ++       +    T    T   RV     
Sbjct: 61  NIRQFDFLFEDFPQDWIDRMASTWPGPNTWLVPHQG--LLPEWVTGVHDTVAVRVTDHPL 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + + +   PL   SAN  G+ +      +       ++ L++ G +      S I ++ 
Sbjct: 119 VRDLCSLVGPLISTSANPQGRPAARTRIRV-EQYFRGQVDLVLGGALGGRKNPSLIRDLV 177

Query: 185 CEKKVRI 191
             + VR 
Sbjct: 178 TGEVVRP 184


>gi|325913835|ref|ZP_08176194.1| translation factor SUA5 [Xanthomonas vesicatoria ATCC 35937]
 gi|325539910|gb|EGD11547.1| translation factor SUA5 [Xanthomonas vesicatoria ATCC 35937]
          Length = 187

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 7/185 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L  A   L  G  IA PTE V+GL  D    +A+ RL EIK+RP    +I   S I ++
Sbjct: 6   SLDSAVATLRKGGVIAYPTEAVWGLGCDPAQESAVLRLLEIKRRPVDKGVIVVASGIEVL 65

Query: 71  KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           +    +D   P         WPGP T +L +  T+      T        R+        
Sbjct: 66  RGWVDIDALEPARRDEVLASWPGPHTWILPV--TSRAPRWVTGTHDGLAVRISAHPLVVA 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +G PL   SAN +G+    + +  L  ++   I  ++ G +  +   + I + +  
Sbjct: 124 LCAAWGAPLVSTSANLAGEPPARS-REALDPALLATIDGVLAGDVGGLAQPTPIRDARTG 182

Query: 187 KKVRI 191
           + +R 
Sbjct: 183 QSLRD 187


>gi|289667887|ref|ZP_06488962.1| Sua5/YciO/YrdC family protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 187

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I     + +++
Sbjct: 7   LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVMRLLEIKRRPVYKGVIVVAPSVDVLR 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
               +D   P         WPGP T +L +  T       T        R+        L
Sbjct: 67  DWVDIDALEPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISTHPVVAAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  +
Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALDPALLATIDGVVDGEVGTLAQPTQIRDARSGQ 183

Query: 188 KVRI 191
            +R 
Sbjct: 184 ILRD 187


>gi|293606645|ref|ZP_06689000.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814929|gb|EFF74055.1| Sua5/YciO/YrdC/YwlC family protein [Achromobacter piechaudii ATCC
           43553]
          Length = 208

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A ++L+ G  +A+PT++ Y +     +  A   L  ++     + L     D++
Sbjct: 14  PRLLKQAAQWLNDGGLLAVPTDSSYAVVARLDDKDAADGLRRLRGLDERHHLTLLCRDLA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +   A VD     L K   PGP T +L+         +S  + KT   RVP       L
Sbjct: 74  EIGHFARVDNKQYRLLKAATPGPWTFILEATKEVP-RRVSHPSRKTIGIRVPDHAVMLGL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +     +    N    +      ++  IID G       +T++++  + 
Sbjct: 133 LEQVGAPLLSTTLIPKNETEALNDAEAIRERYDHDLAAIIDAGACPQS-PTTVIDLTSDD 191

Query: 188 KVRILRPGGLEIETL 202
            V ++R G  +  TL
Sbjct: 192 PV-VVRVGRGDPATL 205


>gi|222874698|gb|EEF11829.1| predicted protein [Populus trichocarpa]
          Length = 302

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  + +A E L  G  I  PT++ Y L     +  A+ R+ +I++ P  +      SD+S
Sbjct: 148 SRLINQAVEILRQGGVIVYPTDSGYALGCMIGDKHAMDRIVKIRQLPEGHNFTLVCSDLS 207

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  ++ V+     L K   PG  T +L          L T+  KT   RVP       L
Sbjct: 208 ELSTYSVVNNSVYRLIKNNTPGRYTFILSATKELP-RRLMTSKRKTIGIRVPDNQIALDL 266

Query: 128 IETYGHPLAIPSANRSGQISIT-NVKHILSSSICKE 162
           +++ G P+   S    G+   T +    +   +  +
Sbjct: 267 LKSLGEPILSCSLMLPGEEYTTQSDPEEIRDRLEHQ 302


>gi|289209438|ref|YP_003461504.1| SUA5/yciO/yrdC domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945069|gb|ADC72768.1| SUA5/yciO/yrdC domain protein [Thioalkalivibrio sp. K90mix]
          Length = 197

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 5/182 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +    + +  G  +A PTE V+GL     +P  I R+ EIK RPA   LI     +  +
Sbjct: 12  EIEPVAQCVRDGGVVAYPTEAVFGLGCRPDDPRTIDRILEIKGRPATKGLIVVTDRLDRL 71

Query: 71  KKHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLI 128
               +  P          WPGP T +L +  T    PL      +   RV     T+ L 
Sbjct: 72  APWLAPLPAERRAEIDASWPGPTTWLLPV--TDACPPLLRGEHDSLAVRVTAHPETRALC 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G PL   SANR+G I        +++ +   I  I+          STI + +    
Sbjct: 130 AAAGSPLVSTSANRAG-IEPCRTWDCVNTQLGAGIDAILQAECGGRTAPSTIRDARTGAW 188

Query: 189 VR 190
           +R
Sbjct: 189 LR 190


>gi|304413778|ref|ZP_07395222.1| dsRNA-binding putative translation factor [Candidatus Regiella
           insecticola LSR1]
 gi|304283869|gb|EFL92263.1| dsRNA-binding putative translation factor [Candidatus Regiella
           insecticola LSR1]
          Length = 196

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 3/179 (1%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++ + + L  G  I  PT++ Y L        A+ R+  I++    N       D+S + 
Sbjct: 17  IKLSVDVLSKGGVIIYPTDSGYALGCRLEEKIAMDRICRIRQHNTTNHFTLVCRDLSELS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIET 130
            +A VD  +  L K   PG  T +L          L     KT   RV        L+  
Sbjct: 77  TYAHVDNYAFKLIKNNIPGSYTFILRATKEVP-RRLMNDKRKTIGLRVLTNPIALALMAL 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
              PL   +    G     +   ++  ++ K++ LII GGI +    ST++++     V
Sbjct: 136 LKEPLMSTTLILQGNDRAESDPEVIKKNLSKQVDLIIHGGILEA-QPSTVIDMTTSAPV 193


>gi|196005123|ref|XP_002112428.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens]
 gi|190584469|gb|EDV24538.1| hypothetical protein TRIADDRAFT_25776 [Trichoplax adhaerens]
          Length = 219

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 17/210 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+  A E L AG  IA+PT+T+YG+A  ++ P A+ +LY  K R   NP+   V D++ +
Sbjct: 1   AVSAAKESLQAGNIIALPTDTIYGIAALAQLPNAVDKLYNTKGRRRDNPISICVGDVADL 60

Query: 71  KKHASVDP-----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           K+   + P     +   L     PGP+TLV        ++P    N      R+P   F 
Sbjct: 61  KRQVHLRPWCSVCVCDALLYDLLPGPVTLVFQRHPV--LNPKLNPNTNLVGIRIPDFPFI 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIG------LE 177
           +++      PLA+ SAN+S  +S   +      S+  ++ +I DGG IS+ G      L 
Sbjct: 119 REVARACDQPLALTSANKSLALSSLAIDE--FQSLWDQLDVIFDGGRISQSGDDQSSRLG 176

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           ST++N+  E   +I+R G     T+K  ++
Sbjct: 177 STVINLSVEGYFKIIRKGSAFENTVKLLVN 206


>gi|300776648|ref|ZP_07086506.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
           35910]
 gi|300502158|gb|EFK33298.1| Sua5/YciO/YrdC/YwlC family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 182

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 7/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    E L +G  I  PT+T++G+  D+ N  A+ +++EIKKR     +I  V     ++
Sbjct: 1   MEHIIEILKSGGTILYPTDTIWGIGCDATNIEAVNKIFEIKKREKNKSMIILVESEKRLQ 60

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130
               V  ++  +       P+T+V +      +     A   +   R V   F KKLI  
Sbjct: 61  DLVDVPEMAWEIID-LSEKPVTIVYENP--RGLPKELLAEDGSIGIRLVKNDFCKKLITK 117

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQCEKK 188
              PL   SAN SG+ S      I    I   +   ++    K+     S+++ +  + +
Sbjct: 118 LNRPLVSTSANFSGEKSPLKFSDISQEMID-LVDYAVEEDREKVSKYSGSSVIKIWNDNR 176

Query: 189 VRILRP 194
           +++LR 
Sbjct: 177 IKVLRE 182


>gi|170719276|ref|YP_001746964.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas putida W619]
 gi|212288216|sp|B1J499|RIMN_PSEPW RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|169757279|gb|ACA70595.1| SUA5/yciO/yrdC domain [Pseudomonas putida W619]
          Length = 185

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 70/187 (37%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A   + AG  IA PTE V+GL  D  N  A+ RL  +K RP    LI    
Sbjct: 1   MVSSWRVQQAAREIRAGAVIAYPTEAVWGLGCDPWNEDAVYRLLALKSRPVDKGLILVAD 60

Query: 66  DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I          P          WPGP T ++       +    T    T   RV     
Sbjct: 61  NIRQFDFLFEDFPEDWIDRMGSTWPGPNTWLVPHQD--LLPEWVTGQHDTVALRVSDHPQ 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   S N  G+ +  +   +       ++ +++ G +      S I N+ 
Sbjct: 119 VRELCALVGPLISTSCNPGGRPAAKSRLRV-EQYFHGDLDMVLGGALGGRKNPSVIRNLA 177

Query: 185 CEKKVRI 191
             + VR 
Sbjct: 178 TGEIVRP 184


>gi|167718307|ref|ZP_02401543.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei DM98]
          Length = 141

 Score =  146 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+  A   LDAG  +A PTETVYGL  D++NP A+ R+Y  K RPA +P+I H++  S
Sbjct: 11  AEAIEDAAARLDAGELVAFPTETVYGLGADAQNPAAVARIYAAKGRPANHPVIVHLAPGS 70

Query: 69  MVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                    P  +  L   FWPGPLTL+L     T I    +    +   R P     + 
Sbjct: 71  DPGYWVEALPADAKKLIDAFWPGPLTLILKR--ATHIPDAVSGGQDSVGLRCPSHPVAQA 128

Query: 127 LIETYG 132
           L+  + 
Sbjct: 129 LLRAFD 134


>gi|159039551|ref|YP_001538804.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
 gi|157918386|gb|ABV99813.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
          Length = 214

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 8/205 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK-KRPAMNPLICHVSDI 67
              +  A E +  G  + +PT+TVYG+  D+  P A++ L + K  RP   P    +   
Sbjct: 12  DRGVAAAIEAVRGGELVVLPTDTVYGVGADAFTPHAVKALLDAKGGRPV--PPPVLIGSR 69

Query: 68  SMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
             +      +   +  L + FWPG LT+V++   +       T+   T   R+P      
Sbjct: 70  RTLDGLVFRLPRAARDLVEAFWPGALTIVVEHSPSLRWDLGETSG--TVAVRMPLHPVAL 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     P+A+ SAN +G  + T         +   +   ++ G +   + STIV++   
Sbjct: 128 EVLRETGPMAVASANTAGLPAATTA-EAARGQLAYSVRTYLEAGPAVDPVPSTIVDLTGA 186

Query: 187 KKVRILRPGGLEIETLKRAISVELE 211
              +++R G + ++ L+  +   +E
Sbjct: 187 VP-QLVRAGAIGLDRLRDVVPDIVE 210


>gi|145596153|ref|YP_001160450.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440]
 gi|145305490|gb|ABP56072.1| translation factor SUA5 [Salinispora tropica CNB-440]
          Length = 236

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 6/199 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +  A + +  G  + +PT+TVYG+  D+  P A++ L + K      P    +    
Sbjct: 34  DRGIAAAIKAIRDGELVVLPTDTVYGIGADAFTPHAVKALLDAKG-GQPVPPPVLIGSRH 92

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            +     S+   +  L + FWPG LT+V++   +       T+       R+P       
Sbjct: 93  TLDGLVFSLPSAARDLVEAFWPGALTIVVEHSPSLRWDLGETSGR--VAVRMPLHPVALE 150

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     P+A+ SAN +G  + T         +   +   ++ G +   + STIV++    
Sbjct: 151 VLRETGPMAVASANTAGLPAATTA-EAARGQLAYSVRTYLEAGPAVDPVPSTIVDLTGAV 209

Query: 188 KVRILRPGGLEIETLKRAI 206
             +++R G ++++ L+  +
Sbjct: 210 P-QLIRAGAIDLDRLRDVV 227


>gi|331697833|ref|YP_004334072.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952522|gb|AEA26219.1| Sua5/YciO/YrdC/YwlC family protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 206

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 4/195 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A+ +  E +     IA PT++++ L     N   I R+ EI+     +       D + 
Sbjct: 15  RAITQVVEMVREDGLIAYPTDSLFALGCRLGNAEGIARIREIRHLDDKHHFTLVCRDFAQ 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           + +  +V        K   PG  T +L          L     KT   R+P     + L+
Sbjct: 75  LGQFVTVSNSLFRTLKAATPGSYTFILPATREVP-RRLLHPKKKTVGVRIPEHTVVRALL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G PL   S     +         +   +   +  ++D G   +   +T+++    + 
Sbjct: 134 DELGEPLLSSSLLLPDEPEPLTQGWEIKERLDHLVDAVVDSGECGV-EPTTVIDFSGPEP 192

Query: 189 VRILRPGGLEIETLK 203
             I+R G    +  +
Sbjct: 193 -EIVRRGAGPTDLFE 206


>gi|302867807|ref|YP_003836444.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315505789|ref|YP_004084676.1| sua5/ycio/yrdc/ywlc family protein [Micromonospora sp. L5]
 gi|302570666|gb|ADL46868.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora aurantiaca ATCC
           27029]
 gi|315412408|gb|ADU10525.1| Sua5/YciO/YrdC/YwlC family protein [Micromonospora sp. L5]
          Length = 206

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+  + L A   IA PT++ Y L     N   + R+ EI++    +P     +D +
Sbjct: 14  PRVIRQVVDLLRADGVIAYPTDSCYALGCRIGNRDGVERIREIRRLDDRHPFTLMCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +        K   PG  T +L   +      L     +    RVP    T+ L
Sbjct: 74  QLGQFVKLSNAVFRQVKSVIPGSYTFLLPATAEVP-RRLQDPRRRVVGARVPRHTVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   +  ++D G   +   +T+V++   +
Sbjct: 133 LAELGEPLLTSTLLLPGEDEPMTQGWEIKERLDHLVDAVVDAGDCGL-EPTTVVDLSGPE 191

Query: 188 KVRILRPGGLEIETLK 203
              ILR G  +    +
Sbjct: 192 P-EILRRGAGDPARFE 206


>gi|15595220|ref|NP_248712.1| hypothetical protein PA0022 [Pseudomonas aeruginosa PAO1]
 gi|107099015|ref|ZP_01362933.1| hypothetical protein PaerPA_01000023 [Pseudomonas aeruginosa PACS2]
 gi|116053742|ref|YP_788177.1| hypothetical protein PA14_00240 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888768|ref|YP_002437632.1| putative translation factor [Pseudomonas aeruginosa LESB58]
 gi|254237736|ref|ZP_04931059.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254243134|ref|ZP_04936456.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296386495|ref|ZP_06875994.1| putative translation factor [Pseudomonas aeruginosa PAb1]
 gi|313111455|ref|ZP_07797257.1| putative translation factor [Pseudomonas aeruginosa 39016]
 gi|81542151|sp|Q9I7A5|RIMN_PSEAE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|122262123|sp|Q02V59|RIMN_PSEAB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|9945841|gb|AAG03412.1|AE004441_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115588963|gb|ABJ14978.1| putative translation factor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169667|gb|EAZ55178.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126196512|gb|EAZ60575.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218768991|emb|CAW24749.1| putative translation factor [Pseudomonas aeruginosa LESB58]
 gi|310883759|gb|EFQ42353.1| putative translation factor [Pseudomonas aeruginosa 39016]
          Length = 185

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 4/178 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  D  N  A+ RL  +K RP    LI   ++I  +    
Sbjct: 10  AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLDFLL 69

Query: 75  SVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
              P          WPGP T ++       +    T    +   RV      + +     
Sbjct: 70  EDLPDVWLDRLAGTWPGPNTWLVPHQE--RLPEWVTGVHDSVAVRVTDHPLVQELCHLTG 127

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           PL   SAN +G+ +      +       E+  I+ G +      S I ++   + +R 
Sbjct: 128 PLISTSANPAGRPAARTRLRV-EQYFHDELDAILGGALGGRRNPSLIRDLVTGQVIRP 184


>gi|196019468|ref|XP_002118987.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens]
 gi|190577439|gb|EDV18528.1| hypothetical protein TRIADDRAFT_35031 [Trichoplax adhaerens]
          Length = 185

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           I IPT+T+Y L+ D+ N  AI+++Y+IK+R     L   +S+I M + +A+     L+LA
Sbjct: 1   ICIPTDTIYALSCDATNIEAIQKIYKIKQRALDKTLPMFMSNIKMARLYANFYKKELNLA 60

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
             FWPG LTLV  + +T    P    N +    RVP     + + ++   P+   SAN S
Sbjct: 61  DKFWPGALTLVSRIKNTHKNLPNLLKNNQKVAIRVPKNKLIQSVCQSINKPIIATSANIS 120

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIG---LESTIVNVQCEKKVRILRPGGLEIE 200
            Q +I ++  I+      ++ LII             STI+     +K RILR G +  +
Sbjct: 121 NQKNINSLDEIIKE-FENKVNLIIKDNRELSDNCLTASTIIEFTNNEKYRILRKGVISKK 179

Query: 201 TLKRA 205
            L   
Sbjct: 180 ELDNI 184


>gi|146305099|ref|YP_001185564.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas mendocina
           ymp]
 gi|212288213|sp|A4XNB6|RIMN_PSEMY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|145573300|gb|ABP82832.1| translation factor SUA5 [Pseudomonas mendocina ymp]
          Length = 185

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  +  +++A   +  G  IA PTE V+GL  D  N  A+ RL  +K+RP    LI    
Sbjct: 1   MASNWQVQQAARVVCEGGVIAYPTEAVWGLGCDPWNEVAVDRLLALKERPVHKGLILVAD 60

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           DI          P          WPGP T ++       +    T    +   RV     
Sbjct: 61  DIEQFDFLLDDLPAIWQERLAASWPGPNTWLVPHQD--RLPAWITGVHDSVALRVSDHPL 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +      +++  ++ G +      S I +++
Sbjct: 119 VRALCRLTGPLISTSANPAGRPAARSRLRV-EQYFPRQLDKVLGGALGGRKNPSLIRDLR 177

Query: 185 CEKKVRI 191
               +R 
Sbjct: 178 TGDVIRS 184


>gi|213968422|ref|ZP_03396565.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301384290|ref|ZP_07232708.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060148|ref|ZP_07251689.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302130421|ref|ZP_07256411.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213926710|gb|EEB60262.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv.
           tomato T1]
 gi|330876383|gb|EGH10532.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965119|gb|EGH65379.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 185

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + +R 
Sbjct: 178 TGQVMRA 184


>gi|330901111|gb|EGH32530.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 185

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + +S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVNSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           ++            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NMRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + VR 
Sbjct: 178 TAQIVRA 184


>gi|262038853|ref|ZP_06012200.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia goodfellowii
           F0264]
 gi|261747104|gb|EEY34596.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia goodfellowii
           F0264]
          Length = 201

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 10/201 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N ++K  E L  G     PT+TVYG+    R   ++ ++YEIKKR     +I  + DISM
Sbjct: 3   NEIKKVTEILLEGGVAVFPTDTVYGIGALPR-EKSVIKIYEIKKRDFSKKIIALIEDISM 61

Query: 70  VKKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
           + +  +  P ++       K FWPG LT++    + T+        L+T   R+P     
Sbjct: 62  LNRIINETPENIEKISPVLKKFWPGELTVIF--KANTEFTGKFDRELETIGVRIPKNETA 119

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             +I+  G  L   SAN SG+ ++T +   LS  I ++   +I       G  STI+  +
Sbjct: 120 LSIIKNTGGILLTTSANISGEEAVTEL-DKLSKEIREKADYVIGDDSKLTGKPSTIIKYE 178

Query: 185 CEKKVRILRPGGLEIETLKRA 205
               + +LR G +  E +K+A
Sbjct: 179 NGN-IELLRKGNISSEDIKKA 198


>gi|331017684|gb|EGH97740.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 185

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI   +
Sbjct: 1   MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAN 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + +R 
Sbjct: 178 TGQVMRA 184


>gi|224098296|ref|XP_002195429.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 680

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 9/199 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ LR   E L+ G    +PT+TVY LA   ++P AI ++Y IK RP   P+   +S++ 
Sbjct: 468 TSGLRTIAELLNTGAVCGVPTDTVYALAASCKHPQAIEKVYRIKDRPQEKPICIFISNLE 527

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLS-----TTDIHPLSTANLKTACFRVPCG 122
            ++  A  + PL     +  +PG +  ++                      +   RVP  
Sbjct: 528 QLRAAAPPISPLLWEFMENVYPGGIGCIIQKGEWLKKLGVGAGYSRVGTQDSIMIRVPDL 587

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
                +     PLAI SAN SG++  T+   ++S  +  ++  ++  G S   + ST+VN
Sbjct: 588 TVLVHLIDMTGPLAITSANPSGEVDSTHHDMVIS-RLGHKLEGVLCDGESDEVVASTVVN 646

Query: 183 VQ--CEKKVRILRPGGLEI 199
                E  + I+R G +  
Sbjct: 647 CTKIDESGITIVREGCIPA 665


>gi|300868277|ref|ZP_07112906.1| translation factor SUA5 [Oscillatoria sp. PCC 6506]
 gi|300333712|emb|CBN58090.1| translation factor SUA5 [Oscillatoria sp. PCC 6506]
          Length = 222

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 15/194 (7%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG  +  PT+TVY +  D    +A+ R+ +IK      PL      +S + ++A V  
Sbjct: 24  LQAGAIMLYPTDTVYAIGCDLNVKSAVERVRQIKHLSNDKPLTFLCPSLSNIAQYAVVSD 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCG-FTKKLIETYGHPLA 136
               + K   PGP T +L   +T  +  L      KT   RVP   F   L+E  G+P+ 
Sbjct: 84  SGYRMIKRLIPGPYTFLLP--ATKLVPRLVMEPKRKTTGIRVPDQKFCLALLEALGNPII 141

Query: 137 IPSANRSGQISITNV-----------KHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
             SA+ +                   K  L  S+ K + +I+D         STI+++  
Sbjct: 142 STSAHITNDDEGKAPAAALATEENFGKAELFDSLEKLVDIIVDDTSETGYQVSTILDLTQ 201

Query: 186 EKKVRILRPGGLEI 199
           +K   + R  G E 
Sbjct: 202 DKPSIVRRGLGWEA 215


>gi|325981006|ref|YP_004293408.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212]
 gi|325530525|gb|ADZ25246.1| Sua5/YciO/YrdC/YwlC family protein [Nitrosomonas sp. AL212]
          Length = 210

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 75/193 (38%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +++A   +  G  I  PT++ Y L     +  A+ R+  I++    +       +++
Sbjct: 14  ARLIKQAVAIVQKGGIIVYPTDSCYALGCHLGDKDAMTRIRTIRQVDERHHFTLVCRNLT 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A VD     L K   PG  T +L          +      T   R+P       L
Sbjct: 74  EISNYAKVDNSQYRLLKATTPGSYTFILQATREVP-RRMQHPKRNTIGLRIPDHPVVLAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +          N    +   +  ++ L++D G   I + +T++++  + 
Sbjct: 133 LEELGEPLLSSTLILPDDDYPLNDAEEIRERLEHQVELVMDAGSCGIDM-TTVIDLTTDV 191

Query: 188 KVRILRPGGLEIE 200
              ++R G   ++
Sbjct: 192 PA-LVRQGKGSLD 203


>gi|91774703|ref|YP_544459.1| SUA5/yciO/yrdC-like protein [Methylobacillus flagellatus KT]
 gi|123380628|sp|Q1H4G9|RIMN_METFK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|91708690|gb|ABE48618.1| SUA5/yciO/yrdC-like protein [Methylobacillus flagellatus KT]
          Length = 180

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 68/176 (38%), Gaps = 6/176 (3%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASV 76
           FL +G  IA PTE+ +GL  D  N  A++RL  IK RP    LI      S ++K  A V
Sbjct: 9   FLRSGGVIAYPTESCFGLGCDPTNHRALKRLLRIKGRPQRKGLIVIAQHFSQLQKLIAPV 68

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135
            P         WPGP T ++   ++     L      +   RV        L    G  L
Sbjct: 69  TPEQKQRMFTRWPGPHTWLVP--ASRRCPALLRGRHTSLAVRVTANPLAANLCRHAGMAL 126

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
              SAN +G++     +      +      ++ G        STI ++     VR 
Sbjct: 127 VSTSANHNGRVPAKTAREC--HRLFGGRVKVLPGRTGGASKPSTIQDLITGAIVRP 180


>gi|94987331|ref|YP_595264.1| hypothetical protein LI0889 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731580|emb|CAJ54943.1| conserved hypothetical protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 210

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 6/197 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRN-PTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +L++A  F++ G  I  PTET +GL     N    I++++  K+R    PL   + +   
Sbjct: 6   SLKEAVNFINQGKLIIFPTETFFGLGCKIFNNEDTIQQIFIAKQRAINMPLPLIIGNWEQ 65

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI- 128
           +   A V  +   L + FWPG L++VL+  +  +I P  TA+ +    R+      K I 
Sbjct: 66  LTITAEVPQIIYPLLQHFWPGALSIVLN--AKKNISPYITASTQKVAVRLSSHPIAKEIA 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEK 187
           +  G P+   SAN +    +T +   L   +   I  IID   I   GL ST++ +    
Sbjct: 124 DLVGEPIIATSANINKNPPVTKITQ-LDIRLYPYIEGIIDIPPIPTGGLPSTLIELHPNN 182

Query: 188 KVRILRPGGLEIETLKR 204
            + ILR G ++   +K 
Sbjct: 183 TISILREGIIKSNKVKE 199


>gi|319785842|ref|YP_004145317.1| SUA5/yciO/yrdC domain [Pseudoxanthomonas suwonensis 11-1]
 gi|317464354|gb|ADV26086.1| SUA5/yciO/yrdC domain [Pseudoxanthomonas suwonensis 11-1]
          Length = 187

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 7/183 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A + L  G  IA PTE V+GL  D  N  A+ RL  IK+RP    +I   + +  V+
Sbjct: 7   IASAADLLRRGGVIAYPTEAVWGLGCDPGNEAAVLRLLRIKQRPVEKGMIVVAAGLEAVR 66

Query: 72  KHASVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +  L           WPGP T  +   ST    P  T + ++   R+        L
Sbjct: 67  PWLDLAQLPAGRMTEVAASWPGPNTWAIP--STPLAPPWVTGSHRSLAVRISAHPVVVAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E +G P+   SAN +GQ    + +  L  ++   I  ++ G    +   + I N     
Sbjct: 125 CEAFGGPVVSTSANLAGQPPAYS-REELDPALLAGIDGVVGGETGGLERPTPIRNALDGA 183

Query: 188 KVR 190
            +R
Sbjct: 184 VLR 186


>gi|302791063|ref|XP_002977298.1| hypothetical protein SELMODRAFT_176163 [Selaginella moellendorffii]
 gi|300154668|gb|EFJ21302.1| hypothetical protein SELMODRAFT_176163 [Selaginella moellendorffii]
          Length = 297

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 16/198 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +    L  G    +PT+T+Y +  D  N  AI RLY IK   A  PL         + 
Sbjct: 86  LDQVVSLLQDGGVGVVPTDTIYAIVCDLHNRAAIERLYRIKDMDAKKPLSILCRSFQDID 145

Query: 72  KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTACFRVP 120
           K+ +  P S   +A+   PGP T +L   ++ D+    T          A  K+   R+P
Sbjct: 146 KYTTGFPTSFFRVARQCLPGPYTFILP--ASKDMPKQCTRFGGSVAASYAPRKSVGVRIP 203

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                +++     HPL   S  R           I++ +    +  I+DGG +++   ST
Sbjct: 204 DDAVWREMAGQLEHPLLCTSVRRPADDEWMLDPAIIADTYGS-VDFIVDGG-TRVANPST 261

Query: 180 IVNVQCEKKVRILRPGGL 197
           +V++     V + R  G+
Sbjct: 262 VVDMTGTMPVVLRRGKGV 279


>gi|237801643|ref|ZP_04590104.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024502|gb|EGI04558.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 185

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + +R 
Sbjct: 178 TGQVMRA 184


>gi|239946135|ref|ZP_04698072.1| hypothetical protein SrosN15_34441 [Streptomyces roseosporus NRRL
           15998]
 gi|239985789|ref|ZP_04706453.1| hypothetical protein SrosN1_00630 [Streptomyces roseosporus NRRL
           11379]
 gi|239992609|ref|ZP_04713273.1| hypothetical protein SrosN1_35273 [Streptomyces roseosporus NRRL
           11379]
          Length = 206

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +    + L +G  +A PT++ Y L     N  AI R+  I+     +       D +
Sbjct: 14  PRTIGTVVDSLRSGALVAYPTDSCYALGCQLGNRDAIDRIRAIRNLDDRHHFTLVCHDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            + +   VD       K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QLAQFVRVDNDVFRAVKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +  E+  +ID G       +T+++   ++
Sbjct: 133 VSELGEPLLSSTLLLPDEEEPLTQGWEIKERLDHEVDAVIDSGDCGT-EPTTVIDFSGDE 191

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  +    +
Sbjct: 192 P-EIVRRGAGDTSRFE 206


>gi|312958123|ref|ZP_07772646.1| SUA5/YciO/YrdC-like probable translation factor [Pseudomonas
           fluorescens WH6]
 gi|311287554|gb|EFQ66112.1| SUA5/YciO/YrdC-like probable translation factor [Pseudomonas
           fluorescens WH6]
          Length = 185

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 67/187 (35%), Gaps = 5/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +     L  A E   AG  IA PTE V+GL  D  N  A+ RL  IK R     LI    
Sbjct: 2   VNRWRVLETAREI-RAGAVIAYPTEAVWGLGCDPWNEEAVDRLLAIKNRSVDKGLILVAD 60

Query: 66  DISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I          P          WPGP T ++       +    T    T   RV     
Sbjct: 61  NIRQFDFLFEDFPQDWIDRMASTWPGPNTWLVPHQD--LLPEWVTGVHDTVALRVTDHPL 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + + +   PL   SAN  G+ +      +       ++ L++ G +      S I ++ 
Sbjct: 119 VRDLCSLVGPLISTSANPQGRPAARTRIRV-EQYFRGQVDLVLGGALGGRKNPSLIRDLV 177

Query: 185 CEKKVRI 191
             + VR 
Sbjct: 178 TGEVVRP 184


>gi|145594996|ref|YP_001159293.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora tropica CNB-440]
 gi|145304333|gb|ABP54915.1| translation factor SUA5 [Salinispora tropica CNB-440]
          Length = 206

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              LR+    +  G  IA PT++   L     +   + R+ +I++    +       D +
Sbjct: 14  PRILRQVVGLVRDGGLIAYPTDSCCALGCQLGDRRGLDRIRDIRRLDERHHFTLVCRDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +      L K   PG  T +L          +     +T   RVP     + L
Sbjct: 74  QLGQFVQISNAVFRLVKSCIPGSYTFILPATREVP-RRMLHPRKRTVGVRVPDHAVAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G P+   +    G+         +   +   +  ++D G       +T+V++  ++
Sbjct: 133 LAELGEPMVSSTLILPGEEEPLTQGWEIKERLDHVLDGVVDAGDCG-KEPTTVVDLSGDE 191

Query: 188 KVRILRPGGLEIETLK 203
              +LR G  +    +
Sbjct: 192 P-EVLRRGAGDPSRFE 206


>gi|124267942|ref|YP_001021946.1| hypothetical protein Mpe_A2757 [Methylibium petroleiphilum PM1]
 gi|124260717|gb|ABM95711.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 209

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              L++A + L  G   AIPT++ Y L     +  A   L  I+     + L     D+S
Sbjct: 14  PRLLKQAVQILHGGGIAAIPTDSSYALVCHLDDKAAAESLRRIRGVDDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L KL  PGP T +L+         +S  + +T   RVP    T+ L
Sbjct: 74  ELANYARVDNRQYRLLKLGTPGPYTFILEATKEVP-RRVSHPSRRTIGLRVPEHAVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +     +    N  H +     K++  I+D G   +   +T++++  ++
Sbjct: 133 LELLGQPLLATTLIPPNEAEALNDPHEIRQRFEKQLQAIVDAGACPM-QPTTVIDLSGDE 191

Query: 188 KVRILRPGG 196
            V + R  G
Sbjct: 192 TVLVRRGSG 200


>gi|284007497|emb|CBA72979.1| dsRNA-binding protein [Arsenophonus nasoniae]
          Length = 206

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +    L+ G  I  PT++ Y +     N  A+ ++  +++  + +       ++S
Sbjct: 14  PRLISQCVNILNKGGIIVYPTDSGYAIGCKLDNKNALTQICRLRQLDSRHNFTLMCRNLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            + ++A +D     + K   PG  T +L          +     KT   R+P     K L
Sbjct: 74  EIAEYAYLDNPVFRMIKNSTPGHYTFILRATKEVP-RRIMNKKRKTIGIRLPSNPIAKDL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G     +    + S I +++ LII+GG   +  +ST V    E 
Sbjct: 133 LNGIGEPLLSTSLILPGDDFAQSSAEEIESLIGEQVDLIINGGY--LSEKSTTVVDLTES 190

Query: 188 KVRILRPGGLEIETLK 203
              I+R G   +   +
Sbjct: 191 TPNIIRVGMGSLTPFE 206


>gi|332139435|ref|YP_004425173.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549457|gb|AEA96175.1| putative double-stranded RNA-binding protein with unique protein
           fold, with YrdC/RibB domain [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 201

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 8/188 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +++ +       +AG  I  PTE V G+  D  N  A+  L +IK+RP    +I   ++ 
Sbjct: 18  NASEVDPVVAAFEAGRLIVYPTEAVMGIGCDPDNEAAVNALLDIKQRPVEKGVILIAANY 77

Query: 68  SMVKKHASVDPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           S +  +   + +       +F  WPGP T +L   S+  +    T        RV     
Sbjct: 78  SQLLPYVDDNAIRPDRRTDIFSSWPGPNTWLLPKSSSAPV--WLTGKHSKIAVRVTNHPV 135

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L    G PL   SAN +GQ   T+       ++  +    ++G +      STI + 
Sbjct: 136 VVALCNKLGKPLVSTSANLTGQPPATDTDEA--KAVFADSVFYVEGKVGGATKPSTIRDG 193

Query: 184 QCEKKVRI 191
              + +R 
Sbjct: 194 DTAEVIRA 201


>gi|116670579|ref|YP_831512.1| translation factor SUA5 [Arthrobacter sp. FB24]
 gi|116610688|gb|ABK03412.1| translation factor SUA5 [Arthrobacter sp. FB24]
          Length = 206

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +  E L +G  IA PT++ Y L     N  A+ R+  I++    +       D +
Sbjct: 14  PRAIGQIVELLRSGGLIAYPTDSCYALGAQLGNREALDRIRAIRQLDNKHHFTLVCKDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QLGQFVQIDNDVFRSIKAVTPGSYTFILPATKEVP-KRLLHPKKKTVGVRIPDNAVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  ++D G       +T+++     
Sbjct: 133 LAELGEPLLSSTLLLPDEEEPLTQGWEIKERLDHVVDAVVDSGDCGA-EPTTVIDFSS-G 190

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 191 SAEVVRHG 198


>gi|291449585|ref|ZP_06588975.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291352532|gb|EFE79436.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 200

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +    + L +G  +A PT++ Y L     N  AI R+  I+     +       D +
Sbjct: 8   PRTIGTVVDSLRSGALVAYPTDSCYALGCQLGNRDAIDRIRAIRNLDDRHHFTLVCHDFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            + +   VD       K   PG  T +L          L     KT   R+P     + L
Sbjct: 68  QLAQFVRVDNDVFRAVKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +  E+  +ID G       +T+++   ++
Sbjct: 127 VSELGEPLLSSTLLLPDEEEPLTQGWEIKERLDHEVDAVIDSGDCGT-EPTTVIDFSGDE 185

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  +    +
Sbjct: 186 P-EIVRRGAGDTSRFE 200


>gi|288818672|ref|YP_003433020.1| translation factor SUA5 protein [Hydrogenobacter thermophilus TK-6]
 gi|288788072|dbj|BAI69819.1| translation factor SUA5 protein [Hydrogenobacter thermophilus TK-6]
 gi|308752261|gb|ADO45744.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 203

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 12/208 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+++      AL  A + L+ G  +  PT+T+YGL  D+  P A+ RLY I +RP+  P 
Sbjct: 1   MKVVKAHQKRALPLAAKVLEKGGIVFAPTDTIYGLLADATKPKAVERLYSI-RRPSGRPF 59

Query: 61  ICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I  + D   ++       P    L        +T++    +T  +H   T   K+  FRV
Sbjct: 60  ILLLPDKYWLEVFDIYAKPTYWDLLDAH----ITVIFYKRTTIPMH--LTRGKKSLAFRV 113

Query: 120 PCG--FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           P    F + L+     PL  PSAN  G     +VK  +      ++ L +D G  + G  
Sbjct: 114 PKRGTFIRDLLLYLDAPLVAPSANPEGMEPAKDVKMAM-DYFGDKVDLYVDAGRIE-GKP 171

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205
           STIV +  + ++R++R G +  + +   
Sbjct: 172 STIVRLIGKNRIRLVREGSVSFKEILEF 199


>gi|303257826|ref|ZP_07343836.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium
           1_1_47]
 gi|302859429|gb|EFL82510.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderiales bacterium
           1_1_47]
          Length = 207

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 5/204 (2%)

Query: 1   MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +Q+M  +   + + +A + L  G   A+ T+T + L     +  A+ ++  I++      
Sbjct: 5   LQVMPESPQPHRIEQAAKLLTKGQVAAVSTDTGFSLVCRLDDKEALDKIRLIRQLSEKKH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                  +S + K A V+     +AK   PGP T +L+         LS  + KT   RV
Sbjct: 65  FTLFCDSLSQMSKLARVNNTGYRMAKSVTPGPYTFILEATKEVP-RRLSHPSKKTIGLRV 123

Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+E  G PL   +    G+    +    +   I  ++  I+D G S IG ++
Sbjct: 124 PSNKALHALLEKIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG-DT 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202
           T+V++  ++   ++R G   +  L
Sbjct: 183 TVVDLSGDEP-EVIREGLGSVSAL 205


>gi|58580201|ref|YP_199217.1| hypothetical protein XOO0578 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622196|ref|YP_449568.1| hypothetical protein XOO_0539 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574926|ref|YP_001911855.1| Sua5/YciO/YrdC family protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|75436872|sp|Q5H5D8|RIMN_XANOR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|123523292|sp|Q2P833|RIMN_XANOM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288246|sp|B2SL46|RIMN_XANOP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|58424795|gb|AAW73832.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366136|dbj|BAE67294.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519378|gb|ACD57323.1| Sua5/YciO/YrdC family protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 187

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L  G  IA PTE V+GL  D R   A+ RL EIK+RP    +I   S + +++
Sbjct: 7   LDNAVATLTQGGVIAYPTEAVWGLGCDPRQEAAVLRLLEIKRRPVDKGVIVVTSRVDVLR 66

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D L+          WPGP T +L +  T       T        R+        L
Sbjct: 67  DWVDIDALAPARRQDVLASWPGPHTWILPV--TARAPRWVTGEHDGLAVRISAHPVVAAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  +
Sbjct: 125 CAAWGAPLVSTSANLAGEPPARS-RAALEPALLATIDGVVDGEVGALAQPTRIRDARSGQ 183

Query: 188 KVRI 191
            +R 
Sbjct: 184 ILRD 187


>gi|183219444|ref|YP_001837440.1| hypothetical protein LEPBI_I0017 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909589|ref|YP_001961144.1| SUA5 family translation factor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774265|gb|ABZ92566.1| Translation factor, SUA5 family [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777866|gb|ABZ96164.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 210

 Score =  145 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 6/188 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++  + L  G     PT+TVY +  D+ + TA+ ++Y IKK P   PL     DISM
Sbjct: 13  RKLKQISDRLKDGAIYIFPTDTVYAIIADANSKTAVEKIYSIKKLPKDKPLSLLCRDISM 72

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
                  +   +    K   PGP T VL          ++    K    R+P     ++L
Sbjct: 73  ASHFIEYLPNSAYRFMKRMTPGPFTFVLKANKNLPKPSIAHHKDKQIGIRIPDHIYLQEL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++ +  PL   SA    +  I      L S     +  IIDGGI KI L ST++ +  + 
Sbjct: 133 LKIHDSPLTSTSAFSDDEFIIDIDD--LESIYGNLVDGIIDGGIVKIEL-STMIQIH-DD 188

Query: 188 KVRILRPG 195
            + ++R G
Sbjct: 189 SLELIRAG 196


>gi|66043293|ref|YP_233134.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
 gi|302186431|ref|ZP_07263104.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae 642]
 gi|75504059|sp|Q500S6|RIMN_PSEU2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|63254000|gb|AAY35096.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae
           B728a]
 gi|330937247|gb|EGH41263.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330970346|gb|EGH70412.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330976425|gb|EGH76481.1| SUA5/yciO/yrdC [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 185

 Score =  145 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + VR 
Sbjct: 178 TAQIVRA 184


>gi|317153990|ref|YP_004122038.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944241|gb|ADU63292.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 204

 Score =  145 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 2/187 (1%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + + AG  +  PTET+Y L  D+ +  A  ++ +IK R A+ PL   +  + M+      
Sbjct: 6   KAMTAGDVVVYPTETLYALGCDATSEAACEKVMDIKGRSAVKPLPLIIGGVDMLGLVTDD 65

Query: 77  DPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            P + L LA  FWPGPL++++  L       LS  +  T+       F  +L      P+
Sbjct: 66  RPAALLELASSFWPGPLSILVKALPELPSC-LSDEDGYTSVRWSGHPFASELSRRLRKPI 124

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
              SAN SG++ +   + +    +     + +D    K G  ST++ V    ++ +LR G
Sbjct: 125 VATSANLSGEVPVALPEDLSPRLVELAGAVYVDPPWPKGGKPSTVIRVLGATRLEVLREG 184

Query: 196 GLEIETL 202
            + ++ L
Sbjct: 185 AVSVKKL 191


>gi|302334926|ref|YP_003800133.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Olsenella uli DSM 7084]
 gi|301318766|gb|ADK67253.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Olsenella uli DSM 7084]
          Length = 524

 Score =  145 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 8/203 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSR--NPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +R     L  G  I +PT++VYG+   +   NP    R ++IK+R     L   ++D+ 
Sbjct: 323 VVRDVARVLLDGGVIVVPTDSVYGIGCAATPGNP-GHARTFQIKRRALSQTLPWLIADVQ 381

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            +++    V   +  LA+ FWPG LTLV+             ++  T   R+P     ++
Sbjct: 382 DLERFGHRVPKWAYALAREFWPGALTLVVRASPLVP-AEYRRSDDGTIALRLPDSNLVRE 440

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           +    G PLAI SAN  G  S T+ +  +   I  E+ L++DGG S +   STIV+    
Sbjct: 441 IAREVGAPLAITSANTHGASSATSGEG-IEGRIAGEVDLVLDGGPSPLAAASTIVDCTGA 499

Query: 187 KKVRILRPGGLEIETLKRAISVE 209
              R+LR G +    + R    +
Sbjct: 500 DP-RVLREGAIPSVGIMRVADPD 521


>gi|71735048|ref|YP_272338.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485581|ref|ZP_05639622.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289647923|ref|ZP_06479266.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|123638999|sp|Q48QH8|RIMN_PSE14 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|71555601|gb|AAZ34812.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326685|gb|EFW82730.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331341|gb|EFW87284.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867904|gb|EGH02613.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330890229|gb|EGH22890.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330985720|gb|EGH83823.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011869|gb|EGH91925.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 185

 Score =  145 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + +R 
Sbjct: 178 TGQVMRA 184


>gi|271965090|ref|YP_003339286.1| hypothetical protein Sros_3610 [Streptosporangium roseum DSM 43021]
 gi|270508265|gb|ACZ86543.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 206

 Score =  145 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/188 (21%), Positives = 65/188 (34%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E L A   IA PT++ Y L     N   I R+ EI+K  + +       D +
Sbjct: 14  PRLISQIVELLHADGLIAYPTDSCYALGCRLGNKEGIDRIREIRKLGSDHHFTLICRDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
              +   V        K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 74  QFGQFVHVSNALFRSVKAATPGGYTFILPATKEVP-RRLLHPRKKTVGVRIPDHVVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  +ID G       +T+V+    +
Sbjct: 133 LAELGEPLLSSTLLLPDETEPLTQGWEIKERLDHVVDAVIDSGECGA-TPTTVVDFSQGE 191

Query: 188 KVRILRPG 195
              ILR G
Sbjct: 192 P-EILRRG 198


>gi|220912546|ref|YP_002487855.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus
           A6]
 gi|219859424|gb|ACL39766.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter chlorophenolicus
           A6]
          Length = 206

 Score =  145 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +A   +  G  IA PT++ Y L     N  A+ R+  I+     +       D +
Sbjct: 14  PRAIAQAVSIVRDGGLIAYPTDSCYALGAQMGNKEALDRIRTIRHLDDKHHFTLVCRDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +  ++        K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QLGQFVNIGNDVFRSIKSVTPGSYTFILPATKEVP-KRLLHPKKKTVGVRIPDNRVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +     V   +   +  ++  +ID G       +T+V+     
Sbjct: 133 LAELGEPLLSSTLLLPDEDEPLTVGWEIKERLDHQVDAVIDAGDCGA-EPTTVVDFSS-G 190

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 191 VAEVVRHG 198


>gi|330998752|ref|ZP_08322480.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329576249|gb|EGG57765.1| Sua5/YciO/YrdC/YwlC family protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 207

 Score =  145 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 5/204 (2%)

Query: 1   MQIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +Q+M  +   + + +A + L  G   A+ T+T + L     +  A+ ++  I++      
Sbjct: 5   LQVMPESPQPHRIEQAAKLLTKGQLAAVSTDTGFSLVCRLDDKEALDKIRLIRQLSEKKH 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                  +S + K A V+     +AK   PGP T +L+         LS  + KT   RV
Sbjct: 65  FTLFCDSLSQMSKLARVNNTGYRMAKSVTPGPYTFILEATKEVP-RRLSHPSKKTIGLRV 123

Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+E  G PL   +    G+    +    +   I  ++  I+D G S IG ++
Sbjct: 124 PSNKALHALLEKIGEPLVGTTVIMPGEEEPLSSAWEIQDRIGDQLAFILDDGTSVIG-DT 182

Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202
           T+V++  ++   ++R G   +  L
Sbjct: 183 TVVDLSGDEP-EVIREGLGSVSAL 205


>gi|325963157|ref|YP_004241063.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469244|gb|ADX72929.1| translation factor SUA5 [Arthrobacter phenanthrenivorans Sphe3]
          Length = 206

 Score =  145 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +A + L  G  +A PT++ Y L     N  A+ R+  I++    +       D +
Sbjct: 14  PRAISQAVKILLDGGLVAYPTDSCYALGAQVGNREALDRIRSIRRLDDKHHFTLVCRDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +        K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QLGQFVHIGNDVFRSIKAVTPGGYTFILPATKEVP-KRLLHPKKKTVGVRIPDNRVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +  E+  +ID G       +T+++     
Sbjct: 133 LAELGEPLLSSTLLLPDEEDPLTQGWEIKERLDHEVDAVIDAGDCGS-EPTTVIDFSS-G 190

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +    +
Sbjct: 191 TAEVVRRGTGDPSRFE 206


>gi|302780313|ref|XP_002971931.1| hypothetical protein SELMODRAFT_441705 [Selaginella moellendorffii]
 gi|300160230|gb|EFJ26848.1| hypothetical protein SELMODRAFT_441705 [Selaginella moellendorffii]
          Length = 303

 Score =  145 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 20/203 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +    L  G    +PT+T+Y +  D  N  AI RLY IK   A  PL         + 
Sbjct: 86  LDQVVSLLQDGGVGVVPTDTIYAIVCDLHNRAAIERLYRIKDMDAKKPLSILCRSFQDID 145

Query: 72  KHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTACFRVP 120
           K+ +  P S   +A+   PGP T +L   ++ D+    T          A  K+   R+P
Sbjct: 146 KYTTGFPTSFFRVARQCLPGPYTFILP--ASKDMPKQCTRFGGSVAASYAPRKSVGVRIP 203

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC-----KEIPLIIDGGISKI 174
                +++     HPL   S  R           I++ +       + +  I+DGG +++
Sbjct: 204 DDSVWREMAGQLEHPLLCTSVRRPADDEWMLDPAIIADTYGVSSGRESVDFIVDGG-TRV 262

Query: 175 GLESTIVNVQCEKKVRILRPGGL 197
              ST+V++     V + R  G+
Sbjct: 263 ANPSTVVDMTGTMPVVLRRGKGV 285


>gi|74318478|ref|YP_316218.1| translation factor SUA5 [Thiobacillus denitrificans ATCC 25259]
 gi|123611282|sp|Q3SG43|RIMN_THIDA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|74057973|gb|AAZ98413.1| probable Sua5/YciO/YrdC family protein [Thiobacillus denitrificans
           ATCC 25259]
          Length = 188

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 6/177 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-S 75
            +L  G  IA PTE+ YGL  D RN  A+RRL  +K R A   ++        ++    +
Sbjct: 16  AYLRRGGVIAYPTESCYGLGCDPRNAAALRRLIRLKGRDAGKGMLLIADRYRRLQPFVGA 75

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           + P      +  WPGP+T V+   ++    P  T    T   RV        L  + G  
Sbjct: 76  LSPTGRARMRRSWPGPVTWVVP--ASRRCPPELTGGRTTVAVRVTAHRPAAALCRSLGTA 133

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           L   SAN+SG                  +  ++DG I      ST++++   K +R 
Sbjct: 134 LVSTSANKSGHTPAKTAAQC-RRMFGARV-RVVDGRIGTRRRPSTLIDLATGKILRA 188


>gi|159038218|ref|YP_001537471.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
 gi|157917053|gb|ABV98480.1| Sua5/YciO/YrdC/YwlC family protein [Salinispora arenicola CNS-205]
          Length = 206

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              LR+    + AG  IA PT++ + L     +   + R+ +I++    +       D +
Sbjct: 14  PRILRQVVGLVQAGGLIAYPTDSCFALGCQLGDRHGLDRIRDIRRLNERHHFTLVCRDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   V      L K   PG  T VL          +     +T   RVP    T+ L
Sbjct: 74  QLGQFVQVSNAMFRLVKSCIPGSYTFVLPATREVP-RRMLHPRKRTVGVRVPDHAVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  ++D G       +T+V++  ++
Sbjct: 133 LAELGEPLVSSTLVLPDEDEPLTQGWEIKERLDHVLDGVVDAGDCG-KDPTTVVDLSGDE 191

Query: 188 KVRILRPGGLEIETLK 203
              +LR G  +    +
Sbjct: 192 P-EVLRRGAGDTSRFE 206


>gi|298484630|ref|ZP_07002734.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298160854|gb|EFI01871.1| tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 185

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MASSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + +R 
Sbjct: 178 TGQVMRA 184


>gi|228471330|ref|ZP_04056131.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3]
 gi|228306831|gb|EEK15944.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3]
          Length = 230

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 6/187 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A R+A + L  G  I  PT+T++GL  D+ N  A+ RL  +K RP   P++  V     
Sbjct: 47  SAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDMR 106

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +  +    P   +        PLT++       ++ P   A   +   R+      +++ 
Sbjct: 107 IPSYVRTVPSMAYQLIDVAVRPLTIIYP--GGRNVAPQLLAEDGSIGIRIASDTLCQEIC 164

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCE 186
                PL   SAN +G  S  N    +   + K +  ++     +   G+ S I+ +   
Sbjct: 165 RLLRRPLVSTSANLAGTTSPHNYSE-IDHELIKLVDYVVPLRQEEHIDGMPSDIIKLGLN 223

Query: 187 KKVRILR 193
            +VR++R
Sbjct: 224 NEVRVIR 230


>gi|332289472|ref|YP_004420324.1| putative ribosome maturation factor [Gallibacterium anatis UMN179]
 gi|330432368|gb|AEC17427.1| putative ribosome maturation factor [Gallibacterium anatis UMN179]
          Length = 187

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 72/189 (38%), Gaps = 8/189 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + + N L      L  G  IA PTE V+GL  D  N  AI +L ++K+RP    LI    
Sbjct: 1   MKEMNNLDFIISQLKQGEVIAYPTEAVFGLGCDPFNDQAIEKLLKLKQRPQEKGLILIAP 60

Query: 66  DIS---MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPC 121
            +     +     +    L   +  +  P T ++ +     + PL T    T   R    
Sbjct: 61  HLDFFKQIIDFNKLSAQDLQRLQQTYSRPTTWIVPVQK--QVSPLLTGRFDTIAVRLCRH 118

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + L +    P+   SAN SGQ      + +  +   +  P ++   +      S I 
Sbjct: 119 PAVEMLCQLAKMPITSTSANFSGQEPCRTYQQV-QAQFGESFP-VLQAEVGDAKNPSEIR 176

Query: 182 NVQCEKKVR 190
           ++   + VR
Sbjct: 177 DLFTNQIVR 185


>gi|253996063|ref|YP_003048127.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8]
 gi|253982742|gb|ACT47600.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera mobilis JLW8]
          Length = 208

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 75/194 (38%), Gaps = 5/194 (2%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S      + +  + L  G  I  PT++ Y L     +  A  R+ +I+     +     
Sbjct: 9   LSNPQPRLIVQTADILRKGGVIVYPTDSGYALGCMLGHADAQARIRQIRGVDDKHLFSLM 68

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
             ++S +  +A V      L K   PG  T +L+         L      T   RVP   
Sbjct: 69  CRNLSELGNYAVVSNSQFRLLKANTPGAYTFILNATREVP-RKLQHPKRSTIGIRVPQHS 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNV-KHILSSSICKEIPLIIDGGISKIGLESTIV 181
             + L+E    P+   + +      ++ +    +   + + + L+I+    + G  +T++
Sbjct: 128 VVQALLEAIDTPMLSMTFSLPDDEDVSLMEPWAMRERLERVVDLVIEVEHCEAG-ATTVI 186

Query: 182 NVQCEKKVRILRPG 195
           ++  E  V ++R G
Sbjct: 187 DLTDETPV-LVREG 199


>gi|330470259|ref|YP_004408002.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032]
 gi|328813230|gb|AEB47402.1| sua5/ycio/yrdc/ywlc family protein [Verrucosispora maris AB-18-032]
          Length = 194

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 6/196 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            E + A     +PT+TVYGLAV   +PTAI RL+ +K RP    L   V     + +   
Sbjct: 2   AEIILAEGVALLPTDTVYGLAVRPDSPTAIDRLFAMKGRPREKNLPVMVGSGEQLSELGV 61

Query: 76  VDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
               +    LA  + PGPLTL +  +          A       R+P       I     
Sbjct: 62  DINEACSRCLASPYMPGPLTLAVGFVEDGRRPAWL-AGRDEVAVRIPAHPAMLAILAQTG 120

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL + SAN SG  +  NV  ILSS + +    +  G +SK  + ST+VN + +  V + R
Sbjct: 121 PLLVTSANISGGPTHENVPSILSSLLFEPDVTVDRGPLSK--VPSTLVNCRKDPPV-VER 177

Query: 194 PGGLEIETLKRAISVE 209
            G +    + R ++V+
Sbjct: 178 VGVVSETEILRMLNVD 193


>gi|298346859|ref|YP_003719546.1| RNA binding protein [Mobiluncus curtisii ATCC 43063]
 gi|315655404|ref|ZP_07908304.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333]
 gi|298236920|gb|ADI68052.1| RNA binding protein [Mobiluncus curtisii ATCC 43063]
 gi|315490344|gb|EFU79969.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333]
          Length = 207

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 8/207 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I  +   N    +LR+  E +  G  +A PT++ Y L     N   + R+ +I++    
Sbjct: 4   KIFELHPENPQARSLRQIVEIIQDGGIMAYPTDSGYALGCALANGAGLERIRKIRQLDDK 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D S + +   V      L K   PGP T +L          L+     T   
Sbjct: 64  HHFTLVCHDFSQLGQLVMVSNSQYRLIKSLTPGPYTFILKGTKEVPRATLNKKKH-TVGV 122

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       L+E  G  +   +    G     +    + + +   + +I+D  I     
Sbjct: 123 RIPAHKVALSLVEALGEAILSCTLLLPGDTEPLSDPVEVIAKLGHLLDVIVDSPIGSD-Q 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            +T++N++ +  + + R G   ++ L+
Sbjct: 182 ATTVINMEDDVPI-VTREGAGPVDFLE 207


>gi|323142784|ref|ZP_08077497.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT
           12066]
 gi|322417429|gb|EFY08050.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT
           12066]
          Length = 189

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 10/194 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   + KA E L  G  +  PTE +YG++  + N  A+ R+ ++K+R +   LI  VS  
Sbjct: 2   DDPKIVKAAEILKQGGVVIAPTEGLYGVSCLASNDRAVERVIKVKERSSAKGLIVAVSSF 61

Query: 68  SMVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
            M +       LS   +      WPGP T ++    +  +  L T        R      
Sbjct: 62  EMAQSLIDFSKLSSGNIDFMLSMWPGPHTFIVPAAKS--VSSLVTGGRDNIALRFTAFST 119

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            ++L E  G PL   SAN SGQ  +  +   L++    ++  I+D     +   S+I + 
Sbjct: 120 LQRLCELSGGPLISSSANISGQPPLMTLSD-LNAVFGGKVDYILDLPCQGLKGPSSIHDA 178

Query: 184 QCEKKVRILRPGGL 197
                 ++LR GG+
Sbjct: 179 ITG---KLLRKGGV 189


>gi|28493400|ref|NP_787561.1| hypothetical protein TWT433 [Tropheryma whipplei str. Twist]
 gi|28572489|ref|NP_789269.1| hypothetical protein TW335 [Tropheryma whipplei TW08/27]
 gi|28410621|emb|CAD67007.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
 gi|28476441|gb|AAO44530.1| unknown [Tropheryma whipplei str. Twist]
          Length = 225

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 101/220 (45%), Gaps = 29/220 (13%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A R A   + +G  I +PT+TVYGLA D+  P A+ RL EIK R A  P    V  I  
Sbjct: 13  SAFRAAKRSISSGGVIVVPTDTVYGLAADAFQPEAVGRLLEIKGRTAAPP--VLVGSIET 70

Query: 70  VKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            +    V P  +L LAK FWPGPLTLVL                 T   R+P       +
Sbjct: 71  FQAIVDVLPEPALALAKRFWPGPLTLVLRTRPGLLW-------GDTVAVRIPRHSFLLQL 123

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG--ISKIGLESTIVNVQC- 185
                PLA+ SAN SG+    +V+     S+  +  + IDG    +   + S+IV++   
Sbjct: 124 LDEIGPLAVSSANISGRRPALSVRSA-RGSLRDKPAMYIDGDRIDNPDRVPSSIVDLTDF 182

Query: 186 ---------------EKKVRILRPGGLEIETLKRAISVEL 210
                            + R+LR G +  ++L++A+ ++L
Sbjct: 183 CEDSAGRIFEGVSPKTAQPRLLRDGAIPWKSLEKAMQMKL 222


>gi|257790786|ref|YP_003181392.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella lenta DSM 2243]
 gi|257474683|gb|ACV55003.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella lenta DSM 2243]
          Length = 202

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 8/201 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++ R+A   L  G  +  PTETVYGL V      +   LY++K+R    P+   V  + 
Sbjct: 5   SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
            + ++ A V  L+  LA+ +WPGPLTL+++          S A   +   R+P      +
Sbjct: 65  DLDRYGAHVPDLARRLARAYWPGPLTLIVEASDAVPAAFRSAAG--SIGLRMPDNDTALE 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSI--CKEIPLIIDGGISKIGLESTIVNVQ 184
           LIE  G PLA  SAN SG  +       L   +  C  + +  D    K G+ ST+++  
Sbjct: 123 LIEAVGCPLATTSANISGLQAPGAF-DALDPVLAACVGVVVPDDTDDDKSGVASTVLDCT 181

Query: 185 CEKKVRILRPGGLEIETLKRA 205
                RILR G +    ++ A
Sbjct: 182 VN-PPRILREGAVTEADIRAA 201


>gi|90408507|ref|ZP_01216665.1| hypothetical protein PCNPT3_05174 [Psychromonas sp. CNPT3]
 gi|90310386|gb|EAS38513.1| hypothetical protein PCNPT3_05174 [Psychromonas sp. CNPT3]
          Length = 206

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 74/193 (38%), Gaps = 4/193 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+KA E L     I  PT++ Y L     N   + R+  ++     +       D+S + 
Sbjct: 17  LKKAVETLKNNGVIIYPTDSGYALGCLMDNKQGLERIRHLRDLDKKHNFTLLCRDLSEIS 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
             A +D  +  + K   PG  T +           L   + +T   R+P       L+E 
Sbjct: 77  TFARIDNQAYRMLKKNTPGAYTFIFKSTKELP-KRLMNPSKRTIGIRIPDNIIALALLEL 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   S    G  S       +   +  ++ LI++GG       +T+++   E  + 
Sbjct: 136 LGEPLMTTSLILPGNDSTEYDPEEIRDQLENQVDLILNGGYLGES-PTTVIDF-SEDSIA 193

Query: 191 ILRPGGLEIETLK 203
           I+R G  +I   +
Sbjct: 194 IMREGAGDISPFQ 206


>gi|262384492|ref|ZP_06077626.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B]
 gi|301309113|ref|ZP_07215057.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3]
 gi|262293785|gb|EEY81719.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 2_1_33B]
 gi|300832795|gb|EFK63421.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 20_3]
          Length = 186

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++KACE + AG  I  PT+T++G+  D+ N  A++R+YE+K+R     ++  +   +
Sbjct: 2   TEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRADNKAMLVLMDSEA 61

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            + ++   V  ++  L       PLT++    S  ++         +   R+    F+KK
Sbjct: 62  KLDRYVSDVPDIAWDLI-SVSDKPLTIIYS--SAKNLATNLLGADGSVGIRITNEEFSKK 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQ 184
           L E +  PL   SAN SG+ S  N   + S  I + +  I+      +     S I+ + 
Sbjct: 119 LCERFRKPLVSTSANVSGEPSPANFSEV-SEVIKEGVDYIVSYRQDDMSKAAPSGIIKLG 177

Query: 185 CEKKVRILR 193
               V+++R
Sbjct: 178 AGGLVQVIR 186


>gi|76788852|ref|YP_327938.1| sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis A/HAR-13]
 gi|76167382|gb|AAX50390.1| sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis A/HAR-13]
          Length = 281

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 16/200 (8%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E + AG   A PT+TVYGL V      A +RL+ +K R +   L  +VS +  ++ 
Sbjct: 4   QQIEESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEA 63

Query: 73  HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            A       S  + + F PGPLTL+         H       KT  FR+      +++I+
Sbjct: 64  VAQQSLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQ 116

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P    SAN SG  S  +   +      ++I +I   G   IGLEST+++   E+++
Sbjct: 117 KVG-PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID--PEERI 171

Query: 190 RILRPGGLEIETLKRAISVE 209
            + R   + I  ++  +   
Sbjct: 172 -VYRESAISIAEIETVLGAP 190


>gi|15604856|ref|NP_219640.1| SuA5 superfamily-related protein [Chlamydia trachomatis D/UW-3/CX]
 gi|237802566|ref|YP_002887760.1| hypothetical protein JALI_1361 [Chlamydia trachomatis B/Jali20/OT]
 gi|237804484|ref|YP_002888638.1| hypothetical protein CTB_1361 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255310937|ref|ZP_05353507.1| hypothetical protein Ctra62_00710 [Chlamydia trachomatis 6276]
 gi|255317238|ref|ZP_05358484.1| hypothetical protein Ctra6_00705 [Chlamydia trachomatis 6276s]
 gi|255348499|ref|ZP_05380506.1| hypothetical protein Ctra70_00720 [Chlamydia trachomatis 70]
 gi|255503040|ref|ZP_05381430.1| hypothetical protein Ctra7_00735 [Chlamydia trachomatis 70s]
 gi|255506712|ref|ZP_05382351.1| hypothetical protein CtraD_00725 [Chlamydia trachomatis D(s)2923]
 gi|3328537|gb|AAC67728.1| SuA5 Superfamily-related Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|231272784|emb|CAX09690.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273800|emb|CAX10584.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT]
 gi|289525178|emb|CBJ14653.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]
 gi|296434726|gb|ADH16904.1| hypothetical protein E150_00725 [Chlamydia trachomatis E/150]
 gi|296435653|gb|ADH17827.1| hypothetical protein G9768_00705 [Chlamydia trachomatis G/9768]
 gi|296436576|gb|ADH18746.1| hypothetical protein G11222_00710 [Chlamydia trachomatis G/11222]
 gi|296437513|gb|ADH19674.1| hypothetical protein G11074_00705 [Chlamydia trachomatis G/11074]
 gi|296438444|gb|ADH20597.1| hypothetical protein E11023_00715 [Chlamydia trachomatis E/11023]
 gi|297140012|gb|ADH96770.1| hypothetical protein CTG9301_00705 [Chlamydia trachomatis G/9301]
 gi|297748267|gb|ADI50813.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis D-EC]
 gi|297749147|gb|ADI51825.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydia trachomatis D-LC]
          Length = 281

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 16/200 (8%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E + AG   A PT+TVYGL V      A +RL+ +K R +   L  +VS +  ++ 
Sbjct: 4   QQIEESIKAGQVFAFPTDTVYGLGVSFHILDADQRLFALKHRSSQKALSVYVSSLEELEA 63

Query: 73  HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
            A       S  + + F PGPLTL+         H       KT  FR+      +++I+
Sbjct: 64  VAQQSLGASSRKIIQKFLPGPLTLITK-------HNNPRFPQKTLGFRIVNHPIVQQIIQ 116

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G P    SAN SG  S  +   +      ++I +I   G   IGLEST+++   E+++
Sbjct: 117 KVG-PFLATSANLSGFPSAVSADEVKQDFPEEDIVMI--SGECSIGLESTVID--PEERI 171

Query: 190 RILRPGGLEIETLKRAISVE 209
            + R   + I  ++  +   
Sbjct: 172 -VYRESAISIAEIETVLGAP 190


>gi|71279925|ref|YP_266809.1| putative RNA-binding protein [Colwellia psychrerythraea 34H]
 gi|123634304|sp|Q48AU1|RIMN_COLP3 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|71145665|gb|AAZ26138.1| putative RNA-binding protein [Colwellia psychrerythraea 34H]
          Length = 183

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 7/182 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +   E    G  IA PTE V+GL  D  N  A++RL ++K+R     LI      S +  
Sbjct: 4   KNVVEAFKNGGIIAYPTEAVFGLGCDPDNKEALKRLLKLKQRSPEKGLILLAGSYSQLLP 63

Query: 73  HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLI 128
           +     +           WP  +T ++      +I  L + +  T   R+        L 
Sbjct: 64  YIDDSKIPQDKRLTLLSRWPDGITQLVP--KNNNISSLLSGSFDTIAVRITSQPDVVALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +    P+   SAN SGQ      +  L   + K++  I+ G        S I++    K 
Sbjct: 122 QQTNKPIVSTSANLSGQEPAKTWQS-LDLVLSKQVDFILKGVTLGRTSPSKIIDALTGKI 180

Query: 189 VR 190
           +R
Sbjct: 181 IR 182


>gi|325924326|ref|ZP_08185870.1| translation factor SUA5 [Xanthomonas gardneri ATCC 19865]
 gi|325545191|gb|EGD16501.1| translation factor SUA5 [Xanthomonas gardneri ATCC 19865]
          Length = 191

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 7/185 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++  A   L  G  IA PTE V+GL  D R   A+ RL  IK+RP    +I   + + ++
Sbjct: 10  SVDNAVAALTRGGVIAYPTEAVWGLGCDPRQEAAVLRLLAIKRRPVDKGVIVVAASVDIL 69

Query: 71  KKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
                 D   P       + WPGP T +L +  T                R+        
Sbjct: 70  HDWVDFDALEPARKQEVLVSWPGPHTWILPV--TAQAPRWVAGAHDGLAVRISAHPVVAA 127

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L   +G PL   SAN +G+    + +  L  ++   I  ++DG +  +   + I + +  
Sbjct: 128 LCAAWGAPLVSTSANLAGEPPARS-RQSLDPALLVSIDGVVDGEVGALAQPTQIRDARSG 186

Query: 187 KKVRI 191
           + +R 
Sbjct: 187 QILRD 191


>gi|56751762|ref|YP_172463.1| hypothetical protein syc1753_d [Synechococcus elongatus PCC 6301]
 gi|81301159|ref|YP_401367.1| translation factor SUA5 [Synechococcus elongatus PCC 7942]
 gi|56686721|dbj|BAD79943.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170040|gb|ABB58380.1| translation factor SUA5 [Synechococcus elongatus PCC 7942]
          Length = 233

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 21/213 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +    E L  G  I  PT++VY +  D ++  A++R+  IK+     PL      +S
Sbjct: 14  PQQIAAIAEALRQGAVILYPTDSVYAIGCDVKDRAAVQRVRRIKEIDNDKPLTFICPSLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +  ++  +   +  L +   PGP T +L          +     +TA  R+P     + L
Sbjct: 74  VAAQYGCISDRAFRLMRELVPGPYTFLLPATPEVPRV-VMNPKRRTAGIRIPNNPICQAL 132

Query: 128 IETYGHPLAIPSAN--RSGQISITNVKH-----ILSSSICKEIPLIIDGGISKIGLE--- 177
           ++    P+   SA+   S + +    +      I  + +  E+  ++D  I     E   
Sbjct: 133 LQALEGPIISTSAHLQPSDRKAPLAYEQGPHCPIAPAELFGEVDRLVDITIEVERQEMRI 192

Query: 178 ---------STIVNVQCEKKVRILRPGGLEIET 201
                    ST++++  +  + + R  G E   
Sbjct: 193 LGADPDYQVSTVLDLTDDWPLVLRRGLGWEALE 225


>gi|317488503|ref|ZP_07947054.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. 1_3_56FAA]
 gi|316912435|gb|EFV33993.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. 1_3_56FAA]
          Length = 202

 Score =  144 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 8/201 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++ R+A   L  G  +  PTETVYGL V      +   LY++K+R    P+   V  + 
Sbjct: 5   SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KK 126
            + ++ A V  L+  LA+ +WPGPLTL+++          S A   +   R+P   T  +
Sbjct: 65  DLDRYGAHVPDLARRLARAYWPGPLTLIVEAGDAVPAAFRSAAG--SIGLRMPDNDTGLE 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLESTIVNVQ 184
           LIE  G PLA  SAN SG  +       L   +     + +  D    K G+ ST+++  
Sbjct: 123 LIEAVGCPLATTSANISGLQAPGAF-DALDPRLAARVGVVVPDDTDDDKSGVASTVLDCT 181

Query: 185 CEKKVRILRPGGLEIETLKRA 205
                RILR G +    ++  
Sbjct: 182 VN-PPRILREGAVAEADIRAV 201


>gi|150008371|ref|YP_001303114.1| putative translation factor [Parabacteroides distasonis ATCC 8503]
 gi|255015619|ref|ZP_05287745.1| putative translation factor [Bacteroides sp. 2_1_7]
 gi|256839339|ref|ZP_05544848.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375013|ref|ZP_06984970.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19]
 gi|149936795|gb|ABR43492.1| conserved hypothetical protein, putative translation factor
           [Parabacteroides distasonis ATCC 8503]
 gi|256738269|gb|EEU51594.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267513|gb|EFI09169.1| Sua5/YciO/YrdC/YwlC family protein [Bacteroides sp. 3_1_19]
          Length = 186

 Score =  144 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 8/189 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  ++KACE + AG  I  PT+T++G+  D+ N  A++R+YE+K+R     ++  +   +
Sbjct: 2   TEDIKKACEVMAAGGIILYPTDTIWGIGCDATNEKAVQRVYELKRRTDNKAMLVLMDSEA 61

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            + ++   V  ++  L       PLT++    S  ++         +   R+    F+KK
Sbjct: 62  KLDRYVSDVPDIAWDLI-SVSDKPLTIIYS--SAKNLATNLLGADGSVGIRITNEEFSKK 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTIVNVQ 184
           L E +  PL   SAN SG+ S  N   + S  I + +  I+      +     S I+ + 
Sbjct: 119 LCERFRKPLVSTSANVSGEPSPANFSEV-SEVIKEGVDYIVSYRQDDMSKAAPSGIIKLG 177

Query: 185 CEKKVRILR 193
               V+++R
Sbjct: 178 AGGLVQVIR 186


>gi|302538419|ref|ZP_07290761.1| SUA5/YciO/YrdC/YwlC family protein [Streptomyces sp. C]
 gi|302447314|gb|EFL19130.1| SUA5/YciO/YrdC/YwlC family protein [Streptomyces sp. C]
          Length = 206

 Score =  144 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 4/183 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
             + L +G  IA PT++ + L     N   + R+  I+     +       + + + +  
Sbjct: 20  VVDSLRSGALIAYPTDSCFALGCQLGNRDGLARIRSIRNLDDKHHFTLVCQNFAQLGQFV 79

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            VD       K   PG  T +L   S      L     KT   R+P     + L+   G 
Sbjct: 80  YVDNDVFRAVKAATPGAYTFILKATSEVP-RQLMHPKKKTVGVRIPDHLVAQALLAELGE 138

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL   +     +         +   +   +  ++D G       +T+++        ILR
Sbjct: 139 PLVSSTLLLPDEDEPLTQGWEIKERLDHVVDAVVDSGDCGT-RPTTVIDFSGGG-AEILR 196

Query: 194 PGG 196
            G 
Sbjct: 197 RGA 199


>gi|325831973|ref|ZP_08165070.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. HGA1]
 gi|325486294|gb|EGC88746.1| Sua5/YciO/YrdC/YwlC family protein [Eggerthella sp. HGA1]
          Length = 202

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 8/201 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++ R+A   L  G  +  PTETVYGL V      +   LY++K+R    P+   V  + 
Sbjct: 5   SSSKREAVAALKRGEAVIFPTETVYGLGVSVEAAASPEALYDLKERDRGKPVSWLVGGVD 64

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKK 126
            + ++ A V  L+  LA+ +WPGPLTL+++          S A   +   R+P      +
Sbjct: 65  DLDRYGAHVPDLARRLARAYWPGPLTLIVEAGDAVPAAFRSAAG--SIGLRMPDNDTALE 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKE--IPLIIDGGISKIGLESTIVNVQ 184
           LIE  G PLA  SAN SG  +       L   +     + +  D    K G+ ST+++  
Sbjct: 123 LIEAVGCPLATTSANISGLQAPGAF-DALDPRLAARVGVVVPDDTDDDKSGVASTVLDCT 181

Query: 185 CEKKVRILRPGGLEIETLKRA 205
                RILR G +    ++  
Sbjct: 182 VN-PPRILREGAVAEADIRAV 201


>gi|91786903|ref|YP_547855.1| Sua5/YciO/YrdC/YwlC [Polaromonas sp. JS666]
 gi|91696128|gb|ABE42957.1| Sua5/YciO/YrdC/YwlC [Polaromonas sp. JS666]
          Length = 215

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 10/199 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++A   L  G   A+PT++ Y L     +  A   L  I+     + L     D+S + 
Sbjct: 17  LKQAVNLLARGGVAAVPTDSSYALVCHLDDKAAADSLRRIRGVDDKHHLTLLCRDLSELA 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
            +A VD     L K   PGP T +L+         LS  + KT   RVP   T + L+E 
Sbjct: 77  NYARVDNKQFRLLKAATPGPYTFILEASKEVP-RRLSHPSRKTIGLRVPGHKTLQALLEL 135

Query: 131 YGHPLAIPSANRSGQIS----ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC- 185
           +G PL   +    G  +      N    +   +  E+  +ID G       +T++++   
Sbjct: 136 HGAPLLATTLILPGPDNPPHEPLNDARDIRDQLEHELAAVIDAGACHQA-PTTVIDLTPM 194

Query: 186 --EKKVRILRPGGLEIETL 202
               +  ++R G  ++  L
Sbjct: 195 GEGGEPVVVRQGRGDLAAL 213


>gi|309800293|ref|ZP_07694466.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus infantis SK1302]
 gi|308116077|gb|EFO53580.1| Sua5/YciO/YrdC/YwlC family protein [Streptococcus infantis SK1302]
          Length = 159

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 5/148 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L+ G  + +PTETVYGL   + +  A+  +Y++K RP    L  +V+ +  + 
Sbjct: 2   MEKIKHELENGGAVVLPTETVYGLFAKALDKKAVDHVYQLKCRPRDKALNLNVASLDDIL 61

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     +NL T  FR+P    T +LI 
Sbjct: 62  NFSRNQPTYLQQLVESFLPGPLTIILE--ANDKVPYWVNSNLTTVGFRMPSHPVTLELIR 119

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSS 157
            +G PL  PSAN SGQ S    + IL  
Sbjct: 120 EFG-PLIGPSANISGQSSGVTFRKILHD 146


>gi|149640123|ref|XP_001515000.1| PREDICTED: similar to putative transmembrane protein TA-2
           [Ornithorhynchus anatinus]
          Length = 878

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 92/207 (44%), Gaps = 11/207 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  E +  G    IPT+TVY L      P A+ + Y  KK+    P+   +S + 
Sbjct: 613 ASSVKQIAEIMKNGGACGIPTDTVYVLVAACNRPDAVEKAYNTKKQAQDRPMSLWISSLR 672

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KTACFRVP-C 121
            ++       P+     +  WP P+++V+      D   L T+       ++   R+P C
Sbjct: 673 QLEPAKHLFHPILWDFMEAAWPSPISVVVPRGDWIDQLGLKTSARYVGTPRSIAIRIPDC 732

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  LI+  G P+A+ SAN +G+   T+   +  + +  ++  ++  G S   + ST+V
Sbjct: 733 SVTTHLIDLVG-PVAVTSANPTGEADTTHHDQVY-AKLGDKVDGVLCAGPSPENIASTVV 790

Query: 182 NVQC--EKKVRILRPGGLEIETLKRAI 206
           +        +   R G +    + + +
Sbjct: 791 DCTKIESGNIGFFRVGIVPKSQVLQIL 817


>gi|28867414|ref|NP_790033.1| SUA5/yciO/yrdC family domain-containing protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|81732976|sp|Q88B46|RIMN_PSESM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|28850648|gb|AAO53728.1| SUA5/yciO/yrdC family domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 185

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 4/187 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQNIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKLRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            + +     PL   SAN +G+ +  +   +       +I  ++ G +      S I ++ 
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQINGVLGGSLGGRRNPSVIRDIA 177

Query: 185 CEKKVRI 191
             + +R 
Sbjct: 178 TGQVMRA 184


>gi|324523357|gb|ADY48235.1| YrdC domain-containing protein [Ascaris suum]
          Length = 226

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 20/232 (8%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +TDS    AL +A   L++G  IA+PT+T+YGL+    N     +L+++K R  M 
Sbjct: 3   KIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNAD---KLFKLKFRSRMK 59

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P    +SD++ + K A +  + +H  +   PGP+TLV +   ++ +        +T   R
Sbjct: 60  PFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFNR--SSRLPAEFNEGHRTIGIR 116

Query: 119 VPCG-FTKKLIETYG-HPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGI--SK 173
           +P   F   L +  G  PLA  SAN SG   +  +V+      +   + LIIDG +    
Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVED--FEDLWPGVDLIIDGDVLKDP 174

Query: 174 IGL----ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221
            G      ST+VN+       I+R G     T +R     L    D  S+ +
Sbjct: 175 TGKVSRRGSTVVNLCIPGTYSIIRDGCARSSTEERLRDCGLTAITDGESSVR 226


>gi|257471545|ref|ZP_05635544.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|311086217|gb|ADP66299.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086794|gb|ADP66875.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087381|gb|ADP67461.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087878|gb|ADP67957.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 190

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 8/187 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N+L    + L     IA PTE+++GL  D  +  A+++L  +K R     LI   SD   
Sbjct: 8   NSLLYCIKMLHNDDVIAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQ 67

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
           +K + + + LS    K     WPGP T +L     T      T    T   RV   F   
Sbjct: 68  IKMYVNENILSNKQKKKIFFHWPGPFTFLLPAKPNT--PYWLTGKFNTVAVRVSAHFEII 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G  +   SAN S        + +      K+ PL ++G I      S I+N+  
Sbjct: 126 KLCNAFGQAVVSTSANISNMTPCFTSEEVFK-CFGKDFPL-LNGKIGNEKNPSKIINIIN 183

Query: 186 EKKVRIL 192
            K +R +
Sbjct: 184 GKLIRYV 190


>gi|94984865|ref|YP_604229.1| Sua5/YciO/YrdC/YwlC [Deinococcus geothermalis DSM 11300]
 gi|94555146|gb|ABF45060.1| Sua5/YciO/YrdC/YwlC [Deinococcus geothermalis DSM 11300]
          Length = 208

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 11/199 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + A+ +A E + AG  +  PTETV+GLA       A  RLY +K R    P+     D  
Sbjct: 12  AQAVARAAERVTAGGVVGYPTETVWGLAARL---EASERLYALKGREPDKPVQVSCLDEE 68

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
             ++       +       WPGPLTLVL   S      L+         RVP       L
Sbjct: 69  TARRLTEAG-AAFDALAGLWPGPLTLVLPASSACP-PDLAPGGW--VGLRVPDHPVALAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G  LA  S N SGQ +    +   +  +     L+ DGG    GL ST+V V  ++
Sbjct: 125 LRACGGLLATTSLNPSGQPAARTFEEAQAYGLAPL--LLPDGGFPAQGLASTVVRVVGDE 182

Query: 188 KVRILRPGGLEIETLKRAI 206
            + +LR G L ++ L+  +
Sbjct: 183 -LEVLREGALPVQLLRERL 200


>gi|332881939|ref|ZP_08449581.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680174|gb|EGJ53129.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 185

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 8/185 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  E L AG  I  PT+TV+G+  D+ N +A+ R++ IK+R     LI  VS I+M++ 
Sbjct: 5   QQITEILKAGGVILYPTDTVWGIGCDATNASAVARIFTIKQRSESKSLIILVSSITMLRD 64

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETY 131
           + +  P ++         P T++ +      +     A   T   R V   F +++I  +
Sbjct: 65  YIADLPQNILNYLQKVTEPTTIIYENP--QLLATNVIAADNTVAIRLVQDPFCQQMIAHF 122

Query: 132 GHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           G P+   SAN SGQ +      I   L +     +P   D    K    S ++      +
Sbjct: 123 GKPIVSTSANISGQPTPMCFADIPATLVAQCDYVVPYRQDDTAPK--KPSRLIKFDKNGE 180

Query: 189 VRILR 193
           + ILR
Sbjct: 181 LIILR 185


>gi|49081744|gb|AAT50272.1| PA0022 [synthetic construct]
          Length = 186

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 4/178 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  D  N  A+ RL  +K RP     I   ++I  +    
Sbjct: 10  AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGPIVVAANIHQLDFLL 69

Query: 75  SVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
              P          WPGP T ++       +    T    +   RV      + +     
Sbjct: 70  EDLPDVWLDRLAGTWPGPNTWLVPHQE--RLPEWVTGVHDSVAVRVTDHPLVQELCHLTG 127

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           PL   SAN +G+ +      +       E+  I+ G +      S I ++   + +R 
Sbjct: 128 PLISTSANPAGRPAARTRLRV-EQYFHDELDAILGGALGGRRNPSLIRDLVTGQVIRP 184


>gi|256823825|ref|YP_003147788.1| SUA5/yciO/yrdC domain-containing protein [Kangiella koreensis DSM
           16069]
 gi|256797364|gb|ACV28020.1| SUA5/yciO/yrdC domain protein [Kangiella koreensis DSM 16069]
          Length = 187

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 9/192 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+  +   +  A + +  G  IA PTE VYGL    +   AI+R+ +IK+RP    LI  
Sbjct: 1   MAYINPFKMHYAAQRIQQGGVIAYPTEAVYGLGCHPKAEQAIQRILKIKRRPWQKGLILV 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            S++  +K + S D  +  L   F      P+T +L + +  ++ PL     +    R+ 
Sbjct: 61  ASNVEQIKPYLSDDGKA--LISCFNEQHKRPVTWLLPVHA--EVSPLLRGTHEKIAVRLS 116

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              F K L +     L   SANR+GQ  +T  + +    +  E+ +II G        S+
Sbjct: 117 TNPFVKALCDAANSALVSTSANRAGQPEMTKAEQV-RCQMGSELDMIIVGPTGGHTRPSS 175

Query: 180 IVNVQCEKKVRI 191
           I++ Q  + +R 
Sbjct: 176 IIDAQTREVLRA 187


>gi|332883355|gb|EGK03638.1| Sua5/YciO/YrdC/YwlC family protein [Dysgonomonas mossii DSM 22836]
          Length = 187

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 89/190 (46%), Gaps = 8/190 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              ++KA E L +G  I  PT+T++G+  D+ N  A+ R+YE+K+R     LI  + +  
Sbjct: 2   EEDIKKAFEVLVSGGLILYPTDTIWGIGCDATNEEAVHRVYELKRRVDSKALITLLDNPI 61

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +  +    P ++  L +     PLT++ D     ++ P   A   +   R+    F+++
Sbjct: 62  KLDYYIDEVPSIAWDLIE-LSEKPLTIIYD--GARNVAPNLMAEDGSLAIRITKEKFSQE 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQ 184
           L + +   L   SAN SG+ +  N    +S  I + +  I+      +     S+I+ + 
Sbjct: 119 LCKRFRKALVSTSANISGEPAPANFDD-ISEEIKQGVDYIVKYRQDDTNKSKASSIIKLG 177

Query: 185 CEKKVRILRP 194
              +V+I+R 
Sbjct: 178 KTGEVKIIRE 187


>gi|254447533|ref|ZP_05060999.1| Sua5/YciO/YrdC family protein [gamma proteobacterium HTCC5015]
 gi|198262876|gb|EDY87155.1| Sua5/YciO/YrdC family protein [gamma proteobacterium HTCC5015]
          Length = 175

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 8/179 (4%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
              L  G  +A PTE V+GL  D R   A+R++  +K+RP    LI   ++I  +     
Sbjct: 2   IAALQRGEVVAYPTEAVFGLGCDPRQELAVRQVLRLKQRPEEKGLILIAAEIDQLDHWLD 61

Query: 76  VDPLSLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYG 132
           +D ++     +   WPGP+T +L    +T          +T   RV       +L   +G
Sbjct: 62  MDAVTEQWPHVLERWPGPVTWLLPCRPST--PRWLRGQFETLAVRVTAHPQAAQLCRDFG 119

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             L   SAN +G     + + +          +  +G +      STI++ Q ++ +R 
Sbjct: 120 GALVSTSANPAGLEPARSPQAVADYFPDM---VCAEGEVDVSAQPSTILDAQTQRVIRP 175


>gi|50954445|ref|YP_061733.1| translation factor [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950927|gb|AAT88628.1| translation factor [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 232

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 89/211 (42%), Gaps = 16/211 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R A   +  G  + IPT+TVYG+A D+ +P A++RL + K R   +P    V  ++ 
Sbjct: 15  TGMRLARGAIGRGELVVIPTDTVYGVAADAFSPAAVQRLLDAKGRGRQSPPPVLVPGLAA 74

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +   A  V      L + FWPG LT+VL            T+   T   R+P       +
Sbjct: 75  LAALAERVPAEVEALVEAFWPGGLTIVLPAAPLLVWGLGETSG--TVALRMPQDRIALEL 132

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--------STI 180
                PLA+ SAN SG+ +           +   + + +DGG +    +        STI
Sbjct: 133 LAETGPLAVSSANLSGRPAARTAVEA-EGMLGDAVAVYLDGGEAGSAYDRVEGRDSSSTI 191

Query: 181 VNVQ----CEKKVRILRPGGLEIETLKRAIS 207
           ++          +RILR G +  E L+    
Sbjct: 192 LDATALASGSGGLRILRHGVVTAERLRAVAG 222


>gi|298346219|ref|YP_003718906.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 43063]
 gi|304390018|ref|ZP_07371972.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298236280|gb|ADI67412.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 43063]
 gi|304326500|gb|EFL93744.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 215

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 22/221 (9%)

Query: 1   MQIMSI-------TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53
           M+I+         TD   +  A         + +PT+TVYG+A     P A+ RL   K 
Sbjct: 1   MKIIDALTGPITQTDLAVIDAAV---KRDELLVMPTDTVYGIASVPFAPVAVSRLQNAKG 57

Query: 54  RPAMNPLICHVSDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIH 105
           R    P    VS  + ++   + +P         +  LA+ FWPG LT+++         
Sbjct: 58  RGEDFPPPVLVSGPAALEDLMAPEPQASASQRRAARLLAERFWPGALTIIVTANPALGWD 117

Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
              T    T   R P       I  Y  PLA+ SAN   +   T++    +    + + +
Sbjct: 118 LGQT--HGTIALRQPDHPRALEILRYTGPLAVTSANLHTRPPATDIAAATN-YFGERVSV 174

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            +D G+S  G  STIV +  +   R+LR G + +  +  A+
Sbjct: 175 YVDAGVSPSGHPSTIVRLTQDSP-RLLRQGDIPLSDILAAL 214


>gi|315657274|ref|ZP_07910156.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491746|gb|EFU81355.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 215

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 22/221 (9%)

Query: 1   MQIMSI-------TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53
           M+I+         TD   +  A         + +PT+TVYG+A     P A+ RL   K 
Sbjct: 1   MKIIDALTGPITQTDLAVIDAAV---KRDELLVMPTDTVYGIASVPFAPVAVSRLQNAKG 57

Query: 54  RPAMNPLICHVSDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIH 105
           R    P    VS  + ++   + +P         +  LA+ FWPG LT+++         
Sbjct: 58  RGEDFPPPVLVSGPAALEDLMAPEPQASASQRRAARLLAERFWPGALTIIVTANPALGWD 117

Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
              T    T   R P       I  Y  PLA+ SAN   +   T++    +    + + +
Sbjct: 118 LGQT--HGTIALRQPDHPRALEILRYTGPLAVTSANLHTRPPATDIAAATN-YFGERVSV 174

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
            +D G+S  G  STIV++  +   R+LR G + +  +  A+
Sbjct: 175 YVDAGVSPSGHPSTIVSLTQDSP-RLLRQGDIPLSDILAAL 214


>gi|153206741|ref|ZP_01945582.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918501|ref|ZP_02218587.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334]
 gi|212218383|ref|YP_002305170.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154]
 gi|120577104|gb|EAX33728.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165917747|gb|EDR36351.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 334]
 gi|212012645|gb|ACJ20025.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuK_Q154]
          Length = 204

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 8/207 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + I   N     +++A E +  G  +A  T++ Y L     N +   R+  +++   
Sbjct: 1   MATIHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCRLGNKSGAERIRRLRQLNK 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +P      D+S +  +A +        K   PGP T +L          L     KT  
Sbjct: 61  AHPFTLLCRDLSEIAVYARIANPVFRFLKAHTPGPYTFILSATRAVP-RQLQHPKRKTIG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + ++E    PL   +    G+    +        +  ++ LI+D G+  + 
Sbjct: 120 IRVPDHRVIQAILEQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVCGV- 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202
             +T++++  + +  ILR G  +I  +
Sbjct: 179 EPTTVIDL-VDGEPTILREGKGDISEI 204


>gi|152988004|ref|YP_001345419.1| hypothetical protein PSPA7_0023 [Pseudomonas aeruginosa PA7]
 gi|212288212|sp|A6UX84|RIMN_PSEA7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|150963162|gb|ABR85187.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 185

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 4/178 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   +  G  IA PTE V+GL  D  N  A+ RL  +K RP    LI   + I  +    
Sbjct: 10  AARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAAHIHQLDFLL 69

Query: 75  SVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
              P          WPGP T ++       +    T    +   RV      + +     
Sbjct: 70  EDLPDVWLERLAGTWPGPNTWLVPHQD--RLPEWVTGVHDSVAVRVTDHPLVQELCYLTG 127

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           PL   SAN +G+ +      +       E+  ++ G +      S I ++   + +R 
Sbjct: 128 PLISTSANPAGRPAARTRLRV-EQYFHDELDGVLGGALGGRRNPSLIRDLVTGQVIRP 184


>gi|145340914|ref|XP_001415562.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575785|gb|ABO93854.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 195

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 6/196 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  IA+PT+T+YG A  + N  A+RRLYEIK R A  PL   V D+  V  + 
Sbjct: 1   AAAALRRGGVIAVPTDTIYGFAASAANGDAVRRLYEIKGRRAGVPLAIAVGDVRDVGTYG 60

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH--PLSTANLKTACFRVPCG-FTKKLIETY 131
               L         PGP T++L           P     +     RVP   F +++   +
Sbjct: 61  DDGHLREGALARLLPGPTTVLLRRRRGDAGRATPELNPGVDLIGIRVPAHDFVREVCRAH 120

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVR 190
           G  +A+ SANRSG+ S T  +    + +      + DGG I    L STIV++       
Sbjct: 121 GGAIALTSANRSGETSATAAEE--FAELWDACDEVFDGGAIPAKRLGSTIVDLSSRANDF 178

Query: 191 ILRPGGLEIETLKRAI 206
            +   G   + L R +
Sbjct: 179 AIVRAGERCDELVRVL 194


>gi|221135276|ref|ZP_03561579.1| Sua5/YciO/YrdC family protein [Glaciecola sp. HTCC2999]
          Length = 188

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 66/191 (34%), Gaps = 8/191 (4%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M       L +     + G  I  PTE V+GL  D     A+  +  IK RP    LI  
Sbjct: 1   MITIPPVELEQFISAFEQGEVIGYPTEAVFGLGCDPDIADAVNNVLAIKTRPQDKGLILI 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +    +  +  +  L   +       WPGP T ++    TT      T    T   RV 
Sbjct: 61  AATFEQLLPYIDISELEPEIINKVHATWPGPYTWIMPKAKTT--PDYLTGGRNTIAVRVS 118

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  L      PL   SAN SG+     ++ I   +   +    IDG +      S 
Sbjct: 119 AHPTVIALCNAVNKPLVSTSANPSGETPARTLEQI--KTYFADTIFAIDGEVDHNAQPSK 176

Query: 180 IVNVQCEKKVR 190
           I +    K +R
Sbjct: 177 IQDAVTGKVLR 187


>gi|148235871|ref|NP_001082069.1| putative transmembrane protein TA-2 [Xenopus laevis]
 gi|12007284|gb|AAG45109.1|AF310008_1 putative transmembrane protein TA-2 [Xenopus laevis]
          Length = 912

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 11/208 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T ++++R+  E +  G    IPT+TVY L      P A+ + Y+ K++    P+   +S 
Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
           +  +        PL        WP  ++LV+      ++             ++   R+P
Sbjct: 691 LEQLASAKHLFSPLLWDFMHKAWPSSISLVIPRGPWLEVLGAKESSKYIGTPQSIAIRIP 750

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C  T  LI+  G P+A+ SAN SG+   T+   +  + +  ++  ++  G S   + ST
Sbjct: 751 DCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVDGVLCDGPSPENIAST 808

Query: 180 IVNVQ--CEKKVRILRPGGLEIETLKRA 205
           +V+        +   R G +    + + 
Sbjct: 809 VVDCTKIDSGNLGFFRVGIVPKSQVLQI 836


>gi|297196275|ref|ZP_06913673.1| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486]
 gi|297153146|gb|EDY66899.2| translation factor SUA5 [Streptomyces pristinaespiralis ATCC 25486]
          Length = 206

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 4/193 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    + + +G  +A PT++ + L     +   I R+  I+     +       + + + 
Sbjct: 17  ISTVADSIRSGALVAYPTDSCFALGCRLGSRDGIGRIRSIRNLDDRHHFTLVCQNFAQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +   VD       K   PG  T +L          L     KT   R+P     + L+  
Sbjct: 77  QFVQVDNDVFRAIKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVAQALVAE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   +     +         +   +   +  ++D G       +T+++    +   
Sbjct: 136 LGEPLLSSTLLMPDEDEPMTQGWEIKERLDHVVDAVVDSGDCGT-EPTTVIDFSGAEP-E 193

Query: 191 ILRPGGLEIETLK 203
           I+R G  +    +
Sbjct: 194 IVRRGAGDPSRFE 206


>gi|304389436|ref|ZP_07371399.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315656683|ref|ZP_07909570.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|304327246|gb|EFL94481.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315492638|gb|EFU82242.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 207

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 8/207 (3%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I  +   N    +LR+  E +  G  +A PT++ Y L     N   + R+ +I++    
Sbjct: 4   KIFELHPENPQARSLRQIVEIIQDGGIMAYPTDSGYALGCALANGAGLERIRKIRQLDDK 63

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +       D S + +   V      L K   PGP T +L          L+     T   
Sbjct: 64  HHFTLVCHDFSQLGQLVMVSNSQYRLIKSLTPGPYTFILKGTKEVPRATLNKKKH-TVGV 122

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+P       L+E  G  +   +    G     +    + + +   + +I+D  I     
Sbjct: 123 RIPAHKVALSLVEAMGEAILSCTLLLPGDAEPLSDPVEVIAKLGHLLDVIVDSPIGSD-Q 181

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
            +T++N++ +  + + R G   ++ L+
Sbjct: 182 ATTVINMEDDVPI-VTREGAGPVDFLE 207


>gi|34496005|ref|NP_900220.1| Sua5/YciO/YrdC family protein [Chromobacterium violaceum ATCC
           12472]
 gi|81656937|sp|Q7P0L7|RIMN_CHRVO RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|34101858|gb|AAQ58226.1| probable Sua5/YciO/YrdC family protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 193

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 6/180 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A + L  G  IA  TE+ YGL     +  AIRR+  IK RP    LI   +D   ++ 
Sbjct: 18  QRARKQLRDGGVIAYSTESCYGLGCRPLDARAIRRVLAIKARPNHKGLIVIAADFEQIRH 77

Query: 73  HASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIET 130
                  +       +WPGP T +L   ++  + P           RV        L   
Sbjct: 78  LVKPLSAAQRAELARYWPGPYTFLLP--ASRRVPPALRGRHHKIAVRVTAHGEAAALCRR 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  L   SANR+GQ S+   +    +   K   L + G I K    STI++++  + +R
Sbjct: 136 LGTALVSTSANRAGQQSLKTARACRMAFKDK--VLTLPGRIGKRRKPSTIIDLESGRVLR 193


>gi|315654803|ref|ZP_07907708.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333]
 gi|315490764|gb|EFU80384.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus curtisii ATCC 51333]
          Length = 215

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 22/222 (9%)

Query: 1   MQIMSI-------TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53
           M+I+         TD   +  A         + +PT+TVYG+A     P A+ RL   K 
Sbjct: 1   MKIIDALTGPITQTDLAVIDAAV---KRDELLVMPTDTVYGIASVPFAPVAVSRLQNAKG 57

Query: 54  RPAMNPLICHVSDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIH 105
           R    P    VS  + ++   + +P         +  LA+ FWPG LT+++         
Sbjct: 58  RGEDFPPPVLVSGPAALEDLMAPEPQASASQRRAARVLAERFWPGALTIIVTANPALGWD 117

Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
              T    T   R P       I  Y  PLA+ SAN   +   T++    +    + + +
Sbjct: 118 LGQT--HGTIALRQPDHPRALEILRYTGPLAVTSANLHTRPPATDIAAATN-YFGERVSV 174

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
            +D G+S  G  STIV++  +   R+LR G + +  +  A++
Sbjct: 175 YVDAGVSPSGHPSTIVSLTQDSP-RLLRQGDIPLSDILAALA 215


>gi|313669306|ref|YP_004049590.1| hypothetical protein NLA_20420 [Neisseria lactamica ST-640]
 gi|313006768|emb|CBN88238.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 200

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   SL  + +  WP P T +L    +  +  L          R+
Sbjct: 72  IVIGNQFEQLQPLLQMPSESLQAMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRI 130

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +  G PL   S NR+G+ +    + +           I+ G I +    S
Sbjct: 131 PDHAGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 189 QIIDGETGKRLR 200


>gi|261378564|ref|ZP_05983137.1| protein RimN [Neisseria cinerea ATCC 14685]
 gi|269145118|gb|EEZ71536.1| protein RimN [Neisseria cinerea ATCC 14685]
          Length = 200

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFPRIIAASAQRKLRVYLKKGGLVAYPTESCYGLGCLPTLANALSKLTHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   +L  +    WP P T +L L  +  +  L          RV
Sbjct: 72  IVIGNQFEQLRPLLKMPSENLQNILIKEWPAPKTFLL-LAKSGVLPKLRGKRRNKLAVRV 130

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +  G PL   S NR+G+ +    + +           +I G I +  L S
Sbjct: 131 PDHDGARRLCQVLGMPLVSTSCNRAGKRACRTEREVKRQF--GRNVWVIGGRIGRQKLPS 188

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 189 QIIDGETGKRLR 200


>gi|296160300|ref|ZP_06843118.1| SUA5/yciO/yrdC domain protein [Burkholderia sp. Ch1-1]
 gi|295889511|gb|EFG69311.1| SUA5/yciO/yrdC domain protein [Burkholderia sp. Ch1-1]
          Length = 203

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 11/194 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +  A   L  G  + +PT+T Y  A D  N  A  RLYEIKKR    PL   VS    + 
Sbjct: 4   IEHAATILKNGGVLMVPTDTNYAFAADPWNVEACARLYEIKKRDVKKPLTLFVSRPEDLW 63

Query: 72  KHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKK 126
            +A V          L    WPGPL  VL        HP L   ++   C R        
Sbjct: 64  VYAEVPDAQTEAVNSLMARHWPGPLNFVLKKSPAAPNHPYLKEDSISVVCNR--NPVLNG 121

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSS-ICKEIPLIIDGG--ISKIGLESTIVNV 183
           LI  +G PLA+ SAN SG    + + + L+S      +  I+  G  + +    STI+++
Sbjct: 122 LINLFGRPLAMTSANVSGVEHDSLIDYELASRTFPDAVDYIVPPGGMVPQTTRSSTIISL 181

Query: 184 QCEKKVRILRPGGL 197
             +  +++LR G +
Sbjct: 182 L-DGTLKVLRQGDV 194


>gi|296131063|ref|YP_003638313.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM
           20109]
 gi|296022878|gb|ADG76114.1| Sua5/YciO/YrdC/YwlC family protein [Cellulomonas flavigena DSM
           20109]
          Length = 205

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++ +    L     IA PT+++Y L     N     R+  I+     +       D +
Sbjct: 14  PRSIAQVVAMLRDDAVIAYPTDSMYALGTRLGNHDGAERIRRIRNLDDRHHFTLVCCDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            + +   +D  +    K   PGP T +L          L+    ++   R+P       +
Sbjct: 74  QLGQLVHLDNSAFRAIKSATPGPYTFILPATPEVP-RRLAHPKKRSVGVRIPDDPVALAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S    G     +    +   +   +  ++D G  +    +T+V+   + 
Sbjct: 133 LRELGEPLVSSSLLVPGHDWPMSEGWQIKEELDDVLDAVVDAG-DRGSEPTTVVDWT-DG 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 APEVVREGA 199


>gi|313885913|ref|ZP_07819653.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924668|gb|EFR35437.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 195

 Score =  142 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 6/187 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A+R+A + L  G  I  PT+T++GL  D+ N  A+ RL  +K RP   P++  V     
Sbjct: 12  SAVREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDVR 71

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           ++ +    P            PLT++       ++ P   A+  +   R+      +++ 
Sbjct: 72  IQSYVRTVPSMAFQLIDVAVRPLTIIYP--EGRNVAPQLLADDGSIGIRIASDTLCQEIC 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCE 186
                PL   SAN +G  S  N    +  ++ K +  ++     +   G+ S I+ +   
Sbjct: 130 RMLRRPLVSTSANLAGTSSPHNYSE-IDPALIKMVDYVVPLRQDEHIDGMPSDIIKLGIN 188

Query: 187 KKVRILR 193
            +VR++R
Sbjct: 189 NEVRVIR 195


>gi|190576014|ref|YP_001973859.1| hypothetical protein Smlt4185 [Stenotrophomonas maltophilia K279a]
 gi|212288232|sp|B2FIS1|RIMN_STRMK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|190013936|emb|CAQ47576.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 186

 Score =  142 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L AG  IA PTE V+GL  D  +  A+  +  +K+RP    +I   +D++ ++
Sbjct: 6   LDSAVATLRAGGVIAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAADLAQLE 65

Query: 72  KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
                  +           WPG  T +L         P  T        R+       +L
Sbjct: 66  GWVRLQALPDARQRAVLASWPGANTWILPAGPRAQ--PWVTGEHSGIAVRISAHPLVAEL 123

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+      +  L   + + +  I+DG    +   + I +     
Sbjct: 124 CRAWGGPLVSTSANLAGEPPARR-REELDPRLLRLLDGILDGETGGLAQPTPIRDALSGN 182

Query: 188 KVRI 191
            +R 
Sbjct: 183 VLRS 186


>gi|29654232|ref|NP_819924.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493]
 gi|154706053|ref|YP_001424357.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161829815|ref|YP_001596797.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331]
 gi|29541498|gb|AAO90438.1| sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 493]
 gi|154355339|gb|ABS76801.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii Dugway
           5J108-111]
 gi|161761682|gb|ABX77324.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii RSA 331]
          Length = 204

 Score =  142 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 8/207 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + I   N     +++A E +  G  +A  T++ Y L     N +   R+  +++   
Sbjct: 1   MATIHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNK 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +P      D+S +  +A +        K   PGP T +L          L     KT  
Sbjct: 61  AHPFTLLCRDLSEIAVYARIANPVFRFLKAHTPGPYTFILSATRAVP-RQLQHPKRKTIG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + ++E    PL   +    G+    +        +  ++ LI+D G+  + 
Sbjct: 120 IRVPDHRVIQAILEQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVCGV- 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202
             +T++++  + +  ILR G  +I  +
Sbjct: 179 EPTTVIDL-VDGEPTILREGKGDISEI 204


>gi|304309712|ref|YP_003809310.1| putative translation factor (SUA5) [gamma proteobacterium HdN1]
 gi|301795445|emb|CBL43643.1| putative translation factor (SUA5) [gamma proteobacterium HdN1]
          Length = 193

 Score =  142 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 9/190 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L +A + L  G  IA PTE V+GL+ D  NP A++R+ ++K+R     L+   ++  
Sbjct: 5   TSRLPQAVKILHEGGVIACPTEAVWGLSCDPFNPMAVQRILDLKQRDPSKGLLLVAANEQ 64

Query: 69  MVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            +    A + P+ L   +  WPGP T ++       + P    N      R+       +
Sbjct: 65  AIAPLLAHLAPVLLERLRAHWPGPFTFLIPD-PQNWVPPYVKGNHPHVAVRISAHPLVHR 123

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC-----KEIPLIIDGGISKIGLESTIV 181
           L E +G PL   SAN+ G     + +  L + +       + P I+ G        + I+
Sbjct: 124 LCEAFGGPLVSTSANQQGAPPARS-ETDLRNWLNTLENTADRPHILPGSTGGQTNPTRII 182

Query: 182 NVQCEKKVRI 191
           ++   + VR 
Sbjct: 183 DLMSGETVRP 192


>gi|283850258|ref|ZP_06367547.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. FW1012B]
 gi|283574284|gb|EFC22255.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. FW1012B]
          Length = 212

 Score =  142 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 10/203 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L  A   L  G  +  PTET + L   + +  A+ R+  IK RPA  PL   V +++ +
Sbjct: 5   SLATAARVLSQGGCLVYPTETFFALGALATHAGALARIVAIKARPATKPLPLLVGELAHL 64

Query: 71  KKHASVDPLS-------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCG 122
           ++      L          LA  FWPGPL+LV+      ++  L          R  P  
Sbjct: 65  ERIVPDGFLDGPLGEDFRALAGRFWPGPLSLVVPCRE--ELPGLVKDGQGRVSVRWTPHP 122

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               L    G  +   SAN SG+      + +  + +     L+ +G     G  ST++ 
Sbjct: 123 TAAALCRLAGGAIVATSANVSGKPPAARAEDLDPAVVSAADGLVTEGPRPSGGQASTVIG 182

Query: 183 VQCEKKVRILRPGGLEIETLKRA 205
           +   +++ + R G + + TL+ A
Sbjct: 183 LLGGRRLVLFRDGAVAVATLRAA 205


>gi|83642946|ref|YP_431381.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396]
 gi|123535430|sp|Q2SQW8|RIMN_HAHCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|83630989|gb|ABC26956.1| putative translation factor (SUA5) [Hahella chejuensis KCTC 2396]
          Length = 184

 Score =  142 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 67/181 (37%), Gaps = 5/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++KA   L  G  +A PTE V+GL  D     A+ R+ ++K+RP    LI     I    
Sbjct: 6   IQKAVSVLSRGGVLAYPTEAVWGLGCDPSCEDAVNRILQLKRRPWRKGLILVSGQIEHFS 65

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +    +           WPGP+T V+         PL          RV       +L +
Sbjct: 66  QLLDRLPQQQKDQILATWPGPVTWVVPDPGVY--APLVRGAHDAIAIRVTAHPLVVELTK 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+   SAN + +     +           +   + G +S +   S I +      +
Sbjct: 124 AFGGPIVSTSANPATREPARTLFDC-RRYFKSGVDHYLPGKLSGLSKPSQIRDAATGAIL 182

Query: 190 R 190
           R
Sbjct: 183 R 183


>gi|256424924|ref|YP_003125577.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588]
 gi|256039832|gb|ACU63376.1| Sua5/YciO/YrdC/YwlC family protein [Chitinophaga pinensis DSM 2588]
          Length = 189

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 8/189 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            N +  + + L +G  I  PT+T++G+  D+ +  A+++++ +K RP    L+  ++D+ 
Sbjct: 5   ENDISASLQVLRSGGLILYPTDTIWGIGCDATDEAAVKKVFTLKDRPEAKSLVILLADVR 64

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
            + K+ A   P    +   F   P T++ +     D+ P    +  T   R V   F + 
Sbjct: 65  DLLKYVAHPSPEIADILAGF-DRPTTVIYE--GALDLAPNVINSDGTVAIRIVKDTFCRH 121

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQ 184
           LI+    PL   SAN SGQ S      +    I   +  ++            S I+ + 
Sbjct: 122 LIKRLRKPLVSTSANLSGQPSPATFAEVSPEIING-VDYVVSYRQDDTTPAQASRIIKLL 180

Query: 185 CEKKVRILR 193
            +  V+++R
Sbjct: 181 KDGSVQVIR 189


>gi|15835032|ref|NP_296791.1| hypothetical protein TC0414 [Chlamydia muridarum Nigg]
 gi|270285197|ref|ZP_06194591.1| hypothetical protein CmurN_02078 [Chlamydia muridarum Nigg]
 gi|270289216|ref|ZP_06195518.1| hypothetical protein CmurW_02138 [Chlamydia muridarum Weiss]
 gi|301336593|ref|ZP_07224795.1| hypothetical protein CmurM_02130 [Chlamydia muridarum MopnTet14]
 gi|7190456|gb|AAF39270.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 280

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 16/198 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  E + +G   A PT+TVYGL V    P A ++L+ +K+R     L  +VS +  ++
Sbjct: 2   LSQHIERIRSGQVFAFPTDTVYGLGVSFLIPEADKQLFALKRRNPQKALSVYVSSLEELE 61

Query: 72  KHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
             A   +   S+ +A+ F PGPLTL+         H     + KT  FR V     K++I
Sbjct: 62  YVAQRRLGEASIKIAQKFLPGPLTLITK-------HNNPRFSQKTLGFRIVEHPIVKQII 114

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G PL   SAN SG  S  +   +      K+I +I   G   IGLEST+V+   E++
Sbjct: 115 QEVG-PLLATSANVSGFPSAVSSDEVKQDFPEKDILVI--SGTCSIGLESTVVDA--EER 169

Query: 189 VRILRPGGLEIETLKRAI 206
           + I R G +    ++  +
Sbjct: 170 I-IYREGVVSAAEIEDVL 186


>gi|313159480|gb|EFR58843.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes sp. HGB5]
          Length = 193

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 8/186 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A   + AG  I  PT+TV+GL  D+ N  A+ R+Y++K+      ++   +   MV +
Sbjct: 12  DEAVRVMKAGGIILYPTDTVWGLGCDATNAEAVERIYKLKRSENKKSMLVLCASADMVVR 71

Query: 73  HASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + +  P ++  + +L    PLT +L   +   +        +T   R+P   F ++++  
Sbjct: 72  YVNKAPGIAFEVMELAT-SPLTAILPGAA--GVAENLIPEERTLGVRIPDHEFCRRILRG 128

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KIGLESTIVNVQCEKK 188
            G P+   SAN SG+ +   +  +    I   +  +++           S+I+      +
Sbjct: 129 LGRPVVSTSANISGEATPAGLAEVSREIIDG-VDFVVNPRFEGKPTKKASSIIAFGEGGE 187

Query: 189 VRILRP 194
           V+I+R 
Sbjct: 188 VKIIRE 193


>gi|152994766|ref|YP_001339601.1| SUA5/yciO/yrdC domain-containing protein [Marinomonas sp. MWYL1]
 gi|212288210|sp|A6VT87|RIMN_MARMS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|150835690|gb|ABR69666.1| SUA5/yciO/yrdC domain [Marinomonas sp. MWYL1]
          Length = 185

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 5/184 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            ++ +  + +  G  IA PTE V+GL  D  N +A+RR+  +K RP    LI        
Sbjct: 5   TSVEELADIIRQGGVIAYPTEAVWGLGCDPFNESAVRRILTLKSRPESKGLILVAGAQEE 64

Query: 70  VKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +    + +D  +          P + V+    TT          ++   R+      ++L
Sbjct: 65  LSPWLNLLDDKAAQRLISLNETPTSWVVP--DTTITPSWVRGEHQSVAIRLSQHQPVQRL 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +   +   SAN +G     + K +        I  I D  +      S + ++  + 
Sbjct: 123 CAAFQGVIVSTSANPAGLEPAMSAKEV-HQYFGCNIDAIFDAPLGDASQPSQVRDILTDN 181

Query: 188 KVRI 191
             R 
Sbjct: 182 LFRA 185


>gi|15617088|ref|NP_240301.1| hypothetical protein BU494 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681840|ref|YP_002468226.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|219682395|ref|YP_002468779.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|11387305|sp|P57561|RIMN_BUCAI RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|25305375|pir||C84987 hypothetical protein [imported] - Buchnera sp. (strain APS)
 gi|10039153|dbj|BAB13187.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219622128|gb|ACL30284.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624683|gb|ACL30838.1| dsRNA-binding protein, putative ribosome maturation factor (YrdC)
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 175

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L     IA PTE+++GL  D  +  A+++L  +K R     LI   SD   +K + + +
Sbjct: 1   MLHNDDVIAYPTESMFGLGCDPNSKKAVKKLLNLKNRSIEKGLILVASDFDQIKMYVNEN 60

Query: 78  PLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGH 133
            LS    K     WPGP T +L     T      T    T   RV   F   KL   +G 
Sbjct: 61  ILSNKQKKKIFFHWPGPFTFLLPAKPNT--PYWLTGKFNTVAVRVSAHFEIIKLCNAFGQ 118

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            +   SAN S        + +      K+ PL ++G I      S I+N+   K +R +
Sbjct: 119 AVVSTSANISNMTPCFTSEEVFK-CFGKDFPL-LNGKIGNEKNPSKIINIINGKLIRYV 175


>gi|297538007|ref|YP_003673776.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301]
 gi|297257354|gb|ADI29199.1| Sua5/YciO/YrdC/YwlC family protein [Methylotenera sp. 301]
          Length = 207

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 4/181 (2%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            E L  G  IA PT++ Y L     +  A  R+ +I+     +       ++S +  +A 
Sbjct: 21  AEILRDGGVIAYPTDSGYALGCMLGHGDAQTRIRQIRGVDDKHLFTLLCRNLSELGNYAV 80

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHP 134
           V      L K   PG  T +L+         L      T   RVP     + ++E    P
Sbjct: 81  VSNSQFRLLKANTPGAYTFILNATREVP-RKLQHPKRNTVGLRVPDHAVVQAILEEIDAP 139

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           L   +     + S+ +    +   +   + L+ID G    G  S ++N+  +    ++R 
Sbjct: 140 LLSMTLYIPDEDSVLSEAWEIRDKLEHVVDLVIDVGHCVAGATS-VINLTGDAP-ELIRE 197

Query: 195 G 195
           G
Sbjct: 198 G 198


>gi|213626671|gb|AAI69844.1| LOC398207 protein [Xenopus laevis]
          Length = 912

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 11/208 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T ++++R+  E +  G    IPT+TVY L      P A+ + Y+ K++    P+   +S 
Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
           +  +        PL     +  WP  ++LV+      ++             ++   R+P
Sbjct: 691 LEQLASAKHLFSPLLWDFMQKAWPSSISLVIPRGPWLEVLGAKESSKYIGTPQSIAIRIP 750

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C  T  LI+  G P+A+ SAN SG+   T+   +  + +  ++  ++  G S   + ST
Sbjct: 751 DCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVNGVLCDGPSPENIAST 808

Query: 180 IVNVQ--CEKKVRILRPGGLEIETLKRA 205
           +V+        +   R G +    + + 
Sbjct: 809 VVDCTKIDSGNLGFFRVGIVPKSQVLQI 836


>gi|213626209|gb|AAI69842.1| Unknown (protein for MGC:196569) [Xenopus laevis]
          Length = 912

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 11/208 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           T ++++R+  E +  G    IPT+TVY L      P A+ + Y+ K++    P+   +S 
Sbjct: 631 TRTSSVRQIAEIMKNGGICGIPTDTVYVLVAACNQPDAVEKAYKTKRQAQDRPMSLWISS 690

Query: 67  ISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP 120
           +  +        PL     +  WP  ++LV+      ++             ++   R+P
Sbjct: 691 LEQLASAKHLFSPLLWDFMQKAWPSSISLVIPRGPWLEVLGAKESSKYIGTPQSIAIRIP 750

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            C  T  LI+  G P+A+ SAN SG+   T+   +  + +  ++  ++  G S   + ST
Sbjct: 751 DCTVTTHLIDMVG-PIAVTSANPSGEADTTHHNQVF-AKLGDKVNGVLCDGPSPENIAST 808

Query: 180 IVNVQ--CEKKVRILRPGGLEIETLKRA 205
           +V+        +   R G +    + + 
Sbjct: 809 VVDCTKIDSGNLGFFRVGIVPKSQVLQI 836


>gi|56755217|gb|AAW25788.1| SJCHGC02454 protein [Schistosoma japonicum]
          Length = 268

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 36/216 (16%)

Query: 2   QIMSITDSNA-LRKACEFLDAG-LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +I+++ D++  L    + +  G   IA+PT+TVYGLA    N  +I R+  IK R    P
Sbjct: 20  KIITLKDASLNLNTIVQLISHGCGVIALPTDTVYGLACSVYNTESIERIRHIKGRSETKP 79

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL---STANLKTAC 116
           +   +  +S +        +   L     PGP+T++L         PL        +   
Sbjct: 80  MAICLDQVSHISHWCDTKNIPTGLLSDLLPGPVTVLLPRFPDKLQDPLNCHLNPGERRVG 139

Query: 117 FRVPC-GFTKKLIETY------------------GHPLAIPSANRSGQISITNVKHILSS 157
            R+P  GF +KLI                     GHPL + SAN SGQ S   ++    S
Sbjct: 140 IRIPDSGFIRKLISALHEQTKLSSTSGNDEYSGGGHPLVLTSANLSGQPSAIQIEE--FS 197

Query: 158 SICKEIPLIIDGGISKIGLE----------STIVNV 183
            I   I LI++GG  +  L           STI+++
Sbjct: 198 EIWPSIDLIVNGGPIQPSLPSVNLDYNRSGSTIIDL 233


>gi|152967951|ref|YP_001363735.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans
           SRS30216]
 gi|151362468|gb|ABS05471.1| Sua5/YciO/YrdC/YwlC family protein [Kineococcus radiotolerans
           SRS30216]
          Length = 206

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +    L     IA PT++ Y L     + T   R+  I++    +      +D +
Sbjct: 14  ARSIAQLAAVLREDGLIAYPTDSCYALGCRLDSHTGADRIRRIRQLGEKHHFTLVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D +     K   P P T +L           + A  KT   R+P   F + L
Sbjct: 74  QLSQFVHLDNVQFRAIKAATPNPYTFILPATKEVP-RRFAHAKKKTVGVRIPDHRFVRAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G          +   +   +  ++D G       +T+V+     
Sbjct: 133 LTELGEPLLSSTLLLPGHEDPPTDGWSIKEELDHVVDAVVDAGECGTS-PTTVVDWSGGF 191

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +    +
Sbjct: 192 P-DVVRVGAGDPSRFE 206


>gi|182434095|ref|YP_001821814.1| hypothetical protein SGR_302 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326774619|ref|ZP_08233884.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|178462611|dbj|BAG17131.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326654952|gb|EGE39798.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 206

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +    + + +G  +A PT++ Y L     N  A+ R+  I+     +       D +
Sbjct: 14  PRTISTVVDSIRSGALVAYPTDSCYALGCQLGNRDALGRIRSIRNLDDKHHFTLVCHDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   VD       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 74  QLSQFVRVDNDVFRAVKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +  E+  +ID G     L +T+++   ++
Sbjct: 133 VAELGEPLLSSTLLLPDEAEPLTQGWEIKERLEHEVDAVIDSGDCGTEL-TTVIDFSGDE 191

Query: 188 KVRILRPGGLEIETLK 203
              I+R G  +    +
Sbjct: 192 P-EIVRRGAGDTSRFE 206


>gi|323144451|ref|ZP_08079054.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT
           12066]
 gi|322415766|gb|EFY06497.1| Sua5/YciO/YrdC/YwlC family protein [Succinatimonas hippei YIT
           12066]
          Length = 207

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 3/182 (1%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              ++KAC  +++G    IPT++ Y L  +  +  A+ R+  I+K    +       D+S
Sbjct: 15  PRFIKKACSIIESGGVGVIPTDSAYALCCNIGDKNAMERIAAIRKISKKHNFTLICRDLS 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +  +A V      L K   PG  T +L          L     +T   RVP     + L
Sbjct: 75  ELSTYAKVSNNVFRLLKNNTPGAYTFILPATKEVP-RRLMNEKKRTIGIRVPAGAIIEAL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   S          N    ++  I   + +I+DGG+    + +T++  + + 
Sbjct: 134 LNECSEPLLSCSLILPDHEEPENDPITINDEIGSIVDVIVDGGVLDA-MPTTVIRFEDDI 192

Query: 188 KV 189
            V
Sbjct: 193 PV 194


>gi|297526270|ref|YP_003668294.1| Sua5/YciO/YrdC/YwlC family protein [Staphylothermus hellenicus DSM
           12710]
 gi|297255186|gb|ADI31395.1| Sua5/YciO/YrdC/YwlC family protein [Staphylothermus hellenicus DSM
           12710]
          Length = 216

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 9/207 (4%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M I+         N +R+A   L+    +   T+T+YG+  D      + ++Y  KKR  
Sbjct: 1   MNILKANYINPSMNIVREAYRILENCGLVVGITDTLYGIFADPFRDECVSKVYVAKKRSR 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P+    S    V      D       +  WPGP+T+VL  +                 
Sbjct: 61  -KPIPLLASSPKAVFSITDADHFLQRFLETIWPGPITVVLKPMDNM-FSEKIHLGTGKIG 118

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
           FRVP     +KL +  G  +   SAN SG     N+   +   +   + L ID G + IG
Sbjct: 119 FRVPASPLPRKLAQLNGGFITGTSANISGLKPARNIDEAIK-QLGNNVDLYIDSGTAPIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202
             ST++++  EK + I+R G +   ++
Sbjct: 178 EPSTVIDLTSEKPI-IVRDGAVSYRSI 203


>gi|284028679|ref|YP_003378610.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836]
 gi|283807972|gb|ADB29811.1| Sua5/YciO/YrdC/YwlC family protein [Kribbella flavida DSM 17836]
          Length = 206

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +  + +  G  IA PT++ + L     N   I R+  I++    +       D +
Sbjct: 14  KRAIGQVVDLVRDGGLIAYPTDSCFALGCQLGNRDGIDRIRTIRQLDDRHHFTLVCQDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +        K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QLGQFVHISNAVFRSIKASTPGSYTFILPATKEVP-RRLLHPKKKTVGVRIPDHVVAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    GQ         +   +  ++  +ID G + I   +T+++   + 
Sbjct: 133 VAELGEPLLSSTLLLPGQEEPMTQGWEIKEELDHQVDAVIDSGEAGI-EPTTVIDFSEDV 191

Query: 188 KVRILRPGG 196
              I+R G 
Sbjct: 192 P-EIVRRGA 199


>gi|332991534|gb|AEF01589.1| putative double-stranded RNA-binding protein [Alteromonas sp. SN2]
          Length = 191

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 8/181 (4%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
                  G  +  PTE V G+  D  N  A+  L  +K+RP    +I   ++ S +  + 
Sbjct: 15  IVSAFKNGDLLVYPTEAVMGIGCDPDNEEAVLALLALKQRPIEKGVILIAANYSQLLPYI 74

Query: 75  SVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           + + +  H        WPGP T +L   ++T      T   +    RV      K L E 
Sbjct: 75  NDEAILQHRRTEIVSSWPGPNTWLLPKSASTPQ--WLTGKHEKIAVRVSNHPVVKALCEK 132

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN +GQ      +  ++  I  +    IDG +      STI +    + +R
Sbjct: 133 LEKPLVSTSANLTGQQPAITQQDAIN--IFGDSVFYIDGEVGGHAKPSTIRDGDTGEIIR 190

Query: 191 I 191
            
Sbjct: 191 S 191


>gi|302341611|ref|YP_003806140.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
 gi|301638224|gb|ADK83546.1| Sua5/YciO/YrdC/YwlC family protein [Desulfarculus baarsii DSM 2075]
          Length = 208

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 5/185 (2%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPL 79
            G  +A PTET+YGLAVD+ N  A+ RL  +K+RP   P    +     +    A++ PL
Sbjct: 28  EGAVVAFPTETLYGLAVDAANHRALARLAALKERPDDKPFPLIIGAEGQIAPLAATLTPL 87

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
           +  L    WPGPLT+VL   +   + P  T     A           L    G  +   S
Sbjct: 88  ARRLMAAHWPGPLTIVL--AAAPGLPPELTHQGGVALRLSSHPVAAGLALALGRAVTATS 145

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           AN +G+         L  ++   I L++DGG    G  STIV +   ++ ++LR G + +
Sbjct: 146 ANLAGRP-AQARPEALDPALLARIDLLLDGGPCPGGAPSTIV-LASGRRAKVLRQGAVAL 203

Query: 200 ETLKR 204
              +R
Sbjct: 204 AEEER 208


>gi|82596901|ref|XP_726453.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481870|gb|EAA18018.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 519

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 9/181 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + N  +   E ++    I  PTETVYGL  +S +  ++R ++++K RP  +P+I HV 
Sbjct: 11  IKNDNVKKMLKEHIEKNNLIGFPTETVYGLGGNSLSEISLRNIFKMKNRPISDPIISHVY 70

Query: 66  DISMVKKHASVDPLSLH-----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           DI+          +        L   F PGPL+++    +   +  + TA+ +    R+P
Sbjct: 71  DIAQAFDQLYHINIYEKYIIYILTMNFSPGPLSII--AKAKKHLPLILTAHTQFCAVRIP 128

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                +K+I+    P+A PSAN+   IS TN  H+      + I LI D G   IG+EST
Sbjct: 129 NNKIARKIIKICNTPIAAPSANKFQHISPTNSLHVYDEFKDENI-LIFDDGQCDIGIEST 187

Query: 180 I 180
           +
Sbjct: 188 V 188



 Score = 43.5 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 25/126 (19%)

Query: 222 SPGMLKSHYAPRSQVRLRAIHVNP-------------REALIRFGNVPIKNIENAIISLN 268
           SPG L +HY+P     L  I  N              +   +  GN   +   N +  LN
Sbjct: 391 SPGTLLTHYSPVVSTYLIDIIKNKDEKSNKLLNINLNKCVFLDIGNSFFEYENNFLKYLN 450

Query: 269 LSKTG-----KLKEAAFNLFNYMKIADDS----GASSIAFSSI---PNHGLGIAINNRLE 316
           +S        ++K    N F +++ A++      A  I  S +       L ++I +R+ 
Sbjct: 451 ISYDNLEINEQIKYVTKNFFLFLRKAENLAINHQAKYIFISIVNLKSLDELTLSIFDRIF 510

Query: 317 RAAAPR 322
           R+A+ +
Sbjct: 511 RSASGK 516


>gi|237745676|ref|ZP_04576156.1| translation factor [Oxalobacter formigenes HOxBLS]
 gi|229377027|gb|EEO27118.1| translation factor [Oxalobacter formigenes HOxBLS]
          Length = 208

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 5/190 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  ++KA + +  G  + +PT++ Y L     +  A+ R+ +I++    + L     D+ 
Sbjct: 15  SRLIKKAADVVRGGGVVVMPTDSSYALVCRLDDKAAVDRIRQIRQMDERHLLTLLCRDLK 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V  +A VD  +  L K   PG  T +L          LS  + KT   R+P     + L
Sbjct: 75  EVGSYARVDNSAYRLLKAATPGAFTFILQATKEVP-RRLSHPSRKTIGLRIPDNRIDQAL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G        + +   + K +  +IDGG   + L +T++++  ++
Sbjct: 134 LEELGEPLIGTTLILPGDEDPLTEGYAIQERLEKLVDAVIDGGACGL-LPTTVIDLTGKE 192

Query: 188 K--VRILRPG 195
              VR  R G
Sbjct: 193 PELVRSGRGG 202


>gi|254804056|ref|YP_003082277.1| putative translation factor [Neisseria meningitidis alpha14]
 gi|254667598|emb|CBA03357.1| putative translation factor [Neisseria meningitidis alpha14]
 gi|316984513|gb|EFV63479.1| ribosome maturation factor [Neisseria meningitidis H44/76]
 gi|325127245|gb|EGC50183.1| protein RimN [Neisseria meningitidis N1568]
 gi|325139460|gb|EGC62000.1| protein RimN [Neisseria meningitidis CU385]
 gi|325201186|gb|ADY96641.1| protein RimN [Neisseria meningitidis H44/76]
          Length = 200

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   +L    +  WP P T +L    +  +  L          RV
Sbjct: 72  IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           I+ G I +    S
Sbjct: 131 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 189 QIIDGETGKRLR 200


>gi|261856673|ref|YP_003263956.1| SUA5/yciO/yrdC domain protein [Halothiobacillus neapolitanus c2]
 gi|261837142|gb|ACX96909.1| SUA5/yciO/yrdC domain protein [Halothiobacillus neapolitanus c2]
          Length = 185

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 4/180 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR+  + L  G  IA PTE V+GL  D  +  A+ R+  +K+R     LI   +++  + 
Sbjct: 8   LRQTGQILSQGGVIAYPTEAVFGLGCDPLDAIAVERILTLKQRDWRKGLILLAANLEQLH 67

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIET 130
              S+ P  L      WPGP T V+   ++ +     T        RV        + + 
Sbjct: 68  PWISLSPEELAKISAHWPGPATWVVP--ASQNTPDWITGGRDEVAVRVTAHPVAAAIAQA 125

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
               +   SAN + +    +V  +       ++  I+ G +      + I + +    +R
Sbjct: 126 AHTAIVSTSANPAQRPPARSVLAV-RRYFDDQLDGILTGPVDTQAQPTPIRHWRTGDWLR 184


>gi|227497322|ref|ZP_03927554.1| SUA5/YciO/YrdC/YwlC [Actinomyces urogenitalis DSM 15434]
 gi|226833193|gb|EEH65576.1| SUA5/YciO/YrdC/YwlC [Actinomyces urogenitalis DSM 15434]
          Length = 242

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 93/239 (38%), Gaps = 24/239 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            + +   L      +  G  + IPT+TVYG+   + +  A+ RL   K R    P    V
Sbjct: 3   DVNEDRTLSTVVAHVRDGGLVIIPTDTVYGIGTLASDAAAVARLLAAKGRGRQMPPPVLV 62

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +    +     ++ P +  L + FWPG LT++LD           T    T   R+P   
Sbjct: 63  AGPDQLDGVVGALPPAAQALMEAFWPGALTIILDAAPDLGWDLGETGG--TIAVRMPDHP 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC----------------KEIPLII 167
               +     P+A+ SAN +GQ   T+      +                   +   L++
Sbjct: 121 LALELLRATGPMAVTSANHTGQPPATDAASARVAFPGRVREAGSPGAGSPDRSEGDILLL 180

Query: 168 DGGISKIGLESTIVNVQCEK--KVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPG 224
           DGG +   + STIV++  +     RI+R G L +  L   +   L       ++P + G
Sbjct: 181 DGGATPGPVPSTIVSLAGDHAYSPRIIRDGVLSLSQLAVVLDPVL---TQAGASPMTAG 236


>gi|291515259|emb|CBK64469.1| Sua5/YciO/YrdC/YwlC family protein [Alistipes shahii WAL 8301]
          Length = 193

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 8/190 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A   + AG  I  PT+TV+GL  D+ +  A+ R+Y +K+      ++   +   
Sbjct: 8   QREVDEAVRTMRAGGIILYPTDTVWGLGCDATSAAAVERIYRLKRSGNKKSMLVLCASAD 67

Query: 69  MVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
           M+ ++ +  P ++  + +L    PLT +L   +   +      +  T   R+P   F ++
Sbjct: 68  MIVRYVNKAPGIAFEVMELAT-SPLTAILPGAA--GLAENLIPDEGTLGVRIPDHEFCRR 124

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KIGLESTIVNVQ 184
           ++   G P+   SAN SG+ +   ++ +    I   +  +++           S+I+   
Sbjct: 125 MLRALGRPIVSTSANISGEATPVGLQDVAREIIDG-VDFVVNPRFEGKPTRKASSIIAFG 183

Query: 185 CEKKVRILRP 194
              +V+I+R 
Sbjct: 184 EGGEVKIIRE 193


>gi|146280421|ref|YP_001170574.1| hypothetical protein PST_0024 [Pseudomonas stutzeri A1501]
 gi|212288217|sp|A4VFI1|RIMN_PSEU5 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|145568626|gb|ABP77732.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
 gi|327478637|gb|AEA81947.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 185

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 4/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++    + AG  IA PTE V+G+  D  +  A+ RL  +K+RP    LI     +    
Sbjct: 7   VQQVARVVRAGGVIAYPTEAVWGVGCDPWDEDAVLRLLALKERPVEKGLILIADTVEQFD 66

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 P          WPGP T ++       +    T    +   RV      K +  
Sbjct: 67  FLLDDLPERWLDRLSGTWPGPNTWLVPHRG--RLPEWITGRHDSVALRVTDHPLVKRLCA 124

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN +G+ +  +   +      +++  + +G +      S I +++  + +R
Sbjct: 125 LTGPLVSTSANPAGRPAARSRLRV-EQYFPQQLDAVFNGALGGRRNPSVIRDLRSGEVIR 183

Query: 191 I 191
            
Sbjct: 184 P 184


>gi|327405619|ref|YP_004346457.1| translation factor SUA5 [Fluviicola taffensis DSM 16823]
 gi|327321127|gb|AEA45619.1| translation factor SUA5 [Fluviicola taffensis DSM 16823]
          Length = 205

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 9/199 (4%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP-LICHVS 65
            D+  +++  + L  G  I IPT+ VY +A D  N   +  L + K             S
Sbjct: 10  IDNRLVQQVVDELKKGGIIIIPTDAVYAVACDVMNKKGLAELAKWKDVKLSKANFSIICS 69

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-F 123
           D+S V ++   +D  +  L K + PGP T +LD  +T+++  L  ++ K    R+P    
Sbjct: 70  DLSEVSEYVKQLDRNTFRLLKHYLPGPFTFILD--ATSEVSKLFDSSKKEIGIRIPDNKI 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITN--VKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            + ++E  G+P+A+ S + S    +        +      E+ +IIDGG  K+   STIV
Sbjct: 128 VQAIVERLGNPMAVTSLHDSEDEIMEYFVDPASIYERYDDEVAIIIDGGPGKLD-ASTIV 186

Query: 182 NVQCEKKVRILRPGGLEIE 200
           +        I+R G  +I+
Sbjct: 187 DCTNGN-AEIIRQGVGQID 204


>gi|309973849|gb|ADO97050.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Haemophilus influenzae R2846]
          Length = 183

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +  S    + P ++D  + +    S I +++  + 
Sbjct: 122 EITGFALTSTSANLTGEPPCRTADEV-RSQFGADFP-VLDEMVGRAHNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|145633852|ref|ZP_01789574.1| trigger factor [Haemophilus influenzae 3655]
 gi|144985294|gb|EDJ92133.1| trigger factor [Haemophilus influenzae 3655]
          Length = 183

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HA---SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVNFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +  S    + P ++D  + +    S I +++  + 
Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RSQFGADFP-VLDEMVGRAHNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|121635793|ref|YP_976038.1| hypothetical protein NMC2128 [Neisseria meningitidis FAM18]
 gi|218767259|ref|YP_002341771.1| hypothetical protein NMA0237 [Neisseria meningitidis Z2491]
 gi|120867499|emb|CAM11276.1| hypothetical protein NMC2128 [Neisseria meningitidis FAM18]
 gi|121051267|emb|CAM07543.1| hypothetical protein NMA0237 [Neisseria meningitidis Z2491]
 gi|254671287|emb|CBA08623.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|254672629|emb|CBA06396.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|319411465|emb|CBY91881.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594]
 gi|325131234|gb|EGC53946.1| protein RimN [Neisseria meningitidis M6190]
 gi|325133318|gb|EGC55984.1| protein RimN [Neisseria meningitidis M13399]
 gi|325137408|gb|EGC59996.1| protein RimN [Neisseria meningitidis ES14902]
 gi|325143385|gb|EGC65714.1| protein RimN [Neisseria meningitidis 961-5945]
 gi|325143552|gb|EGC65873.1| protein RimN [Neisseria meningitidis M01-240013]
 gi|325199224|gb|ADY94680.1| protein RimN [Neisseria meningitidis G2136]
          Length = 200

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   +L    +  WP P T +L    +  +  L          RV
Sbjct: 72  IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           I+ G I +    S
Sbjct: 131 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 189 QIIDGETGKRLR 200


>gi|308480641|ref|XP_003102527.1| hypothetical protein CRE_04025 [Caenorhabditis remanei]
 gi|308261259|gb|EFP05212.1| hypothetical protein CRE_04025 [Caenorhabditis remanei]
          Length = 215

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 16/211 (7%)

Query: 2   QIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAV-DSRNPTAIRRLYEIKKRPAM 57
           +I+ +T      A+  A      G  +A+PT+T+YG++     +     RLY +K+RP  
Sbjct: 5   RILRLTADNMEEAIDTAVSVFLRGGIVALPTDTLYGISTLLPFS----DRLYALKQRPFE 60

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            PL   +   + + K  S   +S  LA    PGP+TL+ + L   ++       +     
Sbjct: 61  KPLGIFLPSPTSM-KLVSKQTISDELANCLLPGPVTLMFERLP--NLPDEFNPGVVNVAC 117

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGG-ISKI 174
           RVP C    ++    G PLA  SAN SG   + T++ H    ++   I LI+D G I   
Sbjct: 118 RVPDCAIVSRICRKLGQPLAQTSANVSGSPLNPTSIDH--FKNLHSNIDLILDNGQIVSS 175

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRA 205
           G  STIV++  E   RI+R G  E ET+K+ 
Sbjct: 176 GEGSTIVDLTVESCFRIVRSGCAESETIKKL 206


>gi|168035903|ref|XP_001770448.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678325|gb|EDQ64785.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 291

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 86/219 (39%), Gaps = 24/219 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S +D   L    E + +G    IPT+TVY +  D +N  AI RLY IK    M PL    
Sbjct: 52  SGSDVWRLDPLVELIKSGAVGIIPTDTVYAIVCDLKNRQAIDRLYRIKNMDPMKPLSILC 111

Query: 65  SDISMVKKHASVDPL--------SLHLAKLFWPGPLTLVLDLLSTTD--------IHPLS 108
                + K+    P             A+   PGP T +L                  +S
Sbjct: 112 RSFQDIDKYTLGFPRGNSHGQTNVFRAARQSLPGPYTFILPASKEMPKQCTTFGGSSAVS 171

Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC-----KE 162
            A  K+   R+P      +L++    PL   S  +  +        I++ +       + 
Sbjct: 172 CAPRKSVGVRMPDDVICAELLKRLDEPLLCTSVRQRSEDEWMLDPVIIADTYGASEGREG 231

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
           +  +IDGG  ++   ST++++  EK + ILR G   +E 
Sbjct: 232 VDFVIDGG-ERLAYPSTVIDMTGEKPI-ILRRGKGPVEE 268


>gi|71276454|ref|ZP_00652730.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Dixon]
 gi|71901273|ref|ZP_00683372.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1]
 gi|170731006|ref|YP_001776439.1| hypothetical protein Xfasm12_1935 [Xylella fastidiosa M12]
 gi|71162770|gb|EAO12496.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Dixon]
 gi|71728964|gb|EAO31096.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1]
 gi|167965799|gb|ACA12809.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 209

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 29  LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 88

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P  LH  +  WPGP T VL   ++T      T +      R+        L
Sbjct: 89  DWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 146

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +   L   SAN +GQ S    +  L  S+   +  I+DG    +   ++I + +   
Sbjct: 147 CRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 205

Query: 188 KVRI 191
            +R+
Sbjct: 206 ILRL 209


>gi|308390230|gb|ADO32550.1| hypothetical protein NMBB_2449 [Neisseria meningitidis alpha710]
 gi|325129260|gb|EGC52099.1| protein RimN [Neisseria meningitidis OX99.30304]
 gi|325135372|gb|EGC57993.1| YrdC domain, putative [Neisseria meningitidis M0579]
 gi|325203123|gb|ADY98577.1| protein RimN [Neisseria meningitidis M01-240149]
 gi|325207044|gb|ADZ02497.1| protein RimN [Neisseria meningitidis M04-240196]
 gi|325208992|gb|ADZ04444.1| protein RimN [Neisseria meningitidis NZ-05/33]
          Length = 200

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   +L    +  WP P T +L    +  +  L          RV
Sbjct: 72  IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           I+ G I +    S
Sbjct: 131 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 189 QIIDGETGKRLR 200


>gi|109896360|ref|YP_659615.1| SUA5/yciO/yrdC-like [Pseudoalteromonas atlantica T6c]
 gi|123065188|sp|Q15ZX7|RIMN_PSEA6 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|109698641|gb|ABG38561.1| translation factor SUA5 [Pseudoalteromonas atlantica T6c]
          Length = 187

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 8/175 (4%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG   A PTE V+GL  D  N  A+ +L  +K+R     LI    + S +  +     + 
Sbjct: 16  AGKVFAYPTEAVFGLGCDPDNEQAVNKLLALKQRDVSKGLILVGDNYSQLLPYVDDSAIK 75

Query: 81  L-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLA 136
           +    ++F  WPGP+T +L    T       T   +    RV      K L +    PL 
Sbjct: 76  MTKRTEIFSSWPGPITWLLPKSKTA--PSWVTGESEFIAVRVSAHPLIKDLCQRANKPLV 133

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             SAN +G     +   + +S    ++ LI DG +      S I +    + +R 
Sbjct: 134 STSANTAGHPPALSADEV-TSYFSNQVILI-DGSLGGSRSPSKIRHGHSGQTIRD 186


>gi|68063631|ref|XP_673811.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491931|emb|CAI02427.1| hypothetical protein PB300739.00.0 [Plasmodium berghei]
          Length = 496

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 9/181 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + N  +   E +     I  PTETVYGL  +S +  +++ ++++K RP  +P+I HV 
Sbjct: 11  IKNDNVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPISDPIISHVY 70

Query: 66  DISMV-KKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           DI+    +   ++    ++       F PGPL+++    +   +  + TA+ +    R+P
Sbjct: 71  DIAQAFDQLYHINMYEKYIIYILNMKFSPGPLSII--AKAKEHLPLILTAHTQFCAVRIP 128

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                K++I+    P+A PSAN+   IS TN  H+      + I LI D G   IG+EST
Sbjct: 129 NNKIAKEIIKICDTPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIEST 187

Query: 180 I 180
           +
Sbjct: 188 V 188


>gi|171059265|ref|YP_001791614.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6]
 gi|170776710|gb|ACB34849.1| Sua5/YciO/YrdC/YwlC family protein [Leptothrix cholodnii SP-6]
          Length = 208

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 4/176 (2%)

Query: 28  PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF 87
           PT++ Y L     +  A   L  I+     + L     D+S +  +A VD     L K  
Sbjct: 33  PTDSSYALVCQLDDKAAADALRRIRGVDDKHHLTLLCRDLSELSSYARVDNRQYRLLKSA 92

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQI 146
            PGP T +L+         LS  + +T   RVP    T+ L++ +G PL   +    G+I
Sbjct: 93  TPGPYTFILEATKEVP-RRLSHPSRRTIGLRVPDHRVTQDLLDLFGQPLLGTTLIPPGEI 151

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
              N    +     + + +I+D G       +T+V++     V ++R G  ++ T+
Sbjct: 152 HPLNDCAEIRERFERLVQVIVDAGPCPA-EPTTVVDLSSGDPV-LVRAGRGDLATV 205


>gi|33519687|ref|NP_878519.1| hypothetical protein Bfl220 [Candidatus Blochmannia floridanus]
 gi|81666637|sp|Q7VQB9|RIMN_BLOFL RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|33517350|emb|CAD83735.1| putative translation factor (SUA5) [Candidatus Blochmannia
           floridanus]
          Length = 189

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 8/178 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           E L+ G  I  PTE+V+GL  +  N  AI  L +IK R     LI   ++ + + K+   
Sbjct: 15  EQLNKGKVIVYPTESVFGLGCNPDNENAINTLLKIKCRSWKKGLILVAANYTQLFKYVDD 74

Query: 77  DPL-SLHLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYG 132
             L SL L+++F  WPGP T V    S+T +    T    +   RV      ++L  T+G
Sbjct: 75  RYLNSLQLSRIFSTWPGPFTWVFPARSSTPM--WLTGKFSSVAIRVSNFEPIRRLCLTFG 132

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            PL   SAN SG +    + H +   +  + P I++  +  +   S I +    K +R
Sbjct: 133 KPLVSTSANVSGYLPARTI-HAVYKQLGYDFP-IMNTNVLGLPNPSIIRDAITGKIIR 188


>gi|114321780|ref|YP_743463.1| SUA5/yciO/yrdC-like protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|122310777|sp|Q0A5B4|RIMN_ALHEH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|114228174|gb|ABI57973.1| translation factor SUA5 [Alkalilimnicola ehrlichii MLHE-1]
          Length = 190

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 8/184 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R+    L AG  +A PTE VYGL  D  +P A+  L  +K+R     LI   S +S + 
Sbjct: 11  IRQCAARLQAGGVVAYPTEAVYGLGCDPGDPAAVATLLTLKRRDPGKGLILIASRVSQLS 70

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
                 PL   +    WPGP T +L     T      T        RV        L E 
Sbjct: 71  PWLGDAPLPQAVL-ASWPGPNTWLLPAAPHTPA--WITGGRAKVAVRVTAHPVAAALCEA 127

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSIC---KEIPLIIDGGISKIGLESTIVNVQCEK 187
           +G  +   SANR GQ    +   +  + +     E+  I+ G + +    + I + +   
Sbjct: 128 FGGAIVSTSANRDGQPPARSATQV-RTRLGAEAAELADILPGPVDRSARPTAIRDAESGA 186

Query: 188 KVRI 191
            +R 
Sbjct: 187 VIRA 190


>gi|21672740|ref|NP_660807.1| hypothetical protein BUsg475 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091574|sp|Q8K977|RIMN_BUCAP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|21623386|gb|AAM68018.1| hypothetical 20.8 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 190

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 8/187 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++L K    L     IA PTE ++GL  D  +  A++RL ++KKR     LI   S+ + 
Sbjct: 8   SSLIKCIRKLYDKKIIAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLILVASNYNQ 67

Query: 70  VKKHASVDPLSLHLAKL---FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
           +K + +   LS    K     WPGP T ++   + + +    T    T   R+   F   
Sbjct: 68  IKMYINESKLSAQQKKTMFFHWPGPYTFLVP--ANSLVPCWLTGQFDTIAVRISAHFSII 125

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           KL   +G  L   SAN S        + +L     K+ P ++ G I      S I+N+  
Sbjct: 126 KLCNVFGKALVSTSANISNMSPCLTREDVLKD-FGKDFP-VLYGHIGNESHPSKIINIVN 183

Query: 186 EKKVRIL 192
            K +R +
Sbjct: 184 GKLIRYV 190


>gi|70945247|ref|XP_742464.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521462|emb|CAH84674.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 543

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 9/181 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + +  +   E +     I  PTETVYGL  +S +  +++ ++++K RP  +P+I HV 
Sbjct: 11  IKNDDVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPVSDPIISHVY 70

Query: 66  DISMV-KKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           DI+    +   ++    ++       F PGPL+++    +   +  + TA+ +    R+P
Sbjct: 71  DIAQAFDQLYHINMYEKYIIYILNSNFSPGPLSVI--AKAKEYLPLILTAHTQFCAVRIP 128

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                +++I+    P+A PSAN+   IS TN  H+      + I LI D G   IG+EST
Sbjct: 129 NNKIAREIIKICNIPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIEST 187

Query: 180 I 180
           +
Sbjct: 188 V 188



 Score = 42.0 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 29/130 (22%)

Query: 222 SPGMLKSHYAPRSQVRLRAIHVNP-----------------REALIRFGNVPIKNIENAI 264
           SPG L +HY+P     L  I  N                  +   +  GN   +   N +
Sbjct: 397 SPGTLLTHYSPVVSTYLIDIIKNKDEISNSYNSKLLNIDLNKCVFLDIGNSFFEYENNFL 456

Query: 265 ISLNLS-----KTGKLKEAAFNLFNYMKIADDS----GASSIAFSSI---PNHGLGIAIN 312
             LN+S        ++K    N F +++ A++      A  I  S +       L ++I 
Sbjct: 457 KYLNISYDNLEVNEQIKYVTKNFFLFLRKAENLAINHQAEYIFISIVNLKSLDELTLSIF 516

Query: 313 NRLERAAAPR 322
           +R+ R+A+ +
Sbjct: 517 DRIFRSASGK 526


>gi|188996882|ref|YP_001931133.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931949|gb|ACD66579.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 195

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 7/199 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+I  S  L  A + +  G  +   T+T+YG+  ++ +  A+ ++Y IK+R    P I  
Sbjct: 1   MNINISTKLDDAIDVIKHGGIVITKTDTIYGILANALDKEAVEKVYLIKEREKDKPFIIL 60

Query: 64  VSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + +   +KK     +P +  +  L     +T++ D+    +         KT  FR+P  
Sbjct: 61  IPNTKFLKKIKVKENPQAEKILNL---KGITVIFDVNDPNNELEYLHRGTKTLAFRIPDD 117

Query: 123 F-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                 +     P+  PSAN SG     ++   +      ++ L ID G S+  + STIV
Sbjct: 118 PEFLSFLNKLDTPIVAPSANPSGLKPAEDINKAI-EYFKDKVDLYIDRGKSETNIPSTIV 176

Query: 182 NVQCEKKVRILRPGGLEIE 200
            V+  K ++ILR G  +I+
Sbjct: 177 KVENSK-IKILRQGSKQID 194


>gi|320006906|gb|ADW01756.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 206

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 4/193 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    E + +G  +A PT++ Y L     +   I R+  I+     +       + + + 
Sbjct: 17  ITNVAESIRSGALVAYPTDSCYALGCQLGSRDGIDRIRSIRNLDDRHHFTLVCQNFAQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +   VD       K   PG  T +L          L     KT   R+P    T+ L+  
Sbjct: 77  QFVQVDNDVFRAIKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQALLTE 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   +     +         +   +   + +++D G       +T+++     ++ 
Sbjct: 136 LGEPLLSSTLLLPDEEEPLTQGWEIKERLEHVVDVVLDSGDCGT-EPTTVIDFSG-GELE 193

Query: 191 ILRPGGLEIETLK 203
           ++R G  ++   +
Sbjct: 194 VVRRGAGDVSRFE 206


>gi|68074035|ref|XP_678932.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56499550|emb|CAH97465.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 522

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 8/180 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + N  +   E +     I  PTETVYGL  +S +  +++ ++++K RP  +P+I HV 
Sbjct: 11  IKNDNVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPISDPIISHVY 70

Query: 66  DISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           DI+          +       L   F PGPL+++    +   +  + TA+ +    R+P 
Sbjct: 71  DIAQAFDQLYHINMYEKYIYILNMKFSPGPLSII--AKAKEHLPLILTAHTQFCAVRIPN 128

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               K++I+    P+A PSAN+   IS TN  H+      + I LI D G   IG+EST+
Sbjct: 129 NKIAKEIIKICDTPIAAPSANKFQHISPTNSLHVYEEFKDENI-LIFDDGQCDIGIESTV 187



 Score = 44.3 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 29/130 (22%)

Query: 222 SPGMLKSHYAPRSQVRLRAIHVNP-----------------REALIRFGNVPIKNIENAI 264
           SPG L +HY+P     L  I  N                  +   +  GN   +   N +
Sbjct: 376 SPGTLLTHYSPVVSTYLIDIIKNKDEKSNKYSSKLLNINLNKCIFLDIGNSFFEYENNFL 435

Query: 265 ISLNLS-----KTGKLKEAAFNLFNYMKIADDS----GASSIAFSSI---PNHGLGIAIN 312
             LN+S        ++K    N F +++ A++      A  I  S +   P + L ++I 
Sbjct: 436 KYLNISYDNLEVNEQIKYVTKNFFLFLRKAENLAINHQAKYIFISIVNLKPLNELTLSIF 495

Query: 313 NRLERAAAPR 322
           +R+ R+A+ +
Sbjct: 496 DRIFRSASGK 505


>gi|262199867|ref|YP_003271076.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365]
 gi|262083214|gb|ACY19183.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365]
          Length = 208

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
               +++A + L  G   A PT++ Y L        A  R+Y+ K     + +     DI
Sbjct: 13  PPRKIQQAVDILHRGGVAAYPTDSCYALGCAIEAKQAALRIYQAKSMSQNHRMALICPDI 72

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRV-PCGFTK 125
           +   ++     L+  LAK  +PGP TLVL   +T ++  L      +TA  R+      +
Sbjct: 73  ASASEYVHFSQLAYKLAKRIFPGPYTLVLP--ATREVPKLVIDKKQRTAGIRITSNPVAQ 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L+   G PL   +A    +            +    + +++D   S     +T+V V  
Sbjct: 131 ALVNALGRPLLTSTAILPDEDGACIDADETIDAFGHILDVVVDSE-SPGDEPTTVVEVAG 189

Query: 186 EKKVRILRPGGLEIETL 202
              V +LR G   ++ +
Sbjct: 190 ND-VNVLREGVGPLDGI 205


>gi|296313775|ref|ZP_06863716.1| protein RimN [Neisseria polysaccharea ATCC 43768]
 gi|296839703|gb|EFH23641.1| protein RimN [Neisseria polysaccharea ATCC 43768]
          Length = 200

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   +L  + +  WP P T +L    +  +  L          RV
Sbjct: 72  IVIGNQFEQLQPLLQMPSENLQAMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           I+ G I +    S
Sbjct: 131 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 189 QIIDGETGKRLR 200


>gi|332300598|ref|YP_004442519.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177661|gb|AEE13351.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 195

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 6/187 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +A R+A + L  G  I  PT+T++GL  D+ N  A+ RL  +K RP   P++  V     
Sbjct: 12  SAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGKPMLMLVDSDVR 71

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           ++ +    P            PLT++       ++ P   A+  +   R+      +++ 
Sbjct: 72  IQSYVRTVPSMAFQLIDVAVRPLTIIYP--EGRNVAPQLLADDGSIGIRIASDTLCQEIC 129

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GLESTIVNVQCE 186
                PL   SAN +G  S  N    +  ++ K +  ++     +   G+ S I+ +   
Sbjct: 130 RMLRRPLVSTSANLAGTSSPHNYSE-IDPALIKMVDYVVPLRQDEHIDGMPSDIIKLGIN 188

Query: 187 KKVRILR 193
            +VR++R
Sbjct: 189 NEVRVIR 195


>gi|324522067|gb|ADY47983.1| YrdC domain-containing protein [Ascaris suum]
          Length = 208

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 20/207 (9%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +TDS    AL +A   L++G  IA+PT+T+YGL+    N     +L+++K R  M 
Sbjct: 3   KIIRLTDSTFEVALSRAVAVLESGGVIALPTDTIYGLSTTLGNAD---KLFKLKFRSRMK 59

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P    +SD++ + K A +  + +H  +   PGP+TLV +   ++ +        +T   R
Sbjct: 60  PFALFLSDVTEISKWA-IPTIGIHTMRRLLPGPVTLVFNR--SSRLPAEFNEGHRTIGIR 116

Query: 119 VPCG-FTKKLIETYG-HPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGI--SK 173
           +P   F   L +  G  PLA  SAN SG   +  +V+      +   + LIIDG +    
Sbjct: 117 IPDHSFVHALSKRLGDTPLAQTSANLSGAAENPVSVED--FEDLWPGVDLIIDGDVLKDP 174

Query: 174 IGL----ESTIVNVQCEKKVRILRPGG 196
            G      ST+VN+       I+R G 
Sbjct: 175 TGKVSRRGSTVVNLCIPGTYSIIRDGC 201


>gi|297183543|gb|ADI19672.1| putative translation factor (sua5) [uncultured Alteromonadales
           bacterium HF4000_16C08]
          Length = 191

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 8/180 (4%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
               + G+ +  PTE V G+  D  + +A+  L EIK+RP    +I   ++ S +  + +
Sbjct: 16  VAAFENGMLLVYPTEAVMGIGCDPDSESAVLALLEIKQRPIEKGVILVAANYSQLLPYVN 75

Query: 76  VD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETY 131
            +   P         WPGP T +L    +T      T        RV      + + ET 
Sbjct: 76  DNAIRPDMRTEIFSSWPGPNTWLLP--KSTSAPMWLTGKHDKIAVRVSNHPTVRAMCETL 133

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G P+   SAN +GQ     +      +I  +  L ++G + K    STI + +    +R 
Sbjct: 134 GKPVVSTSANLTGQPPARTLDEA--KTIFADSVLYVEGSVGKSSKPSTIRDGETGDIIRA 191


>gi|227875435|ref|ZP_03993576.1| RNA binding protein [Mobiluncus mulieris ATCC 35243]
 gi|269977313|ref|ZP_06184286.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1]
 gi|306818746|ref|ZP_07452468.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239]
 gi|307700961|ref|ZP_07637986.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16]
 gi|227843989|gb|EEJ54157.1| RNA binding protein [Mobiluncus mulieris ATCC 35243]
 gi|269934616|gb|EEZ91177.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris 28-1]
 gi|304648432|gb|EFM45735.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris ATCC 35239]
 gi|307613956|gb|EFN93200.1| Sua5/YciO/YrdC/YwlC family protein [Mobiluncus mulieris FB024-16]
          Length = 207

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L +  E +  G  +A PT++ Y L     N   + R+ +I++    +       D S
Sbjct: 15  ARLLNQIVEIIREGGIMAYPTDSGYALGCALANAEGLERIRKIRRLDDKHHFTLVCHDFS 74

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +   +  L K   PG  T +L          L+     +   R+P     + L
Sbjct: 75  QLGQLVMISNANFRLIKSLTPGSYTFILKGTKEVPRATLNKKKH-SVGVRIPNHKVARSL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G  +   +    G+    N    +   +   + +I+D  I      +T++N++  +
Sbjct: 134 VEALGEAILSCTLILPGESEPLNNATDVVEKLGHVLDVIVDAPIGNP-QATTVINMEDGQ 192

Query: 188 KVRILRPGGLEIETL 202
            V + R G   I+ L
Sbjct: 193 PV-VTREGAGSIDFL 206


>gi|15677963|ref|NP_275135.1| hypothetical protein NMB2150 [Neisseria meningitidis MC58]
 gi|161871012|ref|YP_001600192.1| hypothetical protein NMCC_2108 [Neisseria meningitidis 053442]
 gi|81784069|sp|Q9JXA4|RIMN_NEIMB RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288211|sp|A9M4K6|RIMN_NEIM0 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288268|sp|A1KWL6|RIMN_NEIMF RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288269|sp|A1IP83|RIMN_NEIMA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|7227408|gb|AAF42458.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|161596565|gb|ABX74225.1| putative translation factor [Neisseria meningitidis 053442]
 gi|261393462|emb|CAX51108.1| putative RNA-binding protein [Neisseria meningitidis 8013]
          Length = 189

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 1   MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   +L    +  WP P T +L    +  +  L          RV
Sbjct: 61  IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 119

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           I+ G I +    S
Sbjct: 120 PAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 177

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 178 QIIDGETGKRLR 189


>gi|119962387|ref|YP_947794.1| Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens TC1]
 gi|119949246|gb|ABM08157.1| putative Sua5/YciO/YrdC/YwlC family protein [Arthrobacter aurescens
           TC1]
          Length = 206

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +    L  G  IA PT++ Y L     N  A+ R+  I++    +       D +
Sbjct: 14  PRAIGQVVNMLQGGGLIAYPTDSCYALGAQIGNREALDRIRTIRQLDDKHHFTLVCKDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QMGQFVMLDNDIFRSIKAVTPGSYTFILPATKEVP-KRLLHPKKKTVGVRIPDHRVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +  ++  +ID G +     +T+++     
Sbjct: 133 LAELGEPLLSSTLLLPDEEEPLTQGWEIKERLDNQVDGVIDAGDTGS-EPTTVIDFSS-G 190

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +    +
Sbjct: 191 VAEVVRYGTGDPSRFE 206


>gi|220904022|ref|YP_002479334.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868321|gb|ACL48656.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 223

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 20/213 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             L++A   L  G  +  PTET YGL   + +  A+ R+Y+ K+RP   PL    +    
Sbjct: 8   RDLQEAVACLRGGHALIFPTETFYGLGCLASDAAAVSRIYQFKRRPVHKPLPLLAASEGQ 67

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLI 128
           V+  A ++ +   L + FWPGPLT++L          ++ A       RV P      L 
Sbjct: 68  VRSVAQLEAMPEPL-RAFWPGPLTVLLPARQGLPSQLVNEAGQ--VAVRVTPHPVAAALA 124

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSIC-----KEIPLII-DGGISKIGLESTIVN 182
           +  G PL   SAN +G+  +  V  +    +       + P ++ +G   + G+ S++V 
Sbjct: 125 QGAGGPLTASSANLNGRSPVCAVADLDPQLLAALQDLGQCPCVVAEGPQPQGGVPSSLVE 184

Query: 183 VQCE----------KKVRILRPGGLEIETLKRA 205
           +  E          +++RI+R G +    L+ A
Sbjct: 185 LLPEQGERRAGASCRRLRIIRSGAVSRAALEAA 217


>gi|212212644|ref|YP_002303580.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212]
 gi|212011054|gb|ACJ18435.1| Sua5/YciO/YrdC/YwlC family protein [Coxiella burnetii CbuG_Q212]
          Length = 204

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 8/207 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + I   N     +++A E +  G  +A  T++ Y L     N +   R+  +++   
Sbjct: 1   MATIHIHPDNPQARLIKQAVETVKTGGILAYSTDSGYALGCGLGNKSGAERIRRLRQLNK 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +P      D+S +  +A +        K   PGP T +L          L     KT  
Sbjct: 61  AHPFTLLCRDLSEIAVYARIANPVFRFLKAHTPGPYTFILSATQAVP-RQLQHPKRKTIG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            RVP     + ++E    PL   +    G+    +        +  ++ LI+D G+   G
Sbjct: 120 IRVPDHRVIQAILEQLQEPLMNVTLIFPGEQWAPSEISEREDELAAQVDLIVDSGVC--G 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETL 202
           +E T +    + +  ILR G  +I  +
Sbjct: 178 VEPTTLIDLVDGEPTILREGKGDISEI 204


>gi|53803092|ref|YP_115232.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str.
           Bath]
 gi|81680872|sp|Q603G8|RIMN_METCA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|53756853|gb|AAU91144.1| Sua5/YciO/YrdC/YwlC family protein [Methylococcus capsulatus str.
           Bath]
          Length = 186

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 5/181 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           LR A   L  G  +A PTE VYGL  D  N  A+R+L  +K+R  +  LI   +D+  V+
Sbjct: 9   LRLAANALRNGRIVAYPTEAVYGLGCDPFNEDAVRKLLALKRRSQIKGLILIAADVEAVE 68

Query: 72  KHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
               +  + L    +  WPGP T ++       I         +   RV        L  
Sbjct: 69  SLVDLARVPLGAEVRAGWPGPTTWLIP--PRPGIPDWLRGAHDSLAVRVTAHPVAAALCR 126

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G  +   SAN SG         +      +     + G +      + I +    +++
Sbjct: 127 VFGGAIVSTSANLSGHRPARTPVRLWR-QFPRRAIHFLPGRLGGAVRPTAIFDAMSGRRI 185

Query: 190 R 190
           R
Sbjct: 186 R 186


>gi|300788712|ref|YP_003769003.1| translation factor [Amycolatopsis mediterranei U32]
 gi|299798226|gb|ADJ48601.1| putative translation factor [Amycolatopsis mediterranei U32]
          Length = 206

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 4/195 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            AL +  E L A   IA PT++ + L     N   + R+  I+K    +       D + 
Sbjct: 15  RALGQVVEILRADGLIAYPTDSCFALGCRPGNRDGLDRIRAIRKLDHRHHFTLVCQDFAQ 74

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           + +   +D       K   PG  T +L          L     KT   R+P    T+ L+
Sbjct: 75  LGQFVHIDNAVFRAIKAATPGSYTFILPATKEVP-RRLMHEKKKTVGVRIPDHRVTQALL 133

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              G PL   +    G          +   +  ++  ++D G   +   +T+V+     +
Sbjct: 134 AELGEPLLSSTLLLPGSGEPMTQGWEIKEELDHQLEAVLDSGDCGV-EPTTVVDFSS-GE 191

Query: 189 VRILRPGGLEIETLK 203
             ILR G  +    +
Sbjct: 192 AEILRVGAGDPAPFE 206


>gi|238021424|ref|ZP_04601850.1| hypothetical protein GCWU000324_01324 [Kingella oralis ATCC 51147]
 gi|237868404|gb|EEP69410.1| hypothetical protein GCWU000324_01324 [Kingella oralis ATCC 51147]
          Length = 207

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 10/192 (5%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++++    +ALR+    +  G  IA PTE+ YG+  + R+  A+R +  +KKRP     I
Sbjct: 23  RLLTHHAPSALRR---HIQRGGLIAYPTESCYGIGANPRHAHALRAILRLKKRPQHKGFI 79

Query: 62  CHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK-TACFRV 119
              ++++ ++      P       +  WP P++ VL   +   + PL   N +     RV
Sbjct: 80  TIGNNLAQLEPLLQRQPENVRQHLRATWPAPISFVLP--AHPRVLPLLRGNQRNRLAVRV 137

Query: 120 PCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L    G PL   S N+SG+ +  + + +    +      I+ G + K    S
Sbjct: 138 PNHAVARELCRIAGTPLVSTSCNQSGKRACKSEREV--RRLFGRKLWIVGGRVGKRKQPS 195

Query: 179 TIVNVQCEKKVR 190
            IV+    +++R
Sbjct: 196 EIVDWAENRRLR 207


>gi|227495471|ref|ZP_03925787.1| RNA binding protein [Actinomyces coleocanis DSM 15436]
 gi|226831018|gb|EEH63401.1| RNA binding protein [Actinomyces coleocanis DSM 15436]
          Length = 204

 Score =  140 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 79/205 (38%), Gaps = 8/205 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + I   N     +++    L+ G  IA+PT++ Y +     N   + ++ +I+    
Sbjct: 1   MTYLEIHPENPQPRLVKQVVSALENGAVIALPTDSGYAICTQMGNKKGMDQIRQIRHLDE 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +       +   + +   VD  +    K   PGP T +L          +      T  
Sbjct: 61  KHNFSLLCHNFGQLGQLVIVDNKAFRTIKAVTPGPYTFILKATKEIP-RMMLNKKKHTIG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P    T+ ++E  G PL   +    G+       + +   I  +I ++I G +   G
Sbjct: 120 IRIPDHKITQAVVEELGQPLLCSTLIMPGEEEALWEAYDVDDRIGGQIDIVIAGPVGGQG 179

Query: 176 LESTIVNVQCEKKVRILRPGGLEIE 200
             +T+V+      V ++R G   ++
Sbjct: 180 -ATTVVDFTENTPV-VVREGAGTLD 202


>gi|229496359|ref|ZP_04390079.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316937|gb|EEN82850.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 198

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 8/189 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+++A + + AG  I  PT+T++GL  D+ N  A++R++ +K R     ++  +   +
Sbjct: 13  KRAVQEASKVVKAGGIILYPTDTIWGLGCDATNEEAVQRIFTLKGRAESKAMLLLIDSDA 72

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            +      V  ++  L       PLTL+       ++ P   A   T   R+    F++ 
Sbjct: 73  KLPGLVREVPDIAYQLIDAA-VSPLTLIYP--GGRNVAPSLIAPEGTLGIRITHEAFSRA 129

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID--GGISKIGLESTIVNVQ 184
           L      PL   SAN SGQ +       +S  I   +  ++            S I+++ 
Sbjct: 130 LCAAVRVPLVSTSANLSGQPAPKIFAE-ISEEIKAAVDYVVPVRQDECTPARPSEIISIG 188

Query: 185 CEKKVRILR 193
              +V+ILR
Sbjct: 189 LGGEVKILR 197


>gi|256832140|ref|YP_003160867.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM
           20603]
 gi|256685671|gb|ACV08564.1| Sua5/YciO/YrdC/YwlC family protein [Jonesia denitrificans DSM
           20603]
          Length = 206

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L  G  IA PT++ Y L     N     R+  I+     + +    SD S
Sbjct: 14  QRLISQVADALRNGAVIAYPTDSGYALGCAMDNHFGSDRIRAIRDLDERHHMTLVCSDFS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D  +    K   PGP T +L          L+    KT   R+P     + +
Sbjct: 74  QLGQLVILDNHAFRAIKAATPGPYTFILPATKEVP-RRLAHPKKKTVGVRIPDNEIVRSI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           I   G P+   S       S       +   +   +  +++ G    G E T V      
Sbjct: 133 IAELGEPILSSSLILPDIDSPLTEGWQIKEELDHVLDAVVEAGDC--GEEPTTVIDYSSG 190

Query: 188 KVRILRPGG 196
              ++R G 
Sbjct: 191 SAEVVRVGA 199


>gi|325955575|ref|YP_004239235.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922]
 gi|323438193|gb|ADX68657.1| Sua5/YciO/YrdC/YwlC family protein [Weeksella virosa DSM 16922]
          Length = 184

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 7/186 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L  G  +  PT+T+ GL  ++ +  AI ++Y IK RP    LI  V   + ++
Sbjct: 3   IQEIAERLLNGETMIYPTDTILGLGCNALDDKAIAKIYSIKNRPESKSLILLVDSPARLQ 62

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
               V  L+  L  L    PLT++ D      +     +   T   R+    F  ++I+ 
Sbjct: 63  SIVDVPELTWDLIDLN-EKPLTIIYD--DPRGLPKSLVSKDNTIGIRLTKDPFCCQIIQR 119

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KIGLESTIVNVQCEKK 188
              PL   S N S Q +  +    +S +I +++  ++D   +       STI+ +  + +
Sbjct: 120 IKAPLVSTSVNISSQKAAQSYAD-ISPAILEKVDFVVDEAKTFLPKSEPSTIIQLTKDLQ 178

Query: 189 VRILRP 194
           V+++R 
Sbjct: 179 VKVIRE 184


>gi|126465445|ref|YP_001040554.1| translation factor SUA5 [Staphylothermus marinus F1]
 gi|126014268|gb|ABN69646.1| translation factor SUA5 [Staphylothermus marinus F1]
          Length = 216

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 9/210 (4%)

Query: 1   MQIMSIT----DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M I+         N +++A   L +   +   T+T+YG+  D      + R+Y +KKR  
Sbjct: 1   MNILRANFINPSINIIQEAYRILKSCGLVVGVTDTLYGIFADPFRDECVSRIYVVKKR-K 59

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P+    S    V    +++       ++ WPGP+T++L  + +           +   
Sbjct: 60  GKPIPLLASSPKAVFSITNINHNLQRFLEVIWPGPVTVILKPIDSI-FSEEIHLGTEKIG 118

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
           FRVP     +KL E  G  +   SAN SG     N++  +   +   I L ID G + IG
Sbjct: 119 FRVPASPLPRKLAELNGGFITGTSANISGLKPAKNIEEAIK-QLGNNIDLYIDSGTAPIG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRA 205
             ST++++  EK + I+R G +   ++ R 
Sbjct: 178 EPSTVIDLTSEKPL-IVRDGVVSYRSIIRL 206


>gi|304388786|ref|ZP_07370842.1| translation factor RimN [Neisseria meningitidis ATCC 13091]
 gi|304337238|gb|EFM03416.1| translation factor RimN [Neisseria meningitidis ATCC 13091]
 gi|325205095|gb|ADZ00549.1| protein RimN [Neisseria meningitidis M01-240355]
          Length = 200

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   +L  + +  WP P T +L    +  +  L          RV
Sbjct: 72  IVIGNQFEQLQPLLQMPSENLQAMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRV 130

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L      PL   S NR+G+ +    + +           I+ G I +    S
Sbjct: 131 PAHVGARRLCLALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPS 188

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 189 QIIDGETGKRLR 200


>gi|257064847|ref|YP_003144519.1| Sua5/YciO/YrdC/YwlC family protein [Slackia heliotrinireducens DSM
           20476]
 gi|256792500|gb|ACV23170.1| Sua5/YciO/YrdC/YwlC family protein [Slackia heliotrinireducens DSM
           20476]
          Length = 202

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 12/204 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA---VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++++   A   L+ G PI  PT+TVYG+      ++ P A   +Y+IK+R A   +   V
Sbjct: 6   ETSSFDDALAALNVGRPIIFPTDTVYGIGLAVGLAQTPQA---IYDIKERDAGKAIPWLV 62

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
              S +  +   V   +  +A++FWPGPLTL++   ST  +         T   R+P   
Sbjct: 63  GQHSSLLLYGQDVPEFAQTMARVFWPGPLTLIVRAAST--VPKAFCGPDGTIALRMPDDD 120

Query: 124 -TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              +LI   G PLA  SAN  G         I  + +   +   +   + + G+ ST+ +
Sbjct: 121 TALELIRRCGFPLATSSANLQGHKPPRRFSEIDPAVL-SRVSAALGDNVPRSGVSSTVAD 179

Query: 183 VQCEKKVRILRPGGLEIETLKRAI 206
              +    I+R G +        +
Sbjct: 180 CTGDHP-EIIRVGAITAADFAALL 202


>gi|121608594|ref|YP_996401.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae
           EF01-2]
 gi|121553234|gb|ABM57383.1| Sua5/YciO/YrdC/YwlC family protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 211

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              LR+A   L  G  +A+PT++ Y LA    +  A  RL  I++    + L     D+S
Sbjct: 14  PRLLRQAAALLRQGGIVAVPTDSSYALACHLDDKDAAERLRRIRQVDDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +   A VD     L +L  PGP T +L+         +S    KT   RVP     + L
Sbjct: 74  ELASCARVDNRQYRLLRLGTPGPYTFILEATREVP-RRVSHPARKTLGLRVPDHKGLQLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           ++ +G PL   +   +G     N    +      ++  I+D G       +T++++    
Sbjct: 133 LQLHGAPLLATTLIPAGASEPLNDPQEIRRHYAGQLAAIVDAGACPR-EPTTVLDLTPMG 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R G   +  L
Sbjct: 192 VGGAPEVVRAGRGSLPAL 209


>gi|301168423|emb|CBW28013.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 207

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 4/196 (2%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D   L+KA E L  G  +  PT+T + +  D  N   + +LY +K    +         I
Sbjct: 11  DDRVLKKASETLKDGGLVCYPTDTNWIIVCDPFNKKGLEKLYRVKNEGPLKHYSLICDTI 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
           S   + A +   +  + +   PG  T + +          +  + K    R  P   T+ 
Sbjct: 71  SHAGEVAYIHDSAFKMIRKKVPGHYTFIFEAKKKITRAVQANKSDKEVGVRFCPDSITQN 130

Query: 127 LIETYGHPLAIP--SANRSG-QISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           LIE +G  L     +A+  G ++  T   + +  +    + +IID G  +   ESTIV++
Sbjct: 131 LIEIHGDVLLSTNITADLLGLELGETFYSYQIEETFRGPLDMIIDPGEYEFVGESTIVDL 190

Query: 184 QCEKKVRILRPGGLEI 199
             E +V ++R G    
Sbjct: 191 SVEGEVEVIREGAGPW 206


>gi|15837521|ref|NP_298209.1| hypothetical protein XF0919 [Xylella fastidiosa 9a5c]
 gi|81547878|sp|Q9PEV9|RIMN_XYLFA RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|9105840|gb|AAF83729.1|AE003931_6 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 187

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 7   LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P  LH  +  WPGP T VL   ++T      T +      R+        L
Sbjct: 67  DWLDLDTLSPERLHEVQTSWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +   L   SAN +GQ      +  L  S+   +  I+DG    +   ++I + +   
Sbjct: 125 CRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 183

Query: 188 KVRI 191
            +R+
Sbjct: 184 ILRL 187


>gi|308188319|ref|YP_003932450.1| hypothetical protein Pvag_2851 [Pantoea vagans C9-1]
 gi|308058829|gb|ADO11001.1| Uncharacterized protein yrdC [Pantoea vagans C9-1]
          Length = 190

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++L    E L+    IA PTE V+GL  D  + +A+  L  +K+RP    LI   +D S
Sbjct: 7   ADSLETCLEHLNRQAVIAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYS 66

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            ++ + S   LS          W  P  +   +          T    +   RV      
Sbjct: 67  QLEPYISARELSVVQRERMFACW--PGPVTFVVPVPPQTPRWLTGQFDSLAIRVSDHPDV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +G PL   SAN SGQ      + +      +  P ++ G        S I +V 
Sbjct: 125 QALCRAFGKPLVSTSANLSGQPPCRTAEEV-KQQFGEPFP-VLSGKTGGRLNPSEIRDVI 182

Query: 185 CEKKVR 190
             + +R
Sbjct: 183 SGELIR 188


>gi|329937663|ref|ZP_08287182.1| translation factor SUA5 [Streptomyces griseoaurantiacus M045]
 gi|329303062|gb|EGG46950.1| translation factor SUA5 [Streptomyces griseoaurantiacus M045]
          Length = 206

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +  + +  G  +  PT++ + L     +   + R+  I++  + +       D +
Sbjct: 14  ARTIGQVADSIRDGALVVYPTDSCFALGCRLGSRDGMERIRSIRQLDSRHHFTLVCRDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   VD       K   PG  T +L          L     +T   R+P     + L
Sbjct: 74  QLGQFVRVDNDVFRAVKASTPGSYTFILPATPEVP-RKLLHPKKRTVGVRIPDHRVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +     V   +   +   +  +ID G       +T+V+     
Sbjct: 133 LAELGEPLLSSTLLLPDEEEPMTVGWEIKERLDHVVDAVIDSGDCGT-EPTTVVDFSS-G 190

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G  +    +
Sbjct: 191 EAEIVRRGAGDPSRFE 206


>gi|88705375|ref|ZP_01103086.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71]
 gi|88700465|gb|EAQ97573.1| Sua5/YciO/YrdC/YwlC family protein [Congregibacter litoralis KT71]
          Length = 179

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 5/182 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +R     L A   IA PTE V+GL+ D  +  A++RL ++K+RPA   LI   +D + + 
Sbjct: 1   MRLCANALAADGVIACPTEAVWGLSCDPFSEVAVQRLLDLKQRPAHKGLILVAADEAQLD 60

Query: 72  KHASVDPLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
                 P SL    ++ WPGP T ++       + PL     ++   RV      + L  
Sbjct: 61  FLLEGLPESLRQKIRVSWPGPNTWLVPHRG--RVSPLVHGRFESVAVRVSGHPDVRALCR 118

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G PL   SAN +G  +   +  +  +     +  ++ G +      S I +V  ++  
Sbjct: 119 VHGGPLVSSSANVAGSPAPKTLLAV-RNYFGTGLDAVLPGQVGSADRPSVIRDVFTDEVF 177

Query: 190 RI 191
           R 
Sbjct: 178 RA 179


>gi|319897809|ref|YP_004136006.1| ribosome maturation factor sua5/ycio/yrdc [Haemophilus influenzae
           F3031]
 gi|317433315|emb|CBY81691.1| predicted ribosome maturation factor SUA5/yciO/yrdC [Haemophilus
           influenzae F3031]
          Length = 183

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  + +    S I +++  + 
Sbjct: 122 ELSGFALTSTSANLTGEPPCRTADEV-RLQFGSDFP-VLDEMVGRAHNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|307708641|ref|ZP_07645104.1| Sua5/YciO/YrdC family protein [Streptococcus mitis NCTC 12261]
 gi|307615215|gb|EFN94425.1| Sua5/YciO/YrdC family protein [Streptococcus mitis NCTC 12261]
          Length = 140

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + L+ G  + +PTETVYGL   + +  A+  +Y++K+RP    L  +++ +  + 
Sbjct: 2   MDRIRQELENGGAVVLPTETVYGLFAKALDEKAVDHVYQLKRRPRDKALNLNIASLEDIL 61

Query: 72  KHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
             +   P  L  L + F PGPLT++L+  +   +     + L T  FR+P    T  LI 
Sbjct: 62  HFSKNQPTYLQKLVETFLPGPLTIILE--ANDRVPYWVNSGLATVGFRMPSHPITLDLIR 119

Query: 130 TYGHPLAIPSANRSGQ 145
             G PL  PSAN SGQ
Sbjct: 120 ETG-PLIGPSANISGQ 134


>gi|254784309|ref|YP_003071737.1| protein YrdC [Teredinibacter turnerae T7901]
 gi|237687380|gb|ACR14644.1| protein YrdC [Teredinibacter turnerae T7901]
          Length = 186

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 69/183 (37%), Gaps = 6/183 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +  + L+ G  IA PTE V+GL  D  N  A+ ++  +K+R     LI   +  + +
Sbjct: 8   AIHRCVDALNKGDVIAYPTEAVWGLGCDPFNQHAVDKVLWLKRRKPEKGLIIVAASAAQI 67

Query: 71  KKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           +     + P         WPGP T ++       I         T   RV      + L 
Sbjct: 68  QWLLQGITPAQEQQLSASWPGPNTWLIPHHG--RIPANVCGQHATIAVRVSSHPVVRALC 125

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           + YG P+   SAN        +   +      ++      G +      S I +++  + 
Sbjct: 126 QAYGGPIVSTSANPQALRPARDATQVRH--YFRDSVYYAPGRVGGNPTPSVIRDLRSGQI 183

Query: 189 VRI 191
           +R 
Sbjct: 184 IRP 186


>gi|319760358|ref|YP_004124296.1| putative ribosome maturation factor [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039072|gb|ADV33622.1| putative ribosome maturation factor [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 191

 Score =  139 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 81/196 (41%), Gaps = 12/196 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I SIT+ + ++     L     I  PTE+V+GL  +  + +AIR L +IK+R     L
Sbjct: 1   MIINSITEYS-IKNLSMQLKKNRVIIYPTESVFGLGCNPDSESAIRTLLKIKRRSWKKGL 59

Query: 61  ICHVSDISMVKKHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I   ++ S + K+            L    WPGP+T V    +        T    +   
Sbjct: 60  ILVAANYSQLLKYVDDRLLSDNQRLLVFSTWPGPVTWVFP--ARVGTPYWLTGQFSSIAV 117

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RV      + L   +G PL   SAN SG      V  + +      +P++     + +GL
Sbjct: 118 RVSDFKPIRYLCLDFGKPLVSTSANLSGYPPARTVIEVHNQFRYYNLPIM---HHNVLGL 174

Query: 177 --ESTIVNVQCEKKVR 190
              S I +V   + +R
Sbjct: 175 PCPSEIRDVVSGRIIR 190


>gi|269215063|ref|ZP_05987667.2| protein RimN [Neisseria lactamica ATCC 23970]
 gi|269208379|gb|EEZ74834.1| protein RimN [Neisseria lactamica ATCC 23970]
          Length = 189

 Score =  139 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 1   MLFPRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   +    ++    +   +L    +  WP P T +L    +  +  L          R+
Sbjct: 61  IVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRI 119

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +  G PL   S NR+G+ +    + +           I+ G I +    S
Sbjct: 120 PDHAGARRLCQALGMPLVSTSCNRAGKRACRAEREVRRQF--GRDVWIVGGRIGRQKSPS 177

Query: 179 TIVNVQCEKKVR 190
            I++ +  K++R
Sbjct: 178 QIIDGETGKRLR 189


>gi|268532948|ref|XP_002631602.1| Hypothetical protein CBG20783 [Caenorhabditis briggsae]
 gi|187023055|emb|CAP37734.1| hypothetical protein CBG_20783 [Caenorhabditis briggsae AF16]
          Length = 216

 Score =  139 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 94/199 (47%), Gaps = 13/199 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-DSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
             A+  A      G  +A+PT+T+YG++     +     RLY +K+RP   PL   +   
Sbjct: 16  EEAIDTAVSVFLRGGIVALPTDTLYGISTLLPFS----DRLYALKQRPFEKPLGIFLPSP 71

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
           + + K  S   +S  LA    PGP+TL+ + L T  +       +     RVP C     
Sbjct: 72  TSM-KLVSKQTISDELANCLLPGPVTLMFERLPT--LPAEFNPGVANVACRVPDCPIVSM 128

Query: 127 LIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQ 184
           +    G PLA  SAN SG   + T++ H     +   I LI+D G I   G  STIV++ 
Sbjct: 129 ICRKLGQPLAQTSANVSGSPLNPTSIDH--FKDLQPYIDLILDNGQIVSTGEGSTIVDLT 186

Query: 185 CEKKVRILRPGGLEIETLK 203
            E K RI+R G  E ET+K
Sbjct: 187 VESKFRIVRSGCAEKETMK 205


>gi|182682384|ref|YP_001830544.1| SUA5/yciO/yrdC domain-containing protein [Xylella fastidiosa M23]
 gi|182632494|gb|ACB93270.1| SUA5/yciO/yrdC domain [Xylella fastidiosa M23]
          Length = 209

 Score =  139 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 29  LSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 88

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P  LH  +  WPGP T VL   ++T      T +      R+        L
Sbjct: 89  DWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 146

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +   L   SAN +GQ      +  L  S+   +  I+DG    +   ++I + +   
Sbjct: 147 CRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 205

Query: 188 KVRI 191
            +R+
Sbjct: 206 ILRL 209


>gi|297571292|ref|YP_003697066.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931639|gb|ADH92447.1| Sua5/YciO/YrdC/YwlC family protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 208

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 4/194 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + K  + L  G  IA+PT++ Y +     N   + R+  I++    +       D +
Sbjct: 14  QRLVDKVVDRLRRGEVIAMPTDSGYAICCMMANKDGLERIRRIRQVGDKHHFTLLCHDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   VD     L K   PGP T +L                 T   R+P    T+ +
Sbjct: 74  QLGQLVIVDNAVFRLVKSLTPGPYTFILKGTKEVP-RMTLNPKKATVGVRIPDHKITQAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + T G PL   +    G+    +    ++  +   + ++++G +   G  +T++++  + 
Sbjct: 133 VNTLGEPLLSSTLIMPGESEPMSQGWEIADLLTNAVDVVVEGPVGVDG-PTTVLDM-SDG 190

Query: 188 KVRILRPGGLEIET 201
            V I R G  +   
Sbjct: 191 NVTIARVGAGDTSM 204


>gi|282857413|ref|ZP_06266646.1| Sua5/YciO/YrdC/YwlC family protein [Pyramidobacter piscolens W5455]
 gi|282584698|gb|EFB90033.1| Sua5/YciO/YrdC/YwlC family protein [Pyramidobacter piscolens W5455]
          Length = 140

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +A PTETVYGL  ++ +  A++++Y  K RP+ NPLI H      V++ A VD  + 
Sbjct: 30  GELVAFPTETVYGLGGNALDGEAVKKIYAAKGRPSDNPLILHFPSPEAVERAAFVDDRAR 89

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGH 133
            L   FWPGPLTLVL       +   +   L T   R+P            G 
Sbjct: 90  RLMARFWPGPLTLVLPARDC--VSKEARGGLTTVGCRMPDYPAALAFFAACGV 140


>gi|326924468|ref|XP_003208449.1| PREDICTED: hypothetical protein LOC100546811 [Meleagris gallopavo]
          Length = 856

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 12/220 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  + L  G    IPT+TVY L      P A+ + +  K++    P+   +S + 
Sbjct: 593 ASSVKRIADILKNGGTCGIPTDTVYVLVAACNRPDAVEKAHRSKQQAQERPMSLWISSLK 652

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP-C 121
            ++       PL        WP P++LV+      D              ++   R+P C
Sbjct: 653 QLEPAKHLFSPLLWDFMDAAWPSPISLVIPRGKWVDFLGMKDSAKYVGTPQSVAIRIPDC 712

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  LI+  G P+ + SAN +G+   T+   +  + +  ++  ++  G S   + ST+V
Sbjct: 713 SVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCDGPSPENIASTVV 770

Query: 182 NVQ--CEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS 218
           +        +   R G +    + + +  V+ +Y V   S
Sbjct: 771 DCTKIDSGNIGFFRVGIIPKSQVLQILEQVQKKYSVVPNS 810


>gi|33440306|ref|ZP_00141878.1| COG0009: Putative translation factor (SUA5) [Pasteuria nishizawae
           str. North American]
          Length = 150

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+++A + L  G  +A PTETVYGL   +   +AI+R++  K RP  NPLI H +++ 
Sbjct: 27  DTAIQEAAQCLQKGGVVAFPTETVYGLGALATRTSAIQRVFTAKNRPHDNPLILHFANVQ 86

Query: 69  M-VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
             ++   S+     +L +   PGP+T V+       + PL+TA+L T   RVP     + 
Sbjct: 87  RILQALPSLPQALQNLLQSTMPGPITWVVPHT-IPWVSPLATASLPTIAVRVPSHPIAQA 145

Query: 127 LIET 130
           L++ 
Sbjct: 146 LLQR 149


>gi|212288257|sp|B0U4N0|RIMN_XYLFM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 187

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 7   LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P  LH  +  WPGP T VL   ++T      T +      R+        L
Sbjct: 67  DWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +   L   SAN +GQ S    +  L  S+   +  I+DG    +   ++I + +   
Sbjct: 125 CRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 183

Query: 188 KVRI 191
            +R+
Sbjct: 184 ILRL 187


>gi|225620696|ref|YP_002721954.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira hyodysenteriae WA1]
 gi|225215516|gb|ACN84250.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira hyodysenteriae WA1]
          Length = 198

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 12/201 (5%)

Query: 4   MSITDSNALRKAC----EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +   +S ++  A     + ++ G  +  PT+TVYG+  D+ N  A+ R+Y IK R    P
Sbjct: 5   LDKNNSESIEYAANEVIKVINDGGIVVSPTDTVYGMLADAFNTDAVNRIYTIKDREKNKP 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L+    D+  VKK +  D     + K   PG LT ++ LL   ++    +    T   R+
Sbjct: 65  LLILSKDLESVKKFS--DKEVPDIIKNNIPGELTFIVPLLE--ELKNKFSYLKDTVALRI 120

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P     ++I    +PL  PSAN SG   I +    L+     +  LI++ G+ +  + ST
Sbjct: 121 PNDKYMQIILKGTNPLVAPSANPSGYGVILDGNE-LAELYKDKADLIVNAGVLENKMPST 179

Query: 180 IVNVQCEKKVRILRPGGLEIE 200
           + +       ++LR G + ++
Sbjct: 180 LYDCLAN---KVLRQGSVHLD 197


>gi|256783346|ref|ZP_05521777.1| hypothetical protein SlivT_02520 [Streptomyces lividans TK24]
          Length = 206

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++ +  + + +G  IA PT++ Y L     +   I R+  I++    +       D +
Sbjct: 14  PRSIAQVADSVRSGALIAYPTDSCYALGCRLGSRDGIDRIRSIRQLDNRHHFTLVCQDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 74  QLGQFVQIDNDVFRAIKASTPGSYTFILPATREVP-RALQHPKKKTVGVRIPDHVVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  ++D G       +T+V+     
Sbjct: 133 LAELGEPLLSSTLLLPDEEEPMTQGWEIKDRLDHVLDAVVDSGDCGT-EPTTVVDFSG-G 190

Query: 188 KVRILRPGG 196
           +  I+R G 
Sbjct: 191 EAEIVRHGA 199


>gi|21225634|ref|NP_631413.1| hypothetical protein SCO7360 [Streptomyces coelicolor A3(2)]
 gi|289767219|ref|ZP_06526597.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24]
 gi|8052373|emb|CAB92203.1| conserved hypothetical protein SC9H11.14c [Streptomyces coelicolor
           A3(2)]
 gi|289697418|gb|EFD64847.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces lividans TK24]
          Length = 200

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++ +  + + +G  IA PT++ Y L     +   I R+  I++    +       D +
Sbjct: 8   PRSIAQVADSVRSGALIAYPTDSCYALGCRLGSRDGIDRIRSIRQLDNRHHFTLVCQDFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 68  QLGQFVQIDNDVFRAIKASTPGSYTFILPATREVP-RALQHPKKKTVGVRIPDHVVTQAL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  ++D G       +T+V+     
Sbjct: 127 LAELGEPLLSSTLLLPDEEEPMTQGWEIKDRLDHVLDAVVDSGDCGT-EPTTVVDFSG-G 184

Query: 188 KVRILRPGG 196
           +  I+R G 
Sbjct: 185 EAEIVRHGA 193


>gi|148244943|ref|YP_001219637.1| Sua5 family translation factor [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326770|dbj|BAF61913.1| translation factor, Sua5/YciO/YrdC/YwlC family [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 204

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 10/206 (4%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +++ I   N     L +  + L  G  I  PT++ Y L     N   + R+  I+     
Sbjct: 3   KLLEIHPKNPQIRLLEQVADELRRGAVIVYPTDSGYALGATLGNKNGLERIRCIRNLSKQ 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +     + D++ + ++A +D +S  L K   PG  T VL        + L  A  KT  F
Sbjct: 63  HYFTLMMRDLAHIGEYAKLDNISFRLLKRILPGSYTFVLQGTRDVP-NRLLHAKKKTIGF 121

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RV      + L++    P+   S          ++  +   S+ K + +IIDGG   +  
Sbjct: 122 RVSNHGLVQALLDVLNEPIINTSLIIKDCEF-FDIDDVY-DSLEKRVDVIIDGGYCPL-E 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            +T++++     + I+R G  +I  +
Sbjct: 179 PTTVIDLSLS-SINIIRQGAGDISLI 203


>gi|145631687|ref|ZP_01787450.1| hypothetical protein CGSHi22421_05142 [Haemophilus influenzae
           R3021]
 gi|144982710|gb|EDJ90246.1| hypothetical protein CGSHi22421_05142 [Haemophilus influenzae
           R3021]
          Length = 183

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +  S    + P ++D  + +    S I +++  + 
Sbjct: 122 EITGFALTSTSANLTGEPPCRTADEV-RSQFGADFP-VLDEIVGEALNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|319775401|ref|YP_004137889.1| ribosome maturation factor SUA5/yciO/yrdC [Haemophilus influenzae
           F3047]
 gi|317449992|emb|CBY86204.1| predicted ribosome maturation factor SUA5/yciO/yrdC [Haemophilus
           influenzae F3047]
          Length = 183

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAETLRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  + +    S I +++  + 
Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RLQFGSDFP-VLDEMVGRAHNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|94676536|ref|YP_588859.1| hypothetical protein BCI_0417 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|212277667|sp|Q1LT55|RIMN_BAUCH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|94219686|gb|ABF13845.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 198

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 14/186 (7%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    + L     +A PTE ++GL  D  +  A+  L  +KKR     LI   ++   + 
Sbjct: 18  IYHIIKLLHQQQVVAYPTEAMFGLGCDPDSEKAVHTLLTLKKRDWQKGLILVAANYEQLA 77

Query: 72  KHASVDPL---SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
            +   + L           WPGP+T  +   +TT      T    T   R+      + L
Sbjct: 78  NYIDDNSLNINQRARMFSLWPGPITWTIPARTTTPC--WLTGKFSTLAVRISAFKPVRML 135

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL---IIDGGISKIGLESTIVNVQ 184
              +G P+   SAN SGQ    N+  +         P+   II+G  S     S I +  
Sbjct: 136 CLAFGKPIVSTSANVSGQSPARNICEV-RQQFGAAFPVMDQIIEGRYS----PSEIRDAI 190

Query: 185 CEKKVR 190
             + +R
Sbjct: 191 SGQLIR 196


>gi|255535929|ref|YP_003096300.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium
           3519-10]
 gi|255342125|gb|ACU08238.1| Sua5 YciO YrdC YwlC family protein [Flavobacteriaceae bacterium
           3519-10]
          Length = 190

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 7/194 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M  +  N ++   + L +G  I  PT+T++G+  D+ N  AI +++EIK+R     +I  
Sbjct: 1   MPKSTLNTMQNLIDTLISGGTILYPTDTIWGIGCDATNVEAINKIFEIKRREKSKSMIVL 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCG 122
           V  +  ++    V  L+  +       P+T++ D      +     A   +   R +   
Sbjct: 61  VESVKRLQDIVDVPELAWDIMD-LSEKPVTIIYDNPKG--LPAELLAEDGSIGIRLIKDP 117

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL--ESTI 180
           + KKLI     PL   SAN SG  S       +S  I   +  + D    K+     S++
Sbjct: 118 YLKKLIGKLNKPLVSTSANLSGSKSPMKFSD-ISDEIISSVDAVSDENHDKVSEYSGSSV 176

Query: 181 VNVQCEKKVRILRP 194
           + +  + +V+ILR 
Sbjct: 177 IRMWMDGRVKILRE 190


>gi|315226266|ref|ZP_07868054.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens DSM
           10105]
 gi|315120398|gb|EFT83530.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens DSM
           10105]
          Length = 308

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 16/222 (7%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +    L AG  + IPT+TVYG+  D R+   + R++E K RP    +    +D    +K 
Sbjct: 45  EVKNLLSAGHVVVIPTDTVYGIIADPRSQVGVGRIFEAKSRPRTKSVQILCADAPQAQKL 104

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFTKKLIETY 131
             + P +   L   F  G + LV  +     +         ++   R P G   + I  +
Sbjct: 105 GLIFPQIYQDLLAEFPKGAVCLVCPVKDDCQLVTTRQEKGYRSQAVRFPAGRQARAIIDF 164

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN--------- 182
             P+A  SANRSG  S T V+  ++  +   +PL +DGG +   + ST+++         
Sbjct: 165 VGPVAASSANRSGDKSATTVQEAIAE-LGGSVPLYLDGGATSGPVASTVISLDPASMAQA 223

Query: 183 VQCEKK----VRILRPGGLEIETLKRAISVELEYCVDETSTP 220
           +  E+     +++LR G +   +L       +     E   P
Sbjct: 224 LSGEEPLNPQLKVLRRGVVPESSLNAWALSRVRGLGGENRLP 265


>gi|126348032|emb|CAJ89752.1| putative translation factor [Streptomyces ambofaciens ATCC 23877]
          Length = 200

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++ +  + + +   IA PT++ Y L     +   I R+  I++  + +       D +
Sbjct: 8   PRSIAQVADSVRSDALIAYPTDSCYALGCRLGSRDGIDRIRSIRQLDSRHHFTLVCQDFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            + +   +D       K   PG  T +L          L     KT   R+P     + L
Sbjct: 68  QLGQFVQIDNDVFRAIKASTPGSYTFILPATREVP-RMLQHPKKKTVGVRIPDHVVTQSL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   +  +ID G       +T+V+     
Sbjct: 127 LAELGEPLLSSTLLLPGEEEPMTQGWEIKDRLDHVVDAVIDSGDCGT-EPTTVVDFSGGG 185

Query: 188 KVRILRPGG 196
              I+R G 
Sbjct: 186 -AEIVRRGA 193


>gi|113460156|ref|YP_718212.1| Sua5 family translation factor [Haemophilus somnus 129PT]
 gi|112822199|gb|ABI24288.1| possible translation factor, Sua5 family [Haemophilus somnus 129PT]
          Length = 192

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 8/194 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M      ++  + +  E L     +A PTE V+GL  +  + +A+ +L  +K+RP    L
Sbjct: 1   MSTYFQNNNMNITQIIEKLKQNEVVAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGL 60

Query: 61  ICHVSDISMVKKHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I     +           ++       +  +P P+T ++   +  DI      N  +   
Sbjct: 61  ILVAPKLDYFFSFIDKEQINSQHWQKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAI 118

Query: 118 RVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RV      K L E  G  L   SAN SG         +       + P ++D  +     
Sbjct: 119 RVSQHPAIKILCEQTGFALTSTSANLSGIAPCKTSDEV-RLQFGADFP-VLDMSVGSAAK 176

Query: 177 ESTIVNVQCEKKVR 190
            S I ++   + VR
Sbjct: 177 PSEIRDLFTNQLVR 190


>gi|325267209|ref|ZP_08133874.1| translation factor RimN [Kingella denitrificans ATCC 33394]
 gi|324981326|gb|EGC16973.1| translation factor RimN [Kingella denitrificans ATCC 33394]
          Length = 207

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 5/188 (2%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            I    AL +   +L  G  IA PTE+ YGL     +  AIRR+  +KKRP    LI   
Sbjct: 23  RIQSPRALWRLRAYLKRGGIIAYPTESCYGLGGLPTHAGAIRRIIRLKKRPQNKGLIVIG 82

Query: 65  SDISMVKK-HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           +++  ++     +   +    +  WP P T VL   +      L  A  +    RVP   
Sbjct: 83  NELQQLQPLLCRLPDDTQQQLQNIWPAPKTFVLSCRTKVH-PMLRGARRRQLATRVPDHL 141

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             +++       L   S NR+ Q    N K        +++  I+ G + K    S I++
Sbjct: 142 LARQICREAKSALISTSCNRAKQKPCRNSKEA-RKRFGRQV-WILGGQVGKRKNPSKIID 199

Query: 183 VQCEKKVR 190
              + ++R
Sbjct: 200 WSTKTQLR 207


>gi|148827835|ref|YP_001292588.1| hypothetical protein CGSHiGG_06565 [Haemophilus influenzae PittGG]
 gi|212277677|sp|A5UHE9|RIMN_HAEIG RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|148719077|gb|ABR00205.1| hypothetical protein CGSHiGG_06565 [Haemophilus influenzae PittGG]
          Length = 183

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAVRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +  S    + P ++D  + +    S I +++  + 
Sbjct: 122 EITGFALTSTSANLTGEPPCRIADEV-RSQFGADFP-VLDEMVGRAHNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|256072137|ref|XP_002572393.1| hypothetical protein [Schistosoma mansoni]
 gi|238657551|emb|CAZ28624.1| expressed protein [Schistosoma mansoni]
          Length = 287

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 93/229 (40%), Gaps = 49/229 (21%)

Query: 2   QIMSITDSNA-LRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +I+++ D++  L    + +      +A+PT+T+YGLA    N  AI R+  IK R    P
Sbjct: 20  KIINVKDASLNLNAIVQLISQNDGVVALPTDTIYGLACSVFNTEAIERIRRIKGRSETKP 79

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA----NLKTA 115
           +   +  +S +        +   L     PGP+T++L   S     PLST       K  
Sbjct: 80  MAICLDQVSHISHWCDTKNIPTGLLSDLLPGPVTVLLPRFSDRLQDPLSTRLLNLGDKRV 139

Query: 116 CFRVPC-GFTKKLIETY------------------------------GHPLAIPSANRSG 144
             R+P  GF +KLI                                 GHPL + SAN SG
Sbjct: 140 GIRIPDSGFIRKLISALNEQTRSSSIIGNNVEHSSGCDERDSISISGGHPLVLTSANLSG 199

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIGL----------ESTIVNV 183
           Q S   ++    S I   I LII+GG  +  +           STI+++
Sbjct: 200 QPSAIQIEE--FSEIWSSIDLIINGGPIQSDIFSGNSDCSRAGSTIIDL 246


>gi|194367364|ref|YP_002029974.1| SUA5/yciO/yrdC domain [Stenotrophomonas maltophilia R551-3]
 gi|194350168|gb|ACF53291.1| SUA5/yciO/yrdC domain [Stenotrophomonas maltophilia R551-3]
          Length = 196

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L AG  IA PTE V+GL  D  +  A+  +  +K+RP    +I   ++++ ++
Sbjct: 16  LDSAVASLRAGGVIAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAAELAQLE 75

Query: 72  KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
                  +           WPG  T +L       +    T        R+        L
Sbjct: 76  GWVRLQALPDARQRAVLASWPGANTWILPAGPRAQL--WITGEHSGIAVRISAHPLVAAL 133

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +G PL   SAN +G+    + +  L   + + +  I+DG    +   + I +     
Sbjct: 134 CRAWGGPLVSTSANLAGEPPARS-REELDPRLLRLLDGILDGETGGLAQPTPIRDALSGN 192

Query: 188 KVRI 191
            +R 
Sbjct: 193 VLRS 196


>gi|212288271|sp|Q0I1B6|RIMN_HAES1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 183

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L     +A PTE V+GL  +  + +A+ +L  +K+RP    LI     +    
Sbjct: 3   ITQIIEKLKQNEVVAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFF 62

Query: 72  KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-L 127
                  ++       +  +P P+T ++   +  DI      N  +   RV      K L
Sbjct: 63  SFIDKEQINSQHWQKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPAIKIL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G  L   SAN SG         +       + P ++D  +      S I ++   +
Sbjct: 121 CEQTGFALTSTSANLSGIAPCKTSDEV-RLQFGADFP-VLDMSVGSAAKPSEIRDLFTNQ 178

Query: 188 KVR 190
            VR
Sbjct: 179 LVR 181


>gi|118089557|ref|XP_426272.2| PREDICTED: similar to putative transmembrane protein TA-2 [Gallus
           gallus]
          Length = 818

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 11/207 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  + L  G    IPT+TVY L      P A+ + +  K++    P+   +S + 
Sbjct: 555 ASSVKRIADILKNGGTCGIPTDTVYVLVAACNRPDAVEKAHRSKRQAQERPMSLWISSLK 614

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP-C 121
            ++       PL        WP P++LV+      D              ++   R+P C
Sbjct: 615 QLEPAKHLFSPLLWDFMDAAWPSPISLVIPRGEWVDFLGMKDSAKYVGTPQSVAIRIPDC 674

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  LI+  G P+ + SAN +G+   T+   +  + +  ++  ++  G S   + ST+V
Sbjct: 675 SVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCDGPSPENIASTVV 732

Query: 182 NVQ--CEKKVRILRPGGLEIETLKRAI 206
           +        +   R G +    + + +
Sbjct: 733 DCTKIDSGNIGFFRVGIIPKSQVLQIL 759


>gi|309751744|gb|ADO81728.1| tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein
           [Haemophilus influenzae R2866]
          Length = 183

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--PYFLTGKFDSIAVRLCDHSSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  +      S I +++  + 
Sbjct: 122 ELVGFALTSTSANLTGEPPCRTADEV-RLQFGADFP-VLDEIVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|224098292|ref|XP_002195404.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 865

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 89/207 (42%), Gaps = 11/207 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  + L  G    IPT+TVY L      P A+ + +  K++    P+   +S + 
Sbjct: 606 ASSVKRIADILRNGGTCGIPTDTVYVLVAACSRPDAVEKAHRSKRQAQDRPMSLWISSLK 665

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRVP-C 121
            ++       PL     +  WP P++LV+      D              ++   R+P C
Sbjct: 666 QLEPAKHLFTPLLWDFMEAAWPSPISLVIPRGEWVDFLGMKDSAKYVGTPQSVAIRIPDC 725

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  LI+  G P+ + SAN +G+   T+   +  + +  ++  ++ GG S   + ST+V
Sbjct: 726 SVTTHLIDLVG-PIVVTSANPTGEADTTHHNQVY-AKLGDKVDAVLCGGPSPENIASTVV 783

Query: 182 NVQ--CEKKVRILRPGGLEIETLKRAI 206
           +        +   R G +    + + +
Sbjct: 784 DCTKIDSGNIGFFRVGIIPKSQVLQIL 810


>gi|170718186|ref|YP_001785212.1| SUA5/yciO/yrdC domain-containing protein [Haemophilus somnus 2336]
 gi|212288206|sp|B0UWV9|RIMN_HAES2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|168826315|gb|ACA31686.1| SUA5/yciO/yrdC domain [Haemophilus somnus 2336]
          Length = 183

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L     +A PTE V+GL  +  + +A+ +L  +K+RP    LI     +    
Sbjct: 3   ITQIIEKLKQNEVVAYPTEAVFGLGCNPFSQSAVEKLLILKQRPREKGLILVAPKLDYFF 62

Query: 72  KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-L 127
                  ++       +  +P P+T ++   +  DI      N  +   RV      K L
Sbjct: 63  SFIDKEQINSQHWQKLQQTYPRPITWIVP--AKKDIAKFLCGNFNSIAIRVSQHPAIKIL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G  L   SAN SG         +       + P ++D  +      S I ++   +
Sbjct: 121 CEQTGFALTSTSANLSGIAPCKTSDEV-RLQFGADFP-VLDMSVGSATKPSEIRDLFTNQ 178

Query: 188 KVR 190
            VR
Sbjct: 179 LVR 181


>gi|86158876|ref|YP_465661.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775387|gb|ABC82224.1| translation factor SUA5 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 212

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 5/187 (2%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +  PTET YGL   + +  A+ RL   K RP   PL    +D   V + AS++  + 
Sbjct: 19  GGIVVYPTETFYGLGALASDGAALARLAAAKLRPEGKPLPLVAADREQVDRVASLEGAAA 78

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSA 140
            LA   WPGPLTLVL       +    TA   T   R+P     + L    G  L   SA
Sbjct: 79  RLAGRLWPGPLTLVLPARPG--LSEAITAGSGTVGVRIPGSEVARALARMAGGALVSTSA 136

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           N SG      V   L +++   +  ++D G +  GL ST+V V  E+ +R++RPG + IE
Sbjct: 137 NLSGGPPPDRV-EALDAALRAAVDHVLDAGPTPGGLPSTVVAVAGEE-LRVVRPGAVSIE 194

Query: 201 TLKRAIS 207
            +  A++
Sbjct: 195 QVTAALA 201


>gi|294786662|ref|ZP_06751916.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens
           F0305]
 gi|294485495|gb|EFG33129.1| Sua5/YciO/YrdC/YwlC family protein [Parascardovia denticolens
           F0305]
          Length = 291

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 16/222 (7%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +    L AG  + IPT+TVYG+  D R+   + R++E K RP    +    +D    +K 
Sbjct: 28  EVKNLLSAGHVVVIPTDTVYGIIADPRSQVGVGRIFEAKSRPRTKSVQILCADAPQAQKL 87

Query: 74  ASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFTKKLIETY 131
             + P +   L   F  G + LV  +     +         ++   R P G   + I  +
Sbjct: 88  GLIFPQIYQDLLAEFPKGAVCLVCPVKDDCQLVTTRQEKGYRSQAVRFPAGRQARAIIDF 147

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN--------- 182
             P+A  SANRSG  S T V+  ++  +   +PL +DGG +   + ST+++         
Sbjct: 148 VGPVAASSANRSGDKSATTVQEAIAE-LGGSVPLYLDGGATSGPVASTVISLDPASMAQA 206

Query: 183 VQCEKK----VRILRPGGLEIETLKRAISVELEYCVDETSTP 220
           +  E+     +++LR G +   +L       +     E   P
Sbjct: 207 LSGEEPLNPQLKVLRRGVVPESSLNAWALSRVRGLGGENRLP 248


>gi|28199639|ref|NP_779953.1| hypothetical protein PD1768 [Xylella fastidiosa Temecula1]
 gi|81438360|sp|Q87AQ5|RIMN_XYLFT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212288258|sp|B2I8S9|RIMN_XYLF2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|28057754|gb|AAO29602.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 187

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 7   LSEAVTALQQGDVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 66

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
               +D   P  LH  +  WPGP T VL   ++T      T +      R+        L
Sbjct: 67  DWLDLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +   L   SAN +GQ      +  L  S+   +  I+DG    +   ++I + +   
Sbjct: 125 CRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPTSIRDARSGH 183

Query: 188 KVRI 191
            +R+
Sbjct: 184 ILRL 187


>gi|299531543|ref|ZP_07044949.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44]
 gi|298720506|gb|EFI61457.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni S44]
          Length = 214

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + L  G  +A+PT++ Y L     +  A+ R+  I++    + L     D+S
Sbjct: 14  PRIIKQAADMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +A VD     L KL  PGP T +L+         LS  + KT   RVP     + L
Sbjct: 74  ELANYARVDNRQYRLLKLATPGPYTFILEASKEVP-KRLSHPSRKTIGLRVPDRKGLQLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           +E  G PL   +    G+    N    +      E+  ++D G       +T++++    
Sbjct: 133 LEELGEPLLATTLIAPGETEPLNDAESILERFPHELDAVVDSGACPQ-QPTTVLDLTPMA 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R G   ++ +
Sbjct: 192 LNNPPVVVRQGMGGLKDI 209


>gi|283768245|ref|ZP_06341158.1| Sua5/YciO/YrdC/YwlC family protein [Bulleidia extructa W1219]
 gi|283105122|gb|EFC06493.1| Sua5/YciO/YrdC/YwlC family protein [Bulleidia extructa W1219]
          Length = 200

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 18/208 (8%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I   ++ N L    + L     +A+PT+TV+G+     +  A   L ++KKRP     
Sbjct: 1   MLICQNSEINVL---VDLLRKDEVVAVPTDTVFGVCARYDHIQAQENLRDLKKRPETKAF 57

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV- 119
               +D+  V +   +      +   F PGPLT++L       +         T   R+ 
Sbjct: 58  PIMCADMEQVLQICEMCEEEKRVMNQFMPGPLTMIL--KKKKGVPSFVNGGKDTIAIRLA 115

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHI--LSSSICKEIPLIIDGGISKIGLE 177
                 ++I   G P+ + SAN SG+ +   V+ +  + +++  ++         +    
Sbjct: 116 TSPILAEMIGKLGVPVYMTSANVSGEPAALTVEDVPGVKAALAGKV---------EFAQA 166

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205
           STIV    E   ++LR G + ++ ++ A
Sbjct: 167 STIV-FYGEAGWKVLRQGPILLQQIQEA 193


>gi|71898888|ref|ZP_00681055.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1]
 gi|71731300|gb|EAO33364.1| SUA5/yciO/yrdC, N-terminal [Xylella fastidiosa Ann-1]
          Length = 209

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 7/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +A   L  G  IA PTE V+GL  D R  TA+  L  IK+R +   LI   ++++ ++
Sbjct: 29  LSEAVTALQQGGVIAYPTEAVWGLGCDPRQETAVHTLLNIKQRASGKGLILVTAELNTLQ 88

Query: 72  KHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
              ++D   P  LH  +  WPGP T VL   ++T      T +      R+        L
Sbjct: 89  DWLNLDTLSPERLHEVQASWPGPHTWVLP--ASTRAPHWITGHHNGLAVRISAHPLVSAL 146

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              +   L   SAN +GQ S    +  L  S+   +  I+DG    +   + I + +   
Sbjct: 147 CRAWNMALISTSANVAGQ-SPARRREDLDPSLLPHLAGIVDGPTGGLAQPTPIRDARSGH 205

Query: 188 KVRI 191
            +R+
Sbjct: 206 ILRL 209


>gi|17537239|ref|NP_496826.1| hypothetical protein Y48C3A.18 [Caenorhabditis elegans]
          Length = 244

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 14/210 (6%)

Query: 2   QIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +T      A+  A      G  +A+PT+T+YG++   +      RLY +K+RP   
Sbjct: 6   RILRLTADNIEEAIDAAVCVFLRGGIVALPTDTLYGISTLLQYSD---RLYALKQRPYEK 62

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PL   +   + + K  S   +S  LA    PGP+TL+ + L    +       +     R
Sbjct: 63  PLGIFLPSPTAM-KLVSRQTISDELANCLLPGPVTLMFERLPC--LPAEFNPGVVNVACR 119

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGG-ISKIG 175
           VP C     + +  G PLA  SAN SG  ++ T++ H     +   I LI+D G I   G
Sbjct: 120 VPDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDH--FRDLHPNIDLILDAGSIISSG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRA 205
             STIV++  E   RI+R G  E ET+++ 
Sbjct: 178 EGSTIVDLTVESGFRIVRSGCAEKETMQKL 207


>gi|289627012|ref|ZP_06459966.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 162

 Score =  137 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 4/165 (2%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1   MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66  DISMVK-KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +I            L L      WPGP T ++       +    T   +T   RV    T
Sbjct: 61  NIRQFDFLFEDFPQLWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPT 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
            + +     PL   SAN +G+ +  +   +       +I  ++ G
Sbjct: 119 VRELCALVGPLISTSANPAGRPAARSRLRV-EQYFRGQIDGVLGG 162


>gi|264676972|ref|YP_003276878.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2]
 gi|262207484|gb|ACY31582.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni CNB-2]
          Length = 214

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A + L  G  +A+PT++ Y L     +  A+ R+  I++    + L     D+S
Sbjct: 14  PRIIKQAADMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +A VD     L KL  PGP T +L+         LS  + KT   RVP     + L
Sbjct: 74  ELANYARVDNRQYRLLKLATPGPYTFILEASKEVP-KRLSHPSRKTIGLRVPDRKGLQLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           +E  G PL   +    G+    N    +      E+  ++D G       +T++++    
Sbjct: 133 LEELGEPLLATTLIAPGETEPLNDAESILERFPHELDAVVDSGACPQ-QPTTVLDLTPMA 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R G   ++ +
Sbjct: 192 LNNPPVVVRQGMGGLKDI 209


>gi|145635688|ref|ZP_01791384.1| hypothetical protein CGSHiAA_01574 [Haemophilus influenzae PittAA]
 gi|145267083|gb|EDK07091.1| hypothetical protein CGSHiAA_01574 [Haemophilus influenzae PittAA]
          Length = 183

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +  S    + P ++D  +      S I +++  + 
Sbjct: 122 EITGFALTSTSANLTGEPPCRTTDEV-RSQFGADFP-VLDEIVGGALNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|221068835|ref|ZP_03544940.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1]
 gi|220713858|gb|EED69226.1| Sua5/YciO/YrdC/YwlC family protein [Comamonas testosteroni KF-1]
          Length = 214

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 6/198 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E L  G  +A+PT++ Y L     +  A+ R+  I++    + L     D+S
Sbjct: 14  PRIIKQAAEMLRKGAILAVPTDSSYALVCHLDDKNAVDRMRRIRQINDKHHLTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKL 127
            +  +A VD     L KL  PGP T +L+         LS  + KT   RVP     + L
Sbjct: 74  ELANYARVDNRQYRLLKLATPGPYTFILEASKEVP-KRLSHPSRKTIGLRVPDRKGLQLL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--- 184
           +E  G PL   +    G+    N    +      E+  ++D G       +T++++    
Sbjct: 133 LEELGEPLLATTLIAPGETEPLNDADSILERFPHELDAVVDSGACPQ-QPTTVLDLTPMA 191

Query: 185 CEKKVRILRPGGLEIETL 202
                 ++R G   ++ +
Sbjct: 192 LNNSPVVVRQGMGSLKDI 209


>gi|327290899|ref|XP_003230159.1| PREDICTED: hypothetical protein LOC100563185 [Anolis carolinensis]
          Length = 874

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 88/206 (42%), Gaps = 11/206 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  E +  G    IPT+TVY LA     P A+ + Y  K++    P+   +S + 
Sbjct: 614 ASSVKQVAEIMKQGGACGIPTDTVYVLAAACNRPDAVEKAYNTKRQAEDRPMSLWISSLK 673

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-----TANLKTACFRVP-C 121
            ++       P+     +  W  P++LV+      D   L          ++   R+P C
Sbjct: 674 QLEPVKRLFSPILWDFMEAAWASPISLVIPRGEWLDYLGLKDSAKYVGTPQSIAIRIPDC 733

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             T  LI+  G P+ + SAN +G+   T+   +  + +  ++  ++  G S   + ST+V
Sbjct: 734 SVTTHLIDLVG-PITVTSANPTGEADTTHHNQVF-AKLGNKVDAVLCAGPSPENIASTVV 791

Query: 182 NVQC--EKKVRILRPGGLEIETLKRA 205
           +        +   R G +    + + 
Sbjct: 792 DCTKIESGNIGFFRVGIVPKTQVLQI 817


>gi|225012714|ref|ZP_03703149.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-2A]
 gi|225003247|gb|EEG41222.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-2A]
          Length = 182

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 6/184 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L+    I  PT+TV+G+  D+  P  + ++Y+IK+R     LI  V DI M+K
Sbjct: 2   IDEVLAALEKKQTILYPTDTVWGIGGDATAPEVVEKIYKIKQRADHKALIVLVKDIEMLK 61

Query: 72  KHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           ++   +  ++    +     P TLV       ++         +   R+P   F ++L+ 
Sbjct: 62  EYVQEIPEVAFSFLEE--ERPTTLVYPQ--GINLADNLLGQDGSVGIRIPKHSFCQQLLT 117

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           ++G P+   SAN SG  +  N   I S  +     ++     +     S ++ ++ +  V
Sbjct: 118 SFGKPIISTSANISGSETPKNFNTIDSKVLEGVDYVVHLQKKNNQNQPSRVLKIKADGTV 177

Query: 190 RILR 193
            ILR
Sbjct: 178 LILR 181


>gi|68249235|ref|YP_248347.1| translation factor SUA5 [Haemophilus influenzae 86-028NP]
 gi|81336361|sp|Q4QMR0|RIMN_HAEI8 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|68057434|gb|AAX87687.1| predicted translation factor SUA5 [Haemophilus influenzae 86-028NP]
          Length = 183

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
               + ++          +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSHLQGKYERPTTWIVPAKSTT--SHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  +      S I +++  + 
Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RLQFGADFP-VLDEIVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|145642211|ref|ZP_01797778.1| predicted translation factor SUA5 [Haemophilus influenzae R3021]
 gi|145273071|gb|EDK12950.1| predicted translation factor SUA5 [Haemophilus influenzae 22.4-21]
          Length = 183

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--SHFLTGKFDSIAVRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +  S    + P ++D  +      S I +++  + 
Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RSQFSVDFP-VLDEIVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|119898405|ref|YP_933618.1| hypothetical protein azo2114 [Azoarcus sp. BH72]
 gi|119670818|emb|CAL94731.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 210

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 4/195 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+A E +  G  +A PT++ Y L   + +   + R+  I+     +       D+S
Sbjct: 14  PRLIRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVDERHQFTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD     L K   PG  T +L+         +     KT   R+P       L
Sbjct: 74  EIATYARVDNSQYRLLKAVTPGAYTFILEGTRELP-RRVLHPKRKTIGLRIPEHAVVSAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   + K++ L+I+ G       +T+V++    
Sbjct: 133 LAELGEPLLSSTLLLPDEDLPLTDPEEIRDRLEKQVDLVIEAGFCGP-EATTVVDLTSGV 191

Query: 188 KVRILRPGGLEIETL 202
            V ++R G  E+  L
Sbjct: 192 PV-LVRAGRGELAPL 205


>gi|229847438|ref|ZP_04467538.1| hypothetical protein CGSHi7P49H1_08654 [Haemophilus influenzae
           7P49H1]
 gi|229809676|gb|EEP45402.1| hypothetical protein CGSHi7P49H1_08654 [Haemophilus influenzae
           7P49H1]
          Length = 183

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +  S    + P ++D  +      S I +++  + 
Sbjct: 122 EITGFALTSTSANLTGEPPCRIADEV-RSQFGSDFP-VLDEIVGGALNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|145629659|ref|ZP_01785456.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae 22.1-21]
 gi|144978170|gb|EDJ87943.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae 22.1-21]
          Length = 183

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--SHFLTGKFDSIAVRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  +      S I +++  + 
Sbjct: 122 ELTGFTLTSTSANLTGEPPCRTADEV-RLQFGADFP-VLDEIVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|238059036|ref|ZP_04603745.1| hypothetical protein MCAG_00002 [Micromonospora sp. ATCC 39149]
 gi|237880847|gb|EEP69675.1| hypothetical protein MCAG_00002 [Micromonospora sp. ATCC 39149]
          Length = 206

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + +     IA PT++ + L     N   + R+ EI+     +       D +
Sbjct: 14  PRTIGQVADLIRRDGLIAYPTDSCFALGCRLGNKNGLDRIREIRHLDTGHHFTLVCHDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +        K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QLGQFVHLGNAVFRAVKAATPGSYTFILPATKEVP-RRLLHPKKKTVGVRIPAHTVAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G          +   +   +  ++D G       +T+V+   + 
Sbjct: 133 LAELGEPLLSSTLLLPGDDEPMTQGWEIKERLDHVVDAVLDSGDCGT-EPTTVVDF-SDG 190

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G  +    +
Sbjct: 191 EPEIVRVGAGDPSRFE 206


>gi|328948017|ref|YP_004365354.1| Sua5/YciO/YrdC/YwlC family protein [Treponema succinifaciens DSM
           2489]
 gi|328448341|gb|AEB14057.1| Sua5/YciO/YrdC/YwlC family protein [Treponema succinifaciens DSM
           2489]
          Length = 193

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 20/198 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNP-------TAIRRLYEIKKRPAMNPL 60
           +  + R A +FL  G    +PT+TVYG +  + N         A  ++ +IK R    P 
Sbjct: 6   NEESARIAADFLKCGKICVLPTDTVYGFSGIAENSLQAKFGTDA--KIRKIKGREEKKPF 63

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I  VS    + K++    +   LA+  WPG LT+++ L          +    T  FR P
Sbjct: 64  IQLVSSPDEISKYSDF-KIPEQLAQK-WPGALTVIVPLKFP------FSEKNATVAFRCP 115

Query: 121 CGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + +I   G P+   S NRSG   + +V   +      E+ LI+D G  K  L ST
Sbjct: 116 GDLWLRNVIAECGFPIYSTSVNRSGSPVLDSVCK-IEKEFSNEVDLIVDDGDKKGSLPST 174

Query: 180 IVNVQCEKKVRILRPGGL 197
           IV ++ +   ++LR G +
Sbjct: 175 IVLLKNDG-WKVLRQGSV 191


>gi|24212721|ref|NP_710202.1| putative translation factor Sua5 [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45655934|ref|YP_000020.1| hypothetical protein LIC10020 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193354|gb|AAN47220.1| putative translation factor Sua5 [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45599167|gb|AAS68657.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 202

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 6/190 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +   L++  + L  G     PT+TVY L  DS++   + +LYE+K      PL      I
Sbjct: 11  EKRKLQQISDQLSQGKIYIFPTDTVYALLADSQSKLGVEKLYELKNISKNQPLSLICPSI 70

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
           S+   +   +   +  L K   PGP T +            S    K    R+P     +
Sbjct: 71  SIASNYIEHLSNDAFRLMKKITPGPFTFITSANKHLPRVSFSNQKEKQIGIRIPDAIYLQ 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L++ + +PL   S   + +  I      L       +  I+DGGI K+ L STI+++  
Sbjct: 131 ELMKIHPNPLTSTSVFANDEFIIEVDS--LEKIYGSRVEGIVDGGILKVEL-STILDLTG 187

Query: 186 EKKVRILRPG 195
           ++ + I+R G
Sbjct: 188 DE-ITIIREG 196


>gi|218885947|ref|YP_002435268.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756901|gb|ACL07800.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 218

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 11/203 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L  A   L AG  +  PTET +G+   + +  A+  +Y +K+R     L   V  +  + 
Sbjct: 13  LDDAAALLRAGRVVVFPTETFFGVGCLATHAGAVDEVYRVKRRAHRLALPVIVGHVDQLT 72

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIE 129
           + A+ +  ++  LA+ FWPGPL+++L            T        R  P    ++L  
Sbjct: 73  QVAAPMGHVAEGLARRFWPGPLSILLPAAPGVPEP--LTGGTGRVAVRLTPHPAARELCL 130

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK-- 187
             G PL   SAN SG+ ++T    +    + +   ++        GL ST+V V      
Sbjct: 131 RAGGPLVASSANISGRPAVTRAMDLDPELLAEVAGVLDLPPAPPGGLPSTLVEVLDGGCI 190

Query: 188 -----KVRILRPGGLEIETLKRA 205
                ++R+LR G + ++ L  A
Sbjct: 191 GDGAPRLRVLRAGAVSVQALSDA 213


>gi|302539809|ref|ZP_07292151.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302457427|gb|EFL20520.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 206

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +    + + +G  +A PT++ + L     N   I R+  I+     +       D S
Sbjct: 14  ARTISNVADRIRSGALVAYPTDSCFALGCQMGNRDGISRIRSIRNLDDRHHFTLVCQDFS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 74  QLGQFVHIDKDVFRAIKASTPGSYTFILPATKDVP-RALPHPKKKTVGVRIPDHTVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   +  ++D G       +T+++   + 
Sbjct: 133 LAEIGEPLLSSTLLLPGEDEPMTQGWEIKERLDHVVDAVVDSGDCGT-EPTTVIDF-SDG 190

Query: 188 KVRILRPGG 196
           + +I+R G 
Sbjct: 191 EAQIVRRGA 199


>gi|307324891|ref|ZP_07604096.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu
           4113]
 gi|306889389|gb|EFN20370.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces violaceusniger Tu
           4113]
          Length = 206

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 6/190 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +    + + +G  +A PT++ + L     N   I ++  I+K    +       + +
Sbjct: 14  QRTISNVADRIRSGGLVAYPTDSCFALGCQMGNRDGINQIRSIRKLDDRHHFTLMCQNFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFT-KK 126
            + +   +D       K   PG  T +L   +T D+   L     KT   R+P     + 
Sbjct: 74  QLGQFVHIDKDVFRAIKAATPGSYTFILP--ATKDVPRQLPHPKKKTVGVRIPDHVVTQA 131

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L+   G PL   +     +         +   +   +  ++D G       +T+++    
Sbjct: 132 LLAELGEPLLSSTLLLPDEDEPMTQGWEIKERLDHVVDAVVDSGDCGT-EPTTVIDFSS- 189

Query: 187 KKVRILRPGG 196
            +  I+R G 
Sbjct: 190 GEAEIVRRGA 199


>gi|167948397|ref|ZP_02535471.1| translation factor [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 163

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 56/139 (40%), Gaps = 4/139 (2%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            +  G  +A PTE+V+GL  D  NP A+ RL  +K+RP    LI   SD + ++      
Sbjct: 1   MILGGGILAYPTESVFGLGCDPLNPQAVFRLLRLKQRPVSKGLILIASDFNQLQPFIDQL 60

Query: 78  P-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
           P   L      WPGP T VL    T  +      +      RV        L    G PL
Sbjct: 61  PSQQLEPVIQSWPGPHTWVLPAAPT--LPFWLRGDHSGIAVRVTNHPLAAALCRASGRPL 118

Query: 136 AIPSANRSGQISITNVKHI 154
              SANRS      N   +
Sbjct: 119 VSTSANRSNHPPARNALQV 137


>gi|330468832|ref|YP_004406575.1| translation factor SUA5 [Verrucosispora maris AB-18-032]
 gi|328811803|gb|AEB45975.1| translation factor SUA5 [Verrucosispora maris AB-18-032]
          Length = 206

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 4/193 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L     IA PT++ + L     N   + R+ EI+   + +       D +
Sbjct: 14  PRIIGQVVDLLRRDGLIAYPTDSCFALGSQLGNKDGMDRIREIRHLDSGHHFTLVCRDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     +T   R+P    T+ L
Sbjct: 74  QLGQFVQLDNAVFRAVKAATPGQYTFILPATKEVP-RRLLHPRKRTVGVRIPDHPVTRAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G PL   +    G          +   +   +  ++D G       +T+V+   E 
Sbjct: 133 LDELGEPLLSSTLLLPGDDEPLTQGWEIKERLDHAVDAVVDAGDCGT-EPTTVVDF-SEG 190

Query: 188 KVRILRPGGLEIE 200
           +  I+R G  + E
Sbjct: 191 EPEIVRVGAGDPE 203


>gi|254362317|ref|ZP_04978429.1| possible translation factor [Mannheimia haemolytica PHL213]
 gi|261493259|ref|ZP_05989786.1| putative translation factor [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496498|ref|ZP_05992878.1| putative translation factor [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153093897|gb|EDN74825.1| possible translation factor [Mannheimia haemolytica PHL213]
 gi|261307701|gb|EEY09024.1| putative translation factor [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311109|gb|EEY12285.1| putative translation factor [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 184

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +    L     +A PTE V+GL  + ++  A+R+L  +K+RP    LI   SD+  +  +
Sbjct: 6   EIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLKQRPEEKGLILLASDLKYLLPY 65

Query: 74  ---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGFTKKL 127
              A +   +           +T ++ + +T  +    T    +   R   VP     +L
Sbjct: 66  IDEARMTEQAWQRLSHIGEQAITWIVPVKNT--VPSYLTGKFDSIAVRLCNVPA--VVQL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G  L   SAN SG+    N K ++     ++ P ++          S I ++  ++
Sbjct: 122 CEASGVALTSTSANLSGEPPCRNAKEVI-DQFGQDFP-VLHADTLGRENPSEIRDIFSQQ 179

Query: 188 KVR 190
             R
Sbjct: 180 IFR 182


>gi|114777136|ref|ZP_01452156.1| Sua5/YciO/YrdC/YwlC [Mariprofundus ferrooxydans PV-1]
 gi|114552657|gb|EAU55117.1| Sua5/YciO/YrdC/YwlC [Mariprofundus ferrooxydans PV-1]
          Length = 205

 Score =  136 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 5/191 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             +R+A + L  GL +A+PT+T Y L        A+  + ++++    +      +D+SM
Sbjct: 17  RQVRRAADLLRQGLFVAVPTDTTYALMCRPDATDAVAAIRQLRRLDDSHLWAVACADLSM 76

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
                 +D  +  + K   PGP T +L   ++  +        +    R+P     + L+
Sbjct: 77  ASACVRMDNHAHRILKRCLPGPYTFILP--ASAALPRRIFGKRRDVGIRMPDHPVCRMLL 134

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   +    G+             +      ++D G   I + ST+V++ C+ +
Sbjct: 135 EECGEVLLATTLLLPGEDEPAFDPDEFVPQLKHFSCAVLDAGWGGI-VPSTVVDL-CDGE 192

Query: 189 VRILRPGGLEI 199
             + R G  + 
Sbjct: 193 PVLWRDGAGDW 203


>gi|224823451|ref|ZP_03696560.1| SUA5/yciO/yrdC domain protein [Lutiella nitroferrum 2002]
 gi|224603906|gb|EEG10080.1| SUA5/yciO/yrdC  domain protein [Lutiella nitroferrum 2002]
          Length = 171

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 6/175 (3%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  +A  TE+ +GL  D  N  AIRR+  +K RP    LI   + ++ V+      
Sbjct: 1   MLQQGGVLAYSTESCFGLGCDPFNVAAIRRVLALKARPNHKGLIVIAASLAQVRPLIRPL 60

Query: 78  PLSLHL-AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPL 135
             +       +WPGP T +L   ++  + PL          RV        L    G  L
Sbjct: 61  SAAEEAELARYWPGPYTFLLP--ASPRVPPLLRGRHDKIAVRVTAHGEAAALCRALGTAL 118

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              SANR+GQ S+   +    +       L + G I      STI++ +  + +R
Sbjct: 119 VSTSANRAGQTSLKTAQACRRAF--GAAVLTLPGRIGGSRRPSTIIDFETGRVLR 171


>gi|297665439|ref|XP_002811084.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
           [Pongo abelii]
          Length = 350

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 138 TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 197

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 198 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 254

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V
Sbjct: 255 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 312

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 313 DLSVPGKFGIIRPGC 327


>gi|152978022|ref|YP_001343651.1| SUA5/yciO/yrdC domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|212277664|sp|A6VL69|RIMN_ACTSZ RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|150839745|gb|ABR73716.1| SUA5/yciO/yrdC domain [Actinobacillus succinogenes 130Z]
          Length = 183

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  E L     +A PTE V+GL  +  + +A+++L ++K+RP    LI    D+  +   
Sbjct: 5   EIAEKLKQNQVVAYPTEAVFGLGCNPLSESAVKKLLDLKQRPIDKGLILIAPDLLYLLPF 64

Query: 74  ASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
              + L+          +  P+T V+ +   T      T    +   R+       +L  
Sbjct: 65  IDTERLNSRQISRLTANYSHPVTWVVPVKFGT--PKFLTGRFNSIAVRISDHPAVAELCS 122

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G  L   SAN SG         + S     +   ++D  +      S I N+  ++ +
Sbjct: 123 LTGFALTSTSANLSGLPPCKTAAEVRSQF--GQFFPVLDYPVGHAEKPSEIRNLLTDQLI 180

Query: 190 RI 191
           R 
Sbjct: 181 RE 182


>gi|16272599|ref|NP_438816.1| hypothetical protein HI0656 [Haemophilus influenzae Rd KW20]
 gi|260581367|ref|ZP_05849182.1| trigger factor [Haemophilus influenzae RdAW]
 gi|1176855|sp|P44807|RIMN_HAEIN RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|1573655|gb|AAC22315.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260091962|gb|EEW75910.1| trigger factor [Haemophilus influenzae RdAW]
          Length = 183

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P +++  + +    S I +++  + 
Sbjct: 122 ELTGFALTSTSANLTGEPPCRTADEV-RLQFGSDFP-VLNEMVGRAHNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|328777852|ref|XP_001120082.2| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Apis
           mellifera]
          Length = 270

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +L  A   L     IAIPT+T+YGLA    + ++I +LYEIKKR    PL   V++I+
Sbjct: 61  KRSLAVAITLLQQNEIIAIPTDTIYGLAGIVSSTSSIEKLYEIKKRDKDKPLSISVNNIN 120

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            +KK   VD L   L  L  PGP+T+++       ++P    N  T   R+P       I
Sbjct: 121 DIKKWGIVDHLPQDLLSLILPGPITIIVKRTPA--LNPALNPNHDTVGIRIPSFKFISYI 178

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--------GISKIGLESTI 180
                PLA+ SAN S + S          ++   +  I             SK    STI
Sbjct: 179 SAITGPLALTSANLSNEKSCLYASE--FQNLWPMLGGIFYDSNNFGKSKSKSKSRKGSTI 236

Query: 181 VNVQCEKKVRILRPG 195
           V++      +I+R G
Sbjct: 237 VDLSKPGYYKIVRAG 251


>gi|89892405|gb|ABD78986.1| HI0656-like protein [Haemophilus influenzae]
          Length = 183

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAKALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPSKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +  S    + P ++D  +      S I +++  + 
Sbjct: 122 ELTGFTLTSTSANLTGEPPCRTADEV-RSQFSVDFP-VLDEIVGGARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|5688851|dbj|BAA82702.1| Orf5 [Streptomyces coelicolor]
          Length = 200

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++ +  + + +G  IA PT++ Y L     +   I R+  I++    +       D +
Sbjct: 8   PRSIAQVADSVRSGALIAYPTDSCYALGCRLGSRDGIDRIRSIRQLDNRHHFTLVWQDFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 68  QLGQFVQIDNDVFRAIKASTPGSYTFILPATREVP-RALQHPKKKTVGVRIPDHVVTQAL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  ++D G       +T+V+     
Sbjct: 127 LAELGEPLLSSTLLLPDEEEPMTQGWEIKDRLDHVLDAVVDSGDCGT-EPTTVVDFSG-G 184

Query: 188 KVRILRPGG 196
           +  I+R G 
Sbjct: 185 EAEIVRHGA 193


>gi|325576777|ref|ZP_08147392.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160983|gb|EGC73101.1| Sua5/YciO/YrdC/YwlC family protein [Haemophilus parainfluenzae ATCC
           33392]
          Length = 183

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++    L     +A PTE V+GL  +  + +A+R+L ++K+RP    LI    ++  ++
Sbjct: 3   IQQIAACLMQDEVVAYPTEAVFGLGCNPLSESAVRKLLDLKQRPIEKGLILVAPNLHFLQ 62

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127
           +      LS          +  P+T V+   +  ++    T    +   R       K L
Sbjct: 63  QFIDFSHLSDEQLSRLQAQYDHPITWVVP--AKAEVPHFLTGQFNSIAVRLCTHPAVKAL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G  L   SAN +G+    N   +  S    + P ++D  + +    S I ++   +
Sbjct: 121 CEKTGFALTSTSANLTGKSPCRNADAV-RSQFGADFP-VLDEVVGQAQNPSEIRDLLTNQ 178

Query: 188 KVR 190
             R
Sbjct: 179 LFR 181


>gi|237841787|ref|XP_002370191.1| yrdC domain protein [Toxoplasma gondii ME49]
 gi|211967855|gb|EEB03051.1| yrdC domain protein [Toxoplasma gondii ME49]
 gi|221482657|gb|EEE20995.1| yrdC domain protein, putative [Toxoplasma gondii GT1]
 gi|221503150|gb|EEE28856.1| yrdC domain protein, putative [Toxoplasma gondii VEG]
          Length = 762

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV--- 76
             G  +A PTETVYGL   +  P A  R++  KKRPA +PLICHV  +    +       
Sbjct: 156 RRGGLVAFPTETVYGLGAAATLPHACSRVFRCKKRPASDPLICHVVSVQQAFEQVYDLDE 215

Query: 77  --DPLSLH------------------LAKLFWPGPLTLV------LDLLSTTDIHPLSTA 110
                +                    LA  FWPGPL++V       D      +    TA
Sbjct: 216 GETEEAARGESLSLQEKRDLRVLIATLADAFWPGPLSIVAKGKILEDRRDGKGVALAVTA 275

Query: 111 NLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
             +    R P       LI   G P+  PSANR G+IS T   H+++  
Sbjct: 276 GTRFVAARCPNHPYALSLIAAAGVPIVAPSANRFGRISPTRASHVINQF 324


>gi|95007168|emb|CAJ20389.1| hypothetical protein, conserved [Toxoplasma gondii RH]
          Length = 663

 Score =  135 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV--- 76
             G  +A PTETVYGL   +  P A  R++  KKRPA +PLICHV  +    +       
Sbjct: 56  RRGGLVAFPTETVYGLGAAATLPHACSRVFRCKKRPASDPLICHVVSVQQAFEQVYDLDE 115

Query: 77  --DPLSLH------------------LAKLFWPGPLTLV------LDLLSTTDIHPLSTA 110
                +                    LA  FWPGPL++V       D      +    TA
Sbjct: 116 GETEEAARGESLSLQEKRDLRVLIATLADAFWPGPLSIVAKGKILEDRRDGKGVALAVTA 175

Query: 111 NLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
             +    R P       LI   G P+  PSANR G+IS T   H+++  
Sbjct: 176 GTRFVAARCPNHPYALSLIAAAGVPIVAPSANRFGRISPTRASHVINQF 224


>gi|326673468|ref|XP_003199892.1| PREDICTED: hypothetical protein LOC335392 [Danio rerio]
          Length = 876

 Score =  135 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 84/206 (40%), Gaps = 11/206 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S ++ +  E +  G    +PT+TVY L      P A+ + Y +KK+    P+   V+ I 
Sbjct: 607 STSVHQIAEIMKNGGICGMPTDTVYVLVAACNRPQAVEKAYSVKKQAKERPMSLWVASIK 666

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLS-----TTDIHPLSTANLKTACFRVP-C 121
            ++     + P+     +  WP  ++LV+                     ++   R P C
Sbjct: 667 QLEPVRKQISPILWDFMEAAWPSSISLVIARAPWMEFFGLGDSSKYIGTPQSIAIRNPDC 726

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                LI   G P+A+ SAN +G+   T+   +  + +  ++  ++  G S   + ST+V
Sbjct: 727 TVATHLINAVG-PIAVTSANPTGEADTTHHNQVY-AKLGDKVDGVLCDGPSPENIASTVV 784

Query: 182 NVQC--EKKVRILRPGGLEIETLKRA 205
           +       ++   R G +    + + 
Sbjct: 785 DCTKIESGQIGFFRVGLIPKSKVLQI 810


>gi|329122573|ref|ZP_08251154.1| SUA5/YciO/yrdC family domain protein [Haemophilus aegyptius ATCC
           11116]
 gi|327473124|gb|EGF18550.1| SUA5/YciO/yrdC family domain protein [Haemophilus aegyptius ATCC
           11116]
          Length = 183

 Score =  135 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIADALRQNQMVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPAKSTT--PHFLTGKFDSIAIRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  + +    S I +++  + 
Sbjct: 122 EITGFALTSTSANLTGEPPCRTADEV-RLQFGADFP-VLDEMVGRAHNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|116329499|ref|YP_799219.1| Sua5 family translation factor [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122243|gb|ABJ80286.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 202

 Score =  135 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 6/190 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  L++    L  G     PT+TVY L  DS++   + +LYE+K  P   PL      I
Sbjct: 11  ENRKLQQISTKLLEGGVYIFPTDTVYALVADSQSKLGVEKLYELKNIPKNQPLSLICPSI 70

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
           S+   +   +   +  L K   PGP T +            S    K    R+P     +
Sbjct: 71  SVASNYIEYLSNEAFRLMKKITPGPFTFITRANKHLPRVSFSNQKEKQIGIRIPDAIYLQ 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L++ + +PL   S   + +  I     +L       +  I+DGGI K+ L STI+N+  
Sbjct: 131 SLLKIHPNPLTSTSVFANDEFIIEVD--LLEQIYGARVEGIVDGGIVKMEL-STILNMTN 187

Query: 186 EKKVRILRPG 195
           ++ + I+R G
Sbjct: 188 DE-MTIIREG 196


>gi|229821388|ref|YP_002882914.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM
           12333]
 gi|229567301|gb|ACQ81152.1| Sua5/YciO/YrdC/YwlC family protein [Beutenbergia cavernae DSM
           12333]
          Length = 206

 Score =  135 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             A+ +    L A   IA PT++ Y L     N  A  R+  I++  + +      +D +
Sbjct: 14  PRAVAQIVAMLRADALIAYPTDSCYALGARVDNHDATERIRRIRQLDSRHEFTLVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D  +    +   PGP T VL          ++    +T   R+P     + +
Sbjct: 74  QLGRLVHLDNAAFRAIRAATPGPYTFVLPATPEVP-RRVAQEKKRTVGVRIPDHPVVRAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +     PL   +               +   +   +  ++D G   + + +T+V+     
Sbjct: 133 LRELDQPLLSSTLLLPDAEEPMTEGWQIKEQLDTVVDAVVDAGDCGV-VPTTVVDYSSGA 191

Query: 188 KVRILRPGG 196
              I+R G 
Sbjct: 192 P-EIMRVGA 199


>gi|302879854|ref|YP_003848418.1| SUA5/yciO/yrdC domain [Gallionella capsiferriformans ES-2]
 gi|302582643|gb|ADL56654.1| SUA5/yciO/yrdC domain [Gallionella capsiferriformans ES-2]
          Length = 184

 Score =  135 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 6/184 (3%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             + R    +L +G  IA PTE+ YGL  D  N +A+R+L  +K+RP    LI   SD  
Sbjct: 5   PASFRSIAAYLKSGGLIAYPTESCYGLGCDPLNRSAVRKLLRLKQRPQAKGLILIASDYR 64

Query: 69  MVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + ++   ++       K      +T ++ +  T         +  T   R+      ++
Sbjct: 65  QLARYLQPLNESGQARLKADGAKAITYLMPVKKTA--PRWLCGSHDTLAVRLTAHPLARQ 122

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L       L   SAN SG             S+  +   ++ G + K  + S I+     
Sbjct: 123 LCRGVKSALVSTSANLSGMRPAKTYAQC--QSLFGKQVWVLPGCVGKRKIPSRILAWADG 180

Query: 187 KKVR 190
           + +R
Sbjct: 181 RTIR 184


>gi|33339163|gb|AAQ14263.1|AF250397_1 dopamine receptor interacting protein 3 [Homo sapiens]
          Length = 223

 Score =  135 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 11  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 70

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 71  DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 127

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V
Sbjct: 128 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 185

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 186 DLSVPGKFGIIRPGC 200


>gi|85060221|ref|YP_455923.1| hypothetical protein SG2243 [Sodalis glossinidius str. 'morsitans']
 gi|123518722|sp|Q2NQQ7|RIMN_SODGM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|84780741|dbj|BAE75518.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 190

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +M  + S  +      L     IA PTE V+GL  +  + +A++ L  +K+RP    LI 
Sbjct: 1   MMIESSSQDVASLVIALRQQQVIAYPTEAVFGLGCNPDSESAVQALLALKQRPWQKGLIL 60

Query: 63  HVSDISMVKKHASVDPLSLH---LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
             +  + +K++   D L           WPGP+T V+ +  TT      T    +   RV
Sbjct: 61  VAAHYAQLKEYIDDDALDDAARSRIFASWPGPVTWVIPVCPTT--PSWLTGQHASLAVRV 118

Query: 120 PC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 ++L   +G PL   SAN +GQ    +   +    +     L++D  +      +
Sbjct: 119 SAFEPVRRLCLAFGKPLVSTSANLTGQPPARSADEV-RGQLGAAF-LVLDEAVEGRLNPT 176

Query: 179 TIVNVQCEKKVR 190
            I +    + +R
Sbjct: 177 EIRDALSGELIR 188


>gi|197121814|ref|YP_002133765.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K]
 gi|196171663|gb|ACG72636.1| Sua5/YciO/YrdC/YwlC family protein [Anaeromyxobacter sp. K]
          Length = 212

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 63/189 (33%), Positives = 90/189 (47%), Gaps = 5/189 (2%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
            AG  +  PTET YGL   + +  A+ RL   K RP   PL    +D   V + AS++  
Sbjct: 17  RAGGIVVYPTETFYGLGALASDDAALARLAAAKLRPEGKPLPLVAADREQVDRVASLEGA 76

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIP 138
           +  LA   WPGPLTLVL       +    TA   T   R+P     + L    G  L   
Sbjct: 77  AARLAGRLWPGPLTLVLPARPG--LSEAVTAGSGTVGVRIPGSEVARALARMAGGALVST 134

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN SG      V   L +++  ++  ++D G +  GL ST+V V  E  +R++RPG + 
Sbjct: 135 SANLSGGPPPDRV-EALDAALRAQVDHVLDAGPTPGGLPSTVVAVAGE-ALRVVRPGAVS 192

Query: 199 IETLKRAIS 207
           IE +  A+ 
Sbjct: 193 IEQVTAALG 201


>gi|284006128|emb|CBA71369.1| RNA-binding protein [Arsenophonus nasoniae]
          Length = 189

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             + R     L+ G  IA PTE V+GL  D  N   +R+L  +K+R     LI    D  
Sbjct: 6   PPSFRNIIAALNEGKIIAYPTEAVFGLGCDPDNEKTVRQLLLLKQRSWKKGLILIAGDYE 65

Query: 69  MVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
            +  +   +    L   +        +T V+     T      T    +   R+      
Sbjct: 66  QLIPYIDDNKLTNLQKEMMLSTGSKSITWVVPARKNT--PKWLTGKFDSIAVRITNFELI 123

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           KKL   YG PL   SAN +G       + ++ +    ++  ++DG +      S I ++ 
Sbjct: 124 KKLCFLYGKPLISTSANLNGLSPCRTKEEVI-AQFNGQV-SVLDGSVGGRKNPSEIRDII 181

Query: 185 CEKKVR 190
                R
Sbjct: 182 TGHLYR 187


>gi|260583205|ref|ZP_05850984.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae NT127]
 gi|260093762|gb|EEW77671.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae NT127]
          Length = 183

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--SYFLTGKFDSIAVRLCDHSSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  +      S I +++  + 
Sbjct: 122 ELVGFALTSTSANLTGEPPCRIADEV-RLQFGADFP-VLDETVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|302549025|ref|ZP_07301367.1| SUA5/YciO/YrdC/YwlC family protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302466643|gb|EFL29736.1| SUA5/YciO/YrdC/YwlC family protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 200

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + + A   +A PT++ Y L     +   I R+  I+K    +       D +
Sbjct: 8   PRTIGQIADSIRADALVAYPTDSCYALGCRLGSRDGIERIRTIRKLDDRHHFTLVCQDFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 68  QLGQFVRIDNDVFRAIKASTPGSYTFILPATREVP-RMLQHPKKKTVGVRIPDHVVTQAL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   +  ++D G       +T+++     
Sbjct: 127 LTELGEPLLSSTLLLPGEEEPMTQGWEIKDELDHVLDGVVDSGECGT-EPTTVIDFSG-G 184

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G  +    +
Sbjct: 185 EAEIVRRGAGDTSRFE 200


>gi|239933051|ref|ZP_04690004.1| hypothetical protein SghaA1_32818 [Streptomyces ghanaensis ATCC
           14672]
          Length = 206

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + + +   IA PT++ Y L     +   I R+  I+K    +       + +
Sbjct: 14  PRTIAQVADGIRSDALIAYPTDSCYALGCRLGSRDGIDRIRTIRKLDDRHHFTLVCQNFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 74  QLGQFVRIDNDVFRAVKASTPGSYTFILPATKEVP-RMLQHPKKKTVGVRIPDHVVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   + +++D G       +T+++     
Sbjct: 133 LAELGEPLLSSTLLLPGEDEPMTQGWEIKDRLDHVVDVVLDSGDCGT-EPTTVIDFSG-G 190

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G  ++   +
Sbjct: 191 EAEIVRRGAGDVSRFE 206


>gi|254386122|ref|ZP_05001435.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194344980|gb|EDX25946.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 200

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  +    + +  G  +A PT++ Y L     N   + R+  I+     +       + +
Sbjct: 8   ARTISSIADSIRGGALVAYPTDSCYALGCQLGNRDGLNRIRTIRNLDDRHHFTLVCQNFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +  ++D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 68  QLGQFVNLDNNVFRAVKAATPGSYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  +ID G       +T+++     
Sbjct: 127 LAELGEPLLSSTLLLPDEAEPMTQGWEIKDRLDHVVDSVIDSGECGT-EPTTVIDFSS-G 184

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G  +    +
Sbjct: 185 EAEIVRRGAGDPSRFE 200


>gi|148826708|ref|YP_001291461.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae PittEE]
 gi|212277676|sp|A5UE77|RIMN_HAEIE RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|148716868|gb|ABQ99078.1| fructose 1,6-bisphosphatase II [Haemophilus influenzae PittEE]
          Length = 183

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +    L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIANALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEQINDEQLSRLQGKYERPTTWIVPSKSTT--PYFLTGKFDSIAVRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  +      S I +++  + 
Sbjct: 122 ELTGFALTSTSANLTGEPPCRIADEV-RLQFGADFP-VLDETVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|218654185|emb|CAB55118.2| C. elegans protein Y48C3A.18a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 216

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 14/210 (6%)

Query: 2   QIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +T      A+  A      G  +A+PT+T+YG++   +      RLY +K+RP   
Sbjct: 6   RILRLTADNIEEAIDAAVCVFLRGGIVALPTDTLYGISTLLQYSD---RLYALKQRPYEK 62

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PL   +   + + K  S   +S  LA    PGP+TL+ + L    +       +     R
Sbjct: 63  PLGIFLPSPTAM-KLVSRQTISDELANCLLPGPVTLMFERLPC--LPAEFNPGVVNVACR 119

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGG-ISKIG 175
           VP C     + +  G PLA  SAN SG  ++ T++ H     +   I LI+D G I   G
Sbjct: 120 VPDCPIVSTICKKLGQPLAQTSANVSGSSLNPTSIDH--FRDLHPNIDLILDAGSIISSG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRA 205
             STIV++  E   RI+R G  E ET+++ 
Sbjct: 178 EGSTIVDLTVESGFRIVRSGCAEKETMQKL 207


>gi|30908964|gb|AAP37032.1| ischemia/reperfusion inducible protein [Mus musculus]
          Length = 263

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +  +PGP+TLV++   + +++       +    R+P   F   L
Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 167

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +G PLA+ SAN S Q S  +V+      +   + L+IDGG        +  L ST+V
Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 225

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 226 DLSVPGKFGIIRPGC 240


>gi|91070122|gb|ABE11046.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone ASNC729]
          Length = 193

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 8/192 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L +GLPI  PT+T+  +    +   A   +Y  K+R    PLI   S+   +  
Sbjct: 7   KSALKTLKSGLPIIFPTDTLPAIGCLPKFSNA---IYTFKRRDRDKPLILMGSEPKQLID 63

Query: 73  HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           +          ++A  +WPG LT+V+          + T+N  T   RVP  +  + +  
Sbjct: 64  YVHESAKEDYENIASKYWPGALTMVIPASEKQT--KILTSNDLTLGLRVPNLYMAQSLMK 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG    T V+ I       +I   I  G  + G  STI+  +     R
Sbjct: 122 ETGPLLTSSANISGLKGSTTVEDIALDFPSLKILGPIPWGK-RSGKASTIIFWKKSGDWR 180

Query: 191 ILRPGGLEIETL 202
           +LR G + +  L
Sbjct: 181 LLREGEVLVREL 192


>gi|325114035|emb|CBZ49593.1| sua5/YciO/YrdC/YwlC family protein, related [Neospora caninum
           Liverpool]
          Length = 791

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 72/179 (40%), Gaps = 40/179 (22%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA----- 74
             G  +A PTETVYGL   +  P A  R++  KKRPA +PLICHV  +    +       
Sbjct: 150 RRGGLVAFPTETVYGLGAAATVPAACNRVFFCKKRPASDPLICHVVSVQQAFEQVFDLDE 209

Query: 75  --------------------SVDPLSLH--------LAKLFWPGPLTLV------LDLLS 100
                                  P            LA  FWPGPL++V       D   
Sbjct: 210 EDSEQSARDRLTENPTAFPRKFTPQERRDLRLLIETLADAFWPGPLSIVAKGKILEDRKD 269

Query: 101 TTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
            T +    TA  +    R P       LI   G P+A PSANR G+IS T  KH+L+  
Sbjct: 270 GTGVALAVTAGTRLVAVRCPNHPYALSLIAAAGVPIAAPSANRFGRISPTRAKHVLNQF 328



 Score = 45.8 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 278 AAFNLFNYMKIADD----SGASSIAFSSIP---NHGLGIAINNRLERAAAPRNQSQR 327
           AA N+F  +  A+      GA +I  ++ P       G+A+ +RL RAA+ +    R
Sbjct: 720 AAGNVFAALHEAEAIGLQLGAKAILINAAPLLKGREAGLAVFDRLFRAASGKQAQMR 776


>gi|291441401|ref|ZP_06580791.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291344296|gb|EFE71252.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 200

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + + +   IA PT++ Y L     +   I R+  I+K    +       + +
Sbjct: 8   PRTIAQVADGIRSDALIAYPTDSCYALGCRLGSRDGIDRIRTIRKLDDRHHFTLVCQNFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 68  QLGQFVRIDNDVFRAVKASTPGSYTFILPATKEVP-RMLQHPKKKTVGVRIPDHVVTQAL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    G+         +   +   + +++D G       +T+++     
Sbjct: 127 LAELGEPLLSSTLLLPGEDEPMTQGWEIKDRLDHVVDVVLDSGDCGT-EPTTVIDFSG-G 184

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G  ++   +
Sbjct: 185 EAEIVRRGAGDVSRFE 200


>gi|159902895|ref|YP_001550239.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888071|gb|ABX08285.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9211]
          Length = 196

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 14/207 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ+      N ++K    L+ G P+  PT+T+  LA   ++ +   +L+EIK R  M PL
Sbjct: 1   MQLSLFDSCNLVKK----LNEGSPVVFPTDTLPALAALPKHSS---QLWEIKNRSRMKPL 53

Query: 61  ICHVSDISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           I        + K    +V   ++++A  +WPGPLT+VL   S++++  L      +   R
Sbjct: 54  ILMGESPKQLFKFVYPNVLEDAIYMANRYWPGPLTMVLP--SSSNLVGLLNPGGSSIGLR 111

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P C   KK +   G PLA  SAN SGQ   +     ++        L         GL 
Sbjct: 112 IPECDLAKKFLAKSG-PLATTSANLSGQ-KPSIDPEEITKCFPGFPLLGPIPWPKSSGLA 169

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKR 204
           ST++  Q      ++R G +  E L++
Sbjct: 170 STVIAWQGPGNWHLIRRGAVIPENLEK 196


>gi|116332436|ref|YP_802154.1| Sua5 family translation factor [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116126125|gb|ABJ77396.1| Translation factor, SUA5 family [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 202

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 6/190 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  L++    L  G     PT+TVY L  DS++   + +LYE+K  P   PL      I
Sbjct: 11  ENRKLQQISTKLLEGGIYIFPTDTVYALVADSQSKLGVEKLYELKNIPKNQPLSLICPSI 70

Query: 68  SMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TK 125
           S+   +   +   +  L K   PGP T +            S    K    R+P     +
Sbjct: 71  SVASNYIEYLSNEAFRLMKKITPGPFTFITRANKHLPRVSFSNQKEKQIGIRIPDAIYLQ 130

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L++ + +PL   S   + +  I     +L       +  I+DGGI K+ L STI+N+  
Sbjct: 131 SLLKIHPNPLTSTSVFANDEFIIEVD--LLEQIYGARVEGIVDGGIVKMEL-STILNMTN 187

Query: 186 EKKVRILRPG 195
           ++ + I+R G
Sbjct: 188 DE-MTIIREG 196


>gi|226227089|ref|YP_002761195.1| hypothetical protein GAU_1683 [Gemmatimonas aurantiaca T-27]
 gi|226090280|dbj|BAH38725.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 224

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 6/203 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +LR     L AG  +A PTETVYG    + +  ++  L  +K RP   P +  + D  
Sbjct: 18  EASLRDTILHLGAGRVLAYPTETVYGFGT-AVDHDSVEALVRMKGRPPGKPFLLLIGDPG 76

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
            V +    +   +  LA  FWPGPLTLVL                  A    P    ++L
Sbjct: 77  QVARLDLHLPTYAAQLAARFWPGPLTLVLRGGDQRVPARARGPEGGVAVRWTPHPGLQRL 136

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           +  YG P+   SANR           I     + I +    ++DGG       ST+V+  
Sbjct: 137 LTAYGEPITSTSANRPRVPPAMTASEIVTQWPAEIHRGTLRVLDGGRLAPSDSSTVVDCT 196

Query: 185 CEKKVRILRPGGLEIETLKRAIS 207
             ++ R++RPG L    L+  ++
Sbjct: 197 G-RRARVIRPGALPAPLLRTCVA 218


>gi|225012824|ref|ZP_03703258.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-2A]
 gi|225003098|gb|EEG41074.1| Sua5/YciO/YrdC/YwlC family protein [Flavobacteria bacterium
           MS024-2A]
          Length = 205

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 13/194 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAI---RRLYEIKKRPAMNPLICHV 64
           +   + +A   L+ G  I  PT+TVYGL   S N   +    ++ ++K    + PL    
Sbjct: 13  NPKHIEEAARILNQGGLIIFPTDTVYGLGCLSNNKKGLSRFAKIRDVK--IELAPLSFLF 70

Query: 65  SDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
            DI  +  +   ++  +  L K   PGP  L+++        P      KT   R+    
Sbjct: 71  QDIRELTNYVQHMNSTTFKLVKKLLPGPYALIMNAAPKL---PKPFHKRKTIGVRISSHV 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQI-SITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
             ++L+     PL   S +   +I   T    +L      +I L++  G  +  + ST++
Sbjct: 128 VLQQLLPLLDAPLITSSLHDPDEILDYTTDPEVLFQQWESKIDLMLSDGYGQ-NIPSTVL 186

Query: 182 NVQCEKKVRILRPG 195
           ++  E+  +I+R G
Sbjct: 187 DLT-EEPFQIIREG 199


>gi|88811389|ref|ZP_01126644.1| Putative translation factor, SUA5/yciO/yrdC-like protein
           [Nitrococcus mobilis Nb-231]
 gi|88791278|gb|EAR22390.1| Putative translation factor, SUA5/yciO/yrdC-like protein
           [Nitrococcus mobilis Nb-231]
          Length = 188

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 9/180 (5%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-A 74
              L AG  IA PTE VYGL  D R   A+ RL E+K R A   LI    +   + ++ A
Sbjct: 14  AALLSAGGVIAYPTEAVYGLGCDPRRRDAVVRLLELKGRSARKGLILIAPEADWLAEYMA 73

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIETYGH 133
            +           WPGP+T V+   +   I    T    T   RV        L   +G 
Sbjct: 74  PLSEAVAAQMMASWPGPVTWVVPAAARAPI--WLTGGRGTIALRVTAHPVASALCRAFGG 131

Query: 134 PLAIPSANRSGQISITNVKHILSSSI--CKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
            L   SANR+G          L + +    ++  ++ G + ++   + I++ +    +R 
Sbjct: 132 ALVSTSANRAGGTPARTA---LRTRLLFGPDLDAVVPGKLGELDRPTPILDARSGMILRE 188


>gi|325121146|gb|ADY80669.1| hypothetical protein BDGL_000083 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 195

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 16/197 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A +          PT+  Y +     N  A+ R+ +I+     +       D+S
Sbjct: 13  QRLIAQAVD----------PTDAAYAIGCQIGNKNAMERIAQIRGLGPKHQYAIMCCDLS 62

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +  +A VD  +  L K   P   T +L   S      L     KT   R+P     + L
Sbjct: 63  DIATYAKVDNATYRLLKANTPAITTFILPATSEVP-RRLMHPKKKTIGLRIPSNPICQAL 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST-IVNVQCE 186
           ++  G PL   +    GQ    +  + + + + K I + IDGG   +   ST IV++  E
Sbjct: 122 LKELGEPLLTSTLILPGQEDPLDDPYDIENQLDKRIEVFIDGGFGTLT--STSIVDLSGE 179

Query: 187 KKVRILRPGGLEIETLK 203
               I+R G  ++   +
Sbjct: 180 HP-EIIRRGVGDVSAFE 195


>gi|218247419|ref|YP_002372790.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257061244|ref|YP_003139132.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8802]
 gi|218167897|gb|ACK66634.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8801]
 gi|256591410|gb|ACV02297.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 8802]
          Length = 197

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 82/200 (41%), Gaps = 16/200 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +T +  +  A      G  ++ PT+TV  LA   +N      ++  KKRP   PLI   
Sbjct: 3   KVTQTELIEAA----KMGQVVSFPTDTVPALAALPQNA---ALIFATKKRPPDKPLILMG 55

Query: 65  SDISMVKKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           + I  + ++    P  L L    A+ +WPG LTLVL   S      ++  +  T   R+P
Sbjct: 56  ASIEALWQYIQGTPEELALWQQIAESYWPGSLTLVLPASSLVPAA-MNPLDPTTIGVRIP 114

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII---DGGISKIGLE 177
                + I      LA  SANRSGQ  +  +  I ++     I   I   D      G  
Sbjct: 115 NHPIAQAILAETGCLATTSANRSGQPPLETMTAIAANFPDVRILDDINLNDKDKFGSGQP 174

Query: 178 STIVNVQCEKKVRILRPGGL 197
           ST+      K   ILR G +
Sbjct: 175 STVAKWTG-KAWEILRQGSV 193


>gi|229845648|ref|ZP_04465773.1| predicted translation factor SUA5 [Haemophilus influenzae 6P18H1]
 gi|229811448|gb|EEP47152.1| predicted translation factor SUA5 [Haemophilus influenzae 6P18H1]
          Length = 183

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--SHFLTGKFDSIAVRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  +      S I +++  + 
Sbjct: 122 ELTGFTLTSTSANLTGEPPCRIADEV-RLQFGADFP-VLDEIVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|301169373|emb|CBW28973.1| predicted ribosome maturation factor [Haemophilus influenzae 10810]
          Length = 183

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  E L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAEALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFELINDEQLSRLQGKYERPTTWIVPAKSTT--SYFLTGKFDSIAVRLCDHSSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+     +   +      + P ++D  +      S I +++  + 
Sbjct: 122 ELVGFALTSTSANLTGEP-PCRISDEVRLQFGADFP-VLDETVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|281358353|ref|ZP_06244835.1| Sua5/YciO/YrdC/YwlC family protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315180|gb|EFA99211.1| Sua5/YciO/YrdC/YwlC family protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 193

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 16/182 (8%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDP 78
             G  + +PTETVYGL   + +  A+ ++Y++K R     L   V D   + ++   ++ 
Sbjct: 24  RPGAVLLLPTETVYGLVCRADDAAAVAKIYDLKDRDRSKLLGWFVGDWRKLAEYGVELEG 83

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAI 137
           L   LA+ + PGP+T++    +             T  FRVP      ++++  G PLA 
Sbjct: 84  LPSELAEKYCPGPITIIARKKAG-----------GTLGFRVPDYPLILEILKLAGVPLAQ 132

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRILRPGG 196
            SAN SG  +  +VK  L+  +  ++ L +DGG I      ST+V+      VR+LRPG 
Sbjct: 133 TSANHSGHPNALSVKAALAE-LSGDVELAVDGGDIPPDAQGSTVVDATGN-AVRVLRPGP 190

Query: 197 LE 198
           + 
Sbjct: 191 IS 192


>gi|30909242|gb|AAP37053.1| ischemia/reperfusion inducible protein transcript variant 1 [Homo
           sapiens]
 gi|30909244|gb|AAP37054.1| ischemia/reperfusion inducible protein transcript variant 2 [Homo
           sapiens]
 gi|114325461|gb|AAH68057.1| YRDC protein [Homo sapiens]
          Length = 270

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 58  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 117

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 118 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 174

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V
Sbjct: 175 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 232

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 233 DLSVPGKFGIIRPGC 247


>gi|169600167|ref|XP_001793506.1| hypothetical protein SNOG_02913 [Phaeosphaeria nodorum SN15]
 gi|160705395|gb|EAT89644.2| hypothetical protein SNOG_02913 [Phaeosphaeria nodorum SN15]
          Length = 354

 Score =  134 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 17/126 (13%)

Query: 10  NALRKAC-EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            +L+KA  E +   +P+A PTETVYGL  D+   +A++ ++  K RPA NPLI H+  +S
Sbjct: 40  ESLKKAADELVKTDVPVAFPTETVYGLGADATRSSAVKSIFAAKGRPADNPLIVHIHSLS 99

Query: 69  MVKKHA----------------SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            ++                   S+  +   L + FWPGPLT++L   +++ + P  TA L
Sbjct: 100 QLRALLSGQLEEATGGTETGSDSIPTIYKPLIERFWPGPLTIILPTPTSSILAPEVTAGL 159

Query: 113 KTACFR 118
            T   R
Sbjct: 160 PTFGAR 165



 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 276 KEAAFNLFNYMKIADDSGASSIAFSS---IPNHGLGIAINNRLERAA 319
           +  A  LF+ ++  D      I         +  +  A+ NRL +AA
Sbjct: 304 EGVARGLFSALRELDKKSVEVIYVEGIDDKIDDDIAAAVMNRLRKAA 350



 Score = 49.3 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 215 DETSTPQSPGMLKSHYAPRSQVRL 238
            +TS P++PGM   HY+P++QV L
Sbjct: 179 GDTSKPRAPGMKYRHYSPKAQVVL 202


>gi|332248384|ref|XP_003273344.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like
           [Nomascus leucogenys]
          Length = 270

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 58  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 117

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 118 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 174

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V
Sbjct: 175 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 232

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 233 DLSVPGKFGIIRPGC 247


>gi|58761510|ref|NP_078916.3| yrdC domain-containing protein, mitochondrial precursor [Homo
           sapiens]
 gi|74750410|sp|Q86U90|YRDC_HUMAN RecName: Full=YrdC domain-containing protein, mitochondrial;
           AltName: Full=Dopamine receptor-interacting protein 3;
           AltName: Full=Ischemia/reperfusion-inducible protein
           homolog; Short=hIRIP; Flags: Precursor
 gi|30691316|gb|AAO41711.1| YRDC protein [Homo sapiens]
 gi|55666462|emb|CAH70083.1| yrdC domain containing (E. coli) [Homo sapiens]
 gi|66840171|gb|AAH80186.2| YrdC domain containing (E. coli) [Homo sapiens]
 gi|119627722|gb|EAX07317.1| yrdC domain containing (E. coli), isoform CRA_a [Homo sapiens]
          Length = 279

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 67  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 126

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 127 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 183

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V
Sbjct: 184 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 241

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 242 DLSVPGKFGIIRPGC 256


>gi|73909159|gb|AAH67857.2| YRDC protein [Homo sapiens]
          Length = 278

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 66  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 125

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 126 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 182

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V
Sbjct: 183 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 240

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 241 DLSVPGKFGIIRPGC 255


>gi|261866941|ref|YP_003254863.1| protein YrdC [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412273|gb|ACX81644.1| protein YrdC [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 183

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+   E L     +A PTE V+GL  +  + +A+  L  +K+RP    LI   + +  + 
Sbjct: 3   LQDIVEQLKRQRVVAYPTEAVFGLGCNPNSQSAVENLLVLKQRPVSKGLILIATALDFLL 62

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-L 127
                 PL+          +  P T V+    TT      T +  +   R+      K L
Sbjct: 63  PFIDERPLAELHWQRLTAQYARPTTWVVPAKKTT--PKFLTGDFDSIAVRISQHPAVKLL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G  L   SAN SGQ      + +       + P +++  +      S I ++   +
Sbjct: 121 CEQAGFALTSTSANLSGQPPCRTAQEVTR-QFGADFP-VLEMPVGDAVNPSEIRDIFTNQ 178

Query: 188 KVR 190
             R
Sbjct: 179 IFR 181


>gi|148698400|gb|EDL30347.1| yrdC domain containing (E.coli) [Mus musculus]
          Length = 263

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +  +PGP+TLV++   + +++       +    R+P   F   L
Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 167

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +G PLA+ SAN S Q S  +V+      +   + L+IDGG        +  L ST+V
Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 225

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 226 DLSVPGKFGIIRPGC 240


>gi|304399252|ref|ZP_07381118.1| SUA5/yciO/yrdC domain protein [Pantoea sp. aB]
 gi|304353178|gb|EFM17559.1| SUA5/yciO/yrdC domain protein [Pantoea sp. aB]
          Length = 190

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 8/186 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +++       L+    IA PTE V+GL  D  + +A+  L  +K+RP    LI   +D +
Sbjct: 7   ADSFENCLAHLNRQAVIAYPTEAVFGLGCDPDSESAVMALLALKQRPVEKGLILIAADYT 66

Query: 69  MVKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
            ++ + S   LS          W  P  +   +          T    +   RV      
Sbjct: 67  QLEPYISARELSVMQRERMFACW--PGPVTFVVPVPPQTPRWLTGQFDSLAIRVSDHPDV 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L   +G PL   SAN SG       + +      +  P ++ G        S I +V 
Sbjct: 125 QALCRAFGKPLVSTSANLSGLPPCRTAEEV-KQQFGEHFP-VLSGKTGGRLNPSEIRDVI 182

Query: 185 CEKKVR 190
             + +R
Sbjct: 183 SGELIR 188


>gi|55586836|ref|XP_513328.1| PREDICTED: yrdC domain-containing protein, mitochondrial [Pan
           troglodytes]
          Length = 279

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 67  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 126

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 127 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 183

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V
Sbjct: 184 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 241

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 242 DLSVPGKFGIIRPGC 256


>gi|320333780|ref|YP_004170491.1| Sua5/YciO/YrdC/YwlC family protein [Deinococcus maricopensis DSM
           21211]
 gi|319755069|gb|ADV66826.1| Sua5/YciO/YrdC/YwlC family protein [Deinococcus maricopensis DSM
           21211]
          Length = 200

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 15/208 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           MS  D  AL +A   +  G  I   TETV+ LA  ++ P A+ RL   K RP   P    
Sbjct: 1   MSAEDQVALERARVAVLDGRLIGFATETVWALACAAQ-PDAVARLAAAKGRPEGKPFQVL 59

Query: 64  VSDISMVKKHASVDPLSLHL---AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            +D +       +D             WPGPLTLV           +S         RVP
Sbjct: 60  CADPARAASFFRLDERLRARFLTLAPLWPGPLTLVAPASPLAPAALVSNGR---VGVRVP 116

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                  ++   G  LA  S N SG+++ +  +  L+ ++      ++  G    GL ST
Sbjct: 117 DHVHAHAVLNAVGGALAASSLNLSGEVAASTFEQALAYALAD----VLLPGPDAAGLAST 172

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS 207
           +V+++      +LR G +  + ++ A++
Sbjct: 173 VVDLETG---VVLREGAVRADAVREALA 197


>gi|73976934|ref|XP_539586.2| PREDICTED: similar to ischemia/reperfusion inducible protein [Canis
           familiaris]
          Length = 274

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L +G  + +PT+T+YG A  +    A+  +Y +K R    PL   +  ++
Sbjct: 60  TEALRAAVSELRSGAVVTVPTDTLYGQACAASCSAALDAVYRLKGRSHAKPLAVCLGRVA 119

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +   PGP+TLVL+   + +++            R+P   F + L
Sbjct: 120 DVYRYCRVS-VPEGLLRDLLPGPVTLVLER--SQELNRDLNPCTPLVGVRIPDHAFIQDL 176

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +G PLA+ SAN S Q S   V+      +  ++ L+IDGG    G        ST+V
Sbjct: 177 AQVFGEPLALTSANLSSQASSLTVEE--FQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVV 234

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 235 DLSVPGKFGIIRPGC 249


>gi|260913386|ref|ZP_05919867.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC
           43325]
 gi|260632617|gb|EEX50787.1| Sua5/YciO/YrdC/YwlC family protein [Pasteurella dagmatis ATCC
           43325]
          Length = 183

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L     +A PTE V+GL  +  + +A+++L  +K+RP    LI     +  + 
Sbjct: 3   IEQIVAQLKQNDVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRPIEKGLILVAPHLDFLL 62

Query: 72  KH---ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127
                A+ D       +  +  P+T V+   S+T      T    +   R       K+L
Sbjct: 63  PFIETANFDEQHWQRLQTQYDRPITWVVPAKSST--PKFLTGQFDSIAVRLCQHDAVKQL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G  L   SAN +      + + +  +   ++ P ++D  +      S I ++   +
Sbjct: 121 CEQAGFALTSTSANLTTLPPCRSAQEV-RAQFGEDFP-VLDLPVGSATNPSEIRDLFTHQ 178

Query: 188 KVR 190
             R
Sbjct: 179 LFR 181


>gi|293192668|ref|ZP_06609622.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus
           F0309]
 gi|292820175|gb|EFF79172.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces odontolyticus
           F0309]
          Length = 205

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 8/204 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + +   N     +    + L+ G  IA+PT++ Y +A  + N   +  +  I+K   
Sbjct: 1   MSYVEMHPENPQARLVNTVVDLLERGGTIALPTDSGYAIATKAGNKAGMDTIRAIRKLDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +         + + +   +D       K   PGP T +L          L+     T  
Sbjct: 61  KHNFSLLCHSFAQLGELVIIDNHEFRTMKALTPGPYTFILRGTKEVPRIMLNKKKH-TVG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P    T+ ++E  G PLA  +    G+         +   I  ++ L++ G    + 
Sbjct: 120 VRIPDHVITQAIVEALGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVG-PVGVA 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEI 199
             +T+++      V + R G  +I
Sbjct: 179 EPTTVIDFAGGDAV-VARVGAGDI 201


>gi|114325403|gb|AAH08984.3| YRDC protein [Homo sapiens]
          Length = 292

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 80  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 139

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 140 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 196

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIV 181
            + +  PLA+ SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V
Sbjct: 197 AQMFEGPLALTSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVV 254

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 255 DLSVPGKFGIIRPGC 269


>gi|297197313|ref|ZP_06914710.1| translation factor SUA5 [Streptomyces sviceus ATCC 29083]
 gi|197714895|gb|EDY58929.1| translation factor SUA5 [Streptomyces sviceus ATCC 29083]
          Length = 200

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E + +   IA PT++ Y L     +   I R+  I+     +       D +
Sbjct: 8   PRTISQIAESIRSDALIAYPTDSCYALGCRLGSRDGIDRIRTIRHLDDRHHFTLVCQDFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   VD       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 68  QLGQFVRVDKDVFRAIKASTPGSYTFILPATKEVP-RMLQHPKKKTVGVRIPDHVVTQAL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +   +  ++D G       +T+++     
Sbjct: 127 LAELGEPLLSSTLLLPDEEEPMTQGWEIKDRLDHVLDGVVDSGDCGT-EPTTVIDFSG-G 184

Query: 188 KVRILRPGGLEIETLK 203
           +  I+R G  +    +
Sbjct: 185 EAEIVRHGAGDTSRFE 200


>gi|198433752|ref|XP_002131934.1| PREDICTED: similar to ischemia/reperfusion inducible protein
           isoform 2 [Ciona intestinalis]
 gi|198433756|ref|XP_002131919.1| PREDICTED: similar to ischemia/reperfusion inducible protein
           isoform 1 [Ciona intestinalis]
          Length = 293

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 92/232 (39%), Gaps = 41/232 (17%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +      L  G  +A+PT+T+YG+A  +++  A+ +LYEIK R  + P+   V D+
Sbjct: 53  NEDVIESCVRILHRGGIVALPTDTLYGVACLAQSTEAVEKLYEIKARNPLKPVAICVGDL 112

Query: 68  SMVKKHASVDP-------------------------LSLHLAKLFWPGPLTLVLDLLSTT 102
             V +                               +   L +   PGP+T+V +   + 
Sbjct: 113 YKVCQWTRFPQGLIQSVSKTLGLEDQLDCQRPSSPGVLYGLLEDLLPGPVTIVTERSPS- 171

Query: 103 DIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161
            ++            RVP   F K L      PLA+ SAN SG+ S   ++     S+  
Sbjct: 172 -LNNTLNPKTSLVGIRVPDHKFIKDLTNRLREPLALTSANVSGEESSLRIED--FRSLWP 228

Query: 162 EIPLIIDGGISKI----------GLESTIVNVQCEK-KVRILRPGGLEIETL 202
           ++  ++D G                 ST+V +  +    +ILRPG     T+
Sbjct: 229 KLDAVVDDGEVGTRYVNKTLQYAKEGSTVVQILNDGVSFKILRPGCAYENTV 280


>gi|332304414|ref|YP_004432265.1| SUA5/yciO/yrdC domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171743|gb|AEE20997.1| SUA5/yciO/yrdC domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 187

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 72/175 (41%), Gaps = 8/175 (4%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           AG   A PTE V+GL  D  N  A+ +L  +K+R     LI    + S +  + + D + 
Sbjct: 16  AGKVFAYPTEAVFGLGCDPDNEQAVSKLLLLKERDVSKGLILVADNYSQLLPYVNDDAIK 75

Query: 81  L-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLA 136
           +    ++F  WPGP+T +L            T + +    RV      K L      PL 
Sbjct: 76  MTKRTEIFSSWPGPVTWLLPKAKNAPA--WVTGDSEFIAVRVSAHPVIKDLCSRVNKPLI 133

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             SAN +G     N   +  S    ++ LI +G +      S I++    + +R 
Sbjct: 134 STSANTAGNPPALNSDEV-KSYFSDQVVLI-EGSLGGSLSPSKILHGHSGQTIRD 186


>gi|145639411|ref|ZP_01795016.1| predicted translation factor SUA5 [Haemophilus influenzae PittII]
 gi|145271458|gb|EDK11370.1| predicted translation factor SUA5 [Haemophilus influenzae PittII]
          Length = 183

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 8/182 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +   + 
Sbjct: 4   EQIAKALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSLDFFRP 63

Query: 73  HAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
                 ++   L   +  +  P T ++   STT      T    +   R       K L 
Sbjct: 64  FVDFEKINDEQLSRLQGKYERPTTWIVPSKSTT--PHFLTGKFDSIAVRLCDHPSVKALC 121

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E  G  L   SAN +G+        +       + P ++D  +      S I +++  + 
Sbjct: 122 ELTGFALTSTSANLTGEPPCRIADEV-RLQFGVDFP-VLDEIVGDARNPSEIRDLRTNQL 179

Query: 189 VR 190
            R
Sbjct: 180 FR 181


>gi|269216191|ref|ZP_06160045.1| Sua5/YciO/YrdC/YwlC family protein [Slackia exigua ATCC 700122]
 gi|269130450|gb|EEZ61528.1| Sua5/YciO/YrdC/YwlC family protein [Slackia exigua ATCC 700122]
          Length = 220

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 6/188 (3%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP-L 79
            G  +  PT+TVYG+ V   +      +Y IK+R A   +   V  +  + ++    P  
Sbjct: 30  EGKAVVFPTDTVYGIGVSVAHARTPDLIYGIKRRDAGKAIPWLVGSMDDLMRYGRDVPSY 89

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIP 138
           +  LA  FWPG LTL++   ++  + P       T   R+P   +   +I   G P+A  
Sbjct: 90  ASALAHAFWPGALTLIV--RASAAVPPAFVGTGGTIALRMPDDEWALAVIRAVGCPMATS 147

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLE 198
           SAN            + S+ +   +   I    ++ G  STI +       RILR GG+ 
Sbjct: 148 SANIQAHTPPHLRSEV-SAEVRSGVAACIGDERARSGRSSTIADCTGA-AFRILRAGGVS 205

Query: 199 IETLKRAI 206
            E ++ A+
Sbjct: 206 EEAMRDAV 213


>gi|261365262|ref|ZP_05978145.1| protein RimN [Neisseria mucosa ATCC 25996]
 gi|288566351|gb|EFC87911.1| protein RimN [Neisseria mucosa ATCC 25996]
          Length = 189

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++ L K    L  G  +A PTE+ YG+      P A+ RL  +KKRP    +
Sbjct: 1   MLFPRILSASTLCKLQSHLKKGGLVAYPTESCYGIGCIPTLPKALNRLIHLKKRPQHKGM 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   + +  ++        ++  + +  WP P T +L   +   +  L          RV
Sbjct: 61  IVIGNQLEQLQPLLKRSSENIQTMLRNEWPAPKTFLLPAAADV-LPALRGKGRSKLAVRV 119

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           ++ G I K    S
Sbjct: 120 PAHAGARRLCQALKTPLVSTSCNRAGKRACRTEREVRRQF--GRNIWVVSGLIGKQKSPS 177

Query: 179 TIVNVQCEKKVR 190
            I++ +   ++R
Sbjct: 178 QIIDGETGVRLR 189


>gi|183602495|ref|ZP_02963860.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683538|ref|YP_002469921.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190569|ref|YP_002967963.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195975|ref|YP_002969530.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218136|gb|EDT88782.1| conserved protein in the Sua5/YciO/YrdC family [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621188|gb|ACL29345.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248961|gb|ACS45901.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250529|gb|ACS47468.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793556|gb|ADG33091.1| Sua5/YciO/YrdC family protein [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 222

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 6/218 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   D   L  A   +  G  + IPT+TVYG+A D  N  AI R+Y  K RPA   L
Sbjct: 1   MADVRSADEQTLADARRIIADGGLVVIPTDTVYGIACDPCNAAAIARIYAAKHRPADKAL 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDI--HPLSTANLKTACF 117
              + D+S++ K     P  L  LA+ F PG  + +      + +    +  +  +T   
Sbjct: 61  QVIMPDLSVLPKLGLALPTPLDALARRFLPGAFSPIAVADDDSPLLTVRVDDSGARTQGI 120

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           RVP       +     P+A  SANRSG  S   V   +++ +   + L IDGG +     
Sbjct: 121 RVPDSEVTLRVLRAIGPVAASSANRSGNESAQTVDEAVAA-LGDSVDLYIDGGPTVSHTA 179

Query: 178 STIVNVQCEKK--VRILRPGGLEIETLKRAISVELEYC 213
           ST+V    +    + ILR G LE + ++RA+  E  + 
Sbjct: 180 STVVAADPDAPDGIVILREGRLEADAVRRAVREEARHG 217


>gi|289178307|gb|ADC85553.1| SUA5 protein [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 231

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 6/218 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +   D   L  A   +  G  + IPT+TVYG+A D  N  AI R+Y  K RPA   L
Sbjct: 10  MADVRSADEQTLADARRIIADGGLVVIPTDTVYGIACDPCNAAAIARIYAAKHRPADKAL 69

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDI--HPLSTANLKTACF 117
              + D+S++ K     P  L  LA+ F PG  + +      + +    +  +  +T   
Sbjct: 70  QVIMPDLSVLPKLGLALPTPLDALARRFLPGAFSPIAVADDDSPLLTVRVDDSGARTQGI 129

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           RVP       +     P+A  SANRSG  S   V   +++ +   + L IDGG +     
Sbjct: 130 RVPDSEVTLRVLRAIGPVAASSANRSGNESAQTVDEAVAA-LGDSVDLYIDGGPTVSHTA 188

Query: 178 STIVNVQCEKK--VRILRPGGLEIETLKRAISVELEYC 213
           ST+V    +    + ILR G LE + ++RA+  E  + 
Sbjct: 189 STVVAADPDAPDGIVILREGRLEADAVRRAVREEARHG 226


>gi|123243915|emb|CAM16101.1| yrdC domain containing (E.coli) [Mus musculus]
          Length = 263

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +  +PGP+TLV++   + +++       +    R+P   F   L
Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 167

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +G PLA+ SAN S Q S  +V+      +   + L+IDGG        +  L ST+V
Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 225

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 226 DLSVPGKFGIIRPGC 240


>gi|167525667|ref|XP_001747168.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774463|gb|EDQ88092.1| predicted protein [Monosiga brevicollis MX1]
          Length = 300

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 8/189 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
                 L     +A+PT+T+YG+A  +++ TA+++LY+IK+R    P+   V  ++ V  
Sbjct: 85  DHVVPALQREAVVALPTDTIYGIAAVAQSATAVQKLYDIKERDPAKPIAICVPKVADVYT 144

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           +A V  +   +     PG +T+V        ++PL   +      RV     T+ ++   
Sbjct: 145 YAHVT-VPDDVLHQLLPGAVTVVFKRKPA--LNPLLNPDTDLIGIRVTNHSLTQAIVAGL 201

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG--LESTIVNVQCEKKV 189
             P+A+ SAN++G  S           +   +  ++DGG    G  L ST+V++   +  
Sbjct: 202 QAPIALTSANKAGAASCVQADE--FEHLWPALGCVVDGGRLGTGSRLGSTVVDLSKPQTF 259

Query: 190 RILRPGGLE 198
            +LR G  E
Sbjct: 260 ALLRDGDAE 268


>gi|319638767|ref|ZP_07993526.1| hypothetical protein HMPREF0604_01150 [Neisseria mucosa C102]
 gi|317400008|gb|EFV80670.1| hypothetical protein HMPREF0604_01150 [Neisseria mucosa C102]
          Length = 212

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 75/192 (39%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  + A R+    L  G  +A PTE+ YGL      P A+ +L  +KKRP    +
Sbjct: 24  MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCIPTLPKALNQLIHLKKRPQHKGM 83

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I     +  ++        ++  + +  WP P T +L       +  L          RV
Sbjct: 84  IVIGHSLEQLQPLLQRPSENIQTMLREAWPAPKTFLLPAGKKV-LPSLRGKRRSKLAVRV 142

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           ++ G I K    S
Sbjct: 143 PAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREVRRQF--GRKVWVVGGLIGKQKTPS 200

Query: 179 TIVNVQCEKKVR 190
            I++ +   ++R
Sbjct: 201 QIIDGETGARLR 212


>gi|296126570|ref|YP_003633822.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira murdochii DSM
           12563]
 gi|296018386|gb|ADG71623.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira murdochii DSM
           12563]
          Length = 198

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 12/198 (6%)

Query: 4   MSITDSNALRKACE----FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           +      +++ A +     ++ G  +  PT+TVYG+  D+ N  A+ R+Y+IK+R    P
Sbjct: 5   LDKNSEESIKYAADEASKVINEGGIVVSPTDTVYGMLADAFNKEAVERIYQIKEREKNKP 64

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +  + + +   K+ S   +   + K   PG LT ++ L  +   + L   N  T   RV
Sbjct: 65  FLILIKN-AEYSKYFSQMEIP-DIVKKNIPGELTFIMPLSDSLKENFLYLKN--TVALRV 120

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P     +LI     PLA PSAN SG   I +    L+     +  LII+ GI +  + ST
Sbjct: 121 PKDKYMQLILNNTKPLAAPSANPSGAGEILDGNK-LAELYEDKADLIINAGIIENKMPST 179

Query: 180 IVNVQCEKKVRILRPGGL 197
           + N       +ILR G +
Sbjct: 180 LYNCIEN---KILRQGSV 194


>gi|317050743|ref|YP_004111859.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5]
 gi|316945827|gb|ADU65303.1| Sua5/YciO/YrdC/YwlC family protein [Desulfurispirillum indicum S5]
          Length = 204

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 7/196 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L    + + A   +  PTET+YGL   + +      ++++K RP   PL    +    
Sbjct: 12  SQLLHIVKTVKAESLLCFPTETLYGLGGLATSQKVADEVFQVKGRPQGAPLPVLFAHRQQ 71

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           V+++  +      L + FWPGPLT+ L   +                 R+      K + 
Sbjct: 72  VERYLEIPAELEVLLEHFWPGPLTVALT--ARVPFPSGVLDGKGRVAARITSHRLLKTVI 129

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            Y  P+   SANRSG+    + +      +  +   II    S   + ST++    + ++
Sbjct: 130 DYAGPMIATSANRSGEAPAMSAEAC----LHLQPDAIIMDDPSTSSVPSTVIGW-DDGEL 184

Query: 190 RILRPGGLEIETLKRA 205
           R+ R G +    L+  
Sbjct: 185 RVYREGVIPEAQLRAV 200


>gi|23274116|gb|AAH23823.1| YrdC domain containing (E.coli) [Mus musculus]
          Length = 263

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 51  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 110

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +  +PGP+TLV++   + +++       +    R+P   F   L
Sbjct: 111 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 167

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +G PLA+ SAN S Q S  +V+      +   + L+IDGG        +  L ST+V
Sbjct: 168 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 225

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 226 DLSVPGKFGIIRPGC 240


>gi|32491246|ref|NP_871500.1| hypothetical protein WGLp497 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|81741613|sp|Q8D257|RIMN_WIGBR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|25166453|dbj|BAC24643.1| yrdC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 194

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 11/186 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           K    L     +A PTE+++GL  D  + +A+ +L  +KKR      I   ++IS +  +
Sbjct: 16  KIINALREEEVVAYPTESMFGLGCDPDSISAVNKLIYLKKRKINKGFIIVAANISQLNNY 75

Query: 74  ASVDPLSL-HLAKLF--WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIE 129
                LS  +L K+F  WPG +T ++      DI      N      RV   F  KK+  
Sbjct: 76  IDCTSLSKNNLNKIFCTWPGFITWLMP--PKKDIPCWLIGNNSLIAVRVSNFFPIKKICN 133

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G P+   SAN SG+I   N+K  +   +  +I +I+D  I K    S I   +     
Sbjct: 134 IFGKPIISTSANLSGEIPAKNIKE-IKHKLGSKI-IILDHPIGKYSNPSEI---RNGINY 188

Query: 190 RILRPG 195
           +I+R G
Sbjct: 189 KIIRKG 194


>gi|295696805|ref|YP_003590043.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912]
 gi|295412407|gb|ADG06899.1| Sua5/YciO/YrdC/YwlC family protein [Bacillus tusciae DSM 2912]
          Length = 221

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 8/203 (3%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            +D   + KA E L  G    +P +TVYG    +     + R+Y IK+R    P     +
Sbjct: 13  ASDEEGIAKAVEVLSVGGVAILPADTVYGFFASAVQREPVERVYRIKQREKRKPF-VIYT 71

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FT 124
           +   V+    V+  +  L +L WP  L+L+L       I    T   +T           
Sbjct: 72  NEKKVRDIVEVNETAERLIELVWPKALSLILPKRDI--IPDWFTNFQRTLAVMTAQNRII 129

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNV 183
            ++I     P+   + N SG+  +   + ++      ++ ++I D  I      ST+V+ 
Sbjct: 130 SRVIAEVDEPIFGTTCNMSGEPELKKAEEVIR--FIDQVDMMIADDNIPIYNKPSTMVDC 187

Query: 184 QCEKKVRILRPGGLEIETLKRAI 206
                 +I R   L  + LK  I
Sbjct: 188 TVA-PPKIARLSSLSYDELKEII 209


>gi|328886330|emb|CCA59569.1| Sua5 YciO YrdC YwlC family protein [Streptomyces venezuelae ATCC
           10712]
          Length = 206

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +    + +  G  +A PT++ Y L     +   I R+  I+     +       + +
Sbjct: 14  PRTIGTVADSIRNGALVAYPTDSCYALGTRLGSRDGISRIRTIRDLDDRHHFTLMCQNFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            + +   +D       K   PG  T +L          L     KT   R+P     + L
Sbjct: 74  QLGQLVHIDNDVFRAVKAATPGAYTFILPATKEVP-RQLLHPKKKTVGVRIPDHVVTQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +     +         +   +  ++  ++D G       +T+V+    +
Sbjct: 133 LADLGEPLLSSTLLLPDETEPLTQGWEIKERLDHQVDAVLDSGDCGT-EPTTVVDFSSGE 191

Query: 188 KVRILRPGG 196
              ILR G 
Sbjct: 192 P-EILRRGA 199


>gi|320093762|ref|ZP_08025611.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319979308|gb|EFW10802.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 205

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 69/189 (36%), Gaps = 4/189 (2%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    L  G  +A+PT++ Y +A    N   +  + ++++    +      S  + + 
Sbjct: 16  VDKVVGLLREGGVVALPTDSGYAIACRLGNKAGMDTIRDVRRLDDKHNFSLLCSSFAQLG 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +   +D       K   PGP T +L                 T   R+P    T+ ++  
Sbjct: 76  ELVILDNHEFRTIKALTPGPYTFILRGTKEVP-RMTLNKKKHTVGVRLPDHAITQAVVSA 134

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PL   +    G+         +  SI   + L++ G +      +T+V+        
Sbjct: 135 LGEPLLCSTLILPGETEPLTDGREVDESIGSRVDLVVVGPVGDA-EPTTVVDFTS-GTAE 192

Query: 191 ILRPGGLEI 199
           ++R G  ++
Sbjct: 193 VVRRGAGDV 201


>gi|247494089|ref|NP_705794.2| yrdC domain-containing protein, mitochondrial precursor [Mus
           musculus]
 gi|123794224|sp|Q3U5F4|YRDC_MOUSE RecName: Full=YrdC domain-containing protein, mitochondrial;
           AltName: Full=Ischemia/reperfusion-inducible protein;
           Short=mIRIP; Flags: Precursor
 gi|74146564|dbj|BAE32125.1| unnamed protein product [Mus musculus]
          Length = 280

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 12/195 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  + +  A+  +Y +K R    PL   +  ++
Sbjct: 68  TEALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVA 127

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L +  +PGP+TLV++   + +++       +    R+P   F   L
Sbjct: 128 DVYRYCQVR-VPRELLEDLFPGPVTLVMER--SEELNKDLNPFTRLVGIRIPDHAFMLDL 184

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIV 181
            + +G PLA+ SAN S Q S  +V+      +   + L+IDGG        +  L ST+V
Sbjct: 185 AQMFGGPLALTSANLSSQASSLSVEE--FQDLWPHLSLVIDGGPIGDSQSPECRLGSTVV 242

Query: 182 NVQCEKKVRILRPGG 196
           ++    K  I+RPG 
Sbjct: 243 DLSVPGKFGIIRPGC 257


>gi|28278078|gb|AAH45238.1| LOC398509 protein [Xenopus laevis]
          Length = 188

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 30  ETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWP 89
           +T+YG+A  ++N  +I  +Y +K R    PL   V ++  + ++  V+ +   L +   P
Sbjct: 1   DTIYGIACLAQNSQSISNIYNVKGRNGTKPLAICVGNVEDIYRYCRVN-VPDQLLRDLLP 59

Query: 90  GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISI 148
           GP+TLV++   +  ++            R+P   F ++L E    PLA+ SAN S Q S 
Sbjct: 60  GPVTLVMER--SDRLNKELNPFTSLVGVRIPDHAFIRQLAEVCSEPLALTSANISSQEST 117

Query: 149 TNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPGG 196
             V+      +  ++ L++DGG        +  L ST+V++    K  ++R G 
Sbjct: 118 LTVEE--FRDLWPKLSLVVDGGPIGEHSSPECRLGSTVVDLSVPGKFTVIRDGC 169


>gi|301155130|emb|CBW14594.1| predicted ribosome maturation factor [Haemophilus parainfluenzae
           T3T1]
          Length = 183

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++    L     +A PTE V+GL  +  + +A+R+L ++K+RP    LI     +  ++
Sbjct: 3   VQQIAARLMQDEVVAYPTEAVFGLGCNPLSESAVRKLLDLKQRPIEKGLILVAPSLHFLQ 62

Query: 72  KHASV---DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127
                       L   +  +  P+T V+   +  ++    T    +   R       K L
Sbjct: 63  PFVDFSRLSNEQLARLQAQYEHPITWVVP--AKAEVPHFLTGQFDSIAVRLCTHPAVKAL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            ET G  L   SAN +G     +   +  S    + P ++D  + +    S I ++   +
Sbjct: 121 CETTGFALTSTSANLTGLSPCRSADAV-RSQFGADFP-VLDEAVGQAQNPSEIRDLLTNQ 178

Query: 188 KVR 190
             R
Sbjct: 179 LFR 181


>gi|315634938|ref|ZP_07890220.1| SUA5/YciO/yrdC family domain protein [Aggregatibacter segnis ATCC
           33393]
 gi|315476490|gb|EFU67240.1| SUA5/YciO/yrdC family domain protein [Aggregatibacter segnis ATCC
           33393]
          Length = 183

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 16/187 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    L     +A PTE V+GL  +  + +A+  L  +K+RP    LI     +  + 
Sbjct: 3   LQEIVNHLKNQQVVAYPTEAVFGLGCNPNSQSAVENLLVLKQRPMSKGLILIAPSLDFLL 62

Query: 72  KHASVDPLSLHLAKLFW-------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
                      L +  W         P T V+   +TT      T +  +   R+     
Sbjct: 63  PFMDES----RLMEEHWQRLTTQYDRPTTWVVPAKTTT--PKFLTGDFNSIAVRISQHPA 116

Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            K L E  G  L   SAN +GQ      + + +     + P ++D  +      S I ++
Sbjct: 117 VKLLCEQAGFALTSTSANLTGQPPCRTAQEV-AQQFGTDFP-VLDMSVGGAVNPSEIRDI 174

Query: 184 QCEKKVR 190
              +  R
Sbjct: 175 FTNQVFR 181


>gi|52424187|ref|YP_087324.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E]
 gi|81387682|sp|Q65WC1|RIMN_MANSM RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|52306239|gb|AAU36739.1| SUA5 protein [Mannheimia succiniciproducens MBEL55E]
          Length = 183

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L +  E L     +A PTE V+GL  +  + +A+ +L  +K+RP    LI     + ++
Sbjct: 2   ELAQIVERLKKNEVVAYPTEAVFGLGCNPNSKSAVEKLLILKQRPVEKGLILVAHKLDLL 61

Query: 71  KKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
                   L      L    +  P T V+   +   +    T    +   R        +
Sbjct: 62  LPFIDESRLKQSHWQLLTQQYDCPTTWVVP--AKLSVPKFITGQFDSVAVRLCTHPAVAQ 119

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L E  G  L   SAN SG       + + S     E   ++D  +      S I ++   
Sbjct: 120 LCEQTGFALTSTSANLSGLPPCKTAQQVRSQF--GEFFPVLDMAVGNAVNPSEIRDIFSR 177

Query: 187 KKVR 190
           +  R
Sbjct: 178 QIFR 181


>gi|59802252|ref|YP_208964.1| hypothetical protein NGO1940 [Neisseria gonorrhoeae FA 1090]
 gi|194099801|ref|YP_002002936.1| hypothetical protein NGK_2311 [Neisseria gonorrhoeae NCCP11945]
 gi|240013077|ref|ZP_04719990.1| hypothetical protein NgonD_00200 [Neisseria gonorrhoeae DGI18]
 gi|240122267|ref|ZP_04735229.1| hypothetical protein NgonPI_10985 [Neisseria gonorrhoeae PID24-1]
 gi|268597971|ref|ZP_06132138.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268685513|ref|ZP_06152375.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|293398025|ref|ZP_06642231.1| translation factor [Neisseria gonorrhoeae F62]
 gi|59719147|gb|AAW90552.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193935091|gb|ACF30915.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268551759|gb|EEZ46778.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268625797|gb|EEZ58197.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291611971|gb|EFF41040.1| translation factor [Neisseria gonorrhoeae F62]
          Length = 200

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 7/193 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFR 118
           I   + +  ++    +   ++  + +  WP P T +L  L+ + + P      ++    R
Sbjct: 72  IVIGNQLEQLQPLLQMPSENIQTMLRNEWPAPKTFLL--LAKSGVLPALRGKRRSKLAVR 129

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     ++L +  G PL   S NR+G+ +    + +           I+ G I +    
Sbjct: 130 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSP 187

Query: 178 STIVNVQCEKKVR 190
           S I++ +  K++R
Sbjct: 188 SQIIDGETGKRLR 200


>gi|282857672|ref|ZP_06266885.1| SUA5 protein [Pyramidobacter piscolens W5455]
 gi|282584496|gb|EFB89851.1| SUA5 protein [Pyramidobacter piscolens W5455]
          Length = 175

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 7/180 (3%)

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           NRSG+ S TN + + +  I     +I+D G  ++G+EST+++V     V +LRPGG+ +E
Sbjct: 1   NRSGRPSPTNAQTV-AEDIGSAAAMILDAGECRVGVESTVLDVSAAVPV-LLRPGGVSME 58

Query: 201 TLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNI 260
            L+  +  E+   V      +SPG    HYAP  +VR+            RF  + +   
Sbjct: 59  ELREFLG-EVALPVGVNELKRSPGTRYRHYAPAVEVRVWEPGAAFAWPE-RFTYMGVAAS 116

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           E  + +  +   G  +  A  LF+ ++  +  G   I     P+ G+G A+ +R+ RAA 
Sbjct: 117 EK-LPARQIHFDG-FEAYAHGLFSALRELEKDGLP-IVAQWPPSGGIGRALRDRISRAAG 173


>gi|255065428|ref|ZP_05317283.1| protein RimN [Neisseria sicca ATCC 29256]
 gi|255050253|gb|EET45717.1| protein RimN [Neisseria sicca ATCC 29256]
          Length = 199

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++ LRK    L  G  +A PTE+ YG+      P A+ RL  +KKRP    +
Sbjct: 11  MLFPRILSASTLRKLQSHLKKGGLVAYPTESCYGIGCIPTLPKALNRLIHLKKRPQHKGM 70

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I   + +  ++        ++  + +  WP P T +L   +   +  L          RV
Sbjct: 71  IVIGNQLEQLQPLLKRSSENIQTMLRNEWPAPKTFLLPAAADV-LPALRGKGRSKLAVRV 129

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L       L   S NR+G+ +    + +           ++ G I K    S
Sbjct: 130 PAHAGARRLCRALKTSLVSTSCNRAGKRACKTEREVRRQF--GRDVWVVGGLIGKQKSPS 187

Query: 179 TIVNVQCEKKVR 190
            I++ +   ++R
Sbjct: 188 QIIDGETGVRLR 199


>gi|239999974|ref|ZP_04719898.1| hypothetical protein Ngon3_10911 [Neisseria gonorrhoeae 35/02]
 gi|240017646|ref|ZP_04724186.1| hypothetical protein NgonFA_10873 [Neisseria gonorrhoeae FA6140]
 gi|240114151|ref|ZP_04728641.1| hypothetical protein NgonM_11394 [Neisseria gonorrhoeae MS11]
 gi|240116791|ref|ZP_04730853.1| hypothetical protein NgonPID1_11236 [Neisseria gonorrhoeae PID18]
 gi|240122444|ref|ZP_04735400.1| hypothetical protein NgonP_00611 [Neisseria gonorrhoeae PID332]
 gi|240126706|ref|ZP_04739592.1| hypothetical protein NgonSK_10938 [Neisseria gonorrhoeae SK-92-679]
 gi|254493456|ref|ZP_05106627.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441583|ref|ZP_05795399.1| hypothetical protein NgonDG_10945 [Neisseria gonorrhoeae DGI2]
 gi|268595781|ref|ZP_06129948.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268600226|ref|ZP_06134393.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268602466|ref|ZP_06136633.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268604733|ref|ZP_06138900.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681032|ref|ZP_06147894.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268685287|ref|ZP_06152149.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291044953|ref|ZP_06570662.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226512496|gb|EEH61841.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268549170|gb|EEZ44588.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268584357|gb|EEZ49033.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268586597|gb|EEZ51273.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268588864|gb|EEZ53540.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268621316|gb|EEZ53716.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268625571|gb|EEZ57971.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291011847|gb|EFE03843.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317165270|gb|ADV08811.1| hypothetical protein NGTW08_1856 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 200

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 7/193 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 12  MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 71

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFR 118
           I   + +  ++    +   ++  + +  WP P T +L  L+ + + P      ++    R
Sbjct: 72  IVIGNQLEQLQPLLQMPFENIQTMLRNEWPAPKTFLL--LAKSGVLPALRGKRRSKLAVR 129

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     ++L +  G PL   S NR+G+ +    + +           I+ G I +    
Sbjct: 130 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSP 187

Query: 178 STIVNVQCEKKVR 190
           S I++ +  K++R
Sbjct: 188 SQIIDGETGKRLR 200


>gi|154508878|ref|ZP_02044520.1| hypothetical protein ACTODO_01389 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798512|gb|EDN80932.1| hypothetical protein ACTODO_01389 [Actinomyces odontolyticus ATCC
           17982]
          Length = 205

 Score =  132 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 8/204 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + +   N     +    + L+ G  IA+PT++ Y +A  + N   +  +  I+K   
Sbjct: 1   MSYVEMHPENPQARLVNTVVDLLERGGTIALPTDSGYAVATRAGNKAGMDTIRAIRKLDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +         + + +   +D       K   PGP T +L          L+     T  
Sbjct: 61  KHNFSLLCHSFAQLGELVIIDNHEFRTMKALTPGPYTFILRGTKEVPRIMLNKKKH-TVG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P    T+ ++E  G PLA  +    G+         +   I  ++ L++ G    + 
Sbjct: 120 VRIPDHVITQAIVEALGEPLACSTLIMPGEEEPLTDGFDVDDRIGHQVDLVVVG-PVGVA 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEI 199
             +T+++      V + R G  +I
Sbjct: 179 EPTTVIDFAGGDAV-VARVGAGDI 201


>gi|251793960|ref|YP_003008692.1| protein YrdC [Aggregatibacter aphrophilus NJ8700]
 gi|247535359|gb|ACS98605.1| protein YrdC [Aggregatibacter aphrophilus NJ8700]
          Length = 183

 Score =  132 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 16/187 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L++    L     +A PTE V+GL  +  + +A+  L  +K+RP    LI     +  + 
Sbjct: 3   LQEIVNHLKNQQVVAYPTEAVFGLGCNPNSQSAVENLLVLKQRPMSKGLILIAPGLDFLL 62

Query: 72  KHASVDPLSLHLAKLFW-------PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
                      L +  W         P T V+   +TT      T +  +   R+     
Sbjct: 63  PFIDES----RLMEAHWQRLTTQYDRPTTWVVPAKTTT--PKFLTGDFDSIAMRISQHPA 116

Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            K L E  G  L   SAN +GQ      + + +     + P ++D  +      S I ++
Sbjct: 117 VKLLCEQAGFALTSTSANLTGQPPCRTAQEV-TQQFGTDFP-VLDMPVGDAVNPSEIRDI 174

Query: 184 QCEKKVR 190
              +  R
Sbjct: 175 FTNQVFR 181


>gi|297153969|gb|ADI03681.1| hypothetical protein SBI_00560 [Streptomyces bingchenggensis BCW-1]
          Length = 206

 Score =  132 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 4/183 (2%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
             + + +G  +A PT++ + L     N   I R+  I+     +       + + + +  
Sbjct: 20  VADRIRSGALVAYPTDSCFALGCLMGNREGINRIRSIRNLDDRHHFTLVCQNFAQLGQFV 79

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
            +D       K   PG  T +L          L     KT   R+P     + L+   G 
Sbjct: 80  HIDKDVFRAIKAATPGSYTFILPATKEVP-RQLPHPKKKTVGVRIPDHVVAQALLADLGE 138

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PL   +    G+         +   +   +  ++D G       +T+++     +  I+R
Sbjct: 139 PLLSSTLLLPGEDEPMTQGWEIKDRLDHVVDAVVDSGDCGT-EPTTVIDFSS-GEAEIVR 196

Query: 194 PGG 196
            G 
Sbjct: 197 RGA 199


>gi|291612767|ref|YP_003522924.1| SUA5/yciO/yrdC domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291582879|gb|ADE10537.1| SUA5/yciO/yrdC domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 185

 Score =  132 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 6/180 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R+   +L  G  IA PTE+ YGL  D  N  A+ RL ++K+RP    LI   S    V +
Sbjct: 9   RQLAAYLKRGGLIAYPTESCYGLGCDPANRAAVLRLLKLKRRPQRKGLILIASHYRQVAR 68

Query: 73  HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
           +   + P      +      +T ++ + S+            T   R+    F ++L  +
Sbjct: 69  YLQPLAPADQARLQHEGAQAVTYLMPVRSSA--PRWLRGTHDTLAVRLTAHPFARQLCRS 126

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
               L   SANRSGQ             +      ++ G + K    STI      K +R
Sbjct: 127 ADSALVSTSANRSGQRPAKTYADC--RRLFGNKVWVLRGRVGKRKQPSTIRAWSDGKIIR 184


>gi|293390830|ref|ZP_06635164.1| protein YrdC [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951364|gb|EFE01483.1| protein YrdC [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 183

 Score =  132 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L+   E L     +A PTE V+GL  +  + +A+  L  +K+RP    LI     +  + 
Sbjct: 3   LQDIVEQLKRQHVVAYPTEAVFGLGCNPNSQSAMENLLVLKQRPVSKGLILIAPALDFLL 62

Query: 72  KHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-L 127
                 PL+          +  P T V+    TT      T +  +   R+      K L
Sbjct: 63  PFIDERPLAELHWQRLTAQYARPTTWVVPAKKTT--PKFLTGDFDSIAVRISQHPAVKLL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G  L   SAN SGQ      + +       + P +++  +      S I ++   +
Sbjct: 121 CEQAGFALTSTSANLSGQPPCRTAQEVTR-QFGADFP-VLEMPVGDAVNPSEIRDIFTNQ 178

Query: 188 KVR 190
             R
Sbjct: 179 IFR 181


>gi|240081874|ref|ZP_04726417.1| hypothetical protein NgonF_11291 [Neisseria gonorrhoeae FA19]
 gi|240127157|ref|ZP_04739818.1| hypothetical protein NgonS_00622 [Neisseria gonorrhoeae SK-93-1035]
 gi|212288270|sp|Q5F5I5|RIMN_NEIG1 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
          Length = 189

 Score =  132 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 7/193 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 1   MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFR 118
           I   + +  ++    +   ++  + +  WP P T +L  L+ + + P      ++    R
Sbjct: 61  IVIGNQLEQLQPLLQMPSENIQTMLRNEWPAPKTFLL--LAKSGVLPALRGKRRSKLAVR 118

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     ++L +  G PL   S NR+G+ +    + +           I+ G I +    
Sbjct: 119 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSP 176

Query: 178 STIVNVQCEKKVR 190
           S I++ +  K++R
Sbjct: 177 SQIIDGETGKRLR 189


>gi|240119018|ref|ZP_04733080.1| hypothetical protein NgonPID_11272 [Neisseria gonorrhoeae PID1]
          Length = 189

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 7/193 (3%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  ++A RK   +L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 1   MLFSRIIAASAQRKLSVYLKKGGLVAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGM 60

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT-ACFR 118
           I   + +  ++    +   ++  + +  WP P T +L  L+ + + P      ++    R
Sbjct: 61  IVIGNQLEQLQPLLQMPFENIQTMLRNEWPAPKTFLL--LAKSGVLPALRGKRRSKLAVR 118

Query: 119 VPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     ++L +  G PL   S NR+G+ +    + +           I+ G I +    
Sbjct: 119 VPDHTGARRLCQALGMPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSP 176

Query: 178 STIVNVQCEKKVR 190
           S I++ +  K++R
Sbjct: 177 SQIIDGETGKRLR 189


>gi|241760643|ref|ZP_04758735.1| translation factor SUA5 [Neisseria flavescens SK114]
 gi|241318824|gb|EER55350.1| translation factor SUA5 [Neisseria flavescens SK114]
          Length = 212

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  + A R+    L  G  IA PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 24  MMFPRILSAAAQRRLQAHLKKGGLIAYPTESCYGLGCVPTLSKALNQLIHLKKRPQHKGM 83

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I     +  ++        ++  +    WP P T +L       +  L          RV
Sbjct: 84  IVIGHSLEQLQPLLQRPSENIQTMLHEAWPAPKTFLLPASKKV-LPSLRGKGRSKLAVRV 142

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           ++ G I K    S
Sbjct: 143 PAHAGARRLCQVLETPLVSTSCNRAGKRACKTEREVRRQF--GRKVWVVGGLIGKQKTPS 200

Query: 179 TIVNVQCEKKVR 190
            I++ +   ++R
Sbjct: 201 QIIDGETGARLR 212


>gi|115451395|ref|NP_001049298.1| Os03g0201600 [Oryza sativa Japonica Group]
 gi|113547769|dbj|BAF11212.1| Os03g0201600 [Oryza sativa Japonica Group]
          Length = 183

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 4/163 (2%)

Query: 41  NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS 100
           +  A+ R+YEIK R    PL   V+D+  + + A VD L   L     PGP+T+VL   +
Sbjct: 10  SAEAVNRIYEIKGRVQTRPLAICVADVPDISRFAVVDHLPHGLLDSLLPGPVTVVLKRGN 69

Query: 101 TTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
            + +       L++   RVP   F + +    G  LA+ SAN SG  S  NVK      +
Sbjct: 70  NSILERSLNPGLESIGVRVPDFDFIRAISRGAGSALALTSANLSGHPSSVNVKD--FEDL 127

Query: 160 CKEIPLIIDGGISKIGLE-STIVNVQCEKKVRILRPGGLEIET 201
                 + DGGI   G   STIV++      +ILR G    ET
Sbjct: 128 WPHCSYVFDGGILPSGRAGSTIVDLITPGVYKILRDGSSRQET 170


>gi|281349712|gb|EFB25296.1| hypothetical protein PANDA_013165 [Ailuropoda melanoleuca]
          Length = 187

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 12/173 (6%)

Query: 31  TVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPG 90
           T+YGLA  +    A+  +Y +K R    PL   +  ++ V ++  V  +   L K   PG
Sbjct: 1   TLYGLACSASCSEALGAVYRLKGRSEAKPLAVCLGRVADVYRYCHVR-VPEGLLKDLLPG 59

Query: 91  PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISIT 149
           P+TLVL+   + +++            R+P   F + L++ +G PLA+ SAN S Q S  
Sbjct: 60  PVTLVLER--SEELNKDLNPFTPLVGIRIPDHAFIQDLVQVFGGPLALTSANLSSQASSL 117

Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLE------STIVNVQCEKKVRILRPGG 196
           NV+      +  ++ L+IDGG    G        ST+V++    K  I+RPG 
Sbjct: 118 NVEE--FQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGKFGIIRPGC 168


>gi|148241524|ref|YP_001226681.1| translation factor [Synechococcus sp. RCC307]
 gi|147849834|emb|CAK27328.1| Possible translation factor [Synechococcus sp. RCC307]
          Length = 195

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 8/196 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +   +   + L  G P   PT+T+  LA     P+A + ++++K+RPA  PLI   + + 
Sbjct: 3   AEGFQVLAQRLQQGEPALFPTDTLPALAAI---PSAAQAIWQLKQRPADKPLILMGASVE 59

Query: 69  MVKK-HASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
            +        P     LA+L WPG LTLVL       +  L+     +   RVP      
Sbjct: 60  QLLPCLGQEPPAGWQRLAELGWPGALTLVLPACGPV-VEALNPEGGCSLGLRVPACEAAL 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            +     PLA  SANRSG+ +       L+    + I L  +  +   G  ST+V+ Q +
Sbjct: 119 QLLRCSGPLATSSANRSGEPACRTAAE-LAHCFPEVIRLAPEPWLPGSGQASTVVSWQSD 177

Query: 187 KKVRILRPGGLEIETL 202
              R+LR G + +  +
Sbjct: 178 G-WRVLRQGQVVVPEI 192


>gi|258404937|ref|YP_003197679.1| SUA5/yciO/yrdC domain-containing protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257797164|gb|ACV68101.1| SUA5/yciO/yrdC domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 219

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 4/195 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
             A   +  G  +  PTET++ +  D+ NP    ++  IK RP   PL   +    M+  
Sbjct: 21  ETAVTAVRQGGVLIYPTETLFAVGGDALNPAVGEQVQAIKARPEGKPLPVLLGAPEMLAM 80

Query: 73  H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
             A        L   FWPGPL+L++             A   T            L    
Sbjct: 81  VTAWQSRDLQRLTNAFWPGPLSLLVPARPGLPAAIQDHAGW-TCVRWTSHRDASWLSRQC 139

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLESTIVNVQCEKKVR 190
           G PL   SANRSG      V   L   + + +  +  G  S   GL ST+V +     + 
Sbjct: 140 GQPLIATSANRSGAP-PAAVAEQLDPEMIRSVNGVWLGHSSPDGGLPSTLVRILSGGVLE 198

Query: 191 ILRPGGLEIETLKRA 205
           +LR G ++   L+ A
Sbjct: 199 VLRQGAVDSRALEGA 213


>gi|269956584|ref|YP_003326373.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269305265|gb|ACZ30815.1| Sua5/YciO/YrdC/YwlC family protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 206

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 4/189 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + +    L  G  IA PT++ Y L           R+ ++++    +      +D +
Sbjct: 14  ARVIGQVTTMLRDGALIAYPTDSGYALGSRMDYHDGTERIRQVRRLNDKHHFTLVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +     +D  +    K   PGP T +L  L       L+    KT   R+      + L
Sbjct: 74  QLGHLVHLDNSAFRAIKAATPGPYTFILRALPEVP-RRLAHPKKKTVGVRITDNRVAQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +    GQ +       +   +   +  ++DGG       +T+V+   E 
Sbjct: 133 LHELGEPLLSSTLILPGQTAPLVDGWTIKEELDHVLDAVVDGGEVPE-RPTTVVDW-SEG 190

Query: 188 KVRILRPGG 196
              +LR G 
Sbjct: 191 YPEVLRAGA 199


>gi|261749259|ref|YP_003256944.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497351|gb|ACX83801.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 192

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + K+ + L  G  +  PT+TV+GL  D+ N  A+ ++Y+IK R     +I  V  +  
Sbjct: 5   EEIEKSVKILKKGKSLLYPTDTVWGLGCDAFNIKAVEKIYKIKNRSFSKTMILLVESMDR 64

Query: 70  VKKHASVDPLSLH--LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
           + +     P  +   L +     P+T+V D            A   T   R+    F   
Sbjct: 65  LYELVEEIPFFVKKILLENHRKKPITIVYDNPRKIVSKLNPQAKDNTLAIRLTMDPFCSL 124

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           LI+    P+   SAN SG  +  +    +S SI K+I   +
Sbjct: 125 LIQNLDRPIISTSANLSGFPTPKSFCE-ISPSILKKIDYAV 164


>gi|50083490|ref|YP_045000.1| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp.
           ADP1]
 gi|81393947|sp|Q6FFH9|RIMN_ACIAD RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|49529466|emb|CAG67178.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN)
           [Acinetobacter sp. ADP1]
          Length = 192

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 11/191 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A   L  G  +A PTE V+GL  D  N  A R++  +K+RP    +I    D+ 
Sbjct: 5   TTSVAEAAHCLKQGQVLAYPTEAVWGLGCDPFNELAFRQILALKQRPIEKGVILLAGDVG 64

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            ++   A +D          W         +T +L  +S+  +    T        RV  
Sbjct: 65  QIEYLLADLDETIRAQVIESWTTRSVDERAITWLLP-VSSDQVPTWITGQHHQVAVRVTN 123

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN +G     +++    S+   +    ++G +      S I
Sbjct: 124 HPLCVALCHAFNGFIVSTSANPAGLEPARSLQEA--SAYFGQGLNYLNGDLGLSQQPSRI 181

Query: 181 VNVQCEKKVRI 191
           ++    + +R 
Sbjct: 182 IDATTGRVIRD 192


>gi|284799516|ref|ZP_05984195.2| protein RimN [Neisseria subflava NJ9703]
 gi|284798106|gb|EFC53453.1| protein RimN [Neisseria subflava NJ9703]
          Length = 191

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  + A R+    L  G  +A PTE+ YGL      P A+ +L  +KKRP    +
Sbjct: 3   MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCVPTLPKALNQLIHLKKRPQHKGM 62

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I     +  ++        ++  +    WP P T +L       +  L          RV
Sbjct: 63  IVIGHSLEQLQPLLQRPSENIQTMLHEAWPAPKTFLLPAGKKV-LPSLRGKRRSKLAVRV 121

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           ++ G I K    S
Sbjct: 122 PAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREVRRQF--GRKVWVVGGLIGKQKTPS 179

Query: 179 TIVNVQCEKKVR 190
            I++ +   ++R
Sbjct: 180 QIIDGETGARLR 191


>gi|320538321|ref|ZP_08038202.1| Sua5/YciO/YrdC/YwlC family protein [Treponema phagedenis F0421]
 gi|320144820|gb|EFW36555.1| Sua5/YciO/YrdC/YwlC family protein [Treponema phagedenis F0421]
          Length = 181

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 19/196 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+S  D N+     E L     + IPT+T+YG +     P    ++  IK R A    I 
Sbjct: 2   IVSKIDGNSADITAELLREKKIVIIPTDTIYGFSGIM--PETADKIAAIKGRNASKQFIA 59

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            ++     KK+  +      L    WPGPLTL++ L            N  T  FR P  
Sbjct: 60  LIAKPEDYKKYTDISIPQKFL--SLWPGPLTLIMRLK-----------NGNTQAFRCPND 106

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            + ++++E  G P+   SANRSG   +T+++  +     +++ LI+D G    GL STIV
Sbjct: 107 NWLREVVEKTGKPIYSTSANRSGFPPLTDIEE-IKQEFQQDVSLIVDAGK-ITGLASTIV 164

Query: 182 NVQCEKKVRILRPGGL 197
           ++   +  ++LR G +
Sbjct: 165 DISGSEP-KLLRQGAI 179


>gi|291287679|ref|YP_003504495.1| SUA5/yciO/yrdC domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884839|gb|ADD68539.1| SUA5/yciO/yrdC domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 201

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 8/188 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I     +NA+      L    P+   T+T+YG+     +  +  ++++IK R    P 
Sbjct: 1   MLIAKAEGNNAIEIFRRALTKSEPVIFSTDTIYGIGAPVSDVKSNEKIFDIKGRDRTKPF 60

Query: 61  ICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
              +S +  + + A +     L   +  WP P+T +L   +   ++PL T N  T   R+
Sbjct: 61  PILISSLKQLSEIAIIESEKQLKALEEVWPAPVTFIL--KAKKGLNPLFTIN-GTVAVRM 117

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-S 178
           P       +     P++  SAN SG+    + K ++ +   K I  I D       +E S
Sbjct: 118 PDKKWLLNLIDTVGPVSATSANLSGENYSNSEKAVIETFKSKIIFFIFDNNQ---NVESS 174

Query: 179 TIVNVQCE 186
           +I+++  +
Sbjct: 175 SIIDISQD 182


>gi|329894846|ref|ZP_08270646.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC3088]
 gi|328922740|gb|EGG30074.1| Sua5 YciO YrdC YwlC family protein [gamma proteobacterium IMCC3088]
          Length = 173

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 5/176 (2%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  IA PTE V+GL  D  N  A+ RL  +K+RP    LI  +++  +        
Sbjct: 1   MLARGGVIAYPTEGVWGLGCDPLNKRAVERLLALKERPWQKGLIVALANEGVADTLLRTL 60

Query: 78  PLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPL 135
           P       K  WPGP T ++            T        R+      + L    G  +
Sbjct: 61  PQDRKNAIKATWPGPNTWLVPH--DDLWPSWVTGESDFIACRLSAYAVVRDLARAAGGAI 118

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
              SAN +GQ+     + +      + +  I+ G +  +   S I +    + +R 
Sbjct: 119 ISTSANPAGQVPAMTAQAV-RQYFGRSVDFIMPGRVQGLQKPSVIRHGLTGETLRE 173


>gi|326796760|ref|YP_004314580.1| ribosome maturation factor rimN [Marinomonas mediterranea MMB-1]
 gi|326547524|gb|ADZ92744.1| ribosome maturation factor rimN [Marinomonas mediterranea MMB-1]
          Length = 185

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 5/185 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++ +  + +  G  +A PTE V+GL  D  N  A+RR+  +K RP    LI    D  
Sbjct: 4   TSSIAEITDIIRQGGVVAYPTEAVWGLGCDPYNELAVRRILALKSRPEEKGLILITGDKQ 63

Query: 69  MVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKK 126
            + K    ++  S          P + V+    T           ++   R+        
Sbjct: 64  QLLKWQPHLNAESFERLVSAPTHPTSWVVP--DTEVTPTWVRGKHQSVAIRLSQHQPVVD 121

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L       +   SAN +G+    N+   L     + +  I D  +      S + ++   
Sbjct: 122 LCNRLEQAIVSTSANPAGEEPAMNIDE-LKGYFGETLDGIYDAPLGGATSPSQVKDILTG 180

Query: 187 KKVRI 191
           K  R+
Sbjct: 181 KVFRV 185


>gi|209525410|ref|ZP_03273950.1| SUA5/yciO/yrdC domain [Arthrospira maxima CS-328]
 gi|209494090|gb|EDZ94405.1| SUA5/yciO/yrdC domain [Arthrospira maxima CS-328]
          Length = 203

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 20/202 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            ++    ++ A   +     I  PT+TV  LA       A   +++ K+RP   PLI   
Sbjct: 3   KVSQEELIKAAIAGV---AVITFPTDTVPALAARPDKAEA---IFQTKQRPPDKPLILMG 56

Query: 65  SDISMVKKHASVDPLSLHL------AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           +    + +   VD L+  L      A+ +WPG LTLVL   S      ++  +  T   R
Sbjct: 57  ATAESLWQF--VDSLAWELECWQQIARQYWPGALTLVLPASSAVP-PAVNPTDPTTIGLR 113

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SKIGL 176
           VP C    ++++  G PLA  SAN SGQ  +     I       E+  + D    S   +
Sbjct: 114 VPKCEIALEILKRTG-PLATTSANLSGQPPLLTTADIDRQF--PEVLTLKDAPPESGSAI 170

Query: 177 ESTIVNVQCEKKVRILRPGGLE 198
            ST+V         ILR GG+E
Sbjct: 171 PSTVVRWTKNGDWEILRRGGVE 192


>gi|317131938|ref|YP_004091252.1| SUA5/yciO/yrdC domain [Ethanoligenens harbinense YUAN-3]
 gi|315469917|gb|ADU26521.1| SUA5/yciO/yrdC domain [Ethanoligenens harbinense YUAN-3]
          Length = 216

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 10/215 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I++  ++  + +  E +  G PI IPT+T Y LA  + +  AI ++++ KKRP    L
Sbjct: 1   MNIVTNINT-CIDEILEHMQKGNPIIIPTDTNYNLACLANSAEAIDKIFKYKKRPKNKAL 59

Query: 61  ICHVSDISMVKKHASVDP--LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF- 117
                D S   K+   D   +   LA+ FWPGPL ++++  ++   + L+  N  T    
Sbjct: 60  SLFFLDPSDWNKYGICDNERIIERLAETFWPGPLNIIINKRNSDYDYMLN--NKSTIALG 117

Query: 118 RVPCGFTKKLIETY-GHPLAIPSANRSGQISITNV-KHILSSSICKEIPLIID-GGISKI 174
            V     ++ +    G P+AI SAN SG +  T V K I  S +   +   I+       
Sbjct: 118 SVSNPTWREFMSHLNGEPIAITSANISGTVDNTLVTKEIAISQMKNCVDFFIESSNAIST 177

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVE 209
              STIV+V  +  V+++R G ++ + L  A+ VE
Sbjct: 178 SKSSTIVSVI-DNTVKLIREGDIDKKALDNALHVE 211


>gi|257126756|ref|YP_003164870.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia buccalis C-1013-b]
 gi|257050695|gb|ACV39879.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia buccalis C-1013-b]
          Length = 219

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 17/213 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            + ++ A   L  G     PT+TVYG+    +    + ++Y+IKKR     +I  +S+  
Sbjct: 11  KSEIQNAVIALKNGGVAVFPTDTVYGIGTLPK-KEFVEKIYKIKKRDFSKKIIALISNQK 69

Query: 69  MVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           ++    +    ++     +   +WPG LT++    +  +       ++ T   R+P    
Sbjct: 70  ILSSLINETSENMDKISNILNKYWPGELTVIF--RANQNFTKKFDKDMHTIGIRIPKNEI 127

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--------IG 175
             ++IE  G  +   SAN SG+ S+T  +++  + +      I D  I           G
Sbjct: 128 ALEIIENSGGVVLTTSANISGENSVTKFENLNENLLKNVDVAISDESIENFEKINNKLTG 187

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISV 208
             STI+  +   K+ +LR G +  E + +   +
Sbjct: 188 KPSTIIKYE-NGKLILLREGNISFEEILKEFQI 219


>gi|302556903|ref|ZP_07309245.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus
           Tu4000]
 gi|302474521|gb|EFL37614.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces griseoflavus
           Tu4000]
          Length = 200

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E + +   IA PT++ Y L     + + I R+  I+K    +       D +
Sbjct: 8   PRTISQVAESIRSDSLIAYPTDSCYALGCRLGSRSGIDRIRTIRKLDDRHHFTLMCRDFA 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D       K   PG  T +L          L     KT   R+P    T+ L
Sbjct: 68  QLGQFVRIDNDVFRAVKASTPGSYTFILPATKEVP-RMLMHPKKKTVGVRIPDHVVTQAL 126

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+         +   +  ++  ++D G       +T+++     
Sbjct: 127 LEELGEPLLSSTLLLPGEDEPMTQGWEIKDRLDHQVDAVLDSGDCGT-EPTTVIDFSG-G 184

Query: 188 KVRILRPGGLEI 199
           +  I+R G  ++
Sbjct: 185 EAEIVRRGAGDV 196


>gi|326335829|ref|ZP_08202008.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691973|gb|EGD33933.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 186

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 13/189 (6%)

Query: 12  LRKACEF----LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +++  +     L     I  PT+T++GL  D+ +   I R+ +IK+R      I  VS +
Sbjct: 3   IKEIVKLTLPFLQENKVILYPTDTIWGLGCDAYSYQGIERIRQIKRRDINKNFILLVSSL 62

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
            M+K++  +    +   K     P +++   +  + +     A   +  FR V   F ++
Sbjct: 63  GMLKQYVKIPSEIVFFLKSQT-RPTSVIYQEVCNSYLPL---AKDNSLAFRIVQDEFCRE 118

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQ 184
           LI+ +G P+   SAN +G+ S       +S  I   +  I+       +    S +V ++
Sbjct: 119 LIKAFGKPIISTSANITGEPSPMTFSQ-ISEEIKNLVDYIVPYHQQNQEGKTPSQLVKIE 177

Query: 185 CEKKVRILR 193
            E ++  LR
Sbjct: 178 -EGEIIFLR 185


>gi|260554284|ref|ZP_05826534.1| yrdC [Acinetobacter sp. RUH2624]
 gi|260404593|gb|EEW98113.1| yrdC [Acinetobacter sp. RUH2624]
          Length = 189

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E L  G  +A PTE V+GL  D  N  A +++ ++K+RP    +I   S IS
Sbjct: 3   TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILKLKQRPIEKGVILLASHIS 62

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+    S+   +       W          T +L   +   I             RV  
Sbjct: 63  QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--ADQHIPSWIKGEHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN SGQ    +++              ++G + +    S I
Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + +R 
Sbjct: 179 INALTGEVIRP 189


>gi|22330801|ref|NP_566156.2| yrdC family protein [Arabidopsis thaliana]
 gi|6091731|gb|AAF03443.1|AC010797_19 hypothetical protein [Arabidopsis thaliana]
 gi|19310491|gb|AAL84979.1| At3g1920/F28J7.25 [Arabidopsis thaliana]
 gi|23505865|gb|AAN28792.1| At3g1920/F28J7.25 [Arabidopsis thaliana]
 gi|332640214|gb|AEE73735.1| putative translation factor [Arabidopsis thaliana]
          Length = 307

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 19/209 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  L+   + L  G    IPT+TVY +A D +N +A+ RL  IKK  +  PL      +
Sbjct: 79  DSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRRIKKIESSKPLSILCRSL 138

Query: 68  SMVKKHASVDPL--------SLHLAKLFWPGPLTLVLDLLSTTDIH-------PLSTANL 112
             +       P              K   PGP T +L                 +  A+ 
Sbjct: 139 RDIDTFTMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASR 198

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGG 170
           K    R+      + +++    PL   S     +         +      E +  ++DGG
Sbjct: 199 KNVGVRISDDALCQAILQQMDAPLICTSVKGPKENEWMIDPTAIGDIYGPEGLDFVVDGG 258

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           I ++   STIV++      +++R G   I
Sbjct: 259 I-RVAEPSTIVDMTGPYP-KVIREGKGPI 285


>gi|330881838|gb|EGH15987.1| SUA5/yciO/yrdC domain-containing protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 254

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 4/173 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK-KHASVDPLSLHL 83
           IA PTE V+GL  D  +  A+ RL  IK RP    LI    +I            L L  
Sbjct: 2   IAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIADNIRQFDFLFEDFPQLWLDR 61

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
               WPGP T ++       +    T   +T   RV    T + +     PL   SAN +
Sbjct: 62  MASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSANPA 119

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           G+ +  +   +       +I  ++ G +      S I ++   +   +   GG
Sbjct: 120 GRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIATGQVCALADAGG 171


>gi|308447376|ref|XP_003087416.1| hypothetical protein CRE_14455 [Caenorhabditis remanei]
 gi|308256659|gb|EFP00612.1| hypothetical protein CRE_14455 [Caenorhabditis remanei]
          Length = 561

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A + L  G  +A PTE V+GL  D  N  A   +  +K+RP    +I     +S
Sbjct: 375 TTSVAEAAQILQQGKVLAYPTEAVWGLGCDPFNEQAFLEILRLKQRPIEKGVILLAGQLS 434

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V+     +DP+        W          T +L   +   I             RV  
Sbjct: 435 QVEHLLTEIDPIIREQIIQSWTQRSRAERATTWLLP--ADDKIPQWIKGQHAQVAVRVTN 492

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN +G     +++    S         ++G +      S I
Sbjct: 493 HPLCIALCNAFNGFIVSTSANSAGLEPARSLQQA--SQYFGSELNYLNGDLGLSREPSKI 550

Query: 181 VNVQCEKKVRI 191
           ++    + +R 
Sbjct: 551 IDASTAQVIRA 561


>gi|169632175|ref|YP_001705911.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN)
           [Acinetobacter baumannii SDF]
 gi|169797636|ref|YP_001715429.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN)
           [Acinetobacter baumannii AYE]
 gi|184156507|ref|YP_001844846.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU]
 gi|213155570|ref|YP_002317615.1| protein YrdC [Acinetobacter baumannii AB0057]
 gi|215484990|ref|YP_002327231.1| Protein yrdC [Acinetobacter baumannii AB307-0294]
 gi|260557579|ref|ZP_05829793.1| yrdC [Acinetobacter baumannii ATCC 19606]
 gi|301346865|ref|ZP_07227606.1| Protein yrdC [Acinetobacter baumannii AB056]
 gi|301512293|ref|ZP_07237530.1| Protein yrdC [Acinetobacter baumannii AB058]
 gi|301594507|ref|ZP_07239515.1| Protein yrdC [Acinetobacter baumannii AB059]
 gi|332852662|ref|ZP_08434316.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013150]
 gi|332869378|ref|ZP_08438756.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013113]
 gi|332875641|ref|ZP_08443453.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6014059]
 gi|212277661|sp|B2I111|RIMN_ACIBC RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277662|sp|B0VNL3|RIMN_ACIBS RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277670|sp|B0VCB7|RIMN_ACIBY RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277730|sp|A3M154|RIMN_ACIBT RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|169150563|emb|CAM88472.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN)
           [Acinetobacter baumannii AYE]
 gi|169150967|emb|CAO99583.1| putative ribosome maturation factor (dsRNA-binding protein) (RimN)
           [Acinetobacter baumannii]
 gi|183208101|gb|ACC55499.1| putative translation factor (SUA5) [Acinetobacter baumannii ACICU]
 gi|193076053|gb|ABO10648.2| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter
           baumannii ATCC 17978]
 gi|213054730|gb|ACJ39632.1| protein YrdC [Acinetobacter baumannii AB0057]
 gi|213988323|gb|ACJ58622.1| Protein yrdC [Acinetobacter baumannii AB307-0294]
 gi|260408752|gb|EEX02056.1| yrdC [Acinetobacter baumannii ATCC 19606]
 gi|322506375|gb|ADX01829.1| Putative ribosome maturation factor [Acinetobacter baumannii
           1656-2]
 gi|323516243|gb|ADX90624.1| putative translation factor (SUA5) [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729130|gb|EGJ60477.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013150]
 gi|332732796|gb|EGJ64012.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6013113]
 gi|332736214|gb|EGJ67229.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter baumannii
           6014059]
          Length = 189

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3   TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+    S+   +       W          T +L   +   I             RV  
Sbjct: 63  QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--ADQHIPSWIKGEHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN SGQ    +++              ++G + +    S I
Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + +R 
Sbjct: 179 INALTGEVIRP 189


>gi|81300673|ref|YP_400881.1| hypothetical protein Synpcc7942_1864 [Synechococcus elongatus PCC
           7942]
 gi|81169554|gb|ABB57894.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 195

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 11/197 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L        AG  I+ PT+T+  LAV         ++Y +K+RP+  PLI   +  + +
Sbjct: 5   SLAAVITAAQAGQVISFPTDTLPALAVQPDQA---AQIYRLKQRPSEKPLILMAATAAEL 61

Query: 71  KKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
              A   P        +A  +WPG LTLVL          ++  +  +   R+P C   +
Sbjct: 62  WPFAQGSPEDQAQWNAIANQYWPGALTLVLPASDRLPAA-VNPLDRSSIGLRIPACALAR 120

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +++   G PLA  SANRSG+         +++   +   L  D      GL ST+V  Q 
Sbjct: 121 QILAETG-PLATTSANRSGEP-ALLDPDAIAAEFPEVTVLAEDPWPDPSGLASTVVRWQA 178

Query: 186 EKKVRILRPGGLEIETL 202
           + + ++LR G + +  +
Sbjct: 179 DGQWQVLRQGSIVLGEV 195


>gi|119475272|ref|ZP_01615625.1| Sua5/YciO/YrdC family protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451475|gb|EAW32708.1| Sua5/YciO/YrdC family protein [marine gamma proteobacterium
           HTCC2143]
          Length = 184

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 5/181 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A   L  G  IA PTE+V+G   D  N  A+ +L  +K+RP    LI   +      +
Sbjct: 6   QRAARQLLVGNIIAYPTESVWGFGCDPDNQEAVAKLLSLKQRPVSKGLILVAASAEQFSR 65

Query: 73  HAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
           +   + P      +     P T ++   +        T +  +   RV        L   
Sbjct: 66  YLEGLSPSLQEKFRRPTAVPTTWLVP--ANKHAMSWITGDYDSIALRVSTYKPVVDLCVA 123

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G PL   SAN +G+ + +     +   +   +  I+ G        S I ++  +K +R
Sbjct: 124 FGTPLVSTSANTAGK-APSQWPWQMHRYLGGGLDYILPGSTGGNVKPSEIRDLLSDKVIR 182

Query: 191 I 191
            
Sbjct: 183 S 183


>gi|225077323|ref|ZP_03720522.1| hypothetical protein NEIFLAOT_02382 [Neisseria flavescens
           NRL30031/H210]
 gi|224951315|gb|EEG32524.1| hypothetical protein NEIFLAOT_02382 [Neisseria flavescens
           NRL30031/H210]
          Length = 190

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 5/192 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M    I  + A R+    L  G  +A PTE+ YGL        A+ +L  +KKRP    +
Sbjct: 2   MMFPRILSAAAQRRLQAHLKKGGLVAYPTESCYGLGCVPTLSKALNQLIHLKKRPQHKGM 61

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           I     +  ++        ++  +    WP P T +L       +  L          RV
Sbjct: 62  IVIGHSLEQLQPLLQRPSENIQTMLHEAWPAPKTFLLSAGKKV-LPSLRGKGRSKLAVRV 120

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     ++L +    PL   S NR+G+ +    + +           ++ G I K    S
Sbjct: 121 PAHAGARRLCQVLEMPLVSTSCNRAGKRACKTEREVRRQF--GRKVWVVGGLIGKQKTPS 178

Query: 179 TIVNVQCEKKVR 190
            I++ +   ++R
Sbjct: 179 QIIDGETGVRLR 190


>gi|299771934|ref|YP_003733960.1| Protein yrdC [Acinetobacter sp. DR1]
 gi|298702022|gb|ADI92587.1| Protein yrdC [Acinetobacter sp. DR1]
          Length = 189

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3   TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+    S+   +       W          T +L   +   I             RV  
Sbjct: 63  QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--AGEHIPSWIKGEHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN SGQ    +++              ++G + +    S I
Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + +R 
Sbjct: 179 INALTGEIIRA 189


>gi|307151374|ref|YP_003886758.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981602|gb|ADN13483.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7822]
          Length = 193

 Score =  130 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 14/194 (7%)

Query: 16  CEFL---DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            E +    AG  ++ PT+TV  LA           ++  K+RP   PLI   + +  +  
Sbjct: 7   AELIAGTKAGKVVSFPTDTVPALAALPSYS---GLIFVAKQRPQDKPLILMGASLEDLWP 63

Query: 73  H----ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           +    A    +   L + + PG LTLVL       +    T +  T   RVP     ++I
Sbjct: 64  YVSGTAKELDIWQELGQKYLPGALTLVLPASEKIPVAMNPT-DPTTIGIRVPKHQVAQMI 122

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
            +   PLA  SAN SG+ ++ ++  I  + +  E+  + +      G  ST++       
Sbjct: 123 LSKTGPLATTSANLSGEPALLSMNKI--AQVFPEVLTLDEESPPGSGSPSTVIKWTNLG- 179

Query: 189 VRILRPGGLEIETL 202
             ILR G +    L
Sbjct: 180 WEILRQGPIIPSNL 193


>gi|284052762|ref|ZP_06382972.1| hypothetical protein AplaP_14933 [Arthrospira platensis str.
           Paraca]
          Length = 203

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 16/201 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            ++    ++ A   +     I  PT+TV  LA       A   +++ K+RP   PLI   
Sbjct: 3   KVSQEELIKAAIAGV---AVITFPTDTVPALAARPDKAEA---IFQTKQRPPDKPLILMG 56

Query: 65  SDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +    + +        L     +A+ +WPG LTLVL   S      ++  +  T   RVP
Sbjct: 57  ATAESLWQFVDSQTWELECWQQIARQYWPGALTLVLPASSAVP-PAVNPTDPTTIGLRVP 115

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SKIGLES 178
            C    ++++  G PLA  SAN SGQ  +  V  I       E+  + +    S   + S
Sbjct: 116 KCEIALEILKRTG-PLATTSANLSGQPPLLTVADIDRQF--PEVLSLKESPPESGSAIPS 172

Query: 179 TIVNVQCEKKVRILRPGGLEI 199
           T+V         ILR GG+E+
Sbjct: 173 TVVRWTKNGDWEILRSGGVEL 193


>gi|228471567|ref|ZP_04056342.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228277143|gb|EEK15823.1| Sua5/YciO/YrdC/YwlC family protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 186

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 14/196 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  I     +++   FL +G  I  PT+T++GL  D  +   I+R+  IK+R      
Sbjct: 1   MEINEI-----VKETLSFLRSGKVILYPTDTIWGLGCDPYSREGIQRIQAIKQRDIRKSF 55

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-V 119
           I  VS   M++++ +V   +L         P +++   +  + +     A   +  FR V
Sbjct: 56  ILLVSSYQMLQRYVAVSQETLAFLDK-QERPTSVIYTQVYDSHLPE---AADHSLAFRVV 111

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLE 177
              F K LI+ +  PL   SAN SG+ S  N   ++S  I K +  I+     +   G  
Sbjct: 112 KDPFCKALIDAFDAPLVSTSANISGEESPKNFS-LISEQIKKSVDYIVPYRREEQGAGQP 170

Query: 178 STIVNVQCEKKVRILR 193
           S ++ ++ + +V  LR
Sbjct: 171 SQLLKIE-DNQVIFLR 185


>gi|254167519|ref|ZP_04874371.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
 gi|197623782|gb|EDY36345.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
          Length = 180

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 17/195 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E+     P+ +PT+T+YGL +       I ++Y+IK R     +   V++I M+ 
Sbjct: 1   MDKIAEYAKN-EPVVMPTDTLYGLCMSIDGD--INKIYKIKGRSVEKKIPVGVANIEMMG 57

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           K A + P +  L + F PGPLTLVL       +         T   R+P       +   
Sbjct: 58  KIAEITPEAEKLIRAFMPGPLTLVLRNKGIKWL-------GDTVAVRIPAHTLTIYLMEK 110

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+ + SAN SG+ + +    ++  ++  ++   +D G   +G  STI+ +     V +
Sbjct: 111 IGPITLTSANISGEKAPS----VIEDTMKLDVKYRLDCGR-LMGKPSTIIKLIDG--VEL 163

Query: 192 LRPGGLEIETLKRAI 206
           +R G + + ++ R +
Sbjct: 164 IREGAIPMASIMRVL 178


>gi|239503034|ref|ZP_04662344.1| Protein yrdC [Acinetobacter baumannii AB900]
          Length = 189

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3   TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+    S+   +       W          T +L   +   I             RV  
Sbjct: 63  QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--ADQHIPSWIKGEHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN SGQ    +++              ++G +      S I
Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGLSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + +R 
Sbjct: 179 INALTGEVIRP 189


>gi|289596430|ref|YP_003483126.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
 gi|289534217|gb|ADD08564.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
          Length = 189

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 17/198 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             ++ K  E+     P+ +PT+T+YGL +       I ++Y+IK R     +   V++I 
Sbjct: 7   KESVDKIAEYAKN-EPVVMPTDTLYGLCMSIDGD--INKIYKIKGRSIEKKIPVGVANIE 63

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           M+ K A + P +  L + F PGPLTLVL       +         T   R+P       +
Sbjct: 64  MMGKIAEITPEAEKLIRAFMPGPLTLVLRNKGVKWL-------GDTVAVRIPAHTLTIYL 116

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
                P+ + SAN SG+ + +    ++  ++  ++   +D G   +G  STI+ +     
Sbjct: 117 MEKIGPITLTSANISGEKAPS----VIEDTMKLDVKYRLDCGR-LMGKPSTIIRLVDG-- 169

Query: 189 VRILRPGGLEIETLKRAI 206
           V ++R G + + ++ R +
Sbjct: 170 VELIREGAIPMASIMRIL 187


>gi|262281298|ref|ZP_06059079.1| DsRNA-binding protein [Acinetobacter calcoaceticus RUH2202]
 gi|262257124|gb|EEY75861.1| DsRNA-binding protein [Acinetobacter calcoaceticus RUH2202]
          Length = 189

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3   TTSVTEAAESLHQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+    S+   +       W          T +L   +   I             RV  
Sbjct: 63  QVEHLLTSLPEATQQEIIDCWTNHQPSERATTWLLP--AGEHIPSWIKGEHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN SGQ    +++              ++G + +    S I
Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + +R 
Sbjct: 179 INALTGEIIRA 189


>gi|90415413|ref|ZP_01223347.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium
           HTCC2207]
 gi|90332736|gb|EAS47906.1| Sua5/YciO/YrdC/YwlC family protein [marine gamma proteobacterium
           HTCC2207]
          Length = 189

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 5/180 (2%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
            A   L     +A PTE+V+GL  D  +  A+  L  +K R     LI   +        
Sbjct: 12  AAARLLQQQAVVAYPTESVWGLGCDPGSLVAVEELLRLKGRSVSKGLILIAASTEQFSSF 71

Query: 74  AS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
              ++P +L   +     P T ++    +       +    T   RV        L + +
Sbjct: 72  LKGLEPDALLRFQTPQQKPTTWLVPNNGSA--PEWISGGHDTLALRVTDHPLAAALCQLF 129

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL   SAN  GQ +  + + +  +   + + +   G +      S I ++   + VR 
Sbjct: 130 GGPLVSTSANPQGQPAAISAEQV-QAYFGQAVAVQTPGTVGGAVKPSEIRHLLSGEIVRE 188


>gi|158337414|ref|YP_001518589.1| hypothetical protein AM1_4293 [Acaryochloris marina MBIC11017]
 gi|158307655|gb|ABW29272.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 194

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 11/186 (5%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD-- 77
            +G  ++ PT+TV  LA      +   +++  K+R    PLI   +   M+  +   D  
Sbjct: 14  RSGRLVSFPTDTVPALAARPDQAS---QIFAAKQRQPDKPLILMGASPEMLWPYVRKDGK 70

Query: 78  --PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
                  +A  +WPG LTLVL          ++     +   RVP     ++I     PL
Sbjct: 71  ELNQWQQMAADYWPGALTLVLPACDRVP-PAMNPLTPDSIGIRVPNSQVAQMILQQTGPL 129

Query: 136 AIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           A  S NRSGQ ++T V+ I      +   +  +     S   L ST++    +    +LR
Sbjct: 130 ATTSINRSGQPALTTVEAINQHFPDVFTPLASLWPEPQSTEPLPSTVIKWDGQG-WEVLR 188

Query: 194 PGGLEI 199
            G ++I
Sbjct: 189 QGVIQI 194


>gi|126695682|ref|YP_001090568.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542725|gb|ABO16967.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9301]
          Length = 193

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 8/192 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L++GLPI  PT+T+  +      P     +Y+ KKR    PLI   S+   +  
Sbjct: 7   KSALKTLNSGLPIIFPTDTLPAIGCL---PKFSNIIYKFKKRDRNKPLILMGSEYKHLID 63

Query: 73  HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           +          ++A  +WPG LT+V+       ++   T+N  T   R+P     K +  
Sbjct: 64  YVHESAKKDYENIASKYWPGALTIVVPASEKQTVN--LTSNDLTIGLRIPNSCIAKSLLR 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG       + I       +I   I    S  G  STI+  +     R
Sbjct: 122 ETGPLLTSSANISGFKGSITAEGIALDFPSVKIYGPIPWEKS-SGKASTIIFWKKSGNWR 180

Query: 191 ILRPGGLEIETL 202
           ++R G + ++ L
Sbjct: 181 LIREGEVLVKEL 192


>gi|325124149|gb|ADY83672.1| putative SUA5/YciO/YrdC/YwlC family protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 189

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     IS
Sbjct: 3   TTSVTEAAECLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIS 62

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+    S+   +       W          T +L   +   I             RV  
Sbjct: 63  QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--AGEHIPSWIKGEHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN SGQ    +++              ++G + +    S I
Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + +R 
Sbjct: 179 INALTREIIRA 189


>gi|15603135|ref|NP_246207.1| hypothetical protein PM1270 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|81636744|sp|Q9CLG4|RIMN_PASMU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|12721629|gb|AAK03354.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 183

 Score =  129 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 8/183 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +++  E L     +A PTE V+GL  +  + +A+++L  +K+R     LI     +    
Sbjct: 3   IQQIVEQLKQNEVVAYPTEAVFGLGCNPNSESAVQKLLVLKQRSVEKGLILVAPCLDYFL 62

Query: 72  KHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKL 127
                           +  +  P T V+   +TT      T    +   R       K+L
Sbjct: 63  PFIDTTAFSQADWDRLQAKYDRPTTWVVPAKTTT--PKFLTGQFDSIAVRLCDHPAVKQL 120

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            E  G  L   SAN +        + +  +    + P ++D  + +    S I ++   +
Sbjct: 121 CEQAGFALTSTSANLTTLPPCRTAEEV-KTQFGADFP-VLDLPVGEATNPSEIRDLFTHQ 178

Query: 188 KVR 190
             R
Sbjct: 179 LFR 181


>gi|188994286|ref|YP_001928538.1| hypothetical protein PGN_0422 [Porphyromonas gingivalis ATCC 33277]
 gi|188593966|dbj|BAG32941.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 200

 Score =  129 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 12/201 (5%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAM 57
           I+ I   N     L +A   L  G  I  PTE  Y    D+    ++ R+ E+K   P  
Sbjct: 2   IIKIYPDNPNRRELERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRR 61

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             L    SD+SM  ++  +D  +    K       T VL   S+    P    N K    
Sbjct: 62  KNLSIMCSDMSMAAEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSL---PKVFKNRKQVGI 118

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIG 175
           R+     T+ L E+ G PL   S     +     +   ++       + +++DGGI    
Sbjct: 119 RLALHPLTRLLAESLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGIIPFE 178

Query: 176 LESTIVNVQCEKKVRILRPGG 196
             +T+V+        ILR GG
Sbjct: 179 Q-TTVVDCTVS-PYTILREGG 197


>gi|34541326|ref|NP_905805.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83]
 gi|34397642|gb|AAQ66704.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas gingivalis W83]
          Length = 200

 Score =  129 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 12/201 (5%)

Query: 3   IMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAM 57
           I+ I   N     L +A   L  G  I  PTE  Y    D+    ++ R+ E+K   P  
Sbjct: 2   IIKIYPDNPNRRELERAVSALRDGKVIIYPTEVGYAYGCDALQNRSVERICELKGVDPRR 61

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
             L    SD+SM  ++  +D  +    K       T VL   S+    P    N K    
Sbjct: 62  KSLSIMCSDMSMAAEYCRIDNEAFRYMKDNHMQKYTFVLPAGSSL---PKVFKNRKQVGI 118

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGGISKIG 175
           R+     T+ L E+ G PL   S     +     +   ++       + +++DGGI    
Sbjct: 119 RLALHPLTRLLAESLGSPLLTGSLPLDPETPEYASDPELIEERYGLTVEMVLDGGIIPFE 178

Query: 176 LESTIVNVQCEKKVRILRPGG 196
             +T+V+        ILR GG
Sbjct: 179 Q-TTVVDCTVS-PYTILREGG 197


>gi|291565855|dbj|BAI88127.1| putative translation factor (SUA5) [Arthrospira platensis NIES-39]
          Length = 203

 Score =  129 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 16/201 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            ++    ++ A   +     I  PT+TV  LA       A   +++ K+RP   PLI   
Sbjct: 3   KVSQEELIKAAIAGV---AVITFPTDTVPALAARPDKAEA---IFQTKQRPPDKPLILMG 56

Query: 65  SDISMVKKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +    + +        L     +A+ +WPG LTLVL   S      ++  +  T   RVP
Sbjct: 57  ATAESLWQFVDSQTWELECWQQIARQYWPGALTLVLPASSAVP-PAVNPTDPTTIGLRVP 115

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SKIGLES 178
            C    ++++  G PLA  SAN SGQ  +  V  I       E+  + +    S   + S
Sbjct: 116 KCEIALEILKRTG-PLATTSANLSGQPPLLTVADIDRQF--PEVLSLKESPPESGSAIPS 172

Query: 179 TIVNVQCEKKVRILRPGGLEI 199
           T+V         ILR G +E+
Sbjct: 173 TVVRWTKNGDWEILRSGAVEL 193


>gi|170590097|ref|XP_001899809.1| yrdC domain containing protein [Brugia malayi]
 gi|158592728|gb|EDP31325.1| yrdC domain containing protein [Brugia malayi]
          Length = 232

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 20/229 (8%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +++S    A+ +  +  ++G  +A+PT+TVYG+A    N     +LY++K+R  + 
Sbjct: 10  KIIRLSESTYSAAICRCLQIFESGGIVALPTDTVYGVATALPNSD---KLYKLKRRSRLK 66

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PL   VS++  V++      +  +  +   PGP+TL+ +   +T +  +      T   R
Sbjct: 67  PLGLFVSNVREVQRWCHQT-IDNNQLRTLLPGPVTLIFER--STSLPSIFNPEHGTVGIR 123

Query: 119 VPCG-FTKKLIETY-GHPLAIPSANRS-GQISITNVKHILSSSICKEIPLIIDGGI---- 171
           +P   F + L+      PLA  SAN S  Q S   ++      +  E+ LIID GI    
Sbjct: 124 IPDHDFVRSLMTRLDDVPLAQTSANISNDQSSPVCIED--FKDLWPELDLIIDDGIVFQR 181

Query: 172 -SKIGLE-STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
              +  E ST+VN+       I+R G     T ++     L    D   
Sbjct: 182 DGNVNREGSTVVNLSIPGTYSIIRDGCARTATEEKLRDCGLIGSSDGDC 230


>gi|332968321|gb|EGK07392.1| translation factor RimN [Kingella kingae ATCC 23330]
          Length = 209

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 5/182 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +    L  G  +A PTE+ YGL     N   +R L  +KKRP    +I   ++ S +
Sbjct: 31  QIAQLRAHLKRGGVVAYPTESCYGLGALPDNVRGLRTLLRLKKRPQHKGMIVIGANWSQL 90

Query: 71  KKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLI 128
           + H   +    +   +  WP P T++L    T  +  L          R+P     + L 
Sbjct: 91  QPHLCRLPCDDVAALQAIWPAPKTVLLPAKPTV-LPNLRGRGRNKLAVRIPAHDIARGLC 149

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +     L   S NR+ Q    N + +           ++ G + +    S IV+   +++
Sbjct: 150 QQVQAALVSTSCNRAKQRPCRNEREVRRQF--GRQVYVVGGRVGRRRQPSEIVDWASQQR 207

Query: 189 VR 190
           +R
Sbjct: 208 IR 209


>gi|261856053|ref|YP_003263336.1| Sua5/YciO/YrdC/YwlC family protein [Halothiobacillus neapolitanus
           c2]
 gi|261836522|gb|ACX96289.1| Sua5/YciO/YrdC/YwlC family protein [Halothiobacillus neapolitanus
           c2]
          Length = 208

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 4/194 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E L  G  I +PT++ Y LA    + TA+ ++ +I++    + +     D+S
Sbjct: 14  PRLVTQIAEALSDGSVIVLPTDSGYTLACRLEDKTALAKIAQIRRDNEPHHMTLLCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +  +A +D       K   PGP T +L+  S      L  A  ++   RVP     + +
Sbjct: 74  EISTYAKLDNQHYRFLKTHTPGPYTFILEATSEVP-RRLLHAKKRSIGLRVPQNTVLRSV 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E    P+   S                  ++ +++ +I+  G       ST++++  ++
Sbjct: 133 LEELAAPILSASLVLPDHNEPLEDPEWFPRAVERQVDMIVSTGFHAQN-PSTVIDMTGDE 191

Query: 188 KVRILRP-GGLEIE 200
            V +    GG+  E
Sbjct: 192 FVLVREGLGGIPPE 205


>gi|313679703|ref|YP_004057442.1| translation factor sua5 [Oceanithermus profundus DSM 14977]
 gi|313152418|gb|ADR36269.1| translation factor SUA5 [Oceanithermus profundus DSM 14977]
          Length = 197

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 13/192 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  +A PT+T +GL   +  P A+ R+Y +K R    PL   V+D++  ++      
Sbjct: 12  LRRGGLLAWPTDTTWGLLARADRPEALARIYRVKGRDPAKPLQLLVADLAAARRLLDPGW 71

Query: 79  LSL---HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134
            +     LA+ FWPG LTLV+         P +  +      R+P     ++L+   G  
Sbjct: 72  DAAPFERLARAFWPGALTLVVPAGPEA---PEACVHEGKVGLRLPADPELRRLLARAGGY 128

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
            A  S N SG+  +   +  L      +    I  G +     ST+V++      RILR 
Sbjct: 129 AAATSLNPSGRPPVLRYRDALR---YADWVDRIHPGEAGGTEASTVVDLTV---PRILRE 182

Query: 195 GGLEIETLKRAI 206
           G +    ++R +
Sbjct: 183 GAVPAADVRRLL 194


>gi|139439320|ref|ZP_01772762.1| Hypothetical protein COLAER_01778 [Collinsella aerofaciens ATCC
           25986]
 gi|133775344|gb|EBA39164.1| Hypothetical protein COLAER_01778 [Collinsella aerofaciens ATCC
           25986]
          Length = 247

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 37/234 (15%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAV--DSR----------------------NPTAI- 45
           A+ +  E L  G    IPTETVYG+AV  ++                       N  A+ 
Sbjct: 18  AVERTAELLGRGGLALIPTETVYGVAVAVNAFSDAVPQDTSEPLPWPRDPQATVNGAAVP 77

Query: 46  ------RRLYEIKKRPAMNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDL 98
                 RR++ +K+R     +   V D   + ++   +   +  LA+  WPG LT+V+  
Sbjct: 78  ALGTGYRRIFTLKQRELTQTVAWLVDDAEALDRYGVDIPNEARVLARRCWPGALTIVVKA 137

Query: 99  LSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
                +     A   T   R       + LI   G PLA  SAN  G  S  +   +   
Sbjct: 138 APC--VPTFMRAADDTVALRASASPVVQALIRACGSPLACTSANTHGAPSPASFAAVEGR 195

Query: 158 SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
            +   + + +D G +     STIV+ Q    ++ILR G L    ++R +S  ++
Sbjct: 196 ILEG-VDVAVDAGETPCRDASTIVSFQHGG-LQILRQGALPASEIERVLSDPMQ 247


>gi|123965586|ref|YP_001010667.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9515]
 gi|123199952|gb|ABM71560.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9515]
          Length = 193

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 8/193 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A E L+ GLPI   T+T+  +      P     +Y+IK+R    PLI   ++   + +
Sbjct: 7   KLAVEKLNIGLPIIFHTDTLPAIGCL---PKFSEIIYKIKQRDVKKPLILMGAESFQLNE 63

Query: 73  HAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                      ++A  +WPGPLT+++ +   +   PL +    T   R+P       +  
Sbjct: 64  FVHKTAFEDYKYMASRYWPGPLTMIIPISEKSK--PLFSNKNLTLGLRIPNSIMANYLIK 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG    TN K I       +I   +       G  STI++    +K +
Sbjct: 122 ESGPLLTSSANISGLPPSTNAKDISFDLPNVDILGPVPWPKC-SGKASTIISWVNNEKWK 180

Query: 191 ILRPGGLEIETLK 203
           ++R G + I  +K
Sbjct: 181 LIREGEVFIPGIK 193


>gi|75907707|ref|YP_322003.1| SUA5/yciO/yrdC-like protein [Anabaena variabilis ATCC 29413]
 gi|75701432|gb|ABA21108.1| SUA5/yciO/yrdC-like protein [Anabaena variabilis ATCC 29413]
          Length = 194

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 11/186 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  ++ PT+TV  L   +  P     ++  K+R    PLI   +    +  +     
Sbjct: 13  VRTGGLVSFPTDTVPAL---ATLPEQAGLIFAAKQRSQDKPLILMAASAEDLWPYVEGSE 69

Query: 79  LSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTA-NLKTACFRVPCGFTKKLIETYGH 133
               + +     +WPG LTLVL   ++  +  +    +  T   RVP     + I +   
Sbjct: 70  QDQQIWEQVVSQYWPGALTLVLP--ASKRVPKVMNPIDPTTIGIRVPKNAIAQKILSQTG 127

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PLA  SAN SGQ ++  +  I +              +  IGL ST+     E   +ILR
Sbjct: 128 PLATTSANFSGQPALLTMAEIDAQFPSVLTLESTALEMEGIGLPSTVAKWTGEN-WQILR 186

Query: 194 PGGLEI 199
            G + +
Sbjct: 187 QGAVSL 192


>gi|256372569|ref|YP_003110393.1| SUA5/yciO/yrdC domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009153|gb|ACU54720.1| SUA5/yciO/yrdC domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 225

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 12/210 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
            A R+A   LD G  + +PT+TV GL   + +  A+ R+  +K R    P    V  I  
Sbjct: 20  EAFRRAATILDGGSVLLMPTDTVPGLVGSATSRRALERIAVLKGRSTTTPPPVLVGSIDE 79

Query: 70  VKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
              +A     S L      WPGP++ V+D  +  D+      + ++   RVP       +
Sbjct: 80  ALAYAEPRRRSRLRALGALWPGPISAVVDAPTLADV---VNPSGRSVALRVPDVEWLAEL 136

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSS------ICKEIPLIIDGGISKIGLESTIVN 182
              G PLA  SAN  G  + ++V   L+        +   +  ++        + STIV+
Sbjct: 137 -ATGRPLAASSANWHGVATPSDVDTALADLVAHGSPVAGRLAGVLWAPGPSGRVASTIVD 195

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEY 212
           +    +VR+LR G +    ++  +   +E 
Sbjct: 196 LTG-PQVRVLRQGAVAPSDVEAVLGEPVEV 224


>gi|91069910|gb|ABE10839.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone ASNC2150]
          Length = 193

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 8/192 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L +GLPI  PT+T+  +      P     +YE KKR    PLI   S+   +  
Sbjct: 7   KSALKTLKSGLPIIFPTDTLPAIGCL---PKFSNIIYEFKKRDRDKPLILMGSEHKQLID 63

Query: 73  HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           +          ++A  +WPG LT+V+          + T+N  T   R+P  +  + +  
Sbjct: 64  YVHESAKEDYENIASKYWPGALTMVIPASEKQT--TILTSNDLTLGLRIPNSYMAQSLMR 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG      V+ I       +I   I  G  + G  STI+  +     R
Sbjct: 122 ETGPLLTSSANISGFKGSITVEGIALDFPTLKILGPIPWGK-RSGKASTIIFWKKSGDWR 180

Query: 191 ILRPGGLEIETL 202
           ++R G + +  L
Sbjct: 181 LIRQGEVLVREL 192


>gi|118489827|gb|ABK96713.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 313

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 19/210 (9%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +D+  L    E L  G    IPT+TVY +  D ++ +AI RL  IK      PL      
Sbjct: 82  SDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKPLSILCHS 141

Query: 67  ISMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTD---IHPLST----AN 111
           +  +  + +  P              K   PGP T +L          +   +T    A+
Sbjct: 142 LRDIDTYTTGFPRGDGQGHADIFRAVKHCLPGPYTFILTASKELPKQCVRFGTTTAKYAS 201

Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC-KEIPLIIDG 169
            K    R+P     + ++E    PL   S     +        +++     + +  +++G
Sbjct: 202 RKNVGIRMPDDAICQAILEKMDAPLISTSVRSPKENEWMIDPVVIADIYGLEGLDFVVNG 261

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           GI ++   ST+V++      +I+R G    
Sbjct: 262 GI-RVADPSTVVDMTGSSP-KIIRQGKGPK 289


>gi|229816322|ref|ZP_04446629.1| hypothetical protein COLINT_03372 [Collinsella intestinalis DSM
           13280]
 gi|229808078|gb|EEP43873.1| hypothetical protein COLINT_03372 [Collinsella intestinalis DSM
           13280]
          Length = 214

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 18/205 (8%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIR-----------RLYEIKKRPAMNPLICH 63
           A + L AG    +PTETVYG+ V + +  A             R++ +K+R     +   
Sbjct: 14  AADCLTAGGLALVPTETVYGVGV-AISAFAANLETPGPDTGYGRIFTLKQRELTQTVPWL 72

Query: 64  VSDISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           V   + ++++    P S+  LA+  WPG LTLV+   +  D+     A   T   R    
Sbjct: 73  VDGPAALERYGKDVPHSICALAEKLWPGALTLVVP--AADDVPSFMRAADGTVALRASAS 130

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              ++LI   G PLA+ SAN  G+ +  +   +    +   + + +D G +     STIV
Sbjct: 131 PVVQELIARCGSPLAVTSANTHGKPAPISFDEVEPRILAG-VDVAVDAGETPCRDASTIV 189

Query: 182 NVQCEKKVRILRPGGLEIETLKRAI 206
            V+ + +++ILR G L +  ++  +
Sbjct: 190 AVR-DGELQILREGALAVREIRAVL 213


>gi|254166891|ref|ZP_04873745.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
 gi|197624501|gb|EDY37062.1| Sua5/YciO/YrdC/YwlC family protein [Aciduliprofundum boonei T469]
          Length = 180

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 17/195 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K  E+     P+ +PT+T+YGL +       I ++Y+IK R     +   V++I M+ 
Sbjct: 1   MDKIAEYAKN-EPVVMPTDTLYGLCMSIDGD--INKIYKIKGRSIEKKIPVGVANIEMMG 57

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           K A + P +  L + F PGPLTLVL       +         T   R+P       +   
Sbjct: 58  KIAEITPEAEKLIRAFMPGPLTLVLRNKGVKWL-------GDTVAVRIPAHTLTIYLMEK 110

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
             P+ + SAN SG+ + +    ++  ++  ++   +D G   +G  STI+ +     V +
Sbjct: 111 IGPITLTSANISGEKAPS----VIEDTMKLDVKYRLDCGR-LMGKPSTIIRLVDG--VEL 163

Query: 192 LRPGGLEIETLKRAI 206
           +R G + + ++ R +
Sbjct: 164 IREGAIPMASIMRIL 178


>gi|289547987|ref|YP_003472975.1| Sua5/YciO/YrdC/YwlC family protein [Thermocrinis albus DSM 14484]
 gi|289181604|gb|ADC88848.1| Sua5/YciO/YrdC/YwlC family protein [Thermocrinis albus DSM 14484]
          Length = 201

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 15/207 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAI-PTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +   + + +  E +  G  IA  PT+T+YGL  ++ +  A+ RL+ I +RP+  P +  +
Sbjct: 4   VVSPSKVFRVAEVILEGG-IAFAPTDTIYGLLANALDRRAVERLFAI-RRPSGRPFLLLI 61

Query: 65  SDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-- 121
                +++   +  P    L  L     +TLV+     T +    T   K+   R+P   
Sbjct: 62  PQEDWIEELGLIIGPRQRKLLSL----GITLVIP--KRTSVPLYLTRGRKSLAVRLPSST 115

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            GF + L++  G PL  PSAN  G    T+VK  + +   + + + +D G   +G  STI
Sbjct: 116 AGFIRDLLKVVGVPLVAPSANPEGLKPATSVKEGM-AYFGRRVNIYVDAGK-IVGKPSTI 173

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAIS 207
           V +   + VR++R G +    + R +S
Sbjct: 174 VRLIGYRSVRLVREGNVPFREVLRFLS 200


>gi|326331013|ref|ZP_08197312.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325951224|gb|EGD43265.1| Sua5/YciO/YrdC/YwlC family protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 209

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 4/192 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  + L     IA PT++ Y L     N     R+  I+     +       D +
Sbjct: 14  PRLISQVVDALRDDQLIAYPTDSGYALGSRIGNKDGRDRILRIRGLDDRHHFTLICKDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +     VD  +    K   PGP T +L          L     KT   R+P     + L
Sbjct: 74  QLGTMVHVDNSAFRAIKHATPGPYTFILPATPEVP-RRLMHPKKKTVGVRIPEHAVVQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +E  G PL   +    G+         +  ++  ++ ++I+ G +     +T+++   + 
Sbjct: 133 LEELGEPLLSSTLILPGETEPEVFGWNVKEALDHQVDIVIEAGETPA-EPTTVIDW-SDG 190

Query: 188 KVRILRPGGLEI 199
           +  I+R G  ++
Sbjct: 191 QPEIIRQGAGDV 202


>gi|309379826|emb|CBX21602.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 166

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 5/168 (2%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH-L 83
           +A PTE+ YGL        A+ +L  +KKRP    +I   +    ++    +   SL  +
Sbjct: 2   VAYPTESCYGLGCLPTLAKALGKLAHLKKRPQHKGMIVIGNQFEQLQPLLQMPSESLQAM 61

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANR 142
            +  WP P T +L    +  +  L          R+P     ++L +  G PL   S NR
Sbjct: 62  LRKEWPAPKTFLLS-AKSCVLPELRGKQRSKLAVRIPDHAGARRLCQALGMPLVSTSCNR 120

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G+ +    + +           I+ G I +    S I++ +  K++R
Sbjct: 121 AGKRACRTEREVRRQF--GRDVWIVGGRIGRQKSPSQIIDGETGKRLR 166


>gi|157412681|ref|YP_001483547.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387256|gb|ABV49961.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9215]
          Length = 193

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 8/192 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L +GLPI  PT+T+  +      P     +YE KKR    PLI   ++   +  
Sbjct: 7   KSALKTLKSGLPIIFPTDTLPAIGCL---PEFSNIIYEFKKRDKDKPLILMGAEHKQLID 63

Query: 73  HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           + +        ++A  +WPG LT+V+    T     + T+N  T   R+P  +  + +  
Sbjct: 64  YVNESAKKDYENIASKYWPGALTMVIPASETHT--TIITSNDLTLGLRIPNSYMAQSLIR 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG      V+ I       +I   I  G    G  STI+  +     R
Sbjct: 122 ETGPLLTSSANLSGFKGSITVEGISQDFPSVKILGPIPWGK-ISGKASTIIFWKKSGDWR 180

Query: 191 ILRPGGLEIETL 202
           ++R G + ++ L
Sbjct: 181 LIREGEVLVKEL 192


>gi|315604269|ref|ZP_07879335.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313975|gb|EFU62026.1| Sua5/YciO/YrdC/YwlC family protein [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 205

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 8/204 (3%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M  + +   N     +    + L+ G  IA+PT++ Y +A    N   +  +  I+K   
Sbjct: 1   MSYVEMHPENPQARLVSTVVDLLERGGTIALPTDSGYAIATKIGNKAGMDTIRAIRKLDD 60

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            +         + + +   +D       K   PGP T +L          L+     T  
Sbjct: 61  KHNFSLLCHSFAQLGELVLIDNHEFRTMKALTPGPYTFILRGTKEVPRIMLNKKKH-TVG 119

Query: 117 FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R+P    T+ ++   G PLA  +    G+         +   I  ++ L++ G    + 
Sbjct: 120 VRIPDHVITQAIVGALGEPLACSTLIMPGEEEPLTDGFDVDERIGHQVDLVVVG-PVGVA 178

Query: 176 LESTIVNVQCEKKVRILRPGGLEI 199
             +T++N      V + R G  ++
Sbjct: 179 EPTTVINFAGGDAV-VARVGAGDV 201


>gi|317968708|ref|ZP_07970098.1| translation factor [Synechococcus sp. CB0205]
          Length = 195

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 11/191 (5%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A E L  G     PT+T+  L   +  P     L+ IK+RP   P+I   +D   +  + 
Sbjct: 11  AAE-LQQGQAGVFPTDTLPAL---ATRPEHASLLWTIKERPQNKPVILMGADAEQLFSNL 66

Query: 75  SVDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
            + P    L L +  WPG LTLV+   +  +              RVP C   ++L+   
Sbjct: 67  GMTPEPSWLRLMEQHWPGALTLVVP--AEGERLEQLNPGGSALGLRVPACEQARELLRLS 124

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PLA  S NRSG+   T+ + +  +   + + L  +   +  G  ST++ ++     R+
Sbjct: 125 G-PLATTSTNRSGEDPCTSAEEV-QARFPQLLRLAPEPWPAPSGQASTVIALEPGGGWRL 182

Query: 192 LRPGGLEIETL 202
           LR G +  + L
Sbjct: 183 LRAGAVMPQEL 193


>gi|262376934|ref|ZP_06070161.1| YrdC [Acinetobacter lwoffii SH145]
 gi|262308279|gb|EEY89415.1| YrdC [Acinetobacter lwoffii SH145]
          Length = 189

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A  +L  G  +A PTE V+GL  D  N  A  ++ E+K+RP    +I   + +S
Sbjct: 3   TTSVAEAAAWLKDGQVLAYPTEAVWGLGCDPYNEQAFHQILELKQRPIEKGVILLAAHLS 62

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+     +           W          T +L   +  DI      +      RV  
Sbjct: 63  QVEHLLQDLSEEMREKVIETWKHDRPAERATTWLLP--ANKDIPDWIKGHHPKVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L + +G  +   SAN +G     +++  +      +    ++G +      S I
Sbjct: 121 HPLCVALCQAFGGFIVSTSANPAGMEPARSLQDAIR--YFDQNLNYLNGDLGLSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           ++      +R 
Sbjct: 179 IDAVTGAIIRD 189


>gi|253998091|ref|YP_003050154.1| SUA5/yciO/yrdC domain-containing protein [Methylovorus sp. SIP3-4]
 gi|313200156|ref|YP_004038814.1| sua5/ycio/yrdc domain-containing protein [Methylovorus sp. MP688]
 gi|253984770|gb|ACT49627.1| SUA5/yciO/yrdC domain protein [Methylovorus sp. SIP3-4]
 gi|312439472|gb|ADQ83578.1| SUA5/yciO/yrdC domain protein [Methylovorus sp. MP688]
          Length = 181

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 6/181 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R+   +L  G  IA PTE+ +GL  D  +   ++R+  +K RP    LI      +  K+
Sbjct: 5   RELRHYLRHGGVIAYPTESCFGLGCDPHSRLGVQRILRLKGRPQRKGLILIGDQQTRFKR 64

Query: 73  H-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIET 130
             A + P         WPGP T ++       I         +   RV     + +L   
Sbjct: 65  LIAPLSPEQQARVATTWPGPHTWLVPHAEDCPI--WLHGRHPSLAVRVTAHPLSARLCRM 122

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G  L   SAN++G       +      +  +   +I G        STI ++   + +R
Sbjct: 123 AGMALVSTSANKAGHAPAKTTRKC--RQLFGQRVRVIAGLTGGARKPSTIQDLITGRILR 180

Query: 191 I 191
            
Sbjct: 181 P 181


>gi|168009850|ref|XP_001757618.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691312|gb|EDQ77675.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 154

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +      ++A   L     IA+PT+T+YGLA D+ +  AIRR+YEIK+R   +PL   VS
Sbjct: 1   MAREEHYKEAVRALGNEQVIAVPTDTLYGLACDASSAEAIRRVYEIKERKLSSPLAVCVS 60

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFT 124
           D+ +V  +     L   L     PG +TL+L       +       + +   R+P   F 
Sbjct: 61  DVDVVAAYGETAQLPAGLLNALLPGAVTLLLPRREPGFLSASLNPGIGSIGIRIPDSDFI 120

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKH 153
           + +  ++G  +A+ SAN S   S   ++ 
Sbjct: 121 RGVARSFGGAVALTSANTSSHASTVRIEE 149


>gi|297832740|ref|XP_002884252.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330092|gb|EFH60511.1| yrdC family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 305

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/209 (22%), Positives = 75/209 (35%), Gaps = 19/209 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  L+   E L  G    IPT+TVY L  D +N +A+ RL  IKK  +  PL      +
Sbjct: 77  DSWKLQPVIELLKQGAVGVIPTDTVYALVCDCKNHSAVERLRRIKKIESSKPLSILCRSL 136

Query: 68  SMVKKH--------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-------PLSTANL 112
             +           A          K   PGP T +L                 +  A+ 
Sbjct: 137 RDIDTFTMGFPRGDAHGHANVFRAVKQCLPGPYTFILTASKELPKQCVGYGTTSVKYASR 196

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGG 170
           K    R+      + ++     PL   S     +         +      E +  ++DGG
Sbjct: 197 KYVGVRISDDPLCQAILHEMDAPLISTSVKGPKENEWMIDPTAIGDIYGPEGLDFLVDGG 256

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           + ++   STIV++      +++R G   I
Sbjct: 257 V-RVAEPSTIVDMTGPYP-KVIRQGKGPI 283


>gi|225451447|ref|XP_002273946.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082345|emb|CBI21350.3| unnamed protein product [Vitis vinifera]
          Length = 306

 Score =  127 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 23/215 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S TDS  L    + L  G    IPT+TVY +    R+ +AI RL  IK   A  PL    
Sbjct: 72  SGTDSWKLEPVADLLKEGAVGVIPTDTVYAIVCHLRSHSAIERLRRIKDIEASKPLSILC 131

Query: 65  SDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST------- 109
             +  +  + +  P              K   PGP T +L   ++ ++    T       
Sbjct: 132 RSLRDIDTYTTGFPCGIGQGQTNIFRAVKHCLPGPYTFILT--ASKELPKQCTRYGTTTA 189

Query: 110 --ANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPL 165
             A+ K    R+P     K +++    PL   S     +         ++     E +  
Sbjct: 190 KYASRKNVGVRMPDDAICKAILQMMDAPLIATSVKSPKENEWMLDPITIADVYGPEGLDF 249

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           ++DGG+ ++   ST+V++   +  +I+R G    +
Sbjct: 250 VVDGGV-RVADPSTVVDMTG-RTPKIIRQGKGPKQ 282


>gi|262276080|ref|ZP_06053889.1| YrdC family protein [Grimontia hollisae CIP 101886]
 gi|262219888|gb|EEY71204.1| YrdC family protein [Grimontia hollisae CIP 101886]
          Length = 163

 Score =  127 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 4/156 (2%)

Query: 41  NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS 100
           N  A+ R+  I++    +       D+S +  +A VD  +  L +   PG  T +L    
Sbjct: 3   NKQALERICRIRRLDDKHNFTLMCRDLSELSLYARVDNSAYRLIRNNTPGRYTFILKATK 62

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
                 L     KT   RVP       L++  G P+   S    G     +    +   +
Sbjct: 63  EVP-RRLLNPKRKTIGIRVPDNQIALDLLDALGEPMMSTSLILPGNEHTESDPEAIRDQL 121

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
              +  I++GG       +T+V++  + +  ILR G
Sbjct: 122 EHAVDCILNGGYLGE-QPTTVVDM-SDGEPNILRRG 155


>gi|293611139|ref|ZP_06693437.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826390|gb|EFF84757.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 189

 Score =  127 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A + L  G  +A PTE V+GL  D  N  A +++ E+K+RP    +I     I+
Sbjct: 3   TTSVTEAAQCLQQGQVLAYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHIN 62

Query: 69  MVKK-HASVDPLSLHLAKLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+    S+   +       W          T +L   +   I             RV  
Sbjct: 63  QVEHLLTSLPQTTQQEIIDCWTNHQPSERATTWLLP--AGEHIPSWIKGEHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN SGQ    +++              ++G + +    S I
Sbjct: 121 HPLCVALCNAFHGFIVSTSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + +R 
Sbjct: 179 INALTREIIRA 189


>gi|241767112|ref|ZP_04764882.1| SUA5 domain protein [Acidovorax delafieldii 2AN]
 gi|241362315|gb|EER58317.1| SUA5 domain protein [Acidovorax delafieldii 2AN]
          Length = 165

 Score =  127 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETSTPQSP 223
           L++DGG   +G+ESTIV+      V +LRPG +    +  A  +  L        TP++ 
Sbjct: 2   LVLDGGPCAVGIESTIVDCTRGVPV-LLRPGAITRAQIAAACGLQPLSKEELPAHTPRAS 60

Query: 224 GMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT-------GKLK 276
           G L++HYAP ++VRL           +   +     +    +    S            +
Sbjct: 61  GTLEAHYAPAAKVRLMDAAALQTALDLLGADAAHIAVYARTMPRTQSTRLVMRRMPDDAE 120

Query: 277 EAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             A  LF  ++  DD G   I   + P       + +RL+RAAA
Sbjct: 121 ATAQQLFAALRAFDDQGVKLIWIETPPATAAWEGVRDRLQRAAA 164


>gi|55379248|ref|YP_137098.1| DNA-binding protein [Haloarcula marismortui ATCC 43049]
 gi|55231973|gb|AAV47392.1| DNA binding protein [Haloarcula marismortui ATCC 43049]
          Length = 210

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 8/185 (4%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLH 82
             +  PTETVYGL  D+ +  A+ R+++ K R    P+   V DI   +++  +    L 
Sbjct: 31  KLVVYPTETVYGLGADALDAAAVERVFDAKGRERDKPVSLAVPDIESAREYTRLSDRELA 90

Query: 83  LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANR 142
             + F PGP+T+V++      +  +  A       RVP       +     PL   SAN 
Sbjct: 91  FMREFLPGPVTVVVERRDV--VPDVLVAGQDRVGVRVPDHDLALELLAETGPLTATSANI 148

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SG  S+  V  +   +I +   +++D G +  G  ST+VNV        +   G   + +
Sbjct: 149 SGNPSVRTVDDL--DAIRERAAVVLDAGETDGGTGSTVVNVDSG----TIHRRGARADAV 202

Query: 203 KRAIS 207
           K  ++
Sbjct: 203 KSWLN 207


>gi|210634580|ref|ZP_03298176.1| hypothetical protein COLSTE_02098 [Collinsella stercoris DSM 13279]
 gi|210158765|gb|EEA89736.1| hypothetical protein COLSTE_02098 [Collinsella stercoris DSM 13279]
          Length = 220

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGL----------AVDSRNPTAIRRLYEIKKRPAM 57
           D   L  A + L AG    +PTETVYG+               + T   R++ +K R   
Sbjct: 12  DEEQLASAAKRLLAGDLALLPTETVYGVGVAVNAYLDSGGLPGSETGYGRIFTLKHRDTS 71

Query: 58  NPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             +   V     + ++ ASV      LA   WPG LTLV+   +   +     A   T  
Sbjct: 72  QTVPWLVDGPDALDRYGASVPDAIRTLAAECWPGALTLVVP--AAARVPHFMRAADGTVA 129

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
            R       + LI   G PLA+ SAN  G  +  +   +    +   + L +D G +   
Sbjct: 130 LRASASPVIQDLIRATGSPLAVTSANTHGYPAPASFAEVEPRILEG-VDLAVDAGETACR 188

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
             STIV V+    V ILR G L  ET+ R +
Sbjct: 189 DASTIVAVRDGAPV-ILRQGALPAETIARLL 218


>gi|33860877|ref|NP_892438.1| hypothetical protein PMM0319 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633819|emb|CAE18778.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 194

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 11/202 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M++ D    + A E L++G PI   T+T+  +      P     +Y+IKKR    PLI  
Sbjct: 1   MNVIDQ---KLALEKLNSGSPIVFQTDTLPAIGCL---PKFSEMIYKIKKRDIKKPLILM 54

Query: 64  VSDISMVKKHASVDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            ++            L    ++A  +WPGPLT+++   S       ST+N  T   R+P 
Sbjct: 55  GAENFEFDDFVHESALGDFKYIASCYWPGPLTIIIP-CSEKRRSFSSTSNF-TLGLRIPN 112

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               KL+     PL   SAN SG  + T+ K I  +     I   I       G  STI+
Sbjct: 113 SKMAKLLLKESGPLLTSSANLSGLPTATSAKEISVNLPNVNILGPIPWEKC-SGKASTII 171

Query: 182 NVQCEKKVRILRPGGLEIETLK 203
                 K +I+R G + I  +K
Sbjct: 172 TWVNHGKWKIIREGEVSIPGIK 193


>gi|33241612|ref|NP_876553.1| SUA5 protein [Chlamydophila pneumoniae TW-183]
 gi|33236120|gb|AAP98210.1| SUA5 protein [Chlamydophila pneumoniae TW-183]
          Length = 286

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 17/204 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +    +  G  +A+PT+TVYG  +    P A  RLY +K R        +V+ I  +
Sbjct: 11  SLPEVMSAIHQGKIVALPTDTVYGFVLSLYAPEAEERLYALKDREPSKAFALYVNSIEDI 70

Query: 71  KKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +  +   + P +  LA+LF PG +TLV+        H       +T  FR+      +++
Sbjct: 71  ENISGYPLSPTAKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREI 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G  L   SAN S   S    + I +        L I  G    GLEST+V      
Sbjct: 123 VDHCGT-LIGTSANLSEFPSALTAQEIFADFADH--DLCIFDGPCSHGLESTVV---ASD 176

Query: 188 KVRILRPGGLEIETLKRAISVELE 211
            + I R G +    ++     E +
Sbjct: 177 PLYIYREGLISRSVIENIAGTEAK 200


>gi|17227612|ref|NP_484160.1| hypothetical protein alr0116 [Nostoc sp. PCC 7120]
 gi|17135094|dbj|BAB77640.1| alr0116 [Nostoc sp. PCC 7120]
          Length = 194

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 19/189 (10%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS----V 76
           AG  ++ PT+TV  L   +  P     ++  K+R    PLI   +    +  +       
Sbjct: 15  AGGLVSFPTDTVPAL---ATLPEQAELIFAAKQRSQDKPLILMGASAEDLWPYVEGREQD 71

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   +   +WPG LTLV+          ++  +  T   RVP     + I +   PLA
Sbjct: 72  KQIWEQVVSQYWPGALTLVVPASKRVPEV-MNPIDPTTIGIRVPKSAIAQKILSQTGPLA 130

Query: 137 IPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-----KIGLESTIVNVQCEKKVRI 191
             SAN SGQ ++  +  I       + P ++    +      IGL ST+     E   +I
Sbjct: 131 TTSANFSGQPALLTMAEI-----DAQFPTVLTLESTAVEAEGIGLPSTVAKWTGEN-WQI 184

Query: 192 LRPGGLEIE 200
           LR G + +E
Sbjct: 185 LRQGAVSLE 193


>gi|119486656|ref|ZP_01620706.1| hypothetical protein L8106_12935 [Lyngbya sp. PCC 8106]
 gi|119456273|gb|EAW37405.1| hypothetical protein L8106_12935 [Lyngbya sp. PCC 8106]
          Length = 201

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 18/199 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + L +A   +     ++ PT+TV  LAV  +       ++++K+R A  PLI   +    
Sbjct: 7   DTLVEAA--ISGDQVVSFPTDTVPALAVQPQQAE---LIFQLKQRSADKPLILMGATPES 61

Query: 70  VKKHAS--VDPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           +       V+ L +   +A+ +WPG LTLVL          ++ ++  T   R+P     
Sbjct: 62  LWPFVQGTVEELQVWSQMARQYWPGALTLVLPASEKVP-RAMNPSDPTTIGLRIPNAEIS 120

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-----GLESTI 180
           + I     PLA  SAN SGQ  +  +  I            +D G  K+      + ST+
Sbjct: 121 RAILQRTGPLATTSANLSGQPPLLTMAEIEVQF---PQVFTLDPGELKVVSEVSCVPSTV 177

Query: 181 VNVQCEKKVRILRPGGLEI 199
           +    E    ILR G + +
Sbjct: 178 IKWNREGTWNILRQGAVTV 196


>gi|330889220|gb|EGH21881.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. mori str. 301020]
          Length = 141

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27  PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCGFT 124
            +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP    
Sbjct: 87  QLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPI 141


>gi|190150467|ref|YP_001968992.1| hypothetical protein APP7_1198 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189915598|gb|ACE61850.1| hypothetical protein APP7_1198 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 204

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 12/194 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I  +   N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI 
Sbjct: 15  IYLVKKMNNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL 74

Query: 63  HVSDISMVKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACFR- 118
                 ++  +   + L+    ++F  P    +T V+   +   +    T    T   R 
Sbjct: 75  IAPTKELLLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRL 132

Query: 119 --VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
             +P      L E  G  L   S N +GQ        +       + P +++   +    
Sbjct: 133 CCIPA--VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTN 188

Query: 177 ESTIVNVQCEKKVR 190
            S I ++  +   R
Sbjct: 189 PSEIRDIFTQHIFR 202


>gi|255020863|ref|ZP_05292919.1| hypothetical protein ACA_1085 [Acidithiobacillus caldus ATCC 51756]
 gi|254969654|gb|EET27160.1| hypothetical protein ACA_1085 [Acidithiobacillus caldus ATCC 51756]
          Length = 186

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 6/182 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            LRKA   L  G  IA PTE V+GL  D R   A+R +  +KKRP    ++   +  S  
Sbjct: 10  DLRKAVALLRHGQVIAYPTEGVWGLGCDPRRRPALRHILRLKKRPQHKGVLLIAATRSQA 69

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIE 129
            + A +D +   +   +WPG  TLVL   +  +              RV      ++L  
Sbjct: 70  ARFADLDAVEEQVLGRYWPG-TTLVLP--ARKEAAAWLRGQHGGIAIRVTHHEASRRLCR 126

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
           ++G  +   SAN +G  +  +++  L       +   +   +      S I++    + +
Sbjct: 127 SFGRAIVSTSANPAGLQAARDLRT-LKRYFGARV-WALPARLGGQRRPSRIIDAVTGRIL 184

Query: 190 RI 191
           R 
Sbjct: 185 RS 186


>gi|269303145|gb|ACZ33245.1| Sua5/YciO/YrdC/YwlC family protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 286

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 85/204 (41%), Gaps = 17/204 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +    +  G  +A+PT+TVYG  +      A  RLY +K R        +V+ I  +
Sbjct: 11  SLPEVMSAIHQGKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDI 70

Query: 71  KKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +  +   + P +  LA+LF PG +TLV+        H       +T  FR+      +++
Sbjct: 71  ENISGYPLSPTAKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREI 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G  L   SAN S   S    + + +        L I  G    GLEST+V      
Sbjct: 123 VDHCGT-LIGTSANLSEFPSALTAQEVFADFADH--DLCIFDGPCSHGLESTVV---ASD 176

Query: 188 KVRILRPGGLEIETLKRAISVELE 211
            + I R G +    ++     E +
Sbjct: 177 PLYIYREGLISRSVIENIAGTEAK 200


>gi|307246055|ref|ZP_07528137.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307250396|ref|ZP_07532343.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252778|ref|ZP_07534669.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255037|ref|ZP_07536855.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259473|ref|ZP_07541198.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307263811|ref|ZP_07545417.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306852990|gb|EFM85213.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306857525|gb|EFM89634.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306859810|gb|EFM91832.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861910|gb|EFM93886.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866409|gb|EFM98272.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306870932|gb|EFN02670.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 187

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 5   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 64

Query: 70  VKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123
           +  +   + L+    ++F  P    +T V+   +   +    T    T   R   +P   
Sbjct: 65  LLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCCIPA-- 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L E  G  L   S N +GQ        +       + P +++   +     S I ++
Sbjct: 121 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPSEIRDI 178

Query: 184 QCEKKVR 190
             +   R
Sbjct: 179 FTQHIFR 185


>gi|126657314|ref|ZP_01728473.1| hypothetical protein CY0110_00105 [Cyanothece sp. CCY0110]
 gi|126621301|gb|EAZ92013.1| hypothetical protein CY0110_00105 [Cyanothece sp. CCY0110]
          Length = 199

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 76/189 (40%), Gaps = 16/189 (8%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
             G  I+ PT+TV  LA     P +   ++  KKRP   PLI   S    + K+    P 
Sbjct: 14  KEGKVISFPTDTVPALAAL---PESASLIFATKKRPPDKPLILMGSSSEAIWKYVKGTPE 70

Query: 80  SLHLAK----LFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTKKLIETYGH 133
              + +     +WPG LTLVL         I+PL  +   T   R+P     + I     
Sbjct: 71  EFRIWEKIVNKYWPGQLTLVLPASELVPQGINPLDPS---TIGVRIPNSIIAQNILKQTG 127

Query: 134 PLAIPSANRSGQISITNVKH---ILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            LA  SAN SG+  I N+     I    +     LI +      GL ST+          
Sbjct: 128 CLATTSANLSGEPPIENLSDIALIFPDVLVLNEELIKNQKKYGSGLPSTVAKWTNRG-WE 186

Query: 191 ILRPGGLEI 199
           ILR G +++
Sbjct: 187 ILRQGSIQL 195


>gi|198284016|ref|YP_002220337.1| SUA5/yciO/yrdC domain [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666682|ref|YP_002426660.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248537|gb|ACH84130.1| SUA5/yciO/yrdC domain [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518895|gb|ACK79481.1| Sua5/YciO/YrdC family protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 186

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 70/182 (38%), Gaps = 6/182 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +R+    +  G  IA PTE V+GL  D R   A+ R+  +K RP    ++      +  
Sbjct: 10  DIRRGVAHIRRGGVIAYPTEGVWGLGCDPRRRRALHRILALKGRPRFKGVLLVAGRTAET 69

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK-KLIE 129
           +++ S       L   FWPG  TLVL   +T  +             R+        L  
Sbjct: 70  RRYWSAQGTDQALLARFWPG-TTLVLP--ATPQVPFWIRGRHAGVAVRISSHPAIVALSR 126

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
            +G  +   SAN +G+    +++ +           ++   +      S IV+ +  + +
Sbjct: 127 VFGGAMVSTSANPAGKQPARDLRTLYR--YFGRSLWVLPARLGGQHHPSRIVDARSGRVL 184

Query: 190 RI 191
           R 
Sbjct: 185 RE 186


>gi|269124173|ref|YP_003306750.1| Sua5/YciO/YrdC/YwlC family protein [Streptobacillus moniliformis
           DSM 12112]
 gi|268315499|gb|ACZ01873.1| Sua5/YciO/YrdC/YwlC family protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 183

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 12/182 (6%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
            I  PT+TVYGL     N  A+ ++++IKKR     +I  VS    + K   ++ L   +
Sbjct: 5   VILFPTDTVYGLGSLP-NKKALDKIFDIKKRDRNKKIIALVSKKETINKIIEINDLIDKI 63

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
              F+PGP+TL+    ST  I  L     +    R+P      ++IE +G  L   SAN 
Sbjct: 64  IDKFFPGPITLI--AKSTPFIKELL--GYEDIGVRIPNNKMALEIIEKFGGILMTTSANI 119

Query: 143 SGQISITNVKHILSSSICKEIP--LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
           SG+ +       +   I K +    I D  +S  G+ S+I  +  E  + +LR G + + 
Sbjct: 120 SGKEAPKKYSE-IDEEILKLVDHKYIDDSNLS--GISSSIFKIDGEN-ITLLREGNISLI 175

Query: 201 TL 202
            L
Sbjct: 176 EL 177


>gi|258544687|ref|ZP_05704921.1| Sua5/YciO/YrdC/YwlC family protein [Cardiobacterium hominis ATCC
           15826]
 gi|258520105|gb|EEV88964.1| Sua5/YciO/YrdC/YwlC family protein [Cardiobacterium hominis ATCC
           15826]
          Length = 204

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 85/203 (41%), Gaps = 10/203 (4%)

Query: 2   QIMSITD----SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ I         + +  E L  G  +  P+++ Y L     + +A  ++  I++    
Sbjct: 3   EILEIHPARIKPRDIARIVETLRHGGVVIAPSDSGYALLCQLDDKSAAEKIRHIRELERD 62

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           +P     +D++ + ++A VD +   L K  +PG  T +L          +     KT   
Sbjct: 63  HPFTILCADLTDLARYARVDNVQFRLLKTLFPGAYTCILPASREVP-RRVQNDKRKTIGI 121

Query: 118 RVPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           RVP     + ++  +G  L   S   S         H L +++  ++ L++D G   +  
Sbjct: 122 RVPDHPVLQAILAEHGEALMGVSLFDSDAYDA--DIHELPAAVTGQVALMVDAGDVPL-R 178

Query: 177 ESTIVNVQCEKKVRILRPGGLEI 199
            +T++++  E    +LR G  E+
Sbjct: 179 PTTVLDLT-EMPPLLLRQGAGEV 200


>gi|240948328|ref|ZP_04752714.1| SUA5 protein, possible translation factor [Actinobacillus minor
           NM305]
 gi|240297367|gb|EER47908.1| SUA5 protein, possible translation factor [Actinobacillus minor
           NM305]
          Length = 184

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 8/186 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L +    +     +A PTE V+GL  +  +  A++ L ++KKRP    LI    D+ +
Sbjct: 2   NNLEQILAKIKQNQVVAYPTEAVFGLGCNPNSEQAVKLLLDLKKRPEEKGLILIAHDVEL 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTK 125
           ++ +     LS              +T ++   + T++    T    +   R+       
Sbjct: 62  LRPYIDESQLSETEWQRLNTLQEQAITWIMP--AKTNVPRYLTGKFNSIAVRICHTPAVV 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L E     L   SAN SG         + +     +   +++         S I ++  
Sbjct: 120 ALCEKLQSALTSTSANLSGLTPCRTYHEVYAQF--GQYFPVLEATTDGKTNPSEIRDIFT 177

Query: 186 EKKVRI 191
           +K  R 
Sbjct: 178 QKVFRA 183


>gi|148238861|ref|YP_001224248.1| translation factor [Synechococcus sp. WH 7803]
 gi|147847400|emb|CAK22951.1| Possible translation factor [Synechococcus sp. WH 7803]
          Length = 199

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 10/192 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +  ++L  G    +PT+T+  LA    +     +++ +K+RP   PLI   ++   +
Sbjct: 10  AVDQIADYLRGGGAALLPTDTLPALACTPSSA---AQIWTLKQRPQDKPLILMAAEAVEL 66

Query: 71  KKHASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
               +      +L LA+ +WPGPLTLVL        H        +   R+P C  T+ L
Sbjct: 67  LDLTTHIAKLDALPLAERYWPGPLTLVLPAAGALVNH--LNPGQDSLGMRIPACAATRSL 124

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA  SANRSG     + +   +++      L         GL ST++      
Sbjct: 125 LARSG-PLATTSANRSGAPPSCSAEQA-AAAFSGLPLLGPLPWPQPSGLASTVLKWTSPG 182

Query: 188 KVRILRPGGLEI 199
             ++LR G + +
Sbjct: 183 CWQMLRQGAVMV 194


>gi|254526812|ref|ZP_05138864.1| possible translation factor [Prochlorococcus marinus str. MIT 9202]
 gi|221538236|gb|EEE40689.1| possible translation factor [Prochlorococcus marinus str. MIT 9202]
          Length = 193

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 8/192 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L++GLPI  PT+T+  +      P     +YE KKR    PLI   S+   +  
Sbjct: 7   KSALKTLESGLPIIFPTDTLPAIGCL---PEFSNIIYEFKKRDKDKPLILMGSEHKQLID 63

Query: 73  HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           + +        ++A  +WPG LT+V+          + T+N  T   R+P  +  + +  
Sbjct: 64  YVNESAKKDYENIASKYWPGALTMVIPASERHT--TIITSNDLTLGLRIPNSYMAQSLIR 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG      V+ I       +I   I  G    G  STI+  +     R
Sbjct: 122 ETGPLLTSSANLSGFKGSITVEGISQDFPSVKILGPIPWGK-ISGKASTIIFWKKSGDWR 180

Query: 191 ILRPGGLEIETL 202
           ++R G + ++ L
Sbjct: 181 LIREGEVLVKEL 192


>gi|91070575|gb|ABE11478.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone HOT0M-7C8]
          Length = 193

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L AGLPI  PT+T+  +      P   + +YE KKR    PLI   S    +  
Sbjct: 7   KSALKTLRAGLPIIFPTDTLPAIGCL---PKFSKIIYEFKKRDRNKPLILMGSKYKQLID 63

Query: 73  HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                       +A  +WPG LT+V+   ++   + L T+   T   R+P     + +  
Sbjct: 64  FVHESAKEDFEKIASKYWPGALTMVIP--ASEHQNALLTSKDHTLGLRIPHSSIAQSLIQ 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG       + I        I   I    S  G  STI++ +     R
Sbjct: 122 ETGPLLTSSANISGFTGSITAEGIALDFPSVAILGPIPWEKS-SGKASTIISWKKIGDWR 180

Query: 191 ILRPGGLEIETL 202
           ++R G + ++ L
Sbjct: 181 LIREGEVLVQEL 192


>gi|165976566|ref|YP_001652159.1| hypothetical protein APJL_1159 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303250111|ref|ZP_07336313.1| hypothetical protein APP6_1523 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253285|ref|ZP_07339434.1| hypothetical protein APP2_0592 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248163|ref|ZP_07530191.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|212277663|sp|B0BQ80|RIMN_ACTPJ RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|212277727|sp|B3GY27|RIMN_ACTP7 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|165876667|gb|ABY69715.1| hypothetical protein APJL_1159 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302647967|gb|EFL78174.1| hypothetical protein APP2_0592 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651174|gb|EFL81328.1| hypothetical protein APP6_1523 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306855340|gb|EFM87515.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 184

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 2   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61

Query: 70  VKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123
           +  +   + L+    ++F  P    +T V+   +   +    T    T   R   +P   
Sbjct: 62  LLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCCIPA-- 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L E  G  L   S N +GQ        +       + P +++   +     S I ++
Sbjct: 118 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPSEIRDI 175

Query: 184 QCEKKVR 190
             +   R
Sbjct: 176 FTQHIFR 182


>gi|331667652|ref|ZP_08368516.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA271]
 gi|331065237|gb|EGI37132.1| Sua5/YciO/YrdC/YwlC family protein [Escherichia coli TA271]
          Length = 157

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 4/152 (2%)

Query: 45  IRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104
           + R+  I++ P  +       D+S +  ++ VD ++  L K   PG  T +L        
Sbjct: 1   MERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVP- 59

Query: 105 HPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163
             L     KT   RVP     + L+E  G P+   S    G     +    +   + K++
Sbjct: 60  RRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQV 119

Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            LII GG       +T++++  +  V ++R G
Sbjct: 120 DLIIHGGYLGQ-KPTTVIDLTDDTPV-VVREG 149


>gi|218437988|ref|YP_002376317.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424]
 gi|218170716|gb|ACK69449.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424]
          Length = 195

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 15/206 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+S T    +  A E    G  ++ PT+TV  LA           ++  KKR    PL
Sbjct: 1   MPIVSRT--ELITGAIE----GKVVSFPTDTVPALAALPPLSD---LIFLAKKRSQDKPL 51

Query: 61  ICHVSDISMVKKHA----SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I   + +  +  +         +   +A+ + PG LTLVL            T +  T  
Sbjct: 52  ILMGASVKDLWPYVMGTCEQLEIWQQIAQEYLPGALTLVLPASGLVPRSMNPT-DPTTIG 110

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            RVP     ++I     PLA  SAN SG+ ++ ++  I  +          +      GL
Sbjct: 111 IRVPQHQIAQMILAKTGPLATTSANLSGEPALLSMSAIAQTFPDVLTLNDEEKFQPASGL 170

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETL 202
            ST+V    +    +LR G + +  L
Sbjct: 171 PSTVVKWTSQG-WEVLRQGQITLTNL 195


>gi|307257194|ref|ZP_07538966.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864356|gb|EFM96267.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 184

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 12/187 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 2   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123
           +  +   + L+     + +      +T V+   +   +    T    T   R   +P   
Sbjct: 62  LLPYIDENKLTSAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCCIPA-- 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L E  G  L   S N +GQ        +       + P +++   +     S I ++
Sbjct: 118 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPSEIRDI 175

Query: 184 QCEKKVR 190
             +   R
Sbjct: 176 FTQHIFR 182


>gi|307261622|ref|ZP_07543290.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868745|gb|EFN00554.1| ribosome maturation factor rimN [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 187

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 5   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 64

Query: 70  VKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACF---RVPCGF 123
           +  +   + L+    ++F  P    +T V+   +   +    T    T      R+P   
Sbjct: 65  LLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCRIPA-- 120

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L E  G  L   S N +GQ        +       + P +++   +     S I ++
Sbjct: 121 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPSEIRDI 178

Query: 184 QCEKKVR 190
             +   R
Sbjct: 179 FTQHIFR 185


>gi|33151637|ref|NP_872990.1| hypothetical protein HD0414 [Haemophilus ducreyi 35000HP]
 gi|81423817|sp|Q7VNS3|RIMN_HAEDU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|33147858|gb|AAP95379.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
          Length = 184

 Score =  125 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 12/187 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE+V+GL  +  N  AIR+L ++K RP    LI       +
Sbjct: 2   NNLLAVIELLKQNQVVAYPTESVFGLGCNPNNEEAIRQLLQLKNRPIEKGLILVAPTKEL 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF---RVPCGF 123
           +  +     L+              +T ++ +    ++    T    T      RVP   
Sbjct: 62  LLPYIDESQLTEKHWQRFDTITEQAVTWIMPVHK--NVSHYLTGKFNTIAVRLCRVPA-- 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             KL E+ G  L   SAN +G         +         P +++         S I ++
Sbjct: 118 VVKLCESLGFALTSTSANFTGLPPCRTALEV-KQQFGDHFP-VLEAETGNRMNPSEIRDI 175

Query: 184 QCEKKVR 190
             +   R
Sbjct: 176 FTQHIFR 182


>gi|15618190|ref|NP_224475.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae CWL029]
 gi|15835805|ref|NP_300329.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae J138]
 gi|16752768|ref|NP_445036.1| Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae AR39]
 gi|4376543|gb|AAD18419.1| SuA5 Superfamily-related Protein [Chlamydophila pneumoniae CWL029]
 gi|7189407|gb|AAF38319.1| Sua5/YciO/YrdC family protein [Chlamydophila pneumoniae AR39]
 gi|8978644|dbj|BAA98480.1| SuA5 superfamily-related protein [Chlamydophila pneumoniae J138]
          Length = 286

 Score =  125 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 17/204 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +    +  G  +A+PT+TVYG  +      A  RLY +K R        +V+ I  +
Sbjct: 11  SLPEVMSAIHQGKIVALPTDTVYGFVLSLYASEAEERLYALKDREPSKAFALYVNSIEDI 70

Query: 71  KKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
           +  +   + P +  LA+LF PG +TLV+        H       +T  FR+      +++
Sbjct: 71  ENISGYPLSPTAKKLAQLF-PGAITLVVK-------HRNPRFPKETLAFRIVDHSVVREI 122

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           ++  G  L   SAN S   S    + I +        L I  G    GLEST+V      
Sbjct: 123 VDHCGT-LIGTSANLSEFPSALTAQEIFADFADH--DLCIFDGPCSHGLESTVV---ASD 176

Query: 188 KVRILRPGGLEIETLKRAISVELE 211
            + I R G +    ++     E +
Sbjct: 177 PLYIYREGLISRSVIENIAGTEAK 200


>gi|172039116|ref|YP_001805617.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142]
 gi|171700570|gb|ACB53551.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142]
          Length = 199

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 12/190 (6%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I+ PT+TV  LA     P +   ++  K+RP   PLI   S    + K+    P
Sbjct: 13  VKQGKVISFPTDTVPALAAL---PESASLIFATKQRPPDKPLILMGSSSDAIWKYVKGTP 69

Query: 79  LSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
               +     K +WPG LTLVL          ++     T   R+P     + I      
Sbjct: 70  QEFEIWEKVVKQYWPGQLTLVLPASEWVPKA-MNPLEPTTIGVRIPNSIIAQNILKQTGC 128

Query: 135 LAIPSANRSGQISITNVKHI---LSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           LA  SAN SG+  I  +  I       +     ++ +      GL ST+     +   +I
Sbjct: 129 LATTSANLSGEPPIETLSEIAANFPDVLVLNEEVLKNQKKYGSGLPSTVAKWT-DTDWKI 187

Query: 192 LRPGGLEIET 201
           LR G +++  
Sbjct: 188 LRQGSIKLTE 197


>gi|149923373|ref|ZP_01911780.1| Sua5/YciO/YrdC/YwlC family protein [Plesiocystis pacifica SIR-1]
 gi|149815787|gb|EDM75311.1| Sua5/YciO/YrdC/YwlC family protein [Plesiocystis pacifica SIR-1]
          Length = 212

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 75/195 (38%), Gaps = 6/195 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM--NPLICHVS 65
           D   L  A E L  G  I  PT+T Y       +   I  L ++K   A    PL   V 
Sbjct: 18  DPRKLSPAVEALQRGAVIIYPTDTGYAFGCALSSNKGISTLRKLKGIHAKHAKPLTMLVE 77

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            ++ + ++  +   +  + +   PGP T+VL   +T+D+             R+P     
Sbjct: 78  TLNDMGRYGVMPNTAFRVVRRLLPGPYTMVL--RATSDVPRAMKNRTGEVGMRLPDHKVC 135

Query: 126 KLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L+ E  G PL   S               L +   ++I L+IDGG       ST++   
Sbjct: 136 NLLVEHLGEPLLTGSLTPGEDSPELEDPAELEARYNRDIGLMIDGGHIWP-EPSTVLRFD 194

Query: 185 CEKKVRILRPGGLEI 199
               + +LR G  EI
Sbjct: 195 ERGDIEVLREGQGEI 209


>gi|119509584|ref|ZP_01628731.1| SUA5/yciO/yrdC-like protein [Nodularia spumigena CCY9414]
 gi|119465773|gb|EAW46663.1| SUA5/yciO/yrdC-like protein [Nodularia spumigena CCY9414]
          Length = 200

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 12/203 (5%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++ +T  + +        AGL ++ PT+TV  LA       A   ++  K+R    PLI 
Sbjct: 2   VLQMTHVSLVDLIAGA-RAGLLVSFPTDTVPALAALP--EKA-GLIFAAKQRSQDKPLIL 57

Query: 63  HVSDISMVKKHASVDP----LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
             +    +  +         +   +A   WPG LTLVL            T +  T   R
Sbjct: 58  MGASAEDLWPYVQGSENELKIWQDVANRHWPGALTLVLPASQKVPKQMNPT-DPSTIGIR 116

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGL 176
           VP     + I      LA  SAN SGQ  +  +  I      +    P   +G  S IG+
Sbjct: 117 VPQSAIAQTILAQTGALATTSANFSGQQPLLKLAEIAEQFPEVLTLEPTQFNGEFSGIGV 176

Query: 177 ESTIVNVQCEKKVRILRPGGLEI 199
            ST+      +   ILR G +++
Sbjct: 177 PSTVSKWTG-RNWEILRQGTVKL 198


>gi|123967880|ref|YP_001008738.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           AS9601]
 gi|123197990|gb|ABM69631.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           AS9601]
          Length = 193

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 8/192 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A + L +GLPI  PT+T+  +      P     +YE KKR    PLI   S+   +  
Sbjct: 7   KSALKTLKSGLPIIFPTDTLPAIGCL---PKFSNIIYEFKKRDRGKPLILMGSEHKQLID 63

Query: 73  HASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           +          ++A  +WPG LT+V+          + T+N  T   R+P  +  K +  
Sbjct: 64  YVHESAKEDYENIASKYWPGALTMVVPASEKQT--TILTSNDLTLGLRIPNSYMAKSLMR 121

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL   SAN SG      V+ I       +I   I     + G  STI+  +     R
Sbjct: 122 ETGPLLTSSANISGFKGSITVEGIALDFPSVKILGPI-PWEKRSGKASTIIFWKKSGDWR 180

Query: 191 ILRPGGLEIETL 202
           ++R G + +  L
Sbjct: 181 LIREGEVLVREL 192


>gi|328954788|ref|YP_004372121.1| SUA5/yciO/yrdC domain protein [Coriobacterium glomerans PW2]
 gi|328455112|gb|AEB06306.1| SUA5/yciO/yrdC domain protein [Coriobacterium glomerans PW2]
          Length = 233

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 17/222 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSR---NPTAI--------RRLYEIKKRPAMNP 59
           A+      L AG    IPTETVYG+AV       P A+        RR++ +K+R  +  
Sbjct: 16  AVEAGSAVLTAGGVALIPTETVYGIAVAISAFARPGAMLPDPGSGYRRIFSLKRRDLVQT 75

Query: 60  LICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           L   VS  + + +    +D  +  LA+ FWPG LTLV+D  +   +     A   T   R
Sbjct: 76  LPLLVSGPADLDRFGLDIDSQTRCLAERFWPGALTLVVD--AAERVPAFMRAADGTIALR 133

Query: 119 VPCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
                    LI+  G PLA  SAN     +  +   +    +   + + ID G +     
Sbjct: 134 ASSSPAVGDLIDACGCPLAATSANTHAMPAPASFAEVEPRILDG-VDVAIDAGPTPCADA 192

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETST 219
           ST++ +  +    +LR G L    ++ A+     +      +
Sbjct: 193 STVIRI-SDGAPMVLREGALPSRAIEDALGSRHVHLRSPKES 233


>gi|239906926|ref|YP_002953667.1| hypothetical protein DMR_22900 [Desulfovibrio magneticus RS-1]
 gi|239796792|dbj|BAH75781.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 214

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 12/193 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS- 80
           G  +  PTET + L   + N  A+ R+  +K RPA  PL   V +++ +         + 
Sbjct: 16  GGCVVYPTETYFALGALADNAAALERIVAVKGRPAHKPLPLLVGELAQLAAVVPPGFAAG 75

Query: 81  ------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGH 133
                   LA LFWPGPL+LV+       +  L          R  P      L    G 
Sbjct: 76  PLGADFGELAALFWPGPLSLVVPCREA--LPGLVKDADGRVSVRFTPHETAAALCRLAGG 133

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNVQCEKKVRIL 192
            L   SAN SG          L   +   +  ++  G     G  ST+  ++  K++ I 
Sbjct: 134 ALVATSANVSGGPPAAT-PEALDPEVTAAVDAVLTAGAPPAGGPASTVAGLRGGKRLTIF 192

Query: 193 RPGGLEIETLKRA 205
           R G   +  LK A
Sbjct: 193 RRGATPLSALKAA 205


>gi|223042141|ref|ZP_03612312.1| hypothetical protein AM202_0726 [Actinobacillus minor 202]
 gi|223017080|gb|EEF15521.1| hypothetical protein AM202_0726 [Actinobacillus minor 202]
          Length = 184

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 70/186 (37%), Gaps = 8/186 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L +    +     +A PTE V+GL  +  +  A++ L ++KKRP    LI    ++ +
Sbjct: 2   NNLEQILAKIKQNQVVAYPTEAVFGLGCNPNSEQAVKLLLDLKKRPEEKGLILIAHNLEL 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTK 125
           ++ +     LS              +T ++   + T++    T    +   R+       
Sbjct: 62  LRPYIDESQLSETEWQRLNTLQEQAITWIMP--AKTNVPRYLTGKFNSIAVRICRTPAVV 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            L E     L   SAN SG         +  +   ++ P +++         S I ++  
Sbjct: 120 ALCENLQSALTSTSANLSGLTPCRTYHEVY-AQFGQDFP-VLEATTDGKTNPSEIRDIFT 177

Query: 186 EKKVRI 191
           +K  R 
Sbjct: 178 QKVFRA 183


>gi|167855860|ref|ZP_02478611.1| hypothetical protein HPS_11182 [Haemophilus parasuis 29755]
 gi|167853010|gb|EDS24273.1| hypothetical protein HPS_11182 [Haemophilus parasuis 29755]
          Length = 184

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +  +  + L     IA PTE V+GL  + ++  A+R L ++K RP    LI    +  ++
Sbjct: 3   SFNQLIDKLKQNQVIAYPTEAVFGLGCNPQSEQAVRSLLQLKNRPEEKGLILIAHNKKLL 62

Query: 71  KKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
             +     L+       +      +T ++   +T  +         T   R        +
Sbjct: 63  LPYIDDTHLTEVEWQRFETLGEQAITWIMPAKAT--VPRYLKGQFDTIAVRLCQVPAVVE 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L    G  L   SAN +          +      K  P ++D         S I ++  +
Sbjct: 121 LCTATGFALTSTSANLTTLPPCLTADEV-RQQFGKSFP-VLDQATGGKSNPSEIRDIFSQ 178

Query: 187 KKVR 190
              R
Sbjct: 179 HIFR 182


>gi|262374665|ref|ZP_06067938.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262310455|gb|EEY91546.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 189

 Score =  124 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +N++ +A + L  G  +A PTE V+GL  D  N  A + + E+K RP    +I     + 
Sbjct: 3   TNSIAEAADCLKQGQVLAYPTEAVWGLGCDPFNQQAFQDILELKHRPVEKGVILLAGHLE 62

Query: 69  MVKKHASVDPLSLH-LAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+        SL       W          T +L   +   I             RV  
Sbjct: 63  QVEHLLQNLESSLRNQVIASWSNRQETERATTWLLP--ADQHIPTWIKGQHSLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +L + +G  +   SAN +G     +++     +        +DG +      S I
Sbjct: 121 HPLCVELCDLFGGFIVSTSANPAGLTPAKSLEEA--QAYFGSSLHYLDGKLGLSQEPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + +R 
Sbjct: 179 LNALTGEVIRA 189


>gi|118497072|ref|YP_898122.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           novicida U112]
 gi|134301787|ref|YP_001121755.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931331|ref|YP_001891315.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194324308|ref|ZP_03058082.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|118422978|gb|ABK89368.1| Sua5/YciO/YrdC family protein [Francisella novicida U112]
 gi|134049564|gb|ABO46635.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187712240|gb|ACD30537.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194321755|gb|EDX19239.1| Sua5/YciO/YrdC/YwlC family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 204

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 4/195 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D
Sbjct: 12  NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +S + ++A VD  +  L K + PGP T +L+         L T +  T   RV   +  +
Sbjct: 72  LSEISEYAKVDNNAYRLLKRYTPGPYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130

Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            I    G PL I S    G   +      + S I   +  +++         +T+V +  
Sbjct: 131 AISAEIGEPLVISSFIVPGHQHVVTDCDEVDSQIMNYLDAVVESDYCGYD-PTTVVELL- 188

Query: 186 EKKVRILRPGGLEIE 200
           E   +ILR G  EI+
Sbjct: 189 ELPYQILRQGAGEID 203


>gi|326201500|ref|ZP_08191371.1| SUA5/yciO/yrdC domain [Clostridium papyrosolvens DSM 2782]
 gi|325988100|gb|EGD48925.1| SUA5/yciO/yrdC domain [Clostridium papyrosolvens DSM 2782]
          Length = 214

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           + A E +  G  I +PT+ VY +  D+ N  A+ RL EI+K P   PL   + D   + K
Sbjct: 13  KLAGEAIKRGKVIVVPTDAVYAVVCDAFNKEAVERLREIRKSPQDKPLSLII-DKKDIDK 71

Query: 73  HASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
           +  +   +   +     PG ++ +++     DI   +  N    C       TK + E  
Sbjct: 72  YCHIKNETYKSIIDALLPGKVSFLIN--KKGDIFTDAVPNSDAICVFWQDNETKDVYEES 129

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G  LAI SAN++G    T ++  +S     E+ L ID G  +    +T ++++ +    +
Sbjct: 130 GTVLAISSANKAGFPEATTLEQAIS-FFEDEVELFIDSGEERGNKGTTQLDIRNDSISIM 188

Query: 192 LRPGGLEIETLKRAISVE 209
                  +  + + +  +
Sbjct: 189 RESPMFPLVEINKVLDAK 206


>gi|262198093|ref|YP_003269302.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365]
 gi|262081440|gb|ACY17409.1| Sua5/YciO/YrdC/YwlC family protein [Haliangium ochraceum DSM 14365]
          Length = 205

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 15/199 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +A + L  G  + +PTET YGLAVD  NP A+R L ++K+RPA  P    + +  
Sbjct: 5   ERDVDRAVDILRTGGIVCMPTETTYGLAVDIDNPAALRALAQLKQRPADAPFGLVLGERG 64

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPCGFT 124
            + +  A   PL+  +A+  WPG LTLV+          I P     ++ +  RVP    
Sbjct: 65  HIHQLTALWPPLAEDMARACWPGALTLVVPARPELPGELIGPGGGVGVRLSSHRVPTALA 124

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             L    G  +   SAN SG  +  ++      +   +    +DGG +     ST+V ++
Sbjct: 125 AAL----GRAITATSANPSGAPAACDIARA--RAYFGDAVHYLDGGPATPA-ASTVVAIE 177

Query: 185 CEK----KVRILRPGGLEI 199
            +     + R+LR G +++
Sbjct: 178 DQGDGQARARLLRAGPVDV 196


>gi|219871360|ref|YP_002475735.1| SUA5 protein, putative translation factor [Haemophilus parasuis
           SH0165]
 gi|219691564|gb|ACL32787.1| SUA5 protein, possible translation factor [Haemophilus parasuis
           SH0165]
          Length = 184

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 8/184 (4%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +  +  E L     IA PTE V+GL  + ++  A+R L ++K RP    LI       ++
Sbjct: 3   SFNQLIEKLKQNQVIAYPTEAVFGLGCNPQSEQAVRSLLQLKNRPEDKGLILIAHHKELL 62

Query: 71  KKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKK 126
             +     L+       +      +T ++   +T  +        +T   R        +
Sbjct: 63  LPYIDDTHLTEVEWQRFETLGEQAITWIMPAKAT--VPRYLKGQFETIAVRLCQVPAVVE 120

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L    G  L   SAN +          +         P ++D         S I ++  +
Sbjct: 121 LCTATGFALTSTSANLTTLPPCRTADEV-RQQFGNSFP-VLDQATGGKSNPSEIRDIFSQ 178

Query: 187 KKVR 190
              R
Sbjct: 179 HIFR 182


>gi|170077858|ref|YP_001734496.1| YrdC domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169885527|gb|ACA99240.1| yrdC domain protein [Synechococcus sp. PCC 7002]
          Length = 197

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 20/203 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +T +  + +A    + G  ++ PT+TV  LA     P A   +Y++K+R    PLI   +
Sbjct: 4   VTAAALVDRA----NNGQVVSFPTDTVPALAAQ---PDAAPLIYQLKRRSPDKPLILMTA 56

Query: 66  DISMVKKHASVDPLS----LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            +  +  +             +A+ +WPG LTLVL            T N  T   RVP 
Sbjct: 57  SLPEIWDYVVGSETEKAQWQAIAQQYWPGALTLVLPASEKVSAAMNPT-NSGTIGVRVPD 115

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-----GL 176
               + I     PLA  SANRSG   +  +  I       EIP++      +      G 
Sbjct: 116 LALAQGILRETGPLATTSANRSGSDPLEWMAAIAKEF--PEIPVLDCTTQERTSKIGSGQ 173

Query: 177 ESTIVNVQCEKKVRILRPGGLEI 199
            ST+         RILR G + +
Sbjct: 174 PSTVAQWTGSG-WRILRQGAVSL 195


>gi|56708352|ref|YP_170248.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670822|ref|YP_667379.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457478|ref|ZP_03665951.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370974|ref|ZP_04986977.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875175|ref|ZP_05247885.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604844|emb|CAG45926.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321155|emb|CAL09309.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569215|gb|EDN34869.1| hypothetical protein FTBG_01595 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841174|gb|EET19610.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159967|gb|ADA79358.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 204

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 4/195 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D
Sbjct: 12  NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +S + ++A VD  +  L K + PGP T +L+         L T +  T   RV   +  +
Sbjct: 72  LSEISEYAKVDNNAYRLLKRYTPGPYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130

Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            I    G PL I S    G   +      + S I   +  +++         +T+V +  
Sbjct: 131 AISAEIGEPLVISSFIVPGHQYVVTDCDEVDSQIMNYLDAVVESDYCGYD-PTTVVELL- 188

Query: 186 EKKVRILRPGGLEIE 200
           E   +ILR G  EI+
Sbjct: 189 ELPYQILRQGAGEID 203


>gi|186683986|ref|YP_001867182.1| SUA5/yciO/yrdC domain-containing protein [Nostoc punctiforme PCC
           73102]
 gi|186466438|gb|ACC82239.1| SUA5/yciO/yrdC, N-terminal domain protein [Nostoc punctiforme PCC
           73102]
          Length = 225

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 11/187 (5%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
            AGL ++ PT+TV  LA       A   ++  K+R    PLI   +    +  +      
Sbjct: 37  RAGLLVSFPTDTVPALAAIP--EKA-GLIFAAKQRSQDKPLILMAASAEDLWLYVKGSEN 93

Query: 80  SLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
                  L    WPG LTLVL          ++  +  T   RVP     + I     PL
Sbjct: 94  EYKVWQELVGKHWPGGLTLVLPASERLPKV-MNPIDPTTIGIRVPNSAIARTILAQTGPL 152

Query: 136 AIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           A  SAN SGQ  +  +  I +    +         G  + +G+ ST+         +ILR
Sbjct: 153 ATTSANFSGQPPLQTMAEIETQFPQVLTLATTECQGETAAMGIPSTVAKWTG-INWQILR 211

Query: 194 PGGLEIE 200
            G ++++
Sbjct: 212 QGAIKLD 218


>gi|119715316|ref|YP_922281.1| translation factor SUA5 [Nocardioides sp. JS614]
 gi|119535977|gb|ABL80594.1| translation factor SUA5 [Nocardioides sp. JS614]
          Length = 208

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 4/198 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S  L +  + L     IA PT++ Y L     N     R+  I++    +       D +
Sbjct: 14  SRLLDQIADALREDQLIAYPTDSGYALGCRLGNREGRDRILRIRRLDEKHHFTLMCKDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKL 127
            +     +D  +    K   PGP T +L          L     +T   R+P     + L
Sbjct: 74  QLGHFVKLDNSAFRSIKAATPGPYTFILPATQEVP-RRLMHPKKRTVGVRIPAHVFDQAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           + T G  L   +    G+    ++   +   +  ++ ++++ G + +   +T+++   E 
Sbjct: 133 LGTLGEALLTSTLILPGETEPRSLGWEIKEELDHQVDVVVEAGET-LAEPTTVIDW-SEG 190

Query: 188 KVRILRPGGLEIETLKRA 205
              +LR G  +    + A
Sbjct: 191 YPEVLRVGAGDPARFEAA 208


>gi|254523713|ref|ZP_05135768.1| Sua5/YciO/YrdC family protein [Stenotrophomonas sp. SKA14]
 gi|219721304|gb|EED39829.1| Sua5/YciO/YrdC family protein [Stenotrophomonas sp. SKA14]
          Length = 169

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 7/171 (4%)

Query: 25  IAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS---VDPLSL 81
           IA PTE V+GL  D  +  A+  +  +K+RP    +I   +++  ++       +     
Sbjct: 2   IAYPTEAVWGLGCDPSHEAAVHMVLRLKQRPIEKGMILVAAELPQLEGWVRLQALPDARQ 61

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
                 WPG  T +L         P  T        R+        L   +G PL   SA
Sbjct: 62  RAVLASWPGANTWILPAGPRAQ--PWVTGEHSGIAVRISAHPLVAALCRAWGGPLVSTSA 119

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           N +G+    + +  L   + + +  I+DG    +   + I +      +R 
Sbjct: 120 NLAGEPPARS-REELDPRLLRLLDGILDGQTGGLAQPTPIRDALSGNVLRS 169


>gi|208780526|ref|ZP_03247866.1| Sua5/YciO/YrdC/YwlC family protein [Francisella novicida FTG]
 gi|254372431|ref|ZP_04987921.1| hypothetical protein FTCG_01656 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570159|gb|EDN35813.1| hypothetical protein FTCG_01656 [Francisella novicida GA99-3549]
 gi|208743672|gb|EDZ89976.1| Sua5/YciO/YrdC/YwlC family protein [Francisella novicida FTG]
          Length = 204

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 4/195 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D
Sbjct: 12  NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +S + ++A VD  +  L K + PGP T +L+         L T +  T   RV   +  +
Sbjct: 72  LSEISEYAKVDNNAYRLLKRYTPGPYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130

Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            I    G PL I S    G   +      + S I   +  +++         +T+V +  
Sbjct: 131 AISAEIGEPLVISSFIVPGHQHVVTDCAEVDSQIMNYLDAVVESDYCGYD-PTTVVELL- 188

Query: 186 EKKVRILRPGGLEIE 200
           E   +ILR G  EI+
Sbjct: 189 ELPYQILRQGAGEID 203


>gi|241667154|ref|ZP_04754732.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875707|ref|ZP_05248417.1| Sua5/YciO/YrdC/YwlC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841728|gb|EET20142.1| Sua5/YciO/YrdC/YwlC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 204

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 4/191 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++    LD+   +A+PT++ Y LA   ++  AI ++ +I++    +       D+S +
Sbjct: 16  ELKEIANILDSDGVLAVPTDSGYALACRMKSKKAIDKIIKIRELDGKHNFTLSCKDLSEI 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++A VD  +  + K + PGP T +L+         L T +  T   RV   +  + I  
Sbjct: 76  SEYAKVDNSAYRILKRYTPGPFTFILNATKKVS-SLLVTKSKNTVGIRVSEHYALQAISA 134

Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL I S    GQ  +     ++   +   I ++I+      G EST V    E   
Sbjct: 135 EIGEPLVIGSFILPGQDHVVTDCSVIDDEVMNYIDVVIESDYC--GYESTTVVEMLELPY 192

Query: 190 RILRPGGLEIE 200
           +ILR G  EI+
Sbjct: 193 QILRQGAGEID 203


>gi|167626597|ref|YP_001677097.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596598|gb|ABZ86596.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 204

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 4/191 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            L++    LD    +A+PT++ Y LA   ++  AI ++ +I++    +       D+S +
Sbjct: 16  ELKEIANVLDNDGVLAVPTDSGYALACRMKSKKAIDKIIKIRELDGKHNFTLSCKDLSEI 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
            ++A VD  +  + K + PGP T +L+         L T +  T   RV   +  + I  
Sbjct: 76  SEYAKVDNSAYRILKRYTPGPFTFILNATKKVS-SLLVTKSKNTVGIRVSEHYALQAISA 134

Query: 131 -YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL I S    GQ  +     ++   +   I ++I+      G EST V    E   
Sbjct: 135 EIGEPLVIGSFILPGQDHVVTDCSVIDDEVMNYIDVVIESDYC--GYESTTVVEMLELPY 192

Query: 190 RILRPGGLEIE 200
           +ILR G  EI+
Sbjct: 193 QILRQGAGEID 203


>gi|88807794|ref|ZP_01123305.1| hypothetical protein WH7805_06526 [Synechococcus sp. WH 7805]
 gi|88787833|gb|EAR18989.1| hypothetical protein WH7805_06526 [Synechococcus sp. WH 7805]
          Length = 207

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 14/206 (6%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
            Q M++T  +    A+ +    L  G    +PT+T+  LA    +     +++ +K+RP 
Sbjct: 4   FQAMAMTPLDGQLMAVEEIAGHLCGGGAALLPTDTLPALACTPSSA---AQIWTLKQRPQ 60

Query: 57  MNPLICHVSDISMVKKHASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
             PLI   +++S +    +V     +  LA  +WPGPLTLVL    T   H        T
Sbjct: 61  DKPLILMAAEVSALLDLTTVIAREDARPLADRYWPGPLTLVLPAEGTLTNH--LNPGQDT 118

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              R+P C  T+ L+   G PLA  SANRSG    +      +++      L        
Sbjct: 119 LGMRIPACAVTRSLLARCG-PLATTSANRSGGT-PSCSAEQAAAAFPALPLLAPLPWPQP 176

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEI 199
            GL ST++        + LR G + I
Sbjct: 177 SGLASTVLKWISPGCWQTLRQGAVMI 202


>gi|300871115|ref|YP_003785987.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira pilosicoli 95/1000]
 gi|300688815|gb|ADK31486.1| Sua5/YciO/YrdC/YwlC family protein [Brachyspira pilosicoli 95/1000]
          Length = 196

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 5/180 (2%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           A+ +  + ++ G  +  PT+TVYG+  D+ N  AI R+Y IK+R    PL+  + D   +
Sbjct: 16  AVEEVAKVINNGGVVISPTDTVYGMLADAFNVDAINRIYSIKEREREKPLLILLKDSKFI 75

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
                 +     + K   PG LT ++ L        L   N  T   R+P     + +  
Sbjct: 76  NILCEGN--IPDIVKAKIPGELTFIMPLKEIIKKDFLYLKN--TVALRIPKDDYMEKLLK 131

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              PL  PSAN +G   I +   ++      ++ LI++ G  +  L ST+ +    K +R
Sbjct: 132 LTPPLVAPSANPTGYGVIYDGNKLV-ELYKDKVDLIVNCGTIEKKLPSTLYDCINNKVLR 190


>gi|297283021|ref|XP_002802371.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like,
           partial [Macaca mulatta]
          Length = 268

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 16/197 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ALR A   L AG  +A+PT+T+YGLA  +    A+R +Y +K R    PL   +  ++
Sbjct: 56  TEALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVA 115

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            V ++  V  +   L K   PGP+TLV++   + +++            R+P   F + L
Sbjct: 116 DVYRYCRVR-VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDL 172

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI--------IDGGISKIGLEST 179
            + +  PLA+ SAN S Q S  NV+      +  ++ L+              ++G  ST
Sbjct: 173 AQMFEGPLALTSANLSSQASSLNVEE--FRDLWPQLSLVIDGGQIGGGQSPECRLG--ST 228

Query: 180 IVNVQCEKKVRILRPGG 196
           +V++    K  I+RPG 
Sbjct: 229 VVDLSVPGKFGIIRPGC 245


>gi|332705341|ref|ZP_08425419.1| putative translation factor SUA5 [Lyngbya majuscula 3L]
 gi|332355701|gb|EGJ35163.1| putative translation factor SUA5 [Lyngbya majuscula 3L]
          Length = 201

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 12/188 (6%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS 80
           +G  ++ PT+TV  LAV       +   +E K+RP   PLI   +    +          
Sbjct: 15  SGKLVSFPTDTVPALAVLPHKSELV---FEAKRRPQDKPLILMGASPKSLWPFVQGTSAQ 71

Query: 81  L----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
                H+A  +WPG LTLVL          ++ ++  T   RVP       I +   PLA
Sbjct: 72  RSIWEHMAVKYWPGALTLVLPASDKVPTV-MNPSDPTTIGVRVPASRIAIAILSKTGPLA 130

Query: 137 IPSANRSGQISITNVK--HILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
             SAN SG+  +  +    +    +    P  ++     KIG+ ST+          ILR
Sbjct: 131 TTSANYSGEPPLQTMAAVEVQFPEVLTLQPAELEAIKPDKIGVPSTVAKWTSSG-WEILR 189

Query: 194 PGGLEIET 201
            GG+E++ 
Sbjct: 190 AGGIELDD 197


>gi|282899092|ref|ZP_06307073.1| SUA5/yciO/yrdC-like protein [Cylindrospermopsis raciborskii CS-505]
 gi|281196008|gb|EFA70924.1| SUA5/yciO/yrdC-like protein [Cylindrospermopsis raciborskii CS-505]
          Length = 190

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 15/198 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M+I+    +R A      G  I+ PT+TV G+A           +Y  K+R    PLI  
Sbjct: 1   MNISLDRLIRGA----KEGKIISFPTDTVPGMATIPTKAE---LIYIAKQRSLDKPLILM 53

Query: 64  VSDISMVKKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            ++   + ++         +       +WPG LTLVL              +  T   RV
Sbjct: 54  GAEPESLWEYVKGSDQEYEIWQEVVNRYWPGALTLVLPASDKVPRVMNPQ-DPTTIGIRV 112

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P     + I     P+A  S N SG+  +     I           +I+     +G+ ST
Sbjct: 113 PNHPIARAILAQTGPMATTSVNLSGKPPLETQAEIAGEFPDVLTEELIE--YKGLGVPST 170

Query: 180 IVNVQCEKKVRILRPGGL 197
           +     E   +ILR G +
Sbjct: 171 VAKWT-ENHWQILRQGSI 187


>gi|254421677|ref|ZP_05035395.1| hypothetical protein S7335_1827 [Synechococcus sp. PCC 7335]
 gi|196189166|gb|EDX84130.1| hypothetical protein S7335_1827 [Synechococcus sp. PCC 7335]
          Length = 241

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%)

Query: 11  ALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +L +  + L      ++ PT+TV  LA           ++  K+RP   PLI   + +  
Sbjct: 48  SLDQMIQALKTRPALVSFPTDTVPALAAAPSQAD---LIFAAKQRPPEKPLILMGASLGD 104

Query: 70  VKKHASVDPLSLH----LAKLFWPGPLTLVLDL--LSTTDIHPLSTANL-KTACFRVPCG 122
           +  + S    ++     +A+ +WPG LTLVL    L+  +++P  T     T   RVP  
Sbjct: 105 LLPYVSGQDSAMAAWQSIAEQYWPGQLTLVLPASDLAPKNLNPHPTDQTAGTLGIRVPDH 164

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK--IGLESTI 180
                + +   PLA  SAN SGQ ++T +   ++      + L  +   SK   G+ ST+
Sbjct: 165 PVALALLSQTGPLATTSANLSGQPALTEIS-AIAQMFPSALTLGPEDYQSKAASGMPSTV 223

Query: 181 VNVQCEKKVRILRPGGLEI 199
                    +ILR G +++
Sbjct: 224 AKWTSHG-WQILRQGKIQL 241


>gi|218439515|ref|YP_002377844.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424]
 gi|218172243|gb|ACK70976.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7424]
          Length = 212

 Score =  122 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 6/197 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N +R+  +FL+AG  I +PT+  Y L   +  P AI ++ ++K   +  PLI   ++   
Sbjct: 11  NLVREIEDFLEAGEVIILPTDISYILVAHAFKPRAIAKIAQLKGWNSPQPLILL-TNRKK 69

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           V++   V P S  L   F P P+TL++    +  I    TA   +     P  F   L++
Sbjct: 70  VEEFGVVSPASGKLIDHF-PYPITLIIPKKKS--IPDSITAQHSSLFIACPDQFIYDLVD 126

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
               P+   +A  S        +  +      ++PLI+DGG  K   + T+++   E   
Sbjct: 127 QISFPMVCTTAGFSADYKARRYRTAI-QLFEGQVPLIVDGGDCKYDSKGTLIDCTLETP- 184

Query: 190 RILRPGGLEIETLKRAI 206
            IL  G + ++ L+  +
Sbjct: 185 TILNFGTVSVDDLREIL 201


>gi|282897709|ref|ZP_06305708.1| SUA5/yciO/yrdC-like protein [Raphidiopsis brookii D9]
 gi|281197388|gb|EFA72285.1| SUA5/yciO/yrdC-like protein [Raphidiopsis brookii D9]
          Length = 190

 Score =  122 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 11/193 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L +       G  I+ PT+TV G+A           +Y  K+R    PLI   ++   +
Sbjct: 4   SLDRLVRGAKEGKIISFPTDTVPGMATIPTKAE---LIYVAKQRSLDKPLILMGAEPESL 60

Query: 71  KKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
            ++         +       +WPG LTLVL              +  T   RVP     +
Sbjct: 61  WEYVKGSDQEYEIWQEVVNRYWPGALTLVLPASDKVPRVMNPQ-DPTTIGIRVPNHPIAR 119

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
            I     P+A  S N SG+  +     I           +I+     +G+ ST+     E
Sbjct: 120 AILAQTGPMATTSVNLSGKPPLETQAEIAVEFPDVLTEELIE--YKGLGVPSTVAKWT-E 176

Query: 187 KKVRILRPGGLEI 199
              +ILR G + I
Sbjct: 177 NHWQILRQGSIII 189


>gi|163783730|ref|ZP_02178716.1| hypothetical protein HG1285_01498 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880976|gb|EDP74494.1| hypothetical protein HG1285_01498 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 209

 Score =  122 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 12/201 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +D  ++  A   L  G  I  PT+T+YG+  D+ N  ++  L  + +RP+  P I  + D
Sbjct: 12  SDPESVPLAVRSLGKGEFIVAPTDTIYGILADALNYNSVAGLKRL-RRPSGRPFIVLIPD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           +S V K   ++    +L  L  PG +T+V      T ++      + +   R P  GF  
Sbjct: 71  LSWVAKLG-LEARKENLKLLSLPG-ITVVF--RKKTGLYHWL--GVDSLAVRYPRRGFIY 124

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L++ YG PL  PSAN  G     +V   +       + L +DGG  + G  STI+    
Sbjct: 125 RLLKRYGKPLVAPSANPEGLPPARDVGEAMG-YFGDAVSLYVDGGRIE-GTPSTIIKA-- 180

Query: 186 EKKVRILRPGGLEIETLKRAI 206
           E+K+ ++R G L  + L+R +
Sbjct: 181 EEKLEVIRRGSLSPDNLRRLL 201


>gi|296532236|ref|ZP_06894982.1| Sua5/YciO/YrdC/YwlC family protein [Roseomonas cervicalis ATCC
           49957]
 gi|296267433|gb|EFH13312.1| Sua5/YciO/YrdC/YwlC family protein [Roseomonas cervicalis ATCC
           49957]
          Length = 127

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/118 (40%), Positives = 59/118 (50%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
              A+ +A   L AG  +A PTETVYGL  D+RN  A+  +Y  K RP  NPLI H S+ 
Sbjct: 10  PPPAVEQAAALLRAGRLVAFPTETVYGLGADARNDAAVAAIYAAKGRPRFNPLISHFSES 69

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
                    D  +  LA  FWPGPLTLVL     + I  L+ A L +   RVP     
Sbjct: 70  GAAFAEVVEDDRARALAARFWPGPLTLVLPRSPGSRISELAAAGLPSLAVRVPAHPLA 127


>gi|78778710|ref|YP_396822.1| hypothetical protein PMT9312_0325 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712209|gb|ABB49386.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 193

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 13/202 (6%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M++ DS   + A + L +GLPI  PT+T+  +      P     +Y+ KKR    PLI  
Sbjct: 1   MNLVDS---KSALKTLTSGLPIIFPTDTLPAIGCL---PKFSNIIYDYKKRDRNKPLILM 54

Query: 64  VSDISMVKKHASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            S+   +  +          ++A  +WPG LT+V+          + T+   T   R+P 
Sbjct: 55  GSEYKQLIDYVHESAKEDYENIASKYWPGALTMVIPSSEKQT--GILTSKDLTLGLRIPN 112

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L++  G PL   SAN SG         I       EI   I    S  G  STI
Sbjct: 113 FHMAQSLLKETG-PLLTSSANISGLTGSITADGIALDFPSVEILEPIPWEKS-SGKASTI 170

Query: 181 VNVQCEKKVRILRPGGLEIETL 202
           +  +     R++R G + +  L
Sbjct: 171 IFWKKSGDWRLIREGEVLVREL 192


>gi|309811111|ref|ZP_07704908.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185]
 gi|308434899|gb|EFP58734.1| Sua5/YciO/YrdC/YwlC family protein [Dermacoccus sp. Ellin185]
          Length = 207

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 71/196 (36%), Gaps = 4/196 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              +R+  + L  G  IA PT + + L     N     R+  I+   A +       D +
Sbjct: 14  PRTVRQVVDALRDGALIAYPTSSGFALGCALGNAEGKERMVRIRHLDAKHDFTLVCEDFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   ++  +    K   PGP T +L   +      L     KT   R+      + +
Sbjct: 74  QLGQLVQLNNAAFRAIKASTPGPYTFILPATAEVP-RKLVHPKKKTVGVRLDDHPIARAI 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   S     Q         +  ++  E+ ++ID    +    +++++   + 
Sbjct: 133 VAELGEPLLSTSLILPDQDEPFTYGWAVKDALDHEVDIVIDADEVEP-RPTSVIDYT-DA 190

Query: 188 KVRILRPGGLEIETLK 203
              +LR G  ++   +
Sbjct: 191 APTVLRVGAGDVARFE 206


>gi|219557202|ref|ZP_03536278.1| hypothetical protein MtubT1_07815 [Mycobacterium tuberculosis T17]
          Length = 193

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 16/196 (8%)

Query: 20  DAGLPIAIPTETVYGLAVDSRN---PTAIRRLYEIKKRP--AMNPLICHVSDISMVKKHA 74
             G  + +PT+TVYG+A    +   P   R      +R   A+ P+   V     ++   
Sbjct: 2   QGGPLVVMPTDTVYGIARRFDSSRWPRCCR------QRGGVAICPVGVLVGSWHTIEGLV 55

Query: 75  -SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            S+   +  L + FWPG L+LV+    +            T   R+P       +     
Sbjct: 56  YSMPDGARELIRAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIELLREVG 113

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           P+A+ SAN SG     + +    S +   + + +D G S+    STIV++      R+LR
Sbjct: 114 PMAVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLR 171

Query: 194 PGGLEIETLKRAISVE 209
            G +  E +   + V+
Sbjct: 172 QGPVSTERIAEVLGVD 187


>gi|218201509|gb|EEC83936.1| hypothetical protein OsI_30017 [Oryza sativa Indica Group]
          Length = 314

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 17/205 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  L    E ++ G    IPT+TVY +  D  N  ++ RL  IK      PL      +
Sbjct: 87  DAWKLEPVVELINRGAVGIIPTDTVYSIVCDLSNNDSVERLRRIKGIGDSKPLSILCRSL 146

Query: 68  SMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTA------NLK 113
             +  + +  P              K   PGP T +L          +           +
Sbjct: 147 RDIDTYTTGFPRGTNQGQANIFRAVKRVIPGPYTFILPATKELPKQCIRHGSSTRYAKRR 206

Query: 114 TACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGI 171
               R+P     + +++    PL   S     +        I++    ++ +  I+DGG 
Sbjct: 207 QVGVRLPDDPICEAILQNLDEPLICTSVKSLSEDEWILDPVIIADIYEQQGLDFIVDGG- 265

Query: 172 SKIGLESTIVNVQCEKKVRILRPGG 196
           ++I   ST+V++       I +  G
Sbjct: 266 TRIADPSTVVDMTGSYPTIIRQGKG 290


>gi|115477475|ref|NP_001062333.1| Os08g0531300 [Oryza sativa Japonica Group]
 gi|42407889|dbj|BAD09030.1| translation factor-like [Oryza sativa Japonica Group]
 gi|42761369|dbj|BAD11637.1| translation factor-like [Oryza sativa Japonica Group]
 gi|113624302|dbj|BAF24247.1| Os08g0531300 [Oryza sativa Japonica Group]
 gi|222640922|gb|EEE69054.1| hypothetical protein OsJ_28055 [Oryza sativa Japonica Group]
          Length = 313

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 17/205 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D+  L    E ++ G    IPT+TVY +  D  N  ++ RL  IK      PL      +
Sbjct: 86  DAWKLEPVVELINRGAVGIIPTDTVYSIVCDLSNNDSVERLRRIKGIGDSKPLSILCRSL 145

Query: 68  SMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTA------NLK 113
             +  + +  P              K   PGP T +L          +           +
Sbjct: 146 RDIDTYTTGFPRGTNQGQANIFRAVKRVIPGPYTFILPATKELPKQCIRHGSSTRYAKRR 205

Query: 114 TACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGI 171
               R+P     + +++    PL   S     +        I++    ++ +  I+DGG 
Sbjct: 206 QVGVRLPDDPICEAILQNLDEPLICTSVKSLSEDEWILDPVIIADIYEQQGLDFIVDGG- 264

Query: 172 SKIGLESTIVNVQCEKKVRILRPGG 196
           ++I   ST+V++       I +  G
Sbjct: 265 TRIADPSTVVDMTGSYPTIIRQGKG 289


>gi|322515024|ref|ZP_08068033.1| translation factor [Actinobacillus ureae ATCC 25976]
 gi|322118975|gb|EFX91148.1| translation factor [Actinobacillus ureae ATCC 25976]
          Length = 184

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 8/185 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  +  A+R L ++KKRP    LI       +
Sbjct: 2   NNLENIVEQLKQNNVVAYPTEAVFGLGCNPNSEAAVRALLKLKKRPEEKGLILIAPTKEL 61

Query: 70  VKKHASVDPLS---LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTK 125
           +  +     L+     + +      +T V+   +   +    T    T   R        
Sbjct: 62  LLPYIDESKLTADHWQIFETSSEQAITWVMP--AKKGVPQYLTGQFDTIAVRLCRVSAVV 119

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           +L E  G  L   S N +GQ      + +       + P +++         S I ++  
Sbjct: 120 ELCERIGFALTSTSCNLTGQEPCRTAEEV-KLQFGTDFP-VLEADTGGKINPSGIRDIFT 177

Query: 186 EKKVR 190
           +   R
Sbjct: 178 QHIFR 182


>gi|33239812|ref|NP_874754.1| putative translation factor (SUA5) [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237338|gb|AAP99406.1| Putative translation factor (SUA5) [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 195

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 10/193 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  ++LD G P+ IPT+T+  LA   +N  AI  L+ IKKRP   PLI   S    + K
Sbjct: 9   KELLQYLDKGSPVLIPTDTLPALATFPKN--AIE-LWNIKKRPKSKPLILMGSTTDQLLK 65

Query: 73  HASVDPL--SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
           +     +  ++ +   +WPG LT+VL   ++ +I      +  +   R+P C  +   + 
Sbjct: 66  YVLPVAIKDAIRMCSSYWPGALTIVLP--ASGEIVQSLNPSGDSIGIRIPACEVSMDFLN 123

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA  SAN SGQ +     + LS    K   L      +  GL ST++  +   K 
Sbjct: 124 KSG-PLATTSANLSGQET-LIDPYELSQCFPKLPLLSPVPWPTSSGLASTLIKWKSPGKW 181

Query: 190 RILRPGGLEIETL 202
           ++LR G +  + L
Sbjct: 182 QLLRRGAVIPKEL 194


>gi|293337061|ref|NP_001168939.1| hypothetical protein LOC100382753 [Zea mays]
 gi|223973863|gb|ACN31119.1| unknown [Zea mays]
          Length = 306

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 17/205 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    + ++ G    IPT+TVY +  D  N  +I RL  +K      PL      +  + 
Sbjct: 82  LDPIIDLINRGAVGVIPTDTVYSVVCDLSNNESIERLRRLKGIGDSKPLSILCRSLRDID 141

Query: 72  KHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLST------ANLKTACF 117
            + +  P            + K   PGP T +L          +        A  +    
Sbjct: 142 TYTTGFPQGTNQGQANIFRVVKRAIPGPYTFILPASKQFPKQCIKHGSSTRYAKRRQVGV 201

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175
           R+P     + +++    PL   S     +        I++       +  I+DGG  +I 
Sbjct: 202 RIPDDPICQAILQNLDEPLICTSVKYLSEDEWILDPVIIADLYEPLGLDFIVDGGP-RIA 260

Query: 176 LESTIVNVQCEKKVRILRPGGLEIE 200
             ST+V++       I +  GL+++
Sbjct: 261 DPSTVVDMMGANPTVIRQGKGLKLD 285


>gi|67924899|ref|ZP_00518292.1| SUA5/yciO/yrdC, N-terminal [Crocosphaera watsonii WH 8501]
 gi|67853266|gb|EAM48632.1| SUA5/yciO/yrdC, N-terminal [Crocosphaera watsonii WH 8501]
          Length = 199

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 22/193 (11%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           +  G  I+ PT+TV  LA      +    ++  KKRP   PLI   S    + K+    P
Sbjct: 13  VKQGKVISFPTDTVPALAALPNYAS---LIFATKKRPPDKPLILMGSSPKAIWKYVQGTP 69

Query: 79  LSLHL----AKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVPCGFTKKLIETYG 132
               +     + +WPG LTLVL        D++PL  +   T   R+P     + I    
Sbjct: 70  EEFRIWQEVVQKYWPGQLTLVLPASELVPKDMNPLDNS---TIGVRIPDSVIARNILKET 126

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIID------GGISKIGLESTIVNVQCE 186
             LA  SAN SG+     ++ I+ S       L++D      G     GL ST+     +
Sbjct: 127 GCLATTSANLSGEPPKEKLREIVVSFPN---ALVLDKEPLNNGKKYGSGLPSTVAKWTNQ 183

Query: 187 KKVRILRPGGLEI 199
               ILR G +++
Sbjct: 184 G-WIILRQGSIQL 195


>gi|126208610|ref|YP_001053835.1| hypothetical protein APL_1140 [Actinobacillus pleuropneumoniae L20]
 gi|212277671|sp|A3N1E4|RIMN_ACTP2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|126097402|gb|ABN74230.1| hypothetical protein APL_1140 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 184

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 70/187 (37%), Gaps = 12/187 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           N L    E L     +A PTE V+GL  +  N +A+R L ++KKRP    LI       +
Sbjct: 2   NNLENIVEQLKRNRVVAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLILIAPTKEL 61

Query: 70  VKKHASVDPLSLHLAKLF-WP--GPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123
           +  +   + L+    ++F  P    +T V+   +   +    T    T   R   +P   
Sbjct: 62  LLPYIDENKLTAAHWQIFETPSERAITWVMP--AKKAVPQYLTGQFDTIAVRLCCIPA-- 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L E  G  L   S N +GQ        +       + P +++   +       I ++
Sbjct: 118 VIDLCERTGFALTSTSCNLTGQEPCRTADEV-KLQFGADFP-VLEAETAGKTNPPEIRDI 175

Query: 184 QCEKKVR 190
             +   R
Sbjct: 176 FTQHIFR 182


>gi|328675606|gb|AEB28281.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida 3523]
          Length = 204

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 4/195 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D
Sbjct: 12  NNLSELKELANILDNDGVIAIPTDSGYALACSMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +S + ++A VD  +  L K + PG  T +L          L T +  T   RV   +  K
Sbjct: 72  LSEISEYAKVDNNAYRLLKRYTPGSYTFILKATKKVS-SLLVTKSKNTVGIRVSEHYVPK 130

Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            I    G PL + S    G   +      + + I   I  +++         +T+V +  
Sbjct: 131 AISAEIGEPLVVSSFIIPGHQHVVTDCADVDNQIMNYIDAVVESDYCGYD-PTTVVELL- 188

Query: 186 EKKVRILRPGGLEIE 200
           E   +ILR G  EI+
Sbjct: 189 ELPYQILRQGAGEID 203


>gi|300865647|ref|ZP_07110419.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336348|emb|CBN55569.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 197

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 73/191 (38%), Gaps = 13/191 (6%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A +       I+ PT+TV  LAV    P A   ++  KKR    PLI   +    +  + 
Sbjct: 12  AAKL--GNQIISFPTDTVPALAV---RPEASELIFTTKKRDREKPLILMGATPEHLWPYI 66

Query: 75  SVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           +  P  L     +A   WPG LTLVL          ++  +  T   RVP     + I  
Sbjct: 67  TGTPEQLQIWQQIAASHWPGALTLVLPASPKVP-PAMNPTDPTTIGLRVPNLAIAQKILQ 125

Query: 131 YGHPLAIPSANRSGQISITNVKHIL--SSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
              PLA  SAN SGQ  +     I      +       +    +  GL ST+        
Sbjct: 126 QTGPLATTSANLSGQPPLETAAEIQQNFPEVLTLEASELKTTTTASGLPSTVAKWSGN-S 184

Query: 189 VRILRPGGLEI 199
             ILR G +E+
Sbjct: 185 WEILRQGAVEL 195


>gi|262341230|ref|YP_003284085.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272567|gb|ACY40475.1| Sua5/YciO/YrdC/YwlC family protein [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 192

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 11/191 (5%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
             + K+ + L  G  +  PT+TV+GL  D+ N  AI ++ +IK R     +I  V  +  
Sbjct: 5   EEIEKSVDILKKGKSLLYPTDTVWGLGCDAFNVEAINKICKIKNRSFSKSMILLVESMDR 64

Query: 70  VKKHA-SVDPLSLHLA---KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           + +    +   +  +          P+T+V D +    I     +   T   R+    F 
Sbjct: 65  LHQLVGKITDFTRQIIVDNIAKKNKPITIVYDHV--NQIASNLLSEDNTLAIRLTYDPFC 122

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--STIVN 182
             LI+    P+   SAN SG  S  +    +S SI  +I   ++    +I     S+I+ 
Sbjct: 123 VCLIQNLDRPIISTSANLSGFSSPKSFSE-ISPSILSQIDYAVNFRRKEIANHRCSSIIK 181

Query: 183 VQCEKKVRILR 193
           +  ++ V+ILR
Sbjct: 182 IVSDQ-VKILR 191


>gi|149178883|ref|ZP_01857462.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Planctomyces maris DSM 8797]
 gi|148842295|gb|EDL56679.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Planctomyces maris DSM 8797]
          Length = 369

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 17/238 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A ++L  G  +A PT T Y +A  S +P A+ +L  +       PL+  V     
Sbjct: 15  DVIHLAVQYLAKGELVAFPTATAYVIAGQSLSPAAMTKLRALTG--GDQPLVLCVKGFDE 72

Query: 70  VKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLST----TDIHPLSTANL---KTACFRVPC 121
            + +   + PL+  LAK  WPGP+ L L+        + + P   + +        R P 
Sbjct: 73  AQDYLPEMPPLARKLAKRCWPGPVVLELERPQPGSLFSQLPPEVQSEICPGSQLRLRAPA 132

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               ++I         P    +          ++     +E+ L+ID G S+ G +STIV
Sbjct: 133 H---EIIFQAMRLSPSPLVLLNEDSKYQTADSLI-DDFGEEVALVIDDGPSRFGDQSTIV 188

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAPRSQVR 237
            +  + + +IL+PG +   TLKR  S + +  C   T  +P + G+ +   A + + +
Sbjct: 189 GI-VDNQWKILQPGVVTETTLKRLSSEIYMFVCTGNTCRSPMAEGLFRKLLADKLKCQ 245


>gi|254415268|ref|ZP_05029030.1| hypothetical protein MC7420_2694 [Microcoleus chthonoplastes PCC
           7420]
 gi|196178074|gb|EDX73076.1| hypothetical protein MC7420_2694 [Microcoleus chthonoplastes PCC
           7420]
          Length = 205

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 25/196 (12%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
           ++G  ++ PT+T+  LAV          ++ +K+R    PLI   S  S +  +      
Sbjct: 14  NSGQIVSFPTDTIPALAVRPDYAE---LIFTLKQRSNNKPLILMGSFPSSLWSYVKGTDA 70

Query: 80  SL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
            L     +AK +WPG LTLVL            T +  T   RVP       I +   PL
Sbjct: 71  ELEIWQQVAKHYWPGALTLVLPASDKVPAAMNPT-DPTTIGLRVPDSRVAIAILSQTGPL 129

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-----------GLESTIVNVQ 184
           A  SAN SG+  +  +  I +       P ++    ++            G  ST+V   
Sbjct: 130 ATTSANVSGKPPLHTMPEIEAE-----FPEVLTLHPTESKELEERHPYSKGAPSTVVKWT 184

Query: 185 CEKKVRILRPGGLEIE 200
            +   +ILR G +  +
Sbjct: 185 GDG-WQILRQGAVSFD 199


>gi|302338452|ref|YP_003803658.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301635637|gb|ADK81064.1| Sua5/YciO/YrdC/YwlC family protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 191

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 19/202 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           +S  D N L    E L  G P+ +P +T+YG+      P + +++  +K R   NP +  
Sbjct: 5   ISKDDPNLLDVLTEVLFRGEPVIMPCDTMYGIVGIV--PASEKKIRALKDRLETNPFLQL 62

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG- 122
           + + S++ +      +   L + +WPG LTL+LD +              T   R+P   
Sbjct: 63  I-NFSLLPRVVR-GKVPARLMR-YWPGALTLILDAVEG-----------GTVGVRIPDDE 108

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++ IE  G PL   S N+SGQ +I N    + +     + LI+D GI   G  STI+N
Sbjct: 109 LLQRCIERVGMPLYSTSVNKSGQPNI-NAIEEIVALFGSRVELIVDAGIMGQGQASTIIN 167

Query: 183 VQCEKKVRILRPGGLEIETLKR 204
            + E    +LR G + ++ +K 
Sbjct: 168 ARSE-PYVLLRQGAVCVDGIKN 188


>gi|298493040|ref|YP_003723217.1| SUA5/yciO/yrdC domain-containing protein ['Nostoc azollae' 0708]
 gi|298234958|gb|ADI66094.1| SUA5/yciO/yrdC domain protein ['Nostoc azollae' 0708]
          Length = 192

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 11/184 (5%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
            AG  I+ PT TV  L   +  P     +Y  K+R    PLI   +    +  +     +
Sbjct: 13  KAGKLISFPTGTVPAL---ATIPEQAELIYAAKQRSLDKPLILMAAKTEDLWDYVQGSDI 69

Query: 80  SLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
             H+       +WPG LTLVL   +        T +  T   RVP     + I  +  P+
Sbjct: 70  EYHIWQEVVNRYWPGALTLVLPASNKISQVMNPT-DPTTIGIRVPNHTVAQTILAHTGPM 128

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A  S N SGQ ++  +  I       E+  +       +G+ ST+         +ILR G
Sbjct: 129 ATTSVNLSGQPALQTLAEI--EMQFPEVFTLESTEYKGLGIPSTVAKWMGND-WQILRQG 185

Query: 196 GLEI 199
            ++I
Sbjct: 186 VIKI 189


>gi|87120381|ref|ZP_01076276.1| hypothetical protein MED121_09318 [Marinomonas sp. MED121]
 gi|86164484|gb|EAQ65754.1| hypothetical protein MED121_09318 [Marinomonas sp. MED121]
          Length = 185

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 7/189 (3%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M IT    +    + L  G  IA PTE V+GL  D +N TA+ +L EIK RP    +I  
Sbjct: 1   MIITSDPLI--IADLLKRGGIIAYPTEAVWGLGCDPQNQTAVIKLLEIKSRPMNKGMILA 58

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
             D + +      + P         +  P + ++              + ++   R+   
Sbjct: 59  AGDKTHLSPWLEQLSPELGAKLTATYDSPTSWIVPDQGIAPA--WVRGDHQSIALRLSTH 116

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              + +   +   +   SAN +G     +++ I++      I  I D  + +    S I 
Sbjct: 117 AGVQAICHAFDACIVSTSANPAGLDPALSLEQIMT-YFRDNIDAIFDVPLGQSKQPSQIK 175

Query: 182 NVQCEKKVR 190
           ++  ++ +R
Sbjct: 176 SLLDDQVIR 184


>gi|304405647|ref|ZP_07387306.1| SUA5/yciO/yrdC domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304345686|gb|EFM11521.1| SUA5/yciO/yrdC domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 216

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 8/205 (3%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +    RKA E +  G  +  P++T   L ++     AI R + IK RPA + L     + 
Sbjct: 11  NEENFRKAAECVVNGGIVIAPSDTNLALTLNPWKDDAIERAFAIKNRPATSALTLFFLEP 70

Query: 68  SMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFT 124
              K +A      L    A  FWPGPL ++L    +  I         T           
Sbjct: 71  GEWKDYAEAADPGLVQAFADAFWPGPLNIILPKKPS--ISDRMVCGGSTVALGCLSNPVW 128

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVK-HILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           + +++    P+A+ SAN SGQ     V   +    +   +  I+ G        STI+++
Sbjct: 129 RGMMKYTNMPVAMTSANLSGQADGVLVDLDLALRQVGGNVDYILKGEAQGTTKSSTIIDL 188

Query: 184 QCEKKVRILRPGGLEIETLKRAISV 208
                 RI R G +  E L +   +
Sbjct: 189 T--GTPRITRYGDVTREQLNQIAPI 211


>gi|312075017|ref|XP_003140229.1| yrdC domain-containing protein [Loa loa]
 gi|307764605|gb|EFO23839.1| yrdC domain-containing protein [Loa loa]
          Length = 232

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 23/219 (10%)

Query: 2   QIMSITDSN---ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ +++S     + +  +  ++G  +A+PT+T+YG+     N     +LY++K+R  + 
Sbjct: 10  KIIRLSESTCSATICRCLQIFESGGIVALPTDTLYGVVTTLSNSD---KLYKLKRRNHLK 66

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PL   VS++  V++       +  L +   PGP+TL+ +   +T +  +      T   R
Sbjct: 67  PLGLFVSNVRDVQRWCRQTIDNSQL-RTLLPGPVTLIFER--STFLPRIFNPEHGTVGIR 123

Query: 119 VPCG-FTKKLIETY-GHPLAIPSANRS-GQISITNVKHILSSSICKEIPLIIDGGI---- 171
           +P   F + L+      PLA  SAN S  Q +   ++      +  E+ LIIDGG+    
Sbjct: 124 IPDHDFVRSLMTRLDDVPLAQTSANISNNQNNPICIED--FKDLWSELDLIIDGGVILRP 181

Query: 172 -SKIGLE-STIVNVQCEKKVRILRPGG---LEIETLKRA 205
             K+  E ST+VN+       I+R G       E L+  
Sbjct: 182 DGKVNHEGSTVVNLSIPGTYSIIRDGCARTATEEKLRDC 220


>gi|262371339|ref|ZP_06064657.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262313676|gb|EEY94725.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 189

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A + L  G  +A PTE V+GL  D  N  A   + +IK+RP    +I     I+
Sbjct: 3   TTSVTEAAQCLKQGQVLAYPTEAVWGLGCDPYNEQAFLDILQIKQRPIEKGVILLAGQIA 62

Query: 69  MVKKHAS-VDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+     +DP         W          T +L   +   I      N      RV  
Sbjct: 63  QVEPLLEHLDPRIRQQVIDSWSDRSPSERATTWLLP--ANELIPTWIKGNHPKVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN +G     +++         +    ++G +      S I
Sbjct: 121 HPICVALCNAFQGFIVSTSANPAGLPPARSLQDANH--YFAQQVNYLNGDLGLSQEPSRI 178

Query: 181 VNVQCEKKVRI 191
           ++ +    VR 
Sbjct: 179 LDAETGAVVRA 189


>gi|257455999|ref|ZP_05621208.1| SUA5/YciO/yrdC domain protein [Enhydrobacter aerosaccus SK60]
 gi|257446588|gb|EEV21622.1| SUA5/YciO/yrdC domain protein [Enhydrobacter aerosaccus SK60]
          Length = 201

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 74/207 (35%), Gaps = 22/207 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           MQ     +   L    +FL AG  +A PTE V+G+  D  N  A++++  IK+RP    +
Sbjct: 1   MQF----NDTQLDAVQQFLQAGNLLAYPTEAVWGIGCDPFNEIAVKQILAIKQRPIEKGM 56

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWP----GPLTLVLDLLSTT--DIHPLSTANLK 113
           I    DI+ ++     +    ++     W        T +L + ++    I    T    
Sbjct: 57  IVITGDIAHIQPFLQPLPQEVVNTIATSWQSSDAQATTWLLPIPASLQGKIPDWVTGGRD 116

Query: 114 TACFRV-PCGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILSSSICKEIP 164
           +   RV       KL     H         L   S N SG    T+            I 
Sbjct: 117 SLAIRVISHPMIAKLCNHIAHADNNNPFGFLVSTSCNLSGLTPATDFDAAY-HYFGDAIG 175

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRI 191
            ++ G        S I +   +++VR 
Sbjct: 176 YLL-GDTLGFVRPSQIFDALTQQQVRA 201


>gi|46190984|ref|ZP_00120796.2| COG0009: Putative translation factor (SUA5) [Bifidobacterium longum
           DJO10A]
          Length = 186

 Score =  120 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 7/177 (3%)

Query: 36  AVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL-HLAKLFWPG---P 91
           A D RN  AI R+Y +K+RP    L   ++    + +     P  L  L+  F PG   P
Sbjct: 2   ACDPRNKAAIDRIYRLKRRPRYKALQVLLASTDQLDELGLDLPSPLNRLSAAFLPGAFSP 61

Query: 92  LTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNV 151
           + +     +   +   +     T   R+P       I     PLA  SANRSG  S   V
Sbjct: 62  IAVARPDCTLETLADTADGRPGTQGIRIPNSALCLAILKATGPLAASSANRSGDESAQTV 121

Query: 152 KHILSSSICKEIPLIIDGGISKIGLESTIVNVQ--CEKKVRILRPGGLEIETLKRAI 206
           +  +  +   E+ L +DGG ++  + ST+V         + ILR G +    +++A+
Sbjct: 122 QEAV-DAFGSEVDLYLDGGPTQGHVSSTVVKADPYARDGIEILREGVIAQNVIRKAL 177


>gi|242082095|ref|XP_002445816.1| hypothetical protein SORBIDRAFT_07g026230 [Sorghum bicolor]
 gi|241942166|gb|EES15311.1| hypothetical protein SORBIDRAFT_07g026230 [Sorghum bicolor]
          Length = 312

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 68/201 (33%), Gaps = 17/201 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    + ++ G    IPT+TVY +  D  N  +I RL  +K      PL      +  + 
Sbjct: 88  LDPIIDLINRGAVGVIPTDTVYSIVCDLSNNESIERLRRLKGIGDSKPLSILCRSLRDID 147

Query: 72  KHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLSTA------NLKTACF 117
            + +  P              K   PGP T +L          +           +    
Sbjct: 148 TYTTGFPRGTNQGQANIFRAVKRAIPGPYTFILPATKQFPKQCIKHGSSTRYAKRRQVGV 207

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175
           R+P     + +++    PL   S     +        I++       +  I+DGG  +I 
Sbjct: 208 RIPDDPICQAILQNLDEPLICTSVKYLSEDEWILDPVIIADLYEPLGLDFIVDGGP-RIA 266

Query: 176 LESTIVNVQCEKKVRILRPGG 196
             ST+V++       I +  G
Sbjct: 267 DPSTVVDMMGTNPTIIRQGKG 287


>gi|124025123|ref|YP_001014239.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           NATL1A]
 gi|123960191|gb|ABM74974.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           NATL1A]
          Length = 199

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 13/203 (6%)

Query: 1   MQIMS----ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           MQ ++    IT    +      L  G     PT+T+  L      P   ++++ IKKRP+
Sbjct: 1   MQFVAENEMITQQFGIFDLALKLKKGSLALFPTDTLPALC---SYPKYSKKIWTIKKRPS 57

Query: 57  MNPLICHVSDISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
             PLI        + +         SL LAK++WPG LT+VL  +   +       N   
Sbjct: 58  SKPLILMGGCSDDLFEFVHPCALEESLQLAKIYWPGALTMVLPTIG--NFSKYLNGNSNA 115

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
             FRVP     + +     PLA  SAN SG+  + +            I   I    S  
Sbjct: 116 VGFRVPALRIARDLLMQTGPLATTSANISGETPVKDAMEASIQFPEIPILAPI-PWPSSS 174

Query: 175 GLESTIVNVQCEKKVRILRPGGL 197
           G+ ST+V  +   K  +LRPG +
Sbjct: 175 GMASTVVEWK-NGKWNLLRPGSV 196


>gi|332298150|ref|YP_004440072.1| SUA5/yciO/yrdC domain protein [Treponema brennaborense DSM 12168]
 gi|332181253|gb|AEE16941.1| SUA5/yciO/yrdC domain protein [Treponema brennaborense DSM 12168]
          Length = 193

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 16/199 (8%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   ++ +       L  G  + IPT+TVYG +     P A   +  IK R    P I 
Sbjct: 2   IILKKEAESADAVVRALRGGHVVIIPTDTVYGFSGIV--PVADAEIRAIKGRSETKPFIR 59

Query: 63  HVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
            +S    V  +     P SL+     WPG LTL++ L ++    P      +TA FR P 
Sbjct: 60  LISSPEAVFAYTDDSIPDSLY---ALWPGALTLIVTLNASCASFP-----GETAAFRCPG 111

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS--KIGLES 178
             + +++I   G P+   S NRSGQ  + +V   + +   +E+ LI+D   S  +  L S
Sbjct: 112 DEWLRQVIAGCGAPVYSTSVNRSGQPLLRSVAE-MDAEFGREVALIVDAQDSLPQDALPS 170

Query: 179 TIVNVQCEKKVRILRPGGL 197
           T+VN+       +LR G +
Sbjct: 171 TLVNISG-GTYTVLRQGSV 188


>gi|254373899|ref|ZP_04989381.1| hypothetical protein FTDG_00053 [Francisella novicida GA99-3548]
 gi|151571619|gb|EDN37273.1| hypothetical protein FTDG_00053 [Francisella novicida GA99-3548]
          Length = 204

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 4/195 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D
Sbjct: 12  NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +S + ++A VD  +  L K + PG  T +L+         L T +  T   RV   +  +
Sbjct: 72  LSEISEYAKVDNNAYRLLKRYTPGSYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130

Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            I    G PL I S    G   +      + S I   +  +++         +T+V +  
Sbjct: 131 AISAEIGEPLVISSFIVPGHQYVVTDCAEVDSQIMNYLDAVVESDYCGYD-PTTVVELL- 188

Query: 186 EKKVRILRPGGLEIE 200
           E   +ILR G  EI+
Sbjct: 189 ELPYQILRQGAGEID 203


>gi|296104309|ref|YP_003614455.1| hypothetical protein ECL_03972 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058768|gb|ADF63506.1| hypothetical protein ECL_03972 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 201

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 10/195 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +      L  G  + +PT+T Y LA D  N  A +++Y++KKR    PL   V++ +   
Sbjct: 4   IHNTVAALKRGEVVLVPTDTNYALAADPWNIDACQKIYDLKKRERQKPLTLFVAEPAQAW 63

Query: 72  KHASVDPL----SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
            + +VD +    +L       PG L +V+        +P       +           ++
Sbjct: 64  DYIAVDKVQHRAALDKLIGAMPGALNVVVPASDNVPQNPYLKPE--SISLVCNHQSVLRE 121

Query: 127 LIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIVNVQ 184
           +I  +G PL + SAN SG +            +    +  I+      +  + STIV++ 
Sbjct: 122 VIALFGRPLGMSSANLSGVESDCLIDIDAARQTFGDRVGYILPAVQRPVTTVSSTIVSLL 181

Query: 185 CEKKVRILRPGGLEI 199
            EK+++ILR G ++I
Sbjct: 182 -EKEIKILRAGDMDI 195


>gi|146329578|ref|YP_001209160.1| SUA5/yciO/yrdC domain-containing protein [Dichelobacter nodosus
           VCS1703A]
 gi|146233048|gb|ABQ14026.1| Sua5-YciO-YrdC-YwlC domain protein [Dichelobacter nodosus VCS1703A]
          Length = 208

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 81/194 (41%), Gaps = 8/194 (4%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +    LD G  I  P++T Y L        A  R+  +++    +      SD++ +  
Sbjct: 18  NEILNILDKGGVIVAPSDTGYALLCRLDAKNASVRIRRLRQLDDDHFFTLLCSDLTHLSH 77

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST-ANLKTACFRVPCGFTKK-LIET 130
           +A VD +   L K  +PG  T +L   ++ ++  L      KT   R+P     + LI  
Sbjct: 78  YARVDNVQFRLLKTLFPGAFTCILP--ASREVPRLVQHEKRKTIGIRLPNHPILQPLITA 135

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           +G  L   S     + +  +V  +  + +   + LIID G   +   ST++++       
Sbjct: 136 HGAALMGVSLFDDSERNP-DVYQLDKAQLNS-LDLIIDVGELAV-TPSTVLDLTVM-PPT 191

Query: 191 ILRPGGLEIETLKR 204
           I+R G  +   ++R
Sbjct: 192 IIRHGAGDASFIER 205


>gi|282865698|ref|ZP_06274748.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE]
 gi|282559342|gb|EFB64894.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. ACTE]
          Length = 206

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 72/194 (37%), Gaps = 6/194 (3%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +    + + +   IA PT++ Y L     +   I R+  I+     +       + + + 
Sbjct: 17  ISNVADSIRSDALIAYPTDSCYALGTRLGSRDGIDRIRSIRDLDDRHHFTLMCQNFAQLG 76

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCG-FTKKLIE 129
           +   +D       K   PG  T +L   +T ++   L     KT   R+P    T+ L+E
Sbjct: 77  QFVQIDNDVFRTVKAATPGSYTFILP--ATKEVPKQLLHPKKKTVGVRIPDHTVTQALLE 134

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PL   +     +         +   +   + +++D G       +T+++      +
Sbjct: 135 ELGEPLLSSTLLLPDEEEPLTQGWEIKERLDHVVDIVLDSGDCGT-EPTTVIDFSNGD-L 192

Query: 190 RILRPGGLEIETLK 203
            I+R G  ++   +
Sbjct: 193 EIVRRGAGDVSRFE 206


>gi|294633614|ref|ZP_06712172.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14]
 gi|292830256|gb|EFF88607.1| Sua5/YciO/YrdC/YwlC family protein [Streptomyces sp. e14]
          Length = 155

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIH- 242
                  ILRPGG+  E L+ A+   L   V  TST + PG   SHYAPR++V L A   
Sbjct: 8   LTGDTPSILRPGGVTREDLEAALGHPL--TVPATSTVRVPGQHPSHYAPRARVVLVAPEK 65

Query: 243 -----VNPREALIRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDSGAS 295
                   RE   R G +    +    +  +  +     L   A  L+ +++  D  G  
Sbjct: 66  VVHEAEQARELGHRVGVLLPPGLTEDAVPAHAVVPVPDSLTAYARGLYGHLRELDQRGCD 125

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPR 322
            I  S     GLG+AI NRL RAA PR
Sbjct: 126 LIVASLPEEKGLGLAIANRLRRAAGPR 152


>gi|318042639|ref|ZP_07974595.1| hypothetical protein SCB01_13075 [Synechococcus sp. CB0101]
          Length = 198

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 12/204 (5%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M  +S + S+        L AG     PT+T+  L   +  P +   L+E+K+RP   P+
Sbjct: 1   MSSLSCSPSDL----AHRLQAGEAALFPTDTLPAL---ATKPESAELLWELKQRPRHKPV 53

Query: 61  ICHVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           I   +    + +     ++P   H+A  +WPG LTLVL    T            T   R
Sbjct: 54  ILMAATGQALLECLGQPIEPAWQHMADRYWPGALTLVLPARGT--WLEQLNPGGSTLGLR 111

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +P       + T   PLA  SANRSG+ +  + K   +    +   L      +  G  S
Sbjct: 112 LPACPAALELLTLSGPLATTSANRSGEPACLDHKEA-AERFPQVAQLAPVPWPAPSGQGS 170

Query: 179 TIVNVQCEKKVRILRPGGLEIETL 202
           T++      + ++LR G L    L
Sbjct: 171 TVIEWLPSGQWQLLRAGALLPPEL 194


>gi|261416990|ref|YP_003250673.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373446|gb|ACX76191.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326738|gb|ADL25939.1| Sua5/YciO/YrdC/YwlC family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 195

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 9/188 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDI 67
              +++A E L+    +  PTE+ Y +  ++ +  AI +LY +KK P         V DI
Sbjct: 12  PRIVKQAAEILEDDGLVLYPTESGYAIGCNAESSKAIHKLYALKK-PMKKFFMALIVPDI 70

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
                +A V   + ++ K   PGP T +L   +   I             R+P   F K+
Sbjct: 71  RFATGYAHVSNFAFNIIKQRVPGPYTFILP--ADPHIARKLDVKRPEIGIRIPTHPFFKE 128

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L + +  P+   +A  S +         +  +    + +++D G  +I   + +V++  +
Sbjct: 129 LFQHFDKPILSTAAKLSEEDMFETDD--IWKTFQHSVDMMVDCGNIEIN-PTNVVSLVGD 185

Query: 187 KKVRILRP 194
             V ++R 
Sbjct: 186 -CVEVIRG 192


>gi|330444529|ref|YP_004377515.1| SUA5 protein [Chlamydophila pecorum E58]
 gi|328807639|gb|AEB41812.1| SUA5 protein [Chlamydophila pecorum E58]
          Length = 290

 Score =  119 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 16/195 (8%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76
           +  G  +AIPT+TV+GL     +P A  +LY++KKR     L  +V+ +  ++K     +
Sbjct: 17  IQLGKVVAIPTDTVFGLVCSQHSPQAKTQLYQMKKRSKSKTLAVYVNTLEEIEKMIHRPL 76

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPL 135
               L +AK F PGPL+L+L        +P  + +  T  FR+      ++LI   G PL
Sbjct: 77  SSQELRVAKTFLPGPLSLILHNK-----NPEFSES--TLTFRIVNHPVVQELISVCG-PL 128

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
              SAN S          +L     K   L I  G   +GLEST+ +V       + R G
Sbjct: 129 VGTSANISDFPPAVYAHEVLEDF--KTEDLCIFDGDCFLGLESTVASV---DPFILYREG 183

Query: 196 GLEIETLKRAISVEL 210
            +   +++  +   +
Sbjct: 184 VISCVSIESCLEAVV 198


>gi|328676531|gb|AEB27401.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida Fx1]
          Length = 204

 Score =  119 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 4/195 (2%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D
Sbjct: 12  NNLSELKELANILDNDGVIAIPTDSGYALACRMKSKKGIDKIIKIRNLDSSHNFTLCCKD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +S + ++A VD  +  L K + PG  T +L+         L T +  T   RV   +  +
Sbjct: 72  LSEISEYAKVDNNAYRLLKRYTPGSYTFILNATKKVS-SLLVTKSKNTVGIRVSEHYVPR 130

Query: 127 LIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
            I    G PL I S    G   +      + S I   +  +++         +T+V +  
Sbjct: 131 AISAEIGEPLVISSFIVPGHQYVVTDCAEVDSQIMNYLDAVVESDYCGYDQ-TTVVELL- 188

Query: 186 EKKVRILRPGGLEIE 200
           E   +ILR G  EI+
Sbjct: 189 ELPYQILRQGAGEID 203


>gi|254507292|ref|ZP_05119428.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 16]
 gi|219549752|gb|EED26741.1| Sua5/YciO/YrdC family protein [Vibrio parahaemolyticus 16]
          Length = 111

 Score =  119 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           +   +A   L+ G  IA PTE V+G+  D  NP AI++L E+K+RP    LI   +    
Sbjct: 2   DNFDRALNALNDGEVIAYPTEGVFGVGCDPDNPEAIQKLLELKQRPVEKGLILIAASYEQ 61

Query: 70  VKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLK 113
           +  +     L+    +     WPGP+T ++    +  +    +    
Sbjct: 62  LLPYIDESQLTAQQLEQVHQTWPGPVTWIMPC--SDKVSNWVSGQFD 106


>gi|326522757|dbj|BAJ88424.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 321

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 17/205 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    + +++G    IPT+TVY +  D  N  +I RL  IK      PL      +  + 
Sbjct: 107 LDPVVDLINSGAVGVIPTDTVYSIVCDLSNNDSIERLRRIKGIVNSKPLSILCRSLRDID 166

Query: 72  KHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLST------ANLKTACF 117
            + +  P              K   PGP T +L          +        A  +    
Sbjct: 167 TYTTGFPQGTNQGQANIFRAVKRILPGPYTFILPATKELPKQCIKHGSSTRYAKRRQVGV 226

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175
           R+P     + +++    PL   S     +         ++       +  I+DGG ++I 
Sbjct: 227 RMPDDPICQAILQNLEEPLICTSVKNLTEDEWILDPVTIADIYEPLGLDFIVDGG-ARIA 285

Query: 176 LESTIVNVQCEKKVRILRPGGLEIE 200
             ST+V++       I +  G +++
Sbjct: 286 DPSTVVDMTGSYPTIIRQGKGAKLD 310


>gi|72383532|ref|YP_292887.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           NATL2A]
 gi|72003382|gb|AAZ59184.1| putative translation factor (SUA5) [Prochlorococcus marinus str.
           NATL2A]
          Length = 191

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 9/194 (4%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           IT    +      L  G     PT+T+  L      P   ++++ IKKRP+  PLI    
Sbjct: 2   ITQQFGIFDLALKLKKGSLALFPTDTLPALC---SYPKYSKKIWTIKKRPSSKPLILMGG 58

Query: 66  DISMVKKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
               + +         SL LAK++WPG LT+VL  +   +      AN     FRVP   
Sbjct: 59  CSDDLFEFVHPCALEESLQLAKIYWPGALTMVLPTIG--NFSKYLNANSNAVGFRVPALR 116

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             + +     PLA  SAN SG+  + +            I   I    S  G+ ST+V  
Sbjct: 117 IARDLLMQTGPLATTSANISGETPVKDAMEASIQFPEIPILAPI-PWPSSSGMASTVVEW 175

Query: 184 QCEKKVRILRPGGL 197
           +   K  +LRPG +
Sbjct: 176 K-NGKWNLLRPGSV 188


>gi|220905671|ref|YP_002480982.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862282|gb|ACL42621.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7425]
          Length = 200

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 73/202 (36%), Gaps = 19/202 (9%)

Query: 11  ALRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++      + +G   I+ PT+TV  L   +  P     ++  K+R    PLI   +    
Sbjct: 5   SIPALVAGVRSGEWLISFPTDTVPAL---ATRPDRAELIFAAKQRQPDKPLILMAATPEA 61

Query: 70  VKKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           +  +         +    A+ +WPG LTLVL                KT   R+P     
Sbjct: 62  LWPYVQGSTAEWQIWQSVAERYWPGALTLVLPASDRLPAVMNPIEG-KTIGVRIPNWGLA 120

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSI-------CKEIPLII-DGGISKIGLE 177
             I     PLA  S NRSGQ       + +            ++  L   D   +  GL 
Sbjct: 121 LTILQQTGPLATTSVNRSGQP-PLTALNEIEQQFSQVFTPPAEQWDLPTSDRRDTSAGLP 179

Query: 178 STIVNVQCEKKVRILRPGGLEI 199
           ST+         +ILR G +++
Sbjct: 180 STVAKWTPTG-WQILRQGAVQL 200


>gi|224055737|ref|XP_002298628.1| predicted protein [Populus trichocarpa]
 gi|222845886|gb|EEE83433.1| predicted protein [Populus trichocarpa]
          Length = 322

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 28/219 (12%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN-------- 58
           +D+  L    E L  G    IPT+TVY +  D ++ +AI RL  IK              
Sbjct: 82  SDTWKLEPVIELLKQGAVGVIPTDTVYAIVCDLKSNSAIERLRRIKNIEPSKARNMASLH 141

Query: 59  -PLICHVSDISMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTD---IHP 106
            PL      +  +  + +  P              K   PGP T +L          +  
Sbjct: 142 SPLYILCHSLRDIDTYTTGFPRGDGQGHADIFRAVKHCLPGPYTFILTASKELPKQCVRY 201

Query: 107 LST----ANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK 161
            +T    A+ K    R+P     + ++E    PL   S     +        +++     
Sbjct: 202 GTTTAKYASRKNVGIRMPDDAICQAILEKMDAPLISTSVRSPKENEWMIDPVVIADIYGA 261

Query: 162 E-IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           E +  +++GGI ++   ST+V++      +I+R G    
Sbjct: 262 EGLDFVVNGGI-RVADPSTVVDMTGSSP-KIIRQGKGPK 298


>gi|70952331|ref|XP_745341.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525633|emb|CAH80221.1| hypothetical protein PC000787.03.0 [Plasmodium chabaudi chabaudi]
          Length = 169

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I + +  +   E +     I  PTETVYGL  +S +  +++ ++++K RP  +P+I HV 
Sbjct: 11  IKNDDVKKMLKEHIKKNNLIGFPTETVYGLGGNSLSEISLKNIFKMKNRPVSDPIISHVY 70

Query: 66  DISMV-KKHASVDPLSLHLA----KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           DI+    +   ++    ++       F PGPL+++    +   +  + TA+ +    R+P
Sbjct: 71  DIAQAFDQLYHINMYEKYIIYILNSNFSPGPLSVI--AKAKEYLPLILTAHTQFCAVRIP 128

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
                +++I+    P+A PSAN+   IS TN  H+    
Sbjct: 129 NNKIAREIIKICNIPIAAPSANKFQHISPTNSLHVYEEF 167


>gi|93007286|ref|YP_581723.1| SUA5/yciO/yrdC-like [Psychrobacter cryohalolentis K5]
 gi|122414663|sp|Q1Q7W4|RIMN_PSYCK RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|92394964|gb|ABE76239.1| SUA5/yciO/yrdC-like [Psychrobacter cryohalolentis K5]
          Length = 214

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 26/209 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ITDS    +A  +L  G  +A PTE+V+G+  D  N  A+ RL +IK+RP    +I    
Sbjct: 8   ITDSTI--QAATWLKNGQLLAYPTESVWGIGCDPFNKQAVMRLLDIKQRPIEKGMIVVTD 65

Query: 66  DISMVKKHAS----------VDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLK 113
             S +               +D               T +L +       I    T    
Sbjct: 66  SPSRITALLEGLTAVERQTVLDSWQADSINATAKQAHTWLLPIPKNLPITIPSWITGAHD 125

Query: 114 TACFRV-PCGFTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSICKEI--- 163
           +   RV      K+L             +   S N SG+    ++    S  +   +   
Sbjct: 126 SVAVRVIDHPLVKQLCAQMVSVSNPYGFVVSTSCNPSGKPPALSLIEAQSYFLGDNVNSD 185

Query: 164 --PLIIDGGISKIGLESTIVNVQCEKKVR 190
                + G      L S I +    + +R
Sbjct: 186 ECVGYLKGETLGYQLPSQIGDALTGQVIR 214


>gi|166363633|ref|YP_001655906.1| putative translation factor [Microcystis aeruginosa NIES-843]
 gi|166086006|dbj|BAG00714.1| putative translation factor [Microcystis aeruginosa NIES-843]
          Length = 195

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 12/197 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            + +L +      +G  ++ PT+TV  LAV    P A   ++  KKR    PLI   +  
Sbjct: 2   PTASLNEIVHAALSGQVVSFPTDTVPALAVSP--PYA-ALIFAAKKRTFDKPLILMAASA 58

Query: 68  SMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + +  +   +     +   + +  WPG LTLVL          L+  N  T   RVP   
Sbjct: 59  ADLWDYVEGNQEEREIWRQMTEKHWPGSLTLVLPAAEKVPKV-LNPKNPSTIGIRVPAHA 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID---GGISKIGLESTI 180
             + I      LA  SAN SGQ  +   + I+++     +    +    GI   G  ST+
Sbjct: 118 IAREILGRTGVLATTSANLSGQEPLLTPEAIMTTFPSVTVLAPTERQAWGIINSGQPSTV 177

Query: 181 VNVQCEKKVRILRPGGL 197
              QC+    ILR G +
Sbjct: 178 ARWQCQG-WDILRQGAV 193


>gi|255319592|ref|ZP_05360804.1| Sua5/YciO/YrdC family protein [Acinetobacter radioresistens SK82]
 gi|262380778|ref|ZP_06073931.1| yrdC [Acinetobacter radioresistens SH164]
 gi|255303347|gb|EET82552.1| Sua5/YciO/YrdC family protein [Acinetobacter radioresistens SK82]
 gi|262297726|gb|EEY85642.1| yrdC [Acinetobacter radioresistens SH164]
          Length = 189

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           + ++ +A E L  G  +A PTE V+GL  D  N  A   +  +K+RP    +I     +S
Sbjct: 3   TTSVTEAAECLSQGKVLAYPTEAVWGLGCDPYNEAAFHEILRLKQRPIEKGVILLAGQLS 62

Query: 69  MVKKH-------ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V+              +     +       T +L   +   I             RV  
Sbjct: 63  QVEHLLVSLNQERQQQVIQQWTQRSVTERATTWLLP--ADEQIPVWIRGQHPKVAVRVTN 120

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L   +   +   SAN +G      ++    S         ++G +      S I
Sbjct: 121 HPLCVALCNAFNSFIVSTSANPAGLEPARTLQEA--SQYFGSELNYLNGDLGLSQQPSRI 178

Query: 181 VNVQCEKKVRI 191
           ++    + +R 
Sbjct: 179 IDAITGEIIRA 189


>gi|78212027|ref|YP_380806.1| hypothetical protein Syncc9605_0477 [Synechococcus sp. CC9605]
 gi|78196486|gb|ABB34251.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 199

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG    IPT+T+ GLAV          L+ +K+RPA  PLI   + ++ +    +V  
Sbjct: 15  LRAGEAAIIPTDTLPGLAVCPDQAQT---LWRLKRRPADKPLILMGASVNDLLHEVAVPC 71

Query: 79  --LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPL 135
                 LA+ +WPG LTLVL          L+     T   R+P C  T+ L++  G PL
Sbjct: 72  HREVEALAERYWPGALTLVLPARDGGAGRYLNPGGT-TLGCRIPACEQTRALLQISG-PL 129

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           A  SANRSG+ +         + +  ++  L         G  ST++    + + R++R 
Sbjct: 130 ATTSANRSGEPASMTAAEA--ALVFPDVSQLGPQPWPQPSGQASTVLVWVDDGRWRLVRR 187

Query: 195 GGLEIETLK 203
           G +    ++
Sbjct: 188 GAVIPAGVE 196


>gi|148725131|emb|CAN84993.1| Sua5/YciO/YrdC/YwlC family protein [Shewanella piezotolerans WP3]
          Length = 129

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +A   +  G  I  PT++ Y L     +  A+ R+  I++    +       D S +  +
Sbjct: 2   QAVNVIQQGGVIVYPTDSGYALGCLLGDKDAMSRIARIRQIDNDHNFSLMCRDQSELATY 61

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           A VD  +  + K   PGP T +           L     KT   RVP    
Sbjct: 62  ARVDNQAYRVLKHNTPGPYTFIFKASKEVP-KRLQNPKKKTIGIRVPDNVI 111


>gi|159031016|emb|CAO88719.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 195

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 12/197 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            + +L +      +G  ++ PT+TV  LAV    P A   ++  KKR    PLI   +  
Sbjct: 2   PTASLNEIVHAALSGQVVSFPTDTVPALAVSP--PYA-ALVFAAKKRTFDKPLILMAASA 58

Query: 68  SMVKKHASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + +  +   +     +   + + +WPG LTLVL          L+  +  T   RVP   
Sbjct: 59  ADLWDYVKGNQEEREIWRQMTEKYWPGSLTLVLPASEKVPKV-LNPKDSSTIGIRVPAHA 117

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID---GGISKIGLESTI 180
             + I      LA  SAN SGQ  +   + I+++     +    +    GI   G  ST+
Sbjct: 118 IAREILGRTGVLATTSANLSGQEPLLTPEAIMTTFPSVTVLAPTERQAWGIINSGQPSTV 177

Query: 181 VNVQCEKKVRILRPGGL 197
              QC ++  ILR G +
Sbjct: 178 ARWQC-QRWDILRQGAV 193


>gi|15923968|ref|NP_371502.1| hypothetical protein SAV0978 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926567|ref|NP_374100.1| hypothetical protein SA0838 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282589|ref|NP_645677.1| hypothetical protein MW0860 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485754|ref|YP_042975.1| hypothetical protein SAS0848 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651669|ref|YP_185850.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161016|ref|YP_493580.1| hypothetical protein SAUSA300_0880 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194672|ref|YP_499468.1| hypothetical protein SAOUHSC_00915 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267411|ref|YP_001246354.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393464|ref|YP_001316139.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|151221060|ref|YP_001331882.1| hypothetical protein NWMN_0848 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979304|ref|YP_001441563.1| hypothetical protein SAHV_0973 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509177|ref|YP_001574836.1| hypothetical protein USA300HOU_0936 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253316139|ref|ZP_04839352.1| hypothetical protein SauraC_08342 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731585|ref|ZP_04865750.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253732664|ref|ZP_04866829.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255005767|ref|ZP_05144368.2| hypothetical protein SauraM_04840 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795288|ref|ZP_05644267.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9781]
 gi|258406937|ref|ZP_05680090.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9763]
 gi|258421905|ref|ZP_05684826.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9719]
 gi|258435302|ref|ZP_05689041.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258441514|ref|ZP_05690874.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A8115]
 gi|258447213|ref|ZP_05695362.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258449973|ref|ZP_05698071.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A6224]
 gi|258452071|ref|ZP_05700087.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258455486|ref|ZP_05703445.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262049328|ref|ZP_06022202.1| hypothetical protein SAD30_1626 [Staphylococcus aureus D30]
 gi|262052998|ref|ZP_06025175.1| hypothetical protein SA930_1983 [Staphylococcus aureus 930918-3]
 gi|282894004|ref|ZP_06302235.1| hypothetical protein SGAG_01355 [Staphylococcus aureus A8117]
 gi|282922257|ref|ZP_06329952.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282927200|ref|ZP_06334822.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|284023904|ref|ZP_06378302.1| hypothetical protein Saura13_04914 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294847966|ref|ZP_06788713.1| hypothetical protein SKAG_00021 [Staphylococcus aureus A9754]
 gi|295405784|ref|ZP_06815593.1| hypothetical protein SMAG_00940 [Staphylococcus aureus A8819]
 gi|296276110|ref|ZP_06858617.1| hypothetical protein SauraMR_07162 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208388|ref|ZP_06924818.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297245375|ref|ZP_06929246.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus A8796]
 gi|300912464|ref|ZP_07129907.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304381469|ref|ZP_07364119.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13700782|dbj|BAB42078.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246747|dbj|BAB57140.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204027|dbj|BAB94725.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49244197|emb|CAG42623.1| hypothetical protein SAS0848 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285855|gb|AAW37949.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126990|gb|ABD21504.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202230|gb|ABD30040.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740480|gb|ABQ48778.1| SUA5/yciO/yrdC, N-terminal domain [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945916|gb|ABR51852.1| SUA5/yciO/yrdC domain protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150373860|dbj|BAF67120.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721439|dbj|BAF77856.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160367986|gb|ABX28957.1| hypothetical protein USA300HOU_0936 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253724584|gb|EES93313.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253729442|gb|EES98171.1| Sua5/YciO/YrdC family protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257789260|gb|EEV27600.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9781]
 gi|257841476|gb|EEV65917.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9763]
 gi|257842238|gb|EEV66666.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A9719]
 gi|257848963|gb|EEV72946.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257852304|gb|EEV76230.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A8115]
 gi|257853961|gb|EEV76915.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257856893|gb|EEV79796.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           A6224]
 gi|257860286|gb|EEV83118.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257862304|gb|EEV85073.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159091|gb|EEW44158.1| hypothetical protein SA930_1983 [Staphylococcus aureus 930918-3]
 gi|259162560|gb|EEW47128.1| hypothetical protein SAD30_1626 [Staphylococcus aureus D30]
 gi|269940479|emb|CBI48856.1| hypothetical protein SATW20_09770 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282590889|gb|EFB95964.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282593547|gb|EFB98541.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282763490|gb|EFC03619.1| hypothetical protein SGAG_01355 [Staphylococcus aureus A8117]
 gi|285816657|gb|ADC37144.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus 04-02981]
 gi|294824766|gb|EFG41188.1| hypothetical protein SKAG_00021 [Staphylococcus aureus A9754]
 gi|294969219|gb|EFG45239.1| hypothetical protein SMAG_00940 [Staphylococcus aureus A8819]
 gi|296887127|gb|EFH26030.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297177678|gb|EFH36928.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus A8796]
 gi|298694217|gb|ADI97439.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886710|gb|EFK81912.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304339832|gb|EFM05776.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312829374|emb|CBX34216.1| yrdC domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130441|gb|EFT86428.1| hypothetical protein CGSSa03_03433 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197330|gb|EFU27668.1| hypothetical protein CGSSa01_00481 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141206|gb|EFW33053.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143263|gb|EFW35053.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313645|gb|AEB88058.1| SUA5/yciO/yrdC, N-terminal domain protein [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329726220|gb|EGG62690.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329728282|gb|EGG64721.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329729046|gb|EGG65458.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 213

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 9/199 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +      K +     
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I     P+A
Sbjct: 78  TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPIA 135

Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
           I SAN SG     +      +   + + +  ++     +     STI+ V  + K+ +LR
Sbjct: 136 ITSANISGTADDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193

Query: 194 PGGLEIETLKRAISVELEY 212
            G ++ E +K  +   + Y
Sbjct: 194 EGDIKFEEIKERLGTGIIY 212


>gi|33866507|ref|NP_898066.1| hypothetical protein SYNW1975 [Synechococcus sp. WH 8102]
 gi|33633285|emb|CAE08490.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 201

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 10/194 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  + L  G    IPT+TV GLA+    P A   ++ +K+RPA  PLI   +   ++ +H
Sbjct: 13  ELADHLLQGGAAVIPTDTVPGLAIAP--PHA-GDIWRLKRRPADKPLILMGATAEVLLRH 69

Query: 74  ASVD--PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           A       +  +A+  WPG LTLV+   +   +             R+P C  +++L+  
Sbjct: 70  AQPSCRDDARWMAERHWPGALTLVVP--AHGAVLEALNPGGTCLGLRIPNCRQSRELLHR 127

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PLA  SAN SG+ +        +        L     +   G  ST+++     +  
Sbjct: 128 TG-PLATSSANPSGEPAAMT-PEQAAVYFPNLPQLGPQPWLPPSGQASTVISWTSSGRWN 185

Query: 191 ILRPGGLEIETLKR 204
           +LR G +  + +  
Sbjct: 186 VLRQGAVIPQGITE 199


>gi|332976018|gb|EGK12889.1| Sua5/YciO/YrdC/YwlC family protein [Psychrobacter sp. 1501(2011)]
          Length = 228

 Score =  117 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 73/230 (31%), Gaps = 42/230 (18%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M + +   +  + +A ++L  G  +A PTE+V+G+  D+ N  A+ ++  IK RPA   +
Sbjct: 1   MNLNTQNITTEIEQAAQWLQQGKLLAYPTESVWGIGCDAYNEEAVNQILTIKNRPAEKGM 60

Query: 61  ICHVSDISMVKKHASVDPLSL--HLAKLFWP------------GPLTLVLDLL------- 99
           I    +I  V+      P+     +   + P               T +L L        
Sbjct: 61  IVVTDNIDRVRPLIDQLPVQRQQQIIDSWAPQSNKGDASRDTQQAHTWLLPLPLSKSELQ 120

Query: 100 ------------STTDIHPLSTANLKTACFRV-PCGFTKKLIETYG------HPLAIPSA 140
                           I    T    +   RV       +L +           +   S 
Sbjct: 121 SKSESELTALAQQDPVIPYWITGKHNSIAVRVINHPLIAQLCKKMVSDSNPYGLIVSTSC 180

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           N SGQ      +   +    KE    + G      L S I        +R
Sbjct: 181 NPSGQAPAVTFEQAYA--YFKEDIGYLQGDTLGYTLPSQIREGLTGDIIR 228


>gi|323443843|gb|EGB01455.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus O46]
          Length = 213

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 9/199 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +      K +     
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I     P+A
Sbjct: 78  TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYIKSPIA 135

Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
           I SAN SG     +      +   + + +  ++     +     STI+ V  + K+ +LR
Sbjct: 136 ITSANISGTADDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193

Query: 194 PGGLEIETLKRAISVELEY 212
            G ++ E +K  +   + Y
Sbjct: 194 EGDIKFEEIKERLGTGIIY 212


>gi|329118384|ref|ZP_08247090.1| translation factor RimN [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465430|gb|EGF11709.1| translation factor RimN [Neisseria bacilliformis ATCC BAA-1200]
          Length = 187

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 8/191 (4%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           +I+S  ++  L+     L  G  IA PTE+ YG+    R+  A++ L  +K+RP    +I
Sbjct: 3   RILSAAETGRLK---NRLRRGGLIAYPTESCYGIGCLPRHAGALKSLVRLKRRPQHKGMI 59

Query: 62  CHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                +S ++     +           WP   T +L       +  L          RVP
Sbjct: 60  VVGDSLSRLRPLLRPLFAADAAALDGIWPARQTFLLPAARNVPV-LLRGRGRGKLAVRVP 118

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + +    G PL   S NR+G+    + + +           ++ G        S 
Sbjct: 119 AHAAARDVCYLLGTPLVSTSCNRAGKRPCRSAREVRRQF--GRDVYVVGGRCGGSKTPSR 176

Query: 180 IVNVQCEKKVR 190
           I +    +++R
Sbjct: 177 ISDWATGERLR 187


>gi|260434270|ref|ZP_05788240.1| possible translation factor [Synechococcus sp. WH 8109]
 gi|260412144|gb|EEX05440.1| possible translation factor [Synechococcus sp. WH 8109]
          Length = 204

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 9/188 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L AG    IPT+T+ GLAV          L+ +K+RPA  PLI   + +  +    +V  
Sbjct: 20  LRAGEAAIIPTDTLPGLAVRPDQAQT---LWRLKRRPADKPLILMGASVKDLLHDVAVPC 76

Query: 79  --LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
                 LA+ +WPG LTLVL          L+     T   R+P     + +     PLA
Sbjct: 77  HREVAALAERYWPGALTLVLPARDGGAGRYLNPGGT-TLGCRIPAWEQTRALLQISGPLA 135

Query: 137 IPSANRSGQISITNVKHILSSSICKEIP-LIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
             SANRSG+ +         + +  ++  L         G  ST++    E + R++R G
Sbjct: 136 TTSANRSGEPASMTAAEA--ALVFPDVAQLGPQPWPQPSGQASTVLVWVEEGRWRLVRRG 193

Query: 196 GLEIETLK 203
            +    ++
Sbjct: 194 AVIPAGVE 201


>gi|108804486|ref|YP_644423.1| translation factor SUA5 [Rubrobacter xylanophilus DSM 9941]
 gi|108765729|gb|ABG04611.1| translation factor SUA5 [Rubrobacter xylanophilus DSM 9941]
          Length = 191

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 80/189 (42%), Gaps = 19/189 (10%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVD 77
           +  G    +PTETV GL     +   + R+YEIK R    P+             A  V 
Sbjct: 13  IREGAVALVPTETVVGLVA---SEAGLERIYEIKVRERGKPIALLCRSAEEAFSLAAKVP 69

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
           PL+  LA L+WPGPLTLVLD                T   RVP G  + +++ YG PL  
Sbjct: 70  PLARTLADLYWPGPLTLVLDR-----------PGGGTIGLRVPRGRVRDVLDAYGGPLYA 118

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG-G 196
            SAN SG+     +  +      K   ++   G    G  S +V++     VR+LR    
Sbjct: 119 TSANISGERDPRALDEVDPRVKEKVDVVV--EGEPGGGQASAVVDLSGGG-VRLLRAAEH 175

Query: 197 LEIETLKRA 205
           L  E L R 
Sbjct: 176 LTEERLARL 184


>gi|49483139|ref|YP_040363.1| hypothetical protein SAR0941 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257425028|ref|ZP_05601455.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427692|ref|ZP_05604091.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430327|ref|ZP_05606710.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433024|ref|ZP_05609384.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435928|ref|ZP_05611976.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903515|ref|ZP_06311406.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905293|ref|ZP_06313150.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908272|ref|ZP_06316103.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910553|ref|ZP_06318357.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913751|ref|ZP_06321539.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916229|ref|ZP_06323991.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282923728|ref|ZP_06331406.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|283770045|ref|ZP_06342937.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|293500791|ref|ZP_06666642.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509744|ref|ZP_06668454.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526330|ref|ZP_06671016.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427461|ref|ZP_06820095.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590179|ref|ZP_06948818.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241268|emb|CAG39947.1| hypothetical protein SAR0941 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272598|gb|EEV04721.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275885|gb|EEV07358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279104|gb|EEV09715.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257282439|gb|EEV12574.1| SUA5/yciO/yrdC domain-containing protein [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257285119|gb|EEV15238.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314115|gb|EFB44506.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus C101]
 gi|282319669|gb|EFB50017.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus D139]
 gi|282322363|gb|EFB52686.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325945|gb|EFB56253.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327937|gb|EFB58219.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331700|gb|EFB61212.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596470|gb|EFC01431.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus C160]
 gi|283460192|gb|EFC07282.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|290920872|gb|EFD97934.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095796|gb|EFE26057.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467419|gb|EFF09935.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128597|gb|EFG58229.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576478|gb|EFH95193.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438658|gb|ADQ77729.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194510|gb|EFU24902.1| hypothetical protein CGSSa00_12335 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 213

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 9/199 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +      K +     
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I     P+A
Sbjct: 78  TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPIA 135

Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
           I SAN SG     +      +   + + +  ++     +     STI+ V  + K+ +LR
Sbjct: 136 ITSANISGTANDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193

Query: 194 PGGLEIETLKRAISVELEY 212
            G ++ E +K  +   + Y
Sbjct: 194 EGDIKFEEIKERLGTGIIY 212


>gi|226952179|ref|ZP_03822643.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244]
 gi|226837017|gb|EEH69400.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter sp. ATCC 27244]
          Length = 189

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 67/191 (35%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++  A + L  G  +A PTE V+GL  D  N  A + + E K RP    +I     I 
Sbjct: 3   TSSVADAAQLLKQGQVLAYPTEAVWGLGCDPFNEQAFQNVLECKHRPIEKGVILLAGCIE 62

Query: 69  MVKK-HASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+     ++P   H     W          T +L   +   I             RV  
Sbjct: 63  QVEHLLQDLEPAIRHQVINSWSDRVETERATTWLLP--ADQHIPTWIKGQHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +L   +G  +   SAN +G     +++     +        + G +      S I
Sbjct: 121 HPLCVQLCHHFGGFVVSTSANPAGLAPARSLEEA--HNYFGHSLHYLAGNLGLSQEPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + VR 
Sbjct: 179 LNALTGEVVRA 189


>gi|147790869|emb|CAN77236.1| hypothetical protein VITISV_024209 [Vitis vinifera]
          Length = 750

 Score =  115 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 1/96 (1%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +   TD++A  +A E + AG  IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL  
Sbjct: 612 VRPATDAHA-EEAIEAIKAGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAI 670

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL 98
            V D+  +++ A  D L   L     PGP+T+VL  
Sbjct: 671 CVGDVLDIQRFAVTDHLPDGLLGSLLPGPVTVVLRR 706


>gi|282851603|ref|ZP_06260968.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282557571|gb|EFB63168.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 82

 Score =  115 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 1  MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
          M+   I     + +A E L  G  +A PTETVYGL   + N  A++ +Y  K RP+ NPL
Sbjct: 1  MET-KIFSKKQIPEAVELLKKGELVAFPTETVYGLGALATNEKAVKGVYAAKGRPSDNPL 59

Query: 61 ICHVSDISMVKKHASVDPLSLH 82
          I  VSD  M++ + +  P    
Sbjct: 60 IVTVSDEKMMENYVNEVPERAK 81


>gi|145349506|ref|XP_001419173.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579404|gb|ABO97466.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 244

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 26/209 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L +  E +  G   AIPT+T Y    D  N  A+++LY+IK      PL       + + 
Sbjct: 19  LDQVAEAIRRGEVGAIPTDTKYAFVADLTNADAVQKLYDIKDAGLNKPLSILCRGFADID 78

Query: 72  KHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLK 113
            + +  P        L   LAK   PGP T +L          L             + K
Sbjct: 79  AYTTGFPNNPKPGATLPFKLAKQCLPGPYTFILPASKELPKVCLVDKSTKDKARQCKSRK 138

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGI 171
           T   R+P C  T+ L++    PL   +          +   ++  +     +  I+D G 
Sbjct: 139 TVGVRIPACEVTRALLDLLDAPLMCSTV-----PECDDEPAVIHDTYLPRGLGFIVDIGE 193

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIE 200
            ++   ST+V++   +  R+LR G  + +
Sbjct: 194 RQMAAASTVVDLSAGEP-RVLRRGAGDPD 221


>gi|228470823|ref|ZP_04055671.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3]
 gi|228307496|gb|EEK16501.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas uenonis 60-3]
          Length = 200

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 10/193 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM-NPLICHVSD 66
           D   +R+  + L++G  I  PT   Y L   +    A+ ++ +IK   +  + L     D
Sbjct: 11  DYAVVREVVQCLESGGVIIYPTGVGYALGCSALKKRAVEQVCQIKGVDSKRHTLAIMCQD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTK 125
           +  V ++A +   +  L K     P T +L   +T           K    +      T+
Sbjct: 71  LGEVAQYAKLGNETFALMKSGEYEPATYILPPTTTLPAP---FRQRKEVGVQLCKHPVTR 127

Query: 126 KLIETYGHPLAI---PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            ++E    PL     P        +      ++      ++ LIIDGG++  G  S I++
Sbjct: 128 IILEELEAPLLTGSLPDLPEGYDTNYLTDPELIEEYYGHQVDLIIDGGVAPGG-HSAILD 186

Query: 183 VQCEKKVRILRPG 195
               +  ++LR G
Sbjct: 187 CTGAEP-QLLREG 198


>gi|113475329|ref|YP_721390.1| SUA5/yciO/yrdC-like [Trichodesmium erythraeum IMS101]
 gi|110166377|gb|ABG50917.1| SUA5/yciO/yrdC-like [Trichodesmium erythraeum IMS101]
          Length = 197

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 78/205 (38%), Gaps = 16/205 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M ++SI     +  A     +G  ++ PT+TV  LA           ++++K R    P+
Sbjct: 1   MSLVSI--ETLIEGAI----SGNLVSFPTDTVPALAARPDRAN---LIFQVKGRSQDKPV 51

Query: 61  ICHVSDISMVKKHASVDPLSLHLAK----LFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           I   ++ + +  +       L L +     +WPG LTLVL                 T  
Sbjct: 52  ILMGANAASLWPYICGSDQELQLWQRVAGKYWPGQLTLVLPASEMVPRVMNPVEGT-TIG 110

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKI 174
            RVP     + I     PLA  SAN SGQ ++  +  I        +  +          
Sbjct: 111 VRVPNCDIARKIMARTGPLATTSANISGQPTLGKMAEISRQFPEVLVVSLSQSEEIMLTS 170

Query: 175 GLESTIVNVQCEKKVRILRPGGLEI 199
           G+ ST+       +  ILR G +++
Sbjct: 171 GVPSTVAKWNGIARWEILRQGAVKL 195


>gi|118576874|ref|YP_876617.1| translation factor [Cenarchaeum symbiosum A]
 gi|118195395|gb|ABK78313.1| translation factor [Cenarchaeum symbiosum A]
          Length = 189

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           D + +R+A + + +G  I  PT+TVYG+  D  +  A+  ++ IK R    PL      I
Sbjct: 23  DEDGIRRAVDAVRSGGVIVFPTDTVYGMGCDPYDAKAVGEIFRIKGRDPEKPLPLLAHSI 82

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT 102
             ++  A++      +   FWPGPLT+V +L    
Sbjct: 83  GDLEGVAAL-EGYGGMTSRFWPGPLTIVAELRDGR 116


>gi|294648882|ref|ZP_06726338.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825273|gb|EFF84020.1| Sua5/YciO/YrdC/YwlC family protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 189

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 12/191 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++  A + L  G  +A PTE V+GL  D  N  A + + E K RP    +I     I 
Sbjct: 3   TSSVADAAQLLKQGQVLAYPTEAVWGLGCDPFNEQAFQNVLECKHRPIEKGVILLAGCIE 62

Query: 69  MVKK-HASVDPLSLHLAKLFW------PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P 120
            V+     ++P   H     W          T +L   +   I             RV  
Sbjct: 63  QVEHLLQDLEPAIRHQVINSWSDRVETERATTWLLP--ADQHIPTWIKGQHPLVAVRVTT 120

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                +L   +G  +   SAN +G     ++      +        + G +      S I
Sbjct: 121 HPLCVQLCHHFGGFVVSTSANPAGLAPARSLGEA--QNYFGHSLHYLAGNLGLSQEPSRI 178

Query: 181 VNVQCEKKVRI 191
           +N    + VR 
Sbjct: 179 LNALTGEVVRA 189


>gi|257457519|ref|ZP_05622686.1| Sua5/YciO/YrdC/YwlC family protein [Treponema vincentii ATCC 35580]
 gi|257444905|gb|EEV19981.1| Sua5/YciO/YrdC/YwlC family protein [Treponema vincentii ATCC 35580]
          Length = 182

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 19/183 (10%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           L  G  I IPT+T+YG +           +  IK R    P I  +++ + + ++  +  
Sbjct: 18  LKKGNVIIIPTDTIYGFSGLIGKTA--ELIARIKGREENKPFIALIAEPADIYRYTEL-K 74

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
           +  H+    WP PLTL++ L               T  FR P   + + ++   G  +  
Sbjct: 75  IPEHIL-NLWPAPLTLIVPLK-----------GQGTQAFRCPADEWLRSVVAAAGDAVYS 122

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            S NRSG   +T++K I        + L++DGG  + GL ST+V++      R+LR G +
Sbjct: 123 TSVNRSGTSPLTDIKTICKE-FEDSVGLVVDGGNLE-GLPSTLVDLTSGTP-RVLRQGSV 179

Query: 198 EIE 200
            I+
Sbjct: 180 VID 182


>gi|126640266|ref|YP_001083250.1| putative Sua5/YciO/YrdC/YwlC family protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 171

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 12/174 (6%)

Query: 26  AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-HASVDPLSLHLA 84
           A PTE V+GL  D  N  A +++ E+K+RP    +I     IS V+    S+   +    
Sbjct: 2   AYPTEAVWGLGCDPFNEQAFQKILELKQRPIEKGVILLAGHISQVEHLLTSLPQTTQQEI 61

Query: 85  KLFWP------GPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIETYGHPLAI 137
              W          T +L   +   I             RV        L   +   +  
Sbjct: 62  IDCWTNHQPSERATTWLLP--ADQHIPSWIKGEHPLVAVRVTTHPLCVALCNAFHGFIVS 119

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
            SAN SGQ    +++              ++G + +    S I+N    + +R 
Sbjct: 120 TSANPSGQEPAHSLQDAC--QYFGSQLNYLNGDLGQSQQPSRIINALTGEVIRP 171


>gi|37522843|ref|NP_926220.1| hypothetical protein glr3274 [Gloeobacter violaceus PCC 7421]
 gi|35213845|dbj|BAC91215.1| glr3274 [Gloeobacter violaceus PCC 7421]
          Length = 197

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 10/181 (5%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH-A 74
             +L AG   A+PT+TV GL      P    ++Y +K R    PLI   +  + +  + A
Sbjct: 22  AAYLRAGGVGAMPTDTVPGLVCL---PEYAEQIYALKGRDEHKPLILLGAAAADLAFYTA 78

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
                   LA+  WPG LTLVL +     +         T   R+P       +     P
Sbjct: 79  QWRSEWTELAERGWPGALTLVLPV--GGRVPAAVHRGGGTVGVRIPNHPDAHALLAKTGP 136

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           LA  SANRSGQ  +      +  +       ++ G     G  ST+V  + +   ++LR 
Sbjct: 137 LASTSANRSGQPVLIE-PQAIRRTFAG--VALLAGTYRGSGTASTVVRWEDDG-WQVLRQ 192

Query: 195 G 195
           G
Sbjct: 193 G 193


>gi|308807076|ref|XP_003080849.1| translation factor-like (ISS) [Ostreococcus tauri]
 gi|116059310|emb|CAL55017.1| translation factor-like (ISS) [Ostreococcus tauri]
          Length = 308

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 78/225 (34%), Gaps = 22/225 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    E +  G   AIPT+T Y    D  N +A+++LY+IK      PL       + + 
Sbjct: 84  LDAVAEAIRRGAVGAIPTDTKYAFVADMSNASAVQKLYDIKGCGYNKPLSILCRGFADID 143

Query: 72  KHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLK 113
            + +  P        L   LAK   PGP T +L          L             + K
Sbjct: 144 AYTTGFPKNVKPGETLPFKLAKKCLPGPYTFILPASKELPKVCLGDNSTKEKAKQCKSRK 203

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           T   R+P     + +        + S              I    + + +  +ID G  +
Sbjct: 204 TVGVRIPDCDVTRALLDLLDAPLMCSTVPECDDEP---AVIYDEYLSRGLGFMIDTGERR 260

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
               ST+V++   +  RILR G  +          EL    D+ +
Sbjct: 261 ASAASTVVDLSSGEP-RILRRGAGDPNVWSSIDEEELVESDDDAA 304


>gi|269202591|ref|YP_003281860.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|262074881|gb|ACY10854.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 213

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 9/199 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +      K +     
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   L ++FW GPL ++L   ++ +    ++ ++   C  V     ++ I     P+A
Sbjct: 78  TEIVDKLVEIFWSGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPIA 135

Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
           I SAN SG     +      +   + + +  ++     +     STI+ V  + K+ +LR
Sbjct: 136 ITSANISGTADDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193

Query: 194 PGGLEIETLKRAISVELEY 212
            G ++ E +K  +   + Y
Sbjct: 194 EGDIKFEEIKERLGTGIIY 212


>gi|283780357|ref|YP_003371112.1| Protein-tyrosine phosphatase, low molecular weight [Pirellula
           staleyi DSM 6068]
 gi|283438810|gb|ADB17252.1| Protein-tyrosine phosphatase, low molecular weight [Pirellula
           staleyi DSM 6068]
          Length = 389

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/287 (23%), Positives = 121/287 (42%), Gaps = 17/287 (5%)

Query: 2   QIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           Q++ + +S+     + +A + L  G  +A PTETVY  A  + NP A+ RL E++   A 
Sbjct: 4   QVIDVQNSDDPRDVVHRAVQALVEGRVVAFPTETVYVAAASALNPAAVGRLLELRGGSAD 63

Query: 58  NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVL-DLLSTTDIHPLSTANLKTA 115
            PL   +        +    P L + LA+  WPGP+TL L D    + +  L  +  K  
Sbjct: 64  IPLSIALRSTDDALDYVPTIPSLGMRLARRCWPGPMTLELADAHPDSVVQRLPPSVKKVI 123

Query: 116 C------FRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                   RVP      ++++    PL I +A  +G      V+ ++  +    + L+++
Sbjct: 124 SPLGNVRLRVPAHALLSEVLKLLAGPLVITAARPAGASDPITVEDVVQKA-ANHVDLVLN 182

Query: 169 GGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDETS-TPQSPGML 226
            G  + G  +++V V     + ILRPG +    L+R  S   +  C   T  +P +  +L
Sbjct: 183 HGRCRFGQRASVVRVL-NSSLEILRPGVISEANLRRLSSWMAVMVCTGNTCRSPMAEALL 241

Query: 227 KSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTG 273
           K   A   QV + A+  +    +                 + + + G
Sbjct: 242 KKRLADHLQVPIDALEDHGYMVMSAGVAAAPGGRSANEAVMVMRERG 288


>gi|269796626|ref|YP_003316081.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542]
 gi|269098811|gb|ACZ23247.1| translation factor SUA5 [Sanguibacter keddieii DSM 10542]
          Length = 206

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 4/188 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
              + +  E L     +  PT++ Y       + T   R+  I+   A +      +D +
Sbjct: 14  PRLVAQVTEMLRDDALVVYPTDSSYAFGCSLNSHTGADRIRRIRHLDAKHHFTLVCADFA 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            + +   +D  +    K   PG  T +L           +    KT   R+P       L
Sbjct: 74  QLGQFVRLDNSAFRAIKSSTPGAYTFILPATKEVP-RRFAHEKKKTVGVRIPDNPVALAL 132

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PL   +       +       +   +   + +++DGG       +T+V+     
Sbjct: 133 VRALGAPLLSSTLLLPDSETQPTDGWQIKEELDHVVDVVVDGGDCGT-EPTTVVDWSSGA 191

Query: 188 KVRILRPG 195
              ++R G
Sbjct: 192 P-EVVRVG 198


>gi|282918675|ref|ZP_06326412.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317809|gb|EFB48181.1| Sua5 YciO YrdC YwlC family protein [Staphylococcus aureus subsp.
           aureus C427]
          Length = 213

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 9/199 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76
           L  G P+ +PT+T Y L     N   I +++E KKR    PL   +      K +     
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQN 77

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I      +A
Sbjct: 78  TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSAIA 135

Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
           I SAN SG     +      +   + + +  ++     +     STI+ V  + K+ +LR
Sbjct: 136 ITSANISGTANDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193

Query: 194 PGGLEIETLKRAISVELEY 212
            G ++ E +K  +   + Y
Sbjct: 194 EGDIKFEEIKERLGTGIIY 212


>gi|283957715|ref|ZP_06375168.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|283791166|gb|EFC29981.1| Sua5/YciO/YrdC/YwlC family protein [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 213

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 9/199 (4%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--V 76
           L  G P+ +PT+T Y L     N   I +++E KKR     L   +      K +     
Sbjct: 18  LQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKSLSLFIDKPEDWKLYGDNQN 77

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLA 136
             +   L ++FWPGPL ++L   ++ +    ++ ++   C  V     ++ I     P+A
Sbjct: 78  TEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGC--VQNKTMRRFISYINSPIA 135

Query: 137 IPSANRSG--QISITNVKHILSSSICKEIPLIIDG-GISKIGLESTIVNVQCEKKVRILR 193
           I SAN SG     +      +   + + +  ++     +     STI+ V  + K+ +LR
Sbjct: 136 ITSANISGTANDILITENEAIKH-MGENVRYMLRSQNKTNYKTSSTIIKVT-DNKIELLR 193

Query: 194 PGGLEIETLKRAISVELEY 212
            G ++ E +K  +   + Y
Sbjct: 194 EGDIKFEEIKERLGTGIIY 212


>gi|42526970|ref|NP_972068.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola ATCC 35405]
 gi|41817394|gb|AAS11979.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola ATCC 35405]
          Length = 184

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 21/201 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGL-AVDSRNPTAIRRLYEIKKRPAMNP 59
           M I+   D  +L  A   L  G  I +PT+TVYG   +       I ++ +   R A   
Sbjct: 1   MVILK-KDPKSLETAASVLKKGEIIIVPTDTVYGFSGIMPFTKEKIIKIKK---RGAEKS 56

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            I  +     + K+    P+   L    WP PL++++                 T+ FR 
Sbjct: 57  FISLIEKPQDIYKYTD-TPVPEILL-NLWPAPLSIIVKDKE----------GRGTSAFRC 104

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + LI   G P+   S N SG+  +++++ I+S     ++ LI+DGG  K GL S
Sbjct: 105 PDDVWLRNLIGKTGFPIYSTSVNYSGEPVLSDIRDIISE-FEDKVSLIVDGGEQK-GLSS 162

Query: 179 TIVNVQCEKKVRILRPGGLEI 199
           TIV++  +K+  I+R G L+I
Sbjct: 163 TIVSLT-DKEPCIIRQGALKI 182


>gi|13358171|ref|NP_078455.1| hypothetical protein UU005m [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762116|ref|YP_001752085.1| hypothetical protein UPA3_0005 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920287|ref|ZP_02931643.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|183508513|ref|ZP_02958040.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701710|ref|ZP_02971402.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168827693|gb|ACA32955.1| conserved hypothetical protein [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902700|gb|EDT48989.1| conserved hypothetical protein [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182675949|gb|EDT87854.1| conserved hypothetical protein [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186700976|gb|EDU19258.1| conserved hypothetical protein [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 184

 Score =  112 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 34/208 (16%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  IT+ N +  A   L A   + IPT+T+ GL   ++N   +  +YEIK+R     +
Sbjct: 1   MKIYRITNLNVIYDA---LMANKCVLIPTDTIIGL--LAKNQD-V--IYEIKQRDRNKKI 52

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I  V+D  ++     +         LFWPG +T++ +                   +R+P
Sbjct: 53  IRFVADYKLLG---DLTVEQKQFLDLFWPGSVTIIKNG----------------ISYRMP 93

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              +  KLI+  G PL   SAN SG+  I N    +         LI      +IG+ ST
Sbjct: 94  NSPYILKLIQKLG-PLYCSSANISGEEPIKNHNEAIF-KFGANSKLIYVEAQQQIGVPST 151

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAIS 207
           IV++    K   +R G   +E +   I 
Sbjct: 152 IVDI---DKWEYIRRGA-NVEMVDMFIK 175


>gi|119503589|ref|ZP_01625672.1| hypothetical protein MGP2080_03580 [marine gamma proteobacterium
           HTCC2080]
 gi|119460651|gb|EAW41743.1| hypothetical protein MGP2080_03580 [marine gamma proteobacterium
           HTCC2080]
          Length = 185

 Score =  112 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 10/184 (5%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  + ++    +A P E V+GL  D  +  A+ +L  +K RP    LI   +  +M+ 
Sbjct: 8   MNEVVQQVEQEGVVACPAEAVWGLTCDPLSEDAVLQLLAMKHRPISKGLIIVAASSTMLG 67

Query: 72  KHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE- 129
                +D    +  +L WPGP T ++            T        RV       L+  
Sbjct: 68  PLLKPLDSAQRNELELSWPGPNTWLVPNRG--LYPDWITGESDEIAIRVTSAPALALLSY 125

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEI--PLIIDGGISKIGLESTIVNVQCEK 187
             G P+   SAN +G     +   ++       +  P ++D   S     STI  V   +
Sbjct: 126 RLGRPVVSTSANPAGAQPARHSFQVVRYFGRGLVRAPGVVDLEAS----PSTIRRVGTGE 181

Query: 188 KVRI 191
            +R 
Sbjct: 182 VLRA 185


>gi|325282693|ref|YP_004255234.1| SUA5/yciO/yrdC domain-containing protein [Deinococcus proteolyticus
           MRP]
 gi|324314502|gb|ADY25617.1| SUA5/yciO/yrdC domain protein [Deinococcus proteolyticus MRP]
          Length = 228

 Score =  112 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 69/184 (37%), Gaps = 9/184 (4%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
            +A PTETV+GL            L   K R          +   +    A    L   L
Sbjct: 37  LVAFPTETVWGLGAPPT-QEGWEALIRAKGRDPKQAFQVSCASPQLALAWAQHPDLLRPL 95

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANR 142
              FWPGPLTLV+   +      L+         RVP     + L+   G  L   S N 
Sbjct: 96  T-AFWPGPLTLVVQARAGLP-EYLAPGGW--VGLRVPAHPAAQALLHGSGGRLLTSSLNL 151

Query: 143 SGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           SGQ    +     +  + +++    DGG    G  ST++ V     + +LR G L +  +
Sbjct: 152 SGQPVARSEAEARALGLAEQVLG--DGGQPPSGEASTVLRVSETG-LDVLRAGALRLADI 208

Query: 203 KRAI 206
           +  +
Sbjct: 209 RACL 212


>gi|116072664|ref|ZP_01469930.1| hypothetical protein BL107_09136 [Synechococcus sp. BL107]
 gi|116064551|gb|EAU70311.1| hypothetical protein BL107_09136 [Synechococcus sp. BL107]
          Length = 202

 Score =  112 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 10/197 (5%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++      L A   + IPT+T+ GLAV  +N      ++ +K+RPA  PLI   + +  +
Sbjct: 11  SIASIARRLQASEAVIIPTDTLPGLAVLPQNAET---IWTLKQRPADKPLILMGATVDAL 67

Query: 71  KKHAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKL 127
            +         +  LA   WPG +TLVL   +                 R+P C  T+ L
Sbjct: 68  LEGVDSRCHNDAKTLAAKHWPGAITLVLP--ARGPYVDYLNPGGSNIGCRIPACAVTQNL 125

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
           +   G PLA  SAN SGQ + T      +        L         G  ST++  +   
Sbjct: 126 LSFSG-PLATSSANPSGQSAATTAL-EAAEFFPDLAQLGPQPWPRHSGEASTVLIWRSVG 183

Query: 188 KVRILRPGGLEIETLKR 204
             RI R G +  E +  
Sbjct: 184 CWRIARHGAVMPEGINA 200


>gi|332295207|ref|YP_004437130.1| SUA5/yciO/yrdC domain protein [Thermodesulfobium narugense DSM
           14796]
 gi|332178310|gb|AEE13999.1| SUA5/yciO/yrdC domain protein [Thermodesulfobium narugense DSM
           14796]
          Length = 203

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/201 (21%), Positives = 91/201 (45%), Gaps = 8/201 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++  + +       +PT+T++ L  D+R+     R++++K+R         V  ++ + +
Sbjct: 7   KRISDQIKNQKIGIVPTDTLFALTGDARSEEVASRIFDVKRRLPDKSFPVFVPSLNWLLE 66

Query: 73  HASVD----PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            A+       + L L+ +FWPGPLT+V  +     +      +   A   V      K+ 
Sbjct: 67  KANFKYVDLEIFLRLSSIFWPGPLTIVSRVFFDFKLSEKVVLDNFLALRVVSHPVINKIF 126

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E    P+   SAN SG+I+  + +     ++ K I     G +    + ST+V +  +  
Sbjct: 127 EDINFPIIGTSANISGKINPLS-QDEFDKTLLKGIDFFAQGELIYY-VPSTVVKL--DSN 182

Query: 189 VRILRPGGLEIETLKRAISVE 209
           V +LR G ++   L++ +S +
Sbjct: 183 VEVLREGVIKKGVLEKVLSRK 203


>gi|325474033|gb|EGC77221.1| Sua5/YciO/YrdC/YwlC family protein [Treponema denticola F0402]
          Length = 184

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 21/201 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGL-AVDSRNPTAIRRLYEIKKRPAMNP 59
           M I+   D  +L  A   L  G  I +PT+TVYG   +       I ++ +   R A   
Sbjct: 1   MVILK-EDPKSLETAASVLKKGEIIIVPTDTVYGFSGIMPFTKEKIIKIKK---RGAEKS 56

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            I  +     + K+    P+   L    WP PL++++                 T+ FR 
Sbjct: 57  FISLIEKPQDIYKYTD-TPVPEILL-NLWPAPLSIIVRDKE----------GRGTSAFRC 104

Query: 120 PCGFT-KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P     + LI   G P+   S N SG+  +++++ I+S     ++ LI+DGG  K GL S
Sbjct: 105 PDDVWLRNLIGLTGFPIYSTSVNYSGEPVLSDIRDIISE-FEDKVSLIVDGGEQK-GLSS 162

Query: 179 TIVNVQCEKKVRILRPGGLEI 199
           TIV++  +K+  I+R G L+I
Sbjct: 163 TIVSLT-DKEPCIIRQGALKI 182


>gi|113954257|ref|YP_729767.1| YrdC domain-containing protein [Synechococcus sp. CC9311]
 gi|113881608|gb|ABI46566.1| yrdC domain, putative [Synechococcus sp. CC9311]
          Length = 205

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/184 (25%), Positives = 73/184 (39%), Gaps = 10/184 (5%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             L AG    +PT+T+  L   +  P    +++ +KKRP   PLI   +D+  +  H S 
Sbjct: 16  AHLRAGGAALLPTDTLPAL---ASMPEQAAQIWRLKKRPQDKPLILMGADVDALLCHVSP 72

Query: 77  DPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
              +    LA+  WPG LTLVL                 T   R+P C     L+   G 
Sbjct: 73  VARADASALAQRHWPGALTLVLPAFG--PCAETLNPGCATLGLRIPACKPMLDLLRCSG- 129

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
           PLA  SAN SG+ +         +     +   I    +     S+++  +  +    LR
Sbjct: 130 PLATTSANLSGEPASRTETEAAGAFPDLPLLAPI-PWPAPSCQASSVIAWRGPQDWHCLR 188

Query: 194 PGGL 197
            G +
Sbjct: 189 RGAV 192


>gi|16330823|ref|NP_441551.1| hypothetical protein sll1866 [Synechocystis sp. PCC 6803]
 gi|1653316|dbj|BAA18231.1| sll1866 [Synechocystis sp. PCC 6803]
          Length = 199

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 16/204 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ S+ +  A         ++ PT+TV  LAV   N      +YE+K+R A  PLI   +
Sbjct: 4   VSQSDLVSAAIAH----RVVSFPTDTVPALAVRPENS---ALIYELKQREASKPLILMAA 56

Query: 66  DISMVKKHASVDPLSLHL----AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            +  +  + +       L       +WPG LTLVL          ++    +T   R+P 
Sbjct: 57  TVEQILPYLAGSQREKQLWQAVMAEYWPGALTLVLPCSEKLP-PEINPRQDQTIGVRIPR 115

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISIT---NVKHILSSSICKEIPLIIDGGISKIGLES 178
                 I     PLA  SAN SGQ  +    ++     +  C +   +   G    GL S
Sbjct: 116 QAISLEILLQTGPLATTSANLSGQPPLEKLADIAETFPAVHCLDCLSLEQQGPIGKGLPS 175

Query: 179 TIVNVQCEKKV-RILRPGGLEIET 201
           T+      K++ +ILR G + ++ 
Sbjct: 176 TVAQWDGAKEIFQILRQGEVVLQD 199


>gi|303279452|ref|XP_003059019.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460179|gb|EEH57474.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 245

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 24/219 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
             +D   L +  + +  G    IPT+T Y    D  +  A++ LY +K      P+   V
Sbjct: 17  DASDDWRLDEIADVIRGGGVGIIPTDTKYAFVADLESRDAVQTLYRLKDAGVGKPMSVLV 76

Query: 65  SDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN----- 111
              S +  +    P            LA+   PGP T +L          L   +     
Sbjct: 77  RGFSDIDAYTQGFPDNVVAGRTQPFKLARQCLPGPYTFILQAGKAMPKICLQDPSTKSKS 136

Query: 112 ---LKTACFRVP-CGFTKKLIETYGHPLAIPSAN---RSGQISITNVKHILSSSI--CKE 162
               KT   R       + L+     PL   +         I       ++         
Sbjct: 137 CKARKTVGVRFSADPVCRALLSRLDRPLLASTVPCEVDGDGIEYAQDPAVMCDDYESEGL 196

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
           +  +ID G+ +    ST++++      ++LR G  +   
Sbjct: 197 LAFVIDCGV-RENPPSTVIDLSG-GAAKLLRRGAGDASA 233


>gi|307152837|ref|YP_003888221.1| SUA5/yciO/yrdC domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306983065|gb|ADN14946.1| SUA5/yciO/yrdC domain protein [Cyanothece sp. PCC 7822]
          Length = 213

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 6/189 (3%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L++G  + +PTE  Y +   +  P AIR++ ++K+  A  PL   ++    V++   V 
Sbjct: 20  ILESGELVIVPTEVSYIIVAHAFKPRAIRKIAQLKRWNAPQPL-VLLTRREKVEEFGVVS 78

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
             S  L   F P P+TL++   +T  I    TA         P  F   L+     P+  
Sbjct: 79  AASQKLINHF-PYPITLIIPKKNT--IPDTITAQHSALFISCPDEFIYNLVAQIPFPMVC 135

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
            +A  S +      +  +      ++PLI+DGG  K   + T+++        IL  G +
Sbjct: 136 TTAGFSDEYKARKYRTAI-ELFDGQVPLIVDGGDCKYDSKGTLIDCTL-PTPTILNFGTV 193

Query: 198 EIETLKRAI 206
            ++ L+  +
Sbjct: 194 SVDDLRSIL 202


>gi|330836515|ref|YP_004411156.1| SUA5/yciO/yrdC domain-containing protein [Spirochaeta coccoides DSM
           17374]
 gi|329748418|gb|AEC01774.1| SUA5/yciO/yrdC domain protein [Spirochaeta coccoides DSM 17374]
          Length = 194

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 24/208 (11%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++S  D  +     + L A   + +P +T+YGL   +R P     L EIK R A    + 
Sbjct: 6   VISRQDERSAEVVVQCLLADHAVILPCDTIYGL--SARVPQGENLLREIKGRSADKSFLV 63

Query: 63  HVSDISMVKKH--ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             + + M +      + P      +  WP PLT +++           T +  T   RVP
Sbjct: 64  L-ATLEMARSLSGGHLPPG----LEEIWPAPLTAIVN-----------TQDGGTIGIRVP 107

Query: 121 CG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS-ICKEIPLIIDGGIS-KIGLE 177
              F +K++E  G P+   S N SG+ ++ +   I S   + + I L + G  S    + 
Sbjct: 108 DDVFIQKILEMVGTPIYSTSVNVSGEKAMLSFDEIFSHYGMDERIALFVIGSSSVGTTMA 167

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRA 205
           STIV+    +  RILR G  +  TL R 
Sbjct: 168 STIVDCTV-RPYRILRQGAYDATTLIRE 194


>gi|226938986|ref|YP_002794057.1| SUA5/YciO/YrdC family protein [Laribacter hongkongensis HLHK9]
 gi|322967314|sp|C1D9T5|RIMN_LARHH RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|226713910|gb|ACO73048.1| probable SUA5/YciO/YrdC family protein [Laribacter hongkongensis
           HLHK9]
          Length = 185

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 7/171 (4%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS- 80
           G  +A  TE+ +GL     N   +R +  +K RP    +I      + +++       + 
Sbjct: 20  GGVLAYATESCFGLGCLPGNARGLRTILRLKGRPNHKGMIVVGRRFADLRRLVRPVDAAG 79

Query: 81  -LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPS 139
              L    WPGP T +L   +   + PL     +T   RV       ++     PL   S
Sbjct: 80  QARLMSR-WPGPTTFLLP--ADRRVLPLLRGRHRTLAVRVSAHHGVAMLTRDLGPLVSTS 136

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           AN +G++S+ N      +    +  +++ G   +    S I++    + +R
Sbjct: 137 ANFAGKVSLKNAAACRRTF--GQEVMVLPGRTGRARRPSAIIDFASGRVLR 185


>gi|241667468|ref|ZP_04755046.1| putative SUA5/YciO/YrdC family protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876015|ref|ZP_05248725.1| Sua5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842036|gb|EET20450.1| Sua5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 180

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 12/186 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    +     +++PT+TVYGL+ +  +  A+ ++  +KKR +    I    +  
Sbjct: 3   TKDLNKIISEITNDQVVSLPTDTVYGLSCNI-SEHAVEKIINLKKRDSSKGFIIISHNYK 61

Query: 69  MVKKHASVDPLSLHLAKLFWP---GPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            + K+     LS    K        P T ++    +       T    T   R V     
Sbjct: 62  HLLKYVDTTKLSEEQIKKICTVQEQPTTWIVPGKVSIQ---WLTGGKPTIAVRLVTTEII 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             +       +   SAN SG+  I N  H ++         I++  + K    S I+++ 
Sbjct: 119 TDICSKMDDAIISTSANISGRDFI-NDPHSINEIFNS--IYILETEV-KSSQPSRIIDII 174

Query: 185 CEKKVR 190
              + R
Sbjct: 175 TGDRYR 180


>gi|318056879|ref|ZP_07975602.1| translation factor SUA5 [Streptomyces sp. SA3_actG]
 gi|318076682|ref|ZP_07984014.1| translation factor SUA5 [Streptomyces sp. SA3_actF]
          Length = 217

 Score =  110 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 11/212 (5%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M +   + L  A + L  G  +A+PT   Y L   + +  A R ++ +K+RP   PL+  
Sbjct: 1   MDVLAPDQLPLAAQLLRTGRLVAMPTPRWYMLCARATDFLATRAIFHVKQRPETKPLLLL 60

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +   + +     +   +  L +  WPG L L L      +  P++ A         P G 
Sbjct: 61  LDPTTTIDALFDLSEDARLLTEHLWPGDLALRLPWKPGAE--PIAAAGSPAL-VGCPDGI 117

Query: 124 TKKLIETYGHPLAI-------PSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIG 175
             +LI T G PLA        P+A  +   ++T  +        K  I  ++DGGI   G
Sbjct: 118 LGRLISTVGEPLAAAVCSISTPAAGAADHPALTVAQVAAFDRRAKAGIAAVVDGGICPHG 177

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
              T+V+   +    + R G +    ++ A++
Sbjct: 178 RHMTVVDCPVDATAHVHREGTVHARAVEAALT 209


>gi|171920600|ref|ZP_02931851.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188524207|ref|ZP_03004268.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867355|ref|ZP_03079359.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273280|ref|ZP_03205816.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554273|ref|YP_002284418.1| Sua5/YciO/YrdC/YwlC family protein [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225550766|ref|ZP_03771715.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|171903310|gb|EDT49599.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195659977|gb|EDX53357.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660831|gb|EDX54084.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249800|gb|EDY74580.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541774|gb|ACI60003.1| Sua5/YciO/YrdC/YwlC family protein [Ureaplasma urealyticum serovar
           10 str. ATCC 33699]
 gi|225379920|gb|EEH02282.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 186

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 35/213 (16%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  IT+ NA+  A   L A   + IPT+T+ GL   ++N   +  +YEIK+R     +
Sbjct: 1   MKIYRITNLNAIYDA---LVANKCVLIPTDTIIGL--LAKNQD-V--IYEIKRRDRNKKI 52

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +  V+D  ++     +         LFWPG +T++ +                   +R+P
Sbjct: 53  VRFVADYKLLG---DLTVEQEQFLDLFWPGSVTVIKNG----------------VSYRMP 93

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              +  KLI+  G PL   SAN SG+  + N    +         LI      +IG+ ST
Sbjct: 94  NSPYILKLIQKLG-PLYCSSANISGEEPVKNHNEAIF-KFGANSKLIYVEAQQQIGVPST 151

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212
           IV++    K   +R G   IE +   I  EL+Y
Sbjct: 152 IVDI---DKWEYVRRGA-NIEMVDMFIK-ELKY 179


>gi|167626887|ref|YP_001677387.1| SUA5/YciO/YrdC family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596888|gb|ABZ86886.1| putative SUA5/YciO/YrdC family protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 180

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 12/186 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    +     +++PT+TVYGL+ +  +  A+ ++  +KKR +    I    +  
Sbjct: 3   TKDLNKIISEITNDQVVSLPTDTVYGLSCNI-SEHAVEKIINLKKRDSSKGFIIISHNYK 61

Query: 69  MVKKHASVDPLSLHLAKLFWP---GPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            + K+     LS    K        P T ++    +       T    T   R V     
Sbjct: 62  HLLKYVDTTKLSEEQIKKICTVQEQPTTWIVPGKVSIQ---WLTGGKPTIAVRLVTTEII 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             +       +   SAN SG+  I N  H ++         I++  + K    S I+++ 
Sbjct: 119 TSICSKMDDAIISTSANISGRDFI-NDPHSINEIFNS--IYILETEV-KSSQPSRIIDII 174

Query: 185 CEKKVR 190
              + R
Sbjct: 175 TGDRYR 180


>gi|185178792|ref|ZP_02964588.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024454|ref|ZP_02997105.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518436|ref|ZP_03003925.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225551267|ref|ZP_03772213.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184209412|gb|EDU06455.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018748|gb|EDU56788.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998149|gb|EDU67246.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|225379082|gb|EEH01447.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 186

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 35/213 (16%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+I  IT+ NA+  A   L A   + IPT+T+ GL   ++N   +  +YEIK+R     +
Sbjct: 1   MKIYRITNLNAIYDA---LVANKCVLIPTDTIIGL--LAKNQD-V--IYEIKRRDRNKKI 52

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +  V+D  ++     +         LFWPG +T++ +                   +R+P
Sbjct: 53  VRFVADYKLLG---DLTVEQEQFLDLFWPGSVTVIKNG----------------VSYRMP 93

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                 KLI+  G PL   SAN SG+  + N    +         LI      +IG+ ST
Sbjct: 94  NSPHILKLIQKLG-PLYCSSANISGEEPVKNHNEAIF-KFGANSKLIYVEAQQQIGVPST 151

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEY 212
           IV++    K   +R G   IE +   I  EL+Y
Sbjct: 152 IVDI---DKWEYVRRGA-NIEMVDMFIK-ELKY 179


>gi|254430370|ref|ZP_05044073.1| hypothetical protein CPCC7001_260 [Cyanobium sp. PCC 7001]
 gi|197624823|gb|EDY37382.1| hypothetical protein CPCC7001_260 [Cyanobium sp. PCC 7001]
          Length = 202

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 10/187 (5%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  E L  G    +PT+T+  LA    +     +++ +K RPA  PLI   +D+  +   
Sbjct: 16  QLAERLRGGEAALLPTDTLPALAACPDHAD---QIWTLKSRPAEKPLILMGADLEQLLPL 72

Query: 74  --ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
                    LHL    WPG LTLVL   ++  +         +   R+P C   + L+  
Sbjct: 73  LGGPWRQEWLHLGHQGWPGALTLVLP--ASGPVAAALNPGRGSLGLRIPACEQARALLRL 130

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            G PLA  SAN SG+ + T       +   +   L         G+ ST++        +
Sbjct: 131 SG-PLATTSANPSGRPAATTAA-EAGAYFPRLPLLGPLPWPGAAGVASTVLAWSASGTWQ 188

Query: 191 ILRPGGL 197
           +LR G +
Sbjct: 189 VLRAGAV 195


>gi|56752239|ref|YP_172940.1| hypothetical protein syc2230_c [Synechococcus elongatus PCC 6301]
 gi|56687198|dbj|BAD80420.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 202

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 11/174 (6%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L        AG  I+ PT+T+  LAV         ++Y +K+RP+  PLI   +  + +
Sbjct: 5   SLAAVITAAQAGQVISFPTDTLPALAVQPDQA---AQIYRLKQRPSEKPLILMAATAAEL 61

Query: 71  KKHASVDPLSL----HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
              A   P        +A  +WPG LTLVL           +  +  +    +P C   +
Sbjct: 62  WPFAQGSPEDQAQWNAIANQYWPGALTLVLPASDRLPAA-ANPLDRSSIGLHIPACALAR 120

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           +++   G PLA  SANRSG+ ++ N    +++   +   L  D      GL ST
Sbjct: 121 QILAETG-PLATTSANRSGEPALLN-PDAIAAEFPEVTVLAEDPWPDPSGLAST 172


>gi|99034957|ref|ZP_01314762.1| hypothetical protein Wendoof_01000418 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 92

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 48/91 (52%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + K    +   L +  PTETVY LA ++ +  +I ++Y+IKKR    PL   VSDI  + 
Sbjct: 2   VSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLT 61

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTT 102
           K A V    + L   F PGP+T +L L +  
Sbjct: 62  KIAKVKERYIDLINHFSPGPITYILPLKNNN 92


>gi|71066688|ref|YP_265415.1| hypothetical protein Psyc_2134 [Psychrobacter arcticus 273-4]
 gi|123647618|sp|Q4FPS7|RIMN_PSYA2 RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|71039673|gb|AAZ19981.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 214

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 24/214 (11%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M + +   ++++ +A  +L  G  +A PTE+V+G+  D  N  A+ +L  IK+RP    +
Sbjct: 1   MSLSTPLITDSVIQAAHWLKKGQLLAYPTESVWGIGCDPFNQQAVMQLLTIKQRPIEKGM 60

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFW---------PGPLTLVLDLLSTT--DIHPLS 108
           I      S +      +D +        W             T +L +       I    
Sbjct: 61  IVVTDSPSRITVLLEGLDAVERQTVLDSWQTDSINGTAKQAHTWLLPISQKLLITIPSWI 120

Query: 109 TANLKTACFRV-PCGFTKKLIETYG------HPLAIPSANRSGQISITNVKHILSSSI-- 159
           T    +   RV      K+L             +   S N +GQ    ++       +  
Sbjct: 121 TGAHDSVAVRVIDHPLVKQLCAQMVSASNPYGFVVSTSCNPAGQPPALSLSEAQRYFLRH 180

Query: 160 ---CKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
                E    + G      L S I +    + +R
Sbjct: 181 HANSNECVGYLKGETLGYQLPSQIGDALTGQIIR 214


>gi|148654173|ref|YP_001281266.1| SUA5/yciO/yrdC domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148573257|gb|ABQ95316.1| SUA5/yciO/yrdC, N-terminal domain [Psychrobacter sp. PRwf-1]
          Length = 262

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 59/235 (25%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A ++L  G  +A PTE+V+G+  D+ N  A+ ++  IK RP+   +I     I  ++ 
Sbjct: 30  EQAAQWLQQGKLLAYPTESVWGIGCDAYNQQAVEQILAIKNRPSEKGMIVVTDSIERIRP 89

Query: 73  -------------HASVDPLSLHLAKLFWPGPLTLVLDLL-------------------- 99
                         AS    +            T +L L                     
Sbjct: 90  LLQQLPQSRQQQIIASWSTRASEENAAHTQQAHTWLLPLKTAEFSATTEADHEDTNTQDI 149

Query: 100 -----------------STTDIHPLSTANLKTACFRV-PCGFTKKLIETYG------HPL 135
                            +   +    T    +   RV       +L +           +
Sbjct: 150 GAHKANASKAHDPHQPGNEALVPYWITGKHDSIAVRVIAHPLIAQLCQQMVSSANPYGLV 209

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              S N SG     + +   +     +    + G      L S I +    + +R
Sbjct: 210 VSTSCNPSGDSPAKSFEQAYA--YFGQDIAYLQGETLGYVLPSQISDASSGQVIR 262


>gi|323455538|gb|EGB11406.1| hypothetical protein AURANDRAFT_61842 [Aureococcus anophagefferens]
          Length = 267

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 11/187 (5%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMVKKHA-SV 76
           L+ G    IPT+T Y       +  A++RL  +K       PL    +D+  + ++    
Sbjct: 76  LNRGGVGVIPTDTSYSFVARVDSKAAVQRLLALKGDENRKKPLSLLCADLGTIDEYTRYT 135

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA----NLKTACFRVP-CGFTKKLIETY 131
              +  L K   PGP T++L                     T   R+P       ++   
Sbjct: 136 SKRTFKLLKAALPGPYTMILPASEALPRMIYKGGARRWKRDTVGVRIPDDPVCAHILSQV 195

Query: 132 GHPLAIPSANRS---GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
             PL   S   S    Q+         + + C  +  ++D G   I   ST+ ++  +  
Sbjct: 196 DGPLFCSSVPTSDDGDQLVCRLPLEGDAQTWCALVDFVVDAGARPI-EGSTVYDLASDDA 254

Query: 189 VRILRPG 195
             ILR G
Sbjct: 255 PAILREG 261


>gi|260804891|ref|XP_002597321.1| hypothetical protein BRAFLDRAFT_203325 [Branchiostoma floridae]
 gi|229282584|gb|EEN53333.1| hypothetical protein BRAFLDRAFT_203325 [Branchiostoma floridae]
          Length = 382

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +N +++  E +  G    +PT+TVY L      P A+ R Y  KK+    P+   +S +S
Sbjct: 209 ANGVKQISELMKGGGICGMPTDTVYVLVAACNRPAAVERAYRTKKQAEERPMSIWISQLS 268

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-----KTACFRVP-C 121
            ++       PL     K  WP  ++LV+      D   L  +       ++   R+P C
Sbjct: 269 QLEPAREEFGPLLWDFMKEVWPSSISLVIKRGPWLDRFGLGDSARFIGTPESIAIRIPDC 328

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                LI+  G P+A+ SAN SG+   T+   +L + +   +   +
Sbjct: 329 TVATHLIDLVG-PIAVTSANPSGEADTTHHSQVL-AKLGDNVSATL 372


>gi|260804903|ref|XP_002597327.1| hypothetical protein BRAFLDRAFT_203412 [Branchiostoma floridae]
 gi|229282590|gb|EEN53339.1| hypothetical protein BRAFLDRAFT_203412 [Branchiostoma floridae]
          Length = 372

 Score =  108 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 11/164 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +N +++  E + AG    +PT+TVY L      P A+ R Y  KK+    P+   +S +S
Sbjct: 205 ANGVKQIAELMKAGGICGMPTDTVYVLVAACNRPAAVERAYRTKKQAEERPMSIWISQLS 264

Query: 69  MVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-------KTACFRVP 120
            ++       PL     K  WP  ++L    L    +      +        ++   R+P
Sbjct: 265 QLEPAREEFGPLLWDFMKEVWPSSISLYYVHLPGPWLDRFGLGDSAHYIGTPESIAIRIP 324

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163
            C     LI+  G P+A+ SAN SG+   T+   +L + +   +
Sbjct: 325 DCTVATHLIDLVG-PIAVTSANPSGEADTTHHSQVL-AKLGDNV 366


>gi|78185423|ref|YP_377858.1| hypothetical protein Syncc9902_1857 [Synechococcus sp. CC9902]
 gi|78169717|gb|ABB26814.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 202

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 77/196 (39%), Gaps = 10/196 (5%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
                 L A   + IPT+T+ GLAV  +N      ++ +K+RPA  PLI   + +  + +
Sbjct: 13  AAVARRLQASEAVIIPTDTLPGLAVLPQNANT---IWTLKQRPADKPLILMGATVEALLE 69

Query: 73  HAS--VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIE 129
                    +  +A   WPG +TLVL                     R+P C  T+ L+ 
Sbjct: 70  GVDSCCHDDAKTMATKHWPGAITLVLPARGIY--VDYLNPGGSNIGCRIPACAITQNLLS 127

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKV 189
             G PLA  SAN SGQ + T      +        L         G  ST++  +     
Sbjct: 128 ISG-PLATSSANPSGQSAATTAF-EAAELFPDLAQLGPQPWPRHSGQASTVLIWRSVGCW 185

Query: 190 RILRPGGLEIETLKRA 205
           RI R G +  E +  A
Sbjct: 186 RIARRGAVMPEGINAA 201


>gi|313229165|emb|CBY23750.1| unnamed protein product [Oikopleura dioica]
          Length = 243

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 49/232 (21%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           +L  A + L     IA PT+T++G+A    + +  RR+YEIK R    P+    S I  +
Sbjct: 7   SLENAKKQLSKDGVIAFPTDTLFGIAAQISSESGYRRIYEIKGRSEAKPVAVCFSTIPQI 66

Query: 71  KKH---------------ASVDPLS-------------------LHLAKLFWPGPLTLVL 96
            ++               +   P++                     L     PGP+TLV+
Sbjct: 67  LQYLPALDRFRELLMHGRSEAKPVAVCFSTIPQILQYLPALDRFRELLSRLLPGPVTLVV 126

Query: 97  DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
                   H     N +T   R+P     +L+     PL + SAN+SG  S         
Sbjct: 127 PRGKFIPEH--VNPNCETIGIRIPDNTISRLLSQA-EPLCLTSANKSGAKSAITSND--F 181

Query: 157 SSICKEIPLIIDGGISKIGLE-------STIVNVQCEKKVRILRPGGLEIET 201
           + +   +  I++   +++G+        ST+V +  + K   +R  G   + 
Sbjct: 182 ADLHPLLDAIVE---TELGIPTSMSRAGSTVVELNLQAKTYFIRRKGCAFDA 230


>gi|126640869|ref|YP_001083853.1| hypothetical protein A1S_0813 [Acinetobacter baumannii ATCC 17978]
          Length = 157

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 4/160 (2%)

Query: 45  IRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI 104
           + R+ +I+     +       D+S +  +A VD  +  L K   P   T +L   S    
Sbjct: 1   MERIAQIRGLGPKHQYAIMCCDLSDIATYAKVDNATYRLLKANTPAITTFILPATSEVP- 59

Query: 105 HPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163
             L     KT   R+P     + L++  G PL   +    GQ    +  + + + + K I
Sbjct: 60  RRLMHPKKKTIGLRIPSNPICQALLKELGEPLLTSTLILPGQEDPLDDPYDIENQLAKRI 119

Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
            + IDGG   +   S IV++  E    I+R G  ++   +
Sbjct: 120 DVFIDGGFGTLTTTS-IVDLSGEHP-EIIRRGVGDVSAFE 157


>gi|87124889|ref|ZP_01080736.1| hypothetical protein RS9917_02768 [Synechococcus sp. RS9917]
 gi|86167209|gb|EAQ68469.1| hypothetical protein RS9917_02768 [Synechococcus sp. RS9917]
          Length = 213

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 13/200 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            TDSNAL      L  G    +PT+T+  L   +  P   R+++++K+RP   PLI   +
Sbjct: 16  ATDSNAL---LHQLRMGGAAMLPTDTLPAL---ASLPEHARQIWQLKRRPLRKPLILMGA 69

Query: 66  DISMVKKHA--SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           +   +  H    V   +  LA   WPG LTLVL     T  H        T   R+P C 
Sbjct: 70  EPESLLTHVAPEVRGEAAALASAHWPGALTLVLPASGPTVQH--LHPGAATLGLRIPDCA 127

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            T+ L+   G PLA  S NRSG+ +  + +   +        L         G  ST++ 
Sbjct: 128 PTRHLLSLSG-PLATTSINRSGEPAAQSAREA-TQCFPSLPLLGPLPWPEPSGQASTVLA 185

Query: 183 VQCEKKVRILRPGGLEIETL 202
                + ++LR G +  + L
Sbjct: 186 WLGPGRWQLLRQGAVMPKGL 205


>gi|313885993|ref|ZP_07819731.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332299351|ref|YP_004441272.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312924523|gb|EFR35294.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332176414|gb|AEE12104.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 200

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM-NPLICHVSD 66
           D   +R+  + L++G  I  PT   Y L   +    A+ ++ +IK   +  + L     D
Sbjct: 11  DYAVVREVVQCLESGGVIIYPTGVGYALGCSALKKRAVEQVCQIKGVDSKRHTLAIMCQD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTK 125
           +  V ++A +   +  L K     P T +L   +T           K    +      T+
Sbjct: 71  LGEVAQYAKLGNETFALMKSGKYEPATYILPPTTTLP---TPFRQRKEVGVQLCKHPVTR 127

Query: 126 KLIETYGHPLAI---PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            ++E    PL     P       ++      ++      ++ LIIDGG++  G    I++
Sbjct: 128 IILEELEAPLLTGSLPDLPEGYDMNYLTDPELIEEYYGHQVDLIIDGGVAPGGHG-AIID 186

Query: 183 VQCEKKVRILRPGGL 197
              E   ++LR G +
Sbjct: 187 CTGETP-QLLREGTI 200


>gi|218512322|ref|ZP_03509162.1| probable translation factor protein [Rhizobium etli 8C-3]
          Length = 91

 Score =  107 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/88 (61%), Positives = 63/88 (71%)

Query: 236 VRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGAS 295
           VRL A  V P EALI FG   ++   +A I L+LS  G L EAA NLF+YMK AD SG S
Sbjct: 4   VRLNASAVEPGEALIAFGGAAVEGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVS 63

Query: 296 SIAFSSIPNHGLGIAINNRLERAAAPRN 323
           SIAFS IP+ GLG AIN+RL+RAAAPR+
Sbjct: 64  SIAFSPIPDDGLGEAINDRLQRAAAPRD 91


>gi|328675325|gb|AEB28000.1| Sua5/YciO/YrdC family protein [Francisella cf. novicida 3523]
          Length = 180

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 70/186 (37%), Gaps = 12/186 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    +     ++IPT+TVYGL+ +  +  A+ ++  +KKR +    I    +  
Sbjct: 3   TKDLDKIISEIIKDNVVSIPTDTVYGLSCNI-SKDAVAKVINLKKRDSSKGFIIISHNYE 61

Query: 69  MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            + K+A    LS             P T ++            T    T   R V     
Sbjct: 62  HLLKYADTTKLSNEQIDKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTNEIV 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             + E     +   SAN SG+  I N K I  +        +++  + +    S I+++ 
Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFNN---IYVLETEV-RSSQPSRIIDII 174

Query: 185 CEKKVR 190
             ++ R
Sbjct: 175 SGQQYR 180


>gi|195953581|ref|YP_002121871.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933193|gb|ACG57893.1| Sua5/YciO/YrdC/YwlC family protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 192

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 21/207 (10%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
             +  I +   +  A   L+  +PI  PT+T+YG+     N  A+  LY+I +RP+  P 
Sbjct: 3   FDVKKINEEGVIDSAVYILNKNMPICSPTDTIYGVLA-LDNEEALELLYKI-RRPSKKPF 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +  + DI+ ++ +             F P     V +L     +  +  A  K+  FR+P
Sbjct: 61  LRLLPDIAFLEMYG------------FKPNDK--VFELSKLEGVSIIIKAQDKSLGFRIP 106

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             GF K+L++    P+  PS N+ G+    +++  +S     EI L ID G  +    ST
Sbjct: 107 QKGFIKELLDKLQKPILAPSCNKEGEPPAKSIEEAIS-YFKDEISLYIDSGFIES-PPST 164

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAI 206
           IV ++ +  ++I+R G + I+ +K  I
Sbjct: 165 IVEIE-QNTIKIVREG-MSIDKVKELI 189


>gi|326563106|gb|EGE13379.1| YrdC-like protein [Moraxella catarrhalis 12P80B1]
          Length = 204

 Score =  105 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 72/198 (36%), Gaps = 19/198 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L     +L AG  +A P+E+V+GL  D+ N  AI ++  +K R     LI       
Sbjct: 10  ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69

Query: 69  MVKKHASVDPLSLHL--AKLF-------WPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +K    V   +  L   + F       +   LT ++ + S+  +  +   +  T   R+
Sbjct: 70  RLKSLIDVSHETSLLDYMQNFSDEFTHEYSRALTWLIPIQSSA-LPSVLIGSYDTLAVRI 128

Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 K L      P      L   S N S      N+   +      +I  +   G+ 
Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGDQIAYLDTDGLG 187

Query: 173 KIGLESTIVNVQCEKKVR 190
            +   S I ++     +R
Sbjct: 188 FV-QPSCIKDLLAGHILR 204


>gi|147841978|emb|CAN72004.1| hypothetical protein VITISV_012595 [Vitis vinifera]
          Length = 329

 Score =  105 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 30/216 (13%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR---------- 54
           S TDS  L    + L  G    IPT+TVY +    R+ +AI RL  + +           
Sbjct: 100 SGTDSWKLEPVADLLKEGAVGVIPTDTVYAIVCHLRSHSAIERLRRL-QLFPFMFSDVSV 158

Query: 55  PAMNPLICHVSDISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHP 106
             M PL      +  +  + +  P              K   PGP T      +      
Sbjct: 159 SLMQPLSILCRSLRDIDTYTTGFPCGIGQGQTNIFRAVKHCLPGPCTRYGTTTAKY---- 214

Query: 107 LSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IP 164
              A+ K    R+P     K +++    PL   S     +         ++     E + 
Sbjct: 215 ---ASRKNVGVRMPDDAICKAILQMMDAPLIATSVKSPKENEWMLDPITIADVYGPEGLD 271

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
            ++DGG+ ++   ST+V++   +  +I+R G    +
Sbjct: 272 FVVDGGV-RVADPSTVVDMTG-RTPKIIRQGKGPKQ 305


>gi|82697921|gb|ABB88998.1| hypothetical protein [uncultured crenarchaeote]
          Length = 167

 Score =  105 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 23/161 (14%)

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISV---------ELEYCVDETSTPQSPGMLKSHYA 231
           +++     V +LRPGGL +E ++  I             +  +   +  +SPGM   HY+
Sbjct: 2   IDMTSPVPV-LLRPGGLPLERIREVIDKISIHSSILNPKKDHLKSGNGYKSPGMKYRHYS 60

Query: 232 PRSQVRLR------------AIHVNPREALIRFGNVPIKNIEN-AIISLNLSKTGKLKEA 278
           P++ + L              +    R    +   +  K+I N  I  +        +  
Sbjct: 61  PKADLILVKGTKIKVRNKIVELARRMRNEQSKSVCIMTKSINNNYIADIVWFVGNDFETI 120

Query: 279 AFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAA 319
           +  LF   +  D+     I    +    LG+A+ +RL+RAA
Sbjct: 121 SRGLFEIFRYVDNHNIDVIIAEEMDCVDLGLAVMDRLKRAA 161


>gi|159462480|ref|XP_001689470.1| translation factor [Chlamydomonas reinhardtii]
 gi|158283458|gb|EDP09208.1| translation factor [Chlamydomonas reinhardtii]
          Length = 278

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 15/159 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
             +++  L +  + + AG    IPT+T+  +  D  N  A+ RLY +K+  A  PL    
Sbjct: 67  DASNAWRLDEVVQLIKAGGVGVIPTDTLPAIVCDLHNRDAVLRLYSVKEMDARKPLSILC 126

Query: 65  SDISMVKKHASVDPLS-----LHLAKLFWPGPLTLVLDLLSTTDIHPL-------STANL 112
             +S +  + +  P +      ++A+   PGP T VL   +T ++ P           + 
Sbjct: 127 PSLSTITTYTTGFPTTASANWFNVARRLLPGPYTFVLP--ATKNLPPQCIDFMSGKNIHR 184

Query: 113 KTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITN 150
           K+   R+P     + L++  G  L   S +    +S   
Sbjct: 185 KSVGVRMPADAVCQALLDGVGGALLCTSVHVPEVLSPDT 223


>gi|291333893|gb|ADD93573.1| hypothetical protein BU494 [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 167

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 6/167 (3%)

Query: 26  AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPLSLHLA 84
           A P E VYGL  D  +   + +L E+KKR     LI         +K+   +D   +   
Sbjct: 4   AYPCEGVYGLGCDPDSKKDVFKLCELKKRSIEKGLILISGVFEHFEKYINHLDKQDIDKL 63

Query: 85  KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRS 143
           K  WPGP T ++   +  ++      N      R        KL E  G  L   SAN S
Sbjct: 64  KRPWPGPHTWLV--RANENVPEWIKGNSDLVALRHSSHPEVIKLTEKIGKVLTSTSANIS 121

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
                 +   +  + I      +I G I   G  + I N++  + +R
Sbjct: 122 NDPPAMSADEV--TKIFGNEVTLIRGEIGNFGGATPIQNLETGEWIR 166


>gi|284046081|ref|YP_003396421.1| SUA5/yciO/yrdC domain protein [Conexibacter woesei DSM 14684]
 gi|283950302|gb|ADB53046.1| SUA5/yciO/yrdC domain protein [Conexibacter woesei DSM 14684]
          Length = 198

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/212 (22%), Positives = 79/212 (37%), Gaps = 19/212 (8%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M +++  D+ A          G     P +TVYGLA    N  AI R+Y +K R    P 
Sbjct: 1   MAVLTHADAVAFSDCVA---GGGVAVFPADTVYGLAAAPGNSAAIARIYALKGRAPEKPA 57

Query: 61  ICHVSDIS-MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                D    +     + P +    +   PG +TL+L   +   +             RV
Sbjct: 58  ATMWFDRDRALAALPPLGPRTRRACERLLPGGVTLLLPDPADPAVA---------LGVRV 108

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P        + T  HP+   SAN +G      +  +   +I     L++D G    G  S
Sbjct: 109 PRLEGALAALATVPHPVVQSSANAAGGADPRTLDEV-PQAIRAGADLVLDAGPLP-GAPS 166

Query: 179 TIVNVQ---CEKKVRILRPGGLEIETLKRAIS 207
           T+++++         I+R G +    +  A+ 
Sbjct: 167 TVIDLRRYERSGAWEIVRQGAVPRSVVASALG 198


>gi|309785606|ref|ZP_07680237.1| ribosome maturation factor [Shigella dysenteriae 1617]
 gi|308926726|gb|EFP72202.1| ribosome maturation factor [Shigella dysenteriae 1617]
          Length = 148

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 47  RLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTD 103
           RL E+K RP    LI   ++   +K +     L+    +     WPGP+T V    +TT 
Sbjct: 3   RLLELKLRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPATT- 61

Query: 104 IHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE 162
                T    +   RV        L + YG PL   SAN SG      V  +  +     
Sbjct: 62  -PRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAA 119

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVR 190
            P ++ G        S I +    +  R
Sbjct: 120 FP-VVPGETGGRLNPSEIRDALTGELFR 146


>gi|146328766|ref|YP_001209262.1| hypothetical protein DNO_0343 [Dichelobacter nodosus VCS1703A]
 gi|322967307|sp|A5EW39|RIMN_DICNV RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|146232236|gb|ABQ13214.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A]
          Length = 190

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 8/178 (4%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
             + AG   A PTE VYGL  +  +  A+  +  +K R A   LI    + +      S 
Sbjct: 18  RHIFAGGVFAYPTEAVYGLGGNPADERAVCEILRLKGRTAAKGLIMVAGNWAQCCGWVSG 77

Query: 77  DPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
                    + W G  P T ++        H ++TA+ KT   R+      ++L    G 
Sbjct: 78  VSKRDQAEMMDWAGDYPTTFIVYAGEKLCAH-VATADGKT-AIRISQHPLIQELCALIGQ 135

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           PL   SAN SGQ    +V  +       ++P+++ G +      S I++    + +R 
Sbjct: 136 PLLSTSANLSGQEPARSVAAV--RQYFPDLPMVL-GALGAAERPSRIIDWHSRQVIRA 190


>gi|254372137|ref|ZP_04987630.1| hypothetical protein FTCG_01279 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569868|gb|EDN35522.1| hypothetical protein FTCG_01279 [Francisella novicida GA99-3549]
          Length = 180

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 12/186 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    +     ++IPT+TVYGL+    +  A+ ++  +KKR +    I    D  
Sbjct: 3   TKDLNKIIGEITEDNVVSIPTDTVYGLSCGI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61

Query: 69  MVKKHASVDPLSLHLAKLFW---PGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            + K+A    LS           P P T ++            T    T   R V     
Sbjct: 62  HLLKYADTTKLSNEQIDKISSKQPQPTTWIVPGKKNIQ---WLTGGKTTIAIRLVTTEIV 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             + E     +   SAN SG+  I N K I  +        +++  + +    S I+++ 
Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDII 174

Query: 185 CEKKVR 190
             ++ R
Sbjct: 175 SGQQYR 180


>gi|254283092|ref|ZP_04958060.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR51-B]
 gi|219679295|gb|EED35644.1| SUA5/YciO/yrdC, N-terminal domain [gamma proteobacterium NOR51-B]
          Length = 185

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 6/179 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK-H 73
             E +  G  +A   E V+GL+ D  +  A+ ++  +K R     LI   +D   +    
Sbjct: 11  IAERILLGDVVACAAEGVWGLSCDPFDGDAVEQVLALKGRSVSKGLIVVAADEWQLAPVL 70

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYG 132
             +D        L WPG  T ++D           T +      RV        L    G
Sbjct: 71  GHLDRSLRQELSLSWPGANTWLVDNHGV--FPRWITGDSNEVAVRVTAAPALAALCRAVG 128

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
            PL   SAN +G     +   ++      ++P          G  STI   +  + +R 
Sbjct: 129 GPLVSTSANPAGADPAKSAFQVVR-YFGPDLPRAASAVNRNAG-PSTIRRAKTGEVIRA 185


>gi|18424373|ref|NP_568924.1| yrdC protein-related [Arabidopsis thaliana]
 gi|14190379|gb|AAK55670.1|AF378867_1 AT5g60590/muf9_240 [Arabidopsis thaliana]
 gi|15215871|gb|AAK91479.1| AT5g60590/muf9_240 [Arabidopsis thaliana]
 gi|332009968|gb|AED97351.1| DHBP synthase RibB-like alpha/beta domain-containing protein
           [Arabidopsis thaliana]
          Length = 164

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 51/87 (58%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A E + +   IA+PT+T+YG A D+ +  A+ R+YEIK R   +PL   V D+  +K+
Sbjct: 77  QEAIEAIKSEKVIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKR 136

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLL 99
            A+   L   L     PGP+TLVL  +
Sbjct: 137 VATTSHLPHGLLDSLLPGPVTLVLQRV 163


>gi|254368624|ref|ZP_04984640.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121527|gb|EDO65718.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 180

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    +     ++IPT+TVYGL+ +  +  A+ ++  +KKR +    I    D  
Sbjct: 3   TKDLNKIIGEITEDNVVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61

Query: 69  MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            + K+A +  LS             P T ++            T    T   R V     
Sbjct: 62  HLLKYADITKLSNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTTEIV 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             + E     +   SAN SG+  I N K I  +        +++  + +    S I+++ 
Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDII 174

Query: 185 CEKKVR 190
             ++ R
Sbjct: 175 SGQQYR 180


>gi|326562329|gb|EGE12655.1| YrdC-like protein [Moraxella catarrhalis 103P14B1]
 gi|326573494|gb|EGE23460.1| YrdC-like protein [Moraxella catarrhalis O35E]
 gi|326575533|gb|EGE25458.1| YrdC-like protein [Moraxella catarrhalis 101P30B1]
          Length = 204

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 19/198 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L     +L AG  +A P+E+V+GL  D+ N  AI ++  +K R     LI       
Sbjct: 10  ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69

Query: 69  MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +K    V   +  L   + F           LT ++ + S+  +  +   +  T   R+
Sbjct: 70  RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLIPIQSSA-LPSVLIGSYDTLAVRI 128

Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 K L      P      L   S N S      N+   +      +I  +   G+ 
Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGDQIAYLDTDGLG 187

Query: 173 KIGLESTIVNVQCEKKVR 190
            +   S I ++     +R
Sbjct: 188 FV-QPSCIKDLLAGHILR 204


>gi|291279580|ref|YP_003496415.1| hypothetical protein DEFDS_1190 [Deferribacter desulfuricans SSM1]
 gi|290754282|dbj|BAI80659.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 203

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 7/172 (4%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I   T  N ++          P   PT+T+YG+     N  A  ++YEIKKR      
Sbjct: 1   MIIYKETTQNFIKLINLSNKNNQPFIYPTDTIYGIGASYLNEEANNKIYEIKKRDKGKTF 60

Query: 61  ICHVSDISMVKKHAS---VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I  +  +  +               +   FWPG  T +         + +          
Sbjct: 61  ITLIGSVKQLYDLIDRSFFTNTHEKIINRFWPGSFTFIFFANKKLPNYLIQDGK---IAV 117

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           R+P             P+   S N S + ++ ++K I      K I  I+ G
Sbjct: 118 RLPSRKILSEAIKNTQPITSTSVNISDKKNLNDLKSIYK-YFNKNIKYILAG 168


>gi|89257161|ref|YP_514523.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315500|ref|YP_764223.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503386|ref|YP_001429451.1| YrdC domain-containing protein [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254366881|ref|ZP_04982919.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|290953359|ref|ZP_06557980.1| YrdC domain-containing protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313406|ref|ZP_06804013.1| YrdC domain-containing protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144992|emb|CAJ80352.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130399|gb|ABI83586.1| translation factor SUA5 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134252709|gb|EBA51803.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|156253989|gb|ABU62495.1| YrdC domain protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 180

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    +     ++IPT+TVYGL+ +  +  A+ ++  +KKR +    I    D  
Sbjct: 3   TKDLNKIIGKITEDNVVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61

Query: 69  MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            + K+A +  +S             P T ++            T    T   R V     
Sbjct: 62  HLLKYADITKISNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTTEIV 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             + E     +   SAN SG+  I N K I  +        +++  + +    S I+++ 
Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RFSQPSRIIDII 174

Query: 185 CEKKVR 190
             ++ R
Sbjct: 175 SGQQYR 180


>gi|303248116|ref|ZP_07334381.1| SUA5/yciO/yrdC domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490515|gb|EFL50423.1| SUA5/yciO/yrdC domain protein [Desulfovibrio fructosovorans JJ]
          Length = 212

 Score =  103 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 16/206 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            +  A   L AG  +  PTET + L   +    A+ R+  IK RPA  PL   V  +   
Sbjct: 5   DIAAAARGLMAGGCLVYPTETFFALGALATEAAALARIVSIKARPATKPLPLLVGGVGQ- 63

Query: 71  KKHASVDPLSL----------HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-V 119
              A++ P              LA+ FWPGPL+LV+       +  L          R  
Sbjct: 64  --FAAILPEGFAAGLLAADFDDLARRFWPGPLSLVVPCRDA--LPGLVKDASGRVSVRFT 119

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
           P      L    G  +   SAN SG     + + +  + +     ++ +G     G+ ST
Sbjct: 120 PHPTAAALCRLAGGAVVATSANVSGNPPAASPEALDPAVVAAADGVVTEGPAPGGGVAST 179

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRA 205
           +  +   +++RI R G   +  L+ A
Sbjct: 180 VAGLLGGRRLRIFREGATPLGALRAA 205


>gi|296114103|ref|YP_003628041.1| YrdC-like protein [Moraxella catarrhalis RH4]
 gi|322967338|sp|D5V9A9|RIMN_MORCR RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|295921797|gb|ADG62148.1| YrdC-like protein [Moraxella catarrhalis RH4]
          Length = 204

 Score =  103 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 19/198 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L     +L AG  +A P+E+V+GL  D+ N  AI ++  +K R     LI       
Sbjct: 10  ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69

Query: 69  MVKKHASVDPLS------LHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +K    V   +       + +  F       LT ++ + S+  +  +   +  T   R+
Sbjct: 70  RLKSLIDVSHETSLLDYMQNFSDEFTHKHSRALTWLMPIQSSV-LPSVLIGSHDTLAVRI 128

Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 K L      P      L   S N S      N+   +      +I   +D    
Sbjct: 129 TTHPLLKDLCHALISPTNPYGFLVSTSCNLSKSTPAKNLTQAMG-YFGDQIAY-LDTDGL 186

Query: 173 KIGLESTIVNVQCEKKVR 190
                S I ++     +R
Sbjct: 187 GFAQPSCIKDLLAGHILR 204


>gi|294789115|ref|ZP_06754354.1| protein RimN [Simonsiella muelleri ATCC 29453]
 gi|294482856|gb|EFG30544.1| protein RimN [Simonsiella muelleri ATCC 29453]
          Length = 191

 Score =  103 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 64/178 (35%), Gaps = 7/178 (3%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS- 75
             L  G  IA PTE  YGL     +   IRR+  IKKRP    LI    +   +      
Sbjct: 17  AHLKRGGVIAYPTEFCYGLGCLPNHIVGIRRILHIKKRPQHKGLITIGQNFRQLAPLLKR 76

Query: 76  VDPLSLHLAKLFWPG--PLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
           +    +   +  W    P TL+L   ++  +  L      +   RVP     +++     
Sbjct: 77  LPENDIQQYQQIWQTDPPTTLILPARASV-LPLLRGRRRGSLAVRVPRHDVARQVCWLAK 135

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           + L   S NR+ +      +            LII G        S I+N    +++R
Sbjct: 136 NALVSTSCNRAKKRPCRTERETRRQF--GRDVLIIGGKTGGYKQPSQIMNPFSAERLR 191


>gi|326571807|gb|EGE21813.1| YrdC-like protein [Moraxella catarrhalis BC7]
          Length = 204

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L     +L AG  +A P+E+V+GL  D+ N  AI ++  +K R     LI       
Sbjct: 10  ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69

Query: 69  MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +K    V   +  L   + F           LT ++ + S+  +  +   +  T   R+
Sbjct: 70  RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLIPIQSSA-LPSVLIGSYDTLAVRI 128

Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 K L      P      L   S N S      N+   +      +I   +D    
Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGNQIAY-LDTDGL 186

Query: 173 KIGLESTIVNVQCEKKVR 190
                S I ++     +R
Sbjct: 187 GFAQPSCIKDLLAGHILR 204


>gi|326561729|gb|EGE12064.1| YrdC-like protein [Moraxella catarrhalis 7169]
 gi|326569049|gb|EGE19118.1| YrdC-like protein [Moraxella catarrhalis BC1]
          Length = 204

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L     +L AG  +A P+E+V+GL  D+ N  AI ++  +K R     LI       
Sbjct: 10  ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAE 69

Query: 69  MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +K    V   +  L   + F           LT ++ + S+  +  +   +  T   R+
Sbjct: 70  RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLMPIQSSV-LPSVLIGSHDTLAVRI 128

Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 K L      P      L   S N S      N+   +      +I   +D    
Sbjct: 129 TTHPLLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGNQIAY-LDTDGL 186

Query: 173 KIGLESTIVNVQCEKKVR 190
                S I ++     +R
Sbjct: 187 GFAQPSCIKDLLAGHILR 204


>gi|255536893|ref|XP_002509513.1| sua5, putative [Ricinus communis]
 gi|223549412|gb|EEF50900.1| sua5, putative [Ricinus communis]
          Length = 326

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 42/227 (18%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA----------- 56
           DS  L    E L+ G    IPT+TVY +    ++ +A+ RL     R             
Sbjct: 83  DSWKLDPVIELLNEGAVGVIPTDTVYAMVCHLKSHSAVERL-----RSLYLMRLFLILLL 137

Query: 57  -------MNPLICHVSDISMVKKHASVDPLS--------LHLAKLFWPGPLTLVLDLLST 101
                  + PL      +  +  + +  P S            K   PGP T +L     
Sbjct: 138 SLQFCHFLQPLSILCRSLRDIDIYTTGFPRSDGQGHANIFRAVKHCLPGPYTFILTSSKE 197

Query: 102 TD---IHPLST----ANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKH 153
                +   +T    A+ K    R+P     + ++E    PL   S              
Sbjct: 198 LPKQCVRYGTTTAKYASRKNVGVRIPDDAICQAMLEKMDVPLISTSVKGPKDNEWMIDPV 257

Query: 154 ILSSSICKE-IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           +++ +   E +  ++DGG+ ++   ST+V++      +I+R G    
Sbjct: 258 VIADTYGPEGLDFVVDGGM-RVADPSTVVDMT-RVPPKIIRQGKGPK 302


>gi|302539279|ref|ZP_07291621.1| Sua5/YciO/YrdC family protein [Streptomyces sp. C]
 gi|302448174|gb|EFL19990.1| Sua5/YciO/YrdC family protein [Streptomyces sp. C]
          Length = 215

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 13/199 (6%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  + +PT   Y +  D+ NP A + + E K+RP   PL   + D +  +      P + 
Sbjct: 19  GRLVVVPTARWYMICADAANPDAYKAILEGKQRPKNKPLALVIPDQNRARDLLHFTPDAE 78

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            LA  FWPG L L L      D    +           P      L       LA  + N
Sbjct: 79  RLAAAFWPGDLALFLPWREPADAARYTVVGSPALTTHAPGPL-GDLARAVPGLLAATTVN 137

Query: 142 RSGQISITN---------VKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRIL 192
            SG     +         V+  L+ +      L++DGG+       TIV+   ++   ++
Sbjct: 138 VSGDAGPDDRGPAITLAEVEEFLTEA--GLDALVMDGGVCPAANHLTIVDCAGDQT-HLV 194

Query: 193 RPGGLEIETLKRAISVELE 211
           R G +    +  A+   L 
Sbjct: 195 RAGLVHPRAVASALGRTLP 213


>gi|87300985|ref|ZP_01083827.1| hypothetical protein WH5701_06035 [Synechococcus sp. WH 5701]
 gi|87284856|gb|EAQ76808.1| hypothetical protein WH5701_06035 [Synechococcus sp. WH 5701]
          Length = 213

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 12/191 (6%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            E++ AG P   PT+T+      +  P A  +++E+K RP+  PLI   S+   +     
Sbjct: 23  AEWILAGGPAIFPTDTL---PALAALPAAAGQIWELKSRPSNKPLILMGSEPETLFAALE 79

Query: 76  VDPLS--LHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           + P    L LA+  WPG LTLVL         + P   A       R+P C   ++L+  
Sbjct: 80  LSPRPQWLELAERCWPGALTLVLPARGAVVAALQPGVVAAEARLGLRIPACERARELLRR 139

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID-GGISKIGLESTIVNVQCEKKV 189
            G PLA  SANRSG             ++  ++P +         G  ST++        
Sbjct: 140 TG-PLATTSANRSGDPPCLTASQA--EAMFPQVPRLAPLPWPHPSGQGSTVLAWSLAGTW 196

Query: 190 RILRPGGLEIE 200
           ++LR G +  +
Sbjct: 197 QVLRSGAVMPD 207


>gi|254709555|ref|ZP_05171366.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
 gi|261317083|ref|ZP_05956280.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
 gi|261296306|gb|EEX99802.1| Sua5/YciO/YrdC/YwlC family protein [Brucella pinnipedialis B2/94]
          Length = 80

 Score =  102 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 54/80 (67%)

Query: 243 VNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
           + P EAL+ FG   +     A   LNLS TG L+EAA NLF++M+  D +GA++IA   I
Sbjct: 1   MKPGEALLAFGPHRVAESNRAAAVLNLSATGDLREAAANLFDFMRRLDATGAATIAVEPI 60

Query: 303 PNHGLGIAINNRLERAAAPR 322
           P  GLG AIN+RL+RAAAPR
Sbjct: 61  PLDGLGEAINDRLKRAAAPR 80


>gi|330470257|ref|YP_004408000.1| hypothetical protein VAB18032_01580 [Verrucosispora maris
           AB-18-032]
 gi|328813228|gb|AEB47400.1| hypothetical protein VAB18032_01580 [Verrucosispora maris
           AB-18-032]
          Length = 238

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 15/208 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTA---IRRLYEIKKRPAMNPLICHVS 65
           + AL      L+ G  + +P++T Y +A+   N  +   I  L     RP   P+    S
Sbjct: 21  TRALSLIVTRLNQGGFVLLPSDTCYSIALVPHNEDSWKFINSLLR---RPVDRPVSVAFS 77

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL--LSTTDIHPLSTANLKTACFRVPCGF 123
            +  V+ +  ++  +LHL + F PGP+TLV      +       + +  +T  FR+P   
Sbjct: 78  GLDQVRGYLELNATALHLVERFTPGPITLVCPANQRAHKFAAKSTGSPDRTLGFRIPDSK 137

Query: 124 T-KKLIETYGHPLAIPSANRSGQISITNVKHILS------SSICKEIPLIIDGGISKIGL 176
             + +      P+   +        + +    L       +++       ++G  S    
Sbjct: 138 IERDVASHARWPITTTAVRDKRDEPVQSFDEALKIVTAAAAAVGSARWHAVEGRDSFYSK 197

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204
            ST+V V    +V ++R G +  ET+++
Sbjct: 198 HSTVVRVDQSGEVGLIREGDIPFETIRQ 225


>gi|254375283|ref|ZP_04990763.1| hypothetical protein FTDG_01477 [Francisella novicida GA99-3548]
 gi|151573001|gb|EDN38655.1| hypothetical protein FTDG_01477 [Francisella novicida GA99-3548]
          Length = 180

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 13/182 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +   E +     ++IPT+TVYGL+    +  A+ ++  +KKR +    I    D   + K
Sbjct: 8   KIISEIIKDN-VVSIPTDTVYGLSCGI-SKAAVAKVINLKKRDSSKGFIIISHDHKHLLK 65

Query: 73  HASVDPLSLHLAKLFW---PGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
           +A    LS           P P T ++            T    T   R V       + 
Sbjct: 66  YADTTKLSNEQIDKISSKQPQPTTWIVPGKKNIQ---WLTGGKITIAIRLVTTEIVTYIC 122

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E     +   SAN SG+  I N K I  +        +++  + +    S I+++   ++
Sbjct: 123 ENINDAIISTSANISGEDFINNAKSISKTFNN---IYVLETEV-RSSQPSRIIDIISGQR 178

Query: 189 VR 190
            R
Sbjct: 179 YR 180


>gi|118496772|ref|YP_897822.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           novicida U112]
 gi|194324081|ref|ZP_03057856.1| YrdC domain protein, putative [Francisella tularensis subsp.
           novicida FTE]
 gi|208779956|ref|ZP_03247299.1| YrdC domain protein, putative [Francisella novicida FTG]
 gi|118422678|gb|ABK89068.1| Sua5/YciO/YrdC family protein [Francisella novicida U112]
 gi|194321978|gb|EDX19461.1| YrdC domain protein, putative [Francisella tularensis subsp.
           novicida FTE]
 gi|208743960|gb|EDZ90261.1| YrdC domain protein, putative [Francisella novicida FTG]
 gi|328676232|gb|AEB27102.1| Sua5 YciO YrdC YwlC family protein [Francisella cf. novicida Fx1]
          Length = 180

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 13/182 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +   E +     ++IPT+TVYGL+ +  +  A+ ++  +KKR +    I    D   + K
Sbjct: 8   KIISEIIKDN-VVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHKHLLK 65

Query: 73  HASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLI 128
           +A    LS             P T ++            T    T   R V       + 
Sbjct: 66  YADTTKLSNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTTEIVTYIC 122

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           E     +   SAN SG+  I N K I  +        +++  + +    S I+++   ++
Sbjct: 123 ENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDIISGQQ 178

Query: 189 VR 190
            R
Sbjct: 179 YR 180


>gi|326560686|gb|EGE11054.1| YrdC-like protein [Moraxella catarrhalis 46P47B1]
 gi|326574347|gb|EGE24290.1| YrdC-like protein [Moraxella catarrhalis CO72]
          Length = 204

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L     +L AG  +A P+E+V+GL  D+ N  AI ++  +K R     LI       
Sbjct: 10  ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAK 69

Query: 69  MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +K    V   +  L   + F           LT ++ + S+  +  +   +  T   R+
Sbjct: 70  RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLMPIQSSA-LPSVLIGSYDTLAVRI 128

Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 K L      P      L   S N S      N+   +      +I   +D    
Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGNQIAY-LDTDGL 186

Query: 173 KIGLESTIVNVQCEKKVR 190
                S I ++     +R
Sbjct: 187 GFAQPSCIKDLLAGHILR 204


>gi|134302710|ref|YP_001122678.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187932251|ref|YP_001892236.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|134050487|gb|ABO47558.1| Putative Sua5/YciO/YrdC family protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|187713160|gb|ACD31457.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 180

 Score =  102 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 12/186 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    +     ++IPT+TVYGL+ +  +  A+ ++  +KKR +    I    D  
Sbjct: 3   TKDLNKIIGEITEDNVVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61

Query: 69  MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            + K+A    LS             P T ++            T    T   R V     
Sbjct: 62  HLLKYADTTKLSNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGGKTTIAIRLVTTEIV 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             + E     +   SAN SG+  I N K I  +        +++  + +    S I+++ 
Sbjct: 119 TYICENINDAIISTSANISGEDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDII 174

Query: 185 CEKKVR 190
             ++ R
Sbjct: 175 SGQQYR 180


>gi|326571738|gb|EGE21751.1| YrdC-like protein [Moraxella catarrhalis BC8]
          Length = 204

 Score =  102 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 19/198 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++ L     +L AG  +A P+E+V+GL  D+ N  AI ++  +K R     LI       
Sbjct: 10  ADELDLVANYLQAGGVLAYPSESVWGLGCDAFNTDAINQIINLKHRDIGKGLIVLTDAAK 69

Query: 69  MVKKHASVDPLSLHL--AKLFWP-------GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +K    V   +  L   + F           LT ++ + S+  +  +   +  T   R+
Sbjct: 70  RLKSLIDVSHETSLLDYMQNFSDEFTHEHSRALTWLIPIQSSA-LPSVLIGSYDTLAVRI 128

Query: 120 PCGFTKK-LIETYGHP------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 K L      P      L   S N S      N+   +      +I   +D    
Sbjct: 129 TIHPVLKDLCHALISPTNPYGFLVSTSCNPSKSTPAKNLTQAMG-YFGNQIAY-LDTDGL 186

Query: 173 KIGLESTIVNVQCEKKVR 190
                S I ++     +R
Sbjct: 187 GFAQPSCIKDLLAGHILR 204


>gi|296122837|ref|YP_003630615.1| protein-tyrosine phosphatase, low molecular weight [Planctomyces
           limnophilus DSM 3776]
 gi|296015177|gb|ADG68416.1| Protein-tyrosine phosphatase, low molecular weight [Planctomyces
           limnophilus DSM 3776]
          Length = 383

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 110/297 (37%), Gaps = 35/297 (11%)

Query: 2   QIMSITDS-NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL------YEIKKR 54
           +I    D  + + + C+ L  G  + +PTET Y +A  + +   ++RL        +  +
Sbjct: 6   EIRRSDDPRDVIHRVCQSLAQGELVGLPTETTYTVAASALSEVGVQRLKALATELAVNHQ 65

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL---------LSTTDIH 105
           P    L+   +D   +            L +  WPGP+TL             L  T  H
Sbjct: 66  PPQFELLLKAAD-EALDYLVEQSRYGRKLIRRCWPGPVTLRFPKSHCGWFFEQLPETSRH 124

Query: 106 PLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
            L TA   T  FRVP       ++     PL   S  + G+  + + +          + 
Sbjct: 125 -LLTAPENTVSFRVPAHTLPADILNLLPGPLIALSEAQPGRPPLRHARDA-DQRFGNNLA 182

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQS 222
           LI+D G S+ G   T+V +       I  PG +   T+ R  S V L  C   T  +P +
Sbjct: 183 LIVDDGPSRYGEPGTVVQI-GNNDWNIAFPGVVSDRTMGRLASEVILFACTGNTCRSPMA 241

Query: 223 PGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279
             + +   A +           P E L+  G V    I +A ++  +      +  A
Sbjct: 242 EVLFRKLLAEKLSC--------PEEELVDHGYV----ILSAGLAAAIGAPANPEAIA 286


>gi|255082207|ref|XP_002508322.1| predicted protein [Micromonas sp. RCC299]
 gi|226523598|gb|ACO69580.1| predicted protein [Micromonas sp. RCC299]
          Length = 236

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 72/210 (34%), Gaps = 21/210 (10%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +D   L    + + AG    IPT++ Y   VD  +   ++ LY++K      P+    + 
Sbjct: 4   SDEWRLDDVADAIRAGSVGIIPTDSRYAFVVDLESRDGVQTLYDLKGAKDYKPMSILCAG 63

Query: 67  ISMVKKHASVDP--------LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN------- 111
            S + ++    P            LA+   PGP T +L+         L           
Sbjct: 64  FSDIDRYTQGFPDNVVAGRQQPFKLARKCLPGPYTFILNAGKDMPKVCLLDPRSKSKNCK 123

Query: 112 -LKTACFRVPCG-FTKKLIETYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLI 166
             KT   RVP    T  L+     PL   ++P+              ++     +     
Sbjct: 124 ARKTVGVRVPSHPVTAALLARLDRPLLCGSVPNLEADTYDDDVQDPVLMLDEYERRGLGF 183

Query: 167 IDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           +          ST++++   K  +++R G 
Sbjct: 184 LVDCGVMRNPGSTVIDLSKGKP-QLVRRGA 212


>gi|226330253|ref|ZP_03805771.1| hypothetical protein PROPEN_04166 [Proteus penneri ATCC 35198]
 gi|225201048|gb|EEG83402.1| hypothetical protein PROPEN_04166 [Proteus penneri ATCC 35198]
          Length = 104

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  + ++ + L  G  +  PT++ Y +     N  A+ R+  I++    +       D+S
Sbjct: 14  ARLIEQSADILRKGGVVIYPTDSGYAIGCCLENKDAMTRICRIRQLDKKHNFTLMCRDLS 73

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLD 97
            +  +A VD +   L K   PG  T  L 
Sbjct: 74  EIANYAYVDNVVFRLIKNNTPGNYTFYLK 102


>gi|22299666|ref|NP_682913.1| hypothetical protein tll2123 [Thermosynechococcus elongatus BP-1]
 gi|22295850|dbj|BAC09675.1| tll2123 [Thermosynechococcus elongatus BP-1]
          Length = 197

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 75/205 (36%), Gaps = 15/205 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGL-PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M+ M+     AL      +  G   I+ PT+TV  LA           +Y  K+R    P
Sbjct: 1   MRTMAQVSMAAL---VAAVRTGNWLISFPTDTVPALASRCDRGE---LIYTAKERQPDKP 54

Query: 60  LICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
           LI   ++   +                +A  +WPG +TLVL          L+     T 
Sbjct: 55  LILMGANPEQLWPFVRGSAAEWEQWSAMAARYWPGAVTLVLPAAELP--PGLNPLGTGTI 112

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG 175
             RVP     + +     PLA  S NRSGQ         ++    + + L          
Sbjct: 113 GLRVPDWPPAQALLQQTGPLATTSINRSGQP-PLIELGAIAREFPQVLTLHPWQLPPSPP 171

Query: 176 LESTIVNVQCEKKVRILRPGGLEIE 200
             ST+V  Q   +  ILR G ++IE
Sbjct: 172 QPSTVVQWQS-GQWHILRQGRVQIE 195


>gi|170078339|ref|YP_001734977.1| YrdC domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169886008|gb|ACA99721.1| yrdC domain protein [Synechococcus sp. PCC 7002]
          Length = 211

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 6/206 (2%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M         A+    E LD G  + I T+ VY L  ++ NP A  +++E+K      PL
Sbjct: 1   MATFLPKSPQAIAPIIEQLDRGQVVVIHTDVVYLLIANALNPQATNQIHELKGWEPRKPL 60

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              ++    V ++  +   +  L   F P P++++L      ++    TA         P
Sbjct: 61  TLLLTPPK-VPEYGILSAEAQTLVNQF-PYPISVILPHR--NNLAEGVTAGHSEVFVSCP 116

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             F   L      P+A  +A+   ++   + K    +   +++ LIIDGG +K  + +T+
Sbjct: 117 DQFIYDLAAQAPFPIAAGTASLGSEMRANDAKTA-EAFFGQQVSLIIDGGKAKERIRTTL 175

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAI 206
           ++        IL  G +  + L+  I
Sbjct: 176 IDCHL-PLPTILNFGLVSFDDLREII 200


>gi|229495538|ref|ZP_04389271.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317521|gb|EEN83421.1| Sua5/YciO/YrdC/YwlC family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 203

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSD 66
           + + L K    +  G  I  PT   Y     +    AI  +  +K   P  + L     D
Sbjct: 11  NWDLLHKIAAQIRDGAIIIYPTGIGYSYGCSAYKARAIEEVCRLKGVDPKKHRLTIMCRD 70

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
           ++   ++A VD  S    +     P+T +L   +T+++  L     +    R+P      
Sbjct: 71  LADFTRYAKVDNTSFRYIREHEKEPITYLLP--ATSELPKLLINKHE-VGLRLPLHPLAT 127

Query: 126 KLIETYGHPLAIPSAN-RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
            L+E    PL   S   +           ++      E+  I+DGG   +G  + IV++ 
Sbjct: 128 LLLEVLDEPLLTASLPTKKEDPEYRTDPELIDELYGHEVYTILDGG-CALGGTTAIVSLT 186

Query: 185 CEKKVRILRPGGLE 198
             +   I+RP G+ 
Sbjct: 187 QGEP-EIVRPAGIP 199


>gi|330939568|gb|EGH42885.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 95

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 14 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 73

Query: 69 MVKKHASVDPLSLHLAKLFWPG 90
           +   A VD  +    K   PG
Sbjct: 74 QLGLFAKVDTGAFRALKTLTPG 95


>gi|56707347|ref|YP_169243.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669817|ref|YP_666374.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456418|ref|ZP_03664891.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370027|ref|ZP_04986034.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874184|ref|ZP_05246894.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56603839|emb|CAG44815.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320150|emb|CAL08198.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568272|gb|EDN33926.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840183|gb|EET18619.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158479|gb|ADA77870.1| Sua5/YciO/YrdC family protein [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 180

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 12/186 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +  L K    +     ++IPT+TVYGL+ +  +  A+ ++  +KKR +    I    D  
Sbjct: 3   TKDLNKIIGEITEDNVVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHK 61

Query: 69  MVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            + K+A    LS             P T ++            T +  T   R V     
Sbjct: 62  HLLKYADTTKLSNEQINKISSKQAQPTTWIVPGKKDIQ---WLTGDKTTIAIRLVTTEIV 118

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
             + E     +   SAN SG+  I N K I  +        +++  + +    S I+++ 
Sbjct: 119 TYICENINDAIISTSANISGKDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDII 174

Query: 185 CEKKVR 190
             ++ R
Sbjct: 175 SGQQYR 180


>gi|15806862|ref|NP_295585.1| SUA5-like protein [Deinococcus radiodurans R1]
 gi|6459642|gb|AAF11415.1|AE002026_3 SUA5-related protein [Deinococcus radiodurans R1]
          Length = 230

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/211 (28%), Positives = 79/211 (37%), Gaps = 18/211 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
               LR A + LD G  +A PTETV+GL   +  P A   LY  K R A  PL       
Sbjct: 19  PPELLRAAADVLDRGGVVAYPTETVWGL---AARPAAAAELYRRKGREANKPLQLSCPGA 75

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT----DIHPLSTANLKTACFRVPCG- 122
           +     A   P  L L+   WPGPLT+V                + A       RVP   
Sbjct: 76  AAALALAVPSPALLALS-ACWPGPLTVVTPGRPERLEDWGAGAEAVAPDGWLGLRVPAHP 134

Query: 123 FTKKLIETYGHPLAIPSANRSG----QISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
               L+   G PLA  S N SG            + L+     E     D   +     S
Sbjct: 135 VALALLSAAGGPLATTSLNPSGQAAATTQAEAEAYALADLTLPEPAGTADRPPAA---PS 191

Query: 179 TIVNV--QCEKKVRILRPGGLEIETLKRAIS 207
           T++ +  + E   R+LR GGL    L   ++
Sbjct: 192 TVLRLPAEGEDTARMLRLGGLSQADLAARLA 222


>gi|124023897|ref|YP_001018204.1| translation factor (SUA5) [Prochlorococcus marinus str. MIT 9303]
 gi|123964183|gb|ABM78939.1| Putative translation factor (SUA5) [Prochlorococcus marinus str.
           MIT 9303]
          Length = 196

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 17/201 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           ++ D++AL      L AG    +PT+T+      +  P    +L+ +K+R A  PLI   
Sbjct: 7   AVLDASAL---ASRLHAGSAALLPTDTLP---ALAAAPVHAAQLWTMKQRSADKPLILMA 60

Query: 65  SDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           +    +   A V PL+L     +A+ +WPG LTLV+   ++  +         T   RVP
Sbjct: 61  ATPEEL--LAHVSPLALEDAWSMARRYWPGALTLVVP--ASGVLVEALNPGAFTLGLRVP 116

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            CG  + L++  G PLA  SAN SG  + T       +       L      +  GL ST
Sbjct: 117 DCGVIRCLLKQSG-PLATTSANLSGA-APTFSADAAHTCFPGLPLLGPLPWPTPSGLAST 174

Query: 180 IVNVQCEKKVRILRPGGLEIE 200
           +V  Q   +   LR G + +E
Sbjct: 175 VVAWQGSGRWHELRRGAVVLE 195


>gi|194477096|ref|YP_002049275.1| Putative translation factor (SUA5) [Paulinella chromatophora]
 gi|171192103|gb|ACB43065.1| Putative translation factor (SUA5) [Paulinella chromatophora]
          Length = 203

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 13/187 (6%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            + + AG P   PT+T+  +A         ++++E+K R    PLI    +  ++ K  +
Sbjct: 11  ADRICAGSPGIFPTDTLPAIATIPGKA---KQIWELKHRIKSKPLILMGHEAELLFKFIA 67

Query: 76  VDPLS--LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYG 132
              LS    + + +WPG LT+++   ++  I         +   RVP C  T  L+   G
Sbjct: 68  QPILSDCYKVGERYWPGALTIIVP--ASGLIVKELNPLGNSIGLRVPACRSTLDLLSRTG 125

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLI--IDGGISKIGLESTIVNVQCEKKVR 190
            PLA  SAN SG+       H +S+   K IPL+  +    + I   STIV +    K +
Sbjct: 126 -PLATSSANISGK-YPYLFPHQVSADF-KNIPLLGPLPWPKNTITTGSTIVELYGSGKWK 182

Query: 191 ILRPGGL 197
           I R G +
Sbjct: 183 IHRQGTV 189


>gi|325971179|ref|YP_004247370.1| SUA5/yciO/yrdC domain [Spirochaeta sp. Buddy]
 gi|324026417|gb|ADY13176.1| SUA5/yciO/yrdC domain [Spirochaeta sp. Buddy]
          Length = 189

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 86/202 (42%), Gaps = 21/202 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           Q++  T    + +    L     + +P +T+YGL+      T++ +L  +K++   +  I
Sbjct: 6   QLLYKTVDTTVDQVVRLLQENKILVLPCDTIYGLSGQYN--TSLEKLCSLKQKKGQHQFI 63

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              + +        + P+     +  WP  LT++L+          +     +   RVP 
Sbjct: 64  VL-ATLMQAHHLCKIPPV----LEKHWPCALTVILE----------NQNGEGSTAIRVPD 108

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             FT++++   G P+   S N +G  +IT++  I+ +   K   ++ID    +    ST+
Sbjct: 109 DPFTQQILNKLGKPIYSTSVNDAG-FAITSITDIIFTYKQKVQAIVIDPDRGRD-TPSTL 166

Query: 181 VNVQCEKKVRILRPGGLEIETL 202
           ++   E    ++R G  +   L
Sbjct: 167 IDCTKE-PYELIRCGAYDASAL 187


>gi|269467898|gb|EEZ79637.1| translation factor SUA5 [uncultured SUP05 cluster bacterium]
          Length = 178

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 7/179 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R A E+L AG  I+ PT+T+ GL+   R   ++ RL +IK+R A   LI   SD+  ++ 
Sbjct: 6   RLASEYLKAGGVISHPTDTIQGLSCLPRFEHSMHRLLKIKQRSAAKGLILLASDVRYLED 65

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           + +   +S   +      P T +L   +++ I  L T    T   R+       +L +  
Sbjct: 66  YVA--DVSQLKSIKNTGAPTTYLL--KASSKISKLLTGEFSTVAIRLTDNALIAELCKAT 121

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              L   SAN +G+ S T+V + L+     E+  +I    +     S I+N++  +++R
Sbjct: 122 NSALVSSSANTTGKHSATSVLN-LNVFFKGELDFMI-APKNYNNSPSRIINLETGERLR 178


>gi|294790664|ref|ZP_06755822.1| Sua5/YciO/YrdC/YwlC family protein [Scardovia inopinata F0304]
 gi|294458561|gb|EFG26914.1| Sua5/YciO/YrdC/YwlC family protein [Scardovia inopinata F0304]
          Length = 322

 Score = 99.8 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 5/117 (4%)

Query: 2   QIMSITDSNALRKAC----EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAM 57
           +I+ + D ++L K      E + +G    IPT+TVYGL  D  + +A++ ++  K RP  
Sbjct: 4   KILPLYDGDSLEKTVQTVTEAIRSGKTAVIPTDTVYGLVADPLSVSAVQGIFRAKHRPPE 63

Query: 58  NPLICHVSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
             +    S+    +K   + P +   L  +F PG L LV  ++ST  +    T +  
Sbjct: 64  KTVQILCSNPDQARKLGLIIPHIYEQLLDIFPPGSLCLVCSVISTCPLVTTRTVSGG 120



 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
           P     L+T   R P     + I     PLA  SANRSG+ + T     L   +  E  +
Sbjct: 181 PGRNPILRTQAVRFPSDSATQAILNQTGPLAASSANRSGRQAATTAAEAL-DQLGDEPAV 239

Query: 166 IIDGGISKIGLESTIVNV 183
             DGG+S     ST++++
Sbjct: 240 YADGGVSSGPAASTVISL 257


>gi|54113065|gb|AAV29166.1| NT02FT0158 [synthetic construct]
          Length = 180

 Score = 99.8 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
            ++IPT+TVYGL+ +  +  A+ ++  +KKR +    I    D   + K+A    LS   
Sbjct: 18  VVSIPTDTVYGLSCNI-SKAAVAKVINLKKRDSSKGFIIISHDHKHLLKYADTTKLSNEQ 76

Query: 84  AKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPLAIPS 139
                     P T ++            T +  T   R V       + E     +   S
Sbjct: 77  INKISSKQAQPTTWIVPGKKDIQ---WLTGDKTTIAIRLVTTEIVTYICENINDAIISTS 133

Query: 140 ANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           AN SG+  I N K I  +        +++  + +    S I+++   ++ R
Sbjct: 134 ANISGKDFINNAKSISKTFDN---IYVLETEV-RSSQPSRIIDIISGQQYR 180


>gi|33863926|ref|NP_895486.1| hypothetical protein PMT1659 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635510|emb|CAE21834.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 196

 Score = 99.4 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 17/206 (8%)

Query: 1   MQIMS--ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           M ++   + D++AL      L AG    +PT+T+      +  P    +L+ IK+R A  
Sbjct: 1   MAVLPSAVLDASAL---ASRLHAGSAALLPTDTLP---ALAAAPVHAAQLWTIKQRSADK 54

Query: 59  PLICHVSDISMVKKHASVDPLSLH----LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           PLI   +    +   A V PL+L     +A+ +WPG LTLV+   ++  +         T
Sbjct: 55  PLILMGATPEEL--LAHVLPLALEDVWSMARRYWPGALTLVVP--ASGVLVEALNPGAFT 110

Query: 115 ACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              RVP     + +     PLA  SAN SG  + T       +       L      +  
Sbjct: 111 LGLRVPDCGMLRTLLKQSGPLATTSANLSGS-APTFSADAAHTCFPGLPLLGPLPWPTPS 169

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIE 200
           GL ST+V  Q   +   LR G + +E
Sbjct: 170 GLASTVVAWQGAGRWHELRRGAVVLE 195


>gi|47222934|emb|CAF99090.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 472

 Score = 99.4 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 13/166 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           ++++++  E + +G    +PT+TVY L      P A+ + Y +KK+    P+   +S I 
Sbjct: 308 ASSVQQIAEIMKSGGICGMPTDTVYVLVAACNRPEAVVKAYNVKKQAQDRPMSMWISSIQ 367

Query: 69  MVKKHAS-VDPLSLHLAKLFWP-----GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            ++     + PL L   +  WP     GP   +  L   +          ++   R P C
Sbjct: 368 QLEPVRHLLSPLLLDFMEAAWPSSISMGPWMDIFGLGDASR----HIGTPQSIAIRNPDC 423

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                LI   G P+A+ SAN +G+   T+   +  + +  ++   I
Sbjct: 424 SVATYLISKVG-PIAVTSANPTGEADTTHHNQVY-AKLGNKVSGRI 467


>gi|167950067|ref|ZP_02537141.1| putative translation factor (SUA5) [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 161

 Score = 99.0 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 2/144 (1%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           L     +  A+ R+  I++    +       D++ +  +A V+     L K   PGP T 
Sbjct: 14  LGCHIGDKGAMERIRRIRRLDDKHNFTLVCRDLTEIASYAKVNNRDYRLLKNLTPGPYTF 73

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKH 153
           +L          L  A  KT   RVP       L+     P+   +    G        +
Sbjct: 74  ILKATKQVP-RRLQHAKRKTIGIRVPDNRIVDALLTALAEPIMSSTLVLPGDEMPLTDPY 132

Query: 154 ILSSSICKEIPLIIDGGISKIGLE 177
            +   I  E+ LIIDGG  +    
Sbjct: 133 EMRQLIDHEVDLIIDGGYWRFRRP 156


>gi|289569313|ref|ZP_06449540.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289543067|gb|EFD46715.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 136

 Score = 98.6 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 4/134 (2%)

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
           +   +  L + FWPG L+LV+    +            T   R+P       +     P+
Sbjct: 1   MPDGARELIRAFWPGALSLVVVQAPSLQW--DLGDAHGTVMLRMPLHPVAIELLREVGPM 58

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
           A+ SAN SG     + +    S +   + + +D G S+    STIV++      R+LR G
Sbjct: 59  AVSSANISGHPPPVDAEQA-RSQLGDHVAVYLDAGPSEQQAGSTIVDLTGATP-RVLRQG 116

Query: 196 GLEIETLKRAISVE 209
            +  E +   + V+
Sbjct: 117 PVSTERIAEVLGVD 130


>gi|330721253|gb|EGG99349.1| YciO family [gamma proteobacterium IMCC2047]
          Length = 132

 Score = 98.6 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLI 128
           +  +A VD  +  + K   PG  T +L+  S      L     +T   R+P    T+ L+
Sbjct: 1   MSTYAKVDNSTYRILKAHTPGAYTFILNATSEVP-RRLLHPKRRTIGLRLPEHNITQALL 59

Query: 129 ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
           +  G PL   S    G        + + +++  ++ LIIDGG    G+E+T V    ++ 
Sbjct: 60  DQLGEPLMSTSLIMPGDEIPMTDPYDIRATLEHQVDLIIDGGYC--GMEATSVINMTDEV 117

Query: 189 VRILRPGGLEIETLK 203
             ++R G  ++   +
Sbjct: 118 PEVVRFGMGDVSDFQ 132


>gi|163750846|ref|ZP_02158080.1| hydrogenase maturation protein HypF [Shewanella benthica KT99]
 gi|161329404|gb|EDQ00399.1| hydrogenase maturation protein HypF [Shewanella benthica KT99]
          Length = 610

 Score = 97.4 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 22/189 (11%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL +  E L  G  IAI      GL       D+ N  A+ RL E K+RP+  PL   VS
Sbjct: 47  ALTETVERLSKGEIIAIK-----GLGGFHLVCDATNHDAVERLRERKRRPS-KPLAVMVS 100

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT-DIHPLSTANLKTACFRVP-CGF 123
            + M K   +               P+T++    S T ++ P     +      +P    
Sbjct: 101 GLEMAKSIVTGSQFEWDQL-CALERPITIMNKNRSNTLNLSPAVAPGIDKLGVFLPYTPL 159

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L++    P+   SANRSG+  I +   I+ + +   +  I+D           I+N 
Sbjct: 160 HSLLLKALDTPIVATSANRSGEPIICDANEII-AQLADVVDSILDHNRP-------IINA 211

Query: 184 QCEKKVRIL 192
             +  ++ +
Sbjct: 212 CDDSVIQCV 220


>gi|31544343|ref|NP_852921.1| Putative translation factor/ribosome maturation factor [Mycoplasma
           gallisepticum str. R(low)]
 gi|31541187|gb|AAP56489.1| Putative translation factor/ribosome maturation factor (Sua5)
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930383|gb|ADC30322.1| Putative translation factor/ribosome maturation factor (Sua5)
           [Mycoplasma gallisepticum str. R(high)]
          Length = 182

 Score = 97.1 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 33/209 (15%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+++         +  + ++    + +PT+TV+G+   S+N     ++Y+ KKR     L
Sbjct: 1   MKVLEF--EKDFDEIVKAINDDKLVILPTDTVFGVICKSKN-----KIYDFKKRDLNKKL 53

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I   SD+         D L L LA  FWPG LTL+ +  S                +R+P
Sbjct: 54  IYFCSDVEQTN---INDKLFLDLANRFWPGKLTLIYNKES----------------YRIP 94

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS-SICKEIPLIIDGGISKIGLES 178
              +  K+ +  G  +   SAN S        +   +     +   +++  G +     S
Sbjct: 95  NSPYILKIAKICGK-IYSSSANISDLNPYKTWEQYYNDPYFNQNNDVVVIKGETTSEQGS 153

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           TI ++      +ILR G L  ++LK  ++
Sbjct: 154 TIYDLDSN---KILREGELS-QSLKEFLA 178


>gi|254468103|ref|ZP_05081509.1| putative yrdC domain protein [beta proteobacterium KB13]
 gi|207086913|gb|EDZ64196.1| putative yrdC domain protein [beta proteobacterium KB13]
          Length = 179

 Score = 96.7 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 5/170 (2%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  +  PTE+ +GL    +N  A++++  IKKR      +     +    ++ S+   +L
Sbjct: 13  GKILIHPTESCFGLGCHPKNINALKKILIIKKRSKNKSFLLISDKVQKFFRYVSLSEKNL 72

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
                 WP   + +           L +   +    R+P     K+ +E    P+   SA
Sbjct: 73  QHISD-WPKHTSYLF--KKNLRSPMLLSPKKEKIGCRIPDHKKIKRTLENLNFPITSTSA 129

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           N SGQIS+   +H       K   +I++  +      STI++ + +K +R
Sbjct: 130 NFSGQISLKFWRHCCRKFSSKSC-IIMNERVGNYKRPSTIIDFETKKIIR 178


>gi|307110462|gb|EFN58698.1| hypothetical protein CHLNCDRAFT_17175 [Chlorella variabilis]
          Length = 215

 Score = 96.7 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 77/209 (36%), Gaps = 21/209 (10%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETV-YGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHV 64
           +D+  L    E L  G    IPT T       D  N +A+ +L EIK  R +   +    
Sbjct: 9   SDAWRLEPVIEALKEGAVGIIPTGTCNLAFVCDLGNRSAVEKLLEIKGARGSQR-MSILC 67

Query: 65  SDISMVKKH--------ASVDPLSLHLAKLFWPGPLTLVLDL-----LSTTDIHPLSTAN 111
             +  V  +        A   P    L K   PGP T +L        + T++    +  
Sbjct: 68  RSLQDVDAYTQGWPPSRAPGQPDMFKLVKRVLPGPYTFILLAGKELPKALTNVDKGKSKK 127

Query: 112 LKTACFRVP-CGFTKKLIETYGHPLA-IPSANRSGQISIT-NVKHILSSSICKE-IPLII 167
            +    R+P     + +++    PL    +A   G  +I      +L     +  +  ++
Sbjct: 128 RREVGVRLPDDAVAQAILQQLDRPLLCSTAATGPGDGAIMGQDAAVLMDRYGRAGLDFVV 187

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGG 196
           D G  ++   ST+++    + V + +  G
Sbjct: 188 DAGP-RLAEGSTVIDCTGAEPVVLRQGKG 215


>gi|284931148|gb|ADC31086.1| Putative translation factor/ribosome maturation factor (Sua5)
           [Mycoplasma gallisepticum str. F]
          Length = 182

 Score = 96.7 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 33/209 (15%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M+++         +  + ++    + +PT+TV+G+   S+N     ++Y+ KKR     L
Sbjct: 1   MKVLEF--ERDFDEIVKAINDDKLVILPTDTVFGVICKSKN-----KIYDFKKRDLNKKL 53

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
           I   SD+         D L L LA  FWPG LTL+ +  S                +R+P
Sbjct: 54  IYFCSDVEQTN---INDKLFLDLANRFWPGKLTLIYNKES----------------YRIP 94

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIIDGGISKIGLES 178
              +  K+ +  G  +   SAN S        +   + S   +   +++  G +     S
Sbjct: 95  NSPYILKIAKICGK-IYSSSANISNLNPYKTWEQYYNDSYFNQNNDVVLIRGETTSEQGS 153

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           TI ++      +ILR G L  ++LK  ++
Sbjct: 154 TIYDLDSN---KILREGELS-QSLKEFLA 178


>gi|253574246|ref|ZP_04851588.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846723|gb|EES74729.1| Sua5/YciO/YrdC/YwlC family protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 80

 Score = 96.3 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 261 ENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             A  +L+L +  +L+ AA  L+  ++  D+ G + I   + P  GLG A+ NRL +AA 
Sbjct: 6   YRADCALSLGREDELETAAHRLYAALRRFDECGVTYILAEACPEEGLGSAVMNRLLKAAG 65

Query: 321 PR 322
            R
Sbjct: 66  HR 67


>gi|27904913|ref|NP_778039.1| hypothetical protein bbp438 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|46397179|sp|Q89A89|RIMN_BUCBP RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|27904311|gb|AAO27144.1| conserved hypothetical protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 186

 Score = 95.9 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 14/194 (7%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M I+S      L +  + L   L IA PTE+V GL  +  +  A++ L ++KKR      
Sbjct: 1   MNILS------LSECVDRLRKNLVIAYPTESVLGLGCNPESIDAVKVLLKLKKRKLNKGF 54

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           I   S  + ++ + S   LS++  K+    WP  +T +L   + + +    T        
Sbjct: 55  ILVASHFNQIRSYISESKLSIYHKKILYSSWPDTITYLLP--AKSFVPDWLTGRSNFLGI 112

Query: 118 RVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
           R+       KL   +G  +   SAN SG+      +  L          I+ G +     
Sbjct: 113 RISAHNGINKLCSAFGKAIISTSANISGRNPCRTYEEFLKQF--GTTVPILCGPLGTRKN 170

Query: 177 ESTIVNVQCEKKVR 190
            S I+N+     +R
Sbjct: 171 PSKILNIINGSLIR 184


>gi|315426713|dbj|BAJ48338.1| translation factor [Candidatus Caldiarchaeum subterraneum]
          Length = 132

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPL 135
               L  A   WPG +T+V+     T++  L TA  KT   R+P      LI +    PL
Sbjct: 3   TEEELEAAIRLWPGAVTIVM--AKKTELPELVTAGEKTVGVRMPAHVVPLLIMQKAHRPL 60

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
              SAN S + S T +  I SS + K + +++D G +   L ST+V +Q + +V +LR G
Sbjct: 61  VGTSANISDEPSATTIDQIPSSVLEK-VDVVVDAGRTHHLLPSTVVKIQ-DGQVVVLREG 118

Query: 196 GLEIETLKRAISVE 209
            L  E +++ I + 
Sbjct: 119 VLSREEIEKRIGLR 132


>gi|326513584|dbj|BAJ87811.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 270

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 15/142 (10%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           L    + +++G    IPT+TVY +  D  N  +I RL  IK      PL      +  + 
Sbjct: 108 LDPVVDLINSGAVGVIPTDTVYSIVCDLSNNDSIERLRRIKGIVNSKPLSILCRSLRDID 167

Query: 72  KHASVDPLS--------LHLAKLFWPGPLTLVLDLLSTTDIHPLST------ANLKTACF 117
            + +  P              K   PGP T +L          +        A  +    
Sbjct: 168 TYTTGFPQGTNQGQANIFRAVKRILPGPYTFILPATKELPKQCIKHGSSTRYAKRRQVGV 227

Query: 118 RVP-CGFTKKLIETYGHPLAIP 138
           R+P     + +++    PL   
Sbjct: 228 RMPDDPICQAILQNLEEPLICT 249


>gi|295698621|ref|YP_003603276.1| protein YrdC [Candidatus Riesia pediculicola USDA]
 gi|322967359|sp|D4G8K6|RIMN_RIEPU RecName: Full=tRNA threonylcarbamoyladenosine biosynthesis protein
           RimN; AltName: Full=t(6)A37 threonylcarbamoyladenosine
           biosynthesis protein RimN
 gi|291157258|gb|ADD79703.1| protein YrdC [Candidatus Riesia pediculicola USDA]
          Length = 187

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 11/144 (7%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
            L  G  IA P E+V+ L  D  N   I++L  +K R      I    +   + K+    
Sbjct: 12  ALKNGEIIAYPAESVFSLGCDPDNDKTIQKLLTLKNRSWEKGFILVSDNYDKLTKYIDDK 71

Query: 78  PLSLHLAKL------FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIET 130
            L+    ++      F+P   T V+   +   +  L T   K+   R+    + K +   
Sbjct: 72  KLTKFQKRIISFHDTFFPR--TWVVP--AKKCVSKLITGQFKSIAIRISRFEYIKNICLN 127

Query: 131 YGHPLAIPSANRSGQISITNVKHI 154
           YG P+   SAN S          +
Sbjct: 128 YGKPIISTSANISNDAPCRTKNEV 151


>gi|157375042|ref|YP_001473642.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sediminis
           HAW-EB3]
 gi|157317416|gb|ABV36514.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sediminis
           HAW-EB3]
          Length = 783

 Score = 95.1 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL +  + L  G  +AI      GL       D+ N  A++RL E K+RP   PL   VS
Sbjct: 220 ALTETVQRLLQGEIVAIK-----GLGGFHLVCDATNHDAVQRLRERKRRP-GKPLAVMVS 273

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVP-CGF 123
            + M K   +               P+T++    S T ++ P     +      +P    
Sbjct: 274 SLEMAKSIVTGSQFEWDQLTSI-ERPITIMTKNRSNTVNLSPAIAPGIDKLGVFLPYTPL 332

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L++    P+   SANRSG+  I + K I+ + + + +  I+D           I+N 
Sbjct: 333 HSLLLKELDIPIVATSANRSGEPIICDGKEII-AQLSEVVDSILDHNRP-------IINA 384

Query: 184 QCEKKVRIL 192
             +  ++ +
Sbjct: 385 CDDSVIQCI 393


>gi|281207352|gb|EFA81535.1| brix domain-containing protein [Polysphondylium pallidum PN500]
          Length = 592

 Score = 94.7 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           I+   D   + +A   + +G  ++ PTETVYGL  ++ +  A+  ++  K RP  +P+I 
Sbjct: 88  IVDSLDDQVMLEAANKIKSGGLVSFPTETVYGLGANAFDTDAVLSIFTAKGRPLTDPVIV 147

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD 103
           H+ +   VK+H         L   + P     +L  + T D
Sbjct: 148 HLQN--SVKQHQQGQEAPGQLLTHYAPDIQAYILKDIITDD 186



 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 38/142 (26%)

Query: 221 QSPGMLKSHYAPRSQVRLRAIHVNPR-------------------------------EAL 249
           ++PG L +HYAP  Q  +    +                                     
Sbjct: 161 EAPGQLLTHYAPDIQAYILKDIITDDQNNNSNLNSNNSNNSNNNNNNNNNIEYKLSECVF 220

Query: 250 IRFGNVPIKNIENAIISL-NLSKTGKLKEAAFNLFNYMKIADD-SGASSIAFSSIPNH-- 305
           + FG     ++++  ++  +LS   ++ EAA  LF+ ++ ++    A  I    + +   
Sbjct: 221 VDFGKNLNDSLQSKFLAYRDLSSNNQVLEAANCLFSTLRWSESVQDAKIILLPDLRSDKT 280

Query: 306 ---GLGIAINNRLERAAAPRNQ 324
                  A+ +R+ RAA+ +  
Sbjct: 281 KSLEHSDAVFDRIYRAASGKTA 302


>gi|149920237|ref|ZP_01908709.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1]
 gi|149819003|gb|EDM78442.1| Sua5/YciO/YrdC/YwlC [Plesiocystis pacifica SIR-1]
          Length = 217

 Score = 94.4 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 10/215 (4%)

Query: 1   MQIMSI---TDSNALRK-ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPA 56
           M+ + +   TD++AL +     L+ G  + +P    Y +  D  N +A+  L   K+R  
Sbjct: 1   METIKLDDTTDTSALAQRLAATLEEGGLVCLPCNGSYRIVADLTNTSAVLDLMVSKQRTR 60

Query: 57  MNPLICHVSDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLK 113
             P +  +   + +++  A++   +  LA   WP PLT+ + L       +         
Sbjct: 61  KAPALVFIDSHARLEEIDAALPEPARVLADALWPKPLTIRVQLGDALPRKVKKELGGKKA 120

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
               RVP     +      G PL + SANR  +   ++   +   S    + + +D G  
Sbjct: 121 KVGVRVPADALARATAAALGRPLLVSSANRQKKAGESSPAQV-RRSFGARVDIFVDAGDI 179

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
           +    ST++++  +  + I R G +E   L+  ++
Sbjct: 180 QKKSASTVIDI-VDGALSIERQGTVEHAELESLLA 213


>gi|116075870|ref|ZP_01473129.1| hypothetical protein RS9916_40431 [Synechococcus sp. RS9916]
 gi|116067185|gb|EAU72940.1| hypothetical protein RS9916_40431 [Synechococcus sp. RS9916]
          Length = 217

 Score = 93.6 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 76/190 (40%), Gaps = 15/190 (7%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA- 74
              L AG    +PT+T+  L     +    R+++ +K+RP+  PLI   ++   +     
Sbjct: 22  ARCLLAGGAGLMPTDTLPALIALPGHA---RQIWTLKQRPSEKPLILMAANAEALLALVR 78

Query: 75  -SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA---NLKTACFRVP-CGFTKKLIE 129
                 +  LA+L WPG LT+VL +           A      T   RVP C   ++L+ 
Sbjct: 79  PEAQAAARPLAQLHWPGALTMVLPIAGDALAQSWLRALNPGATTLGLRVPACAQARQLLA 138

Query: 130 TYGHPLAIPSANRSGQ--ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             G PLA  SAN SG          H     +     L      +  GL ST++  Q   
Sbjct: 139 RTG-PLATTSANPSGDAAALTAAQAHCYFPDL---PLLGPTPWPAPQGLASTVLAWQDSG 194

Query: 188 KVRILRPGGL 197
             + LR G +
Sbjct: 195 SWQTLRAGAV 204


>gi|110003951|emb|CAK98291.1| conserved hypothetical protein [Spiroplasma citri]
          Length = 179

 Score = 93.6 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 11/180 (6%)

Query: 1   MQIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           M++ ++ D   +     +L     I +PT+T+YG+     +P A  R++++K R     L
Sbjct: 1   MKVYTVKDRKEI--IASYLAE-KVIIVPTDTIYGMTCIISSPVAKARIFKVKGRSEKMYL 57

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              VS + M K         L L K      +T++ ++    +     T +  T   R+ 
Sbjct: 58  SVIVSSVRMAKNFIDFPREDLKLFKKN--ETITIIGNIKDDINKLYNITED-NTIGIRIT 114

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                K I     P+   S N SGQ    N     +      + +I+D G       S I
Sbjct: 115 KSKWLKKIINKVGPIYGTSVNISGQ----NYAKEFNDLQKFNVDIIVDSGYLD-NRPSKI 169


>gi|284929281|ref|YP_003421803.1| putative translation factor [cyanobacterium UCYN-A]
 gi|284809725|gb|ADB95422.1| putative translation factor (SUA5) [cyanobacterium UCYN-A]
          Length = 134

 Score = 93.2 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 8/123 (6%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            K  + L  G  ++ PT+T+  LA   +N ++   ++ +KKR    PLI   S    V K
Sbjct: 7   DKLVQGLFEGKVVSFPTDTIPALATLPQNASS---IFALKKRSFQKPLILMCSSSENVWK 63

Query: 73  HASVDPLSLH----LAKLFWPGPLTLVLDLLST-TDIHPLSTANLKTACFRVPCGFTKKL 127
           +   +   L     +A  +WPGPLTLVL    +  +I+  +  + KT   R+P  F  + 
Sbjct: 64  YTQGNSEELRNWKNIAYRYWPGPLTLVLPASESIININTNNLIDSKTIGIRIPDCFVAQR 123

Query: 128 IET 130
           I  
Sbjct: 124 ILQ 126


>gi|296104313|ref|YP_003614459.1| hypothetical protein ECL_03976 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058772|gb|ADF63510.1| hypothetical protein ECL_03976 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 197

 Score = 92.8 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA   L     I IPT+T + LA D  +P A+ +L  +K+ P    +     +++ + 
Sbjct: 4   IDKAITVLRNSGIILIPTDTHFALAADPYSPDAVEKLTLLKRSPCTREMTFCFCELADIW 63

Query: 72  KHASVDPLSLHLAKLF----WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           +   V P      ++     WPG L + L      D  P +   L   C +      + +
Sbjct: 64  EWVDVSPWQRSKIEMLSRACWPGTLKISLRKKQRADFLPGAGDILPVVCVK--NSQMRTI 121

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCE 186
           I   G PL +  A             +    +   + L++           +T +++  +
Sbjct: 122 ISRLGRPLVVIPAGYPQDEGDLVSFTLAREDMGDCVDLVVPSNCKNPSRTATTHISLL-D 180

Query: 187 KKVRILRPGGLEIETL 202
            KV ILR G L+I +L
Sbjct: 181 DKVSILRHGELDISSL 196


>gi|332749609|gb|EGJ80026.1| ribosome maturation factor [Shigella flexneri K-671]
          Length = 106

 Score = 92.8 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 41/80 (51%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
          +A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++   
Sbjct: 8  DAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQ 67

Query: 70 VKKHASVDPLSLHLAKLFWP 89
          +K +     L+    +  +P
Sbjct: 68 LKPYIDDTMLTDVQRETIFP 87


>gi|118602506|ref|YP_903721.1| translation factor SUA5 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567445|gb|ABL02250.1| translation factor SUA5 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 178

 Score = 92.8 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 7/179 (3%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           R A  FL  G  I+ PT+T+ G+    +  +++ R+ ++K+R +   LI   SD+     
Sbjct: 6   RLAASFLKTGGVISNPTDTIQGMTCLPKFESSMARILQLKRRSSAKGLILLASDMHYFID 65

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETY 131
           +     L + +       P T +L   +      L T +  T   R+        L    
Sbjct: 66  YVEDIALLVDVVINV--QPTTYLL--KANEYTSELLTGSFDTIALRLTNNQLITDLCVAT 121

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              L   SAN + + S   +   L      ++  II    +     S I+++Q  +K+R
Sbjct: 122 NSALVSSSANITNKRSAITMLD-LKEFFNNKLDFII-PPKTYNTQASKIIDLQTREKIR 178


>gi|218961320|ref|YP_001741095.1| putative Protein-tyrosine-phosphatase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729977|emb|CAO80889.1| putative Protein-tyrosine-phosphatase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 394

 Score = 92.4 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 13/204 (6%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T +++G+     +   I R+  +K+R      I  + D+S++++   +      L   +W
Sbjct: 58  TGSMWGIGCRLSSSETIARIETLKQRADKQGFIALIPDMSVLEQD-KIPAPIRPLMNQYW 116

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGHPLAIPSANRSGQIS 147
           PG LTL+ +         +   N      RVP     + LI   G PL   S N SG + 
Sbjct: 117 PGNLTLIFNY-DDPQFAGIKRGNK--VALRVPSDPALRALISLLGEPLISTSVNVSGLMP 173

Query: 148 ITNVKHILS--SSICKEIPLIIDGGISKIGLESTIVNVQCEKK------VRILRPGGLEI 199
             N + I+    S      L     + +    STI+     ++      ++ LR G +  
Sbjct: 174 EENYERIVRNYDSWFDFALLPSSREMKRPSEPSTIIEYIGSEESGSNDDIKCLREGSIPF 233

Query: 200 ETLKRAISVELEYCVDETSTPQSP 223
             +K+A  + +   V   +  +SP
Sbjct: 234 YEIKQAFQLPVVMFVCSANICRSP 257


>gi|167561725|ref|ZP_02354641.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia oklahomensis
           EO147]
          Length = 144

 Score = 92.0 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 11/138 (7%)

Query: 194 PGGLEIETLKRAISVELEYC-VDETSTPQSPGMLKSHYAPRSQV------RLRAIHVNPR 246
           PG +  + +   + V        + + P++ G LK+HYAPR+ +      RL  +    R
Sbjct: 1   PGRVTPQQIADVLGVAPRLPDGGDATAPRASGTLKAHYAPRTPLALAPFERLERLLSAAR 60

Query: 247 EALIRFGNVPIKNIENAIISLN----LSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSI 302
           +A  R   V   +   A    +    ++        A  L+  ++  D +  + I    +
Sbjct: 61  DAGERIALVARASRAGAWAHTDGVHFVAAPEDPLVYARELYGLLRALDRAQVARILVEKL 120

Query: 303 PNHGLGIAINNRLERAAA 320
           P+    IA+N+RL RAAA
Sbjct: 121 PDTAEWIAVNDRLGRAAA 138


>gi|127512688|ref|YP_001093885.1| (NiFe) hydrogenase maturation protein HypF [Shewanella loihica
           PV-4]
 gi|126637983|gb|ABO23626.1| (NiFe) hydrogenase maturation protein HypF [Shewanella loihica
           PV-4]
          Length = 781

 Score = 92.0 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 24/174 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL  A E L  G  +AI      GL       D+ N  A+ +L   K+RPA  P     +
Sbjct: 205 ALDLAVELLAQGKTLAIK-----GLGGFHLVCDATNHEAVMQLRSRKQRPA-KPFAVMCA 258

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVL----------DLLSTTDIHPLSTANLKTA 115
            + M K  A        L +     P+TL+           D LS+  + P     +   
Sbjct: 259 SLPMAKTLACGSDAEWQLLQSA-ERPITLLQRALNKDESSSDALSSYVLSPAVAPGIDRL 317

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              +P     + L+     PL   SANRSG+  IT+ + I    + + +  ++D
Sbjct: 318 GLFLPYTPLHQLLLSRLNRPLVATSANRSGEPIITHAEQIF-ERLGEVVDAVLD 370


>gi|254425585|ref|ZP_05039302.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. PCC
           7335]
 gi|196188008|gb|EDX82973.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp. PCC
           7335]
          Length = 751

 Score = 92.0 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           L+KA   L  G  +AI      GL       D+RN  AI RL ++K+RP   PL    + 
Sbjct: 190 LQKAIASLKQGKIVAIK-----GLGGFQLLVDARNNEAITRLRQLKQRP-HKPLALICAT 243

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
            +  ++HA +  ++  L     PGP+ L+      +++  L           +P      
Sbjct: 244 FAAARRHAQISEVAAALLTAA-PGPIVLLPRRQDVSELSRLIAPQSPFLGIMLPTTPLHY 302

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILS 156
            L+  YGHP+   S N SG+   T+ +  L 
Sbjct: 303 LLLGAYGHPVVATSGNVSGEPICTDNRAALE 333


>gi|330953601|gb|EGH53861.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae Cit 7]
          Length = 142

 Score = 91.7 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPC 121
              D+S +   A VD  +    K   PGP T +L+  +T ++  L      +T   RVP 
Sbjct: 1   MCCDLSQLGLFAKVDTGAFRALKAHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPS 58

Query: 122 G-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               + L+E  G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST+
Sbjct: 59  HPIAQALLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTV 117

Query: 181 VNVQCEKKVRILRPGG 196
           +N+  E + +++R G 
Sbjct: 118 INL-AEGEPQVVRVGC 132


>gi|6513939|gb|AAF14843.1|AC011664_25 hypothetical protein [Arabidopsis thaliana]
          Length = 297

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 33/211 (15%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           DS  L+   + L  G    IPT+TVY +A D +N +A+ RL              H++  
Sbjct: 79  DSWKLQPVIDLLKQGAVGVIPTDTVYAIACDCKNHSAVERLRS------------HLASY 126

Query: 68  S------MVKKHASVDPLSLHLAKLFWPGP----LTLVLDLLSTTDIH-------PLSTA 110
           +       + + A +  + + +   F         T +L                 +  A
Sbjct: 127 AVPYEILTLLQWAFLVVMVMVMLTFFELSSNAYLYTFILTASKELPKQCVGYGTTSVKYA 186

Query: 111 NLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIID 168
           + K    R+      + +++    PL   S     +         +      E +  ++D
Sbjct: 187 SRKNVGVRISDDALCQAILQQMDAPLICTSVKGPKENEWMIDPTAIGDIYGPEGLDFVVD 246

Query: 169 GGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
           GGI ++   STIV++      +++R G   I
Sbjct: 247 GGI-RVAEPSTIVDMTGPYP-KVIREGKGPI 275


>gi|15829084|ref|NP_326444.1| hypothetical protein MYPU_6130 [Mycoplasma pulmonis UAB CTIP]
 gi|14090028|emb|CAC13786.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 154

 Score = 91.3 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP 78
           ++    +   T+T+ GL     +   + ++YEIKKRP    +I  V  ++  +  +  + 
Sbjct: 3   INDDDLLVFTTDTLIGLGGKVSDVI-LEKIYEIKKRPIDKKMIILVGSLAQAQSFSQWNL 61

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIP 138
            +   A+ +WPG  TL+++                   FR+P             PL   
Sbjct: 62  KANKQAQKYWPGATTLIVNDQ----------------GFRMPKNKALCKFLIEQGPLYTT 105

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           SAN SG  +I  +       I  +I   ID G    G+ S
Sbjct: 106 SANLSGFENIKTLDEA--KKIFPQIKHFIDFGKG-SGIPS 142


>gi|218461290|ref|ZP_03501381.1| translation factor sua5 protein [Rhizobium etli Kim 5]
          Length = 91

 Score = 90.9 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/77 (62%), Positives = 55/77 (71%)

Query: 246 REALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNH 305
            EALI FG   +    +A I L+LS  G L EAA NLF+YMK AD SG SSIAFS IP+ 
Sbjct: 1   GEALIAFGGAAVAGARDARIVLDLSPRGDLAEAAANLFDYMKRADASGVSSIAFSPIPDD 60

Query: 306 GLGIAINNRLERAAAPR 322
           GLG AIN+RL+RAAAPR
Sbjct: 61  GLGEAINDRLQRAAAPR 77


>gi|303327758|ref|ZP_07358198.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862119|gb|EFL85053.1| Sua5/YciO/YrdC/YwlC family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 82

 Score = 90.9 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%)

Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           L  A   L  G  +  PTET YGL   + +  A+ R+Y++K+RP   PL    +D +  
Sbjct: 10 DLEAAARCLRRGGVVIFPTETFYGLGCLAADAAAVGRIYQLKRRPVQRPLPLLAADAAQA 69

Query: 71 KKHASVDPLSLHL 83
               ++     L
Sbjct: 70 GSVVRLEAAPPEL 82


>gi|172035978|ref|YP_001802479.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142]
 gi|171697432|gb|ACB50413.1| putative YrdC-like RNA-binding protein [Cyanothece sp. ATCC 51142]
          Length = 215

 Score = 90.5 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 7/191 (3%)

Query: 16  CEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            ++L+ G  + +PT+TVY L V+   P AI +L +IKK     PL       +  ++ A 
Sbjct: 21  IDYLEQGEVVLLPTDTVYTLVVNGLKPKAIAKLRKIKKFGQDQPLGILTRG-NKAEEVAI 79

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPL 135
           ++  +  +   F P P+T+++   +   ++   T          P  F   L+E    PL
Sbjct: 80  LNTSAKRMISHF-PYPITMIVQ--AHPQLNREITQGFSKIFLSCPDPFIYDLVEQIPFPL 136

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
              +A   G+  ++             IPLI+DGG S+ G   T+++   E    I+  G
Sbjct: 137 VSATAKVGGEPIVSFDAA--QRYFRDIIPLIVDGGRSRYGRRGTLIDFTVEYP-TIMNFG 193

Query: 196 GLEIETLKRAI 206
            + ++ L+  +
Sbjct: 194 PISVDDLRPLL 204


>gi|330955918|gb|EGH56178.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7]
          Length = 77

 Score = 90.1 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 34/76 (44%)

Query: 6  ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
          +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1  MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66 DISMVKKHASVDPLSL 81
          +I          P   
Sbjct: 61 NIRQFDFLFEDFPELW 76


>gi|193216888|ref|YP_002000130.1| hypothetical protein MARTH_orf655 [Mycoplasma arthritidis 158L3-1]
 gi|193002211|gb|ACF07426.1| conserved hypothetical protein [Mycoplasma arthritidis 158L3-1]
          Length = 157

 Score = 89.7 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 30/167 (17%)

Query: 29  TETVYGLAVDSRNPTAIRR-----LYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHL 83
           T+T+ GL         + R     +YEIK R     LI  VS I   +        +  L
Sbjct: 13  TDTIIGLGGK------VSRRISDLIYEIKGRDPRKKLIILVSSIKQARAFKEWTSEAEAL 66

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRS 143
           A  FWPG  TLV++                   FR+P             P+ + S N S
Sbjct: 67  ANKFWPGATTLVVNDQ----------------GFRMPNQPKLLEFLEANGPVYMTSCNIS 110

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
                  ++     ++  EI  +   G +  G  S I+ V+  K +R
Sbjct: 111 NSPVCQTIEEA--KNVFPEISNVYYFGKT-SGTPSQIIRVEDHKILR 154


>gi|325142314|gb|EGC64727.1| protein yrdC [Neisseria meningitidis 961-5945]
          Length = 142

 Score = 89.7 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 5/142 (3%)

Query: 51  IKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLST 109
           +KKRP    +I   +    ++    +   +L    +  WP P T +L    +  +  L  
Sbjct: 4   LKKRPQHKGMIVIGNQFEQLQPLLQMPSENLQDMLRKEWPAPKTFLLS-AKSCVLPELRG 62

Query: 110 ANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                   RVP     ++L +    PL   S NR+G+ +    + +           I+ 
Sbjct: 63  KQRSKLAVRVPAHVGARRLCQALQTPLVSTSCNRAGKRACRTEREVRRQF--GRDVWIVG 120

Query: 169 GGISKIGLESTIVNVQCEKKVR 190
           G I +    S I++ +  K++R
Sbjct: 121 GRIGRQKSPSQIIDGETGKRLR 142


>gi|330956061|gb|EGH56321.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7]
          Length = 82

 Score = 89.7 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 34/76 (44%)

Query: 6  ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
          +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    LI    
Sbjct: 1  MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGLILIAD 60

Query: 66 DISMVKKHASVDPLSL 81
          +I          P   
Sbjct: 61 NIRQFDFLFEDFPELW 76


>gi|315267264|gb|ADT94117.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS678]
          Length = 838

 Score = 89.7 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           TD   L+ A + L  G  +AI      GL       D+RN  A+ +L   K+R A  PL 
Sbjct: 263 TDLAVLKAAADRLHQGQILAIK-----GLGGFHLICDARNDKAVNKLRLRKQRQA-KPLA 316

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             ++DI M + + +       +       P+ +++   +  D+      NL      +P 
Sbjct: 317 VMMADIQMAQHYVTGTDAEWQVL-SSQERPI-VLMSSRAEHDLSLAVAPNLNKLGVFLPY 374

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L+  +  PL   SAN SG+  ITN   ++   +   +  I+D           I
Sbjct: 375 TPLHHLLLGLFKGPLVATSANVSGEPIITNCDELIRH-LSHVVDAIVDHNRP-------I 426

Query: 181 VNVQCEKKVRILRP 194
           +N   +  V++++P
Sbjct: 427 INGCDDSVVQVIQP 440


>gi|160875032|ref|YP_001554348.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS195]
 gi|160860554|gb|ABX49088.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS195]
          Length = 840

 Score = 89.7 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           TD   L+ A + L  G  +AI      GL       D+RN  A+ +L   K+R A  PL 
Sbjct: 265 TDLAVLKAAADRLHQGQILAIK-----GLGGFHLICDARNDKAVNKLRLRKQRQA-KPLA 318

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             ++DI M + + +       +       P+ +++   +  D+      NL      +P 
Sbjct: 319 VMMADIQMAQHYVTGTDAEWQVL-SSQERPI-VLMSSRAEHDLSLAVAPNLNKLGVFLPY 376

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L+  +  PL   SAN SG+  ITN   ++   +   +  I+D           I
Sbjct: 377 TPLHHLLLGLFKGPLVATSANVSGEPIITNCDELIRH-LSHVVDAIVDHNRP-------I 428

Query: 181 VNVQCEKKVRILRP 194
           +N   +  V++++P
Sbjct: 429 INGCDDSVVQVIQP 442


>gi|269115162|ref|YP_003302925.1| hypothetical protein MHO_3870 [Mycoplasma hominis]
 gi|118406895|gb|ABK81654.1| conserved hypothetical protein [Mycoplasma hominis ATCC 23114]
 gi|268322787|emb|CAX37522.1| Conserved hypothetical protein [Mycoplasma hominis ATCC 23114]
          Length = 155

 Score = 89.0 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+     +      +YEIK R     LI  VS I   ++    +  +   AK +W
Sbjct: 13  TDTVLGIGG-PVSKEVEDLIYEIKGRDRNKKLIILVSSIKQARQFKEWNSQADEFAKKYW 71

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PG  T+V++                   FR+P             P+ + S N S     
Sbjct: 72  PGATTIVVNNQ----------------GFRMPNQKKLLEYIEVNGPIYMTSCNLSNAPVC 115

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
             +++     +  E+  + + G       S I+ V+  + +R
Sbjct: 116 KTIENA--KQLFPEVTNVYNFGP-MTQKPSQIIRVEDGEILR 154


>gi|330953600|gb|EGH53860.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae Cit 7]
          Length = 91

 Score = 89.0 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 9  SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             +++A E + AG  +  PT++ Y L     + +AI R+  +++    +       D+S
Sbjct: 27 PRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDKSAIERIRRLRQLDDKHNFTLMCCDLS 86

Query: 69 MVKKH 73
           +   
Sbjct: 87 QLGLF 91


>gi|298370470|ref|ZP_06981786.1| ribosome maturation factor rimN [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281930|gb|EFI23419.1| ribosome maturation factor rimN [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 142

 Score = 89.0 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 5/142 (3%)

Query: 51  IKKRPAMNPLICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109
           +KKRP    +I   S +  ++         ++ + +  WP P T +L   +   +  L  
Sbjct: 4   LKKRPQDKGMIVIGSRLEQLQSLLERPSEKTIFMLEREWPAPKTFLLPSRAGI-LPLLRG 62

Query: 110 ANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                   RVP     ++L +  G PL   S NR+G+      + +           ++ 
Sbjct: 63  KGRNKLAVRVPAHQGARRLCKVLGTPLVSTSCNRAGKRPCKTEREVRRQF--GRKVWVVS 120

Query: 169 GGISKIGLESTIVNVQCEKKVR 190
           G I      S I++ +   ++R
Sbjct: 121 GLIGGQEKPSQIIDGETGIRLR 142


>gi|15639175|ref|NP_218621.1| hypothetical protein TP0182 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025415|ref|YP_001933187.1| hypothetical protein TPASS_0182 [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322447|gb|AAC65168.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017990|gb|ACD70608.1| hypothetical protein TPASS_0182 [Treponema pallidum subsp. pallidum
           SS14]
          Length = 259

 Score = 89.0 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 28/186 (15%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---------AMNPLICHVSDISMVKKHA 74
            +A+PT+TVYG +     P A+  L  +K R             P I  ++D   V  + 
Sbjct: 70  LVALPTDTVYGFSG--LVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYT 127

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGH 133
               L     +  WPGP T VL +               T  FR P     + +I   G 
Sbjct: 128 G-TRLPAEF-RALWPGPYTFVLRMQDGA-----------TQAFRCPADLWLRSVIRAVGG 174

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +   SANR G+         +     K + L +D G    G  S ++++      R+LR
Sbjct: 175 AIFSTSANRHGEP-PLQDAQDIDHIFGKHLALTVDAGP-LTGSPSAVIDLT-HPVPRVLR 231

Query: 194 PGGLEI 199
            G   +
Sbjct: 232 AGAAPL 237


>gi|289808082|ref|ZP_06538711.1| putative ribosome maturation factor [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 77

 Score = 88.6 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%)

Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
              + L+    IA PTE V+G+  D  + TA+ RL  +K+RP    LI   +    +K 
Sbjct: 11 AAVVDLLNKENVIAYPTEAVFGVGCDPDSETAVTRLLALKQRPVDKGLILIAASFEQLKP 70

Query: 73 HASVD 77
          +    
Sbjct: 71 YIDDS 75


>gi|153000435|ref|YP_001366116.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS185]
 gi|151365053|gb|ABS08053.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS185]
          Length = 838

 Score = 88.2 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           TD   L+ A   L  G  +AI      GL       D+RN  A+  L   K+R A  PL 
Sbjct: 263 TDLAVLKAAANRLHQGQILAIK-----GLGGFHLICDARNDKAVNTLRLRKQRQA-KPLA 316

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             ++DI M + + +       L       P+ +++   +  D+ P    NL      +P 
Sbjct: 317 VMMADIQMAQHYVTGTDAEW-LVLSSQERPI-VLMSSRAEHDLSPAVAPNLNKLGVFLPY 374

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L++ +  PL   SAN SG+  ITN   ++   +   +  I+D           I
Sbjct: 375 TPLHHLLLDLFKGPLVATSANVSGEPIITNCDELIHH-LSHVVDAIVDHNRP-------I 426

Query: 181 VNVQCEKKVRILRP 194
           +N   +  V++++P
Sbjct: 427 INGCDDSVVQVIQP 440


>gi|218659203|ref|ZP_03515133.1| Sua5/YciO/YrdC family protein [Rhizobium etli IE4771]
          Length = 127

 Score = 87.8 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 17/141 (12%)

Query: 135 LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRP 194
           +A PSANRSG+++ T    ++   +   I  I++  I   GLESTI+++     +  LR 
Sbjct: 1   MAAPSANRSGKVTSTRFVEVVR-QLDGRISGIVEEDICDHGLESTILSLVGSPII--LRH 57

Query: 195 GGLEIETLKRAISVELEYCVDETSTPQ---SPGMLKSHYAPRSQVRLRAIHVNPREALIR 251
           G +  E L+  +       +DE + PQ   +PG LKSHYAP + V++           + 
Sbjct: 58  GSVPREALEALLG-----PIDEDTGPQKVSAPGQLKSHYAPEAAVQMNVDRPAANMVWVG 112

Query: 252 FGNVPIKNIENAIISLNLSKT 272
           FG       E     L LS +
Sbjct: 113 FGP------ECEGCQLTLSSS 127


>gi|291059589|gb|ADD72324.1| putative YrdC domain protein [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 212

 Score = 87.4 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 69/186 (37%), Gaps = 28/186 (15%)

Query: 24  PIAIPTETVYGLAVDSRNPTAIRRLYEIKKRP---------AMNPLICHVSDISMVKKHA 74
            +A+PT+TVYG +     P A+  L  +K R             P I  ++D   V  + 
Sbjct: 23  LVALPTDTVYGFSG--LVPHAVPDLICLKARGCTETEGNRREGYPFIALLADPQDVVVYT 80

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT-KKLIETYGH 133
               L     +  WPGP T VL +               T  FR P     + +I   G 
Sbjct: 81  G-TRLPAEF-RALWPGPYTFVLRMQDGA-----------TQAFRCPADLWLRSVIRAVGG 127

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILR 193
            +   SANR G+         +     K + L +D G    G  S ++++      R+LR
Sbjct: 128 AIFSTSANRHGEP-PLQDAQDIDHIFGKHLALTVDAGP-LTGSPSAVIDLT-HPVPRVLR 184

Query: 194 PGGLEI 199
            G   +
Sbjct: 185 AGAAPL 190


>gi|114563279|ref|YP_750792.1| (NiFe) hydrogenase maturation protein HypF [Shewanella
           frigidimarina NCIMB 400]
 gi|114334572|gb|ABI71954.1| (NiFe) hydrogenase maturation protein HypF [Shewanella
           frigidimarina NCIMB 400]
          Length = 803

 Score = 87.0 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 32/180 (17%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL +A E ++ G  +AI      GL       D+ N  A+  L + K+R A  PL   V+
Sbjct: 212 ALEQAVEMINRGGIVAIK-----GLGGFHLVCDATNNDAVAALRQRKQRLA-KPLAIMVT 265

Query: 66  DISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTD----------------IHPLS 108
           +++  K   S       +     P  P+TL+   +++ D                + PL 
Sbjct: 266 NLAQAKLCVSGTETEWQVLTS--PEKPITLMTKRVASVDGKDNGRDNCGNIHPIALSPLL 323

Query: 109 TANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              +      +P       L++    P+   SANRSG+  I N    +   +   +  I+
Sbjct: 324 APGIDRLGVFLPYTPLHHLLMQRLHKPIVATSANRSGEPIIANQAE-IEQHLSHVVDGIL 382


>gi|295400387|ref|ZP_06810366.1| SUA5/yciO/yrdC domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294977662|gb|EFG53261.1| SUA5/yciO/yrdC domain protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 497

 Score = 86.3 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 15/157 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D +A+ KA + L +G  +AI      GL       D+ N  A+++L   K+RP   PL  
Sbjct: 198 DGDAIDKAKQLLLSGAIVAIK-----GLGGYHLACDATNEQAVQQLRTRKQRP-TRPLAV 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
             + +S+VK+   V+     +     P    +VL   +T  + P     LKT    +P  
Sbjct: 252 MAASLSVVKQMCEVNDEEKRVLTS--PEAPIVVLKRKTTYPLAPSLAPGLKTVGVMLPYT 309

Query: 122 GFTKKLIETYGHPL-AIPSANRSGQISITNVKHILSS 157
                L++    P+  + SANRSG   +   +  L  
Sbjct: 310 PLHHLLLDEEHIPVLVMTSANRSGVPILYKDEQALQD 346


>gi|148244604|ref|YP_001219298.1| hypothetical protein COSY_0455 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326431|dbj|BAF61574.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 178

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 7/177 (3%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           A   L  G  I+ PT+T+ GL    +  +++ R+ + K R +   LI   SD+   K + 
Sbjct: 8   AASCLKVGGVISNPTDTIQGLTCLPKFESSMTRILQFKHRSSTKGLILLASDVYYFKDYV 67

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
               L +++       P T +L   +      L T +  T   R+        L      
Sbjct: 68  KDISLLINVTINT--QPTTYLL--KANRRTSQLLTGDFDTIALRLTNNQLITNLCTATHS 123

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            L   SAN + + +  ++   L      ++  II    +     S I+N+Q  +K+R
Sbjct: 124 ALVSSSANITSKCNARSMLD-LKLFFSDKLDFII-PPKTYNTQASKIINLQTGEKIR 178


>gi|167585583|ref|ZP_02377971.1| Sua5/YciO/YrdC/YwlC [Burkholderia ubonensis Bu]
          Length = 116

 Score = 85.9 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 10/110 (9%)

Query: 221 QSPGMLKSHYAPRSQV----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLS 270
           ++ G LK+HYAPR+ +           L A H       +            A     ++
Sbjct: 1   RASGTLKAHYAPRTPLALLPFDQLEPLLAAAHAAGERVALVARASRAGRWAQAADVHFIA 60

Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                +  A  L+  ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 61  APEDPQAYAHALYGMLRALDRADVARILVEKLPDTVEWIAVNDRLGRAAA 110


>gi|301167968|emb|CBW27554.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 199

 Score = 85.9 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 64/179 (35%), Gaps = 8/179 (4%)

Query: 23  LPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD-PLSL 81
                PT+TV+G+  +  +     ++ +IK      PL     +  M++    +   ++ 
Sbjct: 8   KLFVYPTDTVWGIGGNIFSNECYEKISKIKGHALKKPLSIVFKNYEMIEDLIDLPKNITK 67

Query: 82  HLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPLAIPS 139
              + ++    T+ L  + +  D+        +    R +       + E    P+   S
Sbjct: 68  QWLEKYFTLESTIGLPKVWAKRDLPKWICQESEYISIRCMDTPELAAIFEKVKGPVTSTS 127

Query: 140 ANRSGQISITNVKHILSSSICKEIP---LIIDGGISKIGLESTIVNVQCEKKVRILRPG 195
            N +G+      + +      K +P    +     +  G  STIV +   K  + +R G
Sbjct: 128 LNLTGEE-PITEQEMAKEFFRKNLPGEEFVERISTNCSGRSSTIV-LFDGKNCQFVREG 184


>gi|124027632|ref|YP_001012952.1| hydrogenase maturation protein [Hyperthermus butylicus DSM 5456]
 gi|123978326|gb|ABM80607.1| hydrogenase maturation protein [Hyperthermus butylicus DSM 5456]
          Length = 771

 Score = 85.9 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 79/217 (36%), Gaps = 19/217 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            + + +A   +D G  +A     V G+        + +   + R+  IK RP   PL   
Sbjct: 204 EDPVAEAARLIDEGHIVA-----VKGVGGFHIASLATDDEVVARVRRIKSRP-TQPLALM 257

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             D S+     ++D  +  L +   P    L+L       + PL    L T    +P   
Sbjct: 258 ARDCSVAAGLVALDAHACQLLRS--PRRPILLLPKRDDAPVSPLVAPGLDTLGIMLPYTG 315

Query: 124 TKKLIETY--GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTI 180
              L+        L + S NR G      V+ IL   +  EI  I+      +  ++ ++
Sbjct: 316 LHLLLLHMVRDGFLVMTSGNRHGMPMCRTVECIL-DQLGGEIDYILTHNREIVHRVDDSV 374

Query: 181 VNVQCEKKVRILRPGGLEIETLK--RAISVELEYCVD 215
           V     K V + R  G   E ++  R++   +    D
Sbjct: 375 VRFTAGKPVLLRRARGYAPEWIRISRSVGEHVAVGAD 411


>gi|312111086|ref|YP_003989402.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp.
           Y4.1MC1]
 gi|311216187|gb|ADP74791.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp.
           Y4.1MC1]
          Length = 758

 Score = 85.9 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 15/157 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D +A+ KA + L +G  +AI      GL       D+ N  A+++L   K+RP   PL  
Sbjct: 198 DGDAIDKAKQLLLSGAIVAIK-----GLGGYHLACDATNEQAVQQLRTRKQRP-TRPLAV 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
             + +S+VK+   V+     +     P    +VL   +T  + P     LKT    +P  
Sbjct: 252 MAASLSVVKQMCEVNDEEKRVLTS--PEAPIVVLKRKTTYPLAPSLAPGLKTVGVMLPYT 309

Query: 122 GFTKKLIETYGHPL-AIPSANRSGQISITNVKHILSS 157
                L++    P+  + SANRSG   +   +  L  
Sbjct: 310 PLHHLLLDEEHIPVLVMTSANRSGVPILYKDEQALQD 346


>gi|225025257|ref|ZP_03714449.1| hypothetical protein EIKCOROL_02154 [Eikenella corrodens ATCC
           23834]
 gi|224942015|gb|EEG23224.1| hypothetical protein EIKCOROL_02154 [Eikenella corrodens ATCC
           23834]
          Length = 141

 Score = 85.9 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 5/143 (3%)

Query: 50  EIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS 108
           ++KKRP    LI   +D+  ++     +      LA+  WP  +T +     +     L 
Sbjct: 2   QLKKRPQHKGLIVIGNDLKQLEPLLQRLPENQRRLAQSTWPAAVTFLFAAADSVP-ALLR 60

Query: 109 TANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               +    RVP     ++L    G PL   S NRSG+ ++ + + +           ++
Sbjct: 61  GRGREKLAVRVPAHDGARRLCALLGTPLVSTSCNRSGRRALRHQREV--RRCFGRDVYVV 118

Query: 168 DGGISKIGLESTIVNVQCEKKVR 190
           +G        S IV+ Q    +R
Sbjct: 119 NGRCGGSKRPSRIVDAQSGVYLR 141


>gi|251789042|ref|YP_003003763.1| (NiFe) hydrogenase maturation protein HypF [Dickeya zeae Ech1591]
 gi|247537663|gb|ACT06284.1| (NiFe) hydrogenase maturation protein HypF [Dickeya zeae Ech1591]
          Length = 766

 Score = 85.5 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 13/205 (6%)

Query: 5   SITD-SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +ITD  +A+ +A   L AG  +A     V GL       D+ +  A+ RL E K RPA  
Sbjct: 201 AITDGDDAVTQAAAALCAGRIVA-----VKGLGGFHLACDATDAQAVARLRERKHRPA-K 254

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PL   + D + + + +SV   +  L  +  P    ++L L    ++       L      
Sbjct: 255 PLAVMLPDANWLARCSSVAEPASALRLMQSPAAPIVLLPLRHDGELAAGVAPGLDEVGLM 314

Query: 119 VPCGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P    + L+    G PL + S N  G+  + +    L          ++         +
Sbjct: 315 LPANPLQHLLLAAVGRPLVMTSGNAGGKPPVLDNTQALDELATTADLWLLHDRDIVQRAD 374

Query: 178 STIVNVQCEKKVRILRPGGLEIETL 202
            ++V +Q E+   + R  G   + L
Sbjct: 375 DSVVRMQDERAEMLRRARGYVPDAL 399


>gi|238788874|ref|ZP_04632664.1| Ribosomal modification protein RimN [Yersinia frederiksenii ATCC
          33641]
 gi|238722901|gb|EEQ14551.1| Ribosomal modification protein RimN [Yersinia frederiksenii ATCC
          33641]
          Length = 92

 Score = 85.5 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%)

Query: 18 FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           L     IA PTE V+GL  D  +  A+  L  +K+RP    LI   ++   +K +    
Sbjct: 16 ALQQEAVIAYPTEAVFGLGCDPDSEKAVNALLVLKQRPWQKGLILIAANYEQLKPYVDDA 75

Query: 78 PLSLHLAKLFWP 89
           LS       +P
Sbjct: 76 MLSDEQRATIFP 87


>gi|218654186|emb|CAN86632.2| C. elegans protein Y48C3A.18b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 143

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           K  S   +S  LA    PGP+TL+ + L    +       +     RVP C     + + 
Sbjct: 2   KLVSRQTISDELANCLLPGPVTLMFERLPC--LPAEFNPGVVNVACRVPDCPIVSTICKK 59

Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKK 188
            G PLA  SAN SG  ++ T++ H     +   I LI+D G I   G  STIV++  E  
Sbjct: 60  LGQPLAQTSANVSGSSLNPTSIDH--FRDLHPNIDLILDAGSIISSGEGSTIVDLTVESG 117

Query: 189 VRILRPGGLEIETLKRA 205
            RI+R G  E ET+++ 
Sbjct: 118 FRIVRSGCAEKETMQKL 134


>gi|193205175|ref|NP_001122661.1| hypothetical protein Y48C3A.18 [Caenorhabditis elegans]
          Length = 171

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           K  S   +S  LA    PGP+TL+ + L    +       +     RVP C     + + 
Sbjct: 2   KLVSRQTISDELANCLLPGPVTLMFERLPC--LPAEFNPGVVNVACRVPDCPIVSTICKK 59

Query: 131 YGHPLAIPSANRSGQ-ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKK 188
            G PLA  SAN SG  ++ T++ H     +   I LI+D G I   G  STIV++  E  
Sbjct: 60  LGQPLAQTSANVSGSSLNPTSIDH--FRDLHPNIDLILDAGSIISSGEGSTIVDLTVESG 117

Query: 189 VRILRPGGLEIETLKRA 205
            RI+R G  E ET+++ 
Sbjct: 118 FRIVRSGCAEKETMQKL 134


>gi|317051475|ref|YP_004112591.1| (NiFe) hydrogenase maturation protein HypF [Desulfurispirillum
           indicum S5]
 gi|316946559|gb|ADU66035.1| (NiFe) hydrogenase maturation protein HypF [Desulfurispirillum
           indicum S5]
          Length = 756

 Score = 85.1 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 16/171 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
            T ++A+R A   +  G  IA     V GL       D+ N  A+  L E K R    PL
Sbjct: 203 ATQTDAVRLAAREILQGNVIA-----VKGLGGFHLLCDATNHRAVESLRERKHR-YGKPL 256

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--LDLLSTTDIHPLSTANLKTACFR 118
                D   +  ++  D  +L L +     P+ L+  L       +  L    + T    
Sbjct: 257 AVMFRDREHLLSYSPCDETALQLLESHR-APIVLLERLPHSRHRPLSELVAPGVPTLGVF 315

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           +      + L+     P+   SAN S +  ITNV H L + +       +D
Sbjct: 316 LAYTPLHRLLLHLVNRPVVATSANISDEPIITNV-HDLYARLSGGFAFALD 365


>gi|303241784|ref|ZP_07328280.1| (NiFe) hydrogenase maturation protein HypF [Acetivibrio
           cellulolyticus CD2]
 gi|302590665|gb|EFL60417.1| (NiFe) hydrogenase maturation protein HypF [Acetivibrio
           cellulolyticus CD2]
          Length = 794

 Score = 84.7 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 16/197 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            IT   A R A   L  G  +A     V G+          +  ++  L E+K R    P
Sbjct: 223 DITGPEAFRSALGILRQGGVLA-----VKGIGGFHLCCSPFDTDSVEMLRELKGR-EEKP 276

Query: 60  LICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
                 D+  V+K+  V D     L     P    +VL     +DI      + +     
Sbjct: 277 FAVMFDDVEQVEKYCIVTDEEKKQLLSRERP----IVLLRRRESDISKAVFKSSRFLGCF 332

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           +P     K+I     PL + SAN SG+  IT+   ++S    +   ++ +      G++ 
Sbjct: 333 LPYTPLHKMIINSLGPLVMTSANLSGEPIITDNDRMMSLDSERLSGVLYNERRILTGIDD 392

Query: 179 TIVNVQCEKKVRILRPG 195
           +++ V     ++ +R  
Sbjct: 393 SVLKVSPGNGIQFIRRA 409


>gi|113474623|ref|YP_720684.1| (NiFe) hydrogenase maturation protein HypF [Trichodesmium
           erythraeum IMS101]
 gi|110165671|gb|ABG50211.1| (NiFe) hydrogenase maturation protein HypF [Trichodesmium
           erythraeum IMS101]
          Length = 785

 Score = 84.7 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 16/201 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  +  G+ +A     V GL       D+ N  A+++L   K+RP   PL    
Sbjct: 206 DDVDALCTLIQRGMIVA-----VKGLGGFHLACDATNEEAVQKLRYRKRRP-DKPLALMA 259

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            DI ++ ++ S+  +   L       P+ ++L    +  + P       T  F +P    
Sbjct: 260 RDIEVISEYCSISEMEHKLLSSVA-API-VLLSANGSKQVAPSVAPGQNTLGFMLPYTPL 317

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182
               +     P+ + S N S +    + +      +       +         ++ ++V 
Sbjct: 318 HHLALRRLNVPMVLTSGNFSDEPQCIDNEE-TREKLSGIADYFLIHNRPIFNRVDDSVVR 376

Query: 183 VQCEKKVRILRPGGLEIETLK 203
           V  E    + R  G     + 
Sbjct: 377 VIKEVPQVLRRARGYAPAPIN 397


>gi|255021693|ref|ZP_05293733.1| [NiFe] hydrogenase metallocenter assembly protein HypF
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968833|gb|EET26355.1| [NiFe] hydrogenase metallocenter assembly protein HypF
           [Acidithiobacillus caldus ATCC 51756]
          Length = 803

 Score = 84.7 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 21/200 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
             T  + +  A   L  G  + I      G+       D+ N +A+ RL E K RP   P
Sbjct: 208 RFTSLDDIDAAANLLRTGEIVLIK-----GIGGFHLACDAANASAVNRLRERKGRP-HKP 261

Query: 60  LICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           L     DI ++ ++A V  L    L     P    ++L       +       +    F 
Sbjct: 262 LALMARDIEVIARYAEVGELDRRALLSKEAP---IVLLKRREPLSLPDSVAPGMCRLGFM 318

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL- 176
           +P       L+  +  P+ + S N +    IT+    +  ++      I+    + +   
Sbjct: 319 LPYTPLHHLLLRRWERPIVLTSGNLTDAPQITDEVEAI-EALDGIADWILSHDRTIVNRV 377

Query: 177 -ESTIVNVQCEKKVRILRPG 195
            +S  V V    ++R+LR  
Sbjct: 378 DDS--VAVVAAGELRLLRRA 395


>gi|260789488|ref|XP_002589778.1| hypothetical protein BRAFLDRAFT_90451 [Branchiostoma floridae]
 gi|229274961|gb|EEN45789.1| hypothetical protein BRAFLDRAFT_90451 [Branchiostoma floridae]
          Length = 160

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 2   QIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMN 58
           +I+ + D      L  A + L AG  IA+PT+T+YGLA  +++  A+ ++Y IK R +  
Sbjct: 87  KIIKLDDDMLEKQLSMAAKSLQAGNIIAVPTDTIYGLAGLAQSTEAVEQIYAIKGRNSSK 146

Query: 59  PLICHVSDISMVKK 72
           P+   V+++S + +
Sbjct: 147 PVAISVAEVSDIPR 160


>gi|158431283|pdb|2YV4|A Chain A, Crystal Structure Of C-Terminal Sua5 Domain From
           Pyrococcus Horikoshii Hypothetical Sua5 Protein Ph0435
          Length = 105

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 232 PRSQVR--LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIA 289
           PR +V+  +  +    +E   + G +  ++  NA     L     ++E A NLF  ++  
Sbjct: 12  PREKVKGKITELVKELKERGKKVGVIGSESY-NADEFFFLGS--SVEEVAKNLFKALRYX 68

Query: 290 DDSGASSIAFSSIPNHGLGIAINNRLERAAAPR 322
           D +G   +    +   GLG+A+ NRL +A+  +
Sbjct: 69  DKAGVDVVIAEGVEERGLGLAVXNRLRKASGYK 101


>gi|224082001|ref|XP_002195111.1| PREDICTED: yrdC domain containing (E. coli) [Taeniopygia guttata]
          Length = 162

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 15/151 (9%)

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIE 129
           +++  V+ +   L +   PGP+TLVL+   + +++            R+P   F + L  
Sbjct: 15  RRYCHVN-VPDQLLRDLLPGPVTLVLER--SEELNKDLNPFTSLVGVRIPDHPFMRDLAR 71

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLESTIVNV 183
               PLA+ SAN S Q S   V       +  ++ L++DGG        +  L ST+V++
Sbjct: 72  ACSGPLALTSANISSQGSTLTVLE--FQDLWPQLSLVVDGGPIGDIQSPECRLGSTVVDL 129

Query: 184 QCEKKVRILRPGGL---EIETLKRAISVELE 211
               K  I+RPG      +E LK+   +  E
Sbjct: 130 SVSGKFSIIRPGCALTPTVEILKKKYGLVPE 160


>gi|313683170|ref|YP_004060908.1| (nife) hydrogenase maturation protein hypf [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156030|gb|ADR34708.1| (NiFe) hydrogenase maturation protein HypF [Sulfuricurvum kujiense
           DSM 16994]
          Length = 758

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 22/188 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A E L +G  IA+      GL       D+ +  A+  L   K R A  PL    
Sbjct: 203 DPIDLAVEMLRSGKIIALK-----GLGGFHLMCDATSDAAVSELRLRKHRKA-KPLAVMF 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
             +   +++  ++     +       P+ +++D L  TD+       ++     +P    
Sbjct: 257 RSLEQCERYTRINQSEREMIGGAI-KPI-VIVDALQGTDLSKYIAPGIERLGVFIPYTPL 314

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
            + + E    PL   SAN S +  I     I++  +   +  I+D          TIVN 
Sbjct: 315 HRLVFEKIDFPLVATSANISDEPIIVRSSEIIN-RLGNVVDGILDHDR-------TIVNA 366

Query: 184 QCEKKVRI 191
             +  V+ 
Sbjct: 367 LDDAVVQF 374


>gi|145637788|ref|ZP_01793438.1| hypothetical protein CGSHiHH_02760 [Haemophilus influenzae
          PittHH]
 gi|145269033|gb|EDK08986.1| hypothetical protein CGSHiHH_02760 [Haemophilus influenzae
          PittHH]
          Length = 67

 Score = 84.3 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 13 RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +  + L     +A PTE V+GL  + ++ +A+++L ++K+RP    LI     +
Sbjct: 4  EQIADALRQNQVVAYPTEAVFGLGCNPQSESAVKKLLDLKQRPVEKGLILVAPSL 58


>gi|325525441|gb|EGD03262.1| putative translation factor [Burkholderia sp. TJI49]
          Length = 116

 Score = 84.3 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 10/110 (9%)

Query: 221 QSPGMLKSHYAPRSQV----------RLRAIHVNPREALIRFGNVPIKNIENAIISLNLS 270
           ++ G LK+HYAPR+ +           L     +     +            A     ++
Sbjct: 1   RASGTLKAHYAPRTPLALLPFDALESLLAVAQADGERVALVARASRAGRWAQADGVHFVA 60

Query: 271 KTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
                +  A +L+  ++  D +  + I    +P     IA+N+RL RAAA
Sbjct: 61  APEDPQAYARDLYGILRTLDRAQVARILVEKLPETVEWIAVNDRLGRAAA 110


>gi|212635441|ref|YP_002311966.1| hydrogenase maturation protein HypF [Shewanella piezotolerans WP3]
 gi|212556925|gb|ACJ29379.1| Hydrogenase maturation protein HypF [Shewanella piezotolerans WP3]
          Length = 798

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 15/172 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           ++ ++S+ L +A E + +G  +AI      GL       D+ N  +++ L + K RPA  
Sbjct: 199 ITSSESDPLVQAIEAIKSGKILAIK-----GLGGFHLVCDATNHDSVKALRQRKNRPA-K 252

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTANLKTACF 117
           PL   V +  + KK  + +             P+T++        +I  +   ++     
Sbjct: 253 PLAIMVENSQVAKKLVTGNDTEWQTLNSN-ERPITVMQKRQKPELEISSIIAPDIDRLGV 311

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
            +P     + L+E    PL + SAN SG+  IT     + S +   +  I+D
Sbjct: 312 FLPYTPLHQMLMERVARPLVMTSANLSGEPIIT-ASEDIVSKLGHIVDHILD 362


>gi|302850327|ref|XP_002956691.1| hypothetical protein VOLCADRAFT_107339 [Volvox carteri f.
           nagariensis]
 gi|300258052|gb|EFJ42293.1| hypothetical protein VOLCADRAFT_107339 [Volvox carteri f.
           nagariensis]
          Length = 233

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +D+  L +  + L  G    IPT+T+  +  D  N  A++RLY +K+  A  PL C V +
Sbjct: 61  SDAWRLEQIVDLLKNGAVGVIPTDTLPAIVCDLHNKDAVQRLYTVKEMDAKKPLSCLVPN 120

Query: 67  ISMVKKHASVDPLS--------LHLAKLFWPGPLTL 94
           +S V ++ +  P S         ++ +   PGP  L
Sbjct: 121 LSAVTQYTTGFPASNTPGSPNWFNVVRRLVPGPTIL 156


>gi|319426299|gb|ADV54373.1| (NiFe) hydrogenase maturation protein HypF [Shewanella putrefaciens
           200]
          Length = 801

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 22/197 (11%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +++T    L+ A   L  G  +AI      GL       D+R+  A+  L + K+R A  
Sbjct: 214 VNVTQQTVLQLAANRLAQGQILAIK-----GLGGFHLVCDARHTGAVTALRQRKQRQA-K 267

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PL   V++I+M +++ +       +       P+ ++++ +   D+      NL      
Sbjct: 268 PLAVMVANIAMAQRYVTGTDAEWQVL-SSQERPI-VLMNSVPANDLSIEVAPNLDKLGVF 325

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P       L+  +  PL   SAN SG+  IT+   ++S  +   +  I+D         
Sbjct: 326 LPYTPLHHLLLALFNGPLVATSANVSGEPIITHCDELVSH-LSHVVDAIVDHNRP----- 379

Query: 178 STIVNVQCEKKVRILRP 194
             I+N   +  V++++P
Sbjct: 380 --IINGCDDSVVQVIQP 394


>gi|117920320|ref|YP_869512.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. ANA-3]
 gi|117612652|gb|ABK48106.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. ANA-3]
          Length = 835

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 17/165 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            L  A E L  G  +AI      GL       D+ N  A+ +L + K+R A  PL   + 
Sbjct: 245 VLSAAAEKLAQGQILAIK-----GLGGFHLMCDATNTLAVNQLRQRKQRKA-KPLAVMMP 298

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            I + K++ +   +    L+    P    +++      ++ P    N+      +P    
Sbjct: 299 SIEVAKRYVTGTQVEWQTLSAQERP---IVLMQAQDKHNLSPEIAPNIPKLGIFLPYTPL 355

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              L+  +  PL   SAN SG+  IT+   ++S  +   +  I+D
Sbjct: 356 HHLLLGQFNGPLVATSANVSGEPIITDCDELIS-QLGHVVDAIVD 399


>gi|288818319|ref|YP_003432667.1| hydrogenase maturation protein [Hydrogenobacter thermophilus TK-6]
 gi|152061261|dbj|BAF73680.1| hydrogenase maturation protein [Hydrogenobacter thermophilus]
 gi|288787719|dbj|BAI69466.1| hydrogenase maturation protein [Hydrogenobacter thermophilus TK-6]
 gi|308751916|gb|ADO45399.1| (NiFe) hydrogenase maturation protein HypF [Hydrogenobacter
           thermophilus TK-6]
          Length = 742

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/202 (21%), Positives = 71/202 (35%), Gaps = 20/202 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57
           I+      AL+   + L  GL +A     V G+       D+ N  A+R L E K+R + 
Sbjct: 193 ILKADRDKALKLVAKALKDGLIVA-----VKGIGGFHLMCDATNEEAVRLLRERKRR-SE 246

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            P      D+  V  +A    L   L       P   ++ +    D+       LK    
Sbjct: 247 KPFAVMFRDLEQVSVYAEPTELERALLLS----PERPIVLVRKRRDLASSVAPGLKRIGA 302

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS--SSICKEIPLIIDGGISKI 174
            +P       ++ +   P+   S N S +  + +    +   SS    I L     I + 
Sbjct: 303 FLPYSPLHHIILRSVDFPVVATSGNLSDEPIVKDNAEAIQKLSSFAHMILLHNRD-IKRR 361

Query: 175 GLESTIVNVQCEKKVRILRPGG 196
             +S +V V     V I R  G
Sbjct: 362 CDDS-VVKVIGGVPVPIRRSRG 382


>gi|73749117|ref|YP_308356.1| [NiFe] hydrogenase maturation protein HypF [Dehalococcoides sp.
           CBDB1]
 gi|289433093|ref|YP_003462966.1| (NiFe) hydrogenase maturation protein HypF [Dehalococcoides sp. GT]
 gi|73660833|emb|CAI83440.1| [NiFe] hydrogenase maturation protein HypF [Dehalococcoides sp.
           CBDB1]
 gi|288946813|gb|ADC74510.1| (NiFe) hydrogenase maturation protein HypF [Dehalococcoides sp. GT]
          Length = 763

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +++++ + +A + L  G  +A     V GL       D+ NP A+  L   K+RP+  P
Sbjct: 201 ELSNTDTIAEAAKLLQDGQILA-----VRGLGGFLLAADATNPQAVATLRNRKRRPS-KP 254

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               ++++   +K+ S+     HL     P    ++      + + P +          +
Sbjct: 255 FAVMLANLEEARKYCSISKEEEHLL--VSPAAPIVLCRWNKESPVCPETAPGQNYLGIML 312

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                   L++    PL + S N S +    +    L   +C      +
Sbjct: 313 SYTPLHHLLLKEINKPLVMTSGNLSEEPIAKDNDEALK-RLCNIADYFL 360


>gi|120598734|ref|YP_963308.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. W3-18-1]
 gi|120558827|gb|ABM24754.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. W3-18-1]
          Length = 801

 Score = 84.0 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 22/197 (11%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +++T    L+ A   L  G  +AI      GL       D+R+  A+  L + K+R A  
Sbjct: 214 VNVTQQTVLQLAANRLAQGQILAIK-----GLGGFHLVCDARHTGAVTALRQRKQRQA-K 267

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PL   V++I+M +++ +       +       P+ ++++ +   D+      NL      
Sbjct: 268 PLAVMVANIAMAQRYVTGTDAEWQVL-SSQERPI-VLMNSIPANDLSIEVAPNLDKLGVF 325

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P       L+  +  PL   SAN SG+  IT+   ++S  +   +  I+D         
Sbjct: 326 LPYTPLHHLLLALFNGPLVATSANVSGEPIITHCDELVSH-LSHVVDAIVDHNRP----- 379

Query: 178 STIVNVQCEKKVRILRP 194
             I+N   +  V++++P
Sbjct: 380 --IINGCDDSVVQVIQP 394


>gi|146293189|ref|YP_001183613.1| (NiFe) hydrogenase maturation protein HypF [Shewanella putrefaciens
           CN-32]
 gi|145564879|gb|ABP75814.1| (NiFe) hydrogenase maturation protein HypF [Shewanella putrefaciens
           CN-32]
          Length = 801

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 22/197 (11%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +++T    L+ A   L  G  +AI      GL       D+R+  A+  L + K+R A  
Sbjct: 214 VNVTQQTVLQLAANRLAQGQILAIK-----GLGGFHLVCDARHTGAVTALRQRKQRQA-K 267

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           PL   V++I+M +++ +       +       P+ ++++ +   D+      NL      
Sbjct: 268 PLAVMVANIAMAQRYVTGTEAEWQVL-SSQERPI-VLMNSIPANDLSIEVAPNLDKLGVF 325

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           +P       L+  +  PL   SAN SG+  IT+   ++S  +   +  I+D         
Sbjct: 326 LPYTPLHHLLLALFNGPLVATSANVSGEPIITHCDELVSH-LSHVVDAIVDHNRP----- 379

Query: 178 STIVNVQCEKKVRILRP 194
             I+N   +  V++++P
Sbjct: 380 --IINGCDDSVVQVIQP 394


>gi|225850258|ref|YP_002730492.1| (NiFe) hydrogenase maturation protein HypF [Persephonella marina
           EX-H1]
 gi|225646099|gb|ACO04285.1| (NiFe) hydrogenase maturation protein HypF [Persephonella marina
           EX-H1]
          Length = 747

 Score = 83.6 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 14/154 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A E L  G  +A     V G+       D+ +  AI  L E K+R    P    
Sbjct: 201 EEALKIAVELLGKGKILA-----VKGIGGFHLVCDATDDKAIDLLRERKRRGE-KPFAVM 254

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
             DI  +K +A + P    +     P    +++     T +       L      +P   
Sbjct: 255 FRDIDQIKDYAEITPFEEAVI--LSPERPIVIVRSKKETGLSKGVAPYLDRIGVFLPYSP 312

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
               L+  YG PL + SAN S +  + +      
Sbjct: 313 LHHLLLNDYGKPLVMTSANLSDEPIVKDNDEAFE 346


>gi|242239941|ref|YP_002988122.1| (NiFe) hydrogenase maturation protein HypF [Dickeya dadantii
           Ech703]
 gi|242131998|gb|ACS86300.1| (NiFe) hydrogenase maturation protein HypF [Dickeya dadantii
           Ech703]
          Length = 769

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 12/193 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+ +A + L AG  +A     V GL       D+    A+ RL   K RPA  PL   
Sbjct: 205 DEAIAQAAQTLLAGGIVA-----VKGLGGFHLACDAICDDAVARLRARKHRPA-KPLAVM 258

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + D   +   +++  ++     L  P    ++L L +   +       L      +P   
Sbjct: 259 LPDDGWLAACSTLSDVNAARRLLRSPAAPIVLLPLRTDGALSAGIAPGLDEVGLMLPGNP 318

Query: 124 TKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            + L+    G PL + S N SG+    +    L+         ++         + ++V 
Sbjct: 319 LQHLLLAAVGRPLVMTSGNASGRPPALDNAQALTDLAGIADVWLLHDRDIVQRADDSVVR 378

Query: 183 VQCEKKVRILRPG 195
           +Q   +  +LR  
Sbjct: 379 MQSAGQAELLRRA 391


>gi|217973576|ref|YP_002358327.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS223]
 gi|217498711|gb|ACK46904.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS223]
          Length = 840

 Score = 83.6 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 22/194 (11%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           TD   L+ A   L  G  +AI      GL       D+RN  A+  L   K+R A  PL 
Sbjct: 265 TDLAVLKAAANRLHQGQILAIK-----GLGGFHLICDARNDKAVNTLRLRKQRQA-KPLA 318

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             ++DI M + + +       +       P+ +++      ++      NL      +P 
Sbjct: 319 VMMADIQMAQHYVTGTDAEWQVL-SSQERPI-VLMSSRPEHELSLAVAPNLNKLGVFLPY 376

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L+  +  PL   SAN SG+  IT+   ++   +   +  I+D           I
Sbjct: 377 TPLHHLLLGLFKGPLVATSANVSGEPIITDCDELIHH-LSHVVDAIVDHNRP-------I 428

Query: 181 VNVQCEKKVRILRP 194
           +N   +  V++++P
Sbjct: 429 INGCDDSVVQVIQP 442


>gi|24373654|ref|NP_717697.1| hydrogenase maturation protein HypF [Shewanella oneidensis MR-1]
 gi|24347998|gb|AAN55141.1|AE015650_11 hydrogenase maturation protein HypF [Shewanella oneidensis MR-1]
          Length = 808

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 15/164 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            L  A   L  G  +AI      GL       D+RN  A+ +L + K+R A  PL   + 
Sbjct: 221 VLSAAANMLAQGHILAIK-----GLGGFHLMCDARNSHAVSQLRQRKQRKA-KPLAVMMP 274

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
            I M K++ +             P    +++  L   D++P    N+      +P     
Sbjct: 275 SIEMAKQYVTGTEAEWQTLSS--PERPIVLMQALDEHDLNPEIAPNIPKLGVFLPYTPLH 332

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
             L+  +  PL   SAN SG+  IT+   ++S  +   +  I+D
Sbjct: 333 HLLLSQFNGPLVATSANVSGEPIITDCDALIS-QLGHVVDAIVD 375


>gi|119627723|gb|EAX07318.1| yrdC domain containing (E. coli), isoform CRA_b [Homo sapiens]
          Length = 239

 Score = 83.2 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
           +   L K   PGP+TLV++   + +++            R+P   F + L + +  PLA+
Sbjct: 96  VPEGLLKDLLPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLAL 153

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE------STIVNVQCEKKVRI 191
            SAN S Q S  NV+      +  ++ L+IDGG    G        ST+V++    K  I
Sbjct: 154 TSANLSSQASSLNVEE--FQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGI 211

Query: 192 LRPGG 196
           +RPG 
Sbjct: 212 IRPGC 216


>gi|149608588|ref|XP_001515227.1| PREDICTED: similar to YRDC protein, partial [Ornithorhynchus
          anatinus]
          Length = 65

 Score = 83.2 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           AL  A   L AG  IA+PT+T+YGLA  + +  A+R +Y IK R    PL   +  ++ 
Sbjct: 4  EALGLAVSALRAGGVIAVPTDTLYGLACSALSSAALRDVYRIKGRSGDKPLALCLGSVAD 63

Query: 70 VK 71
          V 
Sbjct: 64 VY 65


>gi|147669879|ref|YP_001214697.1| (NiFe) hydrogenase maturation protein HypF [Dehalococcoides sp.
           BAV1]
 gi|146270827|gb|ABQ17819.1| (NiFe) hydrogenase maturation protein HypF [Dehalococcoides sp.
           BAV1]
          Length = 763

 Score = 82.8 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +++++ + +A + L  G  +AI      GL       D+ NP A+  L   K RP+  P
Sbjct: 201 ELSNTDTIAEAAKLLQDGQILAIR-----GLGGFLLAADATNPQAVAALRNRKHRPS-KP 254

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               ++++   +K+ S+     +L     P    ++      + + P +          +
Sbjct: 255 FAVMLANLEEARKYCSISKEEENLL--VSPAAPIVLCRWNKESPVCPETAPGQNYLGIML 312

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                   L++    PL + S N S +    +    L   +C      +
Sbjct: 313 SYTPLHHLLLKEINKPLVMTSGNLSEEPIAKDNDEALK-RLCNIADYFL 360


>gi|294634811|ref|ZP_06713335.1| [NiFe] hydrogenase maturation protein HypF [Edwardsiella tarda ATCC
           23685]
 gi|291091779|gb|EFE24340.1| [NiFe] hydrogenase maturation protein HypF [Edwardsiella tarda ATCC
           23685]
          Length = 774

 Score = 82.8 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 16/156 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A +  C+ L++G  +AI      GL       D+ +  AI RL   K+RPA  PL   
Sbjct: 200 EEAWQAVCQVLESGGIVAIK-----GLGGFHLACDASDAAAIARLRTRKQRPA-KPLALM 253

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
           +  I  + ++    P +  +A L  P  P+ L+    ++  +       L      +P  
Sbjct: 254 LPGIDWLARYCRTTPEAGLVALLNSPAAPIVLI---PASDAVPTGVAPGLDEVGVMLPST 310

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
                L+   G PL + S N SGQ    +    LS 
Sbjct: 311 PLHHLLLARLGRPLVMTSGNASGQPPALSNDQALSD 346


>gi|227355800|ref|ZP_03840193.1| hydrogenase maturation protein [Proteus mirabilis ATCC 29906]
 gi|227164119|gb|EEI49016.1| hydrogenase maturation protein [Proteus mirabilis ATCC 29906]
          Length = 766

 Score = 82.4 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 14/203 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL +AC+ L AG  +A     V G+       D+RN  ++ RL   K RPA  PL   
Sbjct: 200 ERALTQACQALLAGKIVA-----VKGIGGFHLVCDARNSESVARLRARKHRPA-KPLAVM 253

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           ++ I  ++K          + +       P+ L+   ++   +  L    L      +P 
Sbjct: 254 LTGIEQLQKPDDNAEFYSKVIETLTSTAAPIVLIPKEIAPISLSELIAPGLTEVGVMLPA 313

Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
              + L+      PL + S N +G       +  L+         +I         + ++
Sbjct: 314 NPLQHLLAHETQIPLVMTSGNATGHTPALTNEEALNQLGDIAELFLIHNREIIQRADDSL 373

Query: 181 VNVQCEKKVRILRPGGLEIETLK 203
           V ++ ++ V I R  G   + + 
Sbjct: 374 VRIEDDQCVMIRRSRGYVPDAIA 396


>gi|90410745|ref|ZP_01218760.1| hydrogenase maturation protein HypF [Photobacterium profundum 3TCK]
 gi|90328376|gb|EAS44674.1| hydrogenase maturation protein HypF [Photobacterium profundum 3TCK]
          Length = 745

 Score = 82.4 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 15/165 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+ K  + L  G  +AI      GL       ++ N  A+ RL +IK+R    P    V+
Sbjct: 173 AIDKTAKTLQRGGIVAIK-----GLGGFHLACNASNSDAVTRLRQIKRRQR-KPFAIMVA 226

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVP-CGF 123
           D +  K+    +     +     P P+ L+       + +      ++      +P    
Sbjct: 227 DGNAAKQLVWGEAKEWDML-HSQPSPIVLMKKKAVPQSYLAANVAPSVPYLGVILPYTPL 285

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              L+E     + + SAN SG    T    +        I  ++D
Sbjct: 286 HVLLLEHLDQAIVLTSANGSGMPIATEYDEVY-DQFDGLIDGVLD 329


>gi|308189829|ref|YP_003922760.1| translation factor [Mycoplasma fermentans JER]
 gi|319777044|ref|YP_004136695.1| translation factor sua5 protein [Mycoplasma fermentans M64]
 gi|307624571|gb|ADN68876.1| translation factor [Mycoplasma fermentans JER]
 gi|318038119|gb|ADV34318.1| Translation factor SUA5 protein [Mycoplasma fermentans M64]
          Length = 151

 Score = 82.4 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+         +  LY +KKRP    ++  V+ +   +        +  LA  +W
Sbjct: 11  TDTVTGIGG-PICQETLDALYYLKKRPKSKKIMILVASLKQAQSFKEWTKEANDLALKYW 69

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PG  +++ +                   FR+P             P+ + SAN S Q   
Sbjct: 70  PGAYSIITNNQ----------------GFRMPNNKKLLEFLEKNGPMYVTSANVSTQE-P 112

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            ++K      +  E+  + + G  K G+ S I++ Q  + +R
Sbjct: 113 IDIKDA--HKVFPEVKNVYNFGKGK-GVASHIIDAQSNEWLR 151


>gi|238809827|dbj|BAH69617.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 166

 Score = 82.4 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+         +  LY +KKRP    ++  V+ +   +        +  LA  +W
Sbjct: 26  TDTVTGIGG-PICQETLDALYYLKKRPKSKKIMILVASLKQAQSFKEWTKEANDLALKYW 84

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PG  +++ +                   FR+P             P+ + SAN S Q   
Sbjct: 85  PGAYSIITNNQ----------------GFRMPNNKKLLEFLEKNGPMYVTSANVSTQE-P 127

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            ++K      +  E+  + + G  K G+ S I++ Q  + +R
Sbjct: 128 IDIKDA--HKVFPEVKNVYNFGKGK-GVASHIIDAQSNEWLR 166


>gi|16331389|ref|NP_442117.1| hypothetical protein slr0006 [Synechocystis sp. PCC 6803]
 gi|1001560|dbj|BAA10187.1| slr0006 [Synechocystis sp. PCC 6803]
          Length = 217

 Score = 82.4 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 9/177 (5%)

Query: 31  TVYGLAVDSRNPTAIRRLYEIKKRPAMNPL-ICHVSDISMVKKHASVDPLSLHLAKLFWP 89
           T Y L V+  +P A+ +L   K+     PL I    D +M    A + P +  L  LF P
Sbjct: 38  TTYVLVVNGASPRAVAQLRAFKQFDKDQPLGILTRGDRAM--DVAKIPPAAKKLMGLF-P 94

Query: 90  GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISIT 149
            P+TL+++ L   D  P  T   +      P  F   L+     PL   +A   G+    
Sbjct: 95  LPITLIVEALPKLD--PGITQGFRNIFIACPDAFVFDLVGAMPFPLVCATAKVGGE--PV 150

Query: 150 NVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
                 S     ++PLI DGG  +     T+++        I+  G +  + L+  I
Sbjct: 151 TSFEAASRYFEGQVPLIGDGGRCRYARRGTLIDCTL-PLPTIMNFGPISFDDLRPLI 206


>gi|83319443|ref|YP_424138.1| hypothetical protein MCAP_0147 [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283329|gb|ABC01261.1| conserved hypothetical protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 166

 Score = 82.4 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 20/164 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           +TD+  + KA E L     + +PT+T+YGL+        I ++ ++KK     PLI  +S
Sbjct: 2   LTDTK-INKAIELLKNNQIVILPTDTIYGLSAIYSLENQI-KINQVKKADINKPLIVLIS 59

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFT 124
            +  + K   +D             P T++    S+            +   R V     
Sbjct: 60  SLDQLDKLDILDLTDKDFLLNT--DPTTVIFKTTSS------------SIAIRLVKRNDI 105

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           K++I   G P+   S N  G   +TN K +++    K I +  D
Sbjct: 106 KQIINNTG-PIISTSVNIHGFDPLTNKKDLIN--FNKNIEVFFD 146


>gi|295097293|emb|CBK86383.1| [NiFe] hydrogenase maturation protein HypF [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 738

 Score = 82.4 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           + T  +AL  A   L+ G  +A     V GL       D+ NP A+R+L   K+RP   P
Sbjct: 193 AATRESALSAAVAMLEGGGIVA-----VKGLGGFHLVCDALNPQAVRKLRARKQRP-TRP 246

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   +        HA   P ++       P    ++                L T    +
Sbjct: 247 LAVMI-------PHADDLPEAIQTLLRS-PAAPIVLTPKACLPAFPEEIAPGLDTVGVML 298

Query: 120 PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
           P    + L+      PL + S N SG     + +  L  
Sbjct: 299 PANPLQHLLMLDCQRPLVMTSGNLSGHPPAISNQQALEE 337


>gi|315180283|gb|ADT87197.1| hydrogenase maturation protein HypF [Vibrio furnissii NCTC 11218]
          Length = 766

 Score = 82.4 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 23/173 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+ +A E L AG  IA+      GL       D+ +  A+ RL E+K R    PL   VS
Sbjct: 202 AIERAAEQLIAGGVIALK-----GLGGFHLVCDATSLQAVARLRELKHRAR-KPLAVMVS 255

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST----TDIHPLSTANLKTACFR--- 118
           D++  K +   + L     K     P+ L+     T      +      ++         
Sbjct: 256 DVAQAKHYVQGEALEWQTLKSQA-SPIVLMHKAEHTDAGRVPVADNVAPDVDCLGVMLAY 314

Query: 119 VPCGFTK-KLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
            P        ++  G   PL + SAN SG    T  + +  +     +  ++D
Sbjct: 315 TPLHLLLIDALQQRGCFAPLVMTSANVSGLPLATEAQQVF-AMFGSSLDCVLD 366


>gi|307721227|ref|YP_003892367.1| (NiFe) hydrogenase maturation protein HypF [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979320|gb|ADN09355.1| (NiFe) hydrogenase maturation protein HypF [Sulfurimonas
           autotrophica DSM 16294]
          Length = 756

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           ++ D+N + +  + +  G  IA+      GL       D+ N +A+++L + K RP   P
Sbjct: 201 TVNDTNPIEQCAQLIQNGKSIALK-----GLGGFHIVCDATNESAVKQLRKNKHRP-TKP 254

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L      I  +KK A +      L  L    P+ +V++   TT +      N+      +
Sbjct: 255 LAVMFLSIKEIKKVAKLSKKDEELI-LSRERPI-VVVEKKDTTFLADSIAPNIDRIGVFL 312

Query: 120 PCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILS 156
           P     +L+ T    P+   SAN S +  +T+ K I+ 
Sbjct: 313 PYTPLHELLLTILKTPIVATSANVSDEPIVTDEKEIVK 350


>gi|304411350|ref|ZP_07392964.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS183]
 gi|307305328|ref|ZP_07585076.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           BA175]
 gi|304350205|gb|EFM14609.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS183]
 gi|306911631|gb|EFN42056.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           BA175]
          Length = 803

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 22/194 (11%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           TD   L  A + L  G  +AI      GL       D+R+  A+  L   K+R A  PL 
Sbjct: 229 TDLAILTAAADRLHQGQILAIK-----GLGGFHLICDARSDKAVNTLRLRKQRQA-KPLA 282

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             ++DI+M + + +       +       P+ +++   +  D+ P    NL      +P 
Sbjct: 283 VMMTDITMAQHYVTGTDAEWRVL-SSQERPI-VLMSSRAEHDLSPAVAPNLNKLGVFLPY 340

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L+  +  PL   SAN SG+  IT+   ++   +   +  I+D           I
Sbjct: 341 TPLHHLLLGLFKGPLVATSANVSGEPIITDCDELIHH-LSHVVDAIVDHNRP-------I 392

Query: 181 VNVQCEKKVRILRP 194
           +N   +  V++++P
Sbjct: 393 INGCDDSVVQVIQP 406


>gi|187735892|ref|YP_001878004.1| (NiFe) hydrogenase maturation protein HypF [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425944|gb|ACD05223.1| (NiFe) hydrogenase maturation protein HypF [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 775

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 104/323 (32%), Gaps = 69/323 (21%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLA-------VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            +    L  GL +A+       L         D+ +  A+RRL  +K+R A  P    V 
Sbjct: 216 AQVAWVLADGLIVAL-------LGVGGFQLLADASSEAAVRRLRRLKERDA-KPFAVMVP 267

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D++  ++   +      L     P    ++       D+ P      +     +P     
Sbjct: 268 DVAAAERLCRLSEEERRLLTS--PAAPIVLARGGKDVDLAPSVCMFSRFVGIMLPSSPLH 325

Query: 126 KLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNV 183
            L+ + +G PL + S N SG+    +V+  L   +     + +      +  ++ ++V V
Sbjct: 326 ALLMDVWGKPLVVTSGNLSGEPLCVSVEEGL-EKLGHVADVFLVHDRPVVRPVDDSVVRV 384

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
              + + + R  G                                 YAPR  V   +   
Sbjct: 385 TDGRAMMVRRARG---------------------------------YAPR-PVWRTSAAA 410

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAF-NLF----NYM-KIADDSGASSI 297
               AL       I  ++  +  ++    G L  AA  N F      + +  D      I
Sbjct: 411 PDMLALGAGLKNTICWLKRGVAVMSQH-LGDLSSAASLNAFERTVEALGRTLDAV-PQVI 468

Query: 298 AFSSIPNHG---LGIAINNRLER 317
           A  + P+     LG     RL R
Sbjct: 469 AVDAHPDGPTFALGR----RLAR 487


>gi|315637441|ref|ZP_07892652.1| hydrogenase maturation protein HypF [Arcobacter butzleri JV22]
 gi|315478231|gb|EFU68953.1| hydrogenase maturation protein HypF [Arcobacter butzleri JV22]
          Length = 748

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 1   MQIMSITDS------NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLY 49
           M + +I +S       A+ +    +  G  IA     V G+       D+ N   + +L 
Sbjct: 187 MTLYNINNSILSYNMKAIEQTANLIKDGYIIA-----VKGMGGFHIVCDATNDKVVNKLR 241

Query: 50  EIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109
           EIK RP   P     S I+ +K++ +++     +       P+ LV   ++T     ++ 
Sbjct: 242 EIKNRP-NKPFAVMFSSINSIKQYTNINYQEEEILTSK-EKPIVLVKKRINTNLSSYIAP 299

Query: 110 ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              K  CF   CG    L +   +P+   SAN   +  I +   I+   +   +  ++D
Sbjct: 300 NISKLGCFIANCGIHHLLFKYLQNPIVATSANLKDEPIIRSKDEII-EKLGSIVDFVLD 357


>gi|238753080|ref|ZP_04614532.1| Carbamoyltransferase hypF [Yersinia rohdei ATCC 43380]
 gi|238708691|gb|EEQ00957.1| Carbamoyltransferase hypF [Yersinia rohdei ATCC 43380]
          Length = 762

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 33/223 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +AL++A + L AG  +AI      GL       D+ N  A+ RL + K RP+  PL   +
Sbjct: 209 SALQQAADALLAGQIVAIK-----GLGGFHLAVDATNAGAVARLRQRKHRPS-KPLAVML 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            DI+ +        ++  L  L  P    +++     + +      +L      +P    
Sbjct: 263 PDINWLAACVQSSEMTALLRLLRSPAAPIVLVTKQPQSPVCAQIAPDLPEIGVMLPANPL 322

Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSS--SICKEIPLIIDGGISKIGLESTIV 181
           +  L++    PL + S N SG+    + +  LS+   I     L              IV
Sbjct: 323 QHLLLQQVARPLVMTSGNGSGKPPALSNEQALSALSDIADHWLLHDRD----------IV 372

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPG 224
               +  VR    G    E L+RA      Y  D    P  PG
Sbjct: 373 QRADDSLVRFTAHGA---EMLRRARG----YVPDAFELP--PG 406


>gi|325294647|ref|YP_004281161.1| Acylphosphatase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065095|gb|ADY73102.1| Acylphosphatase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 756

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 14/153 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+R   E+L+ G  IA+      GL       D+ N  A++ L + K+R    P     
Sbjct: 204 DAIRLTIEYLEKGKIIALK-----GLGGFHLICDATNEKAVKELRKRKQR-EEKPFAVMF 257

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            D    KK+A +  L     K     P+ ++L+    TD+    +   KT    +P    
Sbjct: 258 PDFETTKKYAYISSLEKRALKSV-ESPI-VILEKKENTDLAYSISPENKTIGAFLPYTPL 315

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
              +++ +G P+   SAN + +  I   +  +S
Sbjct: 316 HHIILKDFGKPIVATSANLTDEPIIKENEEAIS 348


>gi|260768576|ref|ZP_05877510.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Vibrio
           furnissii CIP 102972]
 gi|260616606|gb|EEX41791.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Vibrio
           furnissii CIP 102972]
          Length = 766

 Score = 82.0 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 23/173 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+ +A E L AG  IA+      GL       D+ +  A+ RL E+K R    PL   VS
Sbjct: 202 AIERAAEQLIAGGVIALK-----GLGGFHLVCDATSLQAVARLRELKHRAR-KPLAVMVS 255

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST----TDIHPLSTANLKTACFR--- 118
           D++  K +   + L     K     P+ L+     T      +      ++         
Sbjct: 256 DVAQAKHYVQGEALEWQTLKSQA-SPIVLMHKAEHTDAGRAPVADNVAPDVDCLGVMLAY 314

Query: 119 VPCGFTK-KLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
            P        ++  G   PL + SAN SG    T  + +  +     +  ++D
Sbjct: 315 TPLHLLLIDALQQRGCFAPLVMTSANVSGLPLATEAQQVF-AMFGASLDSVLD 366


>gi|240047165|ref|YP_002960553.1| hypothetical protein MCJ_000330 [Mycoplasma conjunctivae HRC/581]
 gi|239984737|emb|CAT04711.1| HYPOTHETICAL PROTEIN MCJ_000330 [Mycoplasma conjunctivae]
          Length = 254

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS--VDPLSLHLAKL 86
           T+TV G+     N   +  LY IK R     +I  + +I          V P   + A  
Sbjct: 105 TDTVVGIGTFVNNSN-LELLYSIKNREKNKKIIILLGNIEQANSFVDQEVFPKLYYSADK 163

Query: 87  FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQI 146
           +WPG  TL+L   +          N      R+P       +     P  + SAN SG+ 
Sbjct: 164 YWPGNTTLLLKSKN----------NNGKIGLRIPKQDELIKLLNNKGPAYVTSANISGK- 212

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              N++  +      ++  I + G    G+ STI+N + +  +R
Sbjct: 213 QPLNIQDAIKVFW--QVKNIYNFGEG-SGIPSTIINFEDKSIIR 253


>gi|148241003|ref|YP_001220504.1| carbamoyltransferase hypF [Bradyrhizobium sp. BTAi1]
 gi|146411379|gb|ABQ39832.1| Carbamoyltransferase hypF [Bradyrhizobium sp. BTAi1]
          Length = 755

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 16/161 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +++ + +AL  A + L  GL +A     V G+       D+   +A+ RL + K RP   
Sbjct: 204 LAVENDDALAAAVDLLRRGLTVA-----VKGIGGYHLLCDATRESAVARLRQSKNRP-HK 257

Query: 59  PLICHVSDISMV--KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
           P    V     +  ++ A++D +    A L  P    +++     + + P   + +    
Sbjct: 258 PFAVMVPTDDKLAWRRLAAIDVVEE--AALLDPSRPIVLVRKRPESPLAPAVASGMAYVG 315

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
             +P       L++ +  P+   SAN SG+  +T+   +  
Sbjct: 316 LMLPYSPLHHLLLDAFEKPVVATSANISGEPVLTDAADVER 356


>gi|126174110|ref|YP_001050259.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS155]
 gi|125997315|gb|ABN61390.1| (NiFe) hydrogenase maturation protein HypF [Shewanella baltica
           OS155]
          Length = 837

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 22/194 (11%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           TD   L  A + L  G  +AI      GL       D+RN  A+  L   K+R A  PL 
Sbjct: 263 TDLAVLTAAADRLHQGQILAIK-----GLGGFHLICDARNDNAVNTLRLRKQRQA-KPLA 316

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
             ++DI M + + +       +       P+ +++   +  D+      NL      +P 
Sbjct: 317 VMMADIQMAQHYVTGTDAEWQVL-SSQERPI-VLMSSRAEHDLSLAVAPNLNKLGVFLPY 374

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L+  +  PL   SAN SG+  IT+   ++   +   +  I+D           I
Sbjct: 375 TPLHHLLLGLFKGPLVATSANVSGEPIITDCDELIRH-LSHVMDAIVDHNRP-------I 426

Query: 181 VNVQCEKKVRILRP 194
           +N   +  V++++P
Sbjct: 427 INGCDDSVVQVIQP 440


>gi|198282996|ref|YP_002219317.1| (NiFe) hydrogenase maturation protein HypF [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667633|ref|YP_002425200.1| [NiFe] hydrogenase maturation protein HypF [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247517|gb|ACH83110.1| (NiFe) hydrogenase maturation protein HypF [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519846|gb|ACK80432.1| [NiFe] hydrogenase maturation protein HypF [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 803

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 79/203 (38%), Gaps = 16/203 (7%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           T  +A+  A   L  G  + I      GL       D+ N  A+  L   K RP   PL 
Sbjct: 211 TQLDAVDAATNLLKCGEIVLIK-----GLGGFHLACDATNDRAVSGLRLRKHRP-HKPLA 264

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
               D+ +V+++A V      L +     P+ ++L+ L    + P     ++   F +P 
Sbjct: 265 LMARDLEVVRRYAHVSRAEEKLLQSH-QAPI-VLLNRLDNDSLAPGIAPGMRRLGFMLPY 322

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LEST 179
                 L+     P+ + S N S    +T+    + + +      ++    + I  ++ +
Sbjct: 323 TPLHHLLMRRMDRPIVLTSGNLSDAPQVTDDAAAVRA-LRGVTDWMLTHDRAIINRVDDS 381

Query: 180 IVNVQCEKKVRILRPGGLEIETL 202
           +V +  +  + + R  G   E+L
Sbjct: 382 VVQMAGDDTMILRRGRGYAPESL 404


>gi|260789486|ref|XP_002589777.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae]
 gi|229274960|gb|EEN45788.1| hypothetical protein BRAFLDRAFT_90450 [Branchiostoma floridae]
          Length = 145

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 9/126 (7%)

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSA 140
            L +   PGP+T+V+    T  ++     +      RVP   F ++L ET   P+A+ SA
Sbjct: 2   ELLQDLLPGPVTVVMQR--TAALNTNLNPSTDLVGIRVPQHKFMRQLAETCMEPIALTSA 59

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE----STIVNVQCEKKVRILRPGG 196
           N S   +  +++     ++  ++ L++DGG  +        ST+V++  E + R+LR G 
Sbjct: 60  NTSAAGNTIDIQE--FENLWPQLDLVLDGGRLESTQAVREGSTVVDLSVEGQFRVLRVGC 117

Query: 197 LEIETL 202
             + T+
Sbjct: 118 AYMSTV 123


>gi|313606730|gb|EFR83446.1| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes FSL
           F2-208]
          Length = 52

 Score = 81.6 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 275 LKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAAPRNQSQ 326
           + E A +L+  ++  D +    I     P   LG AI NRLE+AA  R  ++
Sbjct: 1   MDEIATSLYKGLRAFDHAEVDIIFAEVYPETELGAAIMNRLEKAAGNRRITE 52


>gi|332666647|ref|YP_004449435.1| SUA5/yciO/yrdC domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335461|gb|AEE52562.1| SUA5/yciO/yrdC domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 200

 Score = 81.6 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 4/152 (2%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           + L +G  + +PT+T++ +A    +   + RL ++K++   +     VS + M+K++   
Sbjct: 22  KILSSGGLVLLPTDTLWSIACLPSHSNTLNRLIQLKRQKYADNFELLVSSVGMLKQYVEH 81

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPL 135
               L     +   PLT++ D  +    + L  A       R V   F   L+E    PL
Sbjct: 82  LHPRLETLLAYHLRPLTMIFDNPTNLSSNALDAAG--NIHIRLVQDPFCAALLEHLNQPL 139

Query: 136 AIPSANRSGQISITNVKHILSSSICKEIPLII 167
               A+    +   N   I S  I   +  ++
Sbjct: 140 ISTFAHVRDSVPPMNFGAISSEIIQG-VDYVV 170


>gi|319790090|ref|YP_004151723.1| (NiFe) hydrogenase maturation protein HypF [Thermovibrio
           ammonificans HB-1]
 gi|317114592|gb|ADU97082.1| (NiFe) hydrogenase maturation protein HypF [Thermovibrio
           ammonificans HB-1]
          Length = 747

 Score = 81.6 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 24/200 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  A+++ C ++  G  +A     V GL       D+ N  A+R L   K R    P   
Sbjct: 198 EDEAVKEVCRWITQGKIVA-----VKGLGGFHLICDATNEKAVRELRRRKNR-EEKPFAV 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTANLKTACFRV 119
              D++ +K+HA + P    L ++   G   P+ ++L     + + P  + + +T    +
Sbjct: 252 MFKDLNQLKEHAYLSP----LEEIAVTGVESPI-VILRKKKGSTLAPSVSPDTETVGAFL 306

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGL 176
           P       +      PL   S N + +  +      +  ++   +   +     I++   
Sbjct: 307 PYTPLHHLICREVNRPLVATSCNITDEPIMKENSEAI-EALGSLLDGALCHNRPIARRCD 365

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           +S +V V  ++ V I R  G
Sbjct: 366 DS-VVRVIGDRVVPIRRSRG 384


>gi|157737664|ref|YP_001490347.1| transcriptional regulatory protein HypF [Arcobacter butzleri
           RM4018]
 gi|157699518|gb|ABV67678.1| transcriptional regulatory protein HypF [Arcobacter butzleri
           RM4018]
          Length = 749

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 19/179 (10%)

Query: 1   MQIMSITDS------NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLY 49
           M + +I +S       A+ +    +  G  IA     V G+       D+ N   + +L 
Sbjct: 188 MTLYNINNSILSYNIKAIEQTANLIKDGYVIA-----VKGIGGFHIVCDATNDKVVNKLR 242

Query: 50  EIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109
           EIK RP   P     ++I+ +K++ +++     +       P+ LV    +T     ++ 
Sbjct: 243 EIKNRP-NKPFAVMFNNINSIKQYTNMNYQEEEILTSK-EKPIVLVKKRPNTNLSSYIAP 300

Query: 110 ANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              K  CF   CG    L +   +P+   SAN   +  I +   I+   +   +  ++D
Sbjct: 301 NISKLGCFIANCGIHHLLFKYLQNPIVATSANLKDEPIIRSKDEIIG-KLGNIVDFVLD 358


>gi|321309523|ref|YP_004191852.1| putative translation factor/ribosome maturation factor [Mycoplasma
           haemofelis str. Langford 1]
 gi|319801367|emb|CBY92013.1| putative translation factor / ribosome maturation factor
           [Mycoplasma haemofelis str. Langford 1]
          Length = 156

 Score = 81.3 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 39/179 (21%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPTAIRR----LYEIKKRPAMNPLICHVSDISMVKKHA 74
           + +G    I T++V+G+         I +    +Y +KKRP    LI  +S  S +    
Sbjct: 9   IKSGKAAIIATDSVFGI---------ISKDKDLIYSLKKRPKEKQLILFISSASEL---- 55

Query: 75  SVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETY 131
              P+   L +L    WPG  T++                     +RVP       I   
Sbjct: 56  -PSPIPKDLEELVTSRWPGTFTIIYKGQ----------------GYRVPESNLLIKILKK 98

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
             PL   SAN SG+  + +++     SI  E  L I G +   G  STI +   +K VR
Sbjct: 99  TGPLWSSSANLSGEPVVKDLEEA--KSIFGEGILYIKGDVVPTGTPSTIYDYDNKKLVR 155


>gi|148377715|ref|YP_001256591.1| hypothetical protein MAG_4520 [Mycoplasma agalactiae PG2]
 gi|148291761|emb|CAL59150.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 151

 Score = 80.9 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+     N   ++ +Y +K RP    +I  V  +   ++    +  +   A  +W
Sbjct: 11  TDTVTGIGG-PVNDNTLKSIYYLKNRPISKKIIILVGSVEQAREFKEWNHEADEFASKYW 69

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PG  +++++                   FR+P             P+ + SAN SGQ  I
Sbjct: 70  PGAYSVIVNNQ----------------GFRMPNNLKLCQFLLKNGPMYVTSANISGQEPI 113

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              +   +S     +  + D G       S I N+  +K +R
Sbjct: 114 EISE---ASKYFPLVKNVYDFGKGN-NKASQIYNLDEKKWIR 151


>gi|197285366|ref|YP_002151238.1| hydrogenase maturation protein [Proteus mirabilis HI4320]
 gi|194682853|emb|CAR43165.1| hydrogenase maturation protein [Proteus mirabilis HI4320]
          Length = 766

 Score = 80.9 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 16/204 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL +AC+ L AG  +A     V G+       D+RN  ++ RL   K RPA  PL   
Sbjct: 200 ERALTQACQALLAGKIVA-----VKGIGGFHLVCDARNSESVARLRARKHRPA-KPLAVM 253

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
           ++    ++K +        + +       P+ L+   ++   +  L    L      +P 
Sbjct: 254 LTGTEQIQKPSDNAEFYSKVIETLTSTAAPIVLIPKEIAPISLSELIAPGLTEVGVMLPA 313

Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-ST 179
              + L+      PL + S N +G       +  L   +     L +      I     +
Sbjct: 314 NPLQHLLAHETQIPLVMTSGNATGHTPALTNEEALI-QLGDIAELFLMHNREIIQRADDS 372

Query: 180 IVNVQCEKKVRILRPGGLEIETLK 203
           +V ++  + V I R  G   + + 
Sbjct: 373 LVRIEDGQCVMIRRSRGYVPDAIA 396


>gi|269140246|ref|YP_003296947.1| hydrogenase maturation protein [Edwardsiella tarda EIB202]
 gi|267985907|gb|ACY85736.1| hydrogenase maturation protein [Edwardsiella tarda EIB202]
 gi|304560076|gb|ADM42740.1| (NiFe) hydrogenase metallocenter assembly protein HypF
           [Edwardsiella tarda FL6-60]
          Length = 774

 Score = 80.5 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 15/154 (9%)

Query: 14  KAC-EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +A    LDAG  +A     V GL       D+ N  AI RL E K+RP   PL   + D+
Sbjct: 204 QAVTRALDAGHIVA-----VKGLGGFHLACDAENDAAIARLRERKRRP-GKPLALMLPDL 257

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKK 126
           S + ++    P      +     P   ++ + +++ + P     L      +P       
Sbjct: 258 SWLARYCRTAPD--DGLQALLSSPAAPIVLIPASSAVPPRVAPGLDEVGVMLPSTPLHHL 315

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160
           L+   G PL + S N +GQ    +    L+  + 
Sbjct: 316 LMARIGRPLVMTSGNANGQPPALDNAQALTDLVD 349


>gi|291320378|ref|YP_003515641.1| hypothetical protein MAGa4740 [Mycoplasma agalactiae]
 gi|290752712|emb|CBH40686.1| Conserved hypothetical protein [Mycoplasma agalactiae]
          Length = 151

 Score = 80.5 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 25/164 (15%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+     N   ++ +Y +K RP    +I  V  +   ++    +  +   A  +W
Sbjct: 11  TDTVTGIGG-PVNDNTLKSIYYLKNRPISKKIIILVGSVGQAREFKEWNHEADEFAAKYW 69

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG--FTKKLIETYGHPLAIPSANRSGQI 146
           PG  +++++                   FR+P      + LI+    P+ + SAN SGQ 
Sbjct: 70  PGAYSVIVNNQ----------------GFRMPNNLKLCQFLIK--NGPMYVTSANISGQE 111

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
              ++     S     +  + D G       S I N+  +K +R
Sbjct: 112 -PIDISEA--SKYFPLVKNVYDFGKGN-NKASQIYNLDEKKWIR 151


>gi|113970155|ref|YP_733948.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. MR-4]
 gi|113884839|gb|ABI38891.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. MR-4]
          Length = 836

 Score = 80.5 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 17/165 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            L  A E L  G  +AI      GL       D+ N  A+ +L + K+R A  PL   + 
Sbjct: 245 VLSAAAEKLAQGQILAIK-----GLGGFHLMCDATNTLAVNQLRQRKQRKA-KPLAVMMP 298

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            I + K++ +   +    L+    P    +++  L   ++      N+      +P    
Sbjct: 299 SIEVAKRYVTGTQVEWQTLSSQERP---IVLMQALDKHNLSHEIAPNIPKLGIFLPYTPL 355

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              L+  +  PL   SAN SG+  IT+   ++S  +   +  I+D
Sbjct: 356 HHLLLGQFNGPLVATSANVSGEPIITDCDELIS-QLGHVVDAIVD 399


>gi|154174910|ref|YP_001408291.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter curvus
           525.92]
 gi|112802760|gb|EAU00104.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter curvus
           525.92]
          Length = 739

 Score = 80.5 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 16/173 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56
           +I+S  D  A ++A + ++ G  +A     V GL       D+ +  A+  L + K RP+
Sbjct: 193 KILSKNDEAA-KQAAKLINEGKILA-----VKGLGGFHLVCDAHDENAVNLLRKRKNRPS 246

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P      ++   +  A +      L       P+ ++L     + + P    NL    
Sbjct: 247 -KPFAIMSKNLQSARNLAQISDAQAKLLSSNL-KPI-VLLQSAKDSPLAPSVAPNLNKVG 303

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
             +   G    L E   H +   SAN SG++ I + K  L   +       +D
Sbjct: 304 VMLAFSGIHLLLFEYLNHDIVATSANVSGEVVIYDEKQ-LQDKLGGVFDYYLD 355


>gi|153855436|ref|ZP_01996567.1| hypothetical protein DORLON_02581 [Dorea longicatena DSM 13814]
 gi|149752090|gb|EDM62021.1| hypothetical protein DORLON_02581 [Dorea longicatena DSM 13814]
          Length = 792

 Score = 80.1 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 23/202 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+    + +  G  +AI      G+       D+ N  A++RL  +K RPA  P     
Sbjct: 212 TAIIATRKMIHDGGIVAIK-----GIGGFHLCCDATNEEAVQRLRTLKNRPA-KPFAVMA 265

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLKTACFRVPC 121
            D+  VK+   V+ +   +       P+ L+     + D   +              +P 
Sbjct: 266 RDVEAVKRECLVNEVQEEILDGH-QKPILLLEKRKKSADSTGLCKSVAPGNPKVGVMLPY 324

Query: 122 GFTKKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKI 174
              + L+  Y      P  L + S N SG     + K  +   +     LI+      +I
Sbjct: 325 APVQMLLFQYDDGIQMPDFLVMTSGNISGAPICRDDKEAV-EELSHLCDLILSHDRKIRI 383

Query: 175 GLESTIVNVQCEKKVRILRPGG 196
             + ++++    +   I R  G
Sbjct: 384 RADDSVMDFYKGEPYMIRRSRG 405


>gi|153809929|ref|ZP_01962597.1| hypothetical protein RUMOBE_00310 [Ruminococcus obeum ATCC 29174]
 gi|149834107|gb|EDM89187.1| hypothetical protein RUMOBE_00310 [Ruminococcus obeum ATCC 29174]
          Length = 802

 Score = 80.1 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 20/199 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+  A + +  G  +AI      G+       D+ N TA+R+L ++K+RP M P     
Sbjct: 200 EAITYARKTIAGGGIVAIK-----GIGGFHLCCDASNETAVRKLRQLKRRP-MKPFAVMA 253

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            ++  V+K   V      +       P+ L+        + P            +P    
Sbjct: 254 KNLEAVRKECEVSAEQTRILDGH-QKPILLLDKKKEAKILCPSVAPGNPKVGVMLPYAPV 312

Query: 125 KKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177
           + LI TY      P  L + S N SG     + +    + +      ++      +I  +
Sbjct: 313 QLLIFTYDDGIEMPEFLVMTSGNTSGAPICRDDQEA-EAELSGFCDCMLSHDRKIRIRAD 371

Query: 178 STIVNVQCEKKVRILRPGG 196
            ++++   ++   I R  G
Sbjct: 372 DSVMDFYEDRPYMIRRSRG 390


>gi|271501242|ref|YP_003334267.1| (NiFe) hydrogenase maturation protein HypF [Dickeya dadantii
           Ech586]
 gi|270344797|gb|ACZ77562.1| (NiFe) hydrogenase maturation protein HypF [Dickeya dadantii
           Ech586]
          Length = 766

 Score = 80.1 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 12/200 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+ +A   L AG  +A     V GL       D+ +  A+ RL E K RPA  PL   
Sbjct: 206 DDAIMQAATALCAGQIVA-----VKGLGGFHLACDATHAQAVTRLRERKHRPA-KPLAVM 259

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +     + + + V+  +  L  +  P    ++L L     +       L      +P   
Sbjct: 260 LPGADWLAQCSCVENSAPALRLMQSPAAPVVLLPLRHDGVLAAGIAPGLDEVGLMLPANP 319

Query: 124 TKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            +  L+   G PL + S N SG+    +    L+         ++         + ++V 
Sbjct: 320 LQHMLLAAVGRPLVMTSGNASGKPPALDNTQALAELAAIADLWLLHDRDIVQRADDSVVR 379

Query: 183 VQCEKKVRILRPGGLEIETL 202
           +Q ++   + R  G   + L
Sbjct: 380 IQGDRAEMLRRARGYVPDAL 399


>gi|114047655|ref|YP_738205.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. MR-7]
 gi|113889097|gb|ABI43148.1| (NiFe) hydrogenase maturation protein HypF [Shewanella sp. MR-7]
          Length = 840

 Score = 80.1 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 17/165 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            L  A E L  G  +AI      GL       D+ N  A+ +L + K+R A  PL   + 
Sbjct: 249 VLSAAAEKLAQGQILAIK-----GLGGFHLMCDATNTLAVNQLRQRKQRKA-KPLAVMMP 302

Query: 66  DISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            I + K++ +        L+    P    +++  L   ++      N+      +P    
Sbjct: 303 SIEVAKRYVTGTQAEWQTLSSQERP---IVLMQALDKHNLSHQIAPNIPKLGIFLPYTPL 359

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              L+  +  PL   SAN SG+  IT+   ++S  +   +  I+D
Sbjct: 360 HHLLLGQFNGPLVATSANVSGEPIITDCDELIS-QLGHVVDAIVD 403


>gi|293363971|ref|ZP_06610707.1| conserved hypothetical protein [Mycoplasma alligatoris A21JP2]
 gi|292552461|gb|EFF41235.1| conserved hypothetical protein [Mycoplasma alligatoris A21JP2]
          Length = 152

 Score = 79.7 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 21/159 (13%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+     N  +++++Y +K RP    ++  V  I   ++    +  +   A+ +W
Sbjct: 11  TDTVCGIGG-PINNESLKKIYFLKDRPLDKKIMIVVGSIDQARQFKQWNNKADEFAQKYW 69

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PG ++++++                   FR+P     +       P+ + SAN SG    
Sbjct: 70  PGAVSIIVNNQ----------------GFRMPNSLKMQKFLLKNGPMYLTSANLSGND-P 112

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            N++     ++ KEI  + D         S I NV   +
Sbjct: 113 LNLEQA--KNVFKEITNVYDFCK-PSNKPSDIYNVDTNQ 148


>gi|309791091|ref|ZP_07685626.1| Hydrogenase maturation protein HypF [Oscillochloris trichoides DG6]
 gi|308226875|gb|EFO80568.1| Hydrogenase maturation protein HypF [Oscillochloris trichoides DG6]
          Length = 771

 Score = 79.7 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 17/192 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           L  A   L  G  +A+      G+       D RN  A+ RL   K RPA  PL     D
Sbjct: 203 LNAALTALRQGQIVALK-----GIGGYQLLVDPRNAEAVARLRLRKHRPA-KPLALMARD 256

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPC-GFT 124
           +        +D ++  L       P+ L+  +   +  +  L           +PC    
Sbjct: 257 LEQAAALVQIDQVAAELLTSVA-APIVLLPRIPHPSIALADLVAPGHPYLGVMLPCSPLH 315

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNV 183
             L+ ++  PL   S N S +    +        + +     +      +  ++ ++V V
Sbjct: 316 HLLLRSFDGPLVATSGNLSDEPICIDDTEA-HQRLGQIADAFLSHNRPIERHVDDSVVQV 374

Query: 184 QCEKKVRILRPG 195
                 R+LR  
Sbjct: 375 -VAGIPRMLRRA 385


>gi|157148250|ref|YP_001455569.1| hypothetical protein CKO_04067 [Citrobacter koseri ATCC BAA-895]
 gi|157085455|gb|ABV15133.1| hypothetical protein CKO_04067 [Citrobacter koseri ATCC BAA-895]
          Length = 780

 Score = 79.3 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 20/153 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL+ A   L AG  +AI      G+       D++N  A+  L   K+RPA  PL   + 
Sbjct: 236 ALQAAVAMLKAGGIVAIK-----GIGGFHLACDAQNDEAVAMLRARKRRPA-KPLAVMLP 289

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D   +         +  L     P    +++D      +       L      +P    +
Sbjct: 290 DAEGL------PDAARRLL--TTPAAPIVLVDKQHVASLCEGIAPGLAEVGVMLPANPLQ 341

Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSS 157
             L++    PL + S N SG+      +  L  
Sbjct: 342 HLLLQALNCPLVMTSGNLSGKPPAITNQQALDD 374


>gi|257054854|ref|YP_003132686.1| (NiFe) hydrogenase maturation protein HypF [Saccharomonospora
           viridis DSM 43017]
 gi|256584726|gb|ACU95859.1| (NiFe) hydrogenase maturation protein HypF [Saccharomonospora
           viridis DSM 43017]
          Length = 762

 Score = 79.3 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 71/199 (35%), Gaps = 21/199 (10%)

Query: 14  KACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +A E L AG+ +A     V GL       D+ NP A+  L   K+R A  P    V+ + 
Sbjct: 213 RAVELLRAGMVVA-----VKGLGGYHVAVDATNPHAVETLRARKRR-ADKPFAVMVATVD 266

Query: 69  MVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
             ++   VD  +   L     P    +VL      ++        +     +P      L
Sbjct: 267 EARRLCVVDEAAERALTDRRRP----IVLLDRRGKELAEAVAPGNRQLGVFLPYTPLHHL 322

Query: 128 IE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIVNVQ 184
           +   +G P+ + S N S +         LS  +       +  D  I     +S +V   
Sbjct: 323 LSVEFGAPMVLTSGNASDEPIAFTDADALS-RLSGIADAFLVHDRPIHAWADDS-VVRPW 380

Query: 185 CEKKVRILRPGGLEIETLK 203
            +  V + R  G   E ++
Sbjct: 381 RDTVVPVRRSRGYTPEPIR 399


>gi|146312826|ref|YP_001177900.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter sp. 638]
 gi|145319702|gb|ABP61849.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter sp. 638]
          Length = 751

 Score = 79.3 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 14/152 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            NAL+ A + L AG  +AI  +++ G  L  D+RN  AI RL E K RPA  PL   V+D
Sbjct: 197 ENALQVAVKLLKAGGVVAI--KSLGGFHLVCDARNIQAISRLRERKHRPA-KPLAVMVAD 253

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           ++ +       P  +         P+ L        D+       L T    +P    + 
Sbjct: 254 VARL-------PAPIQKLLRSPAAPIVLTSKTF-LPDLPHEIAPGLDTIGVMLPSNPLQH 305

Query: 127 LI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
           L+ +    PL + S N SG+      +  L  
Sbjct: 306 LLMDDMACPLVMTSGNLSGKPPAMTNQQALDD 337


>gi|119509241|ref|ZP_01628391.1| hydrogenase maturation protein [Nodularia spumigena CCY9414]
 gi|119466083|gb|EAW46970.1| hydrogenase maturation protein [Nodularia spumigena CCY9414]
          Length = 780

 Score = 79.3 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      GL       D+    A+++L + K+R    PL    
Sbjct: 203 DDVDAVCTLLQKGEIVAIK-----GLGGIHLACDATQEAAVQKLRQRKRR-YHKPLALMA 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            DI+++ ++ +V+     L       P+ ++L       I P  +  L    F +P    
Sbjct: 257 RDIAVIAEYCTVNTQEKELLASSA-API-VLLQKNPHCLIAPSVSPGLNYLGFMLPYTPL 314

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              ++     P+ + S N + +    + +      +       +
Sbjct: 315 HHLILRRMNRPIVLTSGNIADEPQCIDNEEA-REKLGHIADYFL 357


>gi|296104387|ref|YP_003614533.1| hydrogenase maturation protein HypF [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058846|gb|ADF63584.1| hydrogenase maturation protein HypF [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 626

 Score = 79.3 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 20/158 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           +T   AL  A + L  G  +AI      GL       D+ NP A+  L   K+RP   PL
Sbjct: 82  VTRELALNAAVQMLKNGGIVAIK-----GLGGFHLACDALNPQAVATLRARKQRP-GKPL 135

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              +     + +     P+   L     P    +++               L +    +P
Sbjct: 136 AVMIPSADGLPQ-----PVQTRLRS---PAAPIVLIPKAWLPTFPDDIAPGLDSLGVMLP 187

Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
               + L+ +    PL + S N SG+    +    L  
Sbjct: 188 ANPLQHLLMQETQRPLVMTSGNLSGRPPAISNPQALEQ 225


>gi|118474454|ref|YP_892105.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413680|gb|ABK82100.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 741

 Score = 79.3 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/174 (26%), Positives = 63/174 (36%), Gaps = 23/174 (13%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57
           I+   D  A+R     L +G  IAI      G+       D+ N  AI  L E K RP  
Sbjct: 192 IVLANDEEAIRLCANELKSGKIIAIK-----GIGGFHLVCDATNQKAISSLRERKNRP-D 245

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P      DI M    A ++      L     P     ++ L S   +      NLK   
Sbjct: 246 KPFAIMCKDIQMASLVAYINEFEEDALTSNIKP-----IILLKSKEILPANLALNLKKIG 300

Query: 117 FRV-PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
             + P      L E    P+   SAN SG+  I +       SI K++  + DG
Sbjct: 301 IFLPPTSLHLLLFEYIDFPIIATSANISGEPIIIDF-----ESISKKLIKVCDG 349


>gi|145298789|ref|YP_001141630.1| hydrogenase maturation protein HypF [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851561|gb|ABO89882.1| hydrogenase maturation protein HypF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 808

 Score = 79.3 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 24/176 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A   L  G  IA     V G+       D+RN  ++ RL  +K+R    PL   
Sbjct: 220 EEALQMAARALQTGALIA-----VKGMGGYHLICDARNERSVARLRTLKRRAR-KPLAVM 273

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL----------STTDIHPLSTANLK 113
           +  ++  K H +       L       P+TL+              S   +       + 
Sbjct: 274 MGSLAEAKLHVTGSADEWKLLASQA-RPITLLRKRKNDDRLSGSRPSAAPLAEGIAPGIP 332

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                +P     + L++    PL   SAN  G   +     ++   +   I  I+D
Sbjct: 333 YLGVMLPYTPLHQLLLDACAIPLVATSANGRGSPILIEFDAVVRE-LGGNIDGILD 387


>gi|299471467|emb|CBN79418.1| translation factor [Ectocarpus siliculosus]
          Length = 184

 Score = 79.3 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 19/120 (15%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVS 65
           +DS  L +A   L  G    IPT+T Y  A D  +   + R+ +IK  +    PL     
Sbjct: 47  SDSWRLIEAGNILRKGGVGVIPTDTCYTFACDILSRKGVERILQIKNEQGRHKPLSLLCK 106

Query: 66  DISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           DIS +  +A  +D +   L +                   H   T   K    R+P    
Sbjct: 107 DISTMNTYAKGIDKVPRMLIEH-----------------KHHKKTWKRKEIGIRLPNAPV 149


>gi|213865416|ref|ZP_03387535.1| putative ribosome maturation factor [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 58

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 11 ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
          A+  A + L+    IA PTE V+G+  D  + TA+ RL E+K+RP    LI   ++  
Sbjct: 1  AIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYE 58


>gi|163782645|ref|ZP_02177642.1| transcriptional regulatory protein HypF [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882218|gb|EDP75725.1| transcriptional regulatory protein HypF [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 745

 Score = 78.9 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 27/227 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+R   + +  G  +A+      G+       D+ N  ++R L E K+R    P    
Sbjct: 201 EEAIRVLLDGIREGKIVALK-----GIGGFHLVCDATNEESVRLLRERKRR-QEKPFAVM 254

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
             D+S V+++AS       L K     P   ++ +    ++ P     LK     +P   
Sbjct: 255 FRDLSQVEEYAS----PTELEKALLLSPERPIVLIEKKRELAPSVAPGLKRVGAFLPYSP 310

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180
               ++     P+   S N S +  + + +  L   +     LI+  +  I +   +S +
Sbjct: 311 LHHIILRELEFPVVATSGNLSDEPIVKDNEEAL-ERLSAFADLILLHNREIKRRCDDS-V 368

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLK 227
           V V       I R  G     ++  + +  +            GMLK
Sbjct: 369 VKVIGGVPTPIRRSRGYAPMPIELPVKLPKKVLAVG-------GMLK 408


>gi|226225825|ref|YP_002759931.1| hydrogenase maturation protein HypF [Gemmatimonas aurantiaca T-27]
 gi|226089016|dbj|BAH37461.1| hydrogenase maturation protein HypF [Gemmatimonas aurantiaca T-27]
          Length = 859

 Score = 78.9 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + NALR A   L AG  +A       G+       D+RN  A+ RL   K RP   PL  
Sbjct: 240 NENALRAALTVLRAGGIVAAK-----GIGGYHLLCDARNADAVARLRLRKDRP-HKPLAV 293

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLL-STTDIHPLSTANLKTACFRVP 120
            V  +S ++  A V   ++   +   P  P+ LV     +   +       L +    +P
Sbjct: 294 LVDTLSTLRTFADVRASAVVSLES--PAHPIVLVPTSKGAAQPLAHNVAPGLDSVGVMLP 351

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
                 L+     PL   S N S +         L 
Sbjct: 352 AFPLHALL-AADGPLVCTSGNLSDEPIAWRDVDALR 386


>gi|221103657|ref|XP_002161835.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 139

 Score = 78.9 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
           +S ++ +   PGP+TLV     ++ ++        +   R+P C F + L +    P+A+
Sbjct: 2   ISDNVLEDLLPGPVTLVFQR--SSLLNSYLNPTSNSIGVRIPKCAFIQTLAQKCQQPIAL 59

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVRILR 193
            SAN S  +S  ++K      +  ++ LI+DGG      +  L ST+V++  E +  I+R
Sbjct: 60  TSANISSAMSSLDIKE--FEELWPKLDLIVDGGTLGSSEQSRLGSTVVDLTKEGEFTIIR 117

Query: 194 PGGLEIETLK 203
            G    E + 
Sbjct: 118 EGCAYNEVVN 127


>gi|114776859|ref|ZP_01451902.1| Putative translation factor [Mariprofundus ferrooxydans PV-1]
 gi|114552945|gb|EAU55376.1| Putative translation factor [Mariprofundus ferrooxydans PV-1]
          Length = 170

 Score = 78.9 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 62/178 (34%), Gaps = 15/178 (8%)

Query: 21  AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA-SVDPL 79
           AG  IA  T T+ G+A  + N  +  RL   K+R    P +      +   + A    P 
Sbjct: 3   AGGVIAHHTGTLPGIAAATLNQQSTDRLIRFKQRRG--PFLLLADQKATAARIARYFSPE 60

Query: 80  SLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIP 138
                   WPGP+TLV                      RV      ++L    G  LA  
Sbjct: 61  LRRQMHAAWPGPVTLVFPGRPGLPACCY---RKGLVAVRVDSSLQARQLAHACGGLLASS 117

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDG---GISKIGLESTIVNVQCEKKVRILR 193
           S NR G   +   +     ++       +DG   G+   G  S+I+ ++      I R
Sbjct: 118 SLNRRGGAHLRPDR-----NLQMRFHHYLDGRIIGLPPAGKASSIIRIRRNHSTVIRR 170


>gi|224372623|ref|YP_002606995.1| [NiFe] hydrogenase maturation protein HypF [Nautilia profundicola
           AmH]
 gi|223589878|gb|ACM93614.1| [NiFe] hydrogenase maturation protein HypF [Nautilia profundicola
           AmH]
          Length = 759

 Score = 78.9 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 25/193 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +    E +  G  +AI      GL       ++ N  A++ L   K+RP   P      D
Sbjct: 208 IELIAEKIKEGKIVAIK-----GLGGFHLVCNATNEEAVKELRRRKQRP-TKPFAMMFKD 261

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +  +K++  +      L       P+ LV   +    I       +      +P      
Sbjct: 262 LDTIKEYCDLSAKDTELITSK-EKPIVLVKKRVDLPQIAD----GIDRYGVFLPYTPVHY 316

Query: 127 LI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L+ E    P+   SAN S +  I +   ++   +   +  I+D           I+N   
Sbjct: 317 LLFEYIDFPIVATSANISDEPIIRDSNELV-EKLGNVVDYILDNDRD-------IINACD 368

Query: 186 EKKVRILRPGGLE 198
           +  V+ +    + 
Sbjct: 369 DSVVQAVEFEYIT 381


>gi|313678622|ref|YP_004056362.1| hypothetical protein MBOVPG45_0534 [Mycoplasma bovis PG45]
 gi|312950474|gb|ADR25069.1| conserved hypothetical protein [Mycoplasma bovis PG45]
          Length = 151

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 21/122 (17%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+     N   ++ +Y +K RP    +I  V  I   +     +  +   A  +W
Sbjct: 11  TDTVTGIGG-PVNENTLKCIYYLKNRPISKKIIILVGSIEQARAFKEWNNEADDFAAKYW 69

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG--FTKKLIETYGHPLAIPSANRSGQI 146
           PG  +++++                   FR+P      + L++    P+ + SAN SGQ 
Sbjct: 70  PGAYSIIVNGQ----------------GFRMPNNSQLCQFLLK--NGPMYVTSANISGQD 111

Query: 147 SI 148
            I
Sbjct: 112 PI 113


>gi|312111044|ref|YP_003989360.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp.
           Y4.1MC1]
 gi|311216145|gb|ADP74749.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus sp.
           Y4.1MC1]
          Length = 753

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 68/196 (34%), Gaps = 18/196 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A+ K  E L  G  +AI      GL       D+ N  A+R L + K+R A  P   
Sbjct: 199 DEKAIEKTAELLRTGRIVAIK-----GLGGYHLACDAENEEAVRELRKRKRRSA-KPFAL 252

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V DI   KK   +      L       P+ L     S   + P ++         +P  
Sbjct: 253 MVKDIETAKKLIDISAEEEKLLTSSA-RPIVLARARRSLPGVAPDNSD----LGIMLPYT 307

Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               L+  +G P  L + SANRS +  I        +        ++        ++ ++
Sbjct: 308 PLHHLLFHFGAPHVLVMTSANRSSEPIIYEDDKAAKALEGIADAWLVGERPIARRVDDSV 367

Query: 181 VNVQCEKKVRILRPGG 196
           V V       + R  G
Sbjct: 368 VRVTPFGPAVLRRARG 383


>gi|197119503|ref|YP_002139930.1| hydrogenase maturation protein HypF [Geobacter bemidjiensis Bem]
 gi|197088863|gb|ACH40134.1| hydrogenase maturation protein HypF [Geobacter bemidjiensis Bem]
          Length = 758

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 15/164 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +AL+ A E L  G  +A     V     Y LAVD+ N  A+ RL + K+R    P     
Sbjct: 202 DALKLALEALSQGKIVA-----VKGVGGYHLAVDAGNQAAVERLRQRKRRDE-KPFAMLA 255

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +D+ MV++HA    L   L       P+ +++  L+ + I  L         F +P    
Sbjct: 256 ADLEMVRRHAHCSELEGRLLLGV-ERPI-VLMRKLAGSSISDLVAPGNGWFGFMLPGNPL 313

Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           + L+   +G PL + S N S +         L   +     L +
Sbjct: 314 QHLLARGHGAPLVMTSGNLSDEPIAYRDGEAL-EMLSGIADLFL 356


>gi|295400430|ref|ZP_06810409.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977705|gb|EFG53304.1| (NiFe) hydrogenase maturation protein HypF [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 753

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 68/196 (34%), Gaps = 18/196 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A+ K  E L  G  +AI      GL       D+ N  A+R L + K+R A  P   
Sbjct: 199 DEKAIEKTAELLRTGRIVAIK-----GLGGYHLACDAENEEAVRELRKRKRRSA-KPFAL 252

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V DI   KK   +      L       P+ L     S   + P ++         +P  
Sbjct: 253 MVKDIETAKKLIDISAEEEKLLTSSA-RPIVLARARRSLPGVAPDNSD----LGIMLPYT 307

Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               L+  +G P  L + SANRS +  I        +        ++        ++ ++
Sbjct: 308 PLHHLLFHFGAPHVLVMTSANRSSEPIIYEDDKAAKALEGIADVWLVGERPIARRVDDSV 367

Query: 181 VNVQCEKKVRILRPGG 196
           V V       + R  G
Sbjct: 368 VRVTPFGPAVLRRARG 383


>gi|317054482|ref|YP_004118507.1| (NiFe) hydrogenase maturation protein HypF [Pantoea sp. At-9b]
 gi|316952477|gb|ADU71951.1| (NiFe) hydrogenase maturation protein HypF [Pantoea sp. At-9b]
          Length = 757

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 21/166 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           S+T   AL++A   L  G  +A     V GL       D+RNP A+ RL + K+RP+  P
Sbjct: 203 SVTGEAALQQAVAVLKNGGIVA-----VKGLGGFHLAVDARNPAAVERLRQRKRRPS-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               ++D   +         ++ L     P    +++D L    +       L      +
Sbjct: 257 FAVMLADSHGL------PAGTIRLLSS--PAAPIVLVDRLLVRGLSDNIAPGLNEIGVML 308

Query: 120 PCGFTKKL-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
           P    + L IE +  PL + S N+SG     +        +     
Sbjct: 309 PANPLQHLLIEDFAGPLVMTSGNQSGLPPALSNDQA-RDQLAGIAD 353


>gi|268679729|ref|YP_003304160.1| (NiFe) hydrogenase maturation protein HypF [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617760|gb|ACZ12125.1| (NiFe) hydrogenase maturation protein HypF [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 744

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +  T+  AL      + AG  +A+      G+       D+ N   + RL E KKR A  
Sbjct: 198 IVATNEAALHHLAALIRAGNIVAMK-----GMGGFHLVCDASNEKVVHRLRERKKR-ASK 251

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P       I  ++    V              P+ LV      T I P     L      
Sbjct: 252 PFAVMFKTIEAIEAVCEVGIKEKEAITSLL-RPIVLVKHQTKNTLIAPSVAPRLDRLGVF 310

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           +P       L E   +P+   SAN SG+  + + K ++   +   I   +D
Sbjct: 311 LPYTPLHVMLFEYLKNPMVATSANLSGEPILYDAKQVV-EKLSHVIDYYLD 360


>gi|78777628|ref|YP_393943.1| hydrogenase maturation protein HypF [Sulfurimonas denitrificans DSM
           1251]
 gi|78498168|gb|ABB44708.1| Hydrogenase maturation protein HypF [Sulfurimonas denitrificans DSM
           1251]
          Length = 742

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 22/182 (12%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56
           Q + I   N + K    +  G  +AI      G+       D+ +  A++ L E K RP 
Sbjct: 194 QKVEIDKKNIIEKVASLIKNGKILAIK-----GIGGFHIVCDANSDEALKNLREFKHRP- 247

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P      D+  +K  A V      L       P+ ++L   +   I  L   N+    
Sbjct: 248 TKPFAIMCKDLQQIKALAEVSEKEEQLL-TCKEAPI-VILKKRTCNHISSLLAPNIDRIG 305

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS--------SICKEIPLII 167
             +P       L     +P+   SAN   +  I   + I              +EI   +
Sbjct: 306 CFLPYTALHHLLFAHLQNPIVATSANLGDEPIIIKAEDIFKKLPFVEFTLDFEREIINGV 365

Query: 168 DG 169
           D 
Sbjct: 366 DD 367


>gi|159029144|emb|CAO87504.1| hypF [Microcystis aeruginosa PCC 7806]
          Length = 754

 Score = 78.6 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 72/201 (35%), Gaps = 18/201 (8%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAM 57
           +++  D   +  A   +  G  IAI      GL       D+RN  A+++L + K+RP  
Sbjct: 202 VLAEKDQALIATA-RAIQQGKIIAIK-----GLGGFHLVVDARNTEAVQKLRQRKQRP-D 254

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            P      ++ +VKKH  V  L   L +        +VL       + P  +        
Sbjct: 255 KPFAVMYPNLELVKKHGYVSSLESKLLQS---SAAAIVLIKQRKNYLSPSVSPGNPYLGV 311

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG- 175
            +P       L+   G P+   S N + +      K  L   +     L +      +  
Sbjct: 312 MLPYTPLHHLLLAELGFPIVATSGNLADEPICIEEKEAL-EKLGTIADLFLVHNRPIVRP 370

Query: 176 LESTIVNVQCEKKVRILRPGG 196
           ++ +I+     K + + R  G
Sbjct: 371 VDDSIIREMAGKAMILRRARG 391


>gi|262275761|ref|ZP_06053570.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Grimontia
           hollisae CIP 101886]
 gi|262219569|gb|EEY70885.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Grimontia
           hollisae CIP 101886]
          Length = 794

 Score = 78.2 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A++ A  ++  G  +A     V GL       D+ N   +  L   K+RP   P    +
Sbjct: 206 DAIQAAVHYIRQGKILA-----VKGLGGFHLVCDATNQDVVDTLRRRKQRP-DKPFAVMM 259

Query: 65  SDISMVKKHASVDPLSLHLAK------LFWP-GPLTLVLDLLSTTDIHPLSTANLKTACF 117
            D   V  +    P +L + +      +  P   +T  L+      I      NL     
Sbjct: 260 KDAEQVGLYCQPSPAALEMLQSVSSPVVIMPTRNVTASLNTEGCGVIATAVAPNLGELGI 319

Query: 118 RVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
            +P       L      PL + SAN SG    T+ +  L  
Sbjct: 320 MLPATPMHLLLCHDVALPLVMTSANLSGNPQCTDNREALED 360


>gi|270263104|ref|ZP_06191374.1| hypothetical protein SOD_d01200 [Serratia odorifera 4Rx13]
 gi|270042792|gb|EFA15886.1| hypothetical protein SOD_d01200 [Serratia odorifera 4Rx13]
          Length = 772

 Score = 78.2 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 12/153 (7%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL++A   L AG  +AI      G+       D+ +  A+ RL   K+RP   PL   + 
Sbjct: 205 ALQQAAALLCAGEIVAIK-----GIGGFHLACDATDQHAVMRLRNRKRRP-GKPLAVMLP 258

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+S + +      L+     L  P    +++     + +      +L      +P     
Sbjct: 259 DVSWLARCTGNHSLAQLSETLLSPAAPIVLVPQRPHSALCDAVAPHLDEVGVMLPSNPLH 318

Query: 126 KLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
            L+ +    PL + S N +G+      +  L  
Sbjct: 319 HLLMQAVRRPLVMTSGNATGRAPALTNEQALQD 351


>gi|283786741|ref|YP_003366606.1| hydrogenase maturation protein [Citrobacter rodentium ICC168]
 gi|282950195|emb|CBG89831.1| hydrogenase maturation protein [Citrobacter rodentium ICC168]
          Length = 747

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 20/155 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL  A E L AG  +A     V G+       D+RNP A+  L   K+RPA  PL   
Sbjct: 200 EAALTAAAEVLKAGGIVA-----VKGIGGFHLACDARNPDAVATLRARKRRPA-KPLAVM 253

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + D   +         +  L     P    +++D      +       L      +P   
Sbjct: 254 LPDDGGL------PTAARELLNA--PAAPIVLIDKRYVASLCAEIAPGLSEVGVMLPANP 305

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
            + L+ +    PL + S N SG+    +    +  
Sbjct: 306 LQHLLMQALNCPLVMTSGNLSGRPPAMSNAQAMED 340


>gi|18977588|ref|NP_578945.1| hypothetical protein PF1216 [Pyrococcus furiosus DSM 3638]
 gi|18893305|gb|AAL81340.1| hypothetical protein PF1216 [Pyrococcus furiosus DSM 3638]
          Length = 49

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 31/46 (67%)

Query: 26 AIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
          A PTET+YGL  D+ N  A++R++E K RP  N LI +++  S ++
Sbjct: 2  AFPTETIYGLGDDALNGEAVKRIFEAKGRPTDNLLIVYMAKFSQLR 47


>gi|149174236|ref|ZP_01852863.1| hydrogenase maturation protein [Planctomyces maris DSM 8797]
 gi|148846781|gb|EDL61117.1| hydrogenase maturation protein [Planctomyces maris DSM 8797]
          Length = 765

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 14/152 (9%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61
           +D+ A++ A   L  G  + +      GL       D+ +  A++ L E K+R    PL 
Sbjct: 210 SDTEAIQSAARALQQGAIVGLK-----GLGGYQLLVDATSEAAVQMLREKKQR-LGKPLA 263

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             V+D+   +K A ++           P    ++L     + I       L T    +P 
Sbjct: 264 VMVTDLIAARKLAMMNDAEAETLAS--PAAPIVLLQAHENSPIAGNVNPGLNTVGVMLPT 321

Query: 122 GFTKK-LIETYGHPLAIPSANRSGQISITNVK 152
                 L++    PL + SANR G+      +
Sbjct: 322 TPLHWLLLQQCDFPLVVTSANREGEPLFYQDR 353


>gi|289677573|ref|ZP_06498463.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae
          FF5]
          Length = 55

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 6  ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
          +  S  +++A + + AG  IA PTE V+GL  D  +  A+ RL  IK RP    L
Sbjct: 1  MVSSWRVQQAAQDIRAGAVIAYPTEAVWGLGCDPWDEEAVYRLLAIKSRPVEKGL 55


>gi|270308596|ref|YP_003330654.1| hydrogenase maturation protein HypF [Dehalococcoides sp. VS]
 gi|270154488|gb|ACZ62326.1| hydrogenase maturation protein HypF [Dehalococcoides sp. VS]
          Length = 763

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 15/165 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ + +A + L  G  +AI      GL       D+ NP A+  L   K RP+  P    
Sbjct: 205 ADTIAEAAKLLKDGRILAIR-----GLGGFLLAADATNPPAVNTLRRRKHRPS-KPFAVM 258

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           + DI+  +KH  +      L     P    ++      + + P +          +    
Sbjct: 259 LPDIAEARKHCFISAEEEKLL--ISPAAPIVLCKWNGESPVCPETAPKQNYLGIMLAYTP 316

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L++  G PL + S N S +    +    L   +       +
Sbjct: 317 IHHLLLKETGKPLIMTSGNLSEEPIAKDNDEALK-RLGNIADYFL 360


>gi|237752501|ref|ZP_04582981.1| hydrogenase maturation protein HypF [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375990|gb|EEO26081.1| hydrogenase maturation protein HypF [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 778

 Score = 77.8 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 14/172 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPA 56
           + +     N L KA EFL  G  +A     V     Y L  +  N  AI  L   K RP 
Sbjct: 213 KFIKEFTQNPLDKAVEFLKQGKILA-----VKGIGGYALVCNGLNTEAIMVLRMRKNRPR 267

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P      D+ M + +  +      +       P+ L      +   H +   NL+T  
Sbjct: 268 -KPFALMCKDLKMAESYVHLSAFQKEILDSNI-APILLCDFKDKSPLPHSVIAPNLETLG 325

Query: 117 FRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             +P      L+ E    PL   SAN SG+  I +   I+  ++      ++
Sbjct: 326 VILPYAPLHYLLFEAIDFPLIFTSANLSGEPIIKDFSGIV-ENLGDVCDGVL 376


>gi|289806392|ref|ZP_06537021.1| putative ribosome maturation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 121

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 72  KHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKL 127
            +     L+    K     WPGP+T V    +TT      T    +   RV        L
Sbjct: 1   PYIDDSILTAAQRKAVFDCWPGPVTFVFPAPATT--PRWLTGRFDSLAVRVTNHPLVVAL 58

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
              YG PL   SAN SG      V+ +  +    + P +++G        S I +    +
Sbjct: 59  CNAYGKPLVSTSANLSGLPPCRTVEEV-RAQFGDDFP-VVEGATGGRLNPSEIRDALTGE 116

Query: 188 KVR 190
             R
Sbjct: 117 LFR 119


>gi|71894113|ref|YP_278221.1| hypothetical protein MS53_0089 [Mycoplasma synoviae 53]
 gi|71850901|gb|AAZ43510.1| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 157

 Score = 77.4 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV GL V   N  ++ +LY +K RP    ++      + + K          +A    
Sbjct: 13  TDTVCGLGVKLENKDSLHKLYALKNRPVDKKIMILAGSFNDIFKLTKFTKKQRVMAYKLL 72

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PG  +++++                    R+P     +       P+ + SAN SG+   
Sbjct: 73  PGSNSIIVNN----------------IGMRIPNCLKLRKFLIKNGPMYVTSANISGE-KP 115

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            +++        ++I  I+D   S  G  S I N+   +
Sbjct: 116 LSIEEA--QVKFEKIRYIVDY-CSPSGSPSKIYNLDTGE 151


>gi|238790260|ref|ZP_04634034.1| Carbamoyltransferase hypF [Yersinia frederiksenii ATCC 33641]
 gi|238721610|gb|EEQ13276.1| Carbamoyltransferase hypF [Yersinia frederiksenii ATCC 33641]
          Length = 760

 Score = 77.4 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 12/156 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A+++A   L AG  +A     V G     LAVD+ N TA+ RL   K RP+  PL  
Sbjct: 200 DFAAVQQAAMALLAGEIVA-----VKGVGGFHLAVDATNSTAVARLRARKHRPS-KPLAV 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + D S +K           L  L  P    +++     + +       L      +P  
Sbjct: 254 MLPDASWLKTCVQSTDNDALLRLLRSPAAPIVLVAKQPNSPLSAAVAPKLPEIGVMLPAN 313

Query: 123 FTKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157
             +  L++    PL + S N SG+    + +  LS+
Sbjct: 314 PLQHLLLQQVARPLVMTSGNGSGKPPALSNEQALSA 349


>gi|312897390|ref|ZP_07756814.1| [NiFe] hydrogenase maturation protein HypF [Megasphaera
           micronuciformis F0359]
 gi|310621451|gb|EFQ04987.1| [NiFe] hydrogenase maturation protein HypF [Megasphaera
           micronuciformis F0359]
          Length = 770

 Score = 77.4 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 21/198 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+R A E +  G  IA     V G+       D  N   + RL  +K RP   P     +
Sbjct: 198 AIRAAREAIRQGKIIA-----VKGIGGFHLCCDGTNEAVVSRLRRLKPRPV-KPFAVMAA 251

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+   K+   V   +  L    +  P+ L+   +       ++  N       +P    +
Sbjct: 252 DLETAKRECVVTRAAEELLTS-YERPIVLMKRRIGGKAAASVAPDN-PYMGVMLPYAPLQ 309

Query: 126 KLI----ETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLES 178
            L+    +    P  L + SANRSG       + +  + +     LI+       + ++ 
Sbjct: 310 LLLFSYNDGLHMPDLLVMTSANRSGMPICRTDEEV-RTDLPGLCDLILSHDRDILLRVDD 368

Query: 179 TIVNVQCEKKVRILRPGG 196
           ++V V  ++   I R  G
Sbjct: 369 SVVTVSADEPYMIRRSRG 386


>gi|238921140|ref|YP_002934655.1| [NiFe] hydrogenase maturation protein HypF, [Edwardsiella ictaluri
           93-146]
 gi|238870709|gb|ACR70420.1| [NiFe] hydrogenase maturation protein HypF, putative [Edwardsiella
           ictaluri 93-146]
          Length = 774

 Score = 77.0 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 14  KAC-EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           +A    LDAG  +A     V GL       D+ N  AI RL E K+RP   PL   + D+
Sbjct: 204 QAVTRSLDAGHIVA-----VKGLGGFHLACDAENDAAIARLRERKRRP-GKPLALMLPDL 257

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKK 126
           S + ++    P +    +     P   ++ + ++  +       L      +P       
Sbjct: 258 SWLARYCRAAPDAG--LQALLSSPAAPIVLVPASDAVPAQVAPGLDEVGVMLPGTPLHHL 315

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSS 157
           L+   G PL + S N SGQ    +    L+ 
Sbjct: 316 LMAHIGRPLVMTSGNASGQPPALDNAQALAD 346


>gi|271965276|ref|YP_003339472.1| (NiFe) hydrogenase maturation protein HypF [Streptosporangium
           roseum DSM 43021]
 gi|270508451|gb|ACZ86729.1| (NiFe) hydrogenase maturation protein HypF [Streptosporangium
           roseum DSM 43021]
          Length = 775

 Score = 77.0 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 14/200 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A E + +G  +A     V     Y LA D+ +  A+R L   K R    P    V
Sbjct: 220 DPIGLAAEVVRSGGVLA-----VKGLGGYHLAADATDEAAVRALRSRKHR-EDRPFAVMV 273

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +D+   +    +D ++  L     P    ++L       +        +     +P    
Sbjct: 274 ADLDAARTLCELDQVAERLLTG--PRRPIVLLPRRPGAPLAEAVAPGDRRLGVMLPYTPM 331

Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
             L+      P  + S N S +      +   +         +       +  + ++V  
Sbjct: 332 HHLLAGEIARPYVLTSGNLSDEPIAYRDRDAFTRLAGIADRFLTHDRPIHVRTDDSVVLA 391

Query: 184 QCEKKVRILRPGGLEIETLK 203
              +++ + R  G   E L+
Sbjct: 392 AGGRELPLRRSRGYAPEPLR 411


>gi|291547016|emb|CBL20124.1| [NiFe] hydrogenase maturation protein HypF [Ruminococcus sp. SR1/5]
          Length = 806

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 22/200 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+    + + +G  +AI      G+       D+ +  A++RL + K+RP   P     
Sbjct: 216 EAITYTRKIIASGGIVAIK-----GIGGFHLCCDATSEEAVQRLRQRKRRPV-KPFAVMA 269

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+  VKK   V      +       P+ L+  L   T +              +P    
Sbjct: 270 QDMEAVKKICKVSEEQEKILTGH-QKPILLLDKLPGETGLCESIAPGNPKVGVMLPYAPV 328

Query: 125 KKL-------IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGL 176
           + L       I   G  L + S N SG     + +  +   +      I+      +I  
Sbjct: 329 QLLLFHYDDGIRMPGL-LVMTSGNTSGAPICRDDEEAV-EELSHLCDCILSHNRKIRIRA 386

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           + ++++    +   I R  G
Sbjct: 387 DDSVMDFYKGEPYMIRRSRG 406


>gi|152979285|ref|YP_001344914.1| (NiFe) hydrogenase maturation protein HypF [Actinobacillus
           succinogenes 130Z]
 gi|150841008|gb|ABR74979.1| (NiFe) hydrogenase maturation protein HypF [Actinobacillus
           succinogenes 130Z]
          Length = 766

 Score = 76.6 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 18/173 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPA 56
           + +    + AL++  + L  G  +A     V G     LA D+ N +A++ L E K RP 
Sbjct: 206 ETILAERNTALQQTADALKQGKIVA-----VKGVGGFHLACDATNQSAVKLLRERKHRP- 259

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             PL   V  ++ ++           L     P    ++L      ++ PL    L    
Sbjct: 260 GKPLAIMVPGLANLRDL--NTEEIRLLTSAAAP---IVLLKNRKVPEVCPLIAPKLNEIG 314

Query: 117 FRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
             +P    +  L+     PL + SAN SG+  + + +  +   +     + + 
Sbjct: 315 VMLPGNPLQHLLLREVNRPLVMTSANPSGEPPVLDNQSAVK-FLKDLADVFLC 366


>gi|217966526|ref|YP_002352032.1| (NiFe) hydrogenase maturation protein HypF [Dictyoglomus turgidum
           DSM 6724]
 gi|217335625|gb|ACK41418.1| (NiFe) hydrogenase maturation protein HypF [Dictyoglomus turgidum
           DSM 6724]
          Length = 741

 Score = 76.6 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 17/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D +   K  ++L+ G  +AI      G     LA D+     ++RL E KKRP+  P   
Sbjct: 192 DKDIFEKIAKYLEEGKILAIK-----GMGGFHLACDATKEDIVKRLRERKKRPS-KPFAL 245

Query: 63  HVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            + DI M+K++  V      + K    P    ++L      DI PL     K     +P 
Sbjct: 246 MMKDIEMIKEYCFVSKEEEKILKSKEAP---IVLLRTRELKDISPLVAPGNKYLGVMLPY 302

Query: 122 GFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                LI + +  P+ + S N S +    + +  +   +     + +
Sbjct: 303 TPYHHLIFDYFKKPIIMTSGNLSDEPIAKDNEEAM-ERLKNIADVFV 348


>gi|295109109|emb|CBL23062.1| [NiFe] hydrogenase maturation protein HypF [Ruminococcus obeum
           A2-162]
          Length = 782

 Score = 76.3 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 20/199 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+  A + +  G  +AI      G+       D+ N TA+ RL ++K+RP M P     
Sbjct: 212 DAITFARKTIADGGIVAIK-----GIGGFHLCCDASNETAVIRLRQLKRRP-MKPFAVMA 265

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+ +VKK   V      +       P+ L+    +   + P            +P    
Sbjct: 266 KDMEIVKKECEVSEEQGKILDGH-QKPIMLLDKKKNAQILCPSVAPGNPKVGVMLPYAPV 324

Query: 125 KKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177
           + LI TY      P  L + S N SG     +  H   + +      ++      +I  +
Sbjct: 325 QLLIFTYDDGIEMPEFLVMTSGNTSGAPICRDD-HEAETELSGFCDCMLSHDRKIRIRAD 383

Query: 178 STIVNVQCEKKVRILRPGG 196
            ++++   +K   I R  G
Sbjct: 384 DSVMDFYEDKPYMIRRSRG 402


>gi|260460213|ref|ZP_05808465.1| (NiFe) hydrogenase maturation protein HypF [Mesorhizobium
           opportunistum WSM2075]
 gi|259033858|gb|EEW35117.1| (NiFe) hydrogenase maturation protein HypF [Mesorhizobium
           opportunistum WSM2075]
          Length = 807

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 6/147 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A   +  G  +AI     Y LA D+  P A+  L + K+R A  P      D+ +
Sbjct: 215 DDVDAALSLIQKGEIVAIKALGGYQLACDATRPEAVALLRQRKRRDA-KPFALMARDVDV 273

Query: 70  VKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V++HA+V D  +  LA    P    ++L       +       L+T  F +P       L
Sbjct: 274 VRRHATVSDAEAAALASREAP---IVLLAATGPEKLPAEIAPGLQTLGFMLPSTPLHLLL 330

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154
           +   G P+ + S N S +  + +    
Sbjct: 331 LRRMGRPVVMTSGNLSDEPQLIDDAEA 357


>gi|255658198|ref|ZP_05403607.1| [NiFe] hydrogenase maturation protein HypF [Mitsuokella multacida
           DSM 20544]
 gi|260849506|gb|EEX69513.1| [NiFe] hydrogenase maturation protein HypF [Mitsuokella multacida
           DSM 20544]
          Length = 782

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 24/203 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++A+R     L +G   AI      G+       D+ +  A+ RL  +K RP   P    
Sbjct: 198 ADAIRAVRRVLASGGIAAIK-----GIGGFHLACDATDEAAVHRLRTLKHRPQ-KPFAVM 251

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + D    ++   ++P    +       P+ L+L     + + P            +P   
Sbjct: 252 MRDEETARRACHLEPGEAEMMTGH-QKPI-LLLRRREDSPLAPSVAPGNPKVGVMLPYAP 309

Query: 124 TKKLI-------ETYGHPLAI--PSANRSGQISITNVKHILSSSICKEIPLII-DGGISK 173
            + LI       ET   P  +   S N SG     N +     ++     +I+      +
Sbjct: 310 VQMLIFDYPEDHETPEVPAMLVMTSGNPSGAPICHNDEEA-EETLAPLCDVILSHDRRIR 368

Query: 174 IGLESTIVNVQCEKKVRILRPGG 196
           +  + ++++    +   + R  G
Sbjct: 369 LRADDSVMDWFAGRPYMVRRSRG 391


>gi|213964976|ref|ZP_03393175.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium
           amycolatum SK46]
 gi|213952512|gb|EEB63895.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium
           amycolatum SK46]
          Length = 802

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 51/160 (31%), Gaps = 16/160 (10%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           R+A   LD G  +A     V G+       D+ N  A  +L   K+RP   PL      +
Sbjct: 223 RRAHALLDDGALLA-----VKGIGGFHLVCDATNDAACEKLRLRKRRP-DKPLAVMAPTV 276

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
               +   +            P    ++     +  +  L    L +    +P      L
Sbjct: 277 DTAAQLVELTEQEKRFLDS--PEAPIVIAPKQRSGPLSNLIAPGLDSFGIMLPYSGIHLL 334

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           +     PL + S N SG+   T+    L   +       I
Sbjct: 335 L--CDRPLVVTSGNLSGEPVCTDNADALK-KLGHIADAFI 371


>gi|50365446|ref|YP_053871.1| putative translation factor [Mesoplasma florum L1]
 gi|50364002|gb|AAT75987.1| putative translation factor [Mesoplasma florum L1]
          Length = 168

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 21/177 (11%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAV--DSRNPTAIRRLYEIKKRPAMNPLICH 63
           +   + + KA   L     I +PT+T+YGL+   +  N    +R+  IK      PLI  
Sbjct: 1   MLSKDLIIKATNALIENEIIILPTDTIYGLSAIWNFENE---KRINNIKNANEEKPLIVL 57

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +S+I  +          + L         T++    S          N KT   R+    
Sbjct: 58  ISNIEQLSILGIEKNEFVDLLFN---ESTTVIFKTKS----------NNKTIAVRLIIRD 104

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
             K I     P+   S N  G+  I     +++    + I +  D  I+ I   S I
Sbjct: 105 DIKKIIEKTGPIFSTSVNLHGEQPINEKDELIN--FDRSINVYFDKVITNI-KPSKI 158


>gi|57233776|ref|YP_182140.1| [NiFe] hydrogenase maturation protein HypF [Dehalococcoides
           ethenogenes 195]
 gi|57224224|gb|AAW39281.1| [NiFe] hydrogenase maturation protein HypF [Dehalococcoides
           ethenogenes 195]
          Length = 763

 Score = 76.3 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 15/165 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++A+ +A + L  G  +AI      GL       D+ N  A+  L   K RP+  P    
Sbjct: 205 ADAIAEAAKLLKDGRILAIR-----GLGGFLLAADATNQLAVNTLRRRKHRPS-KPFAVM 258

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           + DI+  +KH  +      L     P    ++      + I P +          +    
Sbjct: 259 LPDIAEARKHCFISAEEEKLL--ISPAAPIVLCKWNRESPICPETAPKQNYLGIMLAYTP 316

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L++  G PL + S N S +    +    L   +       +
Sbjct: 317 LHHLLLKETGKPLIMTSGNLSAEPIAKDNDEALK-RLGNIADYFL 360


>gi|327399233|ref|YP_004340102.1| SUA5/yciO/yrdC domain-containing protein [Hippea maritima DSM
           10411]
 gi|327181862|gb|AEA34043.1| SUA5/yciO/yrdC domain protein [Hippea maritima DSM 10411]
          Length = 192

 Score = 76.3 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 16/202 (7%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           M I +      A   L AG  I  P  T+YG +    +  A +R++ +K+R    P I  
Sbjct: 1   MIIINEKNPNPAIALLKAGGVIICPAFTIYGFSAFLFSKAANKRIFLLKRRSINKPFIVI 60

Query: 64  VSD--ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
                I  V   A  D L+  L   F        + + +   +   ++ + KT       
Sbjct: 61  AHKDFILDVAFEADKDKLAFLLDNGFS-------VLIKTKIKLPHWASFSSKTVFRLANT 113

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
            F KK+      P+   S N S    I +   I+       +  I+ G +  +G  STIV
Sbjct: 114 EFLKKVC--SVGPITSTSVNISNSGEINSPLQIVK-LYKNRVNGIVLGKVKGVG--STIV 168

Query: 182 NVQCEKKVRILRPGGLEIETLK 203
            +     + +LR G   IE L+
Sbjct: 169 EL-NRGVITVLRRG-FNIEKLE 188


>gi|308050856|ref|YP_003914422.1| (NiFe) hydrogenase maturation protein HypF [Ferrimonas balearica
           DSM 9799]
 gi|307633046|gb|ADN77348.1| (NiFe) hydrogenase maturation protein HypF [Ferrimonas balearica
           DSM 9799]
          Length = 771

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 4/150 (2%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
             AL +A + L AG  +AI     Y LAVD+ N  A+  L + K RP+  P    V+D++
Sbjct: 202 EQALTEAVDALRAGQIVAIKALGGYHLAVDASNDQAVSTLRQRKHRPS-KPFALMVADLA 260

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
           M      ++      A L  P    ++L   +   +       +      +     + L+
Sbjct: 261 MAHTLVQLNDAEA--AALTSPAAPIVLLRPRTDAPLAASVAPGMAQLGVMLASNPLQHLL 318

Query: 129 -ETYGHPLAIPSANRSGQISITNVKHILSS 157
            +  G  L + S N SG+    +  H L+ 
Sbjct: 319 MKRMGRALVMTSGNASGRPPCIDDGHALAE 348


>gi|260597698|ref|YP_003210269.1| carbamoyltransferase hypF [Cronobacter turicensis z3032]
 gi|260216875|emb|CBA30419.1| Carbamoyltransferase hypF [Cronobacter turicensis z3032]
          Length = 764

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 21/165 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL  A + L+ GL +AI      G+       D++NP A+ RL   K RPA  PL   
Sbjct: 213 EAALEAAIDALNEGLIVAIK-----GIGGFHLACDAQNPDAVARLRARKHRPA-KPLAVM 266

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           ++D + +   A         A+L  P    +++D      +       L      +P   
Sbjct: 267 LTDAAGLPDDAR--------AQLTTPAAPIVLVDNAHLPPLCEAIAPGLNETGVMLPANP 318

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            + L+ +  G PL + S NRSG+         LS  + +     +
Sbjct: 319 LQHLLMQGVGRPLVMTSGNRSGEPPALTNAQALS-QLGEIADGFL 362


>gi|15606085|ref|NP_213462.1| transcriptional regulatory protein HypF [Aquifex aeolicus VF5]
 gi|2983269|gb|AAC06863.1| transcriptional regulatory protein HypF [Aquifex aeolicus VF5]
          Length = 746

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 20/195 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            AL    E +  G  +A     V G+       ++ N  ++R L + K+R +  P     
Sbjct: 202 EALELLIEEIKIGKIVA-----VKGVGGFHLICNATNEESVRTLRKRKRR-SEKPFAVMF 255

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
             +  V+ +A+       L K     P   ++ +    ++ P  +  LK     +P    
Sbjct: 256 KSLEQVEAYAN----PTELEKALLISPERPIVLIQKKKELAPSVSPGLKRVGAFLPYSPL 311

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIV 181
              ++ +   P+   SAN S +  I + K  L   + +   LI+     I +   +S +V
Sbjct: 312 HHLILNSLDFPVVATSANISEEPIIKDNKEAL-EKLGELADLILVHNRDIKRRCDDS-VV 369

Query: 182 NVQCEKKVRILRPGG 196
            V       I R  G
Sbjct: 370 KVVSGVPTPIRRSRG 384


>gi|32476636|ref|NP_869630.1| low molecular weight protein-tyrosine-phosphatase ywlE
           [Rhodopirellula baltica SH 1]
 gi|32447182|emb|CAD77008.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Rhodopirellula baltica SH 1]
          Length = 461

 Score = 75.9 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 89/258 (34%), Gaps = 47/258 (18%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE--IKKRPAMN--------- 58
           + + ++ + L  G  I +P+ETVYGL   S  P A+RRL +     R             
Sbjct: 51  DIVHRSVQALVEGQVIGVPSETVYGLVASSLCPAAVRRLAQWTATCRGWSTESDASTAGQ 110

Query: 59  -----------PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTD--- 103
                       +   V     V      +  L   L++  +PGPLTL+ D   T     
Sbjct: 111 AGFVAPPADAGSIALCVRSTEAVGDFLMPMTILGRRLSERCFPGPLTLIADCDDTVSAMS 170

Query: 104 -IHPLSTANLKT------------ACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISIT 149
            +       L+               FRV        I      PL             T
Sbjct: 171 CLPESVAGTLRAGAGQRPSPAGGPVAFRVSGHRLLSHIHRYLSAPLVWGEIGLPDASPPT 230

Query: 150 NVK---HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
             +     L++   + +PL++D GIS+ G E T+V V       + R G ++   + + +
Sbjct: 231 TAEKLQSALNAGTGESLPLLLDDGISRYGDEGTVVRVTGNH-WHVQRTGVIQQAAMNQFV 289

Query: 207 SVELE-YCVDETSTPQSP 223
              +   C   T   +SP
Sbjct: 290 KPVIALVCTGNTC--RSP 305


>gi|313665083|ref|YP_004046954.1| hypothetical protein MSB_A0197 [Mycoplasma leachii PG50]
 gi|312949768|gb|ADR24364.1| conserved hypothetical protein [Mycoplasma leachii PG50]
          Length = 166

 Score = 75.9 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA + L     + +PT+T+YGL+        I ++ E+KK     PLI  +S ++ + 
Sbjct: 7   INKAIKLLKNNQIVILPTDTIYGLSAIYSLENQI-KINEVKKADINKPLIVLISSLNQLN 65

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130
               +D             P T++    ++            +   R V     K++I  
Sbjct: 66  DLDILDLTDKDFLLNT--DPTTVIFKTTTS------------SIAIRLVKRDDMKQIINN 111

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
            G P+   S N  G   +TN K +++    + I +  D
Sbjct: 112 TG-PIISTSVNIHGFDPLTNKKDLIN--FNQNIEVFFD 146


>gi|296272904|ref|YP_003655535.1| (NiFe) hydrogenase maturation protein HypF [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097078|gb|ADG93028.1| (NiFe) hydrogenase maturation protein HypF [Arcobacter nitrofigilis
           DSM 7299]
          Length = 742

 Score = 75.9 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 15/170 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            ++ +  L+K  + +++G  +AI      G+       D+ N  A+++L E K RP   P
Sbjct: 196 ELSSNETLKKIAQKINSGFIVAIK-----GIGGFHIICDATNENAVKKLREKKNRP-TKP 249

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                  I  +K   ++      +  L    P+ +++D  S   I      N+      +
Sbjct: 250 FAVMFKYIDEIKSCTNISKKEEEII-LCKEKPI-VIVDKNSMGKISEQIAPNINRLGVFL 307

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           P       L E   +P+   SAN   +  I +V+ I +  +   +  ++D
Sbjct: 308 PYSPLHILLFEYLNNPIIATSANLKDEPIIKSVEEIFN-KLGNVVDYVLD 356


>gi|72537501|gb|AAZ73678.1| HypF [Lyngbya majuscula CCAP 1446/4]
          Length = 788

 Score = 75.9 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 15/165 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      GL       D+ N   +++L   K+RP   PL    
Sbjct: 211 DEVDAVCTLLQRGQIVAIK-----GLGGFHLACDATNEEIVQKLRLRKRRP-DKPLALMA 264

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVP-CG 122
            DI++++K+  V P    L +     P+ L+    S    I      +     F +P   
Sbjct: 265 RDINIIEKYCFVTPEERELLESSA-APIVLLRRKKSLKDGIAASVAPHQNYLGFMLPYTP 323

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                +     P+ + SAN S      +   +  S +       I
Sbjct: 324 LHHLALRRLEIPIVLTSANFSDDPQCIDNAEV-RSKLSNVADYFI 367


>gi|284038739|ref|YP_003388669.1| (NiFe) hydrogenase maturation protein HypF [Spirosoma linguale DSM
           74]
 gi|283818032|gb|ADB39870.1| (NiFe) hydrogenase maturation protein HypF [Spirosoma linguale DSM
           74]
          Length = 778

 Score = 75.9 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 18/175 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56
           Q ++   SN ++++ + L +G  IA     V G+       D+ N  AI +L E K RP 
Sbjct: 193 QCITRDQSNIIQQSIDVLASGRTIA-----VKGIGGFLLLCDATNADAIHQLRERKHRP- 246

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTANLK 113
             PL     +I  +++   +      L     P    + LD         +       L 
Sbjct: 247 TKPLAVLYPNIDQLQQDCFLADDERALLTS--PASPIVALDKRPELPSGLVADQIAPGLN 304

Query: 114 TACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                +P      L+ + +G PL   S NRSG       +  L   +     LI+
Sbjct: 305 QLGVMLPYTPLLALLADAFGKPLVATSGNRSGSPICYTNEQAL-DQLSAVADLIV 358


>gi|298345911|ref|YP_003718598.1| hydrogenase maturation protein [Mobiluncus curtisii ATCC 43063]
 gi|298235972|gb|ADI67104.1| hydrogenase maturation protein [Mobiluncus curtisii ATCC 43063]
          Length = 774

 Score = 75.9 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + AL +A + L AG  +A     V G+       D+RN  A+ RL + K R    P    
Sbjct: 218 AAALDEARQRLRAGQILA-----VKGIGGFHLMCDARNEAAVARLRKRKDRG-DKPFAVM 271

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           V+D     + A +D   L   +     P+ ++       D+ P     L      +P   
Sbjct: 272 VADAVTAARLARLDADQLRTLQTAA-RPI-VIAPFGQEYDLAPAVAPGLGDVGILLPYAP 329

Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              +L+  E     L   S N +G+      +   +  +   +   +
Sbjct: 330 LHLELLSGECAQMALVATSGNLAGEPLCFTNQDA-AERLAGIVDAFV 375


>gi|296132814|ref|YP_003640061.1| (NiFe) hydrogenase maturation protein HypF [Thermincola sp. JR]
 gi|296031392|gb|ADG82160.1| (NiFe) hydrogenase maturation protein HypF [Thermincola potens JR]
          Length = 763

 Score = 75.9 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 16/172 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56
           +++ + D   +R+  E L  G  IAI      GL       D++N  A+R L   K R  
Sbjct: 195 EVLPVDDP--IRETAELLRRGHIIAIK-----GLGGYHLACDAKNEQAVRELRSRKYR-E 246

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P      D+     +  +      L K     P+ L+     + D+            
Sbjct: 247 DKPFAVMFKDVDSALSYCHISVSEERLLKSI-KRPIVLLKKKKESYDLAYQVAPENDFLG 305

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             +P       L + +  PL + SAN S +      +  L   + +     +
Sbjct: 306 VLLPYTPLHYILFKYFTGPLVMTSANVSDEPIAYKDRDAL-ERLAEIADYFL 356


>gi|258614608|ref|ZP_05712378.1| Sua5/YciO/YrdC/YwlC family protein [Enterococcus faecium DO]
          Length = 76

 Score = 75.9 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 265 ISLNLSKTGKLKEAAFNLFNYMKIADD--SGASSIAFSSIPNHGLGIAINNRLERAAA 320
            ++ +     ++ AA  LF  ++  D+   G   I     P  GLG A  NRL++AA 
Sbjct: 13  AAVYMYNDNSVEAAAKGLFAGLRGLDEPTLGLDLIFVQVYPETGLGNAYMNRLKKAAG 70


>gi|327540244|gb|EGF26833.1| Protein-tyrosine phosphatase, low molecular weight [Rhodopirellula
           baltica WH47]
          Length = 432

 Score = 75.9 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 89/258 (34%), Gaps = 47/258 (18%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE--IKKRPAMN--------- 58
           + + ++ + L  G  I +P+ETVYGL   S  P A+RRL +     R             
Sbjct: 22  DIVHRSVQALVEGQVIGVPSETVYGLVASSLCPAAVRRLAQWTATCRGWSTESDASTAGQ 81

Query: 59  -----------PLICHVSDISMVKKHA-SVDPLSLHLAKLFWPGPLTLVLDLLSTTD--- 103
                       +   V     V      +  L   L++  +PGPLTL+ D   +     
Sbjct: 82  AGFVAPPADAGSIALCVRSTEAVGDFLMPMTILGRRLSERCFPGPLTLIADCDDSVSAMS 141

Query: 104 -IHPLSTANLKT------------ACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISIT 149
            +       L+               FRV        I      PL             T
Sbjct: 142 CLPESVAGTLRAGAGQRPSPAGGPVAFRVSGHRLLSHIHRYLSAPLVWGEIGLPDASPPT 201

Query: 150 NVK---HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAI 206
             +     L++   + +PL++D GIS+ G E T+V V       + R G ++   + + +
Sbjct: 202 TAEKLQSALNAGTGESLPLLLDDGISRYGDEGTVVRVTGNH-WHVQRTGVIQQAAMNQFV 260

Query: 207 SVELE-YCVDETSTPQSP 223
              +   C   T   +SP
Sbjct: 261 KPVIALVCTGNTC--RSP 276


>gi|221103449|ref|XP_002169716.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 143

 Score = 75.9 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAI 137
           +S ++ +   PGP+TLV     ++ ++        +   R+P C F + L +    P+A+
Sbjct: 6   ISDNVLEDLLPGPVTLVFQR--SSLLNSYLNPTSNSIGVRIPKCAFIQTLAQKCQQPIAL 63

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGI----SKIGLESTIVNVQCEKKVRILR 193
            SAN S  +S  ++       +  ++ LI+DGG      +  L ST+V++  +++  I+R
Sbjct: 64  TSANISSAMSSLDINE--FEELWPKLDLIVDGGTLGSSEQSRLGSTVVDLTKKREFTIIR 121

Query: 194 PGGLEIETLK 203
            G    E + 
Sbjct: 122 EGCAYNEVVN 131


>gi|89093087|ref|ZP_01166038.1| Hydrogenase maturation protein HypF [Oceanospirillum sp. MED92]
 gi|89082737|gb|EAR61958.1| Hydrogenase maturation protein HypF [Oceanospirillum sp. MED92]
          Length = 782

 Score = 75.5 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 34/183 (18%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           TD + +  A   +  G  +AI      G+       D++NP A++RL + K+RP   P  
Sbjct: 199 TDPDPIGAALALMQQGKIVAIK-----GIGGFHLVCDAQNPEAVQRLRDRKQRPE-KPFA 252

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
              +++  ++  A +        K     P+ L   +     +  +    L      +P 
Sbjct: 253 VMGANLESLRSIAELSRAREERLKGH-DAPICLCPKVEDA--LPDVVAPGLNWLGIMLPH 309

Query: 122 GFTKKLI--ETYGHPLAI-------------PSANRSGQISITNVKHILSSSICKEIPLI 166
                L+       P                 SAN SG   IT  +  L     K++  I
Sbjct: 310 TPIHYLLFHRAAQQPTGTAWLKEQQTLTLVMTSANLSGNPLITQDEEAL-----KQLAHI 364

Query: 167 IDG 169
            DG
Sbjct: 365 ADG 367


>gi|254500948|ref|ZP_05113099.1| (NiFe) hydrogenase maturation protein HypF [Labrenzia alexandrii
           DFL-11]
 gi|222437019|gb|EEE43698.1| (NiFe) hydrogenase maturation protein HypF [Labrenzia alexandrii
           DFL-11]
          Length = 773

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 22/204 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
            I  ++ +R A   L AG  IA+      GL       D+ N  A+ RL E KKRP   P
Sbjct: 198 RIETADPIRWAASRLAAGEIIALK-----GLGGFHLAVDATNDAAVARLREKKKRP-HKP 251

Query: 60  LICHVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTA----NLKT 114
           L   V D+   +    V      L +    P    ++L L + +   P  +      L  
Sbjct: 252 LAVMVRDLEQARTICHVSDREAALMEDRAAP---IVLLRLRAKSAEKPALSGHLAPGLDQ 308

Query: 115 ACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
               +P       LI     PL + S NRS    +   +     ++ +     +      
Sbjct: 309 CGLMLPATPLHHLLIAAVPGPLVMTSGNRSEDPQVITNEDA-RRNLGQIADGFLMHDREI 367

Query: 174 IG-LESTIVNVQCEKKVRILRPGG 196
           +  L+ +++       V + R  G
Sbjct: 368 VNRLDDSVMRADRGGPVILRRARG 391


>gi|225848581|ref|YP_002728744.1| (NiFe) hydrogenase maturation protein HypF [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643946|gb|ACN98996.1| (NiFe) hydrogenase maturation protein HypF [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 747

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 19/164 (11%)

Query: 14  KACEFLDA----GLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A E L +    G  +A     V G+       D+ + TA+  L E KKR    P     
Sbjct: 203 EAIEILRSLILEGKIVA-----VKGIGGFHLVCDATDDTAVSTLRERKKR-FEKPFAVMF 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            D+  VK +         L       P+ L+      TD+       +      +P    
Sbjct: 257 KDLETVKVYGDPSNFDEILINSA-EKPIVLI-KKKENTDLSEKVAPGIDRIGVFLPYSPL 314

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L++  G PL + SAN S +  + + +      +      I+
Sbjct: 315 HHLLLKIVGKPLVMTSANLSDEPIVKDNEEAF-EKLSDFTDYIL 357


>gi|239616961|ref|YP_002940283.1| (NiFe) hydrogenase maturation protein HypF [Kosmotoga olearia TBF
           19.5.1]
 gi|239505792|gb|ACR79279.1| (NiFe) hydrogenase maturation protein HypF [Kosmotoga olearia TBF
           19.5.1]
          Length = 747

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 20/202 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+++A   + AG  +AI      G+          +P AI++L  +K RP   P    
Sbjct: 208 EEAVKQAIGIIRAGGTVAIK-----GIGGIHLVCKP-DPDAIKKLRNLKDRPR-KPFAIM 260

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             D+  VKK A V  +   L       P   ++ L    DI    +    T    +P   
Sbjct: 261 AKDLETVKKFAYVGEVEERLLLS----PARPIVLLRKRGDIFYDVSPGFHTIGVMLPYTG 316

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIV 181
              L+      L + S N SG++   +    L+  + K    ++  D  I     +S ++
Sbjct: 317 IHYLLLEDFFVLVMTSGNISGEMLCADNFEALT-KLSKLSDGLLLHDRKIVNRCDDS-VI 374

Query: 182 NVQCEKKVRILRPGGLEIETLK 203
            V   K V + +  G   E +K
Sbjct: 375 KVLAGKPVFVRKSRGFIPEVIK 396


>gi|298492330|ref|YP_003722507.1| (NiFe) hydrogenase maturation protein HypF ['Nostoc azollae' 0708]
 gi|298234248|gb|ADI65384.1| (NiFe) hydrogenase maturation protein HypF ['Nostoc azollae' 0708]
          Length = 781

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 15/164 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      GL       D+   TA+++L E K+R    P     
Sbjct: 205 DDVDAVCTLLQKGQIVAIK-----GLGGIHLACDATQETAVQKLRERKRR-YHKPFALMA 258

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            DI+++ ++  +  L   L     P    ++L+  S   +         T  F +     
Sbjct: 259 RDINIINEYCYISDLEEELLTS--PAAPIVLLERKSEKQVASSVAPGQYTLGFMLAYTPL 316

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              ++     P+ + S N   +             + K     +
Sbjct: 317 HHLILRRMNRPIVLTSGNIPDEPQCI-ANEDAKDKLGKIADYFL 359


>gi|117925134|ref|YP_865751.1| (NiFe) hydrogenase maturation protein HypF [Magnetococcus sp. MC-1]
 gi|117608890|gb|ABK44345.1| (NiFe) hydrogenase maturation protein HypF [Magnetococcus sp. MC-1]
          Length = 758

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 86/254 (33%), Gaps = 46/254 (18%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            I   +AL +A   L  GL +A     V G+       D+R+  A+  L + K+RP   P
Sbjct: 194 KIIGESALTQAVAGLQQGLIVA-----VKGVGGYHLLCDARHAPAVETLRQRKQRP-HKP 247

Query: 60  LICHVSDISM-----VKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
           L   +  +       V  +  +  P    L     P    +++ L       P     L 
Sbjct: 248 LAVMLPQLGADGLQGVAAYVKLSEPYGRALLDPSRP---IVLIPLKPDHGFAPGVAPGLD 304

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII----- 167
                +P       L++ +G PL   S N SG+  + + +      +       +     
Sbjct: 305 EVGIMLPYSPLHHLLLQEWGGPLVATSGNLSGEPVLLDAQAA-EQRLAGVADAFLHHNRP 363

Query: 168 -----DGGIS----------KIGLESTIVNVQCEKKVR--ILRPGGLEIE--TLKRAISV 208
                D G+           ++G  S  + +   + +    L  GG       L  A  V
Sbjct: 364 ILRPADDGVVRLIAGKVRRLRVGRGSAPLELTLPQPLLQPSLALGGQMKNCVALGWAARV 423

Query: 209 ELEYCVDETSTPQS 222
            L   + E ++P+S
Sbjct: 424 VLSAHIGEMASPRS 437


>gi|291548872|emb|CBL25134.1| [NiFe] hydrogenase maturation protein HypF [Ruminococcus torques
           L2-14]
          Length = 792

 Score = 75.5 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 19/207 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56
           + + +  S+A+ +A   +  G  +A     V G+       D+ N  A+  L + K+RPA
Sbjct: 197 RTIDMKGSDAITEARRVISEGGIVA-----VKGIGGFHLCCDASNEAAVELLRKRKRRPA 251

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P      ++ +V+    +      +        L LV   + T  +            
Sbjct: 252 -KPFAVMARNLEVVQSVCELSKEQEEILTGHQKPILLLVRKEIETKQLCSSVAPGNPKVG 310

Query: 117 FRVPCGFTKKLIETY----GHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DG 169
             +P    + L+  Y      P  L + S N SG     + +  L   + +    I+   
Sbjct: 311 VMLPYAPVQLLLFQYPDGIKMPDFLVMTSGNVSGAPICRSDEEAL-EELSEFCDCILSHD 369

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGG 196
              ++  + ++++    +   I R  G
Sbjct: 370 RKIRVRADDSVMDFYKNRPYMIRRSRG 396


>gi|254393345|ref|ZP_05008492.1| hydrogenase maturation protein HypF [Streptomyces clavuligerus ATCC
           27064]
 gi|197706979|gb|EDY52791.1| hydrogenase maturation protein HypF [Streptomyces clavuligerus ATCC
           27064]
          Length = 771

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 29/202 (14%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ +  A   L  G  +A     V  L       D R+P A   L   K+R +  P    
Sbjct: 207 ADPVATAAGLLRDGHILA-----VKALGGYQLMADPRSPAATAELRARKERSS-KPFALL 260

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D +   ++  +D     L +   PG   ++L     + + P       T    +P   
Sbjct: 261 VRDSATAAEYTVLDDRERRLLES--PGRPIVLLRARPDSSLAPGVAPGSATLGLMLPATP 318

Query: 124 TKKLIETYGHPL-AIPSANRSGQISITNVKHILS-------SSI--CKEIPLIIDGGISK 173
            + L+     P+    SAN   +      +  L        + +   +EI + +D  I++
Sbjct: 319 LQHLLLAAAGPVLIATSANAPDEPMARTEEEALRGLRGLADAFLVHDREIHMRVDDSIAR 378

Query: 174 IGLESTIVNVQCEKKVRILRPG 195
           + + ST+     E KV  +R  
Sbjct: 379 V-VHSTV-----EPKVTFVRRA 394


>gi|294811021|ref|ZP_06769664.1| Hydrogenase maturation protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326439637|ref|ZP_08214371.1| hydrogenase maturation protein HypF [Streptomyces clavuligerus ATCC
           27064]
 gi|294323620|gb|EFG05263.1| Hydrogenase maturation protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 769

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 29/202 (14%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ +  A   L  G  +A     V  L       D R+P A   L   K+R +  P    
Sbjct: 205 ADPVATAAGLLRDGHILA-----VKALGGYQLMADPRSPAATAELRARKERSS-KPFALL 258

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D +   ++  +D     L +   PG   ++L     + + P       T    +P   
Sbjct: 259 VRDSATAAEYTVLDDRERRLLES--PGRPIVLLRARPDSSLAPGVAPGSATLGLMLPATP 316

Query: 124 TKKLIETYGHPL-AIPSANRSGQISITNVKHILS-------SSI--CKEIPLIIDGGISK 173
            + L+     P+    SAN   +      +  L        + +   +EI + +D  I++
Sbjct: 317 LQHLLLAAAGPVLIATSANAPDEPMARTEEEALRGLRGLADAFLVHDREIHMRVDDSIAR 376

Query: 174 IGLESTIVNVQCEKKVRILRPG 195
           + + ST+     E KV  +R  
Sbjct: 377 V-VHSTV-----EPKVTFVRRA 392


>gi|255322290|ref|ZP_05363436.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter showae
           RM3277]
 gi|255300663|gb|EET79934.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter showae
           RM3277]
          Length = 741

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 19/204 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D+ + ++A   ++ G  +A     V GL              +  L E KKRP   P   
Sbjct: 199 DNESAKQAARLINEGKILA-----VKGLGGFHLMCR-LKEDTVGLLRERKKRP-KKPFAV 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
              D++  KK+A + P    L       P+ +VL  L +  +       L      +P  
Sbjct: 252 MCKDLARAKKYAQISPEEQQLLSSNL-KPI-VVLQSLPSARVPSNLAPGLNKIGIFLPYT 309

Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES--T 179
               L+ E     +   SAN SG+  I   K  L   +   I   +D    +I   S  +
Sbjct: 310 GVHLLLFEYLEGDVIATSANVSGEPIIYGEKD-LREKLGGAIDFYLDNDR-EIHSPSDDS 367

Query: 180 IVNVQCEKKVRILRPGGLEIETLK 203
           I  V   + + I    G+  + ++
Sbjct: 368 IAFVAGGETIFIRTSRGVHPKFIR 391


>gi|261344835|ref|ZP_05972479.1| [NiFe] hydrogenase maturation protein HypF [Providencia rustigianii
           DSM 4541]
 gi|282567284|gb|EFB72819.1| [NiFe] hydrogenase maturation protein HypF [Providencia rustigianii
           DSM 4541]
          Length = 759

 Score = 75.1 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 13/154 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            AL++  + L AG   AI      G     LA D+ N  A+ +L + K RP+  PL   +
Sbjct: 201 EALKQTAQRLLAGEIAAIK-----GVGGFHLACDATNSPAVNQLRQRKHRPS-KPLAVMI 254

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
             I+ + +        L         P+ L+  + + + + P    +L+     +P    
Sbjct: 255 PSINWLAEQGVEVTDGLRALLQSSAAPIVLI-PIWANSLLSPDIAPHLQEIGVMLPSNPL 313

Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+      PL + S N SG+  +   +  L+ 
Sbjct: 314 QHLLMSEVNTPLVMTSGNASGKPPVLTDQEALTD 347


>gi|292491450|ref|YP_003526889.1| (NiFe) hydrogenase maturation protein HypF [Nitrosococcus
           halophilus Nc4]
 gi|291580045|gb|ADE14502.1| (NiFe) hydrogenase maturation protein HypF [Nitrosococcus
           halophilus Nc4]
          Length = 781

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 16/195 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ +  A + L  G  +AI      GL       D     A+ RL   K+R    PL   
Sbjct: 203 ADPIAAAAQLLLKGAIMAIK-----GLGGFHLACDGTQFEAVARLRSNKRR-YEKPLALM 256

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
             D+ M++++  V   +  L +   P    ++L       +        +   F +P   
Sbjct: 257 ARDLEMIRRYCQVTEEAAQLLQS--PAAPIVLLPREGKGRVAENVAPEQQYLGFMLPYTP 314

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181
               L      PL + S N S +    +   +  S +       +      I  ++ ++V
Sbjct: 315 LHHLLCAELDQPLVMTSGNLSEEPPCLHNP-VARSKLAGIADYFLLHNRDIINRVDDSVV 373

Query: 182 NVQCEKKVRILRPGG 196
            +   +   + R  G
Sbjct: 374 RIMAGRPRWLRRARG 388


>gi|89255812|ref|YP_513174.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009603|ref|ZP_02274534.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367173|ref|ZP_04983204.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           holarctica 257]
 gi|89143643|emb|CAJ78841.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134252994|gb|EBA52088.1| sua5/yciO/yrdC family protein [Francisella tularensis subsp.
           holarctica 257]
          Length = 121

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 47/96 (48%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D
Sbjct: 12  NNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT 102
           +S + ++A VD  +  L K + PGP T +L+     
Sbjct: 72  LSEIFEYAKVDNNAYRLLKRYTPGPYTFILNATKKV 107


>gi|300088497|ref|YP_003759019.1| (NiFe) hydrogenase maturation protein HypF [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528230|gb|ADJ26698.1| (NiFe) hydrogenase maturation protein HypF [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 774

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           ++  +  L  A   L  G  +A     V GL       D+ +P A+  L + K+RPA  P
Sbjct: 201 TMPAAEPLATAAGLLKNGHILA-----VRGLGGFLLACDATDPVAVAELRQRKRRPA-KP 254

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               ++D++  +    V P    L K     P+ ++L L     + P     L+     +
Sbjct: 255 FAVMLADLAATEALCQVSPEEARLLKDTA-API-VLLRLKENGVLAPGVAPGLRHLGVML 312

Query: 120 PCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  L+    G PL + S N + +    +    L+  +       +
Sbjct: 313 AYTPLHHLLMADVGRPLVMTSGNLAEEPIARDNDEALT-RLGGIADYFL 360


>gi|238759093|ref|ZP_04620262.1| Carbamoyltransferase hypF [Yersinia aldovae ATCC 35236]
 gi|238702641|gb|EEP95189.1| Carbamoyltransferase hypF [Yersinia aldovae ATCC 35236]
          Length = 762

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +AL +A   L AG  +A     V GL       D+ N  A+ RL E K RP+  PL   +
Sbjct: 202 SALEQAAVALLAGDIVA-----VKGLGGFHLAVDATNAVAVARLRERKHRPS-KPLAVML 255

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D   ++   S    +  L  L  P    +++     + +       L      +P    
Sbjct: 256 PDADWLQSCVSSADHTALLGLLRSPAAPIVLVAKQPESPLCAAVAPELPEIGVMLPANPL 315

Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157
           +  L++    PL + S N  G+    + +  LS+
Sbjct: 316 QHLLLQQVARPLVMTSGNGRGKPPALSNQQALSA 349


>gi|312113761|ref|YP_004011357.1| (NiFe) hydrogenase maturation protein HypF [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218890|gb|ADP70258.1| (NiFe) hydrogenase maturation protein HypF [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 823

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 16/193 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A   +  G  +AI      G+       D+ N  A+ RL   K+R +  PL    
Sbjct: 208 DEIEAAAALIRDGAIVAIK-----GIGGFHLACDAANEDAVTRLRAGKRR-SGKPLALMA 261

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            +++MV ++A + P      +     P+ L+        +         T  F +P    
Sbjct: 262 RNVAMVTRYAHIAPPERAALESAA-APIVLLSRRADAPPLASSIAPGQTTLGFMLPYTPL 320

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182
              L+E    P+ + S N S +             + +     +      +  L+ ++V 
Sbjct: 321 HHLLMEALPGPIVLTSGNVSDEPQSI-ANDDARERLSEIADAFLMHDRDIVNRLDDSVVR 379

Query: 183 VQCEKKVRILRPG 195
           +    +VR +R  
Sbjct: 380 L-AAGRVRTVRRA 391


>gi|74317403|ref|YP_315143.1| hydrogenase maturation protein HypF [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056898|gb|AAZ97338.1| Hydrogenase maturation protein HypF [Thiobacillus denitrificans
           ATCC 25259]
          Length = 753

 Score = 74.7 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 68/203 (33%), Gaps = 16/203 (7%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  AL  A   L AG  +A     V G+       D+RN  A+  L   K RPA  PL  
Sbjct: 201 DETALAAAVAQLRAGKIVA-----VKGVGGYHLMCDARNDPAVAALRARKPRPA-KPLAV 254

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
              D+  ++     D     L     P    ++L   +T  +       L      +P  
Sbjct: 255 MFRDLDSLRDAVHFDTDDAALLSS--PARPIVLLRKRNTNPLSAAIAPGLGEIGCMLPYS 312

Query: 123 FTKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               L+   +G PL   S N SG+  +T       + +       +      +      V
Sbjct: 313 PLHDLLLHDFGGPLVASSGNLSGEPVLTANAEA-QARLRHLADAFLHHDRPIVRPADDPV 371

Query: 182 NVQCEKKVRILRPG-GLEIETLK 203
             +     R LR G GL    L+
Sbjct: 372 YRRIAGAPRPLRLGRGLAPLELE 394


>gi|290953955|ref|ZP_06558576.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312676|ref|ZP_06803422.1| Sua5_yciO_yrdC family protein [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 106

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 47/95 (49%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            + + L++    LD    IAIPT++ Y LA   ++   I ++ +I+   + +       D
Sbjct: 12  NNLSELKELANILDNDGIIAIPTDSGYALACRMKSKKGIDKIIKIRNFDSSHNFTLCCKD 71

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST 101
           +S + ++A VD  +  L K + PGP T +L+    
Sbjct: 72  LSEIFEYAKVDNNAYRLLKRYTPGPYTFILNATKK 106


>gi|149194390|ref|ZP_01871487.1| transcriptional regulatory protein HypF [Caminibacter
           mediatlanticus TB-2]
 gi|149135565|gb|EDM24044.1| transcriptional regulatory protein HypF [Caminibacter
           mediatlanticus TB-2]
          Length = 727

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 25/189 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +      +  G  +AI      GL       D+ N  ++  L + K RP   P      D
Sbjct: 205 IEFIANKIKEGKIVAIK-----GLGGFHLVCDATNEKSVYELRKRKNRPL-KPFAMMFRD 258

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           I M+KK+A +      L  L    P+ +V        I       +      +P      
Sbjct: 259 IEMIKKYADISNKEKELI-LSKERPIVIVKKKKELKGIAD----KIDRYGVFLPYTPIHY 313

Query: 127 LI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQC 185
           L+ +    P+   SAN S +  I N K ++   +   +  I+D           I+N   
Sbjct: 314 LLFDFLDFPIVATSANISDEPIIRNSKELI-EKLGSVVDFILDNNRD-------IINACD 365

Query: 186 EKKVRILRP 194
           +  V+++  
Sbjct: 366 DSVVQVVNE 374


>gi|170076835|ref|YP_001733473.1| [NiFe] hydrogenase maturation protein HypF [Synechococcus sp. PCC
           7002]
 gi|169884504|gb|ACA98217.1| [NiFe] hydrogenase maturation protein HypF [Synechococcus sp. PCC
           7002]
          Length = 758

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 20/214 (9%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61
           T+ + L  A +++  G  +A+      GL       D+RN  A+++L   K+RP   P  
Sbjct: 192 TNQSPLEAAIQYIRDGKIVALK-----GLGGFQLLVDARNNKAVQQLRGRKQRP-DKPFA 245

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               D+  +K     D     L + F       T++L      ++      +       +
Sbjct: 246 VMYPDLPSIKN----DCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVML 301

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+++   P+   S NRS +    +    L          +I        ++ 
Sbjct: 302 PYTPLHHLLLKSLNFPVIATSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVDD 361

Query: 179 TIVNVQCEKKVRILRPGGLEIE--TLKRAISVEL 210
           ++V V     + + R  G   E  TLKR +S  +
Sbjct: 362 SVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNV 395


>gi|22652029|gb|AAN03573.1|AF381045_10 hydrogenase maturation protein HypF [Synechococcus sp. PCC 7002]
          Length = 766

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 20/214 (9%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61
           T+ + L  A +++  G  +A+      GL       D+RN  A+++L   K+RP   P  
Sbjct: 200 TNQSPLEAAIQYIRDGKIVALK-----GLGGFQLLVDARNNKAVQQLRGRKQRP-DKPFA 253

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               D+  +K     D     L + F       T++L      ++      +       +
Sbjct: 254 VMYPDLPSIKN----DCFLSQLEEAFLTSQASPTVLLQKKKEFNLAENVAPHNPNLGVML 309

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P       L+++   P+   S NRS +    +    L          +I        ++ 
Sbjct: 310 PYTPLHHLLLKSLNFPVIATSGNRSDEPICIDETEALERLKNIADGFLIHNRRILRPVDD 369

Query: 179 TIVNVQCEKKVRILRPGGLEIE--TLKRAISVEL 210
           ++V V     + + R  G   E  TLKR +S  +
Sbjct: 370 SVVRVMNNTPIILRRSRGYAPEPLTLKRTLSKNV 403


>gi|50120190|ref|YP_049357.1| hydrogenase maturation protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610716|emb|CAG74161.1| hydrogenase maturation protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 767

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 27/169 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEI-KKRPAMNPLIC 62
             AL+ A   L AG  +AI      G+       D++N  A+ RL  + K RPA  PL  
Sbjct: 206 EAALQAAVAMLKAGGIVAIK-----GIGGFHLACDAQNDEAV-RLLRLRKHRPA-KPLAV 258

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V + S + +  +        A+L  P    +++D      +      +L      +P  
Sbjct: 259 MVENFSGLPELTA--------ARLSSPAAPIVLVDKQIIGFLSKDIAPDLNDVGVMLPSN 310

Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             + L+ +  G PL + S N SG+      +  LS      +  I DG 
Sbjct: 311 PLQHLLMQDIGRPLVMTSGNLSGRPPALTNEQALSE-----LAGIADGW 354


>gi|294670088|ref|ZP_06735038.1| protein RimN [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|291308131|gb|EFE49374.1| protein RimN [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 195

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 19 LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
          L  G  IA PTE+ YGL     +  A+++L  +K+RP    +I   + +  ++  
Sbjct: 17 LKRGGLIAYPTESCYGLGCLPTHTKALKKLIRLKRRPQHKGMIVIGNKLDRLRPL 71


>gi|291532641|emb|CBL05754.1| [NiFe] hydrogenase maturation protein HypF [Megamonas hypermegale
           ART12/1]
          Length = 769

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 15/193 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            +++KA E +  G  +A     V G+       D+ N  A+  L + K R    P     
Sbjct: 206 ESIKKAHELIKKGAIVA-----VKGIGGYHLVCDAFNEEAVANLRQRKIR-EDKPFAVMA 259

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +++ +VKK   V+     L       P+ ++L      ++      +       +     
Sbjct: 260 TNLDIVKKICEVNDKEEELLTS-MQAPI-VLLHKAKAYNLASKVAPHNAYLGVMIAYAPI 317

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNV 183
             L+        + SAN S +  +   +   S  +      I+    I +  ++ ++V V
Sbjct: 318 HYLLLNDDDVFVMTSANLSDEPIVYQDEEAKSH-LSTIADYILSHNRIIQTRVDDSVVRV 376

Query: 184 QCEKKVRILRPGG 196
             ++++ I R  G
Sbjct: 377 FNDRQMLIRRSRG 389


>gi|254417261|ref|ZP_05031005.1| (NiFe) hydrogenase maturation protein HypF [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175914|gb|EDX70934.1| (NiFe) hydrogenase maturation protein HypF [Microcoleus
           chthonoplastes PCC 7420]
          Length = 847

 Score = 74.3 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 110/333 (33%), Gaps = 70/333 (21%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +  S+ +   C  L  G  +AI      GL       D+ N T +++L   K+R    P
Sbjct: 204 KMDTSDPIDTVCTLLKQGEIVAIK-----GLGGIHLACDATNETTVQQLRSRKQR-YHKP 257

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLV--LDLLSTTDIHPL---------- 107
                 D+ +++++ +++     L +   P P+ L+  +   +     P           
Sbjct: 258 FALMARDLEVIEQYCTLNDQEKELFQS-PPAPIVLIDVIPNRANCRDAPWRVSTAKIADS 316

Query: 108 STANLKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
                 T  F +P      LI +   +P+ + S N S +    + +   S  + K    +
Sbjct: 317 VAPGQTTLGFMLPYTPLHHLIMQRLDYPIILTSGNLSDEPQCIDNQDA-SLKLGKIADYL 375

Query: 167 IDGGISKIGL--ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPG 224
           +      +    +S +  +Q +++++    GG     + +  + E              G
Sbjct: 376 LLHNRDIVNRVDDSVVRVIQSKRQLQNFDGGGFSHIRVTKNDNCETRPYR---------G 426

Query: 225 MLKSH-----------YAPRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKT- 272
            +  H           YAP+       I++ P              ++N    L   +  
Sbjct: 427 TMARHIHIQTLRRARGYAPKP------INLPPGFEKCPPILAMGSELKNTFCLLRDGQAI 480

Query: 273 -----GKLKEAAF--------NLFNYMKIADDS 292
                G L+ AA         NL+  + + D  
Sbjct: 481 LSQHLGDLENAAAFNAYQDTLNLY--LNLFDHK 511


>gi|206900558|ref|YP_002251596.1| [NiFe] hydrogenase maturation protein HypF [Dictyoglomus
           thermophilum H-6-12]
 gi|206739661|gb|ACI18719.1| [NiFe] hydrogenase maturation protein HypF [Dictyoglomus
           thermophilum H-6-12]
          Length = 742

 Score = 74.3 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 14/220 (6%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57
           I      +  ++  E+LD G  +AI      G+       D+     +R+L E KKRP+ 
Sbjct: 187 IYGEESKDLFKRISEYLDEGKILAIK-----GIGGFHLACDATQDDTVRKLRERKKRPS- 240

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            P    + DI  +K++  V      + K     P+ ++L +    DI PL          
Sbjct: 241 KPFALMMKDIETIKEYCFVSEEEEKILKSK-QSPI-VLLRIKDLKDISPLVAPGNNYLGV 298

Query: 118 RVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            +P      LI + +  PL + S N S +  + + +  +          +      K  +
Sbjct: 299 MLPYAPYHHLIFDHFKKPLIMTSGNLSDEPIVKDNEEAMERLKNIADIFVFHNREIKHRI 358

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
           + ++V V+ ++   I R  G   + +K  I ++    +  
Sbjct: 359 DDSVVFVENKEVQIIRRARGYAPDPVKIPIKLKPTLALGG 398


>gi|251771013|gb|EES51597.1| putative translation factor (SUA5)-like protein [Leptospirillum
           ferrodiazotrophum]
          Length = 208

 Score = 74.3 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 15/179 (8%)

Query: 17  EFLDAGLPIAIPTETVYGLAVDSR---NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           ++L  G  +  P E  Y L+            +RLY IK RP+  P++     + +V + 
Sbjct: 21  QWLRQGGVLGFPAEYAYALSEVPLWRAREDG-QRLYRIKGRPSGKPVLYLAGSLRVVARF 79

Query: 74  ASVDPLSLHLAKLFW---PGPLTLVLDLLSTTDIHPLSTANLKTACFRV-PCGFTKKLIE 129
           A++        + F    P   T +L          L  A      FR+ P    ++ + 
Sbjct: 80  AALPRDPRR--RRFLAEPPEFRTFLLPAAP--LAISLGMAKYGKVAFRIPPDPILRQFLR 135

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKK 188
               PL+  S N SGQ         +          ++DGG       S IV++   ++
Sbjct: 136 FLDAPLSGTSLNPSGQP-PLKTPEAIRQVFPDL--ALVDGGFRPGFPVSPIVDLSTAER 191


>gi|206895108|ref|YP_002247264.1| [NiFe] hydrogenase maturation protein HypF [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737725|gb|ACI16803.1| [NiFe] hydrogenase maturation protein HypF [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 764

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 15/222 (6%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           I D + LRK  + L  G  +AI +   Y LA D+ N TA+ RL ++K+RP   P     S
Sbjct: 197 IADPD-LRKTVDILKDGKVVAIKSLGGYLLACDALNETAVNRLRKLKRRPQE-PFALM-S 253

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            +  ++    V+     L +   P    ++L       +  +         F +P     
Sbjct: 254 TLPNIENFCYVNSAEKDLLES--PAAPIVLLQKKPYGSLPEVVAPGQNYLGFMLPYSPLH 311

Query: 126 KLIETYGHP---LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV 181
            +I  Y  P   L + SAN  G++     +      + +    ++    + +  ++ ++V
Sbjct: 312 HII-FYHWPEAVLVMTSANLHGEVIY--YEESDLPKLLEMADYVLTHDRAIVTHVDDSVV 368

Query: 182 NVQCEKKVRILRPGGLEIETLK---RAISVELEYCVDETSTP 220
            +  +    I R  G     +K   +     L    DE +TP
Sbjct: 369 QMLSDGPHLIRRSRGYVPLPIKLSNQCKVPILATGGDEKATP 410


>gi|257053408|ref|YP_003131241.1| (NiFe) hydrogenase maturation protein HypF [Halorhabdus utahensis
           DSM 12940]
 gi|256692171|gb|ACV12508.1| (NiFe) hydrogenase maturation protein HypF [Halorhabdus utahensis
           DSM 12940]
          Length = 766

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 18/203 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+ KA + L  G  +AI      G+       D+ +P  +  L E   RP   P    
Sbjct: 204 DDAIAKAGDRLADGELVAIK-----GIGGTHLACDATDPAVVETLRERTGRPE-KPFALM 257

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT-DIHPLSTANLKTACFRVP-C 121
             D+  V+  A +        +     P+ L+        D     +  LKT    +P  
Sbjct: 258 APDLEAVESVAQISDTERDALEDTR-RPILLLDGRRENRPDWFDTVSPGLKTVGVMLPYS 316

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLEST 179
           G   +L E    PL + SAN  G    T+   IL + +   I   +  D  I     +S 
Sbjct: 317 GLHHRLFEHIEGPLVMTSANMPGVPMATDRASIL-ADLDGVIDAALVHDREIVMRCDDS- 374

Query: 180 IVNVQCEKKVRILRPGGLEIETL 202
           +      ++  + R  G   E+L
Sbjct: 375 VARFSGGQRRFVRRSRGWVPESL 397


>gi|206602460|gb|EDZ38941.1| Putative translation factor (SUA5) [Leptospirillum sp. Group II
           '5-way CG']
          Length = 204

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 78/196 (39%), Gaps = 30/196 (15%)

Query: 17  EFLDAGLPIAI-----------P----TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           E L  G  IA+           P    T TV             RRL+ IK R    P++
Sbjct: 18  EVLREGGVIALSAEYAYALAEAPEWDRT-TV-------FRSEKNRRLFSIKARSPGKPIL 69

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                +S+V + A +         +  WP   TLVL       +H   + N     FR+P
Sbjct: 70  YLAGSLSIVARFARLPATVRCRRHVSRWPNFRTLVLPARP-LAVHLGMSHNGG-VAFRIP 127

Query: 121 CGFTKKL-IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
              + +L +   G PL+  S N SG   + + + I  +     +  +++ G+   G  S 
Sbjct: 128 EERSLRLFLNFLGTPLSGTSLNLSGCPPLRSPEEICRAFPF--LDGVVEAGVLPGGPPSP 185

Query: 180 IVNVQCEKKVRILRPG 195
           +++V    + R++RPG
Sbjct: 186 VIDVTKCPE-RVVRPG 200


>gi|295697076|ref|YP_003590314.1| (NiFe) hydrogenase maturation protein HypF [Bacillus tusciae DSM
           2912]
 gi|295412678|gb|ADG07170.1| (NiFe) hydrogenase maturation protein HypF [Bacillus tusciae DSM
           2912]
          Length = 756

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 19/165 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  ALR+A   L  G  +A     V     Y LA D++N  A+R L E K+R A  P   
Sbjct: 200 DEAALREAVHLLGRGAIVA-----VKGLGGYHLACDAKNAGAVRALRERKRRGA-KPFAV 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
              D+++ ++   + P +  L       P+ L        ++ P +          +P  
Sbjct: 254 MAKDLNVARELVDLSPEAEALLTSAM-RPIVLAPARRPLPEVAPDN----GDLGVMLPYT 308

Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPL 165
               L+  +G P  L + SANRS +  +   +      +      
Sbjct: 309 PLHHLLFAFGAPPVLVMTSANRSSEPIVYRDEEA-RERLRGIADA 352


>gi|157165419|ref|YP_001466895.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter concisus
           13826]
 gi|157101532|gb|EAT97227.2| [NiFe] hydrogenase maturation protein HypF [Campylobacter concisus
           13826]
          Length = 741

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 66/171 (38%), Gaps = 15/171 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           M  + + A ++A   ++ G  +AI      GL       D+ N  A+  L   K RP+  
Sbjct: 194 MLASKNEAAKEAARLINEGKILAIK-----GLGGFHLVCDATNEAAVCELRARKHRPS-K 247

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P      ++   ++ A +      L       P+ ++L+  + ++I      NL      
Sbjct: 248 PFALMSKNLQNAREIAQISEAEAKLLTSNL-KPI-VLLEAKNGSNIAKSVAPNLNKLGVM 305

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           +   G    L +   H +   SAN SG++ I +    L   + + I   +D
Sbjct: 306 LAFSGIHLLLFDYLEHDIIATSANISGEVVIKDESE-LREKLGEVIDFYLD 355


>gi|238794776|ref|ZP_04638379.1| Carbamoyltransferase hypF [Yersinia intermedia ATCC 29909]
 gi|238725930|gb|EEQ17481.1| Carbamoyltransferase hypF [Yersinia intermedia ATCC 29909]
          Length = 761

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 2/170 (1%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LAVD+ N  A+ RL + K+RP+  PL   +     + +    +  +  L  L  P    +
Sbjct: 227 LAVDATNAAAVARLRQRKQRPS-KPLAVMLPHADWLSRCVQSNDSAALLRVLRSPAAPIV 285

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKH 153
           ++   + + +       L      +P    +  L++  G PL + S N  G+    + + 
Sbjct: 286 LVSSRADSPLCAALAPGLPEIGVMLPANPLQHLLLQQVGRPLVMTSGNGRGKPPALSNEQ 345

Query: 154 ILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
            L +        ++         + ++V +       + R  G   +  +
Sbjct: 346 ALGALRDIADHWLLHDRQIVQRADDSLVRLTGSGAEMLRRARGYVPDAFE 395


>gi|330448634|ref|ZP_08312282.1| [NiFe] hydrogenase maturation protein HypF [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492825|dbj|GAA06779.1| [NiFe] hydrogenase maturation protein HypF [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 791

 Score = 73.9 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 23/174 (13%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+ +  + +  G  +AI      G+       D+ NP A+  L  +K RP+  PL   V
Sbjct: 217 TAIEQLAQKIKNGDIVAIK-----GIGGFHLACDATNPQAVANLRLLKHRPS-KPLAIMV 270

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----TTDIHPLSTANLKTACFRVP 120
           SD  + K+      +     +     P+ L+    +       I      N+       P
Sbjct: 271 SDAGIAKEVVEGCDVEWQALEAQT-RPIVLMRKRDAQCGQDVKIADDLAPNVPYLGVMQP 329

Query: 121 CGFTKKLI------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                 L+            L + SAN SG    T +  + S+     I  I+D
Sbjct: 330 YTPLHYLLFAELEKLGATSALVMTSANLSGMPIATELAQV-SAQFSGSISAILD 382


>gi|254479471|ref|ZP_05092797.1| (NiFe) hydrogenase maturation protein HypF [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034594|gb|EEB75342.1| (NiFe) hydrogenase maturation protein HypF [Carboxydibrachium
           pacificum DSM 12653]
          Length = 751

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 37/240 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            + ++   + L  G  +AI      G+       ++ +  A+  L   KKR    P    
Sbjct: 202 DDEIKCVAKALKEGKIVAIK-----GIGGFHLAVNALDDEAVATLRRRKKR-YGKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + D+  VKK+  V P    L          +VL       +      +L T    +P   
Sbjct: 256 MRDVEEVKKYCIVSPEEERLL---LSQRRPIVLLKKKGEKLAKGIADDLDTLGVMLPYAP 312

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              L+ E    P+ + S N S +    + +  L   +     + +            IVN
Sbjct: 313 IHYLLMEEIDFPIVMTSGNVSEEPICKDNEEAL-EKLKDIADVFLLNNRD-------IVN 364

Query: 183 VQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HYA 231
            + +  V     G   I  ++RA       +    +  ++  + G            HYA
Sbjct: 365 -RIDDSVTSFNAGAERI--IRRARGYAPQPILLKKEVKASILAVGGFYKNTFCMTKGHYA 421


>gi|20806660|ref|NP_621831.1| hydrogenase maturation factor [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515109|gb|AAM23435.1| Hydrogenase maturation factor [Thermoanaerobacter tengcongensis
           MB4]
          Length = 751

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 37/240 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            + ++   + L  G  +AI      G+       ++ +  A+  L   KKR    P    
Sbjct: 202 DDEIKCVAKALKEGKIVAIK-----GIGGFHLAVNALDDEAVATLRRRKKR-YGKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + D+  VKK+  V P    L          +VL       +      +L T    +P   
Sbjct: 256 MRDVEEVKKYCIVSPEEERLL---LSQRRPIVLLKKKGEKLAKGIADDLDTLGVMLPYAP 312

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              L+ E    P+ + S N S +    + +  L   +     + +            IVN
Sbjct: 313 IHYLLMEEIDFPIVMTSGNVSEEPICKDNEEAL-EKLKDIADVFLLNNRD-------IVN 364

Query: 183 VQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HYA 231
            + +  V     G   I  ++RA       +    +  ++  + G            HYA
Sbjct: 365 -RIDDSVTSFNAGAERI--IRRARGYAPQPILLKKEVKASILAVGGFYKNTFCMTKGHYA 421


>gi|258545441|ref|ZP_05705675.1| translation factor (SUA5) [Cardiobacterium hominis ATCC 15826]
 gi|258519303|gb|EEV88162.1| translation factor (SUA5) [Cardiobacterium hominis ATCC 15826]
          Length = 186

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 8/178 (4%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK-RPAMNPLICHVSDISMVKKHASV 76
            L +    A PTE VYGL  D R P     +  +K  R     ++   ++ +        
Sbjct: 13  LLHSRQVFAYPTEAVYGLGGDPRAPEVFAEILRLKGARTPGQGMLLVAANWAQCADWVDG 72

Query: 77  DPLSL--HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGH 133
              +L   L  L      T +L   ++  +  L  A       RV      ++L      
Sbjct: 73  LDAALIAKLQALAADRATTFILPAAASVPV-YLRDAASGRIAIRVSQHPLVRQLCTWADS 131

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           PL   SAN S      +   +        +P+I  G        S + +V     +R 
Sbjct: 132 PLISTSANPSAASPARSAAEV--QHYFPALPVIA-GETGGEARPSRLWDVANATALRD 186


>gi|119774810|ref|YP_927550.1| hydrogenase maturation protein HypF [Shewanella amazonensis SB2B]
 gi|119767310|gb|ABL99880.1| hydrogenase maturation protein HypF [Shewanella amazonensis SB2B]
          Length = 771

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 26/199 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           L +    L  G   AI      GL       D+ +  A+  L   K RPA  PL   V D
Sbjct: 207 LDECARLLKQGAIFAIK-----GLGGFHLVCDATHEEAVSSLRTRKVRPA-KPLAVMVKD 260

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST----------ANLKTAC 116
           I+M +  A        L       P+ ++          P  T            +    
Sbjct: 261 IAMARSFADGAQEEWQLL-SSRERPIVIMKKAAEQHRAVPKDTQHRELAASVAPGIDRIG 319

Query: 117 FRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI- 174
             +P       L+++   PL   SANRSG+  I      +   +   +  I+D     + 
Sbjct: 320 LFLPYTPLHALLLDSVDRPLVATSANRSGEPIIIAAVD-IHQKLAGVVDFILDHDRPIVS 378

Query: 175 GLESTIVNVQCEKKVRILR 193
           G + ++V   C  +++++R
Sbjct: 379 GCDDSVVQW-CAGQLQVIR 396


>gi|17228189|ref|NP_484737.1| hydrogenase maturation protein [Nostoc sp. PCC 7120]
 gi|17130039|dbj|BAB72651.1| hydrogenase maturation protein [Nostoc sp. PCC 7120]
          Length = 785

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 20/205 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      G+       D+    A+ +L + K+R    P     
Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GIGGFHLACDATQEAAVEKLRQRKRR-YDKPFALMA 258

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL----STTDIHPLSTANLKTACFRVP 120
            DI++++K+  V+     L     P    ++L+      S+  I         T  F +P
Sbjct: 259 RDINVIEKYCFVNDRERELL--VSPAAPIVLLEKRTEEISSFPIASTVAPGQNTLGFMLP 316

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178
                  +++    P+ + S N + +             +       +      +  ++ 
Sbjct: 317 YTPLHHLILKRMNRPIVLTSGNIADEPQCV-ANDEAKEKLSHIADYFLLHNREIVNRVDD 375

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           ++V V   K   + R  G     +K
Sbjct: 376 SVVRVIDNKIQIMRRARGYAPAPIK 400


>gi|307131784|ref|YP_003883800.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Dickeya
           dadantii 3937]
 gi|306529313|gb|ADM99243.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Dickeya
           dadantii 3937]
          Length = 770

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 12/200 (6%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+ +A   L AG  +    E V GL       D+ +  A+ RL   K RPA  PL   
Sbjct: 210 DDAIMQAAAALCAGQIV----E-VKGLGGFHLACDATDAQAVARLRARKHRPA-KPLAVM 263

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +     + + +S    +  L  +  P    ++L L     +       L      +P   
Sbjct: 264 LPGADWLARCSSAAEPTSALRMMQSPAAPIVLLPLRHDGALAAGIAPGLDEVGLMLPANP 323

Query: 124 TKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
            + L+      PL + S N  G+         ++         ++         + ++V 
Sbjct: 324 LQHLLLAAVARPLVMTSGNAGGKPPALENTQAMAELTGIADLWLLHDRDIVQRADDSVVR 383

Query: 183 VQCEKKVRILRPGGLEIETL 202
           +Q E+   + R  G   + L
Sbjct: 384 MQGERAEMLRRARGYVPDAL 403


>gi|255523890|ref|ZP_05390854.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           carboxidivorans P7]
 gi|296185940|ref|ZP_06854345.1| carbamoyltransferase HypF [Clostridium carboxidivorans P7]
 gi|255512452|gb|EET88728.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           carboxidivorans P7]
 gi|296049208|gb|EFG88637.1| carbamoyltransferase HypF [Clostridium carboxidivorans P7]
          Length = 778

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 21/198 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+  A + +  G   AI      G+       D+ N  A++RL ++K RPA  P    + 
Sbjct: 201 AITYARQVIHDGGIAAIK-----GIGGFHLCCDATNREAVQRLRKLKTRPA-KPFAVMMR 254

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+  V +   V  +   +       P+ ++L    +  +      +       +P    +
Sbjct: 255 DMETVGRECEVTKVQKEVLDGH-QKPI-ILLKRKPSGRVCDAVAPDNPKVGVMLPYAPLQ 312

Query: 126 KLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLES 178
            LI TY      P  L + S N SG     +    ++  + K   +I+    + +I  + 
Sbjct: 313 LLIFTYDDDIVMPDCLVMTSGNTSGAPICRDDNDAITE-LSKLCDVILSHNRMIRIRADD 371

Query: 179 TIVNVQCEKKVRILRPGG 196
           ++++   EK   I R  G
Sbjct: 372 SVMDFFEEKPYMIRRSRG 389


>gi|238755282|ref|ZP_04616626.1| Carbamoyltransferase hypF [Yersinia ruckeri ATCC 29473]
 gi|238706516|gb|EEP98889.1| Carbamoyltransferase hypF [Yersinia ruckeri ATCC 29473]
          Length = 759

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 14/203 (6%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D++A++ A   L +G  +AI      GL       D+   TA+ RL E K+RP   PL  
Sbjct: 184 DADAIQSAVAALRSGKIVAIK-----GLGGFHLACDATQQTAVVRLRERKQRP-TKPLAV 237

Query: 63  HVSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
            +  I+ + +  S D  SL L  L   P    ++    +++ +      NL      +P 
Sbjct: 238 MLPSINWLAQ-CSDDHRSLALRDLLQSPAAPIVLTRHRASSPLCAAIAPNLDEVGLMLPF 296

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L++    PL + S N +    +          +      ++        ++ ++
Sbjct: 297 TPLHHLLMQAMQTPLVMTSGNSADCAPVITNNDARRQLVDIADLWLLHNRDIVQRVDDSL 356

Query: 181 VNVQCEKKVRILRPGGLEIETLK 203
           V    +    + R  G   + L+
Sbjct: 357 VRWSPQGNEVLRRARGYVPDALR 379


>gi|254459018|ref|ZP_05072441.1| (NiFe) hydrogenase maturation protein HypF [Campylobacterales
           bacterium GD 1]
 gi|207084289|gb|EDZ61578.1| (NiFe) hydrogenase maturation protein HypF [Campylobacterales
           bacterium GD 1]
          Length = 733

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 19/198 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ + K  EF+  G  +A+      GL       D+ N   I RL   K RP   PL   
Sbjct: 197 TDTIEKTAEFIKNGKIVAMK-----GLGGFHIVCDATNDEVIERLRVHKNRP-TKPLAIM 250

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVP-C 121
             D+  VK  AS       L       P+ ++   L +   I      N+      +P  
Sbjct: 251 CKDLEQVKLLASASTKEQELL-ASKEAPIVILNKALDAKIKISDKVAPNIDRIGCFLPYT 309

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTI 180
                L +   +P+   SAN   +  I   +  +   +   +  ++D     + G++ ++
Sbjct: 310 ALHHLLFKQLKNPIVATSANLGSEPIIIKAED-IKEKL-PFVDFVLDFDRDIVNGVDDSL 367

Query: 181 VNVQCEKK--VRILRPGG 196
           V V       +R+ R   
Sbjct: 368 VQVVNGNTQMLRLSRGFA 385


>gi|281419472|ref|ZP_06250486.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           thermocellum JW20]
 gi|281406878|gb|EFB37142.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           thermocellum JW20]
          Length = 753

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +T+ +A   A   +++G  IA     V G+              + RL E+K R A  P
Sbjct: 202 ELTEKDAFHAAANIIESGGIIA-----VKGIGGYHFACSPFLEDTVLRLRELKGREA-KP 255

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                  +  ++K+  V      L K        +VL  L    + P +          +
Sbjct: 256 FAIMFESVDSIRKYCVVSEKEEELLKS---KARPIVLLYLKNNSMAPSACQGSIYCGAFL 312

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
           P      L+     PL + SAN S +  I +   +LS
Sbjct: 313 PYTPLHMLLVKRCGPLIMTSANISDKPIIKDDSEMLS 349


>gi|119484432|ref|ZP_01619049.1| hydrogenase maturation protein [Lyngbya sp. PCC 8106]
 gi|119457906|gb|EAW39029.1| hydrogenase maturation protein [Lyngbya sp. PCC 8106]
          Length = 796

 Score = 73.6 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 24/173 (13%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  IAI      GL       D+ N   +++L + K RP   PL    
Sbjct: 211 DEVDAVCTLLQRGQIIAIK-----GLGGFHLACDATNEEIVQKLRQRKHRP-DKPLALM- 263

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL---------LSTTDIHPLSTANLKTA 115
           +DI++++K+  V P    L +     P+ L+            LS   I P         
Sbjct: 264 ADINIIEKYCFVTPEERELLESSA-APIVLLRRKTSFKQSDISLSKNQIAPSIAPAQNYL 322

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            F +P        +     P+ + SAN S      +   +  S +       I
Sbjct: 323 GFMLPYTPLHHLALRRLEVPIVLTSANFSDDPQCIDNAEV-RSKLSNVADYFI 374


>gi|125975495|ref|YP_001039405.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           thermocellum ATCC 27405]
 gi|256004217|ref|ZP_05429200.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           thermocellum DSM 2360]
 gi|125715720|gb|ABN54212.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           thermocellum ATCC 27405]
 gi|255991807|gb|EEU01906.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           thermocellum DSM 2360]
 gi|316939615|gb|ADU73649.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           thermocellum DSM 1313]
          Length = 753

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 14/157 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +T+ +A   A   +++G  IA     V G+              + RL E+K R A  P
Sbjct: 202 ELTEKDAFHAAANIIESGGIIA-----VKGIGGYHFACSPFLEDTVLRLRELKGREA-KP 255

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                  +  ++K+  V      L K        +VL  L    + P +          +
Sbjct: 256 FAIMFESVDSIRKYCVVSEKEEELLKS---KARPIVLLYLKNNSMAPSACQGSIYCGAFL 312

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
           P      L+     PL + SAN S +  I +   +LS
Sbjct: 313 PYTPLHMLLVKRCGPLIMTSANISDKPIIKDDSEMLS 349


>gi|217979850|ref|YP_002363997.1| (NiFe) hydrogenase maturation protein HypF [Methylocella silvestris
           BL2]
 gi|217505226|gb|ACK52635.1| (NiFe) hydrogenase maturation protein HypF [Methylocella silvestris
           BL2]
          Length = 809

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           + +  A   +  G  +AI     Y LA D+ N  AI  L E K+R    P      D+ +
Sbjct: 216 DDVDAALSLIQKGEIVAIKALGGYQLACDATNAEAIATLRERKRRDR-KPFALMARDLEV 274

Query: 70  VKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKL 127
           V+++A+V    +  L     P    ++L    +  +       L T  F +P       L
Sbjct: 275 VRRYATVGADEAAALTSREAP---IVLLVAGGSERLPDQIAPGLATLGFMLPSTPLHLLL 331

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154
           +     P+ + S N S +  +      
Sbjct: 332 LRRMTRPVVMTSGNLSDEPQVIGDAEA 358


>gi|53804353|ref|YP_114054.1| [NiFe] hydrogenase maturation protein HypF [Methylococcus
           capsulatus str. Bath]
 gi|53758114|gb|AAU92405.1| [NiFe] hydrogenase maturation protein HypF [Methylococcus
           capsulatus str. Bath]
          Length = 754

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/161 (23%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  AL    E L  G  +A     V G+       D+R+  A+ RL E K+RP   PL  
Sbjct: 201 NEPALSGCIEALRQGQVVA-----VKGVGGYHLLCDARSDAAVGRLRERKRRP-DKPLAV 254

Query: 63  HVS-----DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            +       +  + + A   P    L     P    +++     +D+  L    L     
Sbjct: 255 LIPWFEGEGVDWLARLAEPRPDERELLAS--PLRPIVIVQRSVDSDLSGLIAPGLDEIGL 312

Query: 118 RVPCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157
             P      L+   YG PL   SAN SG+  +T+   +   
Sbjct: 313 MYPYSPLHHLLAGDYGAPLVATSANLSGEPVLTDGAEVERQ 353


>gi|320161188|ref|YP_004174412.1| hydrogenase maturation protein HypF [Anaerolinea thermophila UNI-1]
 gi|319995041|dbj|BAJ63812.1| hydrogenase maturation protein HypF [Anaerolinea thermophila UNI-1]
          Length = 765

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 17/160 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+KA + L  G  +AI      GL       D+ N TA++ L   KKR +  P    
Sbjct: 204 EEALQKARQLLKEGAILAIK-----GLGGFHLACDAANETAVKTLRNRKKR-SDKPFAVM 257

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D+S V+K A  D     L  L    P+ ++L       I P  + ++ T    +P   
Sbjct: 258 VFDLSKVEKIAEFDEEEKALL-LSRQKPI-VLLRKKVDAPIVPEVSPDVNTVGVMLPYTP 315

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSI 159
              L+      +   L + S N S +      K      +
Sbjct: 316 LHYLLLEPEENFPEVLVMTSGNLSEEPIAYEDKEAQERLL 355


>gi|193214863|ref|YP_001996062.1| (NiFe) hydrogenase maturation protein HypF [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088340|gb|ACF13615.1| (NiFe) hydrogenase maturation protein HypF [Chloroherpeton
           thalassium ATCC 35110]
          Length = 781

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 18/170 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            I  ++ + +    L  G  +AI      GL       D+ N  A++RL   K R    P
Sbjct: 219 EILTADPISEIVRLLKLGHIVAIK-----GLGGFHLACDAENDEAVKRLRARKHRDE-KP 272

Query: 60  LICHVSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           L   V D+S  +K   + D  +  L     P    ++L   + T +              
Sbjct: 273 LAVMVQDLSSAQKFCQISDEEARALCSAQSP----ILLLKKNGTGLPESIAPGNSQLGIL 328

Query: 119 VPCGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           +P      L+         + SAN S +    +        + +     +
Sbjct: 329 LPYTPVHHLLMQSQLQAAVMTSANLSDEPIAIDNDEAF-ERLGQIADYFL 377


>gi|75910798|ref|YP_325094.1| hydrogenase maturation protein HypF [Anabaena variabilis ATCC
           29413]
 gi|75704523|gb|ABA24199.1| Hydrogenase maturation protein HypF [Anabaena variabilis ATCC
           29413]
          Length = 786

 Score = 73.2 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 70/207 (33%), Gaps = 24/207 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      G+       D+    A+ +L + K+R    P     
Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GIGGFHLACDATQEAAVEKLRQRKRR-YDKPFALMA 258

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLKTACFR 118
            DI++++K+  V+     L       P   ++      + +S+  I            F 
Sbjct: 259 RDITVIEKYCFVNDKERELLDS----PTAPIVLLGKRTEEISSFPIASTVAPGQNILGFM 314

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176
           +P       +++    P+ + S N S +    +        +       +      +  +
Sbjct: 315 LPYTPLHHLMLKRMNRPIVLTSGNISDEPQCIDNDE-SKEKLSHIADYFLLHNREIVNRV 373

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
           + ++V V   K   + R  G    T+K
Sbjct: 374 DDSVVRVIDNKIQIMRRARGYAPATIK 400


>gi|331703156|ref|YP_004399843.1| hypothetical protein MLC_1360 [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801711|emb|CBW53864.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 166

 Score = 73.2 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 21/174 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E L     I +PT+T+YGL+        I R+ ++K      PLI  +S +  + 
Sbjct: 7   INKAVELLKNNQIIILPTDTIYGLSAIYSLENQI-RVNQVKNADITKPLIVLISSLDQLN 65

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130
               +  L+     L    P T++    S+            +   R V     K++I  
Sbjct: 66  DL-EITDLTDKDY-LLNDEPTTVIFKTKSS------------SIAIRLVKREDVKQIINK 111

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVN 182
            G P+   S N      +     +++    K I +  D         + S+I+ 
Sbjct: 112 TG-PIISTSVNLHNFKPLIKENDLIN--FNKNIEVFFDTQLNNKPSKIYSSIIK 162


>gi|307150559|ref|YP_003885943.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           7822]
 gi|306980787|gb|ADN12668.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           7822]
          Length = 786

 Score = 73.2 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 24/212 (11%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPA 56
           ++++  D  AL  A   +  G  +AI      GL       D+RN  A+  L + K RP 
Sbjct: 199 EVLAAGD-RALIAAANAIREGKIVAIK-----GLGGFHLVVDARNSAAVAELRKRKGRP- 251

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKL-----------FWPGPLTLVLDLLSTTDIH 105
             P       + +VK+   V P    L +              P   + +  L+    I 
Sbjct: 252 DKPFAVMYPGLDLVKEQCQVTPTEEELLQSAECPIVLLKFDLSPNFRSPLTPLMKGGTIS 311

Query: 106 PLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
                        +P       L+   G P+   S N S +    +    L         
Sbjct: 312 SEVAPGNPYLGVMLPYTPLHHLLMRELGFPMVATSGNVSDEPICVDELEALQKLNQIADV 371

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            ++        ++ ++V     +++ + R  G
Sbjct: 372 FLVHNRPIARPVDDSVVRTMGGREMVLRRARG 403


>gi|146338763|ref|YP_001203811.1| carbamoyl phosphate phosphatase [Bradyrhizobium sp. ORS278]
 gi|146191569|emb|CAL75574.1| carbamoyl phosphate phosphatase, [NiFe] Hydrogenase maturation
           protein [Bradyrhizobium sp. ORS278]
          Length = 752

 Score = 73.2 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 69/203 (33%), Gaps = 23/203 (11%)

Query: 14  KACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           +    L  G  +AI      GL       D+R+  A++RL   K+R    P    ++ + 
Sbjct: 200 EIAAALAEGKIVAIK-----GLGGYQMLCDARDEPAVQRLRARKQRD-GKPFAVMLASVE 253

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----CGFT 124
              + A +D     L +     P+ L   L S   + P     L      +P        
Sbjct: 254 AAGEIADLDAAERGLLEQVA-RPIVL---LRSRGRLAPSVAPGLAKIGVMLPVAPLHHLV 309

Query: 125 KKLIETYGH----PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
              +  +G      L   SAN SGQ  +T+    L         ++       I  + ++
Sbjct: 310 FDALRAHGGKRNEALVCTSANPSGQPLLTDNDEALIDLAGIADLIVTHDRDIVIRADDSV 369

Query: 181 VNVQCEKKVRILRPGGLEIETLK 203
           V +  +    I R  G   E ++
Sbjct: 370 VAMMADSPRFIRRARGYVPEPIR 392


>gi|47459206|ref|YP_016068.1| putative translation factor [Mycoplasma mobile 163K]
 gi|47458535|gb|AAT27857.1| putative translation factor [Mycoplasma mobile 163K]
          Length = 162

 Score = 73.2 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 23/163 (14%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+ +   +      LYE+K RP    +   V  I   +K    +  +   A + W
Sbjct: 22  TDTVTGIGISIHHENP-NLLYELKNRPKNKKIAIVVGSIEQARKMPFWNEKAEAFANILW 80

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147
           PG +TL+++                    R+P C   +  I   G P  + SAN+SG+  
Sbjct: 81  PGAVTLIVNDQ----------------AIRMPNCKKLQDFIIDEG-PFFLTSANKSGEDP 123

Query: 148 ITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           I       +  I  E+  I +      G  S I++++ +K++R
Sbjct: 124 IEINN---AQKIFPEVTKIYNFCKGN-GKSSIIIDIETKKRLR 162


>gi|288575006|ref|ZP_06393363.1| (NiFe) hydrogenase maturation protein HypF [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570747|gb|EFC92304.1| (NiFe) hydrogenase maturation protein HypF [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 753

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 18/220 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + + +  E+L AG  +AI      GL       D    T +  L   K RP   PL   
Sbjct: 202 EDGIGRCREYLKAGKVVAIK-----GLGGFHLACDPFEDTPVSTLRHRKGRP-DKPLAIM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
              +   ++ A +      L K     P  +VL    T  +         +    +P   
Sbjct: 256 AESLESAREIALISEEEARLLKSSR-RP--IVLCEKKTGSVAESVAPGQNSVGIMLPYTP 312

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIVN 182
              LI      L + SAN +    I++ +  LS  +       +         ++ ++V 
Sbjct: 313 LHHLILEGMRALVMTSANPTDSPLISDNEEALS-RLAHVADGFLMHNRDICMKVDDSLVA 371

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
           +  ++ V + R  G     +   +S+ + + +   +  +S
Sbjct: 372 LSGDRTVMLRRGRGYVPNPID--LSISMPHILAAGAEMKS 409


>gi|301156417|emb|CBW15888.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Haemophilus parainfluenzae T3T1]
          Length = 755

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 18/168 (10%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           T   AL++    L  G  +A     V GL       D+ N   +  L + K RP   PL 
Sbjct: 200 THETALKQTALLLQQGHIVA-----VKGLGGFHLACDANNQKTVDLLRQRKYRP-TKPLA 253

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             V D+  ++  +     +  L     P    ++L      +I      NL+     +P 
Sbjct: 254 IMVPDLQFLQDLS--SQETELLTSSAAP---IVLLAKHKVPNIADNIAPNLQEIGVMLPS 308

Query: 122 GFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              + L+      PL + SAN SGQ  +   +H +   +       + 
Sbjct: 309 NPLQHLLLRAVNRPLVMTSANASGQPPVLKNEHAV-EQLANLADFYLC 355


>gi|166368905|ref|YP_001661178.1| putative hydrogenase expression/formation protein [Microcystis
           aeruginosa NIES-843]
 gi|166091278|dbj|BAG05986.1| putative hydrogenase expression/formation protein [Microcystis
           aeruginosa NIES-843]
          Length = 754

 Score = 72.8 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 102/312 (32%), Gaps = 54/312 (17%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAM 57
           +++  D   +  A   ++ G  IAI      GL       D+RN  A+++L + K+R   
Sbjct: 202 VLAEKDQALIATA-RAIEQGKIIAIK-----GLGGFHLVVDARNTEAVQKLRQRKQR-LD 254

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            P      ++ +VKKH  V  L   L +   P    +VL       +    +        
Sbjct: 255 KPFAVMYPNLELVKKHGYVSSLESQLLQS--PAA-AIVLIKQRKNYLSAAVSPGNPYLGV 311

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            +P       L+   G P+   S N + +      K  L   +                 
Sbjct: 312 MLPYTPLHHLLLAELGFPIVATSGNLADEPICIEEKEAL-EKLG---------------- 354

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQV 236
             TI ++       I+RP  ++   ++      +          ++ G     YAP   V
Sbjct: 355 --TIADLFLVHNRPIVRP--VDDSIIREMAGKAMILR-------RARG-----YAP-FPV 397

Query: 237 RLRAIHVNPREALIRFGN--VPIKNIENAIISLNLSKTGKLKEAAF--NLFNYMKIADDS 292
           ++      P  A+  +    V I       IS ++     +       N+ + +K   + 
Sbjct: 398 KVNEGDFPPILAVGSYFKNTVAIYQKNQVFISQHIGDLDTVNAVNHFENILDSLKKLYEF 457

Query: 293 GASSIAFSSIPN 304
               IA  + P 
Sbjct: 458 APEVIACDAHPE 469


>gi|315453456|ref|YP_004073726.1| transcriptional regulatory protein hypF [Helicobacter felis ATCC
           49179]
 gi|315132508|emb|CBY83136.1| transcriptional regulatory protein hypF [Helicobacter felis ATCC
           49179]
          Length = 741

 Score = 72.8 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 77/197 (39%), Gaps = 22/197 (11%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPL 60
           I  +  L+   + L  G  +AI      G+       D+RN    +R+ EIK RP   PL
Sbjct: 189 INTTTPLQACLQTLQEGGVVAIK-----GIGGFALMGDARNIEVTQRIREIKTRP-FKPL 242

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V D+ M +  A ++ L   + +         +L   +   ++PL   NL T    +P
Sbjct: 243 SVMVRDLDMARDLAYLNSLEEQILQA----SSAPILIARAKVSLNPLIAPNLDTLGLCLP 298

Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178
                 LI      PL   SAN         ++ +   ++   +  I+D   + +  +E 
Sbjct: 299 YTPLHHLIARALNIPLIFTSANHKSAPIFHTLEQV--RALG--VEGILDHARAIVHPIED 354

Query: 179 TIVNVQCEKKVRILRPG 195
           ++V       V ++R G
Sbjct: 355 SVVRASG-GAVGVVRLG 370


>gi|294791612|ref|ZP_06756760.1| hypothetical protein
 gi|294456842|gb|EFG25204.1| [NiFe] hydrogenase maturation protein HypF [Veillonella sp. 6_1_27]
          Length = 759

 Score = 72.8 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 9/190 (4%)

Query: 17  EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           E ++ G  IAI  + V  Y L  D+RN  A++RL + K RP   PL   V  + M  +  
Sbjct: 215 ELINEGNIIAI--KGVGGYHLVCDARNDAAVQRLRKRKNRP-HKPLAIMVGSLDMAIELV 271

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            ++ + L +       P+ L+     S+  + P    +       +P     +++     
Sbjct: 272 HINDVELDVLTG-MERPIVLLERNHNSSVRLSPHVAPDNHMLGVMLPYSPMHEVLLPSDA 330

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192
              + S NRSG   + N     +  + +     +         L+ ++V V   K   I 
Sbjct: 331 AWVMTSGNRSGDSVLYNDDQAFNE-LGEVADYFLVHNREIYAPLDDSVVVVINNKPRFIR 389

Query: 193 RPGGLEIETL 202
           R  G   E +
Sbjct: 390 RSRGYVPEPI 399


>gi|282848977|ref|ZP_06258366.1| carbamoyltransferase HypF [Veillonella parvula ATCC 17745]
 gi|282581252|gb|EFB86646.1| carbamoyltransferase HypF [Veillonella parvula ATCC 17745]
          Length = 759

 Score = 72.8 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 17  EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           E ++ G  IAI  + V  Y L  D+RN  A++RL + K RP   PL   V  + M  + A
Sbjct: 215 ELINEGNIIAI--KGVGGYHLVCDARNDAAVQRLRKRKNRP-HKPLAIMVGSLDMAIELA 271

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            ++ + L +       P+ L+     S+  + P    +       +P     +++     
Sbjct: 272 HINDVELDVLTG-MERPIVLLERNHNSSVRLSPHVAPDNHMLGVMLPYSPMHEVLLPSDA 330

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192
              + S NRSG   + N     +  + +     +         L+ ++V V   K   I 
Sbjct: 331 AWIMTSGNRSGDSVLYNDDQAFNE-LGEVADYFLVHNREIYAPLDDSVVVVINNKPRFIR 389

Query: 193 RPGGLEIETL 202
           R  G   E +
Sbjct: 390 RSRGYVPEPI 399


>gi|307825739|ref|ZP_07655956.1| (NiFe) hydrogenase maturation protein HypF [Methylobacter
           tundripaludum SV96]
 gi|307733316|gb|EFO04176.1| (NiFe) hydrogenase maturation protein HypF [Methylobacter
           tundripaludum SV96]
          Length = 770

 Score = 72.8 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ L+ A E +  G  IAI      GL       ++ +  A+ RL E K+R    PL   
Sbjct: 199 ADPLKHAAELIRQGYIIAIK-----GLGGFHLACNATDADAVNRLRERKRR-YAKPLALM 252

Query: 64  VSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
            +D   + ++A +D   +  L     P    +VL       + P    +     F +P  
Sbjct: 253 -ADAITITRYALMDEEETRALHDKAAP----IVLLTAQGETLAPGVAPDDDKLGFMLPYT 307

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTI 180
                L++    P+ + S N S +   T+        +      ++    + +  L+ ++
Sbjct: 308 PLHTLLLQELDEPIVLTSGNISDEPQCTDNDEA-REKLTGIADYLLLHDRAIVNRLDDSV 366

Query: 181 VNVQCEKKVRILRPGGLEIETL 202
             +   K   + R  G   E L
Sbjct: 367 ARLMDGKIRVLRRARGYSPEAL 388


>gi|300855485|ref|YP_003780469.1| putative hydrogenase maturation protein HypF [Clostridium
           ljungdahlii DSM 13528]
 gi|300435600|gb|ADK15367.1| predicted hydrogenase maturation protein HypF [Clostridium
           ljungdahlii DSM 13528]
          Length = 802

 Score = 72.8 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 21/199 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+    + +  G   AI      G+       D+ N  A+ RL ++K RPA  P    +
Sbjct: 203 TAITYTRQVIHDGGIAAIK-----GIGGFHLCCDATNQEAVERLRKLKTRPA-KPFAVMM 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+  V++   V  +   +       P+ ++L    +  +    T +       +P    
Sbjct: 257 RDMETVERECEVTKVQKEVLDGH-QKPI-ILLKRKQSKMVCDAVTPDNPKIGVMLPYAPV 314

Query: 125 KKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177
           + LI TY      P  L + S N SG     +    ++  + K   +I+    + +I  +
Sbjct: 315 QLLIFTYDDDIVMPDCLVMTSGNTSGAPICRDDNDAITE-LSKMCDVILSHNRMIRIRAD 373

Query: 178 STIVNVQCEKKVRILRPGG 196
            ++++   EK   I R  G
Sbjct: 374 DSVMDFFEEKPYMIRRSRG 392


>gi|330939565|gb|EGH42884.1| Sua5/YciO/YrdC/YwlC [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 119

 Score = 72.8 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 86  LFWPGPLTLVLDLLSTTDIHPLS-TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRS 143
              PGP T +L+  +T ++  L      +T   RVP     + L+E  G PL   S    
Sbjct: 1   AHTPGPYTFILN--ATREVPRLVLHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIMP 58

Query: 144 GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           G     +  + +   +  ++ LIIDGGI  I   ST++N+  E + +I+R G 
Sbjct: 59  GDSVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINL-AEGEPQIVRVGC 109


>gi|170290726|ref|YP_001737542.1| hydrogenase maturation factor [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170174806|gb|ACB07859.1| Hydrogenase maturation factor [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 770

 Score = 72.8 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 20/199 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +   + +R A   LD G  +AI      GL        + +   +R+L E K+RP+  P
Sbjct: 202 KVESEDPVRDAARLLDEGKILAIR-----GLGGYHIACLATDDDVVRKLRERKRRPS-KP 255

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 ++ + +++A V  ++ +L       P   ++ + S   I  L    L      +
Sbjct: 256 FALMALNVEVAERYAVVSEMARNLLTS----PERPIVLMPSKEGISELVAPGLDLIGIML 311

Query: 120 P-CGFTKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176
           P       L+       L + S N   +   T+V       +   +   +      +  +
Sbjct: 312 PYTALHHMLLSEVRDKILIMTSGNEHNKPMCTSV-ECARERLSPIVDYFLHHNREIVNRV 370

Query: 177 ESTIVNVQCEKKVRILRPG 195
           + ++V +    +V +LR G
Sbjct: 371 DDSVVRLTGS-RVTMLRRG 388


>gi|157370663|ref|YP_001478652.1| (NiFe) hydrogenase maturation protein HypF [Serratia proteamaculans
           568]
 gi|157322427|gb|ABV41524.1| (NiFe) hydrogenase maturation protein HypF [Serratia proteamaculans
           568]
          Length = 765

 Score = 72.8 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+ N  A+ RL   K+RP   PL   + D   + +  S   L+   A L  P    +
Sbjct: 227 LACDATNTQAVERLRLRKRRP-GKPLAVMLPDAGWLVRCVSGVSLAQLQALLTSPAAPVV 285

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKH 153
           ++     + +       L      +P    + L+ +    PL + S N +G+      + 
Sbjct: 286 LVPQSPYSPLSAAVAPGLDEVGLMLPANPIQHLLMQAIQRPLVMTSGNAAGRAPALTNEQ 345

Query: 154 ILSSSIC 160
            L+  + 
Sbjct: 346 ALADLVD 352


>gi|7543926|emb|CAB87244.1| SUA5 protein [Candida albicans]
          Length = 51

 Score = 72.4 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 279 AFNLFNYMKIADDSG-ASSIAFSSIPNHGLGIAINNRLERAA 319
           + NLF Y++  D+      I    I     G+A+ NRL +AA
Sbjct: 1   SHNLFKYLREVDEEDKVELIFVEGIDETNEGLAVMNRLSKAA 42


>gi|300785674|ref|YP_003765965.1| hydrogenase maturation protein HypF [Amycolatopsis mediterranei
           U32]
 gi|299795188|gb|ADJ45563.1| hydrogenase maturation protein HypF [Amycolatopsis mediterranei
           U32]
          Length = 718

 Score = 72.4 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 68/200 (34%), Gaps = 20/200 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + L    E L  G  +A     V GL        +R+  A RRL + K R    P    V
Sbjct: 193 DPLPATVEALRDGAIVA-----VKGLGGYHLAVGARHEEAARRLRQRKHR-EDKPFAVMV 246

Query: 65  SDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +D++  ++ A V P +   L     P     ++ L    D+        +     +P   
Sbjct: 247 ADLAQARELADVGPAAEEALGSRRRP-----IVLLPKKADLAAAVAPGNRRIGLMLPYTP 301

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVN 182
              L+     P+ + SAN S +  +   + +    +       +       +  + ++V 
Sbjct: 302 LHHLLLERTGPIVLTSANVSDEPIVHRDEDL--GRLEGIADAFLTHDRPIHVRTDDSVVR 359

Query: 183 VQCEKKVRILRPGGLEIETL 202
           +   K     R  G   E +
Sbjct: 360 IVGTKPQLQRRSRGYAPEPV 379


>gi|78486374|ref|YP_392299.1| (NiFe) hydrogenase maturation protein HypF [Thiomicrospira
           crunogena XCL-2]
 gi|78364660|gb|ABB42625.1| (NiFe) hydrogenase maturation protein HypF [Thiomicrospira
           crunogena XCL-2]
          Length = 775

 Score = 72.4 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/199 (20%), Positives = 73/199 (36%), Gaps = 23/199 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+++  + L     +A       G+       D+ +   + RL + K R A  PL   
Sbjct: 214 EDAIQQIAQRLKTSGLVAFK-----GVGGFHLLCDATDSETVTRLRQKKHR-ATKPLAVL 267

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            +++ M ++ A + P  + L       P+ LV     T  +      N+      +    
Sbjct: 268 CANLEMAQQLAHLAPHEIELLTSE-VKPIVLVEKRSDTA-LCDAIAPNINQLGVFLAYTP 325

Query: 124 TKKLIETY-GHPLAIPSANRSGQISITNVKHILSSSICK----EIPLIIDGGISKIGLES 178
              L+  Y   PL   SAN SG+  +  V  +    +C      +  ++D     +   S
Sbjct: 326 LHHLLFQYIDFPLVATSANLSGEPILYEVSRVF-EKLCHPDRALVEAVLDFDREIVN-PS 383

Query: 179 --TIVNVQCEKKVRILRPG 195
             +IV      K  ILR G
Sbjct: 384 DDSIVQ-SINGKPMILRLG 401


>gi|90426026|ref|YP_534396.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris BisB18]
 gi|90108040|gb|ABD90077.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris BisB18]
          Length = 785

 Score = 72.4 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 14/158 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +   + L  A + L  G  +A+      GL       D+ +  A+  L   K+RPA  P
Sbjct: 210 RVAADDPLTAAVDALRQGKILALK-----GLGGFHLACDAGSEAAVDALRARKRRPA-KP 263

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                +D+  +++    D     L     P    ++L       +      N     F +
Sbjct: 264 FALMAADLEAIRRFCRADAQEAALL--LSPAAPIVLLPWRHHEGLAAAVAPNQSLLGFML 321

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
           P       L+  +G  L + S N SG+  + +      
Sbjct: 322 PTTPLHHLLLNEFGGALVMTSGNVSGEPQVIDNADAQR 359


>gi|269104829|ref|ZP_06157525.1| [NiFe] hydrogenase metallocenter assembly protein HypF
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161469|gb|EEZ39966.1| [NiFe] hydrogenase metallocenter assembly protein HypF
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 786

 Score = 72.4 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+    + + AG  +A+      GL       D+ +  A+ RL + K RP   PL   
Sbjct: 206 EQAIESLAKQILAGGVVALK-----GLGGFHLICDASDNVAVERLRQYKHRP-KKPLAIM 259

Query: 64  VSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V  +S  +  A   D     L +   P    ++L     + + P    N+      +P  
Sbjct: 260 VQSLSDARVFAQGCDKEWQTLDEQKRP---IVLLKKNRESILAPNLAPNVPYLGIMLPYT 316

Query: 123 FTKKLIET--------YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L+            H L + SANRSG    T  + ++ +    E+  I+
Sbjct: 317 PLHFLLFAKLAELKPHTPHALVMTSANRSGLPIATCFEEVI-AQFGTELDGIL 368


>gi|289578795|ref|YP_003477422.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter
           italicus Ab9]
 gi|289528508|gb|ADD02860.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter
           italicus Ab9]
          Length = 751

 Score = 72.4 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 73/240 (30%), Gaps = 37/240 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            + ++ A   L  G  +AI      G+       ++ +  A+  L   K+R    P    
Sbjct: 202 EDEIKCAVAALKKGKIVAIK-----GIGGFHLAVNALDEKAVSNLRIRKER-YGKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + DI  V+++  V      L          +VL       +       L T    +P   
Sbjct: 256 MKDIKQVEEYCIVGEEEKKLL---LSQRRPIVLLKKKGEKLAKGVADGLDTLGVMLPYAP 312

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              L+ E    P+ + S N S +    + K  L   +     + +            IVN
Sbjct: 313 IHYLLMEEINFPIVMTSGNVSEEPLCKDNKEAL-EKLKDIADVFLLNNRD-------IVN 364

Query: 183 VQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HYA 231
            + +  V     G   I  ++RA       +    D      + G            HYA
Sbjct: 365 -RIDDSVTSFNGGAERI--IRRARGYAPQPILLKKDAKVNVLAVGGFYKNTFCLTKGHYA 421


>gi|290474488|ref|YP_003467368.1| hypothetical protein XBJ1_1450 [Xenorhabdus bovienii SS-2004]
 gi|289173801|emb|CBJ80583.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 259

 Score = 72.4 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 18/174 (10%)

Query: 13  RKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++A E L + G  I  PT+  Y +     +   + R +E K+R    P +     +  +K
Sbjct: 14  QEAVEILSNEGGMIVCPTKVGYIIMTS--DAQGLERKFEAKQRNRNKPGVVLCGSLEQLK 71

Query: 72  KHASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV--- 119
           + A ++P    L +  W     L  +L                 L      T+CF +   
Sbjct: 72  ELAQLNPEIEELYQKHWDADVLLGCILPWKEDAVARIPDDGSKALMMDGRGTSCFVIKFG 131

Query: 120 -PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
            P     K + E YG      SAN SG+ +   V   +   I +   LIID   
Sbjct: 132 KPGEILAKALWENYGKFSFASSANPSGKGNRGLV-ECIGERIEERADLIIDANH 184


>gi|218440604|ref|YP_002378933.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           7424]
 gi|218173332|gb|ACK72065.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           7424]
          Length = 780

 Score = 72.4 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 77/217 (35%), Gaps = 29/217 (13%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPA 56
           QI+   +S  +  A   +  G  +AI      GL       D+RN TA++ L + K+RP 
Sbjct: 199 QILETHESALMATA-TAIREGKIVAIK-----GLGGFHLVVDARNTTAVQELRKRKQRP- 251

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAK-LFWP------------GPLTLVL---DLLS 100
             P       ++++K+H  V P    L      P             PLT +    ++  
Sbjct: 252 DKPFAVMYPSLNLLKEHCLVTPTEEALLNSAECPIVLLKVLSSNFRSPLTPLYKGGNIRK 311

Query: 101 TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
             +I P    N       +P       L+   G P+   S N S +    +    L    
Sbjct: 312 EGEISPAVAPNNPYLGVMLPYTPLHHLLLAELGFPIVATSGNISDEPICIDELEALQKLN 371

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
                 +I        ++ +IV +   +++ + R  G
Sbjct: 372 QIADLFLIHNRPIFRPVDDSIVRMMGGREMVMRRARG 408


>gi|288550332|ref|ZP_05970011.2| [NiFe] hydrogenase maturation protein HypF [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315486|gb|EFC54424.1| [NiFe] hydrogenase maturation protein HypF [Enterobacter
           cancerogenus ATCC 35316]
          Length = 748

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 21/165 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL  A E L  G  +AI      GL       D+R+P AI  L   K+RPA  PL   
Sbjct: 197 EAALSAAVEMLKNGGIVAIK-----GLGGFHLACDARHPQAIATLRLRKRRPA-KPLAVM 250

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
                 +       P S+         P+ LV       D+       L T    +P   
Sbjct: 251 PPQADGL-------PDSIQTLLHSPAAPIVLV-PASWLPDLPDGIAPGLSTIGVMLPANP 302

Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            + L+      PL + S N SG+      +  L   +       +
Sbjct: 303 LQHLLMMDCQRPLVMTSGNLSGRPPAMTNQQAL-DELGDIADGFL 346


>gi|220905911|ref|YP_002481222.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           7425]
 gi|219862522|gb|ACL42861.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           7425]
          Length = 818

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      G     LA D+ + TA++ L + K R    P     
Sbjct: 220 DDVDAVCTLLQRGEIVAIK-----GMGGFHLACDATHETAVQTLRQRKHRD-HKPFALMA 273

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT---DIHPLSTANLKTACFRVP- 120
            D+ +++++  V+P    L +     P+ L+    +     +I      +  T  F +P 
Sbjct: 274 RDLEIIERYCWVNPQERELLESSA-APIVLLSKKAAQAQKWEIAHAVAPDRNTLGFMLPY 332

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 +++    P+ + S N S Q    +        +       +
Sbjct: 333 TPLHHLILKRMNRPIVLTSGNLSDQPQCIDNNEA-HQKLAGIADYFL 378


>gi|306817445|ref|ZP_07451190.1| hydrogenase maturation protein HypF [Mobiluncus mulieris ATCC
           35239]
 gi|307700491|ref|ZP_07637527.1| carbamoyltransferase HypF [Mobiluncus mulieris FB024-16]
 gi|304649886|gb|EFM47166.1| hydrogenase maturation protein HypF [Mobiluncus mulieris ATCC
           35239]
 gi|307614298|gb|EFN93531.1| carbamoyltransferase HypF [Mobiluncus mulieris FB024-16]
          Length = 872

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 12/143 (8%)

Query: 20  DAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
            +G  +A     V GL       D+ N TA+ RL   K R    PL   V+D +  +   
Sbjct: 243 RSGKIVA-----VKGLGGFHLLVDATNETAVSRLRRRKHRD-GKPLAVMVADFAAARALV 296

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
            +D     +A+L       +VL + +   I P     L      +        L+E  G 
Sbjct: 297 DIDTPENPIAQLLLSPAHPIVLAVRNGAAIAPSVAPGLDNLGVMLAYTPLHLLLLERVGR 356

Query: 134 PLAIPSANRSGQISITNVKHILS 156
           P+   S N S +         L 
Sbjct: 357 PVVATSGNLSSEPLCYTNADALR 379


>gi|119944969|ref|YP_942649.1| (NiFe) hydrogenase maturation protein HypF [Psychromonas ingrahamii
           37]
 gi|119863573|gb|ABM03050.1| (NiFe) hydrogenase maturation protein HypF [Psychromonas ingrahamii
           37]
          Length = 762

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 15/195 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGL-----AVDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL  A   L AG  +A     V GL      VD+ N  A+ RL   K+RP   P    
Sbjct: 201 EAALTLAINALQAGKILA-----VKGLTGFHIMVDACNHQAVLRLRARKQRPE-KPFALM 254

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
              +SMVK    +      L       P+ L+ +  S   + P    N       +    
Sbjct: 255 YPQLSMVKSDCLLGE-QEKLLLCSAIAPIVLLENKHSNLSLSPAIAPNNPYLGVMLAYTP 313

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GLESTIV 181
             + +      PL + SANRSG+    + +  L   + + +   +        GL+ +IV
Sbjct: 314 LHQLICRAINKPLVVTSANRSGEPVCCDNEQAL-EQLSQLVDGFVMHDREIYQGLDDSIV 372

Query: 182 NVQCEKKVRILRPGG 196
                + + + R  G
Sbjct: 373 KFVNHEPMLLRRARG 387


>gi|167624190|ref|YP_001674484.1| (NiFe) hydrogenase maturation protein HypF [Shewanella halifaxensis
           HAW-EB4]
 gi|167354212|gb|ABZ76825.1| (NiFe) hydrogenase maturation protein HypF [Shewanella halifaxensis
           HAW-EB4]
          Length = 795

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 17/169 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL  A   L  G  +AI      G+       D+ N  ++  L + K RPA  P    
Sbjct: 207 ETALEDAINSLIEGKILAIK-----GIGGFHLVCDATNNQSVELLRQRKNRPA-KPFAVM 260

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST---TDIHPLSTANLKTACFRVP 120
           V +I   K+  + +     +       P+TL+  + +      +  L    +      +P
Sbjct: 261 VENIDAAKRLVTGNTAEWQVLSSA-ERPITLMRKIDAHDVEPSLSDLVAPQIDRLGIFLP 319

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                + L+     PL + SAN SG+  IT     ++  +   I  I+D
Sbjct: 320 YTPLHQLLLNGVKRPLVMTSANLSGEPIIT-DSVAINCKLANVIDNILD 367


>gi|227876486|ref|ZP_03994598.1| hydrogenase maturation protein [Mobiluncus mulieris ATCC 35243]
 gi|269976053|ref|ZP_06183057.1| [NiFe] hydrogenase maturation protein HypF [Mobiluncus mulieris
           28-1]
 gi|227843027|gb|EEJ53224.1| hydrogenase maturation protein [Mobiluncus mulieris ATCC 35243]
 gi|269935881|gb|EEZ92411.1| [NiFe] hydrogenase maturation protein HypF [Mobiluncus mulieris
           28-1]
          Length = 872

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 12/143 (8%)

Query: 20  DAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
            +G  +A     V GL       D+ N TA+ RL   K R    PL   V+D +  +   
Sbjct: 243 RSGKIVA-----VKGLGGFHLLVDATNETAVSRLRRRKHRD-GKPLAVMVADFAAARALV 296

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
            +D     +A+L       +VL +     I P     L      +        L+E  G 
Sbjct: 297 DIDTPENPIAQLLLSPAHPIVLAVRHGAAIAPSVAPGLDNLGVMLAYTPLHLLLLERVGR 356

Query: 134 PLAIPSANRSGQISITNVKHILS 156
           P+   S N S +         L 
Sbjct: 357 PVVATSGNLSSEPLCYTNADALR 379


>gi|322420599|ref|YP_004199822.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M18]
 gi|320126986|gb|ADW14546.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M18]
          Length = 758

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 18/195 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + L +  + L  GL +A     V     Y LAVD+ N  A+  L   KKR    P     
Sbjct: 201 DPLEQTLKALGEGLVVA-----VKGVGGYHLAVDACNEAAVALLRRRKKRDE-KPFAMLA 254

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +D+  V+++A    L   L       P+ L++  L  T I  L         F +P    
Sbjct: 255 ADLDAVRRYAECSELEGRLLAGV-ERPI-LLMRKLPKTPISELVAPGNGWYGFMLPGNPL 312

Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIV 181
           +  LI     PL + S N S +         L   +     L +  D  I     +S ++
Sbjct: 313 QHLLIRNAEGPLVMTSGNLSDEPIAYRDDEALR-MLSGIADLFLSHDREIHTRTDDS-VI 370

Query: 182 NVQCEKKVRILRPGG 196
            +   + + + R  G
Sbjct: 371 RLYRGEPLFLRRSRG 385


>gi|160879881|ref|YP_001558849.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           phytofermentans ISDg]
 gi|160428547|gb|ABX42110.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           phytofermentans ISDg]
          Length = 792

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 14/157 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            + +  AL +A E + +G  +A     V G+             A+  L  +K R    P
Sbjct: 234 RLINQQALHQAAEIIKSGGILA-----VKGIGGYHFVCSPFKEEAVVNLRRLKGR-EEKP 287

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                  I  ++++ +V      L          +VL  +    + P +          +
Sbjct: 288 FAVMFETIDSIREYCNVSEEEEKLL---MTKARPIVLLYMHRDVMAPSTNKGSIYCGTFL 344

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
           P    + L+     PL + S N SG   I   + +LS
Sbjct: 345 PYTPLQILLTRDCGPLIMTSGNISGSPIIREDEKMLS 381


>gi|297545016|ref|YP_003677318.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842791|gb|ADH61307.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 751

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 73/240 (30%), Gaps = 37/240 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            + ++ A   L  G  +AI      G+       ++ +  A+  L   K+R    P    
Sbjct: 202 EDEIKCAAAALKKGKIVAIK-----GIGGFHLAVNALDEKAVSSLRIRKER-YGKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + DI  V+++  V      L          +VL       +       L T    +P   
Sbjct: 256 MKDIKQVEEYCIVGEEEKKLL---LSQRRPIVLLKKKGEKLAKGVADGLDTLGVMLPYAP 312

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
              L+ E    P+ + S N S +    + K  L   +     + +            IVN
Sbjct: 313 IHYLLMEEINFPIVMTSGNVSEEPLCKDNKEAL-EKLKDIADVFLLNNRD-------IVN 364

Query: 183 VQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HYA 231
            + +  V     G   I  ++RA       +    D      + G            HYA
Sbjct: 365 -RIDDSVTSFNGGAERI--IRRARGYAPQPILLKKDAKVNVLAVGGFYKNTFCLTKGHYA 421


>gi|219847410|ref|YP_002461843.1| (NiFe) hydrogenase maturation protein HypF [Chloroflexus aggregans
           DSM 9485]
 gi|219541669|gb|ACL23407.1| (NiFe) hydrogenase maturation protein HypF [Chloroflexus aggregans
           DSM 9485]
          Length = 778

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 23/176 (13%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
           + + + LR A   L  G  +A     V     Y LA  + +  A+RRL + K+R A  PL
Sbjct: 205 LAEPDPLRAAAVALAQGQIVA-----VKGLGGYHLACAADDEAAVRRLRQRKQREA-RPL 258

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                D+++  +   +DP++  L     P    +++   S   + P     ++T    +P
Sbjct: 259 ALMTRDLTVAARLCVIDPVAQTLLTG--PAHPIVLMPRRSDAPVAPSVAPGMRTLGVMLP 316

Query: 121 ----CGFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                            P     + + S N S +    +        +       +
Sbjct: 317 YTPLHHLLLAEYAAVVGPTREAVIVLTSGNLSDEPIAYHDDDA-QQRLGPIADAFL 371


>gi|26553519|ref|NP_757453.1| translation factor [Mycoplasma penetrans HF-2]
 gi|26453525|dbj|BAC43857.1| predicted translation factor [Mycoplasma penetrans HF-2]
          Length = 213

 Score = 72.0 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 70/190 (36%), Gaps = 50/190 (26%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLI----------CHVSDISMVKKHASVDP 78
           T+TV GL                       PLI            +  +S + +   V+ 
Sbjct: 59  TDTVSGL------------------LSLNKPLIYKIKKRDKNKKLIRFVSNLDQIPEVNE 100

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAI 137
               LA  FWPG LTL+    S                +R+P   F   LI+  G PL  
Sbjct: 101 TFKKLASKFWPGKLTLIYKKES----------------YRMPDDKFILNLIDKTG-PLYS 143

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            SAN SG   ITN+     S    +  +I I+G   +    STI ++       + R G 
Sbjct: 144 SSANLSGNPPITNIIDAFESFNKYKSDIIFIEGDYYQNNQPSTIYDIDTN---TLKREGE 200

Query: 197 LEIETLKRAI 206
           ++ E +K+ I
Sbjct: 201 IKYEWIKKTI 210


>gi|134099619|ref|YP_001105280.1| [NiFe] hydrogenase maturation protein HypF [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291005475|ref|ZP_06563448.1| [NiFe] hydrogenase maturation protein HypF [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133912242|emb|CAM02355.1| [NiFe] hydrogenase maturation protein HypF [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 746

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 13/200 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +A   L  G  +A     V GL       D+ +  A   L + K R    P    V
Sbjct: 196 DPVEEAAAVLARGEVLA-----VKGLGGYHLAVDATDEDAALALRKRKLR-EDKPFAVMV 249

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           + +   ++  ++D     L       P+ L+     T  I P            +P    
Sbjct: 250 ATVDHARELVTLDDTEAELLTSRR-RPIVLLRLRSGTGPIAPAVAPGNPRLGLMLPYTPL 308

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L+     P+ + S N S +         L          +       +  + ++V  
Sbjct: 309 HHLLLRRCATPIVLTSGNVSDEPIAHQDDDALRRLSGIADAFLTHDRPIHVRTDDSVVRA 368

Query: 184 QCEKKVRILRPGGLEIETLK 203
              + + + R  G   E L 
Sbjct: 369 FRGRPMLVRRSRGYAPEPLA 388


>gi|118581187|ref|YP_902437.1| (NiFe) hydrogenase maturation protein HypF [Pelobacter propionicus
           DSM 2379]
 gi|118503897|gb|ABL00380.1| (NiFe) hydrogenase maturation protein HypF [Pelobacter propionicus
           DSM 2379]
          Length = 780

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 18/195 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + L  A   L  G  +A     V     Y LAVD+ N  A+  L   K+R    P     
Sbjct: 212 DVLLAAVNLLQRGGVLA-----VKGIGGYHLAVDACNEEAVANLRRRKQRDE-KPFAIMA 265

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D++ +   A        L     P    ++L     T I  L   +       +P    
Sbjct: 266 PDLARIDSFARCSETEQRLLGG--PERPIVLLPKREATPIASLVAPDNGYFGVMLPSTPL 323

Query: 125 KKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES--TIV 181
             L+       L + S N+S +             +     L +     +I + S  +I+
Sbjct: 324 HHLLLRNNFIALVMTSGNQSDEPIAYRDSEA-REQLAGIADLFL-AHDREIHVRSDDSII 381

Query: 182 NVQCEKKVRILRPGG 196
            V     + + R  G
Sbjct: 382 RVFHGSPLFLRRSRG 396


>gi|225025826|ref|ZP_03715018.1| hypothetical protein EUBHAL_00051 [Eubacterium hallii DSM 3353]
 gi|224956843|gb|EEG38052.1| hypothetical protein EUBHAL_00051 [Eubacterium hallii DSM 3353]
          Length = 809

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 73/200 (36%), Gaps = 21/200 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++A+R   + +  G  +A     V G+       D+     + RL + KKRP M P    
Sbjct: 206 ADAIRYTRKVISEGGIVA-----VKGIGGFHLCCDAAKEETVARLRQRKKRP-MKPFAVM 259

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + D+ +V++    +P    +       P+ ++L       +      +       +P   
Sbjct: 260 MKDLDVVRRECETEPHLEEILDGH-QKPI-ILLPKKEGGTLCESVAPDNPKIGVMLPYAP 317

Query: 124 TKKLI------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGL 176
            + L+            L + SAN SG     + +  L+  +     +I+      ++  
Sbjct: 318 VQLLLFDYQDETKVSDCLVMTSANTSGAPICRDDEDALNE-LSGLCDVILSHDRKIRLRA 376

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           + T+++    +   I R  G
Sbjct: 377 DDTVMDFYRGEPYMIRRSRG 396


>gi|291523009|emb|CBK81302.1| [NiFe] hydrogenase maturation protein HypF [Coprococcus catus GD/7]
          Length = 793

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 21/200 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+    + + +G   AI      G+       D+ N TA+ RL E+K+RP M P     
Sbjct: 200 EAITYTRKVIASGGIAAIK-----GIGGFHLCCDATNETAVARLRELKRRP-MKPFAVMA 253

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL-LSTTDIHPLSTANLKTACFRVPCGF 123
            ++S V+K   V  +   +       P+ L+  L  + + I P            +P   
Sbjct: 254 RNMSAVRKECQVTEVQEEVLDGH-QKPILLLERLDKADSQICPSVAPGNPKIGVMLPYAP 312

Query: 124 TKKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGL 176
            + LI  Y      P  L + S N SG     +    ++  +      ++      +I  
Sbjct: 313 VQLLIFDYDDGIQMPDYLVMTSGNTSGAPICRDDNDAIAE-LSHLCDCMLSHNRKIRIRA 371

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           + ++++   ++   I R  G
Sbjct: 372 DDSVMDYYKDEPYMIRRSRG 391


>gi|152993244|ref|YP_001358965.1| hydrogenase maturation protein HypF [Sulfurovum sp. NBC37-1]
 gi|151425105|dbj|BAF72608.1| hydrogenase maturation protein HypF [Sulfurovum sp. NBC37-1]
          Length = 740

 Score = 71.6 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 82/207 (39%), Gaps = 18/207 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +S+  S  +  A + L  G  +A     V G+       D+ N  A+ +L E K+RP+  
Sbjct: 196 LSVKRSEIIDMASQLLLDGNILA-----VKGVGGYHLMCDATNEEAVAKLRERKRRPS-K 249

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC-F 117
           P    V ++ M  + A +      L +     P+ L+     T + H     N+     F
Sbjct: 250 PFAVMVKNMDMAHQLAVISSKEEALLESK-ERPIVLLNAKRQTLNAH--VAPNISRIGLF 306

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI-GL 176
                    L+ T   PL   SAN + +   T+ + +    +      ++D     + G 
Sbjct: 307 LPYTPLHLLLLHTLNRPLVATSANVTDEPICTDRESL--EKLSDVYDYVLDHNRKIVNGC 364

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
           + ++V V  E+KV + R  G    ++K
Sbjct: 365 DDSVVMVVREQKVTLRRARGYAPSSVK 391


>gi|226325558|ref|ZP_03801076.1| hypothetical protein COPCOM_03363 [Coprococcus comes ATCC 27758]
 gi|225206041|gb|EEG88395.1| hypothetical protein COPCOM_03363 [Coprococcus comes ATCC 27758]
          Length = 89

 Score = 71.6 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 1  MQ-IMSITDSNALRK-----ACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRR 47
          M+ I+   D N + +     A   L  G  +A PTETVYGL  ++ +  A +R
Sbjct: 4  METIIKKIDRNQIDQVIMEEAGSILKNGGLVAFPTETVYGLGANALDEEAAKR 56


>gi|146303695|ref|YP_001191011.1| (NiFe) hydrogenase maturation protein HypF [Metallosphaera sedula
           DSM 5348]
 gi|145701945|gb|ABP95087.1| (NiFe) hydrogenase maturation protein HypF [Metallosphaera sedula
           DSM 5348]
          Length = 743

 Score = 71.6 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 20/197 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + + ++ A + L  G  IAI      G+       D  +   +  L   K RP+  P   
Sbjct: 199 EGDPIKLAGKLLTEGKIIAIK-----GIGGFHIACDPFDDDVVLTLRARKGRPS-KPFAV 252

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---V 119
                 ++   A ++PL   + +   P    ++L     + I    +  L    F     
Sbjct: 253 MSISSDIISNFAEINPLEKDILES--PERPIVLLKKREDSPISKHVSPGLDREGFFLYYT 310

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178
           P  +   L E  G+ L + SANR G    T  +  +   +   +  ++      +  ++ 
Sbjct: 311 PLHYML-LSEVKGNTLVMTSANRHGYPMCTT-ESCVKEKLSGIVDYMLYHDREIVNRVDD 368

Query: 179 TIVNVQCEKKVRILRPG 195
           +++      ++ ILR G
Sbjct: 369 SVIKFAGN-RLHILRRG 384


>gi|289523009|ref|ZP_06439863.1| [NiFe] hydrogenase maturation protein HypF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503552|gb|EFD24716.1| [NiFe] hydrogenase maturation protein HypF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 756

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 68/197 (34%), Gaps = 15/197 (7%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
             + +A+  A ++L  G  +AI      G+       D RN  A++ L   KKRP   P 
Sbjct: 202 AINDDAVLLASKYLREGKILAIK-----GIGGYHLACDPRNDRAVKELRIRKKRP-DKPF 255

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                D+   K    ++  ++ L     P    +V       ++      N+ T    +P
Sbjct: 256 ALMARDLEAAKSIVLINEKAMKLL--LSPRRPIVVCPKYKDDNLSRYVAPNIDTYGIMLP 313

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK-IGLEST 179
                 L+      L + SAN S +  +   +  L   +       +       + ++ +
Sbjct: 314 YTPIHHLLLEEQDLLIMTSANISDEPLVAGNREALK-KLGPIADYFLMHNRDIYVKIDDS 372

Query: 180 IVNVQCEKKVRILRPGG 196
           ++ +     +   R  G
Sbjct: 373 VIAMAGMTPIFTRRARG 389


>gi|189219808|ref|YP_001940449.1| [NiFe] hydrogenase metallocenter assembly protein HypF
           [Methylacidiphilum infernorum V4]
 gi|189186666|gb|ACD83851.1| [NiFe] hydrogenase metallocenter assembly protein HypF
           [Methylacidiphilum infernorum V4]
          Length = 790

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+++    +  G  +A     V G+       D+ NP AI +L E K+R A  P    
Sbjct: 211 EEAIKEGAWAIAEGQIVA-----VKGIGGYLLMADALNPAAILKLRERKRR-ASKPFALM 264

Query: 64  VSDISMVKKHASVDPLSLHLAKLFW----PGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
            +DI  V+K   +        +  W      P+ ++    + + I  L      T    +
Sbjct: 265 FNDIQEVEKEVYLSEK-----EKSWLISRQKPILILQRKKTQSPIADLVAPAQDTLGIML 319

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           P       L++    PL   SAN SG   +   + +L   +      ++
Sbjct: 320 PYTPLHILLLDYLKRPLVATSANISGLPIVFE-EGMLFLKLGHVFDKVL 367


>gi|269797704|ref|YP_003311604.1| (NiFe) hydrogenase maturation protein HypF [Veillonella parvula DSM
           2008]
 gi|269094333|gb|ACZ24324.1| (NiFe) hydrogenase maturation protein HypF [Veillonella parvula DSM
           2008]
          Length = 759

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 9/190 (4%)

Query: 17  EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           E ++ G  IAI  + V  Y L  D+RN  A++RL + K RP   PL   V  + M  +  
Sbjct: 215 ELINEGSIIAI--KGVGGYHLVCDARNDAAVQRLRKRKNRP-HKPLAIMVGTLDMAIELV 271

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            ++ + L +       P+ L+     S+  +      + +     +P     +++  +  
Sbjct: 272 HINDVELDILTG-MERPIVLLEKNHNSSVHLSSYVAPDNRMLGVMLPYSPMHEVLLPFDA 330

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192
              + S N+SG   + N     +  + +     +         L+ ++V V   K   I 
Sbjct: 331 AWIMTSGNKSGDSVLYNDDQAFNE-LGEVADYFLVHNREIYAPLDDSVVVVINNKPRFIR 389

Query: 193 RPGGLEIETL 202
           R  G   E +
Sbjct: 390 RSRGYVPEPI 399


>gi|253827255|ref|ZP_04870140.1| transcriptional regulatory protein HypF [Helicobacter canadensis
           MIT 98-5491]
 gi|253510661|gb|EES89320.1| transcriptional regulatory protein HypF [Helicobacter canadensis
           MIT 98-5491]
          Length = 775

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 14/162 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ A + L  G  +A+          Y L  D+ N  +I+ L E K RP   P      +
Sbjct: 221 IKSALKALKEGKILAL-----KGIGGYALICDATNANSIKALRERKNRP-KKPFALMCKN 274

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           I M K +A ++  ++ +       P+ L            L   NL T    +P      
Sbjct: 275 IQMAKNYAYLNSQAIAMLNSSI-SPIVLSYSKTKANLPLSLIAPNLSTLGIILPYSGLHH 333

Query: 127 LIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           L+      PL   SAN SG+  I +   ++   +      I+
Sbjct: 334 LLFHSIDFPLVFTSANISGEPIIKDCYSVI-QKLQNVCDGIL 374


>gi|224417916|ref|ZP_03655922.1| Hydrogenase maturation protein HypF [Helicobacter canadensis MIT
           98-5491]
 gi|313141457|ref|ZP_07803650.1| hydrogenase maturation protein HypF [Helicobacter canadensis MIT
           98-5491]
 gi|313130488|gb|EFR48105.1| hydrogenase maturation protein HypF [Helicobacter canadensis MIT
           98-5491]
          Length = 770

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 14/162 (8%)

Query: 12  LRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           ++ A + L  G  +A+          Y L  D+ N  +I+ L E K RP   P      +
Sbjct: 216 IKSALKALKEGKILAL-----KGIGGYALICDATNANSIKALRERKNRP-KKPFALMCKN 269

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           I M K +A ++  ++ +       P+ L            L   NL T    +P      
Sbjct: 270 IQMAKNYAYLNSQAIAMLNSSI-SPIVLSYSKTKANLPLSLIAPNLSTLGIILPYSGLHH 328

Query: 127 LIETY-GHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           L+      PL   SAN SG+  I +   ++   +      I+
Sbjct: 329 LLFHSIDFPLVFTSANISGEPIIKDCYSVI-QKLQNVCDGIL 369


>gi|186680891|ref|YP_001864087.1| (NiFe) hydrogenase maturation protein HypF [Nostoc punctiforme PCC
           73102]
 gi|186463343|gb|ACC79144.1| (NiFe) hydrogenase maturation protein HypF [Nostoc punctiforme PCC
           73102]
          Length = 781

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 15/164 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGL-----AVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      GL     A D+   T +++L + KKR    P     
Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GLSGIHLACDATQETVVQKLRQRKKR-YHKPFALMA 258

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            DI +++++ +V+     L       P+ ++L  +S   + P   +   T  F +P    
Sbjct: 259 RDIEIIEQYCTVNAKEKELLTSSA-API-VLLQAISKKLVAPSVASGQNTLGFMLPYTPL 316

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              ++     P+ + S N + +    +        +       +
Sbjct: 317 HHLILRRMNRPIVLTSGNLADEPQCIDNDEA-REKLGTIADYFL 359


>gi|294155509|ref|YP_003559893.1| SUA5-like translation suppressor [Mycoplasma crocodyli MP145]
 gi|291600088|gb|ADE19584.1| SUA5-like translation suppressor [Mycoplasma crocodyli MP145]
          Length = 160

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 23/141 (16%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+TV G+     N   +  +Y +KKRP    ++     +S ++K    +  +   A  +W
Sbjct: 11  TDTVSGIGG-PINSETLETIYFLKKRPFDKKIMIVAGSLSQIRKFKEWNKEAEAFASKYW 69

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PG  +++++                   FR+P     +       P+ + SAN SGQ  +
Sbjct: 70  PGSTSIIINGQ----------------GFRIPKSKKMQKFLIKHGPMYLTSANISGQSPL 113

Query: 149 T------NVKHILSSSICKEI 163
           T        K +       ++
Sbjct: 114 TLKGAKKTFKEVSKFYFFGKL 134


>gi|14209676|gb|AAK56850.1|AF292554_2 [NiFe] hydrogenase maturation protein HypF [Thiocapsa
           roseopersicina]
          Length = 806

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 27/206 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+  A   L  G  +AI      G+       D+ NP A+  L   K+R    PL   
Sbjct: 214 QDAIAAASGLLAEGRILAIK-----GIGGFHLACDATNPDAVAELRRRKRR-YAKPLALM 267

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL------------LSTTDIHPLSTAN 111
             D+ +++ +  V             GP   +L L                 + P     
Sbjct: 268 ARDLDVIRGYCRVPGRDAEQLAELLSGPGAPILLLDRIRSDGAEQGGDPRRPLAPDVAPG 327

Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             T    +P       L+E +  PL + S N S +    +    L   + +   +++   
Sbjct: 328 QMTLGVMLPYSPIHHLLLEDWDRPLVMTSGNLSEEPQCIDNADALG-RLGQLADVLLLHD 386

Query: 171 ISKIG-LESTIVNVQCEKKVRILRPG 195
            + +  ++ ++V V      R+LR  
Sbjct: 387 RAILNRVDDSVVRVM-AGTPRLLRRA 411


>gi|218260464|ref|ZP_03475762.1| hypothetical protein PRABACTJOHN_01425 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224518|gb|EEC97168.1| hypothetical protein PRABACTJOHN_01425 [Parabacteroides johnsonii
           DSM 18315]
          Length = 763

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 19/197 (9%)

Query: 21  AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            G  IA  T+   G+       D+RN  A+ RL E+K+R    P      DI  ++++ S
Sbjct: 220 EGEVIA--TK---GIGGYHLICDARNEKAVSRLREVKQRD-GKPFAVLFRDIENIRRYVS 273

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHP 134
           ++  +   + L W  P+ L+  L +   + P     ++T    +P         E    P
Sbjct: 274 LNE-AEEESLLSWRRPIVLLKQLRA---LAPSVNPGMETLGCMLPYMPIHSDWFEQLDTP 329

Query: 135 L-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192
           +  + S N S        +      +  ++PL++         ++ +++ +   +   I 
Sbjct: 330 VLVMTSGNISECPIAITPEEA-EKQLAGKVPLLLHHNREIHNRVDDSVLQICGGQPCLIR 388

Query: 193 RPGGLEIETLKRAISVE 209
           R  G   E     I VE
Sbjct: 389 RSRGYVPEPFFADIPVE 405


>gi|315923948|ref|ZP_07920176.1| hydrogenase maturation protein HypF [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622788|gb|EFV02741.1| hydrogenase maturation protein HypF [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 771

 Score = 71.2 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 21/204 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            + D  A+  A   +  G  +A     V G+       D+ +  A+ RL   K RP   P
Sbjct: 195 DLKDRLAITAARRMIAGGGVVA-----VKGIGGFHLCCDATDEAAVMRLRRHKHRP-TKP 248

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D +   +   + P+   +       P+ L L   ++           K     +
Sbjct: 249 FAVMARDEAAADRECVIGPVQRAVLTGH-QKPIAL-LPKKASGRAADAVAPGAKALGLML 306

Query: 120 PCGFTKKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGIS 172
           P    + L+ TY      P  L + S N SG     N    +   +     LI+ +    
Sbjct: 307 PYAPIQLLLFTYDDDVSVPDLLVMTSGNVSGAPICRNDAEAVQE-LGNLCDLILSNDRPI 365

Query: 173 KIGLESTIVNVQCEKKVRILRPGG 196
           +   + ++++   +    + R  G
Sbjct: 366 RTRADDSVMDFLEDAPYMVRRSRG 389


>gi|307265657|ref|ZP_07547210.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919301|gb|EFN49522.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 751

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 74/241 (30%), Gaps = 37/241 (15%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62
           + + ++   + L  G  +AI      G+       ++ +  A+  L   KKR    P   
Sbjct: 201 EEDEIKCVADALKRGKIVAIK-----GIGGFHLAVNALSDEAVFTLRSRKKR-YGKPFAV 254

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + DI+ V+K+  V      L          +VL       +       L T    +P  
Sbjct: 255 MMKDINQVEKYCFVSDEEKKLL---LSQRRPIVLLKKKGEKLAKGVADGLDTLGVMLPYA 311

Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
               L+ +    P+ + S N S +    + +  L   +       +            IV
Sbjct: 312 PIHYLLMDQIDFPIVMTSGNVSEEPICKDNEEAL-EKLKDIADAFLLNNRD-------IV 363

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISV---ELEYCVDETSTPQSPGMLKS--------HY 230
           N + +  V     G   I  ++RA       +    D      + G            HY
Sbjct: 364 N-RIDDSVTSFNGGAERI--IRRARGYAPQPILLKKDAKVNVLAVGGFYKNTFCITHGHY 420

Query: 231 A 231
           A
Sbjct: 421 A 421


>gi|312880696|ref|ZP_07740496.1| (NiFe) hydrogenase maturation protein HypF [Aminomonas paucivorans
           DSM 12260]
 gi|310783987|gb|EFQ24385.1| (NiFe) hydrogenase maturation protein HypF [Aminomonas paucivorans
           DSM 12260]
          Length = 754

 Score = 70.9 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 17/202 (8%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  A+R+A E L  G  +A+      GL       D      +  L E K+RP   P   
Sbjct: 201 EDEAIRQAREALTGGRILALK-----GLGGFHLACDPTRDAPVALLRERKRRP-HKPFAV 254

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V D+    +   + P S  L     P    ++  +     + PL      T    +P  
Sbjct: 255 LVPDLEAAGRLVRLTPTSRDLLAS--PRGPIVLCPVREDGPLSPLVAPGQDTLGVFLPTT 312

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILS--SSICKEIPLIIDGGISKIGLESTI 180
               L+      L + S NR  +      +  L+          L      +   ++ ++
Sbjct: 313 PLHHLVAEGFPALLMTSGNRGEEPLAAGNREALATLRDFADRFLLHDRDIHNP--VDDSV 370

Query: 181 VNVQCEKKVRILRPGGLEIETL 202
           V     + + + R  G   E L
Sbjct: 371 VAPAGRRTILLRRSRGYVPEPL 392


>gi|295812107|gb|ADG34828.1| HypF [Aphanizomenon sp. 10E6]
          Length = 783

 Score = 70.9 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 72/193 (37%), Gaps = 17/193 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      GL       ++    A+ +L   K R    PL    
Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GLGGFHLACNATLENAVSKLRNRKIR-CHKPLALMA 258

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            DI+++ ++  V+ L   L       P+ ++L++   + + P       T  F +P    
Sbjct: 259 RDINIISEYCYVNDLEKELLTNSA-API-VLLNIKDQSKLAPSIAPGQNTLGFMLPYTPL 316

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182
              ++     P+ + S N S Q    + +      + K     +      +  ++ ++V 
Sbjct: 317 HHLILRRMKVPIVLTSGNISDQPQCIDNEDA-KDKLSKIADYFLLHNRDIVNRVDDSVVR 375

Query: 183 VQCEKKVRILRPG 195
           V  + +++ LR  
Sbjct: 376 VI-DNQIQTLRRA 387


>gi|283835559|ref|ZP_06355300.1| [NiFe] hydrogenase maturation protein HypF [Citrobacter youngae
           ATCC 29220]
 gi|291068769|gb|EFE06878.1| [NiFe] hydrogenase maturation protein HypF [Citrobacter youngae
           ATCC 29220]
          Length = 746

 Score = 70.9 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 20/155 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A   L AG  +A     V G+       D+RN +A+  L   K RPA  PL   
Sbjct: 200 EEALQAAVALLKAGGIVA-----VKGIGGFHLVCDARNDSAVALLRLRKHRPA-KPLAVM 253

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +     +         +  L     P    +++       +       L      +P   
Sbjct: 254 LPADDGLS------EAACRLLN--TPAAPIVLVQKRDVAALSEGIAPGLTEVGVMLPANP 305

Query: 124 TKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157
            +  L++    PL + S N SG+         L  
Sbjct: 306 LQHLLLQEMNCPLVMTSGNLSGRPPAITNAQALED 340


>gi|291300925|ref|YP_003512203.1| (NiFe) hydrogenase maturation protein HypF [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570145|gb|ADD43110.1| (NiFe) hydrogenase maturation protein HypF [Stackebrandtia
           nassauensis DSM 44728]
          Length = 764

 Score = 70.9 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 18/196 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL +A   L+ G  IA+      G+       D+ + TA+RRL  +K RP   PL   
Sbjct: 207 EAALSQAIAVLETGGLIAMK-----GVGGYQLVTDAGDDTAVRRLRHVKNRP-GKPLAVM 260

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           V  +   ++ A +D     L     P    +V        +  L    L      +P   
Sbjct: 261 VGTLDRARRLADLDTDEAKLLTA--PAAPIVVCHSPHLETLSSLVAPRLSHVGVFLPYSP 318

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180
               L+     PL + S N  G+  I          +   +  ++  D  I +   +S +
Sbjct: 319 LHHLLLAALDRPLVVTSGNLGGEPIIIGD-EAARDRLGPMVDGVLGHDRPIRERHDDS-V 376

Query: 181 VNVQCEKKVRILRPGG 196
           V V   + + + R  G
Sbjct: 377 VRVVDGETLTLRRARG 392


>gi|256383695|gb|ACU78265.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384526|gb|ACU79095.1| conserved hypothetical protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455873|gb|ADH22108.1| conserved hypothetical protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 166

 Score = 70.9 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 21/174 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E L     I +PT+T+YGL+        I R+ ++K      PLI  +S++  + 
Sbjct: 7   INKAIELLKNNQIIILPTDTIYGLSAIYSLENQI-RVNQVKNADITKPLIVLISNLDQLN 65

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130
               +  L+     L    P T++    S+            +   R V     K++I  
Sbjct: 66  DL-EITDLTDKDY-LLNDEPTTVIFKTKSS------------SIAIRLVKREDIKQIINK 111

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVN 182
            G P+   S N      +     +++    K I L  D         + S+I+ 
Sbjct: 112 TG-PIISTSVNLHNFKPLIKENDLIN--FNKNIELFFDTQLNNKPSKIYSSIIK 162


>gi|226330252|ref|ZP_03805770.1| hypothetical protein PROPEN_04165 [Proteus penneri ATCC 35198]
 gi|225201047|gb|EEG83401.1| hypothetical protein PROPEN_04165 [Proteus penneri ATCC 35198]
          Length = 95

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 109 TANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               KT   RVP       L+E  G PL   S    G     +    +   + K++ L+I
Sbjct: 2   NDKRKTIGLRVPSNPIALALLENIGEPLMSTSLILPGNDFAESDPEEIEDLLSKQVDLVI 61

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEI 199
            GG       +T++++  +  V I+R G  +I
Sbjct: 62  HGGYLGQ-KPTTVIDLTEDTPV-IVREGTGDI 91


>gi|315638678|ref|ZP_07893852.1| hydrogenase maturation protein HypF [Campylobacter upsaliensis
           JV21]
 gi|315481302|gb|EFU71932.1| hydrogenase maturation protein HypF [Campylobacter upsaliensis
           JV21]
          Length = 727

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A +   + L  G  IAI      GL       D+ N  A++ L   K RP   P     
Sbjct: 202 EAFKLCAKLLKEGKIIAIK-----GLGGFHLMCDALNENALKALRVRKNRPL-KPFALMC 255

Query: 65  SDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
            ++   +  A +D    +L +    P      + LL      PL   N+      +    
Sbjct: 256 KNLEEAQNLAYIDENEANLLESRVAP------IVLLKAKKNFPLIAPNVDKIGIFLAYTP 309

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
               L E +   L   SAN SG+  I   K++L   +       +D
Sbjct: 310 LHLLLFEYFDGSLVATSANLSGESIIYEEKNLL-QKLGGVFDYYLD 354


>gi|57242241|ref|ZP_00370180.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter
           upsaliensis RM3195]
 gi|57016921|gb|EAL53703.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter
           upsaliensis RM3195]
          Length = 727

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 20/166 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A +   + L  G  IAI      GL       D+ N  A++ L   K RP   P     
Sbjct: 202 EAFKLCAKLLKEGKIIAIK-----GLGGFHLMCDALNENALKALRVRKNRPL-KPFALMC 255

Query: 65  SDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
            ++   +  A +D    +L +    P      + LL      PL   N+      +    
Sbjct: 256 KNLEEAQNLAYIDENEANLLESRVAP------IVLLKAKKNFPLIAPNVDKIGIFLAYTP 309

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
               L E +   L   SAN SG+  I   K++L   +       +D
Sbjct: 310 LHLLLFEYFDGSLVATSANLSGESIIYEEKNLL-QKLGGVFDYYLD 354


>gi|315634610|ref|ZP_07889894.1| hydrogenase maturation protein HypF [Aggregatibacter segnis ATCC
           33393]
 gi|315476558|gb|EFU67306.1| hydrogenase maturation protein HypF [Aggregatibacter segnis ATCC
           33393]
          Length = 760

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 20/170 (11%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           I +   ++    FL  G  +A     V G+       D+    A++ L + K RP+  PL
Sbjct: 199 IDEKTPIKTTALFLQQGKIVA-----VKGIGGFHLACDATQADAVQLLRDRKHRPS-KPL 252

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFRV 119
              V D+S +K       L+    KL       +VL        +       L      +
Sbjct: 253 AVMVPDVSFLK------DLTEKEIKLLTSTAAPIVLLAKHKVPSLAEQIAPQLNEIGVML 306

Query: 120 PCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           P    +  L+     PL + SAN SGQ  + + +  +   +       + 
Sbjct: 307 PSNPLQHLLLREVNRPLVMTSANPSGQPPVLDNQSAV-EYLSDLADYFLC 355


>gi|147678031|ref|YP_001212246.1| hydrogenase maturation factor [Pelotomaculum thermopropionicum SI]
 gi|146274128|dbj|BAF59877.1| hydrogenase maturation factor [Pelotomaculum thermopropionicum SI]
          Length = 771

 Score = 70.5 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 19/167 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            N L+K  E +  G  +A+      GL       D+RN  AI  L + K R A  P    
Sbjct: 211 ENWLQKCWEIIQKGNILALK-----GLGGFHLTCDARNKEAIAALRQRKGRDA-KPFAVM 264

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             D+   +K+  +D     +     P    ++L      ++       L T    +P   
Sbjct: 265 CRDLETAEKYCLLDKREREILSS--PQAPIVILRRKPDAELPEELAPGLNTLGVMLPYTP 322

Query: 124 TKKLIETYGHPL---AIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L+  +  P     + S N SG   + +    L+  + +     +
Sbjct: 323 LHLLL--FSGPFDLLVMTSGNYSGLPLVKDNARALNE-LGQIADYFL 366


>gi|257062806|ref|YP_003142478.1| (NiFe) hydrogenase maturation protein HypF [Slackia
           heliotrinireducens DSM 20476]
 gi|256790459|gb|ACV21129.1| (NiFe) hydrogenase maturation protein HypF [Slackia
           heliotrinireducens DSM 20476]
          Length = 785

 Score = 70.5 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 77/234 (32%), Gaps = 31/234 (13%)

Query: 4   MSITDSNAL-RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57
           + +  S+A+  +A + L  G  +AI      GL       D+ NP A+  L   K+R   
Sbjct: 202 LDLASSDAIVERAAQCLRQGRILAIK-----GLGGFHLACDAANPEALAELRRRKRR-EG 255

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL--TLVLDLLSTTDIHPLSTANLKTA 115
                 V ++  V+    V      L      G +   ++L   +     P     L   
Sbjct: 256 KAFAVMVPNLDAVRAVCHVSKAEEDLL----TGSVRPIVLLKKRAEATFAPGLCDKLPEL 311

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              +P       L+  +G  L + S N   +   T+ +    + +       I       
Sbjct: 312 GIMLPYTPLQHLLLAAFGGMLVMTSGNLHDEPIQTDDEEAF-AKLGGIADAFIGNDRP-- 368

Query: 175 GLESTIVNVQCEKKVRILRPG--GLEIETLKRAISVELEYCVDETSTPQSPGML 226
                IV    +  VR+++ G  G  ++ ++RA          +     + G  
Sbjct: 369 -----IVTRFDDSVVRVIQVGTAGDALQMVRRARGYAPMPVPLKRHA--AEGQK 415


>gi|326389239|ref|ZP_08210807.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994602|gb|EGD53026.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 751

 Score = 70.5 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 16/165 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            + ++ A + L  G  +AI      G+       ++ +  A+  L   KKR    P    
Sbjct: 202 EDEIKCAVDALKRGKILAIK-----GIGGFHLAVNALDDEAVSTLRSRKKR-YGKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + DI  VK++  +      L          +VL       +       L T    +P   
Sbjct: 256 MKDIKQVKEYCILSEEEKKLL---LSQRKPIVLLKKKGEKLARGVADGLDTLGVMLPYAP 312

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L+ E    P+ + S N S +    + +  L   +     + +
Sbjct: 313 IHYLLMEEIDFPIVMTSGNVSEEPLCKDNEEAL-EKLKDIADVFL 356


>gi|67924417|ref|ZP_00517844.1| Hydrogenase maturation protein HypF [Crocosphaera watsonii WH 8501]
 gi|67853729|gb|EAM49061.1| Hydrogenase maturation protein HypF [Crocosphaera watsonii WH 8501]
          Length = 768

 Score = 70.5 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 19/200 (9%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61
            D++AL  +   L  G  IA+      GL       +++N  ++++L + K RP   P  
Sbjct: 200 NDNDALNLSINALKKGQIIALK-----GLGGFQLIVNAKNRESVQQLRKRKHRP-HKPFA 253

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT---DIHPLSTANLKTACFR 118
              S +  +K +  V+ +   L     P    ++L   S T   D+ P    N       
Sbjct: 254 LMNSSLEKIKSYCEVNDIEAQLLSS--PQAPIVLLKRKSKTPLDDLSPNIAPNNPYLGVM 311

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176
           +P       L+     PL   S N + +    + K  L   +     L +      +  +
Sbjct: 312 LPSSPLHHLLLHKIDFPLVATSGNIASEPICIDEKEALK-RLENIADLFLVHNRPILRPV 370

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           + ++V V   +++ I R  G
Sbjct: 371 DDSVVRVIAGREMIIRRARG 390


>gi|21674611|ref|NP_662676.1| hydrogenase maturation protein HypF [Chlorobium tepidum TLS]
 gi|21647811|gb|AAM73018.1| hydrogenase maturation protein HypF [Chlorobium tepidum TLS]
          Length = 774

 Score = 70.5 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 19/193 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A E L  G  +AI      G+       D+ N  A+RRL   K R    P    V
Sbjct: 217 DEITAAGELLAGGKILAIK-----GIGGFHLAVDASNEAAVRRLRSRKGR-EEKPFAVMV 270

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D++  +    + P     A L  P    ++L       + P            +P    
Sbjct: 271 RDLAAARALCDISPE--EKAALASPQAPIVLLRARQGLSLAPSIAPGNDRLGVMLPYSPL 328

Query: 125 KKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIV 181
             L+   G   L + SAN S +  + +    L   +       +  D  I++   +S  V
Sbjct: 329 HWLLLREGPKVLVMTSANFSEEPLVADNAEAL-ERLAGIADAFLMHDRPIARRCDDS--V 385

Query: 182 NVQCEKKVRILRP 194
            +     VR++R 
Sbjct: 386 VMSMAGAVRLIRR 398


>gi|289549183|ref|YP_003474171.1| (NiFe) hydrogenase maturation protein HypF [Thermocrinis albus DSM
           14484]
 gi|289182800|gb|ADC90044.1| (NiFe) hydrogenase maturation protein HypF [Thermocrinis albus DSM
           14484]
          Length = 755

 Score = 70.5 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 18/198 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
            T   AL    + L  G  +A     V G+        + N   +R L E K+R    P 
Sbjct: 204 ATHQEALELTVKALMDGRIVA-----VKGIGGFHLMCSAVNEETVRTLRERKRR-QEKPF 257

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                DI  V  +A  DPL + L       P   ++ +     + P     LK     +P
Sbjct: 258 AVMFRDIHQVLLYAEPDPLEIALLLS----PQRPIVLVKGKGGLAPSVAPGLKKIGAFLP 313

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ES 178
                  L+ +   P+   S N S +  + +    L   +     LI+      +   + 
Sbjct: 314 YSPLHHILLSSLNVPVIATSGNMSDEPIVKDNHEALC-KLSHFADLILLHNRDIVRRCDD 372

Query: 179 TIVNVQCEKKVRILRPGG 196
           +++ V     + I R  G
Sbjct: 373 SVIKVVGGVPLPIRRSRG 390


>gi|168230901|ref|ZP_02655959.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468469|ref|ZP_03074453.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194454833|gb|EDX43672.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334496|gb|EDZ21260.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 746

 Score = 70.1 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A   L+AG  IA     V GL       D+RN  A+  L   K RPA  PL   
Sbjct: 200 EAALQAAVAELNAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVM 253

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +     +       P +   + L  P    +++D      +       L      +P   
Sbjct: 254 LPKAQTL-------PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANP 305

Query: 124 TKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157
            +  L++   +PL + S N SG+      +  L  
Sbjct: 306 LQHLLLQALNYPLVMTSGNLSGKPPAITNEQALDD 340


>gi|38233276|ref|NP_939043.1| putative hydrogenase maturation protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199535|emb|CAE49186.1| Putative hydrogenase maturation protein [Corynebacterium
           diphtheriae]
          Length = 744

 Score = 70.1 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 19/196 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + +    + +  G  +A     V GL       D+ N  A+R L E K RP   PL   
Sbjct: 206 DDPIAYCRDAISKGKIVA-----VKGLGGFHLMCDATNDEAVRTLRERKHRP-TKPLAVM 259

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTT-DIHPLSTANLKTACFRVPC 121
           + D+   ++ A +D  +  +     P  P+ LV         +  L    L      +P 
Sbjct: 260 IPDVEKARELARLDADTTAVLTD--PAHPIVLVPTTSKQRLKLSLLIAPGLDYVGLVLPY 317

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTI 180
                L+     P+   SAN SG+        +   ++     + +       I +E ++
Sbjct: 318 TPLHTLL--VDSPVVATSANNSGEPLC-WDNDVARENLTHLADVFLMHDRPIHIPVEDSV 374

Query: 181 VNVQCEKKVRILRPGG 196
           V       V I R  G
Sbjct: 375 VVPSAHGIVPIRRSRG 390


>gi|226326234|ref|ZP_03801752.1| hypothetical protein PROPEN_00076 [Proteus penneri ATCC 35198]
 gi|225205312|gb|EEG87666.1| hypothetical protein PROPEN_00076 [Proteus penneri ATCC 35198]
          Length = 449

 Score = 70.1 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 19/207 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
            T  +AL +ACE L AG  IA     V G+       D+RN  ++  L E K RPA  PL
Sbjct: 188 ATKEHALTQACEALLAGKIIA-----VKGIGGFHLVCDARNNESVALLRERKYRPA-KPL 241

Query: 61  ICHVSDISMVKKHASVD---PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
              ++ I  +K +       P ++   +     P+ LV   +    +  L    L     
Sbjct: 242 AVMITGIDQIKANKQDPDFLPTAIQTLQSTA-SPIVLV-PKIVVPKLADLIAPGLTEIGV 299

Query: 118 RVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            +P    + L+    + PL + S N SG     + +  L+  +     L +      I  
Sbjct: 300 MLPANPLQHLLARGTNIPLVMTSGNASGHTPALSNEEALT-QLKDIADLFLMHNREIIQR 358

Query: 177 E-STIVNVQCEKKVRILRPGGLEIETL 202
              ++V ++ ++ V I R  G   + +
Sbjct: 359 ADDSLVRIEGKQSVMIRRSRGYVPDAI 385


>gi|317493907|ref|ZP_07952324.1| hydrogenase maturation protein HypF [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918234|gb|EFV39576.1| hydrogenase maturation protein HypF [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 757

 Score = 70.1 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 14/190 (7%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           ++  + L  G   AI      G+       D+ NP AI+ L E K+RPA  PL   + + 
Sbjct: 196 KELIDVLLNGGIAAIK-----GIGGFHLACDASNPQAIQLLRERKRRPA-KPLAVMLPNE 249

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK- 126
             V+     D  +  L       P   ++ L  ++ +       L      +P       
Sbjct: 250 HWVRAFCRDDVSADLL--SLLKSPAAPIVLLPKSSLVLDGIAPGLDEVGVMLPSNPVHHL 307

Query: 127 LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCE 186
           L++  G PL + S N +G     + +  L          ++         + +++     
Sbjct: 308 LLQKIGRPLVMTSGNANGLPPALSNQQALHELTGIADIWLLHNRDIVQRADDSVIRWHTN 367

Query: 187 KKVRILRPGG 196
               + R  G
Sbjct: 368 GSEMLRRSRG 377


>gi|146279404|ref|YP_001169562.1| nickel-dependent hydrogenase, large subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557645|gb|ABP72257.1| nickel-dependent hydrogenase, large subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 758

 Score = 69.7 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 17/143 (11%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL +A   L  G  +A     V GL       D+RN  A+ RL   K+RP   P     +
Sbjct: 215 ALAEAVALLRHGGVLA-----VKGLGGFHLACDARNAEAVARLRLRKRRP-GKPFAVMAA 268

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           +  M  + A +      L +     P   V+ + S   +       +      +P     
Sbjct: 269 E-EMADRIAEISEADRALLRD----PAAPVVLVPSRGVLPEGVAPGMAALGLMLPYTPLH 323

Query: 125 KKLIETYGHPLAIPSANRSGQIS 147
             L++ +G PL + S N SG+  
Sbjct: 324 HLLLQGFGGPLVMTSGNLSGEPQ 346


>gi|242278612|ref|YP_002990741.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           salexigens DSM 2638]
 gi|242121506|gb|ACS79202.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           salexigens DSM 2638]
          Length = 780

 Score = 69.7 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ALR+  + L  G         V GL       D+ NP A+R L E K RP   PL   V 
Sbjct: 208 ALRELAKLLAGGKVAG-----VKGLGGFHLVCDASNPDAVRTLRERKNRP-DKPLAVMVR 261

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+   +K A +    + L +     P+ L         + P    +       VP     
Sbjct: 262 DVDEARKLADLTDNDIELLEG-LQRPIVLA-PKGDNYSLAPEIAPDTDFIGLMVPYTPLH 319

Query: 126 KLIETYGHPL---AIPSANRSGQISITNVKHIL--SSSICKEIPLIID 168
           +++  Y   L    +PSA      ++++    +    ++ K +P I+D
Sbjct: 320 QVLLKYVSTLNDSDLPSALVMTSGNMSSAPICIGNREAL-KRLPHIVD 366


>gi|42560705|ref|NP_975156.1| hypothetical protein MSC_0153 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492201|emb|CAE76798.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320762|gb|ADK69405.1| conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 166

 Score = 69.7 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 21/174 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + KA E L     I +PT+T+YGL+        I R+ ++K      PLI  +S+++ + 
Sbjct: 7   INKAIELLKNNQIIILPTDTIYGLSAIYSLENQI-RVNQVKNADITKPLIVLISNLNQLN 65

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR-VPCGFTKKLIET 130
               +  L+     L    P T++    S+            +   R V     K++I  
Sbjct: 66  DL-EITDLTDKDY-LLNDEPTTVIFKTKSS------------SIAIRLVKREDIKQIINK 111

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG--GISKIGLESTIVN 182
            G P+   S N      +     +++    K I +  D         + S+I+ 
Sbjct: 112 IG-PIISTSVNLHNFKPLIKESDLIN--FNKNIEVFFDTQLNNKPSKIYSSIIK 162


>gi|330829830|ref|YP_004392782.1| hydrogenase maturation protein HypF [Aeromonas veronii B565]
 gi|328804966|gb|AEB50165.1| hydrogenase maturation protein HypF [Aeromonas veronii B565]
          Length = 808

 Score = 69.7 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 14/147 (9%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y L  D+RN  ++ RL  +K+R    PL   +  ++  K H +       L       P+
Sbjct: 244 YHLMCDARNEQSVARLRTLKRRAR-KPLAVMMGSLAEAKLHVTGSEDEWKLLASQA-RPI 301

Query: 93  TLVLDLL----------STTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141
           TL+              S   +       +      +P     + L++    PL   SAN
Sbjct: 302 TLLHKSKNDDRHSESGPSAAPLAEGIAPGIPYLGVMLPYTPLHQLLLDACAMPLVATSAN 361

Query: 142 RSGQISITNVKHILSSSICKEIPLIID 168
             G   +   + ++   +  EI  I+D
Sbjct: 362 GRGSPILIECEAVVRE-LGSEIDGILD 387


>gi|212711146|ref|ZP_03319274.1| hypothetical protein PROVALCAL_02218 [Providencia alcalifaciens DSM
           30120]
 gi|212686314|gb|EEB45842.1| hypothetical protein PROVALCAL_02218 [Providencia alcalifaciens DSM
           30120]
          Length = 760

 Score = 69.7 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 54/153 (35%), Gaps = 13/153 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL +    L  G  +AI      GL       D+ +   I RL + K RP+  PL   V 
Sbjct: 202 ALEQTASHLLNGKIVAIK-----GLGGFHLACDATHTHVIERLRQRKHRPS-KPLAVMVP 255

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
            I  +K+        L         P+ L+      + +      +L+     +P    +
Sbjct: 256 SIDWLKEQGVTLTEGLCALLESAAAPIVLIHKW-KNSVLSENIAPHLREIGIMLPSNPLQ 314

Query: 126 KLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
            L+ E    PL + S N SG+  +   +     
Sbjct: 315 HLLMEQVNKPLVMTSGNASGKPPVLTAQAAFLD 347


>gi|149204144|ref|ZP_01881112.1| hydrogenase maturation factor F [Roseovarius sp. TM1035]
 gi|149142586|gb|EDM30631.1| hydrogenase maturation factor F [Roseovarius sp. TM1035]
          Length = 737

 Score = 69.7 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 19/165 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+  A   L AG  IA     V GL       D+ +  A+ RL   K+RP   P     
Sbjct: 191 DAVAGAVAVLRAGGSIA-----VKGLGGFHLACDAGSGEAVARLRARKRRP-GKPFALM- 243

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV-P-CG 122
             ++M++   +V      L +     P   ++ L    ++ P   A  +     + P   
Sbjct: 244 GTLAMIRAVCAVSEEEAALLRD----PAAPIVLLRKRAEVLPDVVAPGQAVLGWMLPYTP 299

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               LI  +G PL + S N SG+  +   +      +   +   +
Sbjct: 300 LHHLLIAEFGGPLVMTSGNLSGEPQVIGNEEA-REKLGGFVDAFL 343


>gi|303250584|ref|ZP_07336781.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252970|ref|ZP_07534858.1| hypothetical protein appser6_14810 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650572|gb|EFL80731.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859608|gb|EFM91633.1| hypothetical protein appser6_14810 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 767

 Score = 69.7 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A E L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILEAVEKLRQGCIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +++ + +    +   L  +      P+ ++L    T  IH      L      +P    
Sbjct: 263 PNLNWLTELTEEEKTQLQSSAA----PI-VLLAKHKTKQIHDAVAPQLNEIGVMLPSNPL 317

Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+ +    PL + SAN+SG   + +     S 
Sbjct: 318 QHLLMKEINKPLVMTSANQSGLPPVLDNDDAFSQ 351


>gi|165976755|ref|YP_001652348.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876856|gb|ABY69904.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 767

 Score = 69.7 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A E L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILEAVEKLRQGCIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +++ + +    +   L  +      P+ ++L    T  IH      L      +P    
Sbjct: 263 PNLNWLTELTEEEKTQLQSSAA----PI-VLLAKHKTKQIHDAVAPQLNEIGVMLPSNPL 317

Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+ +    PL + SAN+SG   + +     S 
Sbjct: 318 QHLLMKEINKPLVMTSANQSGLPPVLDNDDAFSQ 351


>gi|288941674|ref|YP_003443914.1| (NiFe) hydrogenase maturation protein HypF [Allochromatium vinosum
           DSM 180]
 gi|288897046|gb|ADC62882.1| (NiFe) hydrogenase maturation protein HypF [Allochromatium vinosum
           DSM 180]
          Length = 789

 Score = 69.3 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 17/194 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+  A   L  G  +AI      G+       D+ + TA+  L + K+R    P    
Sbjct: 210 PDAIAAASRLLTEGRILAIK-----GIGGFHLACDATHDTAVETLRQRKRR-FAKPFALM 263

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
             D  ++++HA +  L         P    L+L+ L  +D+ P       T  F +P   
Sbjct: 264 ARDPDVIRRHARLSELEAEWLAS--PAAPILLLERLRESDLAPGIAPGQSTLGFMLPYSP 321

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181
               L+  +  PL + S N S +    +    L + +      ++      +  ++ ++ 
Sbjct: 322 LHHLLLADWDRPLVMTSGNLSDEPPCIDNADAL-ARLSGLADHLLLHDRDIVNRVDDSVW 380

Query: 182 NVQCEKKVRILRPG 195
            +  + + R LR  
Sbjct: 381 RLM-DGRPRPLRRA 393


>gi|47177028|ref|YP_015639.1| [Ni/Fe] hydrogenase maturation protein [Oligotropha carboxidovorans
           OM5]
 gi|47115419|emb|CAG28472.1| [NiFe] hydrogenase maturation protein HypF [Oligotropha
           carboxidovorans OM5]
          Length = 787

 Score = 69.3 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD-PLSLHLAKLFWPGP 91
           Y LA D+ +P A+ RL  +K+R A  P      D+ MV+++ SVD      L     P  
Sbjct: 221 YQLACDATDPDAVARLRGLKRREA-KPFALMARDLDMVRRYCSVDAQEEAVLLSREAP-- 277

Query: 92  LTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITN 150
             ++L+      +        +   F +P       L ++   P+ + S N S    +T+
Sbjct: 278 -IVLLESSGREKLPETIAPGQRMLGFMLPSTPLHVVLFQSLDRPVVMTSGNVSDMPQVTD 336

Query: 151 VKHILSSSICKEIPL-IIDGGISKIGLESTIVNVQCEKKVRILRPG 195
               + + +    P  ++   I    ++ ++V V     +RILR  
Sbjct: 337 DAEAV-ALLAGIAPYALVHDRIIANRVDDSVVRVMGSD-IRILRRA 380


>gi|319955838|ref|YP_004167101.1| (nife) hydrogenase maturation protein hypf [Nitratifractor
           salsuginis DSM 16511]
 gi|319418242|gb|ADV45352.1| (NiFe) hydrogenase maturation protein HypF [Nitratifractor
           salsuginis DSM 16511]
          Length = 766

 Score = 69.3 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 16/167 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + KA + +  G  +A     V GL       D+ N  A+  L   K+RP+  P    V
Sbjct: 211 SLIEKAAKMIREGKIVA-----VKGLGGFHLVCDASNAEAVAALRRRKRRPS-KPFAVMV 264

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTACFRVP-C 121
            D++M +  A +D     L +     P+ L+       +  +       +      +P  
Sbjct: 265 KDLAMARSLAQIDAGEEALLRSK-ERPIVLLKKADPYLSAIVDDPIAPGIDRIGLMLPYT 323

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                  +    PL   SAN S +  I   K  L   +   I  ++D
Sbjct: 324 PLHHLFFDFLDVPLIATSANLSDEPIIREGKE-LREKLGGVIDAVLD 369


>gi|218883731|ref|YP_002428113.1| (NiFe) hydrogenase maturation protein HypF [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765347|gb|ACL10746.1| (NiFe) hydrogenase maturation protein HypF [Desulfurococcus
           kamchatkensis 1221n]
          Length = 765

 Score = 69.3 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 80/219 (36%), Gaps = 21/219 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
            I   + +++A + +D G  +A     V G+        + +   + RL   KKRP   P
Sbjct: 197 PINTRDPIKEAAQLIDEGYIVA-----VKGIGGYHIASLATDDEVVHRLRTRKKRPR-KP 250

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D S+++    +D     + +   P    L+L     + +  L +  L      +
Sbjct: 251 FAVMGLDTSILELLVYMDERDREILES--PRAPILLLPKHEDSPVSRLVSPGLSHEGVFI 308

Query: 120 ---PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG- 175
              P  F   L+ T    L + S N SG+      +    + +   +   +      +  
Sbjct: 309 AYTPLHFLL-LMNTKDKFLIMTSGNVSGEPMC-RDEECAKNRLTSIVDYFLVHDRDIVNR 366

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
           ++ +++     + V + R  G     +K  I VEL+  V
Sbjct: 367 VDDSVIRKTGGEYVLLRRSRGYAPSWIK--IPVELQREV 403


>gi|154244298|ref|YP_001415256.1| (NiFe) hydrogenase maturation protein HypF [Xanthobacter
           autotrophicus Py2]
 gi|154158383|gb|ABS65599.1| (NiFe) hydrogenase maturation protein HypF [Xanthobacter
           autotrophicus Py2]
          Length = 763

 Score = 69.3 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 54/165 (32%), Gaps = 16/165 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ + +A   L AG  +AI      G+       D+    A+  L   K RP   PL   
Sbjct: 198 ADPIERAAALLRAGHILAIK-----GIGGFHIACDATEVDAVALLRARKHRP-TKPLAVM 251

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
            +D++       + P          P    L+L L     + P      +     +P   
Sbjct: 252 -ADMATAHGLCLITPEEEAALAH--PSAPILLLSLKPGAPLAPGIAPGQRHLGVMLPYTP 308

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L+   G PL + S NRS +  I          +   +   +
Sbjct: 309 LHHLLLAAVGRPLVMTSGNRSSEPQIFRDDEA-RERLAGIVDAFL 352


>gi|325578555|ref|ZP_08148655.1| hydrogenase maturation protein HypF [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159791|gb|EGC71921.1| hydrogenase maturation protein HypF [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 755

 Score = 69.3 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 18/169 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
            T   AL++    L  G  +A     V GL       DS N   +  L + K RP   PL
Sbjct: 199 ATHETALKQTALLLQQGYIVA-----VKGLGGFHLACDSNNQKTVDLLRQRKHRP-TKPL 252

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V D+  ++  +     +  L     P    ++L      +I      NL+     +P
Sbjct: 253 AIMVPDLQFLQNLS--SQETELLTSSAAP---IVLLAKHKVPNIADNIAPNLQEIGVMLP 307

Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
               + L+      PL + SAN SGQ  +   ++ +   +       + 
Sbjct: 308 SNPLQHLLLRAINRPLVMTSANASGQPPVLKNEYAV-EQLADLADFYLC 355


>gi|226322643|ref|ZP_03798161.1| hypothetical protein COPCOM_00415 [Coprococcus comes ATCC 27758]
 gi|225208980|gb|EEG91334.1| hypothetical protein COPCOM_00415 [Coprococcus comes ATCC 27758]
          Length = 776

 Score = 69.3 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 21/200 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+      +  G  +AI      G+       D+ N  A++RL E+KKRPA  P     
Sbjct: 200 DAIIYTRRTIAEGGIVAIK-----GIGGFHLCCDATNEEAVKRLRELKKRPA-KPFAVMA 253

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-IHPLSTANLKTACFRVPCGF 123
            D+  VK+   +      +       P+ L+       + +              +P   
Sbjct: 254 KDLESVKRECLISEEQEKILTGH-QKPILLLDKKEDGEETLCESIAPGNPKVGVMLPYAP 312

Query: 124 TKKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGL 176
            + L+ TY      P  L + S N SG       K  +   + +    ++      +I  
Sbjct: 313 VQLLLFTYDDGIRMPSFLVMTSGNTSGAPICREDKEAIQE-LSRLCDCMLSHNRKIRIRA 371

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           + ++++    +   I R  G
Sbjct: 372 DDSVMDFYKNEPYMIRRSRG 391


>gi|157961849|ref|YP_001501883.1| (NiFe) hydrogenase maturation protein HypF [Shewanella pealeana
           ATCC 700345]
 gi|157846849|gb|ABV87348.1| (NiFe) hydrogenase maturation protein HypF [Shewanella pealeana
           ATCC 700345]
          Length = 800

 Score = 69.3 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 41/217 (18%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++AL  A   L  G  +AI      G+       D+ N  ++ RL + K RPA  P    
Sbjct: 207 ADALESAINALIEGKILAIK-----GIGGFHLVCDATNDQSVERLRQRKCRPA-KPFAVM 260

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS----------------------- 100
           V +I    K  S               P+TL+  + +                       
Sbjct: 261 VENIEAAAKLVSGSQAEWSTLSSA-ERPITLMRKVTALDAHTKFASDSDFNTNAQPNAQK 319

Query: 101 --TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
             T ++  L    +      +P     + L+     PL + SAN +G+  IT     + +
Sbjct: 320 GSTLELSDLVAPEIDRLGIFLPYTPLHQLLLSGVKRPLVMTSANLAGEPIIT-DSQTIKT 378

Query: 158 SICKEIPLIIDGGISKI-GLESTIVNVQCEKKVRILR 193
            +   I  I+D     + G + ++V +  +K +++LR
Sbjct: 379 KLAHVIDNILDHDRPILNGCDDSVVQLINDK-LQVLR 414


>gi|159572301|emb|CAP19076.1| yrdC domain containing (E.coli) [Mus musculus]
          Length = 103

 Score = 69.3 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
           + +++       +    R+P   F   L + +G PLA+ SAN S Q S  +V+      +
Sbjct: 4   SEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTSANLSSQASSLSVEE--FQDL 61

Query: 160 CKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPG 195
              + L+IDGG        +  L ST+V++    K  I+RPG
Sbjct: 62  WPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 103


>gi|10440179|dbj|BAB15668.1| unnamed protein product [Homo sapiens]
          Length = 127

 Score = 68.9 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 101 TTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
           + +++            R+P   F + L + +  PLA+ SAN S Q S  NV+      +
Sbjct: 4   SEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEE--FQDL 61

Query: 160 CKEIPLIIDGGISKIGLE------STIVNVQCEKKVRILRPGG 196
             ++ L+IDGG    G        ST+V++    K  I+RPG 
Sbjct: 62  WPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPGC 104


>gi|325678983|ref|ZP_08158581.1| carbamoyltransferase HypF [Ruminococcus albus 8]
 gi|324109487|gb|EGC03705.1| carbamoyltransferase HypF [Ruminococcus albus 8]
          Length = 768

 Score = 68.9 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 21/198 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+ +    +  G   AI      G+       D+ N  A+ RL E+KKRPA  P    + 
Sbjct: 198 AITEVRRAIMEGKIAAIK-----GIGGFHLCCDAHNEDAVARLRELKKRPA-KPFALMMK 251

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           DI  V++   V           W  P+ ++L   STT I  L      T    +P    +
Sbjct: 252 DIGTVRRECHVRAGQEEYLTG-WQKPI-MLLKKRSTTTISELIAPRNTTVGVMLPYAPVQ 309

Query: 126 KLIE------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLES 178
            LI        +   L + S N  G     N +      I     +++       +  + 
Sbjct: 310 MLIFDYPDGIQFSDCLVMTSGNVRGAPICRNDEDAQKE-IGGFCDIMLSHNRQILLRADD 368

Query: 179 TIVNVQCEKKVRILRPGG 196
           ++ +    +   I R  G
Sbjct: 369 SVCDWLFGRPYMIRRSRG 386


>gi|237729666|ref|ZP_04560147.1| hydrogenase maturation protein [Citrobacter sp. 30_2]
 gi|226908272|gb|EEH94190.1| hydrogenase maturation protein [Citrobacter sp. 30_2]
          Length = 746

 Score = 68.9 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 50/153 (32%), Gaps = 20/153 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL+ A   L AG  +A     V G+       D+RN  A+  L   K RPA  PL   + 
Sbjct: 202 ALQAAVSRLKAGGIVA-----VKGIGGFHLVCDARNDNAVALLRLRKHRPA-KPLAVMLP 255

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
               +         +  L     P    +++       +       L      +P    +
Sbjct: 256 SDEGL------PEPARRLL--TTPAAPIVLVQKRYVAALSEGIAPGLTEVGVMLPANPLQ 307

Query: 126 K-LIETYGHPLAIPSANRSGQISITNVKHILSS 157
             L++    PL + S N SG+         L  
Sbjct: 308 HLLLQEMNCPLVMTSGNLSGRPPAITNAQALED 340


>gi|171184872|ref|YP_001793791.1| (NiFe) hydrogenase maturation protein HypF [Thermoproteus
           neutrophilus V24Sta]
 gi|170934084|gb|ACB39345.1| (NiFe) hydrogenase maturation protein HypF [Thermoproteus
           neutrophilus V24Sta]
          Length = 748

 Score = 68.9 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 19/200 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +   + + +A   ++ G  +A     V G+        + +   +  L   K+RP+  P
Sbjct: 198 PVEAEDPISEAARLVEEGRIVA-----VKGVGGFHIFALASDDGVVAELRRRKRRPS-QP 251

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D+    +   VD  +  L     P    ++L     +   PL +  L      +
Sbjct: 252 FAVMALDLETAGRLVVVDGAAAELLTS--PRRPVVLLPKRDGSPASPLVSPGLDREGVFL 309

Query: 120 PCGFTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176
           P      L+  E         S N  G+   T+ + +L          ++D  +  +  +
Sbjct: 310 PYTALHYLLLSEIRDRFAIATSGNIHGEPMCTDRRCVLR---LGVADYVLDHDLEIVHRV 366

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           + ++V     + V + R  G
Sbjct: 367 DDSVVRFTAGRPVLLRRGRG 386


>gi|322831871|ref|YP_004211898.1| (NiFe) hydrogenase maturation protein HypF [Rahnella sp. Y9602]
 gi|321167072|gb|ADW72771.1| (NiFe) hydrogenase maturation protein HypF [Rahnella sp. Y9602]
          Length = 775

 Score = 68.9 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 15/162 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL  A   L AG  +AI      GL       D+    A+ RL E K+RP+  PL   + 
Sbjct: 203 ALEYAVAALRAGKIVAIK-----GLGGFHLACDATQQNAVMRLRERKQRPS-KPLAVMLP 256

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           DI  + + +   P       L  P    ++    + + +       L      +P     
Sbjct: 257 DIGWLAECSDESPPFALREMLESPAAPIVLATQSAMSPLCAAIAPELDEVGLMLPFTPLH 316

Query: 125 KKLIETYGHPLAIPSANRSG-QISITNVKHILSSSICKEIPL 165
             L++T   PL + S N +G    +TN   +L   +     +
Sbjct: 317 HLLMQTVDTPLVMTSGNTNGCAPVLTNAAALL--QLDGIADM 356


>gi|89902855|ref|YP_525326.1| (NiFe) hydrogenase maturation protein HypF [Rhodoferax
           ferrireducens T118]
 gi|89347592|gb|ABD71795.1| (NiFe) hydrogenase maturation protein HypF [Rhodoferax
           ferrireducens T118]
          Length = 789

 Score = 68.9 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 35/207 (16%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +    L  G  +AI      GL       D+RNP A+ RL   K R    P    +
Sbjct: 204 DPIERTLHLLQNGKIVAIK-----GLGGFHLACDARNPEAVARLRFTKNR-EEKPFAVML 257

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           ++++ +  +A V      L +     P+ L+                L      +P    
Sbjct: 258 ANVASLAPYAQVSDAERALLES-RERPIVLLRARPGGDAALCGVAPGLLWLGVMLPTTPI 316

Query: 125 KKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
             L+  E  G P             L + SAN  G+  + ++     + +       +D 
Sbjct: 317 HFLLLHEAAGRPAGSAWTNKPQAMVLVMTSANPGGEPIVRDMAEA-RTRLVGIADAYLDH 375

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGG 196
                     IV    +  VR L PG 
Sbjct: 376 DRD-------IVARCDDSVVRPLGPGA 395


>gi|262165447|ref|ZP_06033184.1| YrdC family protein [Vibrio mimicus VM223]
 gi|262025163|gb|EEY43831.1| YrdC family protein [Vibrio mimicus VM223]
          Length = 95

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 109 TANLKTACFRVPCG-FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               KT   RVP       L+E  G PL   S    G     +    +  S+   + +I+
Sbjct: 2   NEKRKTIGIRVPDNKIALDLLEALGEPLMSTSLILPGNDFTESDPEAIRDSLEHAVDVIL 61

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGG 196
           +GG       +T+++   + ++ + R G 
Sbjct: 62  NGGYLGQ-QPTTVIDF-SDDEIVVARVGA 88


>gi|294793468|ref|ZP_06758605.1| hypothetical protein
 gi|294455038|gb|EFG23410.1| [NiFe] hydrogenase maturation protein HypF [Veillonella sp. 3_1_44]
          Length = 759

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 9/190 (4%)

Query: 17  EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           E ++ G  IAI  + V  Y L  D+RN  A++RL + K R +  PL   V  + M  +  
Sbjct: 215 ELINEGSIIAI--KGVGGYHLVCDARNDAAVQRLRKRKNR-SHKPLAIMVGTLDMAIELV 271

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            ++ + L +       P+ L+     S+  +      + +     +P     +++     
Sbjct: 272 HINDVELDILTG-MERPIVLLEKNHNSSVHLSSYVAPDNRMLGVMLPYSPMHEVLLPSDA 330

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192
              + S N+SG   + N     +  + +     +         L+ ++V V   K   I 
Sbjct: 331 AWVMTSGNKSGDSVLYNDDQAFNE-LGEVADYFLIHNREIYAPLDDSVVVVINNKPRFIR 389

Query: 193 RPGGLEIETL 202
           R  G   E +
Sbjct: 390 RSRGYVPEPI 399


>gi|156741827|ref|YP_001431956.1| (NiFe) hydrogenase maturation protein HypF [Roseiflexus
           castenholzii DSM 13941]
 gi|156233155|gb|ABU57938.1| (NiFe) hydrogenase maturation protein HypF [Roseiflexus
           castenholzii DSM 13941]
          Length = 779

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA D+ +  A+ RL   K+R A  P      D+  +++  SV+P    L +     P+
Sbjct: 240 YHLACDALDSAAVARLRVRKQREA-KPFALMAPDLEAIQRLCSVNPDEEALLESRR-RPI 297

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI------ETYGHP--LAIPSANRSG 144
            ++LD L    + P       T    +P      L+      E  G P  L + S N S 
Sbjct: 298 -VLLDALPNVPVAPSVAPGYATLGIMLPYTPLHHLLLRAYAKEAPGRPAVLVMTSGNLSD 356

Query: 145 QISITNVKHILSSSICKEIPLIIDG 169
           +         ++      +  I DG
Sbjct: 357 EPIAYRDDDAVA-----RLASIADG 376


>gi|260913681|ref|ZP_05920157.1| hydrogenase maturation protein HypF [Pasteurella dagmatis ATCC
           43325]
 gi|260632220|gb|EEX50395.1| hydrogenase maturation protein HypF [Pasteurella dagmatis ATCC
           43325]
          Length = 770

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 17/155 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL  A  +L  G  +A     V G+       D+ N  AI+ L + K+R A  PL   
Sbjct: 211 ETALSLAVSYLQQGKIVA-----VKGIGGFHLSCDATNSRAIQLLRQRKQR-ATKPLAIM 264

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V  I  +K  ++ +   L  +      P+ ++L     + +      +L      +P   
Sbjct: 265 VPSIDWLKNLSTEEKDLLQSSAA----PI-VLLAKEKVSQVCGEIAPHLNEIGVMLPSNP 319

Query: 124 TKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157
            +  L+     PL + SAN+ G   + + +     
Sbjct: 320 LQHLLLRQIQTPLVMTSANQRGLPPVLDNQRAFKE 354


>gi|288961729|ref|YP_003452039.1| hydrogenase maturation protein [Azospirillum sp. B510]
 gi|288914009|dbj|BAI75495.1| hydrogenase maturation protein [Azospirillum sp. B510]
          Length = 746

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 29/212 (13%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
                 L  G  +AI      GL       D+    A+ RL  +K+R    P    V++ 
Sbjct: 194 EDILAALRDGRIVAIK-----GLGGFHLACDATRADAVERLRRVKQR-NGKPFALMVANT 247

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
               +H  +D     L       P+TL+   ++  ++ P     L      +P      L
Sbjct: 248 ESAARHVHMDGDERSLLDGVA-RPITLLRRRVNAPELAPDIAPGLAWLGVMLPYTPLHYL 306

Query: 128 I--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           +  E  G P             L + SAN  G+             +     LI+D    
Sbjct: 307 LFHEAAGRPDGTGWLNEAQDLTLVMTSANPGGEPLAIGNAEA-RERLTGIADLIVDHDRD 365

Query: 173 KI-GLESTIVNVQCEKKVRILRPGGLEIETLK 203
            +   + ++V         + R  G   E ++
Sbjct: 366 IVIRADDSVVRKLAGAPAFLRRGRGHVPEPIR 397


>gi|13507240|gb|AAK28522.1|AF325829_2 HypF [Nostoc punctiforme PCC 73102]
          Length = 782

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 16/165 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGL-----AVDS-RNPTAIRRLYEIKKRPAMNPLICH 63
           + +   C  L  G  +AI      GL     A D+    T +++L + KKR    P    
Sbjct: 205 DDVDAVCTLLQKGEIVAIK-----GLSGIHLACDANTQETVVQKLRQRKKR-YHKPFALM 258

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
             DI +++++ +V+     L       P+ ++L  +S   + P   +   T  F +P   
Sbjct: 259 ARDIEIIEQYCTVNAKEKELLTSSA-API-VLLQAISKKLVPPSVASGQNTLGFMLPYTP 316

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               ++     P+ + S N + +    +    +   +       +
Sbjct: 317 LHHLILRRMNRPIVLTSGNLADEPQCIDNDEAI-EKLGTIADYFL 360


>gi|296139269|ref|YP_003646512.1| hypothetical protein Tpau_1551 [Tsukamurella paurometabola DSM
           20162]
 gi|296027403|gb|ADG78173.1| conserved hypothetical protein [Tsukamurella paurometabola DSM
           20162]
          Length = 258

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 18/178 (10%)

Query: 8   DSNALRKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           D+ +   A E L + G  I  PT+  Y LA  + +   + R +  K+R    P +   S 
Sbjct: 10  DAQSEEAAVELLASEGHLIVSPTKVGYILA--ATDGAGLERKFAAKQRKRTKPGVVLCSS 67

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACF 117
           +  + + A ++     L ++ W   + L  +L            +    L+T   +T+CF
Sbjct: 68  LEQLAELAELNDEVAELYRVHWDQDILLGCILPWRPDALASFPDSVARDLATDLRQTSCF 127

Query: 118 -----RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
                R      ++L E +   +   SAN SG  +   V   +   I  E  LII+  
Sbjct: 128 VIRFGRPTENIARRLWEDHRRLMFASSANPSGMGN-RGVVEGIGDRIRDEADLIIEAD 184


>gi|221633836|ref|YP_002523062.1| [NiFe] hydrogenase maturation protein HypF [Thermomicrobium roseum
           DSM 5159]
 gi|221155460|gb|ACM04587.1| [NiFe] hydrogenase maturation protein HypF [Thermomicrobium roseum
           DSM 5159]
          Length = 758

 Score = 68.5 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 19/169 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+R A  +L AG  +A     V     Y LA D+RN  A+  L E K R    P    
Sbjct: 209 EDAVRLAASWLVAGKILA-----VKGIGGYHLACDARNAAAVWALRERKFR-KEKPFALM 262

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D+    +   +D  +  L       P   +L L +  ++  ++  N       +P   
Sbjct: 263 VRDLDTAAQLVELDDAASALLGS----PARPILLLPARIELPGVAPENRD-FGIMLPYAP 317

Query: 124 TKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
              L+  +G P  L + SANRS +           + +       + G 
Sbjct: 318 LHYLLFAFGAPAVLVMTSANRSDEPIAFCDDDAF-ARLSGIADAFLVGE 365


>gi|242309350|ref|ZP_04808505.1| hydrogenase maturation protein [Helicobacter pullorum MIT 98-5489]
 gi|239523921|gb|EEQ63787.1| hydrogenase maturation protein [Helicobacter pullorum MIT 98-5489]
          Length = 770

 Score = 68.2 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 2   QIMSI--TDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKR 54
           QI+    T  N ++ A   L  G  +A+          Y L  D+ N  +I+ L + K R
Sbjct: 203 QIIPFLKTTPNPIKNAIAALKNGKILAL-----KGIGGYALICDATNQESIQILRDRKNR 257

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHP--LSTAN 111
           P   P      D+ M    AS++    +L      P    +VL    T +  P  L   N
Sbjct: 258 P-KKPFAIMCKDLKMAMSFASLNKKEKNLLTSQIAP----IVLSYAKTKNKLPLHLIAPN 312

Query: 112 LKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           L T    +P      LI      PL   SAN SG+  I +  + ++  +      ++
Sbjct: 313 LATLGIILPYAPLHYLIFNEIEFPLIFTSANISGEPIIKDF-YTITQKLQGICDGVL 368


>gi|253699760|ref|YP_003020949.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M21]
 gi|251774610|gb|ACT17191.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. M21]
          Length = 758

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 15/164 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +AL+   E L  G  +A     V     Y LAVD+ N  A+ RL + KKR    P     
Sbjct: 202 DALQLTLEALAQGKIVA-----VKGVGGYHLAVDAANQAALERLRQRKKRDE-KPFAMLA 255

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +D+  V++HA    L   L       P+ +++  L  T I  L         F +P    
Sbjct: 256 ADLDAVRRHAHCSELEGRLLLGV-ERPV-VLMRKLPGTSISDLVAPGNGWFGFMLPGNPL 313

Query: 125 KKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           + L+      PL + S N S +         L   +     L +
Sbjct: 314 QHLLAAGSRAPLVMTSGNLSDEPIAYRDGEAL-EMLSGIADLFL 356


>gi|327312058|ref|YP_004338955.1| hydrogenase maturation protein HypF [Thermoproteus uzoniensis
           768-20]
 gi|326948537|gb|AEA13643.1| hydrogenase maturation protein HypF [Thermoproteus uzoniensis
           768-20]
          Length = 747

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 17/208 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           ++  ++ + +A E +  G  +A     V     Y +   + + + +  L   K+RP+  P
Sbjct: 198 AVDAADPVLEAAELVSRGFIVA-----VKGVGGYHIFAKASDDSVVAELRRRKRRPS-QP 251

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D+   ++   VD  S  L     P    ++L     +   PL +  L      +
Sbjct: 252 FAVMALDLETARRLVEVDESSAELLAS--PQRPIVLLPKRKDSPASPLVSPGLDREGIFL 309

Query: 120 PCGFTKKLIETY--GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176
           P    + ++ +          S N  G+   T +K +L   +   +  ++D  +  +  +
Sbjct: 310 PYTALQYILLSNIDDRFAIATSGNVHGEPMCTTLKCVL-ERLRGVVDYVLDHDLEIVHRV 368

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKR 204
           + ++V         I R  G     +K 
Sbjct: 369 DDSVVRFTNGVATFIRRSRGYAPAWIKM 396


>gi|298241658|ref|ZP_06965465.1| (NiFe) hydrogenase maturation protein HypF [Ktedonobacter racemifer
           DSM 44963]
 gi|297554712|gb|EFH88576.1| (NiFe) hydrogenase maturation protein HypF [Ktedonobacter racemifer
           DSM 44963]
          Length = 785

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 22/159 (13%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A E L  G+ +AI      GL       D+ N  A++RL + K+R A  P    V
Sbjct: 211 DQIALAAEQLAQGVILAIK-----GLGGYHLACDACNAEAVQRLRQRKRREA-KPFALMV 264

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            DI + ++   +      L +     P+ ++LD L    +         T    +P    
Sbjct: 265 PDIEIAQQLCHIHENEATLLQSHR-RPI-VLLDQLPKNPVASGVAPGYDTLGLMLPYTPL 322

Query: 125 KKLIETY--------GHPL-AIPSANRSGQISITNVKHI 154
             L+  +        G P+  + S N S +         
Sbjct: 323 HHLLLRHFRECVGAEGVPVLVMTSGNLSEEPIAYRDADA 361


>gi|145591494|ref|YP_001153496.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145283262|gb|ABP50844.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum arsenaticum
           DSM 13514]
          Length = 746

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 17/207 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +   N + KA E +  G  +A     V G+        + + + +  L   K+RP+  P
Sbjct: 197 PVESDNPVLKAAELVSRGYIVA-----VKGIGGYHIFARATDDSVVAELRRRKRRPS-QP 250

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                 D+ + ++   +D  +  L     P    ++L     + I PL    L      +
Sbjct: 251 FAVMALDLRVAERLVHIDERAASLLTS--PQRPIVLLPKKEDSPISPLVAPGLDKEGVFL 308

Query: 120 PCGFTKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176
           P    + L+  +         S N  G+    ++K  L   + + +  ++D  +  +  +
Sbjct: 309 PYTALQYLLLAHTDDKFAVATSGNVHGEPMCKDLKCAL-EKLGRVVDYLLDHDLEIVHRV 367

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
           + +++         + R  G     ++
Sbjct: 368 DDSVLRFTNGVPTFLRRSRGYAPAWIR 394


>gi|117621137|ref|YP_857023.1| [NiFe] hydrogenase maturation protein HypF [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562544|gb|ABK39492.1| [NiFe] hydrogenase maturation protein HypF [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 812

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 14/147 (9%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y L  D+RN  ++ RL  +K+R    PL   +  ++  K H +       L       P+
Sbjct: 248 YHLVCDARNKQSVARLRTLKRRER-KPLAVMMGSLAEAKLHVTGCEAEWQLLASQA-RPI 305

Query: 93  TLVLDLLS----------TTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSAN 141
           TL+    +          T  +       +      +P     + L++    PL   SAN
Sbjct: 306 TLLRKRKNDDRPSKSQLTTAPLAEGIAPGIPYLGVMLPYTPLHQLLLDACAIPLVATSAN 365

Query: 142 RSGQISITNVKHILSSSICKEIPLIID 168
             G   +   + ++   +  EI  I+D
Sbjct: 366 GRGSPILIECEAVIRE-LGSEIDGILD 391


>gi|20094086|ref|NP_613933.1| hydrogenase maturation factor [Methanopyrus kandleri AV19]
 gi|19887078|gb|AAM01863.1| Hydrogenase maturation factor [Methanopyrus kandleri AV19]
          Length = 762

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 28/207 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+R+ACE ++ G  +AI      G+        +     + +L E   RP   P      
Sbjct: 203 AIREACELIEEGKIVAIK-----GIGGFHLACKTTEDEPVAKLRERLGRPQ-QPFAVMSG 256

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPL--TLVLDLLSTTDIHPLSTANLKTACFRVP--- 120
            +  V+  A VD  +  L      GP+   +VL       +  L    L T    +P   
Sbjct: 257 SLDDVRTFAEVDGTAEDLL----TGPVRPIVVLPKKEPFPLSELVAPGLHTVGVMLPYTG 312

Query: 121 -CGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGL 176
                 +       P + + SAN  G+         L   +       +  D  I+    
Sbjct: 313 LHHIMFE--RFLDEPAIVMTSANPPGEPMAIRNSDALRH-LRGIADYYLVHDRRIAARCD 369

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
           +S +V V   +   + R  G   E ++
Sbjct: 370 DS-VVRVLDGRPRSLRRSRGYVPEPIE 395


>gi|94263995|ref|ZP_01287796.1| Hydrogenase maturation protein HypF [delta proteobacterium MLMS-1]
 gi|93455588|gb|EAT05773.1| Hydrogenase maturation protein HypF [delta proteobacterium MLMS-1]
          Length = 820

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 15/161 (9%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
             A + L  G  +AI      G+       D+ N  A+  L   K R    PL   V D+
Sbjct: 235 AAARQLLRQGKIVAIK-----GIGGFHLAVDAANQEAVANLRRRKGR-QHKPLALMVGDL 288

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           +  ++   +D  +    +L  P    L+        + P            +       L
Sbjct: 289 ATARRLVQLDERAER--ELCSPARPILLALQQPEHGLAPAVAPGHGRFGVMLAYTPLHHL 346

Query: 128 IETYGHPL-AIPSANRSGQISITNVKHILSSSICKEIPLII 167
           + T   P+  + SAN   +    + +  +   +      I+
Sbjct: 347 LLTDQLPVLVMTSANPGSEPLCIDDREAI-DRLAGIADAIV 386


>gi|54020289|ref|YP_116178.1| hypothetical protein mhp670 [Mycoplasma hyopneumoniae 232]
 gi|53987462|gb|AAV27663.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 287

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 33/169 (19%)

Query: 29  TETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS--L 81
           T+TV G+A      D      +  ++ IKKR     ++  V+++  +K     +      
Sbjct: 144 TDTVPGIASFYKNCD------LDAIFVIKKRDFSKKIVTLVANLEQIKPLIKQENYKKLR 197

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            + K  WPG  TL+++  S                FR+P       +     P  + SAN
Sbjct: 198 KITKKIWPGATTLIIENQS----------------FRIPNQVKLLKLLKKNGPAFVTSAN 241

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            S +    ++          +I  I + G    G  S I ++  +K +R
Sbjct: 242 ISNE-KPLDIVSAKRKFW--QITKIFNFGPG-TGKVSRIFDLDNKKWIR 286


>gi|320104933|ref|YP_004180524.1| protein tyrosine phosphatase [Isosphaera pallida ATCC 43644]
 gi|319752215|gb|ADV63975.1| protein tyrosine phosphatase [Isosphaera pallida ATCC 43644]
          Length = 401

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 87/246 (35%), Gaps = 36/246 (14%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           S+   + + +A   L  G    +PTET Y  A  +    A+ RL ++   P  +PL   +
Sbjct: 15  SVDRLDEVFRAVACLSRGGVAVLPTETGYAAAASALATPALDRLRQLAGLPDDDPLPIAL 74

Query: 65  SDISMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLS--TTDIHPLSTANLKTAC----- 116
                ++   A+   +   LA+  WPGPLTL  +  +     +    T   +        
Sbjct: 75  RTAEELEDWIATDSRVGRRLARRAWPGPLTLTWEPGAWTAERLPQALTPEQRRRLRGGDG 134

Query: 117 ---FRVPCG-FTKKLIETYGHPLA--------------IPSANRSGQISITNVKHILSSS 158
              FR P     + LI     P+                P + ++      + +    + 
Sbjct: 135 RWTFRSPGHSLPRDLIRWTSGPVVLACLTPDRARQLLESPPSAKTDPPPPRSCESPRGAD 194

Query: 159 ICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISV-ELEYCVDET 217
           +      I+D G        T V +      RI +PG   +E L+R   +  L  C   T
Sbjct: 195 L------ILDDGPRFGLQRVTEVTLSTTG-WRITQPGTFSLEQLQRMAGIFVLFVCTGNT 247

Query: 218 STPQSP 223
              +SP
Sbjct: 248 C--RSP 251


>gi|94266997|ref|ZP_01290644.1| Peptidase M22, glycoprotease:SUA5/yciO/yrdC-like:HypF Zn-finger
           [delta proteobacterium MLMS-1]
 gi|93452311|gb|EAT02948.1| Peptidase M22, glycoprotease:SUA5/yciO/yrdC-like:HypF Zn-finger
           [delta proteobacterium MLMS-1]
          Length = 677

 Score = 68.2 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 15/161 (9%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
             A + L  G  +AI      G+       D+ N  A+  L   K R    PL   V D+
Sbjct: 95  AAARQLLRQGKIVAIK-----GIGGFHLAVDAANQEAVAALRRRKGR-QHKPLALMVGDL 148

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           +  ++   +D  +    +L  P    L+        + P            +       L
Sbjct: 149 ATARRLVQLDERAER--ELCSPARPILLALQQPEHGLAPAVAPGHGRFGVMLAYTPLHHL 206

Query: 128 IETYGHPL-AIPSANRSGQISITNVKHILSSSICKEIPLII 167
           + T   P+  + SAN   +    + +  +   +      I+
Sbjct: 207 LLTDQLPVLVMTSANPGSEPLCIHDREAI-DRLAGIADAIV 246


>gi|317055268|ref|YP_004103735.1| (NiFe) hydrogenase maturation protein HypF [Ruminococcus albus 7]
 gi|315447537|gb|ADU21101.1| (NiFe) hydrogenase maturation protein HypF [Ruminococcus albus 7]
          Length = 770

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 68/212 (32%), Gaps = 37/212 (17%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            I    A+      +  G   A     V G+       D+ N  A+ RL  +KKRPA  P
Sbjct: 194 DIKGGEAITHLRRAIMEGKIAA-----VKGIGGFHLCCDAHNEEAVSRLRGLKKRPA-KP 247

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               + D+  V++   V           W  P+ ++L   S   +      +  T    +
Sbjct: 248 FAVMMRDMDTVRRQCHVRDGQEEYLTG-WQKPI-MLLKKRSCCTLSEKIAPDNTTVGVML 305

Query: 120 PCGFTKKLIETY------GHPLAIPSANRSGQISITNVKHILSS---------SICKEIP 164
           P    + L+  Y         L + S N SG     + +  L           S  ++I 
Sbjct: 306 PYAPVQMLLFDYPDDVDMTDCLVMTSGNVSGAPICRSDEDALKEIGSFCDLMLSHNRKIL 365

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
           L  D  +          +   +K   I R  G
Sbjct: 366 LRADDSVC---------DWLFDKPYMIRRSRG 388


>gi|34557188|ref|NP_907003.1| transcriptional regulatory protein HYPF [Wolinella succinogenes DSM
           1740]
 gi|34482904|emb|CAE09903.1| TRANSCRIPTIONAL REGULATORY PROTEIN HYPF [Wolinella succinogenes]
          Length = 713

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 21/172 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + A+   C+ +  G  +A     V G+       D+     +  L E KKRP   P    
Sbjct: 160 AKAIETLCKLIKKGHIVA-----VKGIGGFHLVCDATKNRVVMELRERKKRP-TKPFAVM 213

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTD-----IHPLSTANLKTACF 117
              +  + K   + P+    A +  P  P+ L+                     + T   
Sbjct: 214 FRSVFEIGKCTELSPIEE--ATILSPERPIVLISKRRPHRLEKFLISCDGVAPRVGTMGV 271

Query: 118 RVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
            +P       L+E    PL   SAN SG+  I + K  L   +       +D
Sbjct: 272 FLPYSPLHSLLMEQAKIPLVFTSANLSGEPLIRDFKE-LCEKLSGVFDYYLD 322


>gi|218248335|ref|YP_002373706.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           8801]
 gi|218168813|gb|ACK67550.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           8801]
          Length = 776

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 17/194 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL+ A   +  G  +AI      GL       D  N TA+  L + K+RP   P      
Sbjct: 203 ALKMAANAIKEGKILAIK-----GLGGFHLMVDGSNHTAVEELRQRKRRP-HKPFALMYP 256

Query: 66  DISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            +   K H  + PL   L     P  P+ L+     T ++ P    N       +P    
Sbjct: 257 SLDSAKSHCKISPLEEQLLTS--PEAPIVLLKRKPHTINLWPFIAPNNPYWGVMLPYTPL 314

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182
              L+     PL   S N S +         L   +     L +      +  ++ ++V 
Sbjct: 315 HHLLLSDLNFPLVATSGNLSDEPICIEEGEAL-QRLSPIADLFLVHNRPILRPVDDSVVR 373

Query: 183 VQCEKKVRILRPGG 196
           +   +++ + R  G
Sbjct: 374 IMGGREMILRRARG 387


>gi|294102036|ref|YP_003553894.1| (NiFe) hydrogenase maturation protein HypF [Aminobacterium
           colombiense DSM 12261]
 gi|293617016|gb|ADE57170.1| (NiFe) hydrogenase maturation protein HypF [Aminobacterium
           colombiense DSM 12261]
          Length = 766

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 13/151 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+  C  L  G   AI      GL       D  N  A ++L   K R    P    
Sbjct: 203 EEALQICCSRLKKGETAAIK-----GLGGFHLACDPFNSEATQKLRRRKNR-KDKPFALM 256

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           VSD++  K+   +   +  L       P+ ++      + + PL           +P   
Sbjct: 257 VSDLARAKQLVYLTGTAEKLLTSS-KRPI-VLCPAKRNSGLSPLVAPGQNALGIMLPYTP 314

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHI 154
              L+  +   L + SAN S    I++    
Sbjct: 315 LHHLLLEHFDALIMTSANMSDAPIISDNNEA 345


>gi|293392064|ref|ZP_06636398.1| HypF protein [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952598|gb|EFE02717.1| HypF protein [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 761

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +   ++     L  G  +A     V G+       D+ N  A++ L E K+RP   PL  
Sbjct: 201 EKTPIKTTALLLQRGRIVA-----VKGIGGFHLACDATNANAVQLLRERKRRP-TKPLAV 254

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V D+S +         +  L     P    ++L       +       L      +P  
Sbjct: 255 MVPDLSFLTDLTEA--ETTLLTSTAAP---IVLLAKHKVPLLAEQIAPKLNEIGVMLPSN 309

Query: 123 FTKK-LIETYGHPLAIPSANRSGQISIT 149
             +  L+     PL + SAN S Q  I 
Sbjct: 310 PLQHLLLREANRPLVMTSANPSAQPPIL 337


>gi|149638532|ref|XP_001511974.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 148

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 96  LDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
           +D        PLS+   +    R+P   F ++L++ +  PLA+ SAN S Q S   VK  
Sbjct: 21  VDFRPGLPADPLSS-GSQLVGIRIPRHAFMRQLVQKFSGPLALTSANVSSQASSLTVKE- 78

Query: 155 LSSSICKEIPLIIDGGI------SKIGLESTIVNVQCEKKVRILRPGG 196
               +  ++ LI+DGG        +  L ST+V++    K  ++RPG 
Sbjct: 79  -FRDLWPQLSLIVDGGPIGDVQSPECRLGSTVVDLSVPGKFSVIRPGC 125


>gi|261868395|ref|YP_003256317.1| [NiFe] hydrogenase maturation protein HypF [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413727|gb|ACX83098.1| [NiFe] hydrogenase maturation protein HypF [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 761

 Score = 67.8 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +   ++     L  G  +A     V G+       D+ N  A++ L E K+RP   PL  
Sbjct: 201 EKTPIKTTALLLQRGRIVA-----VKGIGGFHLACDATNANAVQLLRERKRRP-TKPLAV 254

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V D+S +         +  L     P    ++L       +       L      +P  
Sbjct: 255 MVPDLSFLTDLTEA--ETTLLTSTAAP---IVLLAKHKVPLLAEQIAPKLNEIGVMLPSN 309

Query: 123 FTKK-LIETYGHPLAIPSANRSGQISIT 149
             +  L+     PL + SAN S Q  I 
Sbjct: 310 PLQHLLLREANRPLVMTSANPSAQPPIL 337


>gi|224368273|ref|YP_002602436.1| HypF [Desulfobacterium autotrophicum HRM2]
 gi|223690989|gb|ACN14272.1| HypF [Desulfobacterium autotrophicum HRM2]
          Length = 733

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 17/161 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62
           +  A+  A E L+ G  +A     V GL       ++ +  A+  L   K RP   P   
Sbjct: 166 NKGAITAAGEHLNQGAIVA-----VKGLGGFHLGVNAFDEAAVMALRTRKNRP-HKPFAL 219

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL----STTDIHPLSTANLKTACFR 118
              D+  ++K+  V      L   F   P+ L+            +        +     
Sbjct: 220 MARDLETLRKYTKVTQPEEALLTAF-HRPIVLLEKYKCTDPGGRPLASGLAPGNRRLGIM 278

Query: 119 VPCGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSS 158
           +P      L+   G   L + S NRSGQ    +    LS+ 
Sbjct: 279 LPYTPLHHLLFETGPEMLVMTSGNRSGQPLSIDNDDALSAF 319


>gi|307250589|ref|ZP_07532531.1| hypothetical protein appser4_13670 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857405|gb|EFM89519.1| hypothetical protein appser4_13670 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 767

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+  A + L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILAAADKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +++ + +    +   L  +      P+ ++L    T  IH      L      +P    
Sbjct: 263 PNLNWLTELTEEEKTQLQSSAA----PI-VLLAKHKTKQIHDAVAPQLNEIGVMLPSNPL 317

Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+ +    PL + SAN+SG   + +     S 
Sbjct: 318 QHLLMKEINKPLVMTSANQSGLPPVLDNDDAFSQ 351


>gi|72080976|ref|YP_288034.1| hypothetical protein MHP7448_0649 [Mycoplasma hyopneumoniae 7448]
 gi|71914100|gb|AAZ54011.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
          Length = 287

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 33/169 (19%)

Query: 29  TETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLS--L 81
           T+TV G+A      D      +  ++ IKKR     ++  V+++  +K     +      
Sbjct: 144 TDTVPGIASFYKNCD------LDAIFVIKKRDFSKKIVTLVANLEQIKPLIKQENYKKLK 197

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            + +  WPG  TL+++  S                FR+P       +     P  + SAN
Sbjct: 198 KITRKIWPGATTLIIENQS----------------FRIPNQVKLLKLLKKNGPAFVTSAN 241

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            S +  +  V  +       +I  I + G    G  S I ++  +K +R
Sbjct: 242 ISNEKPLDLV--VAKRKFW-QITKIFNFGPG-TGKVSRIFDLDNKKWIR 286


>gi|172035031|ref|YP_001801532.1| hydrogenase maturation protein [Cyanothece sp. ATCC 51142]
 gi|171696485|gb|ACB49466.1| hydrogenase maturation protein [Cyanothece sp. ATCC 51142]
          Length = 764

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 16/198 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPL 60
             D+NAL  +   L  G  +A+      GL       D R+  A+ +L + K RP   P 
Sbjct: 199 ANDNNALNLSINALKDGKILALK-----GLGGFQLVVDGRHTEAVTQLRQRKHRP-HKPF 252

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
               + +  +K    V+ L   +     P    ++L    +  + P    N       +P
Sbjct: 253 ALMYASLEAIKNDCEVNGLEETILTS--PQAPIVLLKRKKSQSLSPEIAPNNPYLGVMLP 310

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LES 178
                  L+     P+   S N + +    + +  L   +     L +      +  ++ 
Sbjct: 311 STPLHHLLLYKLDFPIVATSGNLASEPICIDEQEAL-QRLENIADLFLVHNRPILRPVDD 369

Query: 179 TIVNVQCEKKVRILRPGG 196
           ++V V  EK++ I R  G
Sbjct: 370 SVVRVMGEKEMVIRRARG 387


>gi|315426461|dbj|BAJ48094.1| hydrogenase maturation protein HypF [Candidatus Caldiarchaeum
           subterraneum]
          Length = 771

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 17/213 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+ +A + +D G  +A     V GL        + +   +  L   K RP   P     
Sbjct: 205 EAVIEAAKLIDDGCIVA-----VKGLGGYHIAASAVDDDVVALLRRRKNRP-TKPFAIMC 258

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +  +      +   +L L +   P    L+L +     + PL   NLK     +P    
Sbjct: 259 LNADVASLLVELTSPTLELLES--PMRPILLLPMRGDVPVSPLVAPNLKKLGVFLPYTGL 316

Query: 125 KKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181
             L+ ++       + S N   +   T     L   +   +   +      +  ++ ++V
Sbjct: 317 HYLLLSFTKQRYTIMTSGNIYNEPMCTRDDEAL-EKLADIVDFFLMHNREIVNRVDDSVV 375

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
               +K   + R  G   + ++     E E   
Sbjct: 376 RFTDQKPTMLRRGRGYAPQWIQIPFKTEREVVA 408


>gi|291276987|ref|YP_003516759.1| transcriptional regulatory protein hypF [Helicobacter mustelae
           12198]
 gi|290964181|emb|CBG40026.1| transcriptional regulatory protein hypF [Helicobacter mustelae
           12198]
          Length = 824

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 17/176 (9%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           ++ +++ AL    E L +G  +AI  + V  + L  D+RN  +I  L E K RP   P  
Sbjct: 234 ITASNTQALAICRESLRSGKILAI--KGVGGFALICDARNQKSIASLRERKTRP-HKPFA 290

Query: 62  CHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDI-----HPLSTANLKTA 115
               D++M K  A VD    + L+    P    +VL       +       L    L   
Sbjct: 291 LMAKDLAMAKNLAFVDEDEENSLSSKEAP----IVLLKKKENPLLSKENLDLIAPGLAHI 346

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
              +P       L+E    P+   SAN+SG+  I +    L   +   +  ++D G
Sbjct: 347 GIILPYSALHVLLLEGLDFPIIFTSANKSGEPII-HDYETLCQKLGNVVDGVLDYG 401


>gi|307596420|ref|YP_003902737.1| (NiFe) hydrogenase maturation protein HypF [Vulcanisaeta distributa
           DSM 14429]
 gi|307551621|gb|ADN51686.1| (NiFe) hydrogenase maturation protein HypF [Vulcanisaeta distributa
           DSM 14429]
          Length = 768

 Score = 67.4 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 19/203 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56
           +++   D   ++   + ++ G  +AI      G+        + N   + RL E K+RP 
Sbjct: 200 EVIETRDP--IKYVVKLIEEGSIVAIK-----GVGGYHISALATNDDVVLRLREKKRRP- 251

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P      DI +  K   ++  +  +     P    ++L  L  + +    +  L    
Sbjct: 252 TQPFAVMALDIYVASKLVLINDRARDVLTS--PQRPIVLLPKLPDSPVSKYVSPGLDKEG 309

Query: 117 FRVPCGFTKKLIET--YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI-SK 173
             +P      LI        L + S N   Q   T++   L   + K +  ++D  +   
Sbjct: 310 VFLPYTALHYLILMDTRDKFLVMTSGNIHDQPMCTDINCALR-KLGKVVDYVLDHDLRIA 368

Query: 174 IGLESTIVNVQCEKKVRILRPGG 196
             ++ ++V     + V I R  G
Sbjct: 369 HRVDDSVVRFTDGELVIIRRSRG 391


>gi|260887891|ref|ZP_05899154.1| [NiFe] hydrogenase maturation protein HypF [Selenomonas sputigena
           ATCC 35185]
 gi|330838755|ref|YP_004413335.1| (NiFe) hydrogenase maturation protein HypF [Selenomonas sputigena
           ATCC 35185]
 gi|260862397|gb|EEX76897.1| [NiFe] hydrogenase maturation protein HypF [Selenomonas sputigena
           ATCC 35185]
 gi|329746519|gb|AEB99875.1| (NiFe) hydrogenase maturation protein HypF [Selenomonas sputigena
           ATCC 35185]
          Length = 787

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 71/202 (35%), Gaps = 22/202 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A+ +A   L AG  +A     V G+       D+RN  A++RL E K RP   P   
Sbjct: 200 DHAAITRARHVLQAGGIVA-----VKGIGGFHLACDARNEAAVQRLREHKSRPQ-KPFAV 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            +  +  V++   +              P+ ++L+   +  I       + +    +P  
Sbjct: 254 MLRGLDAVRRECRLSDAQEAHLDNH-QKPI-ILLEKSGSGKIAASVAPAMPSLGVMLPYT 311

Query: 123 FTKKL-------IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKI 174
               L       +  +   L + S N SG       +  L  ++     LI+      ++
Sbjct: 312 PLHLLLFSLPDELADFTDCLVMTSGNPSGAPICRMDEDAL-DALSSIADLILSHDREIRL 370

Query: 175 GLESTIVNVQCEKKVRILRPGG 196
             + ++++        I R  G
Sbjct: 371 RADDSVMDFYDGAPYMIRRSRG 392


>gi|85860208|ref|YP_462410.1| hydrogenase maturation protein [Syntrophus aciditrophicus SB]
 gi|85723299|gb|ABC78242.1| hydrogenase maturation protein [Syntrophus aciditrophicus SB]
          Length = 778

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 15/164 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + KA E L  G  +A     V GL       D+ +  A+RRL   K R    PL   V
Sbjct: 218 DPIAKAIELLSKGKILA-----VKGLGGFHLAVDATDEGAVRRLRSRKYR-EEKPLAVMV 271

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            D+    K A +      L   F P    ++       +I P     +      +P    
Sbjct: 272 RDLEAASKIAEIGDRERKLL--FSPQRPIVLCRKRGAKEIAPSVAPGVPDRGIMLPYTPL 329

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L+E     L + SAN+S +      +  L   +       +
Sbjct: 330 HYLLLENTLSALVMTSANQSDEPICIGNREALK-RLKGIADAYL 372


>gi|317970215|ref|ZP_07971605.1| hydrogenase maturation protein [Synechococcus sp. CB0205]
          Length = 768

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 21/164 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
             L+ A + L AG  +A+      G+       D  +  A+ RL   K RP   PL    
Sbjct: 203 EGLQAATQLLRAGGILALQ-----GVGGFQLLADPTHGQALARLRSRKGRPE-KPLALL- 255

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLT--LVLDLLSTTDIHPLSTANLKTACF-RVPC 121
           S  + +++        L L    W  PL   +++       +      +       R   
Sbjct: 256 SSRAALEEICRPSEPELEL----WQSPLAPIVLMRRSPDAGVDARVAGSSPWLGVMRPAS 311

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISI--TNVKHILSSSICKEI 163
           G  + L+E  G PL   SANRSG+      N    L +S+   +
Sbjct: 312 GLQQLLLEHVGSPLVCTSANRSGEPIAADVNADEALLASLADGV 355


>gi|225174989|ref|ZP_03728986.1| (NiFe) hydrogenase maturation protein HypF [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169629|gb|EEG78426.1| (NiFe) hydrogenase maturation protein HypF [Dethiobacter
           alkaliphilus AHT 1]
          Length = 763

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 14/151 (9%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            K    L AG  +A     V GL       D++NP A++ L   K RPA  P      D 
Sbjct: 214 EKTLALLKAGHILA-----VKGLGGFHLACDAKNPEAVQTLRYRKGRPA-RPFAVMCRDE 267

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           ++V+++ SVD     L     P    +VL     + +         T    +P      L
Sbjct: 268 ALVRRYCSVDEKEAELLDS--PEAPIVVLRRRPGSILPKGLAPKAGTLGVMLPYTPLHHL 325

Query: 128 IETYG-HPLAIPSANRSGQISITNVKHILSS 157
           +       L + S N +G     + +  L  
Sbjct: 326 LFDQDLEMLVMTSGNETGLPLAKDTQEALRD 356


>gi|116180920|ref|XP_001220309.1| hypothetical protein CHGG_01088 [Chaetomium globosum CBS 148.51]
 gi|88185385|gb|EAQ92853.1| hypothetical protein CHGG_01088 [Chaetomium globosum CBS 148.51]
          Length = 1139

 Score = 67.0 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 10   NALRKACEFLDAGLP-IAIPTETVYGLAVDSRNPTAIRRLYEIKK 53
            + L++A   L      +A PTETVYGL  D+    A+R +Y  K 
Sbjct: 1088 DPLQEAAHLLRTTDVPVAFPTETVYGLGADATRSAAVRGIYSAKG 1132


>gi|194337081|ref|YP_002018875.1| (NiFe) hydrogenase maturation protein HypF [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309558|gb|ACF44258.1| (NiFe) hydrogenase maturation protein HypF [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 849

 Score = 67.0 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +A  FL  G+ +A+      GL       D+RN  A+RRL E K R A  P    +
Sbjct: 248 DVVAEAVAFLRRGMIVALK-----GLGGFHLAVDARNEAAVRRLRERKGREA-KPFAVMI 301

Query: 65  SDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            D S+V  +  V       L+    P    ++L    ++++ P      +     +P   
Sbjct: 302 RDRSLVHGYCEVSETEMAALSAAQAP---IVLLKKKKSSNLAPSIAPGNERLGVMLPYTP 358

Query: 124 TKKLIETYGHPL-AIPSANRSGQISITNVKHIL 155
              L+      +  + SAN S +   +  +  L
Sbjct: 359 LHTLLFDETLDILVMTSANFSEEPIASENEEAL 391


>gi|94967955|ref|YP_590003.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550005|gb|ABF39929.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Koribacter
           versatilis Ellin345]
          Length = 740

 Score = 67.0 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 65/195 (33%), Gaps = 18/195 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + A+ +  E L  G  +A     V     Y LA D+RN  A+R L E K R    P    
Sbjct: 188 AAAIERTAEILRDGKILA-----VKGLGGYHLACDARNGNAVRALRERKYR-KEKPFAVM 241

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             D+ +  +   +   +  L       P+ L         + P +          +P   
Sbjct: 242 ARDVEIAAQIVELSNETRELLTGIA-RPIVLARAKQQFPGVAPENHE----LGVMLPYTP 296

Query: 124 TKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              L+   G P  L + SANRS +         + S +      +I        ++ ++ 
Sbjct: 297 LHHLLFASGAPEVLVMTSANRSSEPIAYEDADAIESLVGIADAFLIGDRPIARRVDDSVA 356

Query: 182 NVQCEKKVRILRPGG 196
            V       + R  G
Sbjct: 357 RVGAYGPAILRRARG 371


>gi|86156904|ref|YP_463689.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773415|gb|ABC80252.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 773

 Score = 67.0 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 18/196 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ +R     L +G   A     V     Y LA D+  P A+R L E K+R    PL   
Sbjct: 213 ADPIRDCAAALRSGGIAA-----VKGLGGYHLACDASAPAAVRTLRERKRR-EEKPLAVM 266

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           V+D+   +  A + P    L     P    ++        + P            +    
Sbjct: 267 VADLDAARALAELSPEEAALLAA--PERPIVLCRRRPDAALAPELAPGSPIVGLMLAYAP 324

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180
               L+   G PL + SAN S +      +  L + +     L +  D  I+    +S +
Sbjct: 325 LHHLLLADAGVPLVMTSANLSDEPIAFEDEEAL-ARLGGIADLYLVHDRPIASRCDDS-V 382

Query: 181 VNVQCEKKVRILRPGG 196
             V   + + + R  G
Sbjct: 383 ARVVAGRPMVMRRSRG 398


>gi|327399469|ref|YP_004340338.1| (NiFe) hydrogenase maturation protein HypF [Hippea maritima DSM
           10411]
 gi|327182098|gb|AEA34279.1| (NiFe) hydrogenase maturation protein HypF [Hippea maritima DSM
           10411]
          Length = 734

 Score = 66.6 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 25/198 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A++K  EFL  G  IA+    V G+       D+ N  AI R+ +IK R    P    V
Sbjct: 198 EAIKKLSEFLTKGG-IAL----VKGIGGYHLYCDAFNEDAIERVKQIKNR-YSKPFAVIV 251

Query: 65  SDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            DI+ +  +  +      L +    P    +VL  L +  +   +T         +P   
Sbjct: 252 RDINTLSDYCFMSTEEQKLIESQIKP----IVLLRLKSNKLQ-SATMGSPYLGAMLPYTP 306

Query: 124 TKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTI 180
              LI  +     L   SAN + +  I + K  ++     E   ++      I  LE +I
Sbjct: 307 LHLLIFHFSKLKFLIATSANFTEKPLIYSDKDAVN---FSETDYVLTNNRRIIRPLEDSI 363

Query: 181 VNVQCEKKV--RILRPGG 196
           V +   KK+  R  R   
Sbjct: 364 VKLVGNKKLIYRYARGFA 381


>gi|305664300|ref|YP_003860588.1| (NiFe) hydrogenase maturation protein HypF [Ignisphaera aggregans
           DSM 17230]
 gi|304378869|gb|ADM28708.1| (NiFe) hydrogenase maturation protein HypF [Ignisphaera aggregans
           DSM 17230]
          Length = 777

 Score = 66.6 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 81/222 (36%), Gaps = 18/222 (8%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           +  S+ L+ A + +D G  +A     V G+        + +   +  L + K RP   P 
Sbjct: 199 VDSSDPLKDAAKLIDEGYIVA-----VKGIGGFHIAALATDDDVVLMLRKRKNRP-TKPF 252

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                ++ +  +    V P S+ L     P    ++L     + +    + N+      +
Sbjct: 253 AIMCLNLDIASRLVYFVPPSSIDLLTS--PQRPIVLLPKRHDSPVSRYVSPNMDVEGVFL 310

Query: 120 P--CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176
           P        L+ET    L + SAN  G+    + + + +  +   +  ++      +  +
Sbjct: 311 PYTALHYLLLMETRDKFLIMTSANIHGEPMCIDDECVFT-KLRGVVDYVLTHDREIVNRV 369

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
           + ++V      +V + R  G   + ++  I ++ +       
Sbjct: 370 DDSVVRYTDGIQVILRRGRGYAPKWIRLPIDLKRDVVAFGAE 411


>gi|270159424|ref|ZP_06188080.1| (NiFe) hydrogenase maturation protein HypF [Legionella longbeachae
           D-4968]
 gi|289165765|ref|YP_003455903.1| Hydrogenase maturation protein HypF [Legionella longbeachae NSW150]
 gi|269987763|gb|EEZ94018.1| (NiFe) hydrogenase maturation protein HypF [Legionella longbeachae
           D-4968]
 gi|288858938|emb|CBJ12864.1| Hydrogenase maturation protein HypF [Legionella longbeachae NSW150]
          Length = 741

 Score = 66.6 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 71/214 (33%), Gaps = 29/214 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ K  + +  G  IA+      GL       D+RN TA+ +L   K R A  P    V+
Sbjct: 187 SVEKIAQAIIQGEIIALK-----GLGGYQLICDARNQTAVTKLRARKNREA-KPFALMVA 240

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           ++   K+   +D       +     P+ L+      +D        L T    +P     
Sbjct: 241 NVLSAKRFVQIDNQERDALEN-RTRPIVLLKKRERASDYSAEIAPGLNTLGIMLPYTPVH 299

Query: 126 KLI---------------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            L+               E     L + SAN  G+  I   +      +      I+   
Sbjct: 300 YLLFNAFAGHTNGSEWLQELQTRVLVVTSANLGGEPLIIEDEDA-EQKLKYIADKIVSYN 358

Query: 171 ISKIG-LESTIVNVQCEKKVRILRPGGLEIETLK 203
              I   + +++ +   K + I R  G     ++
Sbjct: 359 RQIITRTDDSVIRLVNNKPIFIRRSRGFVPTPIQ 392


>gi|209520674|ref|ZP_03269425.1| SUA5/YciO/YrdC/YwlC [Burkholderia sp. H160]
 gi|209498874|gb|EDZ98978.1| SUA5/YciO/YrdC/YwlC [Burkholderia sp. H160]
          Length = 89

 Score = 66.6 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 31/83 (37%)

Query: 238 LRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSI 297
           + A+        +           +A     ++        A  L+  ++  D +  + I
Sbjct: 1   MLAVREAGERVALVARASRAGQWADADGVHFVAAPEDPHVYARELYGLLRALDRANVTRI 60

Query: 298 AFSSIPNHGLGIAINNRLERAAA 320
               +P+    IA+N+RL RAAA
Sbjct: 61  LIEKLPDTIEWIAVNDRLGRAAA 83


>gi|163848323|ref|YP_001636367.1| (NiFe) hydrogenase maturation protein HypF [Chloroflexus
           aurantiacus J-10-fl]
 gi|163669612|gb|ABY35978.1| (NiFe) hydrogenase maturation protein HypF [Chloroflexus
           aurantiacus J-10-fl]
          Length = 771

 Score = 66.6 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 36/219 (16%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           S+  ++ L  A   L  G  +A     V     Y LA  + + TA+ RL + K+R A  P
Sbjct: 198 SVDTTDPLIAAATALANGDIVA-----VKGLGGYHLACAADDETAVSRLRQRKQREA-RP 251

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   V D ++      +DP++  +     P    ++L       + P     ++T    +
Sbjct: 252 LALMVRDEAVAAHLCFIDPVAHTILTS--PARPIVLLPRRPDAPVAPSVAPGMQTLGIML 309

Query: 120 P----CGFTKKLIETYGHP-----LAIPSANRSGQISITNVKH-------ILSSSICKEI 163
           P                 P     + + S N S +               I  + +    
Sbjct: 310 PYTPLHHLLLAEYARVVGPTRPAAIVLTSGNLSDEPIAYEDDDAVQRLSPIADAMLSHNR 369

Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           P+ +    S       +V V     + I R  G     +
Sbjct: 370 PIHMRCDDS-------VVRVAAGGPLLIRRSRGYAPAPI 401


>gi|268590653|ref|ZP_06124874.1| [NiFe] hydrogenase maturation protein HypF [Providencia rettgeri
           DSM 1131]
 gi|291314046|gb|EFE54499.1| [NiFe] hydrogenase maturation protein HypF [Providencia rettgeri
           DSM 1131]
          Length = 758

 Score = 66.6 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 15/156 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            N L  A + L AG  +AI      G+       D+ N  A+  L   K RP   PL   
Sbjct: 200 ENVLVLAAQQLLAGKIVAIK-----GIGGFHLACDASNDQAVEALRVRKCRP-TKPLAVM 253

Query: 64  VSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           V  ++ ++ H    PLS  L  L   P    +++       +       L      +P  
Sbjct: 254 VPSLNWLELH--NMPLSDGLCALLKSPAAPIVLIKNWKNHVLSQYIAPKLAEIGVMLPSN 311

Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
             + L+      PL + S N SG+  + + +  L+ 
Sbjct: 312 PLQHLLMAQVNCPLVMTSGNVSGKPPVLSEQAALAD 347


>gi|139438804|ref|ZP_01772288.1| Hypothetical protein COLAER_01292 [Collinsella aerofaciens ATCC
           25986]
 gi|133775884|gb|EBA39704.1| Hypothetical protein COLAER_01292 [Collinsella aerofaciens ATCC
           25986]
          Length = 823

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 56/177 (31%), Gaps = 26/177 (14%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           + +  E L +G  +AI      GL       D+ N  A+  L   K+R +  PL   V  
Sbjct: 222 IERCVELLASGGIVAIK-----GLGGFHLACDAANEQAVAELRRRKRR-SNKPLAVMVRS 275

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL--STTDIHPLSTANLKTACFRVP---- 120
           ++   +   +D     L       P+ L+       +    P + A   +    +P    
Sbjct: 276 LADAGRLCHIDDAERELLAGSI-RPIVLLRRRAVCESNGGSPDAFALAPSVAHDLPELGV 334

Query: 121 -------CGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
                          E  G H L + S N S +   T+        +   I   + G
Sbjct: 335 MLPYTPLQHLLLAAAEACGMHALVMTSGNLSEEPIETDDDLAWEHLVAAGIADALLG 391


>gi|118469275|ref|YP_887045.1| [NiFe] hydrogenase maturation protein HypF [Mycobacterium smegmatis
           str. MC2 155]
 gi|118170562|gb|ABK71458.1| [NiFe] hydrogenase maturation protein HypF [Mycobacterium smegmatis
           str. MC2 155]
          Length = 763

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 62/164 (37%), Gaps = 23/164 (14%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPL 60
            T  +AL++A + L  G  +A     V     Y LA D+ N  ++  L   K+R    P 
Sbjct: 199 ATGEHALQRARQLLATGGIVA-----VKGIGGYHLACDAANRVSVAELRHRKRRG-DKPF 252

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V+D++  +  A V  ++  L     P    +++   S T + P  + +       + 
Sbjct: 253 AVMVADLATARAVAEVGDVAARLLCG--PQRPIVLIPRRSETLVCPEVSPHNPDLGVMLA 310

Query: 121 CGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILS 156
                 L+  +G P        L + SAN SG+         L 
Sbjct: 311 YSPLHALL--FGLPGDPPGPAALVMTSANLSGEPICFADDDALQ 352


>gi|332666278|ref|YP_004449066.1| acylphosphatase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335092|gb|AEE52193.1| Acylphosphatase [Haliscomenobacter hydrossis DSM 1100]
          Length = 760

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
            +  AL+ A   L+AG  +A     V G+       D+ N   I  L + K+RP+  P  
Sbjct: 200 NNEAALQTAIAALNAGKIVA-----VKGIGGFLLLADATNANTINLLRQRKQRPS-KPFA 253

Query: 62  CHVSDISMVKKHASVDPLS-LHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
               ++ ++     +   +   L     P  L  +     +          L+     +P
Sbjct: 254 LLYPNLEILASDVILSSEATAALQSSVAPIVLLPLQPQPKSGVQVAALAPGLRRLGVMLP 313

Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                +LI    G PL   S N S        +  L   +      I+
Sbjct: 314 YAPLLELIGTALGRPLVATSGNLSHTPIEYTNEQAL-ERLSGIADGIL 360


>gi|91780578|ref|YP_555785.1| hydrogenase maturation protein HypF [Burkholderia xenovorans LB400]
 gi|91693238|gb|ABE36435.1| Hydrogenase maturation protein HypF [Burkholderia xenovorans LB400]
          Length = 812

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 16/148 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + L  AC +L  G  +AI      GL        +    A+ +L  +K R    P     
Sbjct: 217 DPLEVACRYLRLGGIVAIK-----GLGGFQLACMATAQAAVTKLRVLKHRAR-KPFALLA 270

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL--STANLKTACFRVPCG 122
            D++M +++ SV      L +    GP+ +++  +  T    L        T  F +P  
Sbjct: 271 RDVTMAERYCSVSNADAALLRSAA-GPI-VIMPAIGRTTAADLSGVAPGTATLGFMLPST 328

Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISIT 149
               LI      P+ + S N + +   T
Sbjct: 329 PLHHLIMRALDAPIVLTSGNVADEPQCT 356


>gi|320531009|ref|ZP_08032041.1| [NiFe] hydrogenase maturation protein HypF [Selenomonas artemidis
           F0399]
 gi|320136758|gb|EFW28708.1| [NiFe] hydrogenase maturation protein HypF [Selenomonas artemidis
           F0399]
          Length = 796

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 65/231 (28%), Gaps = 30/231 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D +A+ +    + AG  +A     V G+       D+R+  A+ RL   K R     L  
Sbjct: 216 DGDAIAETRRIVAAGGIVA-----VKGIGGYHLVCDARSEAAVTRLRARKHR-EDKALAV 269

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---------------IHPL 107
                  V++   V      L       P+  ++ L                    + P 
Sbjct: 270 MAGSPETVRELCEVSADEERLLTS----PVAPIVLLRRHRRDAADAADGAGDAAGGVAPS 325

Query: 108 STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                      +P      L+   G    + SAN SG+  +                ++ 
Sbjct: 326 VAPGNAYLGVMLPYAPVHLLLLAPGDLWVMTSANLSGEPILYEDAAAERELRDIADAILT 385

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
                   ++ ++V +    ++ + R  G     +      ++        
Sbjct: 386 HNREIAHRVDDSVVRMAAGGRMILRRSRGFAPTPVALPFDSKISVLAGGAE 436


>gi|145224560|ref|YP_001135238.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium gilvum
           PYR-GCK]
 gi|145217046|gb|ABP46450.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium gilvum
           PYR-GCK]
          Length = 756

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 19/159 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + LR A   L AG  +A     V     Y LA D+  P A+  L   K+R    P    
Sbjct: 202 ESGLRAARRMLRAGKIVA-----VKGIGGYHLACDATGPRAVTTLRARKRRG-DKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D+   ++ A VDP S  L     P    +++   +   +      +       +    
Sbjct: 256 VPDLDAARRVAEVDPASAALLTG--PARPIVLMPRRAGAAVADAVAPHNPDLGVVLAYAP 313

Query: 124 TKKLIETYGH------PLAIPSANRSGQISITNVKHILS 156
              L+  +G        L + S N +G+           
Sbjct: 314 LHTLLFGFGGDEPAPQTLVMTSGNVAGEPICFTDDDAWQ 352


>gi|315444891|ref|YP_004077770.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp.
           Spyr1]
 gi|315263194|gb|ADT99935.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp.
           Spyr1]
          Length = 756

 Score = 66.2 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 19/159 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + LR A   L AG  +A     V     Y LA D+  P A+  L   K+R    P    
Sbjct: 202 ESGLRAARRMLRAGKIVA-----VKGIGGYHLACDATGPRAVTTLRARKRRG-DKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D+   ++ A VDP S  L     P    +++   +   +      +       +    
Sbjct: 256 VPDLDAARRVAEVDPASAALLTG--PARPIVLMPRRAGAAVADAVAPHNPDLGVVLAYAP 313

Query: 124 TKKLIETYGH------PLAIPSANRSGQISITNVKHILS 156
              L+  +G        L + S N +G+           
Sbjct: 314 LHTLLFGFGGDEPAPQTLVMTSGNVAGEPICFTDDDAWQ 352


>gi|322379274|ref|ZP_08053660.1| (NiFe) hydrogenase maturation protein HypF [Helicobacter suis HS1]
 gi|321148311|gb|EFX42825.1| (NiFe) hydrogenase maturation protein HypF [Helicobacter suis HS1]
          Length = 693

 Score = 66.2 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 23/187 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            N L KA E +  G  + +      G+        + N  A++ +  IK RP   PL   
Sbjct: 195 KNPLEKAIEAILDGEVVGLK-----GIGGFALVCQAENKRAVQTIRTIKARP-FKPLAMM 248

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +  +    +   ++ L            +  ++  L   +       NL +    +P   
Sbjct: 249 LPSLEKALEVVYLNSLEREALSSV----IAPIVLALKKNNHFDHLALNLDSLGVILPYSG 304

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKI-GLESTI 180
              L+      L   SAN  G+  IT++K     S+  ++P   I+D     I G++ ++
Sbjct: 305 LHYLLTRACGSLVFTSANLKGEPIITDLK-----SLQDKLPLKYILDHNRPIIHGIDDSV 359

Query: 181 VNVQCEK 187
           V    ++
Sbjct: 360 VRCVGQQ 366


>gi|322379853|ref|ZP_08054141.1| transcriptional regulator (hypF) [Helicobacter suis HS5]
 gi|321147731|gb|EFX42343.1| transcriptional regulator (hypF) [Helicobacter suis HS5]
          Length = 710

 Score = 66.2 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 23/187 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            N L KA E +  G  + +      G+        + N  A++ +  IK RP   PL   
Sbjct: 182 KNPLEKAIEAILDGEVVGLK-----GIGGFALVCQAENKRAVQTIRTIKARP-FKPLAMM 235

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +  +    +   ++ L            +  ++  L   +       NL +    +P   
Sbjct: 236 LPSLEKALEVVYLNSLEREALSSV----IAPIVLALKKNNHFDHLALNLDSLGVILPYSG 291

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIP--LIIDGGISKI-GLESTI 180
              L+      L   SAN  G+  IT++K     S+  ++P   I+D     I G++ ++
Sbjct: 292 LHYLLTRACGSLVFTSANLKGEPIITDLK-----SLQDKLPLKYILDHNRPIIHGIDDSV 346

Query: 181 VNVQCEK 187
           V    ++
Sbjct: 347 VRCVGQQ 353


>gi|238019571|ref|ZP_04599997.1| hypothetical protein VEIDISOL_01440 [Veillonella dispar ATCC 17748]
 gi|237864270|gb|EEP65560.1| hypothetical protein VEIDISOL_01440 [Veillonella dispar ATCC 17748]
          Length = 759

 Score = 65.9 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 13/147 (8%)

Query: 17  EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           E ++ G  IAI      G+       D+RN  A++RL + K RP   PL   V  +    
Sbjct: 215 ELINEGSIIAIK-----GIGGYHLVCDARNDAAVQRLRKRKNRP-HKPLAIMVGSLDTAI 268

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLST-TDIHPLSTANLKTACFRVPCGFTKKLIET 130
           +   +    L +       P+ L+     +   + P    +       +P     +++  
Sbjct: 269 ELVHLSDEELDVLTG-MERPIVLLKRNTDSLVRLSPHVAPDNHMLGVMLPYTPMHEVLLP 327

Query: 131 YGHPLAIPSANRSGQISITNVKHILSS 157
                 + S NRSG   + +       
Sbjct: 328 SDAAWVMTSGNRSGDPVLYDDNQAFEE 354


>gi|209522937|ref|ZP_03271494.1| (NiFe) hydrogenase maturation protein HypF [Arthrospira maxima
           CS-328]
 gi|209496524|gb|EDZ96822.1| (NiFe) hydrogenase maturation protein HypF [Arthrospira maxima
           CS-328]
          Length = 796

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 16/154 (10%)

Query: 21  AGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            G  +A+      GL       D+ N  A+ +L   K RP   P       I  + +   
Sbjct: 222 RGQIVAMK-----GLGGFQLLVDATNAAAVEQLRVRKHRP-HKPFAVMYRSIQQIAQVCD 275

Query: 76  VDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGH 133
           +        +   P  P+ L+  L   + +              +P       L+     
Sbjct: 276 ISAAEEQWLRS--PQAPIVLLSRLPGASALADNVAPGNPNLGVMLPYTPLHHLLMAELDF 333

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           P+   S N S +   T+    L   + K   + +
Sbjct: 334 PIVATSGNFSNEPICTDQTEAL-HRLGKIADIFL 366


>gi|120403350|ref|YP_953179.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956168|gb|ABM13173.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium
           vanbaalenii PYR-1]
          Length = 777

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 19/192 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+  A   L AGL +A     V     Y LA  + +  A+ RL   K RPA  P     +
Sbjct: 198 AVESAAAALRAGLIVA-----VKGVGGYHLACRADDDDAVARLRRRKNRPA-KPFAVMAA 251

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           DI   ++   VD  +          P+ L+        +H     NL      +      
Sbjct: 252 DIEAARRICHVDDAAARSLTSAA-APIVLLPARAGAVSVH--VAPNLTDLGVMLAYSPVH 308

Query: 126 KLI-ETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVN 182
            L+      P L + SAN+ G   +     +    I      ++       +  E ++V+
Sbjct: 309 HLLFAEPDMPALVMTSANQGGSPIVFRDGDL--DWIDGLADAVLTHDRPIHVPCEDSVVS 366

Query: 183 VQCEKKVRILRP 194
           +  +     LR 
Sbjct: 367 IDDDGNEVPLRR 378


>gi|282898409|ref|ZP_06306400.1| Hydrogenase maturation protein HypF [Raphidiopsis brookii D9]
 gi|281196940|gb|EFA71845.1| Hydrogenase maturation protein HypF [Raphidiopsis brookii D9]
          Length = 803

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 27/177 (15%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      GL       D+   T + +L + KKR    P     
Sbjct: 210 DEVDAVCTLLQKGEIVAIK-----GLGGFHLACDATQETVVEKLRQRKKR-YHKPFALMA 263

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-------------TTDIHPLSTAN 111
            DI+++ ++  +  L   L     P    ++L +                  I       
Sbjct: 264 RDINIISQYCQISDLEKDLLTS--PAAPIVLLKINPQNNLPHNSIKSQIGNPIARAIAPG 321

Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             T  F +P       ++     P+ + S N + +    +    +   +     L +
Sbjct: 322 QNTLGFMLPYTPLHHLILRRMKVPIVLTSGNIADEPQCIDNSDDIKKKLVSIADLFL 378


>gi|158340830|ref|YP_001521998.1| Ni-Fe hydrogenase maturation protein HypF [Acaryochloris marina
           MBIC11017]
 gi|158311071|gb|ABW32684.1| Ni-Fe hydrogenase maturation protein HypF [Acaryochloris marina
           MBIC11017]
          Length = 834

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 50/156 (32%), Gaps = 17/156 (10%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+  A   L  GL +A     V G+       D+RN  A++RL   KKRP   P      
Sbjct: 233 AIGLAAVALRQGLIVA-----VKGVGGFHLLVDARNSDAVKRLRTRKKRP-NKPFALMYP 286

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS---TTDIHPLSTANLKTACFRVPCG 122
            +  VK    V  L   L +   P    ++L          I              +P  
Sbjct: 287 SLERVKHTCEVSELEAELLQS--PKAPIVLLQRRHLSLADPIADEVAPGCSHLGVLLPYT 344

Query: 123 FTKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157
               L+      P+   S N +G     N +  L  
Sbjct: 345 PIHHLLMADLDFPIVATSGNLNGAPISFNGEKALDD 380


>gi|303326180|ref|ZP_07356623.1| [NiFe] hydrogenase maturation protein HypF [Desulfovibrio sp.
           3_1_syn3]
 gi|302864096|gb|EFL87027.1| [NiFe] hydrogenase maturation protein HypF [Desulfovibrio sp.
           3_1_syn3]
          Length = 835

 Score = 65.9 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 100/304 (32%), Gaps = 51/304 (16%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            AL +A + L  G  +A+      GL       D+R+  A++ L   K RP   PL   V
Sbjct: 229 EALARAGQVLLDGGVLALK-----GLGGFQLACDARDAAAVQELRRRKNRP-HKPLALMV 282

Query: 65  SDISMVKKHASVDPLSLHLAKLFWP-GPLTL----VLDLLSTTDIHPLSTANLKTACFRV 119
            D++  +    + P    L +   P  P+ L     +    T  + P    + +     +
Sbjct: 283 GDLATARALCELTPEHEALLQS--PEKPIVLCPRRAVPAGETDPLPPEVAPDTRNVGLML 340

Query: 120 P-----CGFTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           P          +L      P  L + SAN  G+      +  L+         ++     
Sbjct: 341 PYTPLHAALFDRLAPRAPLPPALVMTSANPHGEPLCLGNREALARLDHLADAWLLHDRDI 400

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
            + ++ ++++V      R LR G  + E    +    + + VD     ++ G     Y P
Sbjct: 401 LVRVDDSVLSVA----PRPLRTGDFKDEA--ASSPATVPHAVDPFFYRRARG-----YVP 449

Query: 233 RS--------------QVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEA 278
           R                  L A         +  G+          +  N +  G  +E 
Sbjct: 450 RPVFLPPFGEGGEEGDPTVLGAGAELKGTICLTRGHEAFVGQHIGDLE-NPATLGFYEEV 508

Query: 279 AFNL 282
           A +L
Sbjct: 509 AAHL 512


>gi|166031967|ref|ZP_02234796.1| hypothetical protein DORFOR_01668 [Dorea formicigenerans ATCC
           27755]
 gi|166028420|gb|EDR47177.1| hypothetical protein DORFOR_01668 [Dorea formicigenerans ATCC
           27755]
          Length = 798

 Score = 65.9 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 20/199 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+  A   +  G  +A     V G+       D+   +A+  L   KKRP   P     
Sbjct: 200 DAVTYARRVIAEGGIVA-----VKGIGGFHLCCDATKESAVELLRTRKKRPV-KPFAVMA 253

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +   V+    +      +       P+ L+      + +              +P    
Sbjct: 254 RNEEAVRSVCELSEEQEKILTGH-QKPILLLDKKEGVSKLAKSVAPFNPKVGIMLPYAPV 312

Query: 125 KKLIETYG----HP--LAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLE 177
           + L+  Y      P  L + S N SG     + +      +      I+      +I  +
Sbjct: 313 QLLLFQYDDGIQMPDFLVMTSGNISGAPICRDDREA-KEELSHLCDCILSHDRKIRIRAD 371

Query: 178 STIVNVQCEKKVRILRPGG 196
            ++++   E+   I R  G
Sbjct: 372 DSVMDFYREEPYMIRRSRG 390


>gi|291567263|dbj|BAI89535.1| hydrogenase maturation protein HypF [Arthrospira platensis NIES-39]
          Length = 796

 Score = 65.9 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 16/156 (10%)

Query: 19  LDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  G  +AI      GL       D+ N  A+ +L   K RP   P       I  + + 
Sbjct: 220 IGRGQIVAIK-----GLGGFQLLVDATNAAAVEQLRIRKHRP-HKPFGVMYRSIQQISQV 273

Query: 74  ASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETY 131
             +        +   P  P+ L+      + +              +P       L+  +
Sbjct: 274 CDMSAAEEQWLRS--PQAPIVLLSRRRGVSPVADNVAPGNPNLGVMLPYTPLHHLLMAEF 331

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             P+   S N S +   T+    L   + K   + +
Sbjct: 332 DFPIVATSGNFSNEPICTDETEAL-QRLGKIADIFL 366


>gi|315654499|ref|ZP_07907405.1| hydrogenase maturation protein HypF [Mobiluncus curtisii ATCC
           51333]
 gi|315490963|gb|EFU80582.1| hydrogenase maturation protein HypF [Mobiluncus curtisii ATCC
           51333]
          Length = 774

 Score = 65.9 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + AL +A + L AG  +A     V G+       D+RN  A+ RL + K R    P    
Sbjct: 218 AAALDEARQRLRAGQILA-----VKGIGGFHLMCDARNEAAVARLRKRKDRG-DKPFAVM 271

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           V+D +   + A +D   L   +     P+ ++       D+ P     L      +P   
Sbjct: 272 VADAATAARLARLDADQLRTLQTAA-RPI-VIAPFGQEYDLAPAVAPGLGDVGILLPYAP 329

Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              +L+  E     L   S N +G+      +   +  +   +   +
Sbjct: 330 LHLELLSGECAQMALVATSGNLAGEPLCFTNQDA-AERLAGIVDAFV 375


>gi|94267020|ref|ZP_01290664.1| Hydrogenase maturation protein HypF [delta proteobacterium MLMS-1]
 gi|93452274|gb|EAT02918.1| Hydrogenase maturation protein HypF [delta proteobacterium MLMS-1]
          Length = 820

 Score = 65.9 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 15/159 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           A + L  G  +AI      G+       D+ N  A+  L   K R    PL   V D++ 
Sbjct: 237 ARQLLRQGKIVAIK-----GIGGFHLAVDAANQEAVAALRWRKGR-QHKPLALMVGDLAT 290

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
            ++   +D  +    +L  P    L+        + P            +       L+ 
Sbjct: 291 ARRLVQLDERAER--ELCSPARPILLALQQPEHGLAPAVAPGHGRFGVMLAYTPLHHLLL 348

Query: 130 TYGHPL-AIPSANRSGQISITNVKHILSSSICKEIPLII 167
           T   P+  + SAN   +    + +  +   +      I+
Sbjct: 349 TDQLPVLVMTSANPGSEPLCIHDREAI-DRLAGIADAIV 386


>gi|302344160|ref|YP_003808689.1| (NiFe) hydrogenase maturation protein HypF [Desulfarculus baarsii
           DSM 2075]
 gi|301640773|gb|ADK86095.1| (NiFe) hydrogenase maturation protein HypF [Desulfarculus baarsii
           DSM 2075]
          Length = 790

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ L +A   L  GL +A     V GL       ++ +  A+ RL   K+R A  PL   
Sbjct: 208 ADPLARAVRALAEGLIVA-----VKGLGGFHLAANAHDAGAVARLRAGKRRLA-KPLALM 261

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V+D+      A +D     L       P+ LV  +    D+ P     LK     +P   
Sbjct: 262 VADLEAAHGLAWLDAEEARLL-ASRQRPIVLV-RVRDGVDLAPGIAPGLKRVGLMLPYTP 319

Query: 124 TKKLI------ETYGHPLAIPSANRSGQISITNVKHILS 156
              LI      +     L + S N S +    +    ++
Sbjct: 320 LHHLIMDRAQSQHGLRALVMTSGNPSDEPICQDAAQAVA 358


>gi|258646998|ref|ZP_05734467.1| [NiFe] hydrogenase maturation protein HypF [Dialister invisus DSM
           15470]
 gi|260404439|gb|EEW97986.1| [NiFe] hydrogenase maturation protein HypF [Dialister invisus DSM
           15470]
          Length = 769

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 9/154 (5%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +    L+ A + L  G  I +  ++V  Y L        A++RL  +K+R    P    V
Sbjct: 201 SQEELLQSAKDLLFHGEIIMV--KSVGGYNLVCRGDRDDAVQRLRVLKQR-RDKPFALLV 257

Query: 65  SDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTD-IHPLSTANLKTACFRVPCG 122
           + +   +K   +      L +   P  P+ L+     +   I P  T   ++    +P  
Sbjct: 258 ATVGEAEKLCHISREEKELLES--PQKPIVLLKRRKKSMPLISPAVTELTESLGVFLPPF 315

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
               L+     PL + S N +G+  I       +
Sbjct: 316 GLYALLAEIKIPLVVTSCNFTGEPIIYKQADAFA 349


>gi|311278320|ref|YP_003940551.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter cloacae
           SCF1]
 gi|308747515|gb|ADO47267.1| (NiFe) hydrogenase maturation protein HypF [Enterobacter cloacae
           SCF1]
          Length = 739

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 20/143 (13%)

Query: 21  AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           +G  +A     V GL       D+ N  A+  L   K+RPA  PL   + D S +     
Sbjct: 207 SGGIVA-----VKGLGGFHLVCDAGNDEAVATLRARKRRPA-KPLAVMIPDASHL----- 255

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHP 134
             P S          P+ LV    +   +       L       P    + L+ +    P
Sbjct: 256 --PASARTLLALPAAPIVLVAK-AAVDGVCAGIAPGLAEVGVMRPANPVQHLLMQALKRP 312

Query: 135 LAIPSANRSGQISITNVKHILSS 157
           L + S N SG+            
Sbjct: 313 LVMTSGNLSGKPPALCNADACDD 335


>gi|323706319|ref|ZP_08117885.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534371|gb|EGB24156.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 748

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLI 61
           T+ + +    E L  G  +AI      G+       ++ +  A+ RL + K R    PL 
Sbjct: 200 TNIDPIMAVAEDLRKGKIVAIK-----GIGGFHLAVNALSHEAVLRLRDRKNR-YGKPLA 253

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             + D+  VK+H  V P  + L       P+ L+        +       L +    +P 
Sbjct: 254 LMMKDVEDVKRHCHVSPEEIELLNSQR-RPIVLLKKKYEFEGVSD----GLDSVGVMLPY 308

Query: 122 GFTKKLIETY-GHPLAIPSANRSGQISITNVKHILS 156
                L+  Y   P+ + S N S +    +    L 
Sbjct: 309 APIHYLLFKYIDFPVVMTSGNISEEPLCKDNDEALK 344


>gi|302386979|ref|YP_003822801.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           saccharolyticum WM1]
 gi|302197607|gb|ADL05178.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           saccharolyticum WM1]
          Length = 795

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 14/158 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           M   +  A  KA   L  G  +A     V G+              ++RL ++K R    
Sbjct: 202 MERKEKEAFEKALTVLSKGGIVA-----VKGIGGFHLVCSPFREDTVKRLRKLKGR-EEK 255

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P       I  + +   V      L +        +VL  +    + P  +         
Sbjct: 256 PFAVMFPGIQEISRCCLVSAEEKALLES---KARPIVLLSIKQDTMAPSVSNESIYCGAF 312

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
           +P    + ++     PL + SAN +GQ  I   + +L+
Sbjct: 313 LPYTPLQHMLTKRLGPLIMTSANIAGQPIIREDESMLA 350


>gi|268318135|ref|YP_003291854.1| (NiFe) hydrogenase maturation protein HypF [Rhodothermus marinus
           DSM 4252]
 gi|262335669|gb|ACY49466.1| (NiFe) hydrogenase maturation protein HypF [Rhodothermus marinus
           DSM 4252]
          Length = 773

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 55/155 (35%), Gaps = 16/155 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
             ALR+A E +  G  +A     V GL       D+RN  A+R L   K R A  P    
Sbjct: 207 DEALRRAAEAICEGRIVA-----VKGLGGFHLIVDARNEAAVRVLRLRKGREA-KPFALM 260

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVP- 120
              ++ V+ HA V      L     P    ++L   +     + P            +P 
Sbjct: 261 YPSLAAVRAHACVSEAEAALLTS--PAAPIVLLRRTAAGREALAPSVAPGNPYLGIMLPY 318

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
                 L+   G P+   S NRS +    + +  L
Sbjct: 319 TPLHHLLLTELGFPVVATSGNRSEEPICIDEREAL 353


>gi|193213281|ref|YP_001999234.1| (NiFe) hydrogenase maturation protein HypF [Chlorobaculum parvum
           NCIB 8327]
 gi|193086758|gb|ACF12034.1| (NiFe) hydrogenase maturation protein HypF [Chlorobaculum parvum
           NCIB 8327]
          Length = 776

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 19/193 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A E L  G  +AI      G+       D+ N  A++ L   K R    P    V
Sbjct: 219 DEITAAGELLAGGKILAIK-----GIGGFHLAVDASNEQAVQLLRTRKGR-EEKPFAVMV 272

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+   +    + P       L  P    ++L   S   + P  +         +P    
Sbjct: 273 RDLDTARALCEIGPEEE--VALASPQAPIVLLRKRSDLPLAPSISPGNDRLGVILPYSPL 330

Query: 125 KKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTIV 181
             L+   G   L + SAN S +  + +    L   +       +  D  I++   +S  V
Sbjct: 331 HWLLLREGPEVLVMTSANFSEEPLVADNAEAL-ERLTGIADAFLMHDRPIARRCDDS--V 387

Query: 182 NVQCEKKVRILRP 194
            +     VR++R 
Sbjct: 388 VMSMADAVRLIRR 400


>gi|190150650|ref|YP_001969175.1| carbamoyltransferase HypF [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263998|ref|ZP_07545599.1| hypothetical protein appser13_14040 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915781|gb|ACE62033.1| carbamoyltransferase HypF [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306870687|gb|EFN02430.1| hypothetical protein appser13_14040 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 761

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A E L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILEAVEKLRQGCIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            ++  + + A  + L L  +      P+ ++L       +H L   +L      +P    
Sbjct: 263 PNLDWLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317

Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+      PL + SANRSG     N +  L S
Sbjct: 318 QHLLMHEVNMPLVMTSANRSGLPPALNNQDALDS 351


>gi|313897054|ref|ZP_07830601.1| carbamoyltransferase HypF [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312974501|gb|EFR39969.1| carbamoyltransferase HypF [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 814

 Score = 65.5 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 65/231 (28%), Gaps = 30/231 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D +A+ +    + AG  +A     V G+       D+R+  A+ RL   K R     L  
Sbjct: 206 DGDAIAETRRIVAAGGIVA-----VKGIGGYHLVCDARSEAAVTRLRARKHR-EDKALAV 259

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---------------IHPL 107
                  V++   V      L       P+  ++ L                    + P 
Sbjct: 260 MAGSPETVRELCEVSADEEWLLTS----PVAPIVLLRRHRRDAADAADGAGDADGGVAPS 315

Query: 108 STANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                      +P      L+   G    + SAN SG+  +                ++ 
Sbjct: 316 VAPGNAYLGVMLPYAPVHLLLLAPGDLWVMTSANMSGEPILYEDAAAERELRGIADAILT 375

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS 218
                   ++ ++V +    ++ + R  G     +      ++        
Sbjct: 376 HNREIAHRVDDSVVRMAAGGRMILRRSRGFAPTPVALPFDSKISVLAGGAE 426


>gi|91975655|ref|YP_568314.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris BisB5]
 gi|91682111|gb|ABE38413.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris BisB5]
          Length = 763

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 71/209 (33%), Gaps = 26/209 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +  E L AG  +A+ +   Y L  D+ N  ++  L   K+R A  P    V+  + + 
Sbjct: 198 IDEIVERLRAGGIVALKSLGGYHLLCDATNEASVAELRRRKRRDA-KPFAVMVASEASLD 256

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--E 129
           +  + D     L +     P+ L+ D  +   + P     L+     +P      L+   
Sbjct: 257 RVVAADAAERALLRSV-ERPIVLMQDRGA---LAPSVAPGLRHVGVMLPYTPLHHLLFHA 312

Query: 130 TYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKI 174
             G P             L   SAN  G   + +        +     LI+  D  I   
Sbjct: 313 AAGSPQGRGWQRAPLDLVLVATSANCGGDPIVIDDAE---RKLGGIADLIVSHDRDIVVR 369

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLK 203
             +S ++ +       I R  G     ++
Sbjct: 370 ADDS-VMAISDGGPAFIRRARGFTPRPVR 397


>gi|282899854|ref|ZP_06307816.1| Hydrogenase maturation protein HypF [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195336|gb|EFA70271.1| Hydrogenase maturation protein HypF [Cylindrospermopsis raciborskii
           CS-505]
          Length = 802

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 27/160 (16%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +   C  L  G  +AI      GL       D+   T + +L + KKR    P     
Sbjct: 210 DEVDAVCTLLRKGEIVAIK-----GLGGFHLACDATQETVVEKLRQRKKR-YHKPFALMA 263

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-------------TTDIHPLSTAN 111
            DI+++ ++  +  L   L     P    ++L +                  I       
Sbjct: 264 RDINIISQYCQISDLEKDLLTS--PAAPIVLLKINPQNNLPHNSVKSQIGKPIARAIAPG 321

Query: 112 LKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITN 150
             T  F +P       ++     P+ + S N + +    +
Sbjct: 322 QNTLGFMLPYTPLHHLILRRMNVPIVLTSGNIADEPQCID 361


>gi|256829566|ref|YP_003158294.1| (NiFe) hydrogenase maturation protein HypF [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578742|gb|ACU89878.1| (NiFe) hydrogenase maturation protein HypF [Desulfomicrobium
           baculatum DSM 4028]
          Length = 766

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 20/161 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +A+R     L  G  +A+      GL       ++R+  A++RL + KKR    PL  
Sbjct: 202 NDDAIRATARLLMDGGLVAMK-----GLGGFHLVCNARDQEAVQRLRDRKKR-QDKPLAI 255

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120
            V D+   +   ++      L       P+ L         + P  + +       +P  
Sbjct: 256 MVRDLDAARSLCALREAEGDLLTS-RQRPIVLA-QARPDRGLAPGLSPDTAYLGVMLPYT 313

Query: 121 --CGFTKKLIETYG-HPLAI--PSANRSGQISITNVKHILS 156
                    +   G  P A+   S N S +      +  L 
Sbjct: 314 PLHHVLFDELSHCGAGPTALVMTSGNLSSEPICLGNREALQ 354


>gi|78221346|ref|YP_383093.1| hydrogenase maturation protein HypF [Geobacter metallireducens
           GS-15]
 gi|78192601|gb|ABB30368.1| Hydrogenase maturation protein HypF [Geobacter metallireducens
           GS-15]
          Length = 760

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 16/214 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +A   L  G  +A     V     Y LAVD+ N  A+R L   K R    P     
Sbjct: 201 DPVEEAAGLLSQGKIVA-----VKGIGGYHLAVDALNDGAVRELRRRKARDE-KPFALMA 254

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            D++ V+  A  D +   L     P    ++L       + PL+          +P    
Sbjct: 255 PDLAAVRTFALPDAVEERLLAA--PEHPIVLLRKRPDNPVSPLAAPANGYFGTMLPYAPL 312

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVN 182
              L+      L + S N S +             +       +          + +++ 
Sbjct: 313 HHLLLRDRFTALVMTSGNLSDEPIAYRDAEA-RERLAYIADAFLVHDREIHTRTDDSVIR 371

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
           V     + + R  G     ++  + +     V  
Sbjct: 372 VFRGNPLFLRRSRGYVPREVRMPVEIPAVLAVGA 405


>gi|315657593|ref|ZP_07910475.1| hydrogenase maturation protein HypF [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492065|gb|EFU81674.1| hydrogenase maturation protein HypF [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 774

 Score = 65.1 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 17/167 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + AL +A + L AG  +A     V G+       D+RN  A+ RL + K R    P    
Sbjct: 218 AAALDEARQRLRAGQILA-----VKGIGGFHLMCDARNEAAVARLRKRKDRG-DKPFAVM 271

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           V+D +   + A +D   L   +     P+ ++       D+ P     L      +P   
Sbjct: 272 VADAATAARLARLDADQLRTLQTAA-RPI-VIAPFGQEYDLAPAIAPGLGDVGILLPYAP 329

Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              +L+  E     L   S N +G+      +   +  +   +   +
Sbjct: 330 LHLELLSGECAQMALVATSGNLAGEPLCFTNQDA-AERLAGIVDAFV 375


>gi|167835603|ref|ZP_02462486.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia thailandensis
           MSMB43]
          Length = 78

 Score = 65.1 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
             +  A  L+  ++  D +  + I    +P+    IA+N+RL RAAA
Sbjct: 26  DPQVYARELYGLLRALDRAQVARILVEKLPDTAEWIAVNDRLGRAAA 72


>gi|318604289|emb|CBY25787.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 758

 Score = 65.1 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LAVD+ N  A+ RL E K RP+  PL   + D   ++   S    +  L  L  P    +
Sbjct: 227 LAVDATNAVAVARLRERKHRPS-KPLAVMLPDADWLQSCVSSADHTALLGLLCSPAAPIV 285

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKH 153
           ++     + +       L      +P    +  L++    PL + S N  G+    + + 
Sbjct: 286 LVAKQPESPLCVAVAPELPEIGVMLPANPLQHLLLQQVARPLVMTSGNGRGKPPALSNQQ 345

Query: 154 ILSS 157
            LS+
Sbjct: 346 ALSA 349


>gi|186474345|ref|YP_001863316.1| (NiFe) hydrogenase maturation protein HypF [Burkholderia phymatum
           STM815]
 gi|184198304|gb|ACC76266.1| (NiFe) hydrogenase maturation protein HypF [Burkholderia phymatum
           STM815]
          Length = 791

 Score = 65.1 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 9/185 (4%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
            +ALR A + L  GL +A+  ++V G  L VD+RNP A+ RL + K+R +  P    ++ 
Sbjct: 218 DDALRAAIDALRTGLTVAV--KSVGGFHLVVDARNPDAVARLRDRKRRNS-KPFALMMAS 274

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +   ++      L     +   PG   ++L  L+   +              +P      
Sbjct: 275 VETARRWTDCSELEAQWLRS--PGRPIVLLRKLNGVGLAENVAPRNPNLGVMLPSAPLHY 332

Query: 127 LIET-YGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           L+ +    P L + S N S        +  L         ++++     I ++ +++   
Sbjct: 333 LLLSDPDLPALVMTSGNVSEFPIAYRNEEALVRLFEVSDLVLLNDRDIAIRIDDSVIRCS 392

Query: 185 CEKKV 189
              ++
Sbjct: 393 NHPQL 397


>gi|222056299|ref|YP_002538661.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. FRC-32]
 gi|221565588|gb|ACM21560.1| (NiFe) hydrogenase maturation protein HypF [Geobacter sp. FRC-32]
          Length = 756

 Score = 65.1 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 15/200 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +A   L +G  +A     V     Y LAVD  N  A+  L   KKR    P    V
Sbjct: 200 DPVAEAIRLLKSGKIVA-----VKGTGGYHLAVDPFNGPAVAELRHRKKR-NEKPFALMV 253

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D++     A +DP+   L     P    ++L       I P            +     
Sbjct: 254 RDLTQAGVLARLDPIEERLLAG--PEKPIVLLCKREGNGIAPQVAPANDYLGLMLASTPL 311

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTIVNV 183
             L+      L + S N S +      +  +  S+       +          + +++ V
Sbjct: 312 HHLLLRDFIALVMTSGNVSDEPVAYRDREAV-ESLAGIADYFLGHDRRVHCRNDDSVIRV 370

Query: 184 QCEKKVRILRPGGLEIETLK 203
              K + + R  G    +++
Sbjct: 371 FQGKPIFLRRSRGYVPRSIR 390


>gi|89902945|ref|YP_525416.1| hypothetical protein Rfer_4197 [Rhodoferax ferrireducens T118]
 gi|89347682|gb|ABD71885.1| expressed protein [Rhodoferax ferrireducens T118]
          Length = 243

 Score = 65.1 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 86/244 (35%), Gaps = 43/244 (17%)

Query: 1   MQIMSITDSNALR-------KACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53
           MQ+++     +L         A   L AG    +P +  Y +        A+ R+YE+K 
Sbjct: 1   MQLINRGAEPSLDVMKADALTAFRILKAGGVAVLPFDVSYAIFGH--TSLAVERVYELKN 58

Query: 54  RPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTA 110
           R    P    V +  +     +       L K     +  PL++V         H     
Sbjct: 59  RTPTKPNGV-VGNWDVFNAVMATTERDKALVKCITQDYDLPLSIVAPFRRD---HEWLQT 114

Query: 111 NLKTACFRVPCGFTKKLIETYGH--------------PLAIPSANRSGQISITNVK-HIL 155
           +   A  R   G T  L+   G               PL   SAN+S  +S +  +   +
Sbjct: 115 SDFGAVRRSTKGDTMDLLLNAGVIHNELARLSWESCTPLFGSSANKS--LSGSKFELEDV 172

Query: 156 SSSICKEIPLIIDGGISKIG----LESTIVNVQCEKKVRILRPGGL---EIETLKRAISV 208
              +     ++I  G SK      + STI+ +      ++LR GG    + E +++   V
Sbjct: 173 EDELKAGCDIVIGYGRSKYANKYQIGSTIIEL---PSWKVLRFGGCYERQAEIIRKHFDV 229

Query: 209 ELEY 212
           EL  
Sbjct: 230 ELPP 233


>gi|98152890|ref|YP_611139.1| (NiFe) hydrogenase maturation protein HypF [Sphingopyxis alaskensis
           RB2256]
 gi|95105287|gb|ABF54910.1| (NiFe) hydrogenase maturation protein HypF [Sphingopyxis alaskensis
           RB2256]
          Length = 793

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 22/195 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A   L  G  +AI      GL       D+     +  L   K+R          
Sbjct: 207 DDVDAAGGMLMNGHIVAIK-----GLGGFHLACDATRAEVVADLRMRKRR-RGKAFALMA 260

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GF 123
            D+ +++++A        L     P    +VL   S   +       L    F +P    
Sbjct: 261 RDLDVIRRYAEFSDQEAELLAS--PEAP-IVLLRASGEPLAEAVAPGLDRIGFMLPHTPL 317

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK--EIPLIIDGGISKIGLES-TI 180
              L+     P+ + S N SG+   T+ +    + +    E  L+ D  I+    +S T 
Sbjct: 318 HHLLLRRMKRPVVMTSGNLSGRPQCTSNEQA-RAELEGIAEFALMHDRHIANRIDDSVTR 376

Query: 181 VNVQCEKKVRILRPG 195
           V++    +VR+LR  
Sbjct: 377 VDL---GRVRLLRRA 388


>gi|223934717|ref|ZP_03626637.1| (NiFe) hydrogenase maturation protein HypF [bacterium Ellin514]
 gi|223896672|gb|EEF63113.1| (NiFe) hydrogenase maturation protein HypF [bacterium Ellin514]
          Length = 791

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 22/202 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +AL +A   +  G  +A+      GL       D+R   A+  L + K+R    P     
Sbjct: 203 DALLQAASAVRHGEILALK-----GLGGFHLIVDARAEDAVLLLRKRKRR-EDKPFALMY 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS---------TTDIHPLSTANLKTA 115
             +  ++    V  L   L +     P+ L+                 I      +  T 
Sbjct: 257 PSLEAIRLGCEVSELEERLLRSS-ESPIVLLERHSGVAEAQAATNKESIASSIAPHNPTL 315

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              +P       L+   G P+   S N + +    + +  L          ++       
Sbjct: 316 GVMLPYTPLHHLLLRELGFPVVATSGNLTNEPICIDEREALERLHGVADLFLVHNRPIAR 375

Query: 175 GLESTIVNVQCEKKVRILRPGG 196
            ++ ++V +   +++ + R  G
Sbjct: 376 HMDDSVVRIMLGRELVLRRSRG 397


>gi|313904892|ref|ZP_07838264.1| (NiFe) hydrogenase maturation protein HypF [Eubacterium
           cellulosolvens 6]
 gi|313470325|gb|EFR65655.1| (NiFe) hydrogenase maturation protein HypF [Eubacterium
           cellulosolvens 6]
          Length = 851

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 25/149 (16%)

Query: 19  LDAGLPIA-----------IPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           L AG  +A           +PT++  G           RR+ E KKR    P       +
Sbjct: 270 LKAGAVVAVKDIGGFHLAFLPTDSEPG-----------RRVREFKKRD-NKPFAVMFPSV 317

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
             ++++  V      +  L  P P+ ++L      D  P            +PC   + L
Sbjct: 318 ESIREYCEVSAKEEEIL-LSDPRPI-VLLRKKPGMDFVPEVCGRSDRIGCMLPCNPLQIL 375

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILS 156
           +     PL + S NR G+  I   + ++ 
Sbjct: 376 LLKEVGPLVMTSGNRGGEPIIIRDEDMMK 404


>gi|298376326|ref|ZP_06986282.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 3_1_19]
 gi|298267363|gb|EFI09020.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 3_1_19]
          Length = 760

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 34  GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           G+       D+ N  A+ RL EIK+R    P      D+  ++ + + +P+      + W
Sbjct: 223 GIGGYHLICDASNERAVARLREIKQRD-TKPFAVMFRDLEHLQVYTATEPMEERCL-VSW 280

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGFTKKLIETYGHP-LAIPSANRSG 144
             P+ L   L   + +       + T       +P  +        G P L + S N S 
Sbjct: 281 RRPIVL---LRQRSRLASGINPGMHTLGCMLSYMPIHY--DWFARTGIPALVMTSGNLSD 335

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRILRPGGLEIE 200
                       + +  ++ +++         ++ +++ V   +   I R  G   E
Sbjct: 336 LPIAIT-PEDAEAQLAGKVAVLLHHNRPIHNRVDDSVLQVCGGQPCLIRRSRGYVPE 391


>gi|330952311|gb|EGH52571.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7]
          Length = 108

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
                 WPGP T ++       +    T   +T   RV    T + +     PL   SAN
Sbjct: 1   DRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSAN 58

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
            +G+ +  +   +       +I  ++ G +      S I ++   + VR 
Sbjct: 59  PAGRPAARSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIATAQIVRA 107


>gi|162452854|ref|YP_001615221.1| hydrogenase maturation protein HypF [Sorangium cellulosum 'So ce
           56']
 gi|161163436|emb|CAN94741.1| hydrogenase maturation protein HypF [Sorangium cellulosum 'So ce
           56']
          Length = 783

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 33/215 (15%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           S +   ALR+A   + AG  +A     V GL       D+ +P A+  L   K+R A  P
Sbjct: 203 SGSPDGALREAAAAVLAGKVVA-----VKGLGGFHLLVDATSPDAVALLRRRKRRDA-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVL------DLLSTTDIHPLSTANLK 113
                  +  V+    V        +    GP   ++         +   I         
Sbjct: 257 FAVMFGSLDAVRGACRVSAAEADALR----GPEAPIVLLRRLSPAAARVAIADAVAPGTP 312

Query: 114 TACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                +P     + ++E  G P+   S N S +   T+    L   +     L +     
Sbjct: 313 RLGALLPYTPLHRLVLELVGRPVVCTSGNLSDEPICTDASDAL-ERLGGIADLFLVHDRP 371

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
                  IV    +    + R G   +E L+RA  
Sbjct: 372 -------IVRPLDDS---VARVGHAGVELLRRARG 396


>gi|312141482|ref|YP_004008818.1| hydrogenase maturation protein hypf [Rhodococcus equi 103S]
 gi|311890821|emb|CBH50140.1| putative hydrogenase maturation protein HypF [Rhodococcus equi
           103S]
          Length = 789

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D + LR A + +  G  +A     V G+       D+ NP A++ L E K RPA  P   
Sbjct: 210 DDDVLRIAQQAITEGGIVA-----VKGIGGFHLVCDATNPAAVQLLRERKARPA-KPFAV 263

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPL--TLVLDLLSTTDIHPLSTANLKTACFRVP 120
             +DI   ++  S+D +          GP    ++L   +T  +      +L      +P
Sbjct: 264 MAADIRAAREVCSIDDVEA----AALSGPARPIVLLRRRTTDVVAAAVAPSLDDVGILLP 319

Query: 121 CGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 L+              L + S NR G+             +     + +
Sbjct: 320 YAPLHHLLFAPTPGSRVPPPRLLVMTSGNRGGEPLAFTNDDA-RQRLSGIADVFL 373


>gi|56751568|ref|YP_172269.1| hydrogenase maturation protein HypF [Synechococcus elongatus PCC
           6301]
 gi|81301360|ref|YP_401568.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus elongatus
           PCC 7942]
 gi|56686527|dbj|BAD79749.1| hydrogenase maturation protein HypF [Synechococcus elongatus PCC
           6301]
 gi|81170241|gb|ABB58581.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus elongatus
           PCC 7942]
          Length = 770

 Score = 64.7 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
             +L +A   L  G  +A+      GL       D+    A++RL + K RP   PL   
Sbjct: 208 DRSLTEAIAALQQGKILALK-----GLGGFQLLVDACQTDAVQRLRDRKSRP-HKPLALL 261

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           + D+  V++   +      L +   P    ++L  +++         +       +P   
Sbjct: 262 LPDLEAVRQLCQISAAEAELLQS--PAAPIVLLRAIASEPWLAAIAPDCCELGLMLPATP 319

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSS 157
              L+   +G PL   S NRSG     +    L S
Sbjct: 320 LHHLLSRDFGQPLVATSGNRSGDPLCWDEVDALES 354


>gi|257060339|ref|YP_003138227.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           8802]
 gi|256590505|gb|ACV01392.1| (NiFe) hydrogenase maturation protein HypF [Cyanothece sp. PCC
           8802]
          Length = 780

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 17/194 (8%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL+ A   +  G  +AI      GL       D  N TA+  L + K+RP   P      
Sbjct: 203 ALKMAANAIKEGKILAIK-----GLGGFHLMVDGSNHTAVEELRQRKRRP-HKPFALMYP 256

Query: 66  DISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            +   K H  +  L   L     P  P+ L+     T ++ P    N       +P    
Sbjct: 257 SLDSAKSHCEISLLEEQLLTS--PEAPIVLLKRKPHTINLWPFVAPNNPYWGVMLPYTPL 314

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVN 182
              L+     PL   S N S +         L   +     L +      +  ++ ++V 
Sbjct: 315 HHLLLSDLNFPLVATSGNLSDEPICIEEGEAL-QRLSPIADLFLVHNRPILRPVDDSVVR 373

Query: 183 VQCEKKVRILRPGG 196
           +   +++ + R  G
Sbjct: 374 IMGGREMILRRARG 387


>gi|304390385|ref|ZP_07372338.1| hydrogenase maturation protein HypF [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326141|gb|EFL93386.1| hydrogenase maturation protein HypF [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 774

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           + AL +A   L AG  +A     V G+       D+RN  A+ RL + K R    P    
Sbjct: 218 AAALDEARRRLRAGQILA-----VKGIGGFHLMCDARNEAAVARLRKRKDRG-DKPFAVM 271

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           V+D +   + A +D   L   +     P+ ++       D+ P     L      +P   
Sbjct: 272 VADAATAARLARLDADQLRTLQTAA-RPI-VIAPFGQEYDLAPAIAPGLGDVGILLPYAP 329

Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              +L+  E     L   S N +G+      +   +  +   +   +
Sbjct: 330 LHLELLSGECAQMALVATSGNLAGEPLCFTNQDA-AERLAGIVDAFV 375


>gi|238762328|ref|ZP_04623299.1| Carbamoyltransferase hypF [Yersinia kristensenii ATCC 33638]
 gi|238699313|gb|EEP92059.1| Carbamoyltransferase hypF [Yersinia kristensenii ATCC 33638]
          Length = 524

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLT 93
           LAVD+ N  A+ RL E K RP   PL   + D   +       D  +L         P+ 
Sbjct: 227 LAVDATNAAAVARLRERKHRP-TKPLAVMLPDAGWLNSCVQAADNDALFRLLRSSAAPIV 285

Query: 94  LVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVK 152
           LV        +       L      +P    +  L++    PL + S N SG+    + +
Sbjct: 286 LVAK-RPEGPLCAAVAPELPEIGIMLPANPLQHLLLQQVARPLVMTSGNGSGKPPALSNQ 344

Query: 153 HILSS 157
             LS+
Sbjct: 345 QALSA 349


>gi|325677304|ref|ZP_08156970.1| hydrogenase maturation protein HypF [Rhodococcus equi ATCC 33707]
 gi|325552001|gb|EGD21697.1| hydrogenase maturation protein HypF [Rhodococcus equi ATCC 33707]
          Length = 792

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 64/175 (36%), Gaps = 26/175 (14%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D + LR A + +  G  +A     V G+       D+ NP A++ L E K RPA  P   
Sbjct: 213 DDDVLRIAQQAIVEGGIVA-----VKGIGGFHLVCDATNPAAVQLLRERKARPA-KPFAV 266

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGP-LTLVLDLLSTTDIHPLSTA-NLKTACFRVP 120
             +DI   ++  S+D +          GP  ++VL    TTD+   + A +L      +P
Sbjct: 267 MAADIRAAREVCSIDDVEA----AALSGPARSIVLLRRRTTDVVAAAVAPSLDDVGILLP 322

Query: 121 CGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 L+              L + S NR G+             +     + +
Sbjct: 323 YAPLHHLLFAPTPGSRVPPPRLLVMTSGNRGGEPLAFTNDDA-RQRLSGIADVFL 376


>gi|305433157|ref|ZP_07402313.1| hydrogenase maturation protein HypF [Campylobacter coli JV20]
 gi|304443858|gb|EFM36515.1| hydrogenase maturation protein HypF [Campylobacter coli JV20]
          Length = 728

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 16/166 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A +   + L  G  +AI      G+       D+ N   I+ L   K RP   P   
Sbjct: 200 DDEAFKTCAKLLKQGKILAIK-----GMGGFHLMCDAFNLEVIKELRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
              D+S  K+   VD     L       P+ ++    + + I P          +  P  
Sbjct: 254 MCRDVSDAKELCFVDEEEEKLLGSIL-APIVILKAKKAFSLIAPDVDKLGIMLAY-TPLH 311

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
               L   +   L   SAN SG+  I +  ++L   +       +D
Sbjct: 312 LL--LFRYFDGVLVATSANLSGESIIKDEDNLLK-KLGNVFDFYLD 354


>gi|52425601|ref|YP_088738.1| HypF protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307653|gb|AAU38153.1| HypF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 770

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 19/174 (10%)

Query: 2   QIMSITD-SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRP 55
           Q   I D   AL +    L+ G  IAI      G+       D+ N   ++ L   K+RP
Sbjct: 199 QHTKIADHEAALIQTLHLLNEGKIIAIK-----GIGGFHLACDATNRQTVQLLRSRKRRP 253

Query: 56  AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
              PL   V D+  +   +     +  L     P    ++L       +  L   +L   
Sbjct: 254 -TKPLAIMVPDLQFLTALSRA--ETKLLTSSAAP---IVLLSKHKVPAVDELIAPHLNEI 307

Query: 116 CFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
              +P    +  L++    PL + SAN SGQ  + + +  +   +       + 
Sbjct: 308 GVMLPSNPLQHLLLKAINKPLVMTSANPSGQPPVLDNESAVK-FLQNLADFYLC 360


>gi|149917179|ref|ZP_01905679.1| putative [NiFe] hydrogenase maturation protein [Plesiocystis
           pacifica SIR-1]
 gi|149822095|gb|EDM81488.1| putative [NiFe] hydrogenase maturation protein [Plesiocystis
           pacifica SIR-1]
          Length = 734

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 22/197 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62
              A+  A E L  G  + +      G+       D+R+  A+  L   K+RP    L  
Sbjct: 185 PEGAIESAAELLRRGQVLGLK-----GVGGFQLLVDARSEAAVETLRARKRRP-HKALAV 238

Query: 63  HVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V+D+    +   +  P +  L      GP+ L+                       +P 
Sbjct: 239 MVADLRAAAELVDLTGPAAAALDSPA--GPIVLLPRRGP--QAAEGVAPGQPRLGLMLPT 294

Query: 122 -GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLES 178
                +L+  +G P+   S N  G+     +     + +      ++  D  I +   +S
Sbjct: 295 TAAHARLLAAFGGPIVATSGNVHGRPMARTLDEA-RAQLTGVADALLVHDRAILRRCDDS 353

Query: 179 TIVNVQCEKKVRILRPG 195
             V    E + R LR G
Sbjct: 354 --VVQVVEGRPRALRLG 368


>gi|15894097|ref|NP_347446.1| hydrogenase maturation factor (hypF) [Clostridium acetobutylicum
           ATCC 824]
 gi|15023699|gb|AAK78786.1|AE007596_7 Hydrogenase maturation factor (hypF) [Clostridium acetobutylicum
           ATCC 824]
 gi|325508224|gb|ADZ19860.1| Hydrogenase maturation factor (hypF) [Clostridium acetobutylicum EA
           2018]
          Length = 762

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 16/192 (8%)

Query: 19  LDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           L  G   AI      GL       D+ N  AI++L + K R    P    V DI   KK+
Sbjct: 210 LKEGKIFAIK-----GLGGFQLVCDAENEEAIKKLRQKKNR-QHKPFAVMVKDIETAKKY 263

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYG 132
            SV+     L K     P+ ++L+  +   I  +     KT    +P      L+     
Sbjct: 264 CSVNYKEEKLLKSK-VKPI-VILNRSNYNKIPKVIAPYQKTLGVMLPYTPLHYLLFSDDI 321

Query: 133 HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS-KIGLESTIVNVQCEKKVRI 191
             L + SAN  G       +  +   +       +       + ++ +IV V   ++  I
Sbjct: 322 EVLIMTSANAHGLPLEYKNESAI-DKLGNIADYFLQHNRDINVPIDDSIVRVVNGQECVI 380

Query: 192 LRPGGLEIETLK 203
            R  G     +K
Sbjct: 381 RRARGYTPNPIK 392


>gi|189347274|ref|YP_001943803.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium limicola DSM
           245]
 gi|189341421|gb|ACD90824.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium limicola DSM
           245]
          Length = 764

 Score = 64.3 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 16/159 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
              +R+A   L AG  +A     V G     LAVD+RN +A++RL + K R    P    
Sbjct: 204 DRVIREASAMLKAGKIVA-----VKGVGGFHLAVDARNGSAVQRLRDQKAR-EEKPFAVM 257

Query: 64  VSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + D++ V++   V    +  L     P    ++L+  +   +  +           +P  
Sbjct: 258 MRDLASVRQICVVGSDEAAALRSAEAP---IMLLEKSAGFPLPEIIAPGNDRLGVMLPYS 314

Query: 123 FTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSIC 160
               L+   G   + + SAN S +  + +    +   + 
Sbjct: 315 PLHALLLEEGPDMVVMTSANCSDEPVLHDDADAVRRLVG 353


>gi|148252077|ref|YP_001236662.1| carbamoyl phosphate phosphatase, (NiFe) hydrogenase maturation
           protein [Bradyrhizobium sp. BTAi1]
 gi|146404250|gb|ABQ32756.1| carbamoyl phosphate phosphatase, (NiFe) Hydrogenase maturation
           protein [Bradyrhizobium sp. BTAi1]
          Length = 824

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A   +  G  +A     V     Y LA D+     + RL  +K+R    P     
Sbjct: 221 DDVDAAMSLIQKGEIVA-----VKALGGYQLACDATRLDTVERLRLLKRREV-KPFALMA 274

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+ ++++  +V P       L  P    ++LD      +       ++   F +P    
Sbjct: 275 RDLDVIRRFCAVSPDEEE--ALCSPAAPIVLLDAAGPERLPEAVAPGMRMLGFMLPSTPL 332

Query: 125 KKLI-ETYGHPLAIPSANRSGQISITNVKHILS 156
             L+      P+ + S N S +           
Sbjct: 333 HVLMFRRMPRPVIMTSGNLSDEPQAIGDAEAAR 365


>gi|150008425|ref|YP_001303168.1| hydrogenase maturation factor [Parabacteroides distasonis ATCC
           8503]
 gi|255014160|ref|ZP_05286286.1| hydrogenase maturation factor [Bacteroides sp. 2_1_7]
 gi|256841591|ref|ZP_05547098.1| NiFe] hydrogenase maturation protein HypF [Parabacteroides sp. D13]
 gi|149936849|gb|ABR43546.1| hydrogenase maturation factor [Parabacteroides distasonis ATCC
           8503]
 gi|256737434|gb|EEU50761.1| NiFe] hydrogenase maturation protein HypF [Parabacteroides sp. D13]
          Length = 760

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 18/177 (10%)

Query: 34  GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           G+       D+ N  A+ RL EIK+R    P      D+  ++ + + +P+      + W
Sbjct: 223 GIGGYHLICDASNERAVARLREIKQRD-TKPFAVMFRDLEHLQVYTATEPMEERCL-VSW 280

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGFTKKLIETYGHP-LAIPSANRSG 144
             P+ L   L   + +       + T       +P  +        G P L + S N S 
Sbjct: 281 RRPIVL---LRQRSRLASGINPGMHTLGCMLSYMPIHY--DWFARTGIPALVMTSGNLSD 335

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRILRPGGLEIE 200
                       + +  ++ +++         ++ +++ V   +   I R  G   E
Sbjct: 336 LPIAIT-PEDAEAQLAGKVAILLHHNRPIHNRVDDSVLQVCGGQPCLIRRSRGYVPE 391


>gi|197120926|ref|YP_002132877.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter sp. K]
 gi|196170775|gb|ACG71748.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter sp. K]
          Length = 773

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 14/194 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ +R     L AG   A     V     Y LA D+  P A+R L E K+R    PL   
Sbjct: 213 ADPIRDCAGLLRAGGIAA-----VKGLGGYHLACDASAPAAVRTLRERKRR-EEKPLAVM 266

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           V+D+   +  A V P    L     P    ++        + P            +    
Sbjct: 267 VADLDAARALAEVSPAEAALLTS--PERPIVLCRRRPGAALAPELAPGSPIVGLMLAYAP 324

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
               L+   G PL + SAN S +    +    L+         ++         + ++  
Sbjct: 325 LHHLLLADAGVPLVMTSANLSDEPIAFDDGEALARLAGIADLFLVHDRPIASRCDDSVAR 384

Query: 183 VQCEKKVRILRPGG 196
           V   + + + R  G
Sbjct: 385 VVAGRPMVMRRSRG 398


>gi|313672690|ref|YP_004050801.1| (nife) hydrogenase maturation protein hypf [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939446|gb|ADR18638.1| (NiFe) hydrogenase maturation protein HypF [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 742

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 19/152 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+++    +D G  +AI      GL       D+RN  AI RL  +KKR    P    V
Sbjct: 193 EAIKECASLVDKGEIVAIK-----GLGGYHLICDARNEEAINRLRRLKKRKV-KPFAVMV 246

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            DI  ++   +         K F+  P+  ++ + +   +    +   K   F       
Sbjct: 247 KDIKYIEDFIT------QELKDFFDSPVAPIVIIDANDLLPSSISPVNKKIGFMKAYTPL 300

Query: 125 KKLIETY--GHPLAIPSANRSGQISITNVKHI 154
            +++  +     L   S N   +  + + K  
Sbjct: 301 HQILFHFLKTDFLIATSGNEKDEPIVIDEKDA 332


>gi|254442114|ref|ZP_05055590.1| (NiFe) hydrogenase maturation protein HypF [Verrucomicrobiae
           bacterium DG1235]
 gi|198256422|gb|EDY80730.1| (NiFe) hydrogenase maturation protein HypF [Verrucomicrobiae
           bacterium DG1235]
          Length = 774

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 17/165 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A   + +G  +A+      G+       D+RN  AI RL + K R    PL   
Sbjct: 211 DEALKMAEHLVSSGHVLALK-----GVGGFQLIVDARNADAIARLRKCKGRGP-KPLAIM 264

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             D+   +    +  L   L       P + ++ L   +         ++     +PC  
Sbjct: 265 CPDLGYTRSICHLSALERKLLLS----PASPIVLLKKRSRAFDAVAPGMRDYGVMLPCSP 320

Query: 124 TKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L+    G+P+   S NRS +      +  +   +       +
Sbjct: 321 LHHLLMRDLGYPIVATSGNRSEEPICIENEEAI-ERLSDIADAFL 364


>gi|156934227|ref|YP_001438143.1| hypothetical protein ESA_02057 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532481|gb|ABU77307.1| hypothetical protein ESA_02057 [Cronobacter sakazakii ATCC BAA-894]
          Length = 748

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D++N  A+ RL   K RP   PL   ++D + +   A         A+L  P    +
Sbjct: 223 LACDAQNADAVARLRVRKHRP-TKPLAVMLTDAAGLPDDAR--------AQLLTPAAPIV 273

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKH 153
           +++      +       L      +P    + L+ +  G PL + S NRSG+        
Sbjct: 274 LVNNAHLPPLCEAIAPGLNETGVMLPANPLQHLLMQGVGRPLVMTSGNRSGEPPALTNAQ 333

Query: 154 ILSS 157
            LS 
Sbjct: 334 ALSQ 337


>gi|296446734|ref|ZP_06888673.1| (NiFe) hydrogenase maturation protein HypF [Methylosinus
           trichosporium OB3b]
 gi|296255737|gb|EFH02825.1| (NiFe) hydrogenase maturation protein HypF [Methylosinus
           trichosporium OB3b]
          Length = 767

 Score = 64.3 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 31/179 (17%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ +      +  G  +A+      G+       D+RN + +  L   K+R A  P    
Sbjct: 213 ASLIADIVATIRDGGIVALK-----GVGGYHLLCDARNESTVAELRRRKQRDA-KPFAVM 266

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V++ +  +     D  SL L +     P+T+V        + P     L      +P   
Sbjct: 267 VANEASARCIGDFDAESLRLLRSTA-RPITVVECR---EPLAPSVAPRLSRIGVMLPYAP 322

Query: 124 TKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L+     G P             +   SAN SG+  I + +      +     L+I
Sbjct: 323 LHHLLFHAAAGAPAGREWREAPQDFIIVATSANVSGEPLIIDDEEA-REKLAPIADLVI 380


>gi|327253114|gb|EGE64768.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli
           STEC_7v]
          Length = 792

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 13/168 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           S+   + ++ A   L  G  +AI  +++ G  L  D+ N  A+  L + K+R A  P   
Sbjct: 211 SVHTDDIVKFAITKLKEGGILAI--KSLGGFHLVADACNENAVNELRQRKRRDA-KPFAV 267

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V+D+    + A + P +  L +   P  P+ L+        +      +       +P 
Sbjct: 268 MVADVESASRIAFIPPCNHKLLES--PQRPIVLLYKR--NVLLASTVAPHNPNIGVMLPS 323

Query: 122 GFTKKLIET-YGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167
              + L+      P+ I  S N SG   + +    +   + K     I
Sbjct: 324 TPLQHLLLEDPSLPILIMTSGNISGHPIVFDNDMAIK-QLGKIADYFI 370


>gi|89895223|ref|YP_518710.1| hydrogenase maturation protein hypF [Desulfitobacterium hafniense
           Y51]
 gi|219669654|ref|YP_002460089.1| (NiFe) hydrogenase maturation protein HypF [Desulfitobacterium
           hafniense DCB-2]
 gi|89334671|dbj|BAE84266.1| hydrogenase maturation protein hypF [Desulfitobacterium hafniense
           Y51]
 gi|219539914|gb|ACL21653.1| (NiFe) hydrogenase maturation protein HypF [Desulfitobacterium
           hafniense DCB-2]
          Length = 758

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 57/151 (37%), Gaps = 18/151 (11%)

Query: 16  CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            E +  G  IAI      GL       D  NPTA++RL + K+R A  P      ++ ++
Sbjct: 200 IEQIARGEIIAIK-----GLGGFHLVCDGGNPTAVQRLRQRKERGA-KPFALMARNLEVI 253

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL-STANLKTACFRVPCGFTKKLIE 129
           +++  V      L K     P+ ++     + ++ P      L T    +P      L+ 
Sbjct: 254 RRYLKVSLKEEELLKSSA-APIVILERKKESGNVLPDELAPGLHTLGVMLPYTPLHALL- 311

Query: 130 TYGHPL---AIPSANRSGQISITNVKHILSS 157
            +        + S N SG+  I   +  +  
Sbjct: 312 -FDGAFDFLVMTSGNLSGRPLIYTNEEAVRE 341


>gi|323968265|gb|EGB63673.1| hydrogenase maturation protein HypF [Escherichia coli M863]
 gi|323977841|gb|EGB72927.1| hydrogenase maturation protein HypF [Escherichia coli TW10509]
          Length = 792

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 13/168 (7%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           S+   + ++ A   L  G  +AI  +++ G  L  D+ N  A+  L + K+R A  P   
Sbjct: 211 SVHTDDIVKFAITKLKEGGILAI--KSLGGFHLVADACNENAVNELRQRKRRDA-KPFAV 267

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V+D+    + A + P +  L +   P  P+ L+        +      +       +P 
Sbjct: 268 MVADVESASRIAFIPPCNHKLLES--PQRPIVLLYKR--NVLLASTVAPHNPNIGVMLPS 323

Query: 122 GFTKKLIET-YGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167
              + L+      P+ I  S N SG   + +    +   + K     I
Sbjct: 324 TPLQHLLLEDPSLPILIMTSGNISGHPIVFDNDMAIK-QLGKIADYFI 370


>gi|317486426|ref|ZP_07945253.1| hydrogenase maturation protein HypF [Bilophila wadsworthia 3_1_6]
 gi|316922336|gb|EFV43595.1| hydrogenase maturation protein HypF [Bilophila wadsworthia 3_1_6]
          Length = 841

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 30/190 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+ +    L AG  +A     V GL       D+ +  AI  L E K RP    L   
Sbjct: 208 QRAIERTAAALRAGNIVA-----VKGLGGFHLVCDATSSEAIALLRERKCRP-HKSLAIM 261

Query: 64  VSDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           V D+   ++ A V D  +  LA    P     ++ L S   + P    ++ +    +P  
Sbjct: 262 VPDLETARRVACVSDAEAAVLASSERP-----IVVLASRGALPPAIAPDVGSIGVMLPYT 316

Query: 122 GFTKKLIETYGH-----PLAIPSANRSGQISITNVKHILSS-------SICKEIPLIIDG 169
                L+E +        L + S N  G+      +  L+         +     ++I  
Sbjct: 317 PLHHLLLEAFAALSPLPALVMTSGNAGGEPISLGNREALARLRHIADLFLFHNRDILIRA 376

Query: 170 GISKIGLEST 179
             S + +ES+
Sbjct: 377 DDSVVRVESS 386


>gi|148656677|ref|YP_001276882.1| (NiFe) hydrogenase maturation protein HypF [Roseiflexus sp. RS-1]
 gi|148568787|gb|ABQ90932.1| (NiFe) hydrogenase maturation protein HypF [Roseiflexus sp. RS-1]
          Length = 776

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 21/156 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           L +A   L  G  +AI      GL       ++ +  A+ RL   K+R A  P      D
Sbjct: 214 LEQAVFALAHGAILAIK-----GLGGYHLACNALDHDAVARLRARKQREA-RPFALMAPD 267

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           ++ +++   V P    L +     P+ ++LD L    + P       T    +P      
Sbjct: 268 LATIRQLCYVKPEEATLLEA-RQRPI-VLLDALPGAPVAPSVAPGYTTLGIMLPYTPLHH 325

Query: 127 LIETYGHP--------LAIPSANRSGQISITNVKHI 154
           L+              L + S N S +         
Sbjct: 326 LLLRAYAAAMPDQPAVLVMTSGNLSDEPIAYRDDDA 361


>gi|312891348|ref|ZP_07750865.1| (NiFe) hydrogenase maturation protein HypF [Mucilaginibacter
           paludis DSM 18603]
 gi|311296042|gb|EFQ73194.1| (NiFe) hydrogenase maturation protein HypF [Mucilaginibacter
           paludis DSM 18603]
          Length = 789

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 57/176 (32%), Gaps = 22/176 (12%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57
           +M     + L K    L  G  IA     V G+       D++    I+ L   K RP+ 
Sbjct: 196 VMLTNVGDILSKVKILLKQGKIIA-----VKGIGGYILLCDAQQNATIKLLRSRKHRPS- 249

Query: 58  NPLICHVSDISMVKKHASVDPLSLHL-----AKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
            P      DI  ++ +  V            A +    P  L    L+   I P     L
Sbjct: 250 KPFAILYPDIKTIQNYFEVSDNEKMFLTSVEAPIVLLHPKRLARRSLAINHIAP----GL 305

Query: 113 KTACFRVPCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 +P      LI   YG PL   SAN SG   I      L+  +      I+
Sbjct: 306 NRLGVMIPYNPLFDLIARDYGKPLIATSANISGSPIIYRDDDALN-YLFDIADYIV 360


>gi|114321166|ref|YP_742849.1| (NiFe) hydrogenase maturation protein HypF [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227560|gb|ABI57359.1| (NiFe) hydrogenase maturation protein HypF [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 773

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 27/214 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + L    + L +G  +AI      GL       D+ NP A+ RL   K+R +  P    V
Sbjct: 209 DVLAATVDRLTSGQILAIK-----GLGGFHLLCDAGNPEAVARLRTRKRR-SEKPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
             I   ++   + P   HL       P+ L     +     P     +      +P    
Sbjct: 263 PGIEAAERLVRLAPGERHLLAGV-DRPILLAGKRPTVDRQLPGVAPGMPWLGVMLPYTPL 321

Query: 125 KKLI--ETYGHPLAI-------------PSANRSGQISITNVKHILSSSICKEIPLIIDG 169
             L+  E  G P+ +              SAN  G+  +T+ +  +         L++  
Sbjct: 322 HYLLFHEAAGRPMGLAWLSGTGQPVWVCTSANPGGEPLVTDNQDAVRRLSGLADALLVHD 381

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
               +  + ++V     + V + R  G+    ++
Sbjct: 382 RDILVRCDDSVVRQAEGRAVYLRRGRGVTPSPIR 415


>gi|291614878|ref|YP_003525035.1| (NiFe) hydrogenase maturation protein HypF [Sideroxydans
           lithotrophicus ES-1]
 gi|291584990|gb|ADE12648.1| (NiFe) hydrogenase maturation protein HypF [Sideroxydans
           lithotrophicus ES-1]
          Length = 767

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 31/220 (14%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +   + +    E + AG  +A     V G+       D+RN  A+ RL   K+R    P
Sbjct: 195 PVAADDPIAATAELIQAGKIVA-----VKGIGGFHLVCDARNAAAVARLRNGKQR-EEKP 248

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               V +    ++ A        L +     P+ L+   L+     P     L +    +
Sbjct: 249 FAVMVLNTLSARQCAQFREKDAALLE-TRERPIVLLRQSLACEAALPGIAPGLSSIGLML 307

Query: 120 PCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIP 164
           P      L+  E  G P             L + SAN  G+  + +       S+     
Sbjct: 308 PYAPLHYLLFHELLGKPEGADWLQQASPWVLVMTSANPGGEPLVKDDAEA-RESLTGLAD 366

Query: 165 LII--DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
             +  D  I     +S ++  Q    + + R  G     +
Sbjct: 367 AFLTHDRDILHRCDDS-VMKWQGSAPIFLRRARGYTPRRI 405


>gi|123443788|ref|YP_001007759.1| hydrogenase maturation protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090749|emb|CAL13626.1| hydrogenase maturation protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 758

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 2/124 (1%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LAVD+ N  A+ RL E K RP+  PL   + D   ++   S    +  L  L  P    +
Sbjct: 227 LAVDATNAAAVARLRERKHRPS-KPLAVMLPDADWLQSCVSSADHTALLGLLRSPAAPIV 285

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++     + +       L      +P       L++    PL + S N  G+    + + 
Sbjct: 286 LVAKQPESPLCAAVAPELPEIGVMLPATPLQHLLLQQVARPLVMTSGNGRGKPPALSNQQ 345

Query: 154 ILSS 157
            LS+
Sbjct: 346 ALSA 349


>gi|307257396|ref|ZP_07539166.1| hypothetical protein appser10_13940 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864246|gb|EFM96159.1| hypothetical protein appser10_13940 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 765

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A E L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILEAVEKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRHRKVRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            ++  + + A  + L L  +      P+ ++L       +H L   +L      +P    
Sbjct: 263 PNLDWLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317

Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+      PL + SANRSG     N +  L S
Sbjct: 318 QHLLMHEVNMPLVMTSANRSGLPPALNNQDALDS 351


>gi|258543871|ref|ZP_05704105.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258520877|gb|EEV89736.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 258

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 24/197 (12%)

Query: 22  GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSL 81
           G  I  PT+  Y +   + +   + R ++ K+R    P +     +  ++  A ++P   
Sbjct: 23  GGVIVCPTKVGYII--MATDKAGLERKFDAKERKRNKPGVVLCGSMEQLRALAQMNPEIE 80

Query: 82  HLAKLFWPGPLTL--VLDLLSTTDIH-------PLSTANLKTACFRVPCGF-----TKKL 127
              +  W   + L  +L   +             L      T+CF +  G       + L
Sbjct: 81  AFYQKHWDADILLGCILPWRADAKAALPQDGRDELMMDGRGTSCFVIKFGVPGEQLAEHL 140

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
             T G  +   SAN SG+ +   V+  +   I  ++ L+I+       + S    +Q +K
Sbjct: 141 WRTEGKMIYASSANPSGKGNRGKVEG-IGERIASKVDLVIEADDY---VAS----IQPDK 192

Query: 188 KVRILRPGGLEIETLKR 204
            V      G+ +  + +
Sbjct: 193 TVETRYEQGVMVSMVDK 209


>gi|307246250|ref|ZP_07528331.1| hypothetical protein appser1_14540 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255234|ref|ZP_07537049.1| hypothetical protein appser9_14690 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259668|ref|ZP_07541392.1| hypothetical protein appser11_14660 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852859|gb|EFM85083.1| hypothetical protein appser1_14540 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861783|gb|EFM93762.1| hypothetical protein appser9_14690 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866313|gb|EFM98177.1| hypothetical protein appser11_14660 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 761

 Score = 63.9 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A E L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILEAVEKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRHRKVRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            ++  + + A  + L L  +      P+ ++L       +H L   +L      +P    
Sbjct: 263 PNLDWLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317

Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+      PL + SANRSG     N +  L S
Sbjct: 318 QHLLMHEVNMPLVMTSANRSGLPPALNNQDALDS 351


>gi|317154067|ref|YP_004122115.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944318|gb|ADU63369.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 775

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 25/210 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+R   E L  G   A     V GL       D+ +  A+  L   K RP   PL   
Sbjct: 204 DEAIRMLAEALAQGRLAA-----VKGLGGFHLVCDAASDKAVAELRRRKHRP-DKPLAVM 257

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--- 120
           ++D+  V++ A V P            P+ L         + PL   +       +P   
Sbjct: 258 LADLEAVRQLAVVVPAEEPWLTGIR-RPIVLAAKREP-LAVSPLIAPDTNFLGVMLPYTP 315

Query: 121 -CGFTKKLIETYGH----PLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISK 173
                       G      L + S N S +      +  L + + +   L +  D  I  
Sbjct: 316 LHHILLDTFAQAGGSEIPALVMTSGNLSSEPIALGNREAL-ARLGELADLFLLHDRDILI 374

Query: 174 IGLESTI-VNVQCEKKVRILRPGGLEIETL 202
              +S + VN      V + R  G   E +
Sbjct: 375 RTDDSVVRVNPASGGPVLLRRARGFAPEPV 404


>gi|262383260|ref|ZP_06076396.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 2_1_33B]
 gi|301309315|ref|ZP_07215257.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 20_3]
 gi|262294158|gb|EEY82090.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 2_1_33B]
 gi|300832404|gb|EFK63032.1| Ni/Fe hydrogenase maturation protein HypF [Bacteroides sp. 20_3]
          Length = 760

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 18/177 (10%)

Query: 34  GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           G+       D+ N  A+ RL EIK+R    P      D+  ++ +   +P+      + W
Sbjct: 223 GIGGYHLICDASNERAVARLREIKQRD-TKPFAVMFRDLEHLQVYTVTEPMEERCL-VSW 280

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGFTKKLIETYGHP-LAIPSANRSG 144
             P+ L   L   + +       + T       +P  +        G P L + S N S 
Sbjct: 281 RRPIVL---LRQRSRLASGINPGMHTLGCMLSYMPIHY--DWFARTGIPALVMTSGNLSD 335

Query: 145 QISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRILRPGGLEIE 200
                       + +  ++ +++         ++ +++ V   +   I R  G   E
Sbjct: 336 LPIAIT-PEDAEAQLAGKVAILLHHNRPIHNRVDDSVLQVCGGQPCLIRRSRGYVPE 391


>gi|222823796|ref|YP_002575370.1| transcriptional regulatory protein HypF [Campylobacter lari RM2100]
 gi|222539018|gb|ACM64119.1| transcriptional regulatory protein HypF [Campylobacter lari RM2100]
          Length = 732

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 57/169 (33%), Gaps = 22/169 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A     + L+ G  IA       G+       DS N  AI  L   K RP   P   
Sbjct: 201 DEKAFILLAKLLEEGKIIAFK-----GMGGFHLICDSTNKNAINELRIRKNRP-KKPFAI 254

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---V 119
            V D+ M ++ A ++     L       P+ +    L++ +IH     +          +
Sbjct: 255 MVKDLKMAQELAFINEAEAKLLTSNL-KPIVI----LNSKNIHKSLAPDTNKIGIMLAYM 309

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                  L E +  P+   SAN S Q  I     +L   +       +D
Sbjct: 310 GTHLM--LFEHFKKPIIATSANLSSQSIIYEETKLL-EQLSDVFDFYLD 355


>gi|320353848|ref|YP_004195187.1| (NiFe) hydrogenase maturation protein HypF [Desulfobulbus
           propionicus DSM 2032]
 gi|320122350|gb|ADW17896.1| (NiFe) hydrogenase maturation protein HypF [Desulfobulbus
           propionicus DSM 2032]
          Length = 773

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 21  AGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            G  +AI      GL       D  +  A+  L   K RPA  PL   + D+   ++ A 
Sbjct: 222 EGGVVAIK-----GLGGFHLAVDGCSEEAVALLRTRKNRPA-KPLAIMIRDLETAERFAW 275

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHP 134
           +      L     P    +++D  S + +       L      +P       L++  G P
Sbjct: 276 LSEQDKALLTS--PEHPIVLMDRRSGSPLAEGVAPGLGAIGLMLPYTPLHHLLLDQPGIP 333

Query: 135 --LAIPSANRSGQISITNVKHILS 156
             L + S NRS +   T     L 
Sbjct: 334 EALVMTSGNRSDEPICTGNDEALR 357


>gi|332162867|ref|YP_004299444.1| hydrogenase maturation protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667097|gb|ADZ43741.1| hydrogenase maturation protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 758

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LAVD+ N  A+ RL E K RP+  PL   + D   ++   S    +  L  L  P    +
Sbjct: 227 LAVDATNAVAVARLRERKHRPS-KPLAVMLPDADWLQSCVSSADHTALLGLLRSPAAPIV 285

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKH 153
           ++     + +       L      +P    +  L++    PL + S N  G+    + + 
Sbjct: 286 LVAKQPESPLCVAVAPELPEIGVMLPANPLQHLLLQQVARPLVMTSGNGRGKPPALSNQQ 345

Query: 154 ILSS 157
            LS+
Sbjct: 346 ALSA 349


>gi|227115209|ref|ZP_03828865.1| hypothetical protein PcarbP_19720 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 259

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 18/173 (10%)

Query: 13  RKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
             A + +   G  I  PT+  Y +     +   + R ++ K+R    P +     I+ +K
Sbjct: 14  DDAVQIMSHDGGIIVSPTKVGYIIMAS--DKAGLERKFDAKQRSRSKPGVVLCGSIAQLK 71

Query: 72  KHASVDPLSLHLAKLFWPGP--LTLVLDLLSTTDIH-------PLSTANLKTACFRV--- 119
             A ++P    L +  W     L  +L    +  +         L   + KT+CF +   
Sbjct: 72  ALAQLNPEIEQLYQRHWDADVLLGCILPWHDSALVRIPKDGSKALMMDDRKTSCFVIKFG 131

Query: 120 -PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            P    T++L E YG      SAN SG+ +   V+  +   I     LII+  
Sbjct: 132 TPSEILTQELWEKYGKLTFASSANPSGKGNRGEVEG-IGERISAFADLIIEAD 183


>gi|254281722|ref|ZP_04956690.1| (NiFe) hydrogenase maturation protein HypF [gamma proteobacterium
           NOR51-B]
 gi|219677925|gb|EED34274.1| (NiFe) hydrogenase maturation protein HypF [gamma proteobacterium
           NOR51-B]
          Length = 771

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 15/164 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
            AL  A   + +G   A     V GL       D+RN  A+R L   K+RP   P    V
Sbjct: 212 EALDGAAAIIRSGGIAA-----VKGLGGFHLLTDARNAEAVRTLRSRKRRP-NKPFALMV 265

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
             + + +    V+     L       P+ ++L   + T +       L      +P    
Sbjct: 266 PSLEVAEHLCFVNADEKSLLASS-EAPI-VLLRQRAVTGVTEDVAPGLCELGLMLPYTPL 323

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L+   G P+ + SAN SG+  + N    L + +     + +
Sbjct: 324 HHLLLHRLGFPIVVTSANLSGEPIVANEDEAL-ARLGHLADVFL 366


>gi|307261816|ref|ZP_07543481.1| hypothetical protein appser12_13760 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868480|gb|EFN00292.1| hypothetical protein appser12_13760 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 351

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A E L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILEAVEKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRHRKVRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            ++  + + A  + L L  +      P+ ++L       +H L   +L      +P    
Sbjct: 263 PNLDWLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317

Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+      PL + SANRSG     N +  L S
Sbjct: 318 QHLLMHEVNMPLVMTSANRSGLPPALNNQDALDS 351


>gi|332308822|ref|YP_004436672.1| (NiFe) hydrogenase maturation protein HypF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332176151|gb|AEE25404.1| (NiFe) hydrogenase maturation protein HypF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 769

 Score = 63.5 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 15/159 (9%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           ++++  D + +      L+ G  I +  ++V  Y L  D++N  A+  L   K RP   P
Sbjct: 209 RVIAQGDDDVVTAVVGCLNQGAIIVL--KSVGGYHLICDAQNTEAVDLLRRRKNRP-DKP 265

Query: 60  LICH-------VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
                      V   S +     V+     L       P+ L+        I       L
Sbjct: 266 FAVMLPEPQSDVPGQSWLDNCVVVNSQDKALLSSSI-RPI-LLAPKKRNAPIAENVAPML 323

Query: 113 KTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQISITN 150
                 +PC G    L++ +  P+   S N  G+  +T+
Sbjct: 324 SDLGVMLPCSGLHLMLMKQFNRPMIATSGNEYGEPMVTS 362


>gi|251792886|ref|YP_003007612.1| [NiFe] hydrogenase maturation protein HypF [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534279|gb|ACS97525.1| [NiFe] hydrogenase maturation protein HypF [Aggregatibacter
           aphrophilus NJ8700]
          Length = 762

 Score = 63.5 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 80/222 (36%), Gaps = 28/222 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           I    A++     L  G  IAI      G+       D+ NP  ++ L + K+RP+  PL
Sbjct: 199 IDKKTAIKTTALLLHEGHIIAIK-----GIGGFHLACDAANPVVVQLLRDRKRRPS-KPL 252

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              V +++++            L     P    ++L       +       L      +P
Sbjct: 253 AVMVPNLNVLTDLTE--QEIEQLTSTAAP---IVLLPKHKAPPLAEQIAPKLNEIGVMLP 307

Query: 121 CGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
               +  L++     L + SAN SGQ  + + +  +  ++       +            
Sbjct: 308 SNPLQHLLLKEADRTLVMTSANPSGQPPVLDNQSAV-ENLSDLADYFLCHNRD------- 359

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQ 221
           I+    +  VR+   G   +ETL+RA     +  + +  +P+
Sbjct: 360 ILQRADDSLVRLAFDG---VETLRRARGYVPDETLLDHHSPR 398


>gi|260891194|ref|ZP_05902457.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia hofstadii F0254]
 gi|260859221|gb|EEX73721.1| Sua5/YciO/YrdC/YwlC family protein [Leptotrichia hofstadii F0254]
          Length = 50

 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 10 NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK 53
          N +  A   L  G     PT+TVYG+    +    + ++Y+IKK
Sbjct: 2  NKIENAVRILKNGGVAIFPTDTVYGIGTLPK-KEYMEKIYKIKK 44


>gi|326204071|ref|ZP_08193932.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           papyrosolvens DSM 2782]
 gi|325985838|gb|EGD46673.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           papyrosolvens DSM 2782]
          Length = 790

 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 17/160 (10%)

Query: 16  CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +  G  +AI      G+       D  N  A+ RL   K R    P      D+   
Sbjct: 210 ADMIKRGYIVAIK-----GIGGYHLACDGLNKEAVERLRCRKHRD-DKPFAVMAKDLKTA 263

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-E 129
           +K+ ++      +     P    ++L+ +    +        +     +P      L+ E
Sbjct: 264 EKYCAISTAETKILNS--PASPIVLLERIDGDILPDAIAHLNRYLGVMLPYTPVHHLLFE 321

Query: 130 TYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             G P  L + S N S +      +  +   +       +
Sbjct: 322 EEGFPELLVMTSGNLSSEPIFYRDEEAM-EGLQGIADAYL 360


>gi|90407587|ref|ZP_01215768.1| hydrogenase maturation protein HypF [Psychromonas sp. CNPT3]
 gi|90311290|gb|EAS39394.1| hydrogenase maturation protein HypF [Psychromonas sp. CNPT3]
          Length = 842

 Score = 63.2 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 59/176 (33%), Gaps = 32/176 (18%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
            L+KA   + AG  IAI      G+       D+ N  A+ +L   K RP   PL   V 
Sbjct: 227 VLQKAASAIRAGKIIAIK-----GIGGFHLVCDASNQKAVNKLRISKNRPL-KPLAIMVK 280

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT------------DIHPLSTANLK 113
           D +  + +         L       P+TL+    + +            D+      N+ 
Sbjct: 281 DRTQAQHYVQGGEAEWALLGS-QQRPITLLQKHDALSLQSVSNKHNKILDLASNIAENVP 339

Query: 114 TACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQIS-------ITNVKHILSSSICK 161
                +P      L+ +     L   SAN SGQ          T  +H ++  I  
Sbjct: 340 YLGIMLPYTPLHYLLFDHIESALVFTSANYSGQPILIEGDDVATKFQHCIAGFIDH 395


>gi|261368113|ref|ZP_05980996.1| [NiFe] hydrogenase maturation protein HypF [Subdoligranulum
           variabile DSM 15176]
 gi|282569870|gb|EFB75405.1| [NiFe] hydrogenase maturation protein HypF [Subdoligranulum
           variabile DSM 15176]
          Length = 634

 Score = 63.2 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 17/156 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A + L AG  +A     V G     LA  + +P A+ RL   K RP   PL    
Sbjct: 86  DPIALAQKALAAGKIVA-----VKGTGGIHLACRADSPDAVARLRRRKHRPE-KPLALMA 139

Query: 65  SDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            D+S   +          L +   P  P+ L+     T      +T  L       P   
Sbjct: 140 RDLSTAARFCRYTEEEAALLQS--PRRPILLLAKKDPTGQTWLSATTRLGVMLPYTPLHI 197

Query: 124 TKKLIETYGHP--LAIPSANRSGQISITNVKHILSS 157
              L  T+G P  L + SANRSG   + + +  +S+
Sbjct: 198 LL-LDGTFGGPDLLVMTSANRSGCPVLLDNEDAVSA 232


>gi|146296555|ref|YP_001180326.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410131|gb|ABP67135.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 757

 Score = 63.2 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 18/173 (10%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPA 56
           + +  ++   L + C  ++ G  IAI      G+       D  N  ++ RL+  K R  
Sbjct: 197 KHIDGSNLELLDRVCYEIEKGKIIAIK-----GIGGFHLVVDPYNKESVERLFRSKNR-E 250

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             PL     DI  VKK+  V      +       P   ++     TD      A L T  
Sbjct: 251 GKPLALVCKDIETVKKYCDVSEAEEEIFNS----PRCPIILFERKTDHFLHVNAGLHTLG 306

Query: 117 FRVPCGFTKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                      I T  +   L   SAN SG   I +    L   +C     ++
Sbjct: 307 IMRAYTPILDYILTKTNRDLLIATSANLSGIPMIIDEDEAL-EKLCDIADFVL 358


>gi|89074830|ref|ZP_01161284.1| hydrogenase maturation protein HypF [Photobacterium sp. SKA34]
 gi|89049405|gb|EAR54967.1| hydrogenase maturation protein HypF [Photobacterium sp. SKA34]
          Length = 796

 Score = 63.2 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 53/183 (28%), Gaps = 28/183 (15%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
            T   A+ +  + +  G  +AI      G+       D+ N  A+  L  +K R    PL
Sbjct: 213 ATKQTAIEQLAQKIKDGEIVAIK-----GIGGFHLMCDATNAQAVASLRRLKHR-QSKPL 266

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---------IHPLSTAN 111
               +   +  +                  P+ L+   +             +      N
Sbjct: 267 AIMAASDDITHQLVEGSDAEWEALYAQA-RPIVLMKKRIDVAAEEVTRTDGVLAENVAPN 325

Query: 112 LKTACFRVPCGFTKKLIE------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
           +       P      L+            L + SAN SG    T +  +  +    +I  
Sbjct: 326 VPYLGIMQPYTPLHYLLFDKLKEIDATSALVMTSANLSGMPIATELAQVC-AQFSGKISG 384

Query: 166 IID 168
           ++D
Sbjct: 385 VLD 387


>gi|116623302|ref|YP_825458.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226464|gb|ABJ85173.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 725

 Score = 62.8 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 8/136 (5%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K+R +  P    V D+   ++   VD ++        P    +
Sbjct: 213 LACDARNSAAVDALRARKRR-SDKPFALMVRDLDAARELCVVDHVAARALTG--PRHPIV 269

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI---PSANRSGQISITNV 151
           +L       +         T    +P      L+   G P +     S N S +  +   
Sbjct: 270 ILLRRDGVPLPGAVAPGNPTLGIMLPYTPLHHLL-FAGAPFSALVMTSGNLSEEPIVVEN 328

Query: 152 KHILSSSICKEIPLII 167
                  +       +
Sbjct: 329 ADA-RQRLGPVSDWQL 343


>gi|298527912|ref|ZP_07015316.1| (NiFe) hydrogenase maturation protein HypF [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511564|gb|EFI35466.1| (NiFe) hydrogenase maturation protein HypF [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 768

 Score = 62.8 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 23/170 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           L+K+   L  G  +AI      GL       D+ +  A+R L   K RP   PL   V D
Sbjct: 204 LKKSAYLLKQGNILAIK-----GLGGFHLACDAADQEAVRELRRRKNRP-HKPLAVMVPD 257

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR---VPCGF 123
           I+   + A + PL   + +   P    L +  +    + P    +           P   
Sbjct: 258 IAAAVELAELSPLEAEILQS--PSSPILAVKPIQPCPLSPELAPDTDLLGIMLAYTPLHL 315

Query: 124 TK-----KLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                   L+     P L + S N + +      +  L   + +     +
Sbjct: 316 VLFEHFKALLTRQEIPALVMTSGNMNSEPISLGNREALG-RLGQIADYFL 364


>gi|212223432|ref|YP_002306668.1| hydrogenase maturation protein HypF [Thermococcus onnurineus NA1]
 gi|212008389|gb|ACJ15771.1| hydrogenase maturation protein HypF [Thermococcus onnurineus NA1]
          Length = 813

 Score = 62.8 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 15/201 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + L+KA E +D G  +AI      G+       D+     +  L +   RP   P     
Sbjct: 244 DPLKKAAELIDNGYIVAIK-----GIGGIHLACDATREDVVAELRKRIHRPQ-KPFAIMA 297

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+  +++ A + P  L   K +   P+ + L       +       L T    +P   T
Sbjct: 298 KDVETIEEFAFISPEELEELKSYR-RPI-MTLRKKEPFPLPENLAPGLHTIGVMLPYAGT 355

Query: 125 KKLIETYGH-PL-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++  Y   P+  + SAN  G   + + +             ++         + ++V 
Sbjct: 356 HYILFHYSKTPVYVMTSANYPGMPMVKDNERAFEELKDVADYFLLHNRKILNRADDSVVR 415

Query: 183 VQCEKKVRILRPGGLEIETLK 203
               ++  I R  G     ++
Sbjct: 416 FVNGRRAVIRRSRGFVPLPIE 436


>gi|194334448|ref|YP_002016308.1| (NiFe) hydrogenase maturation protein HypF [Prosthecochloris
           aestuarii DSM 271]
 gi|194312266|gb|ACF46661.1| (NiFe) hydrogenase maturation protein HypF [Prosthecochloris
           aestuarii DSM 271]
          Length = 778

 Score = 62.8 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 22/199 (11%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNP 59
            I   + L  A + L  G  +A     V G     LAVD+ + +A+  L E K R    P
Sbjct: 212 PINAPDPLSLALQKLKDGDIVA-----VKGVGGFHLAVDATDQSAVMNLRERKGRER-KP 265

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                  +   +K A V      +A      P+ L+    S + + P            +
Sbjct: 266 FAVMARSLGSAEKVAQVSDE-ERVALRSLQAPVVLMHKKASASLLAPDVAPANDRIGLML 324

Query: 120 PCGFTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           P      L+   G   L + SAN S +         +S  +       +           
Sbjct: 325 PYSPLHVLMMEEGPEFLVMTSANSSEEPIALENDEAVS-RLQGIADYFLVHNRP------ 377

Query: 179 TIVNVQCEKKVRILRPGGL 197
             ++++C+  V ++  G L
Sbjct: 378 --IHLRCDDSVTMVMSGAL 394


>gi|161502112|ref|YP_001569224.1| hydrogenase maturation protein [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863459|gb|ABX20082.1| hypothetical protein SARI_00129 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 746

 Score = 62.8 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 53/144 (36%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN +A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLVCDARNNSAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D  S   +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQSVPSLCEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGRPPAITNEQALDD 340


>gi|319441540|ref|ZP_07990696.1| putative translation factor (SUA5) [Corynebacterium variabile DSM
           44702]
          Length = 259

 Score = 62.8 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 25/223 (11%)

Query: 13  RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            +A E L   G  +  PT+  Y +A    +   + R + +K R    P +     I  +K
Sbjct: 14  EEAVELLRTPGHIVVTPTKVGYIIATS--DREGLERKFAVKHRKRNKPGVVLCGSIEQLK 71

Query: 72  KHASVDPLSLHLAKLFWPGPL--TLVLDLLSTT-------DIHPLSTANLKTACFR---- 118
           + A + P      +      +    +L                 L+T    T+CF     
Sbjct: 72  ELAQLTPEIEKFYQTCVDRDILMGCILPWKEGAQEKYLPEGASELATDVRGTSCFVLKFG 131

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
           VP     ++L E     +   SAN SG+ +   V+  +   I  E  L+I+G        
Sbjct: 132 VPGENIARELWEKDRRLVFASSANPSGKGNRGLVEG-IGDEIANEADLVIEGD------- 183

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220
           S + ++Q +K +      G+ +  +    ++  E   +   TP
Sbjct: 184 SYVASIQPDKSIETRYEQGVMVSMVDADGTIVPEQHGERGITP 226


>gi|148264007|ref|YP_001230713.1| (NiFe) hydrogenase maturation protein HypF [Geobacter
           uraniireducens Rf4]
 gi|146397507|gb|ABQ26140.1| (NiFe) hydrogenase maturation protein HypF [Geobacter
           uraniireducens Rf4]
          Length = 756

 Score = 62.8 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 64/197 (32%), Gaps = 18/197 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D + L +A   L  G  +A     V     Y LAVD+ N TA+  L   KKR    P   
Sbjct: 199 DCDPLDEAVHLLKEGRILA-----VKGIGGYHLAVDACNETAVAELRRRKKRDE-KPFAL 252

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V+    V+  A  D   + L     P    ++L       I              +P  
Sbjct: 253 MVAGPEQVEVLAHADQTEMRLLTG--PERPIVLLGKRDGNPIARRVAPANGYFGVMLPST 310

Query: 123 FTKKLIETYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES--T 179
               L+ T     L + S N S +  +      L   +       +     KI   S  +
Sbjct: 311 PLHHLLLTDNFAALVMTSGNASDEPIVYRDADAL-EQLADIADYFLVHDR-KIHSRSDDS 368

Query: 180 IVNVQCEKKVRILRPGG 196
           ++ V     + + R  G
Sbjct: 369 VIRVFRGNPLFLRRSRG 385


>gi|290968119|ref|ZP_06559664.1| carbamoyltransferase HypF [Megasphaera genomosp. type_1 str. 28L]
 gi|290781794|gb|EFD94377.1| carbamoyltransferase HypF [Megasphaera genomosp. type_1 str. 28L]
          Length = 765

 Score = 62.4 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 19/186 (10%)

Query: 22  GLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASV 76
           G  IA     V GL       D+ + TA  RL  +K RP   P    + D S VK    +
Sbjct: 208 GKIIA-----VKGLGGFHLCCDATDETATARLRTLKHRPV-KPFAVMMRDSSAVKNACYI 261

Query: 77  DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG---- 132
                 + +  +  P+ ++L   + + + P    +       +P      L+ TY     
Sbjct: 262 TDKQQEVLEG-YQKPI-MLLKRRTDSWLAPSVAPHNPQVGVFLPYTPLHMLLFTYDDGVQ 319

Query: 133 --HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
               L + SAN SG       + I    +     ++      ++  + ++++    +   
Sbjct: 320 VPPALVMTSANVSGAPICRTEEDIRQEMLSCCDLVLSHDRKIRLRADDSVMDWYDNRPYM 379

Query: 191 ILRPGG 196
           I R  G
Sbjct: 380 IRRSRG 385


>gi|218779858|ref|YP_002431176.1| (NiFe) hydrogenase maturation protein HypF [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761242|gb|ACL03708.1| Putative uncharacterized protein containing HypF domain
           [Desulfatibacillum alkenivorans AK-01]
          Length = 757

 Score = 62.4 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 25/217 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           N L +A E L  G  +AI      GL       D+ N  A+  L   K R    PL   V
Sbjct: 204 NPLARAGELLKQGRILAIK-----GLGGFHLAADAGNSQAVSLLRRRKLR-EEKPLAVMV 257

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+   ++ A V P    L   F   P+ ++L   +   + P    + +     +P    
Sbjct: 258 LDVDAARELAEVGPEEEALLMGFR-RPI-VLLKKRAPEALAPEVAPSNRNLGVMLPYTPM 315

Query: 125 K-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L++   + L + S N S +    + +  L+  +       +             + +
Sbjct: 316 HYVLMQHSPNALVMTSGNLSEEPICIDNQDALN-RLGNIADFFLVHNRD--------IYL 366

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220
           + +  +  +R G  E   ++R+          +   P
Sbjct: 367 RSDDSI--VRRGAGETRFIRRSRGYVPTPVFLKNKAP 401


>gi|227329146|ref|ZP_03833170.1| hypothetical protein PcarcW_18150 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 259

 Score = 62.4 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 18/173 (10%)

Query: 13  RKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
             A + +   G  I  PT+  Y +     +   + R ++ K+R    P +     I+ +K
Sbjct: 14  DDAVQIMSHGGGIIVSPTKVGYIIMAS--DKAGLERKFDAKQRNRNKPGVVLCGSIAQLK 71

Query: 72  KHASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV--- 119
             A ++P    L +  W     L  +L                 L   + KT+CF +   
Sbjct: 72  VLAQLNPEIEQLYQRHWDTDVLLGCILPWHDSALARIPKDGSKALMMDDRKTSCFVIKFG 131

Query: 120 -PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            P    T++L E YG      SAN SG+ +   V+  +   I     LII+  
Sbjct: 132 KPSEILTQELWERYGKLTFASSANPSGKGNRGEVEG-IGERISAFADLIIEAD 183


>gi|119871725|ref|YP_929732.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum islandicum
           DSM 4184]
 gi|119673133|gb|ABL87389.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum islandicum
           DSM 4184]
          Length = 748

 Score = 62.4 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 19/195 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +A   ++ G  +A     V G+        + +   + +L + KKRP   P     
Sbjct: 203 DPISEASRLINEGYIVA-----VKGVGGFHIFALASDDDVVAKLRKRKKRP-TQPFAIMA 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D+    + A V+  +  L     P    ++L     +   PL +  L      +P    
Sbjct: 257 LDLETAGRLAVVNKTAAELLTS--PQRPIVLLFKREDSPASPLVSPGLDKEGIFLPYTAL 314

Query: 125 KKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181
           + L+  E         S N  G+   T+ + +           I+D  +  +  ++ ++V
Sbjct: 315 QYLLLSEIRDKFAIATSGNIHGEPMCTDWRCVAK---LGVADYILDHTLEIVHRVDDSVV 371

Query: 182 NVQCEKKVRILRPGG 196
                +   + R  G
Sbjct: 372 RFTAGRPTLLRRGRG 386


>gi|313893328|ref|ZP_07826902.1| carbamoyltransferase HypF [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442097|gb|EFR60515.1| carbamoyltransferase HypF [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 760

 Score = 62.4 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 9/190 (4%)

Query: 17  EFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           E ++ G  IAI  + V  Y L  D+RN   ++RL + K RP   PL   V  +    +  
Sbjct: 215 ELINEGSIIAI--KGVGGYHLVCDARNDAVVQRLRKRKNRP-HKPLAIMVGSLDTAIELV 271

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLL-STTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
            +  + L +       P+ L+     S+  +      +       +P     +++     
Sbjct: 272 QISDVELDVLTG-MERPIVLLERNHNSSVRLSSHVAPDNHMLGVMLPYTPMHEVLLPSDA 330

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192
              + S NRSG   + N     +  + +     +         L+ ++V V   K   I 
Sbjct: 331 AWVMTSGNRSGDPVLYNDDQAFNE-LGEVADYFLVHNREIYAPLDDSVVMVINNKPRFIR 389

Query: 193 RPGGLEIETL 202
           R  G   E +
Sbjct: 390 RSRGYVPEPI 399


>gi|310765469|gb|ADP10419.1| putative translation factor [Erwinia sp. Ejp617]
          Length = 259

 Score = 62.4 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 14  KACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A E L   G  I  PT+  Y +     +   + R ++ K+R    P +     +  +K+
Sbjct: 15  EAVEILSANGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72

Query: 73  HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFR----V 119
            A ++P    L +  W     L  +L                 L     +T+CF     V
Sbjct: 73  LAQLNPEIEALYQQHWDKDVLLGCILPWKEEAVARIPDDGSKELMMDRRQTSCFVIKFGV 132

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           P     K L E +G      SAN SG+ +   V+  +   I +   LII
Sbjct: 133 PGENLAKALWENHGKFSFASSANPSGKGNRGLVEG-IGERIEQHADLII 180


>gi|188535172|ref|YP_001908969.1| hypothetical protein ETA_30540 [Erwinia tasmaniensis Et1/99]
 gi|188030214|emb|CAO98100.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99]
          Length = 259

 Score = 62.4 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 18/169 (10%)

Query: 14  KACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A E L   G  I  PT+  Y +     +   + R ++ K+R    P +     +  +K+
Sbjct: 15  EAVEILSANGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72

Query: 73  HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFR----V 119
            A ++P    L +  W     L  +L                 L     +T+CF     V
Sbjct: 73  LAQLNPEIEALYQQHWDKDVLLGCILPWKEEAVARIPDDGSKELMMDRRQTSCFVIKFGV 132

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           P     K+L E +G      SAN SG+ +   V+  +   I +   LII
Sbjct: 133 PGENLAKELWENHGKFSFASSANPSGKGNRGLVEG-IGERIEQHADLII 180


>gi|154495337|ref|ZP_02034342.1| hypothetical protein PARMER_04394 [Parabacteroides merdae ATCC
           43184]
 gi|154085261|gb|EDN84306.1| hypothetical protein PARMER_04394 [Parabacteroides merdae ATCC
           43184]
          Length = 622

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 11/140 (7%)

Query: 34  GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           G+       D+R+  A+ RL +IK+R    P      DI  ++++          A L W
Sbjct: 228 GIGGYHLICDARSEKAVSRLRDIKQRD-GMPFAVLFRDIENIRRYV-FSNGVEEKALLSW 285

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIETYGHPLAIPSANRSGQIS 147
             P+ L+  L     +       ++T    +P         E    P  + ++    +  
Sbjct: 286 RRPIVLLKQLR---LLASSVNPGMETLGCMLPYMPLHSDWFERLDTPALVMTSGNISECP 342

Query: 148 ITNVKHILSSSICKEIPLII 167
           IT         +  +IPL++
Sbjct: 343 ITITPEEAEKQLAGKIPLLL 362


>gi|312137441|ref|YP_004004778.1| (nife) hydrogenase maturation protein hypf [Methanothermus fervidus
           DSM 2088]
 gi|311225160|gb|ADP78016.1| (NiFe) hydrogenase maturation protein HypF [Methanothermus fervidus
           DSM 2088]
          Length = 758

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 25/204 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + +++  + LD G  +AI      G+       D+ +   +++L +   RP+  P  C 
Sbjct: 195 DDPIKETAKLLDEGYIVAIK-----GIGGAHIACDATDEDVVKKLRKRLNRPS-QPFACM 248

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120
             DI  +KK A V+      L     P    +VL       I    +  L T    +P  
Sbjct: 249 SKDIDTIKKFAIVNENEKETLLSKSRP---IVVLKKKEDCAIANSVSPGLHTIGVMLPYS 305

Query: 121 --CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGL 176
                  K ++       + SAN+ G   +   + I+   +       +  D  I     
Sbjct: 306 GLHHILFKYLKK--EAYVMTSANKPGMPMLIKNRDIIK-KLNGIADYFLLHDRKIINRCD 362

Query: 177 ESTIVNVQCEKKVRILRPGGLEIE 200
           +S ++  +  KK  + R  G   E
Sbjct: 363 DS-VIRFRGGKKAFLRRSRGYAPE 385


>gi|299139669|ref|ZP_07032842.1| (NiFe) hydrogenase maturation protein HypF [Acidobacterium sp.
           MP5ACTX8]
 gi|298598293|gb|EFI54458.1| (NiFe) hydrogenase maturation protein HypF [Acidobacterium sp.
           MP5ACTX8]
          Length = 787

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 27/217 (12%)

Query: 5   SITDSNAL---RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56
           S TD++AL     A   L  G  +A     V GL       D+ N TA+  L   K RP 
Sbjct: 210 SFTDTDALPILHHARGLLREGKILA-----VKGLGGFLFACDATNETAVAELRRRKHRP- 263

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL---STANLK 113
             P    V DI   +    +        +     P+ ++   L T  +  +         
Sbjct: 264 HKPFALMVRDIDAARALCGITTEDEAALRHLR-RPVVILPRRLDTNQVPGIGLSVAPGNN 322

Query: 114 TACFRVPCGFTKKLIETYGHP--------LAIPSANRSGQISITNVKHILSSSICKEIPL 165
           T    +P      L+     P        L + S N S +  + +    L          
Sbjct: 323 TLGIMLPYTPLHYLL-FSDSPQKDSAFSALVMTSGNISEEPIVISNIDALLQLDGVADWF 381

Query: 166 IIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
           ++        ++ ++V     ++  + R  G   + L
Sbjct: 382 LLHNREIATRVDDSVVRTFEGRERVLRRSRGFTPQAL 418


>gi|196232005|ref|ZP_03130861.1| hypothetical protein CfE428DRAFT_4027 [Chthoniobacter flavus
           Ellin428]
 gi|196224127|gb|EDY18641.1| hypothetical protein CfE428DRAFT_4027 [Chthoniobacter flavus
           Ellin428]
          Length = 35

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 286 MKIADDSGASSIAFSSIPNHGLGIAINNRLERAAA 320
           M+  D++G   I    +P HGLGIAI +RL +A+A
Sbjct: 1   MRRLDEAGLDMILAEEVPEHGLGIAIMDRLRKASA 35


>gi|253687192|ref|YP_003016382.1| hypothetical protein PC1_0792 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753770|gb|ACT11846.1| conserved hypothetical protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 259

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 18/171 (10%)

Query: 15  ACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           A + +   G  I  PT+  Y +     +   + R ++ K+R    P +     ++ +K  
Sbjct: 16  AVQVMSRGGGIIVSPTKVGYIIMAS--DKVGLERKFDAKQRNRNKPGVVLCGSLAQLKAL 73

Query: 74  ASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV----P 120
           A ++P    L +  W     L  +L                 L   + KT+CF +    P
Sbjct: 74  AQLNPEIERLYQRHWDADVLLGCILPWRDEALAQIPKDGSKALMMDDRKTSCFVIKFGKP 133

Query: 121 CGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
               T+ L E YG      SAN SG+ +   VK  +   I     LII+  
Sbjct: 134 SEILTQALWEGYGKLTFASSANPSGKGNRGEVKG-IGERISAFADLIIEAD 183


>gi|124514745|gb|EAY56257.1| putative translation factor (SUA5) [Leptospirillum rubarum]
          Length = 173

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 4/115 (3%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVLDLLSTTDI 104
           RRL+ IK R    P++     +S+V + A +   S     +  WP   TLVL        
Sbjct: 54  RRLFSIKARSPGKPILYLAGSLSVVARFARLPDTSRCRRHVSRWPNFRTLVLPARP--LA 111

Query: 105 HPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSS 158
             L  A+     FR+P   F +  ++  G PL+  S N SG   + +   IL + 
Sbjct: 112 VQLGMAHNGGVAFRIPEDRFLRLFLKFLGTPLSGTSLNLSGNPPLRSPDAILRAF 166


>gi|292489722|ref|YP_003532612.1| hypothetical protein EAMY_3259 [Erwinia amylovora CFBP1430]
 gi|292898070|ref|YP_003537439.1| hypothetical protein EAM_0344 [Erwinia amylovora ATCC 49946]
 gi|291197918|emb|CBJ45019.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291555159|emb|CBA23347.1| hypothetical protein EAMY_3259 [Erwinia amylovora CFBP1430]
 gi|312173901|emb|CBX82155.1| hypothetical protein EAIL5_3335 [Erwinia amylovora ATCC BAA-2158]
          Length = 259

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 14  KACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A E L   G  I  PT+  Y +     +   + R ++ K+R    P +     +  +K+
Sbjct: 15  EAVEILSANGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72

Query: 73  HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRVP--- 120
            A ++P    L +  W     L  +L                 L     +T+CF +    
Sbjct: 73  LAQLNPEIEALYQQHWDKDVLLGCILPWKEEAVARIPDDGSKELMMDRRQTSCFVIKFGL 132

Query: 121 --CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 K+L E +G      SAN SG+ +   V+  +   I +   LII
Sbjct: 133 PGENLAKELWENHGKFSFASSANPSGKGNRGLVEG-IGDRIEQHADLII 180


>gi|254430228|ref|ZP_05043931.1| (NiFe) hydrogenase maturation protein HypF [Cyanobium sp. PCC 7001]
 gi|197624681|gb|EDY37240.1| (NiFe) hydrogenase maturation protein HypF [Cyanobium sp. PCC 7001]
          Length = 837

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 23/220 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A + L AG  +A+      G+       ++    A++RL   K RPA  P    V
Sbjct: 209 DPIAAAADLLRAGGILALQ-----GVGGFQLLVEATRQEAVQRLRRRKSRPA-KPFALLV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDI---------HPLSTANLKTA 115
           +D + ++    +    + L +   P    ++L                            
Sbjct: 263 ADPAWLEPQVRIGEAEIRLLRS--PAAPIVLLRRRHDPQALQGPAAMVVAEAVAPGSPAL 320

Query: 116 CFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI 174
              +P     + L+   G PL   S N SG+    +               ++       
Sbjct: 321 GVMLPASPLHRLLVAAVGRPLVATSGNPSGEPLCIDPLEARQRLAGIADAFLLHNRPIAR 380

Query: 175 GLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
            L+ ++V +   + V + R  G     L   +    ++  
Sbjct: 381 PLDDSLVQLIDGRPVLLRRARGHAPAALDLPLPPPADHAA 420


>gi|38637761|ref|NP_942735.1| HypF2 [Ralstonia eutropha H16]
 gi|124053466|sp|O07451|HYPF2_RALEH RecName: Full=Carbamoyltransferase hypF2; AltName: Full=Carbamoyl
           phosphate-converting enzyme hypF2; AltName:
           Full=[NiFe]-hydrogenase maturation factor hypF2;
           Short=Hydrogenase maturation protein hypF2
 gi|32527099|gb|AAP85849.1| HypF2 [Ralstonia eutropha H16]
          Length = 807

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 27/171 (15%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           M + D + + +    L  G  +AI      GL       D+ N  A+ RL   K+R    
Sbjct: 207 MPVEDVDPIAETVARLQRGEIVAIK-----GLGGFHLACDAHNADAVARLRSRKQR-EEK 260

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P    V++++   +   +      L       P+ L+                L      
Sbjct: 261 PFAVMVANLATAAQWGDIGSGEAALLTAS-ERPIVLLRKRSGVDGRFAGVAPGLVWLGVM 319

Query: 119 VPCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHI 154
           +P    + L+  E  G P             L + SAN  G+  +T     
Sbjct: 320 LPYTPLQYLLFHEAAGRPEGLGWLAQPQSLVLVMTSANPGGEPLVTGNDEA 370


>gi|153003391|ref|YP_001377716.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026964|gb|ABS24732.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter sp.
           Fw109-5]
          Length = 781

 Score = 62.0 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 12/142 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+ +  A+  L   K+R    PL   V D+   ++ A +      L       P+ L
Sbjct: 238 LACDATSSAAVATLRARKRR-EEKPLAVMVRDLDEARRLAEIGEAEAALLASV-ERPIVL 295

Query: 95  VLDLLSTT--------DIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQ 145
                            + P    +       +P       L+     PL + S N S +
Sbjct: 296 CRRRPEARFDGLTVSGSLAPEVAPDSPLVGLLLPYAPLHHLLLGAAARPLVMTSGNLSEE 355

Query: 146 ISITNVKHILSSSICKEIPLII 167
                    L   +     L +
Sbjct: 356 PIAFEDDEALR-RLGGIADLFL 376


>gi|213648111|ref|ZP_03378164.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 800

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|220927915|ref|YP_002504824.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           cellulolyticum H10]
 gi|219998243|gb|ACL74844.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           cellulolyticum H10]
          Length = 790

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 17/160 (10%)

Query: 16  CEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + +  G  +A     V     Y LA D  N  A+ RL   K R    P      D+   
Sbjct: 210 ADLVKKGNIVA-----VKGIGGYHLACDGLNKKAVDRLRTRKHRD-DKPFAVMAKDLRTA 263

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-E 129
           +K+  ++ +  ++       P+ ++L+      +        +     +P      L+ E
Sbjct: 264 EKYCKINYVEKNILTSTA-SPI-VLLEKKDGVILPESLAHLNRYLGVMLPYTPVHHLLFE 321

Query: 130 TYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             G P  L + S N S +      +  +   +       +
Sbjct: 322 EKGFPELLVMTSGNLSNEPIFYKDEEAV-EGLQGIADAYL 360


>gi|168820472|ref|ZP_02832472.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205342891|gb|EDZ29655.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320087245|emb|CBY97010.1| Carbamoyltransferase hypF Carbamoyl phosphate-converting enzyme
           hypF; [NiFe]-hydrogenase maturation factor hypF;
           Hydrogenase maturation protein hypF [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 746

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNANAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|56414794|ref|YP_151869.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363722|ref|YP_002143359.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129051|gb|AAV78557.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095199|emb|CAR60750.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 746

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALDY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|312601592|gb|ADQ90847.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168]
          Length = 272

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 33/169 (19%)

Query: 29  TETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--LSL 81
           T+TV G+A      D      +  ++ IKKR     ++  V+++  +K     +      
Sbjct: 129 TDTVPGIASFYKNCD------LDAIFVIKKRDFSKKIVTLVANLEQIKPLIKQENYKKLK 182

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            + K  WPG  TL+++  S                FR+P       +     P  + SAN
Sbjct: 183 KITKKIWPGATTLIIENQS----------------FRIPNQVKLLKLLKKNGPAFVTSAN 226

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            S +  +  V          +I  I + G    G  S + ++  +K +R
Sbjct: 227 ISNEKPLDLVSA--KRKFW-QITKIFNFGPG-TGKVSRVFDLDNKKWIR 271


>gi|90578214|ref|ZP_01234025.1| hydrogenase maturation protein HypF [Vibrio angustum S14]
 gi|90441300|gb|EAS66480.1| hydrogenase maturation protein HypF [Vibrio angustum S14]
          Length = 796

 Score = 61.6 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 26/182 (14%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
            T   A+ +  + +  G  +A     V G+       D+ N  A+  L ++K R    PL
Sbjct: 213 ATKQTAIEQLAQKIKDGEIVA-----VKGIGGFHLACDATNAQAVASLRKLKYR-QSKPL 266

Query: 61  ICHVSDISMVKKHAS-VDPLSLHLAKLFWP-----GPLTLVLDLLSTTD--IHPLSTANL 112
               +   + ++     D     LA    P       L +V + ++ T   +      N+
Sbjct: 267 AIMAASDDIAQQFVEGCDAEWKALAAQARPIVLMNKRLDIVAEEVTRTGGVLAENVAPNV 326

Query: 113 KTACFRVPCGFTKKLIE------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI 166
                 +P      L+            L + SAN SG    T +  + +     +I  I
Sbjct: 327 PYLGIMLPYTPLHYLLFDELKAIGATSTLVMTSANLSGMPIATELAQVCT-QFSGKISGI 385

Query: 167 ID 168
           +D
Sbjct: 386 LD 387


>gi|317049966|ref|YP_004117614.1| hypothetical protein Pat9b_3768 [Pantoea sp. At-9b]
 gi|316951583|gb|ADU71058.1| conserved hypothetical protein [Pantoea sp. At-9b]
          Length = 259

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 14  KACEFL-DAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71
           +A E L   G  I  PT+  Y +     +  A + R +E K R    P +     +  ++
Sbjct: 15  EAIEILAKEGGMIVSPTKVGYII---MTSDKAGLERKFEAKNRNRNKPGVVLCGSLEQLR 71

Query: 72  KHASVDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACFRV--- 119
             A ++P    L +  W   + L  +L                 L     +T+CF +   
Sbjct: 72  SLAQLNPEIDELYQRHWDQDILLGCILPWREDALARIPADGSKELMMDGRQTSCFVIKFG 131

Query: 120 -PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            P     K + E +G      SAN SGQ +   V+  +   I     LII
Sbjct: 132 KPGEILAKELWEKHGKFSFASSANPSGQGNRGLVEG-IGERIESRADLII 180


>gi|168262046|ref|ZP_02684019.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464034|ref|ZP_02697951.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195633530|gb|EDX51944.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|205349051|gb|EDZ35682.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGRPPAITNEQALDD 340


>gi|322614339|gb|EFY11270.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621596|gb|EFY18449.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624457|gb|EFY21290.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628788|gb|EFY25571.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633485|gb|EFY30227.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635939|gb|EFY32647.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639647|gb|EFY36332.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646830|gb|EFY43333.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650598|gb|EFY47003.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654790|gb|EFY51109.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659010|gb|EFY55263.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664423|gb|EFY60617.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668328|gb|EFY64485.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673692|gb|EFY69793.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677753|gb|EFY73816.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681417|gb|EFY77449.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322683819|gb|EFY79829.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323193792|gb|EFZ78995.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200262|gb|EFZ85344.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203235|gb|EFZ88264.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205518|gb|EFZ90483.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212806|gb|EFZ97617.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216332|gb|EGA01059.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221080|gb|EGA05511.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226901|gb|EGA11083.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230815|gb|EGA14933.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234834|gb|EGA18920.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238873|gb|EGA22923.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241573|gb|EGA25604.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248280|gb|EGA32216.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251136|gb|EGA35009.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256019|gb|EGA39757.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263154|gb|EGA46692.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264341|gb|EGA47847.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271168|gb|EGA54596.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGRPPAITNEQALDD 340


>gi|226939770|ref|YP_002794843.1| HypF [Laribacter hongkongensis HLHK9]
 gi|226714696|gb|ACO73834.1| HypF [Laribacter hongkongensis HLHK9]
          Length = 794

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 29/159 (18%)

Query: 17  EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +FL  G  +AI      GL       ++R+  A+ RL  +K RP+  PL     +++ V+
Sbjct: 226 QFLRMGRCVAIK-----GLGGFHLACNARSAEAVARLRMLKHRPS-RPLAVMALNLASVE 279

Query: 72  KHASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128
               V P    L +   P  P+ L+          P     + T    +P      L+  
Sbjct: 280 TFCHVSPEEAALLQS--PKRPIVLLQKRAEADQYLPGIAPGMNTVGVMLPYTPIHWLMFH 337

Query: 129 ETYGHPLAI-------------PSANRSGQISITNVKHI 154
           E+   P  +              SAN SG+  +T+    
Sbjct: 338 ESLRRPAGLDWMEAPCADVWVMTSANLSGEPIVTDNDDA 376


>gi|111021595|ref|YP_704567.1| hydrogenase maturation protein [Rhodococcus jostii RHA1]
 gi|110821125|gb|ABG96409.1| hydrogenase maturation protein [Rhodococcus jostii RHA1]
          Length = 768

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 54/165 (32%), Gaps = 24/165 (14%)

Query: 5   SITDSNALRKACE-FLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
            I   +A+  A +  L  G  +A     V GL       D+ NP A+  L   K RP   
Sbjct: 196 RIDGDDAVLTAVQGALRDGRIVA-----VKGLGGFHLVCDAANPVAVETLRARKHRP-DK 249

Query: 59  PLICHVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
           P     +D S   +   +  P S  L     P    L+L   +T  +       +     
Sbjct: 250 PFAVMTADPSAAAELCEISEPESALLRHAARP---ILLLRKKNTASVADGIAPGIDDLGV 306

Query: 118 RVPCGFTKKLI--ETYGHPL------AIPSANRSGQISITNVKHI 154
            +P      L+   T G  +       + S N SG+    +    
Sbjct: 307 MLPYTPLHHLLFTRTPGAGVDPPRVLVMTSGNLSGEPLCFDNDDA 351


>gi|71893997|ref|YP_279443.1| hypothetical protein MHJ_0649 [Mycoplasma hyopneumoniae J]
 gi|71852124|gb|AAZ44732.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 287

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 33/169 (19%)

Query: 29  TETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDP--LSL 81
           T+TV G+A      D      +  ++ IKKR     ++  V+++  +K     +      
Sbjct: 144 TDTVPGIASFYKNCD------LDAIFVIKKRDFSKKIVTLVANLEQIKPLIKQENYKKLK 197

Query: 82  HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSAN 141
            + K  WPG  TL+++  S                FR+P       +     P  + SAN
Sbjct: 198 KITKKIWPGATTLIIENQS----------------FRIPNQVKLLKLLKKNGPAFVTSAN 241

Query: 142 RSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
            S +  +  V          +I  I + G    G  S + ++  +K +R
Sbjct: 242 ISNEKPLDLVSA--KRKFW-QITKIFNFGPG-TGKVSRVFDLDNKKWIR 286


>gi|304315653|ref|YP_003850798.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777155|gb|ADL67714.1| (NiFe) hydrogenase maturation protein HypF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 748

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 17/155 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62
           + + ++   E L  G  +AI      G+       ++ +  A+ RL E K R    PL  
Sbjct: 201 NDDPIKAVAEDLRDGKIVAIK-----GIGGYHLAVNALSRDAVFRLRERKNR-YGKPLAL 254

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + DI  VKK   +    + L       P+ L+        I       L +    +P  
Sbjct: 255 MMKDIDCVKKFCYLSDDEMELLNSQR-RPIVLLKKKHKFEGISD----GLDSVGVMLPYT 309

Query: 123 FTKKLIETY-GHPLAIPSANRSGQISITNVKHILS 156
               L+  +   P+ + S N S +    + +  L 
Sbjct: 310 PIHYLLFEFIDFPIVMTSGNISEEPLCKDNEEALK 344


>gi|62181345|ref|YP_217762.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128978|gb|AAX66681.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715828|gb|EFZ07399.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|194444479|ref|YP_002042083.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194403142|gb|ACF63364.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|224584619|ref|YP_002638417.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469146|gb|ACN46976.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|197261857|ref|ZP_03161931.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197240112|gb|EDY22732.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|207858106|ref|YP_002244757.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206709909|emb|CAR34262.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|16761619|ref|NP_457236.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143103|ref|NP_806445.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213852357|ref|ZP_03381889.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25324739|pir||AF0845 hydrogenase maturation protein [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503920|emb|CAD05949.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138736|gb|AAO70305.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|197249232|ref|YP_002147739.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197212935|gb|ACH50332.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|238909609|ref|ZP_04653446.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|260576157|ref|ZP_05844150.1| (NiFe) hydrogenase maturation protein HypF [Rhodobacter sp. SW2]
 gi|259021637|gb|EEW24940.1| (NiFe) hydrogenase maturation protein HypF [Rhodobacter sp. SW2]
          Length = 748

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+  A   L AG  +AI      GL       D+RN  A+  L + K+RPA  P    +
Sbjct: 199 DAVALAVARLKAGQVLAIK-----GLGGFHLACDARNAAAVELLRQRKRRPA-KPFAVMM 252

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            +   +     V    L L +    G    V  + S   +       + T    +P    
Sbjct: 253 GE-GDLGGFCEVSDDILGLLR----GAAAPVAVVRSLGKLPEAVAPGMATLGVMLPYTPL 307

Query: 124 TKKLIETYGHPLAIPSANRSGQIS 147
              LI+ +G  L + S N SG+  
Sbjct: 308 HHLLIDGFGGTLVMTSGNLSGEPQ 331


>gi|205353786|ref|YP_002227587.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205273567|emb|CAR38554.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628894|gb|EGE35237.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGVHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|200387000|ref|ZP_03213612.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199604098|gb|EDZ02643.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 746

 Score = 61.6 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|213426135|ref|ZP_03358885.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 746

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|116619099|ref|YP_819470.1| putative translation factor (SUA5) [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116097946|gb|ABJ63097.1| Putative translation factor (SUA5) [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 262

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 25/206 (12%)

Query: 14  KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A + L   G  I  PT+  Y +     +   + R +  K R    P +     +  VK+
Sbjct: 18  EAIDILKEDGGMIVSPTKVGYIIMTS--DDQGLERKFAAKNRKRNKPGVVLCGSVEQVKE 75

Query: 73  HASVDPLSLHLAKLFWPGPLTL--VLDLL--STTDIHPLSTANL-----KTACFRV---- 119
            A + P    + +  W   + L  +L     + + I    T NL     +T+CF +    
Sbjct: 76  LAQMTPEIEQMYQQHWDEDILLGCILPWKEEAKSKIPNDGTKNLMMDKRETSCFVIKFGT 135

Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 K++ E YG      SAN SG+ +   V   +   I     LII+       + S
Sbjct: 136 PSENIAKEMWEKYGKFSFASSANPSGKGNRGLVAG-IGDQIENAADLIIEADDY---VAS 191

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKR 204
               +Q +K +      G+ +  +  
Sbjct: 192 ----IQPDKTLDTRYEQGVMVSMVDE 213


>gi|316931895|ref|YP_004106877.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris DX-1]
 gi|315599609|gb|ADU42144.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris DX-1]
          Length = 750

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 55/172 (31%), Gaps = 23/172 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
           ++      L AG  +A+ +   Y L  D+ N TA+  L   K R A  P    V+  + +
Sbjct: 196 SIAGIVACLRAGGIVALKSLGGYHLLCDATNETAVAELRRRKGRDA-KPFAVMVASEASL 254

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-- 128
            + A        L       P+ L   + S   + P     L      +P      LI  
Sbjct: 255 DRLAEASAAERALLSSV-ERPVVL---MKSRGVLAPSVAPGLGALGVMLPYTPLHHLIFH 310

Query: 129 ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              G P             L   SAN  G   +T+        +     LI+
Sbjct: 311 AAAGSPAGRDWQRAPVDLVLVATSANGGGDPIVTDDA---GRKLAGVADLIV 359


>gi|16766148|ref|NP_461763.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167994144|ref|ZP_02575236.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16421387|gb|AAL21722.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205327915|gb|EDZ14679.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261247978|emb|CBG25811.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994963|gb|ACY89848.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159402|emb|CBW18920.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913860|dbj|BAJ37834.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223394|gb|EFX48460.1| NiFe hydrogenase metallocenter assembly protein HypF [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131193|gb|ADX18623.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332989714|gb|AEF08697.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 746

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNANAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQELNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|213052204|ref|ZP_03345082.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213581557|ref|ZP_03363383.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 637

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|168242570|ref|ZP_02667502.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194451590|ref|YP_002046802.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194409894|gb|ACF70113.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205338018|gb|EDZ24782.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 746

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|168235872|ref|ZP_02660930.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735422|ref|YP_002115794.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194710924|gb|ACF90145.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290813|gb|EDY30167.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 746

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|315124141|ref|YP_004066145.1| NiFe [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315017863|gb|ADT65956.1| NiFe [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 728

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|284925883|gb|ADC28235.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 729

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|198244103|ref|YP_002216813.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197938619|gb|ACH75952.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326624572|gb|EGE30917.1| NiFe hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 746

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYIPSLSEGIAPGLTEVGVMLPANPLQHLLLQELNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGRPPAITNEQALDD 340


>gi|86153323|ref|ZP_01071527.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843049|gb|EAQ60260.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 729

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|291288874|ref|YP_003505690.1| (NiFe) hydrogenase maturation protein HypF [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290886034|gb|ADD69734.1| (NiFe) hydrogenase maturation protein HypF [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 745

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+  A E +D+G  IA     V GL       D+     ++ L  +KKRP   PL   
Sbjct: 193 QDAIDHAAEIIDSGGIIA-----VKGLGGYHLICDATQDIPVKTLRNLKKRP-DKPLAVM 246

Query: 64  VSDISMVKKHASVDPLSLHLAKLF-WPGPLTLVL--DLLSTTDIHPLSTANLKTACFRVP 120
                 ++K+    P      KLF  P    +++    L  +      + N+       P
Sbjct: 247 C-SYETIQKYCDDAPS----LKLFCSPQAPIVIMKVPDLPVSAFANPMSPNVGCIAPYTP 301

Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHI 154
               + L++T     L   S NR  +    + +  
Sbjct: 302 LH--RVLMKTCKSDFLIATSGNRKDEPIAKDEREA 334


>gi|213855332|ref|ZP_03383572.1| hypothetical protein SentesT_15207 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 73

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQ 184
           + L+E  G P+   S    G     +    +   + K++ LII GG       +T++++ 
Sbjct: 1   QALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQ-KPTTVIDLT 59

Query: 185 CEKKVRILRPGG 196
            +  V +    G
Sbjct: 60  DDTPVVVREGVG 71


>gi|14590753|ref|NP_142823.1| transcriptional regulatory protein hypF [Pyrococcus horikoshii OT3]
 gi|3257308|dbj|BAA29991.1| 773aa long hypothetical transcriptional regulatory protein hypF
           [Pyrococcus horikoshii OT3]
          Length = 773

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 23/158 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAI----RRLYEIKKRPAMNPL 60
           + LRKA + +D G  +AI      G+       D+     +    +R++    RP   P 
Sbjct: 202 DPLRKAAKLIDKGYIVAIK-----GIGGIHLACDATREDVVVELRKRIF----RPQ-KPF 251

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                D+  ++  A V P        +   P+ + L       +       L T    +P
Sbjct: 252 AIMAKDLETIRTFAYVSPEEEEELTSYR-RPI-VALKKKEPFPLPENLAPGLHTIGVMLP 309

Query: 121 CGFTKKLIETYG-HPL-AIPSANRSGQISITNVKHILS 156
              T  ++  +   P+  + SAN  G   I + +    
Sbjct: 310 YAGTHYILFHWSETPVYVMTSANFPGMPMIKDNEEAFE 347


>gi|259909880|ref|YP_002650236.1| putative translation factor [Erwinia pyrifoliae Ep1/96]
 gi|224965502|emb|CAX57034.1| putative translation factor [Erwinia pyrifoliae Ep1/96]
 gi|283479964|emb|CAY75880.1| hypothetical protein EPYR_03500 [Erwinia pyrifoliae DSM 12163]
          Length = 259

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 14  KACEFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A + L   G  I  PT+  Y +     +   + R ++ K+R    P +     +  +K+
Sbjct: 15  EAVKILSANGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72

Query: 73  HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFR----V 119
            A ++P    L +  W     L  +L                 L     +T+CF     V
Sbjct: 73  LAQLNPEIEALYQQHWDKDVLLGCILPWKEEAVARIPDDGSKELMMDRRQTSCFVIKFGV 132

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           P     K L E +G      SAN SG+ +   V+  +   I +   LII
Sbjct: 133 PGENLAKALWENHGKFSFASSANPSGKGNRGLVEG-IGERIEQHADLII 180


>gi|167550320|ref|ZP_02344077.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205324892|gb|EDZ12731.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 746

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQELNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|57641932|ref|YP_184410.1| hydrogenase maturation protein HypF [Thermococcus kodakarensis
           KOD1]
 gi|57160256|dbj|BAD86186.1| hydrogenase maturation protein HypF [Thermococcus kodakarensis
           KOD1]
          Length = 772

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 15/201 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + LRKA E +D G  +AI      G+       D+ N   +  L     RP   P     
Sbjct: 201 DPLRKAAELIDKGYIVAIK-----GIGGIHLACDAANEEVVAELRRRTFRPQ-KPFAIMA 254

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            DI  VK  A V P        +   P+ + L       +       L T    +P   T
Sbjct: 255 KDIETVKSFAYVSPEEEEELTSYR-RPI-ITLRKKEPFPLPENLAPGLHTIGVMLPYAGT 312

Query: 125 KKLIETYGH-PL-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
             ++  +   P+  + SAN  G   + + +             ++         + +++ 
Sbjct: 313 HYILFHWSKTPVYVMTSANYPGMPMVKDNERAFEELKDVADYFLLHNRKILNRADDSVIR 372

Query: 183 VQCEKKVRILRPGGLEIETLK 203
               K+  I R  G     ++
Sbjct: 373 FVDGKRAVIRRSRGFVPLPIE 393


>gi|323477028|gb|ADX82266.1| (NiFe) hydrogenase maturation protein HypF [Sulfolobus islandicus
           HVE10/4]
          Length = 741

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 69/189 (36%), Gaps = 17/189 (8%)

Query: 16  CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + ++ G  IAI      G+       D  N   + +L E K RP   P      D+  V
Sbjct: 209 VKLIEEGYIIAIK-----GIGGFHIAADPFNDDVVLKLRERKNRPQ-KPFAVMALDLPTV 262

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           +K+A V  L   L K   P    ++L      ++    + +L    F +       L+  
Sbjct: 263 EKYAYVSNLERELLKS--PQKPIVLLKKKEPYELSKYLSPDLDREGFFLFYTAVHYLLLD 320

Query: 131 Y--GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEK 187
           Y   H L + S N+ G       +      +   I  I+    + +  ++ +++ V   +
Sbjct: 321 YMKNHVLIMTSGNKHGYPMCI-DEKCAREKLKGVIDYILYHNRNIVNRVDDSVIRVSANR 379

Query: 188 KVRILRPGG 196
            + I R  G
Sbjct: 380 VMFIRRSRG 388


>gi|303229635|ref|ZP_07316423.1| carbamoyltransferase HypF [Veillonella atypica ACS-134-V-Col7a]
 gi|302515760|gb|EFL57714.1| carbamoyltransferase HypF [Veillonella atypica ACS-134-V-Col7a]
          Length = 765

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 15/201 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +    A E +  G  IA+      G+       D+ N  A++ L E K R    P    
Sbjct: 211 DDCFETAREMISNGAIIALK-----GIGGYHLVCDATNDKAVQTLRERKHR-KDKPFAIM 264

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCG 122
              I +V+  A V    L         P+ L+    +    I  L   N       +P  
Sbjct: 265 AGSIDIVEDFAVVSDGDLDALSA-MARPIVLLEKNDNFHASISELVAPNNHLIGVMLPYA 323

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181
               ++  +     + S N  G   I + +   S  +       +         ++ +IV
Sbjct: 324 PIHHVLVPHDAKWVMTSGNARGDSVIYDDEKAFSE-LQTIADYFLTHNRQIYAPVDDSIV 382

Query: 182 NVQCEKKVRILRPGGLEIETL 202
           +V  +  + I R  G   E +
Sbjct: 383 SVVEDTPILIRRSRGYIPEPI 403


>gi|213029430|ref|ZP_03343877.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 550

 Score = 61.2 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|294676323|ref|YP_003576938.1| hydrogenase maturation protein HypF [Rhodobacter capsulatus SB
           1003]
 gi|729796|sp|Q02987|HYPF_RHOCA RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl
           phosphate-converting enzyme hypF; AltName:
           Full=[NiFe]-hydrogenase maturation factor hypF;
           Short=Hydrogenase maturation protein hypF
 gi|46050|emb|CAA78795.1| hypF [Rhodobacter capsulatus]
 gi|294475143|gb|ADE84531.1| hydrogenase maturation protein HypF [Rhodobacter capsulatus SB
           1003]
          Length = 739

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 17/144 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+  A   L AG  +A     V GL       D+ N  A+  L   K+RPA  P     
Sbjct: 194 DAIGLAAARLKAGEILA-----VKGLGGFHLACDATNADAVDLLRARKRRPA-KPFALMA 247

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            +   + +  +V P +L   +     P   ++ + +   +       +      +P    
Sbjct: 248 RE-EDLARIVAVSPAALAALRD----PAAPIVLMPARGSLPETLAPGMAELGVMLPYTPL 302

Query: 124 TKKLIETYGHPLAIPSANRSGQIS 147
              L++ +G  L + S N SG   
Sbjct: 303 HHLLLDAFGGVLVMTSGNLSGAPQ 326


>gi|289803763|ref|ZP_06534392.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 463

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|161615743|ref|YP_001589708.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365107|gb|ABX68875.1| hypothetical protein SPAB_03534 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 746

 Score = 60.8 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL         +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMFPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|167814479|ref|ZP_02446159.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 91]
          Length = 72

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
                +A     ++        A  L+  ++  D +  + I    +P+     A+N+RL 
Sbjct: 3   AGAWAHAAGVHFVAAPEDPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLG 62

Query: 317 R 317
           R
Sbjct: 63  R 63


>gi|78188511|ref|YP_378849.1| hydrogenase maturation protein HypF [Chlorobium chlorochromatii
           CaD3]
 gi|78170710|gb|ABB27806.1| Hydrogenase maturation protein HypF [Chlorobium chlorochromatii
           CaD3]
          Length = 749

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            + L +    L  G  +AI      G+       D+ N  A+ RL + K R A  P    
Sbjct: 199 DDPLEETASLLHHGAIVAIK-----GIGGFHVAVDALNDDAVLRLRKSKGREA-KPFAVM 252

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           + D+++V+++  V+      L     P    ++L  L+ T +      +       +P  
Sbjct: 253 MRDVAVVERYCMVNDDERQALLSAEAP---IVLLKKLANTQLAASVAPDNDRLGVMLPYT 309

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
                L +     L + SAN S +  +      L 
Sbjct: 310 PLHLLLFDRVPEVLVMTSANMSEEPMVHENSEALQ 344


>gi|297616579|ref|YP_003701738.1| (NiFe) hydrogenase maturation protein HypF [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144416|gb|ADI01173.1| (NiFe) hydrogenase maturation protein HypF [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 776

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 19/150 (12%)

Query: 16  CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            E L  G  +A     V GL       D++N  A+R L   KKR A  P      DI   
Sbjct: 225 IELLKRGYIVA-----VKGLGGFHLAADAKNRDAVRSLRHRKKREA-KPFAVMARDIEAA 278

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP-LSTANLKTACFRVPCGFTKKLIE 129
           +++  ++P+         P    ++L+      +   L    + T    +P      L+ 
Sbjct: 279 RRYCHINPVEEQWLTS--PAAPIVILERNWDGLLPDELIHPGIDTIGVMLPYTPLHYLL- 335

Query: 130 TYGHP---LAIPSANRSGQISITNVKHILS 156
            +      L + SAN + +  I +    L 
Sbjct: 336 -FDGELDLLIMTSANITDEPLIIDNSEALF 364


>gi|289823883|ref|ZP_06543489.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 355

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PTAAR-SLLTTPAAPIVLVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|94987149|ref|YP_595082.1| hydrogenase maturation factor [Lawsonia intracellularis PHE/MN1-00]
 gi|94731398|emb|CAJ54761.1| Hydrogenase maturation factor [Lawsonia intracellularis PHE/MN1-00]
          Length = 796

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 24/163 (14%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +S A+  A E++  G  IA+      G+       D+ N   +  L   K RP   PL  
Sbjct: 211 NSEAILLAIEYIYKGKIIAMK-----GIGGFHLICDATNADVVNTLRYRKNRP-DKPLAV 264

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120
            V +I++ ++ A +  + +   +   P    ++L  +  + +      ++ T    +P  
Sbjct: 265 MVPNINIARQIAYISEVEIQKMQS--PECPIVILKAIPHS-LPKNIAPDVSTIGLMLPYT 321

Query: 121 --CGFTK------KLIETYGHPLAIPSANRSGQISITNVKHIL 155
                          +E     L + SAN SG   I N    L
Sbjct: 322 PLHHILCNTLTKVAELERIIPALVMTSANVSGGTIIYNNDDAL 364


>gi|325568779|ref|ZP_08145072.1| putative translation factor (SUA5) [Enterococcus casseliflavus ATCC
           12755]
 gi|325157817|gb|EGC69973.1| putative translation factor (SUA5) [Enterococcus casseliflavus ATCC
           12755]
          Length = 263

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 18/172 (10%)

Query: 13  RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++A  +L+  G  I  PT+  Y +AV   +   + R +  K R    P +   S +  + 
Sbjct: 18  QRAINYLNEEGKVIVCPTKVGYIIAVS--DKKGLERKFSAKNRKRNKPGVVLCSSLEQLH 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACFR---- 118
           + A ++  +  + +  W   +    +L                 L T    T+CF     
Sbjct: 76  ELAELNAETAAVYETCWNNDVLFGAILPWKESGKAYIPKDGSEELMTDVRGTSCFVIKFG 135

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           VP    +K+L +     L   SAN SG+ +   V+  +   I +E  LII+G
Sbjct: 136 VPGEQISKELWDQKKKLLFASSANPSGKGNRGLVEG-IGEQIAQEADLIIEG 186


>gi|229490816|ref|ZP_04384651.1| [NiFe] hydrogenase maturation protein HypF [Rhodococcus
           erythropolis SK121]
 gi|229322206|gb|EEN87992.1| [NiFe] hydrogenase maturation protein HypF [Rhodococcus
           erythropolis SK121]
          Length = 762

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 21/174 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           ++T   AL +A   L  G  +A     V G+       D+R+  A+  L E K R A  P
Sbjct: 196 AVTGEGALLRARSLLRDGKILA-----VKGIGGFHLACDARDDRAVHELRERKHR-ASKP 249

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   V D+   ++   V              P+ LV    S   + PL    +      +
Sbjct: 250 LAVMVRDVPEARELGVVGDAEADAMYS-RERPIVLVAK-ASGYALSPLIAPGIPDIGIML 307

Query: 120 PCGFTKKLIE----TYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                + L+         P  L + SAN  G+  + +   +    +      ++
Sbjct: 308 AYNPIQHLLLGLAGEAAGPAVLVMTSANIGGEPILYSDNDL--ERLGDLADGVL 359


>gi|54295309|ref|YP_127724.1| hydrogenase maturation protein HypF [Legionella pneumophila str.
           Lens]
 gi|53755141|emb|CAH16634.1| Hydrogenase maturation protein HypF [Legionella pneumophila str.
           Lens]
          Length = 741

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ K  + +  G  IA+      GL       D+RN   I +L   K R A  P    V+
Sbjct: 189 SVDKVAQRIQEGEIIALK-----GLGGYQLICDARNEETISKLRLRKNREA-KPFALMVA 242

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           ++   ++ A V   +  L       P  +VL       +       L      +P     
Sbjct: 243 NVKSAEEIAEVSCQA-RLVLESRERP--IVLLRKKKAPLPDGIAPGLNHFGIMLPSTPLH 299

Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            L+     G+P             L + SAN  G+  I + K      +      II   
Sbjct: 300 YLLFNSFLGNPDYCQWLDEYHFMVLVVTSANIGGEPLIIDDKKA-EQGLNSIADKIISHD 358

Query: 171 ISKIG-LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
              I   + ++V +  +  V I R  G     L+  +  E+   V
Sbjct: 359 REIITRTDDSVVRMINDTSVLIRRARGYVPAPLR--LPYEIPPTV 401


>gi|169831797|ref|YP_001717779.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638641|gb|ACA60147.1| (NiFe) hydrogenase maturation protein HypF [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 773

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           L  D++N  A+R L   K R A  P      D ++V+++  ++     L     P    +
Sbjct: 238 LVCDAQNRDALRELRRRKGRDA-KPFAVMARDPAVVERYCHLNDQERELLTS--PEAPIV 294

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI 137
           +L     TD+ P     LKT    +P      L+  +  P  +
Sbjct: 295 ILKRRPGTDLPPELAPGLKTLGVMLPYTPLHFLV--FTGPFDL 335


>gi|16331356|ref|NP_442084.1| HypF family transcriptional regulator [Synechocystis sp. PCC 6803]
 gi|3024006|sp|Q55638|HYPF_SYNY3 RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl
           phosphate-converting enzyme hypF; AltName:
           Full=[NiFe]-hydrogenase maturation factor hypF;
           Short=Hydrogenase maturation protein hypF
 gi|1001527|dbj|BAA10154.1| transcriptional regulatory protein; HypF [Synechocystis sp. PCC
           6803]
          Length = 767

 Score = 60.8 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 14/199 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            AL  A + L  G  IAI      GL       D+ +  A+ +L   K RP   PL    
Sbjct: 201 EALNFAVDNLKVGNIIAIK-----GLGGFHLCCDATDFEAVEKLRLRKHRP-DKPLAVMY 254

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            ++  + +H   + L + L +     P+ ++L+      +              +     
Sbjct: 255 GNLGQIVEHYQPNNLEVELLQSAA-API-VLLNKKKQLILVENIAPGNPRVGVMLAYTPL 312

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L++    P+   S N +G+    +    L+         ++        ++ ++V +
Sbjct: 313 HHLLLKKLKKPMVATSGNLAGEQICIDNIDALTRLQNIADGFLVHDRPIVCPVDDSVVQI 372

Query: 184 QCEKKVRILRPGGLEIETL 202
              K + + R  G   + +
Sbjct: 373 VAGKPLFLRRARGYAPQPI 391


>gi|303253086|ref|ZP_07339236.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307248363|ref|ZP_07530386.1| hypothetical protein appser2_13390 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648071|gb|EFL78277.1| hydrogenase maturation factor [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855101|gb|EFM87281.1| hypothetical protein appser2_13390 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 767

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A E L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILEAVEKLRQGCIVA-----VKGLGGFHLACDATQAKTIDLLRRRKTRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            +++ + +    + L L  +      P+ ++L       +H     +L      +P    
Sbjct: 263 PNLNWLTELTEEERLLLQSSAA----PI-VLLAKHKVRGVHEFVAPDLAEIGIMLPSNPL 317

Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+      PL + SAN+SG   + +     S 
Sbjct: 318 QHLLMHEVNMPLVMTSANQSGLPPVLDNDDAFSQ 351


>gi|18976931|ref|NP_578288.1| hydrogenase expression/formation regulatory protein [Pyrococcus
           furiosus DSM 3638]
 gi|18892549|gb|AAL80683.1| hydrogenase expression/formation regulatory protein [Pyrococcus
           furiosus DSM 3638]
          Length = 779

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 23/158 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIR----RLYEIKKRPAMNPL 60
           + LRKA + +D G  +AI      G+       D+     +     R++    RP   P 
Sbjct: 208 DPLRKAAKLIDKGYIVAIK-----GIGGIHLACDATREDVVAELRKRIF----RPQ-KPF 257

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                D+  V+  A + P        +   P+ + L       +       L T    +P
Sbjct: 258 AIMAKDLETVRTFAYISPEEEEELTSYR-RPI-VALKKKEPFPLPENLAPGLHTIGVMLP 315

Query: 121 CGFTKKLIETYGH-PL-AIPSANRSGQISITNVKHILS 156
              T  ++  +   P+  + SAN  G   I + +    
Sbjct: 316 YAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAFE 353


>gi|167909745|ref|ZP_02496836.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 112]
          Length = 62

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 274 KLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLER 317
                A  L+  ++  D +  + I    +P+     A+N+RL R
Sbjct: 10  DPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLGR 53


>gi|167893039|ref|ZP_02480441.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei 7894]
          Length = 70

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
                +A     ++        A  L+  ++  D +  + I    +P+     A+N+RL 
Sbjct: 1   AGAWAHAAGVHFVAAPEDPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLG 60

Query: 317 R 317
           R
Sbjct: 61  R 61


>gi|330007987|ref|ZP_08306131.1| carbamoyltransferase HypF [Klebsiella sp. MS 92-3]
 gi|328535261|gb|EGF61752.1| carbamoyltransferase HypF [Klebsiella sp. MS 92-3]
          Length = 744

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A   L AG  +AI      G+       D+ NP A+  L   K RPA  PL   
Sbjct: 195 EAALQAAIARLAAGKIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KPLAVM 248

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +   + +         +  L     P    +++     + +       L      +P   
Sbjct: 249 LPTATGL------PAAAAALMGS--PAAPIVLIAKAQVSSLCDEIAPGLAEVGVMLPSNP 300

Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157
            + L+      P+ + S N SG+    +    L+ 
Sbjct: 301 LQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNE 335


>gi|257867316|ref|ZP_05646969.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873649|ref|ZP_05653302.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257877394|ref|ZP_05657047.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257801372|gb|EEV30302.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807813|gb|EEV36635.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811560|gb|EEV40380.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 260

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 18/172 (10%)

Query: 13  RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++A  +L+  G  I  PT+  Y +AV   +   + R +  K R    P +   S +  + 
Sbjct: 15  QRAINYLNEEGKVIVCPTKVGYIIAVS--DKKGLERKFSAKNRKRNKPGVVLCSSLEQLH 72

Query: 72  KHASVDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACFR---- 118
           + A ++  +  + +  W   +    +L                 L T    T+CF     
Sbjct: 73  ELAELNAETAAVYETCWNNDVLFGAILPWKESGKAYIPNDGSEELMTDVRGTSCFVIKFG 132

Query: 119 VP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           VP    +K+L +     L   SAN SG+ +   V+  +   I +E  LII+G
Sbjct: 133 VPGEQISKELWDQKKKLLFASSANPSGKGNRGLVEG-IGEQIAQEADLIIEG 183


>gi|189426114|ref|YP_001953291.1| (NiFe) hydrogenase maturation protein HypF [Geobacter lovleyi SZ]
 gi|189422373|gb|ACD96771.1| (NiFe) hydrogenase maturation protein HypF [Geobacter lovleyi SZ]
          Length = 740

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 75/196 (38%), Gaps = 17/196 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ L +A   L  GL +AI      GL       D+ N  A+ RL + K+R    P    
Sbjct: 188 ADPLGQAIALLQQGLIVAIK-----GLGGYHLAVDACNNQAVARLRQRKQRDE-KPFAVM 241

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D+   ++ A ++ L   L     P    +++   + T +  L   + +     +    
Sbjct: 242 VPDLVTARQLAELEELEERLLAA--PEAPVVIVRSRTATPVAELVAPDSRWIGLMLAYTP 299

Query: 124 TKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTI 180
             +L+        L + SAN S +  +++     +  +      I+    + ++  + ++
Sbjct: 300 LHQLLFADTGLKALVMTSANASDEPMLSDDAEA-AEQLAGIADAILTHNRVIQVRTDDSV 358

Query: 181 VNVQCEKKVRILRPGG 196
           + V   + +   R  G
Sbjct: 359 LRVFQGRPLFYRRSRG 374


>gi|317493797|ref|ZP_07952214.1| hydrogenase maturation protein HypF [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918124|gb|EFV39466.1| hydrogenase maturation protein HypF [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 772

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 16/166 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
              L +A   L  G  +A     V  L       D+    AI+ L + K+R    P    
Sbjct: 206 PEPLAQARRMLRDGQILA-----VKSLGGFHLSVDATQENAIKLLRQRKRRD-DKPFAIM 259

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           V D++ V++   V        +     P+ ++L   S   +         +    +P   
Sbjct: 260 VKDMATVRRFCEVSSEEERYLQSH-QRPI-VILKKRSDCSLPDAIAPANPSLGVMLPSAP 317

Query: 124 TKKLIETYGH--PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L+        L + SANRSG   +   +  ++  + +   + +
Sbjct: 318 LHYLLLDDTALPALVMTSANRSGNPIVFRNEEAVAE-LGQIADVFL 362


>gi|157414902|ref|YP_001482158.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157385866|gb|ABV52181.1| transcriptional regulatory protein hypF [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307747540|gb|ADN90810.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 729

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GIGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354


>gi|218562273|ref|YP_002344052.1| carbamoyltransferase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|112359979|emb|CAL34768.1| carbamoyltransferase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 729

 Score = 60.5 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GIGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354


>gi|204928283|ref|ZP_03219483.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204322605|gb|EDZ07802.1| [NiFe] hydrogenase maturation protein HypF [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 746

 Score = 60.5 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           +AG  IA     V GL       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 NAGGIIA-----VKGLGGFHLACDARNDNAVAMLRARKHRPA-KPLAVMLPTAQTL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK-LIETYGH 133
              P +   + L  P    +++D      +       L      +P    +  L++   +
Sbjct: 261 ---PSAAR-SLLTTPAAPIVLVDKQYVPALGEGIAPGLTEVGVMLPANPLQHLLLQALNY 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+      +  L  
Sbjct: 317 PLVMTSGNLSGKPPAITNEQALDD 340


>gi|303231079|ref|ZP_07317819.1| carbamoyltransferase HypF [Veillonella atypica ACS-049-V-Sch6]
 gi|302514210|gb|EFL56212.1| carbamoyltransferase HypF [Veillonella atypica ACS-049-V-Sch6]
          Length = 765

 Score = 60.5 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 15/201 (7%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +      E +  G  IA+      G+       D+ N  A++ L E K R    P    
Sbjct: 211 DDCFETVREMISNGAIIALK-----GIGGYHLVCDATNDKAVQILRERKHR-KDKPFAIM 264

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACFRVPCG 122
              I +V+  A V    L         P+ L+    +    I  L   N       +P  
Sbjct: 265 AGSIDIVEDFAVVSDGDLDALSA-MARPIVLLEKNDNFHASISELVAPNNHLIGVMLPYA 323

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181
               ++  +     + S N SG   I + +   S  +       +         ++ +IV
Sbjct: 324 PIHHVLVPHDAKWVMTSGNASGDSVIYDDEKAFSE-LQTIADYFLTHNRQIYAPVDDSIV 382

Query: 182 NVQCEKKVRILRPGGLEIETL 202
           +V  +  + I R  G   E +
Sbjct: 383 SVVEDTPILIRRSRGYIPEPI 403


>gi|315058036|gb|ADT72365.1| [NiFe] hydrogenase metallocenter assembly protein HypF
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 729

 Score = 60.5 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|57238183|ref|YP_178736.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           RM1221]
 gi|57166987|gb|AAW35766.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           RM1221]
          Length = 729

 Score = 60.5 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|300714968|ref|YP_003739771.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299060804|emb|CAX57911.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 259

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 18/170 (10%)

Query: 14  KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A + L A G  I  PT+  Y +     +   + R ++ K+R    P +     +  +K+
Sbjct: 15  EAVKVLSADGGMIVCPTKVGYIIMTS--DAKGLERKFDAKQRNRNKPGVVLCGSLEQLKE 72

Query: 73  HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRVP--- 120
            A ++P    L +  W     L  +L                 L     +T+CF +    
Sbjct: 73  LAQLNPEIESLYQQHWDQDVLLGCILPWKEDAVARIPEDGSKDLMMDRRQTSCFVIKFGT 132

Query: 121 --CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                 K+L E +G      SAN SG+ +   V+  +   I  +  LII+
Sbjct: 133 PGENLAKELWENHGKFSFASSANPSGKGNRGLVEG-IGERIESQADLIIE 181


>gi|167844512|ref|ZP_02470020.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           B7210]
          Length = 77

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
                +A     ++        A  L+  ++  D +  + I    +P+     A+N+RL 
Sbjct: 8   AGAWAHAAGVHFVAAPEDPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLG 67

Query: 317 R 317
           R
Sbjct: 68  R 68


>gi|86149942|ref|ZP_01068171.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85839760|gb|EAQ57020.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni CF93-6]
          Length = 729

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|297197962|ref|ZP_06915359.1| hypothetical protein
 gi|197715038|gb|EDY59072.1| [NiFe] hydrogenase maturation protein HypF [Streptomyces sviceus
           ATCC 29083]
          Length = 794

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 70/235 (29%), Gaps = 28/235 (11%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPA 56
           +I  +  ++ + +A   L  G  +A     V     Y LA D+ N  A+  L   K R  
Sbjct: 209 RIGDVEGADPVTEARALLKRGAILA-----VKGLGGYHLACDASNQEAVALLRRRKARG- 262

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
             P          V+    + P    L +    P    ++L         P      +  
Sbjct: 263 DKPFAVMARTADDVRHLVRLSPAERSLLEGRARP---VVLLRRRPHPSYAPGDLRPAEAV 319

Query: 116 CFRVPC--------GFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILSSSICKE 162
             R P              L+   G P     L + S N SG+  +T+    L       
Sbjct: 320 APRSPDLGVMLPYTPVHHLLLGLPGDPDGPRLLVMTSGNLSGEPIVTDDNEALERLAHLA 379

Query: 163 IPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDET 217
              +       +  + ++V V   + + I R  G     +   + V     V   
Sbjct: 380 DAWLTHDRPIHVPCDDSVVRVCDGEPLVIRRSRGYAPLPVSLPLPVRPALAVGGD 434


>gi|283954097|ref|ZP_06371622.1| transcriptional regulatory protein hypF [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283794376|gb|EFC33120.1| transcriptional regulatory protein hypF [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 716

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ + L  G  +AI      G+       D+ N  +++ L   K RP   P   
Sbjct: 188 DQEAFIQSAKLLKEGKILAIK-----GMGGFHLMCDAFNEESLKALRLRKNRP-KKPFAL 241

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
               +   K+ A +D       +    G L  ++ L +   +  L   ++      +   
Sbjct: 242 MCKGLQNAKELAFIDEKE----EALLSGVLAPIVILKAKKALS-LIAPDIDKIGIMLAYT 296

Query: 123 FTKKLI-ETYGHPLAIPSANRSGQISITNVKHI-LSSSICKEIPLIIDGGISKIGLESTI 180
               LI E +   L   SAN SG+  I +   + L   +       +D           I
Sbjct: 297 PLHLLIFEYFKGSLVATSANLSGESIIKD--EVNLCQKLDGVFDFYLDYDRE-------I 347

Query: 181 VNVQCEKKVRILRP 194
           +N   +   ++++ 
Sbjct: 348 INASDDSIAQVIKG 361


>gi|284035596|ref|YP_003385526.1| hypothetical protein Slin_0664 [Spirosoma linguale DSM 74]
 gi|283814889|gb|ADB36727.1| hypothetical protein Slin_0664 [Spirosoma linguale DSM 74]
          Length = 185

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 13/162 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR-PAMNPLICHVSDI 67
           + ++R     L  G  IAI  ET + +  D  N TA+  L  +K   PA       + + 
Sbjct: 2   TTSIRDIAYQLRQGKLIAIADETGWSIVADPVNETAVEELLTLKPLMPAGLQPTVIIQNA 61

Query: 68  SMVKKH-ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLS----TANLKTAC----FR 118
             +  + A V  ++  L   F   PLT+V D          S    T N ++       R
Sbjct: 62  DQLGLYVAKVPDVAYDLVD-FAENPLTVVYDQGKNIAGALWSSSDTTKNGQSVGEVAVRR 120

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSIC 160
                 ++LI ++G  L   S      +     + ++     
Sbjct: 121 ALNTDLQRLIGSFGRGLL--SIPLESLVLPAAAETLIVERFG 160


>gi|167901499|ref|ZP_02488704.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167917767|ref|ZP_02504858.1| Sua5/YciO/YrdC/YwlC family protein [Burkholderia pseudomallei
           BCC215]
          Length = 82

 Score = 60.1 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 257 IKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSSIPNHGLGIAINNRLE 316
                +A     ++        A  L+  ++  D +  + I    +P+     A+N+RL 
Sbjct: 13  AGAWAHAAGVHFVAAPEDPAAYARELYGLLRALDRAQVARILVEKLPDTAEWTAVNDRLG 72

Query: 317 R 317
           R
Sbjct: 73  R 73


>gi|220915623|ref|YP_002490927.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953477|gb|ACL63861.1| (NiFe) hydrogenase maturation protein HypF [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 773

 Score = 60.1 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 18/196 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ +R   + L AG   A     V     Y LA D+  P A+R L E K+R    PL   
Sbjct: 213 ADPIRDCADLLRAGGIAA-----VKGLGGYHLACDASAPAAVRTLRERKRR-EEKPLAVM 266

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
           V+D+   +  A V P    L     P    ++        +              +    
Sbjct: 267 VADLDAARALAEVSPAEAALLTS--PERPIVLCRRRPDAALAAEIAPGSPIVGLMLAYAP 324

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII--DGGISKIGLESTI 180
               L+   G PL + SAN S +         L + +     L +  D  I+    +S +
Sbjct: 325 LHHLLLADAGVPLVMTSANLSDEPIAFEDGEAL-ARLAGIADLFLVHDRAIASRCDDS-V 382

Query: 181 VNVQCEKKVRILRPGG 196
             V   + + + R  G
Sbjct: 383 ARVVAGRPMVMRRSRG 398


>gi|262043964|ref|ZP_06017048.1| hydrogenase maturation protein HypF [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038690|gb|EEW39877.1| hydrogenase maturation protein HypF [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 744

 Score = 60.1 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A   L AG  +AI      G+       D+ NP A+  L   K RPA  PL   
Sbjct: 195 EAALQAAIARLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KPLAVM 248

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +   + +         +  L     P    +++     + +       L      +P   
Sbjct: 249 LPTATGL------PAAAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVMLPSNP 300

Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157
            + L+      P+ + S N SG+    +    L+ 
Sbjct: 301 LQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNE 335


>gi|86151536|ref|ZP_01069750.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85841165|gb|EAQ58413.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 729

 Score = 60.1 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN +G+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLNGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|332139750|ref|YP_004425488.1| Hydrogenase maturation protein HypF [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549772|gb|AEA96490.1| Hydrogenase maturation protein HypF [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 768

 Score = 60.1 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 13/142 (9%)

Query: 18  FLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-------DISMV 70
           +L+ G  +A+ +   Y L  D+++  A+  L + K RP   P    +            +
Sbjct: 225 YLNQGKIVALKSIGGYHLLCDAQSTEAVDLLRQRKNRP-DKPFAVMLPEPRADETSEDWL 283

Query: 71  KKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI- 128
            K  +VD  S   A L  P  P+ L+    S   I       L+     +PC     LI 
Sbjct: 284 DKCVAVD--SHQRALLLSPVRPI-LLAKKQSNVPIADNVAPMLRDLGVMLPCSGLHLLIM 340

Query: 129 ETYGHPLAIPSANRSGQISITN 150
           + +  P+   S N  G+  +T+
Sbjct: 341 QQFNRPMVATSGNIYGEPMVTS 362


>gi|300723975|ref|YP_003713289.1| hypothetical protein XNC1_3117 [Xenorhabdus nematophila ATCC 19061]
 gi|297630506|emb|CBJ91171.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 259

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 18/169 (10%)

Query: 14  KACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A E L + G  I  PT+  Y +     +   + R +E K+R    P +     +  +K+
Sbjct: 15  EAVEILSNDGGMIVCPTKVGYIIMTS--DARGLERKFEAKQRNRNKPGVVLCGSLEQLKE 72

Query: 73  HASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV---- 119
            A ++       +  W     L  +L                 L   +  T+CF +    
Sbjct: 73  LAQLNSEIEAFYQKTWDENVLLGCILPWKEEALARIPDDGSKELMMDHRGTSCFVIKFGK 132

Query: 120 PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           P     K + E +G      SAN SG+ +   V   +   I  +  LII
Sbjct: 133 PGEILAKELWEKHGKFSFASSANPSGKGNRGLV-ECIGERIESQADLII 180


>gi|39934050|ref|NP_946326.1| hydrogenase maturation protein HypF [Rhodopseudomonas palustris
           CGA009]
 gi|39647898|emb|CAE26418.1| hydrogenase maturation protein hypF [Rhodopseudomonas palustris
           CGA009]
          Length = 757

 Score = 59.7 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 33/214 (15%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L  G  +A+ +   Y L  D+ +  A+  L   K R A  P    V+  + + 
Sbjct: 197 IEEIVACLRDGRIVALKSLGGYHLLCDATSEAAVAELRRRKGRDA-KPFAVMVASEASLD 255

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--E 129
           +          L       P+ L+ D      + P     L      +P      LI   
Sbjct: 256 RIVIATEAERALVSSV-ERPIVLMRDR---GVLAPSVAPALDAVGVMLPYTPLHHLIFHA 311

Query: 130 TYGHP-------------LAIPSANRSGQISITNVKH-------ILSSSICKEIPLIIDG 169
             G P             L   SAN  G   +T            L  S  ++I +  D 
Sbjct: 312 AMGAPAGRAWQRAPLDLVLVATSANLGGDPIVTEDAQRRLASVADLIVSHDRDIVVRADD 371

Query: 170 GISKI--GLESTIVNVQCEKKVRILRPGGLEIET 201
            ++++  G  S I   +        RP  L  ET
Sbjct: 372 SVARVIDGAPSFIRRARGVTP----RPITLPRET 401


>gi|126659487|ref|ZP_01730620.1| transcriptional regulatory protein; HypF [Cyanothece sp. CCY0110]
 gi|126619221|gb|EAZ89957.1| transcriptional regulatory protein; HypF [Cyanothece sp. CCY0110]
          Length = 764

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 16/200 (8%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMN 58
           +   D+NAL  + + L  G  +A+      GL       + RN  A+  L   K RP   
Sbjct: 197 ILANDNNALNLSIDALKEGKILALK-----GLGGFQLIVNGRNTEAVTELRRRKHRP-HK 250

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P     +    +K    ++ L  +L     P    ++L   +   + P    N       
Sbjct: 251 PFALMYASFKGIKIDCEINNLEENLLTS--PQAPIVLLKRKNNQSLSPDVAPNNPYLGVM 308

Query: 119 VPC-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-L 176
           +P       L+     P+   S N + +    + +  L   +     L +      I  +
Sbjct: 309 LPSTPLHHLLLHKLNFPIVATSGNIASEPICIDEQEAL-QRLENIADLFLVHNRPIIRPV 367

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           + ++V V   +++ I R  G
Sbjct: 368 DDSVVRVIAGREMMIRRARG 387


>gi|238896168|ref|YP_002920904.1| hydrogenase maturation protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238548486|dbj|BAH64837.1| hydrogenase maturation protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 744

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A   L AG  +AI      G+       D+ NP A+  L   K RPA  PL   
Sbjct: 195 EAALQAAIARLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KPLAVM 248

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +   + +         +  L     P    +++     + +       L      +P   
Sbjct: 249 LPTATGL------PAAAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVMLPSNP 300

Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157
            + L+      P+ + S N SG+    +    L+ 
Sbjct: 301 LQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNE 335


>gi|152971570|ref|YP_001336679.1| hydrogenase maturation protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956419|gb|ABR78449.1| hydrogenase maturation protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 744

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 20/155 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             AL+ A   L AG  +AI      G+       D+ NP A+  L   K RPA  PL   
Sbjct: 195 EAALQAAIARLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KPLAVM 248

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +   + +         +  L     P    +++     + +       L      +P   
Sbjct: 249 LPTATGL------PAAAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVMLPSNP 300

Query: 124 TKKLIET-YGHPLAIPSANRSGQISITNVKHILSS 157
            + L+      P+ + S N SG+    +    L+ 
Sbjct: 301 LQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNE 335


>gi|330723664|gb|AEC46034.1| SUA5-like translation suppressor [Mycoplasma hyorhinis MCLD]
          Length = 243

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAK--L 86
           T+T+ GL    +NP  ++++Y +KKRP +  +I  +  I  +    S +    +  +   
Sbjct: 101 TDTLVGLGTFLKNPN-LKQIYLLKKRPLIKKIIILIGKIEQLNSFISKENYQKYQKEFQQ 159

Query: 87  FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQI 146
            WPG  TL+++                   FR+P     + +     P  + SAN S + 
Sbjct: 160 HWPGSTTLIIEKQ----------------GFRIPNNLAIQELLIKEGPAFVTSANISNEK 203

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           ++T  +       C      +  G    G+ S I+++   K +R
Sbjct: 204 NLTL-EQARKKFFCIFNVYNLTIGN---GIASKIIDLDNNKVLR 243


>gi|238755280|ref|ZP_04616624.1| Conserved uncharacterized protein [Yersinia ruckeri ATCC 29473]
 gi|238706514|gb|EEP98887.1| Conserved uncharacterized protein [Yersinia ruckeri ATCC 29473]
          Length = 259

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 20/170 (11%)

Query: 14  KACEFL-DAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71
           +A E L + G  I  PT+  Y +     +  A + R +E K+R    P +     +  +K
Sbjct: 15  EAIEILSNNGGMIVCPTKVGYII---MTSDKAGLERKFEAKQRNRNKPGVVLCGSLEQLK 71

Query: 72  KHASVDPLSLHLAKLFWPGP--LTLVLDLL-------STTDIHPLSTANLKTACFRV--- 119
           + A ++     L +  W     L  +L                 L     +T+CF +   
Sbjct: 72  ELAQLNAEIEQLYQQHWDADVLLGCILPWKEDALARIPDDGSKELMMDGRQTSCFVIKFG 131

Query: 120 -PCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            P     K + E +       SAN SG+ +   V+  +   I +   LII
Sbjct: 132 KPGEILAKELWENHAKFSFASSANPSGKGNRGLVEG-IGDRIEERADLII 180


>gi|146301649|ref|YP_001196240.1| (NiFe) hydrogenase maturation protein HypF [Flavobacterium
           johnsoniae UW101]
 gi|146156067|gb|ABQ06921.1| (NiFe) hydrogenase maturation protein HypF [Flavobacterium
           johnsoniae UW101]
          Length = 756

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 58/166 (34%), Gaps = 4/166 (2%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++S T+        E L+ G  IA+   + Y L  D  N   ++ L   K+R A  P   
Sbjct: 197 LISGTNKEIFESISEKLNQGQIIAVKNTSGYLLLCDGSNNQTVQELRNRKRRSA-KPFAV 255

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
             SD   +KKH   D     L K     P+ ++               N+KT    +P  
Sbjct: 256 LFSDFKQIKKHLLHDKTEKKLLKS-TQAPIVILPIKNQKKLAVNEIAPNMKTIGAMLPNS 314

Query: 123 FTKKLIE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               LI   +  PL   S N +G     N    +  S+       +
Sbjct: 315 GILHLISNLFQKPLVATSGNFNGSPLFFNQNEAV-QSLNSIADYYL 359


>gi|304373421|ref|YP_003856630.1| SUA5-like translation suppressor [Mycoplasma hyorhinis HUB-1]
 gi|304309612|gb|ADM22092.1| SUA5-like translation suppressor [Mycoplasma hyorhinis HUB-1]
          Length = 243

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAK--L 86
           T+T+ GL    +NP  ++++Y +KKRP +  +I  +  I  +    S +    +  +   
Sbjct: 101 TDTLVGLGTFLKNPN-LKQIYLLKKRPLIKKIIILIGKIEQLNSFISKENYQKYQKEFQQ 159

Query: 87  FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQI 146
            WPG  TL+++                   FR+P     + +     P  + SAN S + 
Sbjct: 160 HWPGSTTLIIEKQ----------------GFRIPNNLAIQELLIKEGPAFVTSANISNEK 203

Query: 147 SITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
           ++T  +       C      +  G    G+ S I+++   K +R
Sbjct: 204 NLTL-EQARKKFFCIFNVYNLTIGN---GIASKIIDLDNNKILR 243


>gi|240102313|ref|YP_002958621.1| [NiFe] hydrogenase maturation protein (hypF) [Thermococcus
           gammatolerans EJ3]
 gi|239909866|gb|ACS32757.1| [NiFe] hydrogenase maturation protein (hypF) [Thermococcus
           gammatolerans EJ3]
          Length = 772

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 19/203 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKK--RPAMNPLIC 62
           + LRKA E +D G  +AI      G+       D+ N   +  L   K+  RP   P   
Sbjct: 201 DPLRKAAELIDRGYIVAIK-----GIGGIHLACDATNEEVVAELR--KRTFRPQ-KPFAI 252

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
               +  V+  A V          +   P+ + L       +       L T    +P  
Sbjct: 253 MADSLETVRSFAYVSREEEEELTSYR-RPI-ITLRKREPFPLPENLAPGLHTIGVMLPYA 310

Query: 123 FTKKLIETY--GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
            T  ++  +       + SAN  G   + + +            L++         + ++
Sbjct: 311 GTHYILFHWSKTKVYVMTSANYPGMPMVKDNERAFEELRDMADYLLLHNRKILNRADDSV 370

Query: 181 VNVQCEKKVRILRPGGLEIETLK 203
           +     ++  I R  G     ++
Sbjct: 371 IRFVDGRRAVIRRSRGFVPLPIE 393


>gi|325290235|ref|YP_004266416.1| (NiFe) hydrogenase maturation protein HypF [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965636|gb|ADY56415.1| (NiFe) hydrogenase maturation protein HypF [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 826

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 37/232 (15%)

Query: 18  FLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            L+AG  +A     V GL       D+ N   +++L ++K+R +  P      D++  +K
Sbjct: 209 LLEAGAILA-----VKGLGGFHLVCDAGNTETVKKLRQLKERGS-KPFALMARDLAAAQK 262

Query: 73  HASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ET 130
              +  L   L     P  P+ ++  L +   +       + T    +P      L+ + 
Sbjct: 263 AVRITKLEEELLSS--PAAPIVILSRLRAEKALAAEVAPGVHTLGIMLPYTPLHHLLFKG 320

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-----DGGISKIGLESTIVNVQC 185
               L + SAN SG   I   +  L   +       +                ++V V  
Sbjct: 321 AYDFLVMTSANLSGMPLIYENERAL-EELGAIADYFLIHNRDIFHPCDD----SVVQVVA 375

Query: 186 EKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGML------KSHYA 231
              + + R  G     +    +VE+              M       K HYA
Sbjct: 376 GAPLFMRRARGYVPLPVLLEENVEIPAAALGGE------MKNAFCLAKGHYA 421


>gi|153950949|ref|YP_001398142.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938395|gb|ABS43136.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 729

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ +  A++ L   K RP   P   
Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GMGGFHLMCDAFDEKALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|257868604|ref|ZP_05648257.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257802768|gb|EEV31590.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 262

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 17/170 (10%)

Query: 13  RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
             A + L   G  I  PT+  Y +AV   +   + R +  K R    P +   S +  ++
Sbjct: 18  EAAIQLLQQEGKVIVCPTKVGYIIAVS--DKKGLERKFSAKNRKRNKPGVVLCSSLEQLQ 75

Query: 72  KHASVDPLSLHLAKLFWPGPLTL--VLDLLSTTDI------HPLSTANLKTACFR----V 119
           + A  +     + +  W   +    +L    +           L     +T+CF     V
Sbjct: 76  ELAEWNDEIAAVYQKCWDNDVLFGAILPWKESGKAYIPDGSQELMMDTRETSCFVIKFGV 135

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           P     K L E     L   SAN SG+ +   V+  +   I  E  LII+
Sbjct: 136 PGEQIAKALWEEKQQLLFASSANPSGKGNRGLVEG-IGEQIANEADLIIE 184


>gi|126732736|ref|ZP_01748531.1| hydrogenase maturation factor F [Sagittula stellata E-37]
 gi|126706732|gb|EBA05803.1| hydrogenase maturation factor F [Sagittula stellata E-37]
          Length = 732

 Score = 59.7 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 16/149 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           +     L +A   L  G  +A     V GL       D+ N  A+  L   K+RP+  P 
Sbjct: 177 LEPEGGLAEAVTRLARGEVLA-----VKGLGGFYLACDAANVEAVALLRARKRRPS-KPF 230

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                 + ++++ A VD  +  L +   P    ++L   +   +       +    + +P
Sbjct: 231 ALMAP-LDVLRRFARVDDAAEALLRD--PAAPIVLLPKGAEA-LPESVAPGMAELGWMLP 286

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISI 148
                  L+E +G  L + S N SG+   
Sbjct: 287 YTPLHHLLLEAFGGVLVMTSGNLSGEPQA 315


>gi|332701332|ref|ZP_08421420.1| Acylphosphatase [Desulfovibrio africanus str. Walvis Bay]
 gi|332551481|gb|EGJ48525.1| Acylphosphatase [Desulfovibrio africanus str. Walvis Bay]
          Length = 789

 Score = 59.7 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 21/199 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+R+  E L  GL  AI      GL       D+ +  A+  L E K R    PL   
Sbjct: 209 DEAMRRLAEALAEGLVCAIK-----GLGGFHLACDATSAMAVAALRERKNR-RGKPLAVM 262

Query: 64  VSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-- 120
           V ++   ++ A ++      L     P    ++L     + +    + + +     +P  
Sbjct: 263 VPNLDTARRLAEINAEEERWLTGKERP---IVLLRRRPDSPLAADISPDTQFIGVMLPYT 319

Query: 121 --CGFTKKLIE-TYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
                    ++     P L + S N S +      +  L          ++      I  
Sbjct: 320 PLHHVLFHHLQGRVDLPALVMTSGNFSSEPISIGNREALRRLADIADLFLLHDRDILIRT 379

Query: 177 ESTIVNVQCEKKVRILRPG 195
           + +++ V    K + LR  
Sbjct: 380 DDSVLRVLPTGKPQFLRRA 398


>gi|15679291|ref|NP_276408.1| transcriptional regulator HypF-like protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622395|gb|AAB85769.1| transcriptional regulator HypF homolog [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 729

 Score = 59.7 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 75/228 (32%), Gaps = 29/228 (12%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAM 57
           I+   D   ++ A E LD G  +A     V G+        + +   ++RL     RP  
Sbjct: 159 ILKTHDP--IKMAAELLDDGSILA-----VKGIGGTHLVCRADDDEVVKRLRSGLGRP-N 210

Query: 58  NPLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
            P  C   D+  ++ +AS+  +    L     P    +VL       + P     L    
Sbjct: 211 QPFACMSPDLESIESYASISDVEEEALTSRRRP---IVVLKKSRDYCLAPSVAPGLHNIG 267

Query: 117 FRVP-CGFTKKLIETYGHPL-AIPSANRSGQISITNVKHILSSSICKEIPLII--DGGIS 172
             +P  G    L+     P   + SANR G         I+   +       +  D  I 
Sbjct: 268 VMLPYSGLHHVLLRYTEAPAYVMTSANRPGDPMFIENTEIIG-GLQGIADYFLLHDRRIV 326

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP 220
               +S +V  +  +   I R  G   E        E+ +   + S  
Sbjct: 327 NRCDDS-VVRFRGGEMAFIRRSRGYAPE------PYEIPHVAGDVSAI 367


>gi|307611332|emb|CBX00993.1| hydrogenase maturation protein HypF [Legionella pneumophila 130b]
          Length = 741

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ K  + +  G  IA+      GL       D+RN   I +L   K R A  P    V+
Sbjct: 189 SVDKVAQRIQEGEIIALK-----GLGGYQLICDARNEETISKLRLRKNREA-KPFALMVA 242

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           ++   ++ A V    + L       P  +VL       +       L      +P     
Sbjct: 243 NVKSAEEIAEVSC-QVRLVLESRERP--IVLLRKKKAPLPDGIAPGLNHFGIMLPSTPLH 299

Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            L+     G+P             L + SAN  G+  I + K      +      II   
Sbjct: 300 YLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGGEPLIIDDKKA-EQGLNSIADKIISHD 358

Query: 171 ISKIG-LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
              I   + ++V +  +  V I R  G     L+  +  E+   V
Sbjct: 359 REIITRTDDSVVRMINDTSVLIRRARGYVPAPLR--LPYEIPPTV 401


>gi|82702792|ref|YP_412358.1| (NiFe) hydrogenase maturation protein HypF [Nitrosospira
           multiformis ATCC 25196]
 gi|82410857|gb|ABB74966.1| (NiFe) hydrogenase maturation protein HypF [Nitrosospira
           multiformis ATCC 25196]
          Length = 770

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 19/161 (11%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            I    AL  +   L  G  +A     V G+       D+RN TAI +L   K RP   P
Sbjct: 207 RINGPAALTASVTALRRGEIVA-----VKGIGGYHLMCDARNETAIGQLRTNKHRP-HKP 260

Query: 60  LICH---VSD--ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           L        D  ++ V+    +D     L +   P    ++L     + +    T  ++ 
Sbjct: 261 LALMFPWCGDDGLAQVRDELEIDAQGQALLRA--PARPIVLLRRRRDSMLPRSITPGIRE 318

Query: 115 ACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
               +P       L+     P+   S N SG+  +T     
Sbjct: 319 IGVMLPYSPLHHLLLHELDKPVVATSGNVSGEPVLTANAEA 359


>gi|302876197|ref|YP_003844830.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           cellulovorans 743B]
 gi|307686928|ref|ZP_07629374.1| hydrogenase maturation protein HypF [Clostridium cellulovorans
           743B]
 gi|302579054|gb|ADL53066.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           cellulovorans 743B]
          Length = 773

 Score = 59.3 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 55/158 (34%), Gaps = 6/158 (3%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA ++ +   +++L  +KKR +  P    V+D  M +K+  V      L       P  +
Sbjct: 227 LAANALDEKIVKKLRLLKKRDS-KPFAIMVNDTKMAEKYMEVSEEEKKLLNGV-ERP--I 282

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH--PLAIPSANRSGQISITNVK 152
           VL       +      N  +    +P      L+   G    L + S N SG+  +    
Sbjct: 283 VLLKKKPHMLPDAIAPNNPSYGVMLPSAPLHYLLLEDGRLEALIMTSGNISGEPIVYENN 342

Query: 153 HILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
             +          I++       ++ +IV       +R
Sbjct: 343 EAIKQLNSIADYFILNNRDIYTRVDDSIVRYSNSNSLR 380


>gi|302878791|ref|YP_003847355.1| (NiFe) hydrogenase maturation protein HypF [Gallionella
           capsiferriformans ES-2]
 gi|302581580|gb|ADL55591.1| (NiFe) hydrogenase maturation protein HypF [Gallionella
           capsiferriformans ES-2]
          Length = 772

 Score = 59.3 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 27/177 (15%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            +  ++ L +    L AG  +A+      G+        + N  A+ RL  +K+R    P
Sbjct: 204 PVETADPLVQTASLLRAGQIVALK-----GVGGFHLVCMADNQAAVNRLRALKQRDE-KP 257

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               V +    + +  V      L +     P+ L+    +  +  P    +L      +
Sbjct: 258 FAVMVLNTRSAQHYGVVSADEAFLLETG-ERPIVLLGKHPACDEDLPCVAPDLSHIGLLL 316

Query: 120 PCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICK 161
           P      L+  E  GHP             L + SAN  G+  + N     +S +  
Sbjct: 317 PYTPLHYLLFHELLGHPDGINWLQQATKIALVMTSANAGGEPLVINDDEARASRLAD 373


>gi|312865184|ref|ZP_07725412.1| conserved hypothetical protein [Streptococcus downei F0415]
 gi|311099295|gb|EFQ57511.1| conserved hypothetical protein [Streptococcus downei F0415]
          Length = 261

 Score = 59.3 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 29/215 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVS 65
           D N  ++  E +   G  I  PT+  Y +     +  A + R +  K R    P +    
Sbjct: 8   DGNLSQEGLEIVKGEGGCIVCPTKVGYII---MTSDKAGLERKFAAKNRKRNKPGVVLCG 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKT 114
            +  ++  A + P      +  W   + L  +L                   L T + KT
Sbjct: 65  SMDELRALAQLTPEIESFYQKHWDQDILLGCILPWKEEAYAKLQAFGDGREELMTDSRKT 124

Query: 115 ACFRVPCGFTKKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +CF +  G   + I     E  G  +   SAN SG+ +   V+  +   I + + L+I+ 
Sbjct: 125 SCFVIKFGVAGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIEEAVDLVIEA 183

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKR 204
                 + S    +Q +K V      G+ +  + +
Sbjct: 184 DDY---VAS----IQPDKNVETRYEQGVMVSMVDK 211


>gi|296104312|ref|YP_003614458.1| hypothetical protein ECL_03975 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058771|gb|ADF63509.1| hypothetical protein ECL_03975 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 259

 Score = 59.3 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 18/170 (10%)

Query: 14  KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A   L A G  I  PT+  Y +     +   + R +E K+R    P +     +  +K 
Sbjct: 15  EAINVLSAEGGMIVCPTKVGYIIMTS--DKEGLERKFEAKQRNRNKPGVVLCGSMEQLKS 72

Query: 73  HASVDPLSLHLAKLFWPGP--LTLVLDL-------LSTTDIHPLSTANLKTACFRVPCG- 122
            A ++P      +  W     L  +L         L    +  L     KT+CF +  G 
Sbjct: 73  LAEMNPEIEAFYQAHWDADVLLGCILPWREDAIARLPDNGLKELMMDGRKTSCFVIKFGK 132

Query: 123 ----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                 K L E +       SAN SG+ +   V   +   I     LII 
Sbjct: 133 PGEMIAKDLWENHQKFSFASSANPSGKGNRGMV-EFIGERIESRADLIIC 181


>gi|83630700|gb|ABC26865.1| HypF [Bradyrhizobium sp. UPM1167]
          Length = 751

 Score = 59.3 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 27/175 (15%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
           S+ +      +  G  +AI      GL       D+RN  A++RL   K R    P    
Sbjct: 191 SHGINAIVAAIADGQIVAIK-----GLGGYQLLCDARNQDAVQRLRSRKHR-LQKPFAVM 244

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--- 120
           V    +V + A  +   L L +     P+ L   L S  ++ P     L      +P   
Sbjct: 245 VGSTELVNEIAEANGAELALLESVA-RPVVL---LPSRNNLAPAIAPGLSRVGVMLPVVA 300

Query: 121 -CGFTKKLIETYG------HP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                   + + G       P +   SAN  G+  + +    L   +     L++
Sbjct: 301 LHHLIFHALRSTGAWLEGACPVMVATSANSCGEPLLIDNAQAL-WRLEGIADLVV 354


>gi|126460170|ref|YP_001056448.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum
           calidifontis JCM 11548]
 gi|126249891|gb|ABO08982.1| (NiFe) hydrogenase maturation protein HypF [Pyrobaculum
           calidifontis JCM 11548]
          Length = 745

 Score = 59.3 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 6/154 (3%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM- 69
           ++ +  + +  G  +A+ +   + LA  + N   + +L E K R    P       +   
Sbjct: 201 SIAEVAKLVKEGYIVAVKSTGGFHLAALADNDDVVLKLRERKMRKR-QPFAVM--SLEEV 257

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           + K   +   +L + K   P    L+L     + +    +  L      +P       + 
Sbjct: 258 LPKLVHLSDEALAILKS--PQRPILLLPKREGSPVSKWVSPGLSVEGVFLPYTAYHYELL 315

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163
                L + SANR G+ + T+ + ++   +   I
Sbjct: 316 QGAGFLIMTSANRHGRPTCTSEECVIEQKLADYI 349


>gi|118592880|ref|ZP_01550269.1| (NiFe) hydrogenase maturation protein HypF [Stappia aggregata IAM
           12614]
 gi|118434650|gb|EAV41302.1| (NiFe) hydrogenase maturation protein HypF [Stappia aggregata IAM
           12614]
          Length = 776

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 94/304 (30%), Gaps = 63/304 (20%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           L +A   + AG  +A     V G+       D+RN  A+  L    KR  + PL    +D
Sbjct: 208 LEEAARRIKAGQIVA-----VKGIGGFHLACDARNEKAVAELRLR-KRRRVKPLALMAAD 261

Query: 67  ISMVKKHASVDPLSL-HLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFT 124
           ++ ++ +  V P     L+    P    +VL  +    + P          F +P     
Sbjct: 262 LAGIRAYCRVSPEEQTALSSPAAP----IVLLRMDGKHLAPSLVPGQDQLGFMLPYTPLH 317

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNV 183
            +L++  G PL   S N S +   T       + +     L +      +  L+ ++V V
Sbjct: 318 HQLLKETGGPLVFTSGNLSDEPQAT-ANDDARTRLTGIADLWLMHDRDIVNRLDDSVVRV 376

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
                  + R  G     +           + E     +P            V      +
Sbjct: 377 NTTGPQVLRRARGFAPAPI----------VLPEAFAEAAP------------VLAMGGEL 414

Query: 244 NPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFN--------LFNYMKIADDSGAS 295
                L++ G   +               G L+EAA +        L+   +        
Sbjct: 415 KSAFCLLKDGQAILSQH-----------LGDLEEAATHAEYRKTLALY---RQLYRHEPK 460

Query: 296 SIAF 299
            IA 
Sbjct: 461 VIAV 464


>gi|53728951|ref|ZP_00134400.2| COG0068: Hydrogenase maturation factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208794|ref|YP_001054019.1| carbamoyltransferase HypF [Actinobacillus pleuropneumoniae L20]
 gi|126097586|gb|ABN74414.1| carbamoyltransferase HypF [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 761

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+  A + L  G  +A     V GL       D+     I  L   K RP+  P    V
Sbjct: 209 SAILAAADKLRQGYIVA-----VKGLGGFHLACDATQAKTIDLLRHRKVRPS-KPFAVMV 262

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            ++  + + A  + L L  +      P+ ++L       +H L   +L      +P    
Sbjct: 263 PNLDRLTELAEEERLLLQSSAA----PI-VLLAKHKVRGVHDLVAPDLAEIGVMLPSNPL 317

Query: 125 KKLIE-TYGHPLAIPSANRSGQISITNVKHILSS 157
           + L+      PL + S NRSG     + +  L S
Sbjct: 318 QHLLMHEVNMPLIMTSGNRSGLPPALDNRDALDS 351


>gi|331266246|ref|YP_004325876.1| hypothetical protein SOR_0875 [Streptococcus oralis Uo5]
 gi|326682918|emb|CBZ00535.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 259

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E   D + +P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGDRSISP-AP 228


>gi|192289577|ref|YP_001990182.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris TIE-1]
 gi|192283326|gb|ACE99706.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris TIE-1]
          Length = 757

 Score = 58.9 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 48/157 (30%), Gaps = 20/157 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L  G  +A+ +   Y L  D+ +  A+  L   K R A  P    V+  + + 
Sbjct: 197 IEEIVACLRDGRIVALKSLGGYHLLCDATSEAAVVELRRRKGRDA-KPFAVMVASEASLD 255

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--E 129
           +          L       P+ L+ D  +   + P     L      +P      LI   
Sbjct: 256 RIVIATEAERALVSSV-ERPIVLMRDRGA---LAPSVAPALDAVGVMLPYTPLHHLIFHA 311

Query: 130 TYGHP-------------LAIPSANRSGQISITNVKH 153
             G P             L   SAN  G   +T    
Sbjct: 312 AMGAPAGREWQRAPVDLALVATSANLGGDPIVTEDAQ 348


>gi|51244429|ref|YP_064313.1| hydrogenase accessory protein HypF [Desulfotalea psychrophila
           LSv54]
 gi|50875466|emb|CAG35306.1| probable hydrogenase accessory protein HypF [Desulfotalea
           psychrophila LSv54]
          Length = 782

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 18/201 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            I   + L      L A   +AI      GL       ++    A+ +L E K+RP   P
Sbjct: 196 KIETKSPLTDTAVALAANKLVAIR-----GLGGFHLSCNALEEKAVAQLRERKRRP-HKP 249

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   V  I + KK+  +    + L       P+ ++L     TD+      ++      +
Sbjct: 250 LAIMVQSIDIAKKYCFISEQEIALLSSI-EHPI-VLLQKRPDTDLAQGLAPHITELGIML 307

Query: 120 PCGFTKKLI-ETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG- 175
                  L+ +    P  L + S N SG    T     +   +   +   +      +  
Sbjct: 308 AYTPLHHLLFQESTCPQALVMTSGNSSGTPICTGNAEAI-DRLGPIVDNFLLHNRDIVTR 366

Query: 176 LESTIVNVQCEKKVRILRPGG 196
           ++ ++  V  +K + + R  G
Sbjct: 367 IDDSVTRVSGKKPLILRRARG 387


>gi|260891193|ref|ZP_05902456.1| translation factor [Leptotrichia hofstadii F0254]
 gi|260859220|gb|EEX73720.1| translation factor [Leptotrichia hofstadii F0254]
          Length = 114

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 111 NLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           N++T   R+P      ++I+  G  L   SAN SG+ ++T V   LS  + K   +II  
Sbjct: 18  NMETIGIRIPKNETALEIIKKSGGVLLTTSANISGENAVTKV-EKLSEELIKNADIIISN 76

Query: 170 GISK-IGLESTIVNVQCEKKVRILRPGGLEIETL 202
              K  G  STIV  + + K+ +LR G +  E +
Sbjct: 77  EKVKLTGKPSTIVKYE-DGKLTLLREGNIAFEEI 109


>gi|332159109|ref|YP_004424388.1| hydrogenase expression/formation regulatory protein [Pyrococcus sp.
           NA2]
 gi|331034572|gb|AEC52384.1| hydrogenase expression/formation regulatory protein [Pyrococcus sp.
           NA2]
          Length = 773

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 23/205 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAI----RRLYEIKKRPAMNPL 60
           + LRKA + +D G  +AI      G+       D+ N   +    +R++    RP   P 
Sbjct: 202 DPLRKAAKLIDKGYIVAIK-----GIGGIHLACDATNDEIVKELRKRIF----RPQ-KPF 251

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                D+  VK  A V          +   P+ + L       +       L T    +P
Sbjct: 252 AIMARDLETVKTFAYVSKEEEEELTSYR-RPI-VALRKKEPFPLPESLAPGLHTIGVMLP 309

Query: 121 CGFTKKLIETYG-HPL-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
              T  ++  +   P+  + SAN  G   I   +            L++         + 
Sbjct: 310 YAGTHYILFHWSETPVYVMTSANFPGMPMIKENEEAFEKLKDVADYLLLHNRRIPNRADD 369

Query: 179 TIVNVQCEKKVRILRPGGLEIETLK 203
           ++V     K+  I R  G     ++
Sbjct: 370 SVVRFVDGKRAVIRRSRGFVPLAIE 394


>gi|148643166|ref|YP_001273679.1| hydrogenase maturation factor, HypF [Methanobrevibacter smithii
           ATCC 35061]
 gi|148552183|gb|ABQ87311.1| hydrogenase maturation factor, HypF [Methanobrevibacter smithii
           ATCC 35061]
          Length = 750

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 19/166 (11%)

Query: 1   MQIMS----ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEI 51
           M+I      I  +N ++ A + L  G  IAI      G+       D+ N  A++ L + 
Sbjct: 184 MKIYKGPEEINSNNPIKVAADKLKEGKIIAIK-----GIGGTHLVVDAYNDKAVKELRKR 238

Query: 52  KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
             RP          D+  VK +A +    +         P+ +VL      +        
Sbjct: 239 LNRP-NQAFAVMSKDLDSVKGYAKLSKKEIATITSN-KRPI-VVLKKNDNYNFPESLAPG 295

Query: 112 LKTACFRVPCGFTKKLIETYG--HPLAIPSANRSGQISITNVKHIL 155
           L      +P      L+   G      + SAN  G+  +   K IL
Sbjct: 296 LHNIGVMLPYSPMHYLLFDEGDIDTYVMTSANTPGEPMMITNKEIL 341


>gi|121535845|ref|ZP_01667644.1| (NiFe) hydrogenase maturation protein HypF [Thermosinus
           carboxydivorans Nor1]
 gi|121305560|gb|EAX46503.1| (NiFe) hydrogenase maturation protein HypF [Thermosinus
           carboxydivorans Nor1]
          Length = 750

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 48/163 (29%), Gaps = 14/163 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +        +  G  +A     V     Y LA D++N  A++ L E K R    P     
Sbjct: 199 DVFDAVRALVADGHIVA-----VKGIGGYHLACDAKNVAAVKALRERKIR-EDKPFAVMC 252

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
             ++ V++   + P    L       P+ ++L      D+              +P    
Sbjct: 253 GSLAAVRRRCQLSPAEEELLTGI-VRPI-VLLAKSEGYDLADSVAPGNPYLGVMLPYAPV 310

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             L+        + S N S +    +        +       +
Sbjct: 311 HWLLLGEDDVWVMTSGNTSDEPIAYDDADA-RERLAGIADYFL 352


>gi|227541074|ref|ZP_03971123.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227183334|gb|EEI64306.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 760

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 30/147 (20%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            K  +  D+G  +A     V G+       D+RN   + +L + K+RP   P    V   
Sbjct: 239 EKVSKLFDSGAIVA-----VKGIGGFHLMCDARNEETVEKLRQRKQRP-DKPFAVMVPRT 292

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           S  +  A+   L     +                  + P     L       P     +L
Sbjct: 293 SEPQTAAAPIELVNDFDE-----------------PLAPSVNPRLSRVGIFSPYSPLHEL 335

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154
           I     PL   S N S +  IT     
Sbjct: 336 I--CDRPLVATSGNLSSEPLITTNDDA 360


>gi|227489480|ref|ZP_03919796.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090658|gb|EEI25970.1| [NiFe] hydrogenase maturation protein HypF [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 760

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 30/147 (20%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            K  +  D+G  +A     V G+       D+RN   + +L + K+RP   P    V   
Sbjct: 239 EKVSKLFDSGAIVA-----VKGIGGFHLMCDARNEETVEKLRQRKQRP-DKPFAVMVPRT 292

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           S  +  A+   L     +                  + P     L       P     +L
Sbjct: 293 SEPQTAAAPIELVNDFDE-----------------PLAPSVNPRLSRVGIFSPYSPLHEL 335

Query: 128 IETYGHPLAIPSANRSGQISITNVKHI 154
           I     PL   S N S +  IT     
Sbjct: 336 I--CDRPLVATSGNLSSEPLITTNDDA 360


>gi|238784611|ref|ZP_04628617.1| Carbamoyltransferase hypF [Yersinia bercovieri ATCC 43970]
 gi|238714480|gb|EEQ06486.1| Carbamoyltransferase hypF [Yersinia bercovieri ATCC 43970]
          Length = 762

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 23/210 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +AL +A + L AG  +AI      GL       D+ N  A+ RL   K+RP+  PL   +
Sbjct: 202 SALEQAAQALLAGEIVAIK-----GLGGFHLAVDATNAAAVARLRRRKQRPS-KPLAVML 255

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
                + +          L  L  P    +++     + +       L      +     
Sbjct: 256 PSEEWLTRCVQSADNDALLRLLRSPAAPIVLVAKQPDSPLCAAVAPQLAEIGVMLAANPL 315

Query: 125 KK-LIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +  L++    PL + S N SG+    + +  LS+     +  I D  +        IV  
Sbjct: 316 QHLLLQQVARPLVMTSGNGSGKPPALSNEQALSA-----LSDIADHWLLHNRQ---IVQR 367

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYC 213
             +  VR    G    E L+RA     + C
Sbjct: 368 ADDSLVRFTAQGA---EMLRRARGYVPDSC 394


>gi|288869653|ref|ZP_05975457.2| [NiFe] hydrogenase maturation protein HypF [Methanobrevibacter
           smithii DSM 2374]
 gi|288860826|gb|EFC93124.1| [NiFe] hydrogenase maturation protein HypF [Methanobrevibacter
           smithii DSM 2374]
          Length = 750

 Score = 58.9 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 19/166 (11%)

Query: 1   MQIMS----ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEI 51
           M+I      I  +N ++ A + L  G  IAI      G+       D+ N  A++ L + 
Sbjct: 184 MKIYKGPEEINSNNPIKVAADKLKEGKIIAIK-----GIGGTHLVVDAYNDKAVKELRKR 238

Query: 52  KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
             RP          D+  VK +A +    +         P+ +VL      +        
Sbjct: 239 LNRP-NQAFAVMSKDLDSVKGYAKLSKKEIATITSN-KRPI-VVLKKNDNYNFPESLAPG 295

Query: 112 LKTACFRVPCGFTKKLIETYG--HPLAIPSANRSGQISITNVKHIL 155
           L      +P      L+   G      + SAN  G+  +   K IL
Sbjct: 296 LHNIGVMLPYSPMHYLLFDEGDIDTYVMTSANTPGEPMMITNKEIL 341


>gi|302670769|ref|YP_003830729.1| hydrogenase maturation protein HypF [Butyrivibrio proteoclasticus
           B316]
 gi|302395242|gb|ADL34147.1| hydrogenase maturation protein HypF [Butyrivibrio proteoclasticus
           B316]
          Length = 803

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 6/158 (3%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           ++++ A + L+    I +   + Y L     N  A+ +L   K R    P     SDI  
Sbjct: 244 DSVKNAIKLLENNEIIGLKGSSGYQLVCKPVNDAAL-KLRNAKGR-EKKPFAVMFSDIDS 301

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           ++++  V+     L K     P+ ++L+   + D       + +     +P     +L+ 
Sbjct: 302 IEEYCFVNSKEKELLKSSA-RPI-VLLNTKESFD--YEVCKDSRYIGAFLPSVGIHRLLC 357

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               PL + SANRS +  I +    +      ++  ++
Sbjct: 358 DAVGPLIVTSANRSDEPIIIDDDIFIKEFTNTQVQAVL 395


>gi|315928829|gb|EFV08094.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 675

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354


>gi|315927358|gb|EFV06702.1| NiFe/hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 729

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354


>gi|57167650|ref|ZP_00366790.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter coli
           RM2228]
 gi|57020772|gb|EAL57436.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter coli
           RM2228]
          Length = 713

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 184 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 237

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 238 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 292

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 293 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 338


>gi|301057539|ref|ZP_07198624.1| carbamoyltransferase HypF [delta proteobacterium NaphS2]
 gi|300448359|gb|EFK12039.1| carbamoyltransferase HypF [delta proteobacterium NaphS2]
          Length = 745

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 69/200 (34%), Gaps = 18/200 (9%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
            I   + +R+    L  G  +AI      GL       D+ N  A+ RL + K+R     
Sbjct: 196 RIPCDDPIRETVFLLGEGAILAIK-----GLGGFHLCVDACNHGAVIRLRQRKQR-EEKS 249

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   V D+ M +   S+DP+   L       P+ ++L       +      + +     +
Sbjct: 250 LAVMVRDLKMARGLVSMDPIESGLLGS-RQKPI-VLLPKKPRLHLSEAVAPHNRYLGVML 307

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKI--GL 176
           P       L+E +  PL + S N S +    +        +       +         G 
Sbjct: 308 PYTPLHVLLMEGFAGPLVMTSGNVSEEPITHDNASAFR-KLHGIADYFLTHNRDIHLRGD 366

Query: 177 ESTIVNVQCEKKVRILRPGG 196
           +S +V V      +I R  G
Sbjct: 367 DS-VVRVVNGVPRQIRRSRG 385


>gi|296242361|ref|YP_003649848.1| (NiFe) hydrogenase maturation protein HypF [Thermosphaera aggregans
           DSM 11486]
 gi|296094945|gb|ADG90896.1| (NiFe) hydrogenase maturation protein HypF [Thermosphaera aggregans
           DSM 11486]
          Length = 763

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 19/204 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            N + +A + +D G  IA     V     Y +A  +     + +L   K RP   P    
Sbjct: 201 DNPIVEAAKLIDEGSIIA-----VKGIGGYHIAASATMDDVVLKLRRRKNRP-TKPFAIM 254

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV---P 120
             D S++K    +      L     P    L+L     T +    +  L      V   P
Sbjct: 255 GLDTSILKLLVYLSEEDEKLLSS--PQAPILLLPKREDTPVSKYVSPGLSHEGVFVAYTP 312

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LEST 179
             F   L+ T      + S N +G    T  +    S +       +      +  ++ +
Sbjct: 313 LHFLL-LMNTKDKFSIMTSGNSTGSPMCTT-EECAKSRMRSIADYFLVHNRVIVNRVDDS 370

Query: 180 IVNVQCEKKVRILRPGGLEIETLK 203
           +V    ++ V + R  G     ++
Sbjct: 371 VVRKTGDQYVFLRRSRGYAPRWIR 394


>gi|52842682|ref|YP_096481.1| hydrogenase maturation protein HypF [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629793|gb|AAU28534.1| hydrogenase maturation protein HypF [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 741

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 75/225 (33%), Gaps = 33/225 (14%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ K  + +  G  IA+      GL       D+RN  AI +L   K R A  P    V 
Sbjct: 189 SVDKVAQRIRDGEIIALK-----GLGGYQLICDARNEDAISQLRLRKSREA-KPFALMVV 242

Query: 66  DISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           +    ++ A V P +  + +    P    +VL       +       L      +P    
Sbjct: 243 NAKSAERIAEVSPQARVVLESRERP----IVLLRKKKALLPDEIAPGLNHFGIMLPSTPL 298

Query: 125 KKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
             L+     G+P             L + SAN  G+  I + K      I     ++   
Sbjct: 299 HYLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGGEPLIIDDKKAEQGLISIADKIVSHD 358

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
                  + ++V +  +  V I R  G     L+  +  E+   V
Sbjct: 359 REIITRTDDSVVRMINDTSVLIRRARGYVPAPLR--LPYEIPPTV 401


>gi|88597085|ref|ZP_01100321.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|88190774|gb|EAQ94747.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 84-25]
          Length = 729

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCKKLDKVFDFYLD 354


>gi|260428750|ref|ZP_05782727.1| (NiFe) hydrogenase maturation protein HypF [Citreicella sp. SE45]
 gi|260419373|gb|EEX12626.1| (NiFe) hydrogenase maturation protein HypF [Citreicella sp. SE45]
          Length = 746

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKL-FWPGPLT 93
           LA D+ +  A+  L   K+RPA  P       +  V +HA V      L +    P    
Sbjct: 218 LACDATDAEAVAALRARKRRPA-KPFALMAP-LVQVVRHAEVSEAERALLQDPAAP---- 271

Query: 94  LVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQIS 147
           +VL   +   +            + +P       L    G PL + S N SG+  
Sbjct: 272 IVLLETAGEALPEGLAPGQGRLGWMLPYTPLHHLLCAALGRPLVMTSGNLSGEPQ 326


>gi|83591648|ref|YP_425400.1| hydrogenase maturation protein HypF [Rhodospirillum rubrum ATCC
           11170]
 gi|83574562|gb|ABC21113.1| Hydrogenase maturation protein HypF [Rhodospirillum rubrum ATCC
           11170]
          Length = 768

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 80/222 (36%), Gaps = 36/222 (16%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +++  ++ LR+    + AG  +A+      GL       D+  P  + RL   K+R A  
Sbjct: 204 LTLDPADILRE----IRAGAIVALK-----GLGGFQLICDASQPAPVERLRRGKRRDA-K 253

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLL-STTDIHPLSTANLKTAC 116
           P    V+ ++  +    V   S     L  P  P+ L+     +   +       L T  
Sbjct: 254 PFALLVASLTDARALCDV--RSAEAEALTSPERPIVLLHRRADARPPLAAAIAPGLDTLG 311

Query: 117 FRVPCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICK 161
             +P    + LI  E  G P             L   SANR+G   I     + ++ +  
Sbjct: 312 VMLPVTPLQYLIFHEAAGRPAGTAWLDQPTPLVLVATSANRAGAPLILEGAEV-AAELGA 370

Query: 162 EIPLIIDGGISKIGLEST-IVNVQCEKKVRILRPGGLEIETL 202
           ++ ++ D     +      +V V  ++   + R  G   E +
Sbjct: 371 DVDVLADHDRPILARADDGVVRVLGDQARSVRRGRGQTPEPI 412


>gi|121613174|ref|YP_001000324.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167005270|ref|ZP_02271028.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|87250403|gb|EAQ73361.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 728

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSTKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|227432835|ref|ZP_03914794.1| translation factor (SUA5) [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351420|gb|EEJ41687.1| translation factor (SUA5) [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 262

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 75/206 (36%), Gaps = 25/206 (12%)

Query: 14  KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A   L   G  I  PT+  Y +     +   + R +  K R    P +     +  VK+
Sbjct: 18  EAINILKEDGGMIVSPTKVGYIIMTS--DDQGLERKFTAKNRKRNKPGVVLCGSVEQVKE 75

Query: 73  HASVDPLSLHLAKLFWPGPLTL--VLDLL--STTDIHPLSTANL-----KTACFRV---- 119
            A + P    + +  W   + L  +L     +   I    T NL     +T+CF +    
Sbjct: 76  LAQMTPEIEQMYQQHWDEDILLGCILPWKEEAKIKIPNDGTKNLMMDKRETSCFVIKFGT 135

Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 K++ E YG      SAN SG+ ++  V   +   I     LII+       + S
Sbjct: 136 PSENIAKEMWEKYGKFSFASSANPSGKGNLGLVAG-IGDQIENSADLIIEADDY---VAS 191

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKR 204
               +Q +K +      G+ +  +  
Sbjct: 192 ----IQPDKTLDTRYEQGVMVSMVDE 213


>gi|2183281|gb|AAB60890.1| HypF2 [Ralstonia eutropha H16]
          Length = 806

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 28/170 (16%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           M + D + + +    L  G  +AI      GL       D+ N  A+ RL   K+R    
Sbjct: 208 MPVEDVDPIAETVARLQRGEIVAIK-----GLGGFHLACDAHNADAVARLRSRKQR-EEK 261

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P    V++++   +   +      L       P+ ++L               L      
Sbjct: 262 PFAVMVANLATAAQWGDIGSGEAALLTAS-ERPI-VLLRKHGVDGRFAGVAPGLVWLGVM 319

Query: 119 VPCGFTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKH 153
           +P    + L+  E  G P             L + SAN  G+  +T    
Sbjct: 320 LPYTPLQYLLFHEAAGRPEGLGWLAQPQSLVLVMTSANPGGEPLVTGNDE 369


>gi|322375354|ref|ZP_08049867.1| hypothetical protein HMPREF0849_01070 [Streptococcus sp. C300]
 gi|321279617|gb|EFX56657.1| hypothetical protein HMPREF0849_01070 [Streptococcus sp. C300]
          Length = 259

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADYY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E     +++P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228


>gi|33322151|gb|AAQ06796.1|AF496136_1 hypothetical protein [Lactobacillus delbrueckii subsp. lactis]
          Length = 48

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 191 ILRPGGLEIETLKRAISVEL---EYCVDETSTPQSPGMLKSHYAPR 233
           +LRPG +  E + + +  E+      V +   P++PGM   HYAP 
Sbjct: 3   VLRPGKITPEEISQVLGEEVLINRGQVSDKDVPKAPGMKYRHYAPS 48


>gi|311112217|ref|YP_003983439.1| translation factor (SUA5) [Rothia dentocariosa ATCC 17931]
 gi|310943711|gb|ADP40005.1| probable translation factor (SUA5) [Rothia dentocariosa ATCC 17931]
          Length = 264

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 35/247 (14%)

Query: 15  ACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           A   L   G  I  PT+  Y L   + +   + R ++ K R    P +   + +  + K 
Sbjct: 21  AVATLSGTGGLIVAPTKVGYIL--MATDGEGLERKFDAKLRKREKPGVVLCASLEQLDKL 78

Query: 74  ASVDPLSLHLAKLFWPGPLTL--VLDLLSTTD--IHPLSTANL-----KTACFRV----P 120
           A + P      +  W   + L  +L      +  +   +T  L      T+CF V    P
Sbjct: 79  AQMTPEIREFYRKHWDDDILLGCILPWREDAEKYLPDETTKELARDARATSCFVVRFGTP 138

Query: 121 C-GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
                + L E  G      SAN SG  +   V   +   I   + +I+ G          
Sbjct: 139 AEQIVRALWENEGKLTFASSANPSGIGNKGRVTG-IGDRIENSVDVIVRGDEY------- 190

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP-----GMLK----SHY 230
           + ++Q +K        G+ +  +    ++  E   +   TP +P     G+       H 
Sbjct: 191 VKSIQPDKTDETRHEQGVMVSMVDAEGNLVPEQHGERGVTP-APTLIRKGLDYEEIMRHL 249

Query: 231 APRSQVR 237
           +      
Sbjct: 250 SDSFPSW 256


>gi|289677574|ref|ZP_06498464.1| SUA5/yciO/yrdC, N-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 101

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISI 148
           PGP T ++       +    T   +T   RV    T + +     PL   SAN +G+ + 
Sbjct: 1   PGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPTVRELCALVGPLISTSANPAGRPAA 58

Query: 149 TNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
            +   +       +I  ++ G +      S I ++   + VR 
Sbjct: 59  RSRLRV-EQYFRGQIDGVLGGSLGGRRNPSVIRDIATAQIVRA 100


>gi|225874611|ref|YP_002756070.1| (NiFe) hydrogenase maturation protein HypF [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793547|gb|ACO33637.1| (NiFe) hydrogenase maturation protein HypF [Acidobacterium
           capsulatum ATCC 51196]
          Length = 781

 Score = 58.5 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 12/172 (6%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA D+    A+  L   K R +  P    V+ I+  ++   V PL    A L    P+
Sbjct: 236 YQLACDATREDAVSTLRRRKHR-SEKPFAIMVAGITAAEQLCVVSPL-ERTALLSSQRPI 293

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-----ETYGH--PLAIPSANRSGQ 145
            ++L   +  ++    +    T    +P      L+     E  G   PL + S N S +
Sbjct: 294 -VLLRRKTAANLAASVSPGNPTTGVMLPSTPMHDLLFLALRELAGASIPLVMTSGNLSEE 352

Query: 146 ISITNVKHILSSSICKEIPLIIDGG-ISKIGLESTIVNVQCEKKVRILRPGG 196
               +      + +     L +         ++ ++V V  ++ + I R  G
Sbjct: 353 PIAVDNDEA-EAKLADVADLFVHHNRRIHTRVDDSVVRVIDDEVLPIRRARG 403


>gi|222445399|ref|ZP_03607914.1| hypothetical protein METSMIALI_01033 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434964|gb|EEE42129.1| hypothetical protein METSMIALI_01033 [Methanobrevibacter smithii
           DSM 2375]
          Length = 750

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 19/166 (11%)

Query: 1   MQIMS----ITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEI 51
           M+I      I  +N ++ A + L  G  IAI      G+       D+ N  A++ L + 
Sbjct: 184 MKICKGPEEINSNNPIKVAADKLKEGKIIAIK-----GIGGTHLVVDAYNDKAVKELRKR 238

Query: 52  KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
             RP          D+  VK +A +    +         P+ +VL      +        
Sbjct: 239 LNRP-NQAFAVMSKDLDSVKGYAKLSKKEIATITSN-KRPI-VVLKKNDNYNFPESLAPG 295

Query: 112 LKTACFRVPCGFTKKLIETYG--HPLAIPSANRSGQISITNVKHIL 155
           L      +P      L+   G      + SAN  G+  +   K IL
Sbjct: 296 LHNIGVMLPYSPMHYLLFDEGDIDTYVMTSANTPGEPMMITNKDIL 341


>gi|189500693|ref|YP_001960163.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium
           phaeobacteroides BS1]
 gi|189496134|gb|ACE04682.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium
           phaeobacteroides BS1]
          Length = 767

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 15/159 (9%)

Query: 15  ACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           A   L +   +A     V G+       D+ +  A+  L + K+R    P       I  
Sbjct: 215 AVASLKSSGVVA-----VKGIGGFHLSVDAFDDKAVSALRKRKRR-EEKPFAVMARSIET 268

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE 129
           ++K   ++  +     L  P    ++L   +   +              +P      L+ 
Sbjct: 269 IEKFCDIN--ASEREALCSPQAPVVLLKKKARHGLSEEIAPRNDRLGVMLPYAPLHVLLM 326

Query: 130 TYG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             G   L + SAN S +         +S  + +     +
Sbjct: 327 NRGPEMLVMTSANSSDEPIAIENSEAVS-RLQEIADCYL 364


>gi|309800546|ref|ZP_07694695.1| conserved hypothetical protein [Streptococcus infantis SK1302]
 gi|308115824|gb|EFO53351.1| conserved hypothetical protein [Streptococcus infantis SK1302]
          Length = 259

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKGYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E     +++P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228


>gi|78355602|ref|YP_387051.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218007|gb|ABB37356.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 777

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 51/291 (17%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D+ A+ +  + L  G   AI      GL       D+    A+ RL   KKRP   PL  
Sbjct: 204 DTEAVVQTAKALAKGHIAAIK-----GLGGFHLACDATATAAVDRLRARKKRP-GKPLAV 257

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC- 121
            V D++  +  A +      L +     P+ ++  L   T + P  + +       +P  
Sbjct: 258 MVPDMAAAQALAHIGSGEAALLQSV-ERPI-VLCRLKQGTPLAPQVSPHTDHVGLMLPYT 315

Query: 122 -------GFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
                     ++++       L + S N S +      +  L   +     + +      
Sbjct: 316 PLHHVLFHLYREILPHEACAALVMTSGNMSSEPISLGNREALL-RLHDIADIFLLHNRD- 373

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTP--QSPGMLKSHYA 231
                  + ++ +  V  + P   E + L+RA          +   P   + G       
Sbjct: 374 -------ILIRTDDSVVRVNPDTHEPQFLRRARGYTPRPVFLDGEGPCVMATG------- 419

Query: 232 PRSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNL 282
           P  +  L     +        G++            NL   G  +E A +L
Sbjct: 420 PELKSTLCYTRGDQAFVSQHIGDLQ-----------NLESFGFYREIARHL 459


>gi|327400060|ref|YP_004340899.1| acylphosphatase [Archaeoglobus veneficus SNP6]
 gi|327315568|gb|AEA46184.1| Acylphosphatase [Archaeoglobus veneficus SNP6]
          Length = 768

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 15/148 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           + + +A E +D+G  IAI      GL         +   +  L +I  RP   P      
Sbjct: 195 DGIIRAAELIDSGKIIAIK-----GLGGYHIACITDDEVVWNLRKILNRPQ-QPFAVMAR 248

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+  VK+ A +     +    +   P+T++       +       +L T    +P     
Sbjct: 249 DVEAVKRVAKLSSEEENEMLSYI-RPITVL--RKKDVNSFFAVAPDLDTIGIMLPYAPIH 305

Query: 126 KLIETYGHP--LAIPSANRSGQISITNV 151
            ++  +     + + SAN  G+    + 
Sbjct: 306 HILFRFLKADFIVLTSANMPGEPMFIDD 333


>gi|158314311|ref|YP_001506819.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EAN1pec]
 gi|158109716|gb|ABW11913.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EAN1pec]
          Length = 735

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           S T    L +A   L  G  +A     V GL        + + +A+  L   K R A  P
Sbjct: 132 SPTSDEPLERAAGLLRGGGILA-----VKGLGGYHLAVLAADGSAVATLRRRKHRDA-KP 185

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
               V D++ V++   +DP +  L       P+ LV        +         T    +
Sbjct: 186 FAVMVRDLATVEEMCCLDPTARLLLTGRR-RPIVLVERCRPARRVAEAVAPGTGTLGVML 244

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
           P       L+     P+ + S N S +  + + +  L++
Sbjct: 245 PYTPLHHLLLGLLPGPIVLTSGNISNEPIVYHDEEALAA 283


>gi|306829623|ref|ZP_07462813.1| conserved hypothetical protein [Streptococcus mitis ATCC 6249]
 gi|304428709|gb|EFM31799.1| conserved hypothetical protein [Streptococcus mitis ATCC 6249]
          Length = 259

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E     +++P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228


>gi|288916244|ref|ZP_06410624.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f]
 gi|288352435|gb|EFC86632.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f]
          Length = 840

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LAV + + TA+ +L   K+R    P      D++ V++   VD  +  L       P+
Sbjct: 255 YHLAVLAADETAVAQLRRRKRRD-GKPFALMARDLAEVERLCVVDGTARRLLTCRR-RPI 312

Query: 93  TLVLDLLSTTD-------IHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSG 144
            L+    +  D       I P     ++T    +P       L+     P+ + S N S 
Sbjct: 313 VLLDRRPAPPDGTGTSPCIAPSVAPGVRTLGIMLPYTPLHHLLLGRLPGPIVLTSGNISD 372

Query: 145 QISITNVKHILS 156
           +  +      L+
Sbjct: 373 EPILFRDDEALA 384


>gi|126464928|ref|YP_001040037.1| (NiFe) hydrogenase maturation protein HypF [Staphylothermus marinus
           F1]
 gi|126013751|gb|ABN69129.1| (NiFe) hydrogenase maturation protein HypF [Staphylothermus marinus
           F1]
          Length = 778

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 76/213 (35%), Gaps = 17/213 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +  + +D G  +      V GL        + +   + +L + K RP   P     
Sbjct: 203 DPIIETAKLIDEGYIVG-----VKGLGGYHIAALATSDGVVLKLRKRKHRP-TKPFAIMG 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            DIS++++   +D  +  + +   P    L+L     + +    +  L      V     
Sbjct: 257 LDISVLERLVYIDEEARSILES--PQAPILLLPKREDSPVSKYVSPGLSHEGVFVAYTGL 314

Query: 125 KKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181
             L+  ET    L + S N +G+    N +      + + +   +      +  ++ +++
Sbjct: 315 HYLLLMETRDKFLIMTSGNVTGEPMCIN-EECAREKLSRVVDYFLIHDREIVNRVDDSVL 373

Query: 182 NVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
                K V + R  G     ++    ++ EY  
Sbjct: 374 RNTNGKWVFLRRSRGYAPMWIRIRSDLDGEYIA 406


>gi|306825111|ref|ZP_07458453.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432547|gb|EFM35521.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 259

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|289168054|ref|YP_003446323.1| hypothetical protein smi_1213 [Streptococcus mitis B6]
 gi|288907621|emb|CBJ22458.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 259

 Score = 58.1 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +  K+R    P +     +  ++  A
Sbjct: 17  DILKGKGGCIVCPTKVGYII---MTSDKAGLERKFAAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E     +++P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228


>gi|238926678|ref|ZP_04658438.1| (NiFe) hydrogenase maturation protein HypF [Selenomonas flueggei
           ATCC 43531]
 gi|238885467|gb|EEQ49105.1| (NiFe) hydrogenase maturation protein HypF [Selenomonas flueggei
           ATCC 43531]
          Length = 567

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 17/195 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + L  A   +  G  +A     V     Y LA D+R+ TA+ RL   K R A   L    
Sbjct: 216 DPLAAARRVVAEGGILA-----VKGIGGYHLACDARSETAVARLRRRKHREA-KALAVMA 269

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLL--STTDIHPLSTANLKTACFRVPCG 122
             ++ V+    +      L     P    ++L     +                  +P  
Sbjct: 270 GSLAAVRALCLLSAEEERLLTS--PAAPIVLLARRTDAVRPAAESVAPGNAYLGVMLPYA 327

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIV 181
               L+        + SAN SG+  +          + +    I+      +  ++ ++V
Sbjct: 328 PVHLLLLGADDLWVMTSANLSGEPILYRDAEA-EEGLAEIADAILVHNREIVHRVDDSVV 386

Query: 182 NVQCEKKVRILRPGG 196
            +       + R  G
Sbjct: 387 RIGAGGPQILRRSRG 401


>gi|307709496|ref|ZP_07645953.1| hypothetical protein SMSK564_0740 [Streptococcus mitis SK564]
 gi|307619810|gb|EFN98929.1| hypothetical protein SMSK564_0740 [Streptococcus mitis SK564]
          Length = 259

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E     +++P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228


>gi|146319599|ref|YP_001199311.1| translation factor (SUA5) [Streptococcus suis 05ZYH33]
 gi|146321797|ref|YP_001201508.1| translation factor (SUA5) [Streptococcus suis 98HAH33]
 gi|253752597|ref|YP_003025738.1| hypothetical protein SSUSC84_1759 [Streptococcus suis SC84]
 gi|253754423|ref|YP_003027564.1| hypothetical protein SSU1737 [Streptococcus suis P1/7]
 gi|253756357|ref|YP_003029497.1| hypothetical protein SSUBM407_1807 [Streptococcus suis BM407]
 gi|145690405|gb|ABP90911.1| Putative translation factor (SUA5) [Streptococcus suis 05ZYH33]
 gi|145692603|gb|ABP93108.1| Putative translation factor (SUA5) [Streptococcus suis 98HAH33]
 gi|251816886|emb|CAZ52535.1| conserved hypothetical protein [Streptococcus suis SC84]
 gi|251818821|emb|CAZ56663.1| conserved hypothetical protein [Streptococcus suis BM407]
 gi|251820669|emb|CAR47431.1| conserved hypothetical protein [Streptococcus suis P1/7]
 gi|292559213|gb|ADE32214.1| Putative translation factor (SUA5) [Streptococcus suis GZ1]
 gi|319759012|gb|ADV70954.1| putative translation factor (SUA5) [Streptococcus suis JS14]
          Length = 261

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 74/205 (36%), Gaps = 27/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           + +   G  I  PT+  Y +     +   + R ++ K+R    P +     +  +++ A 
Sbjct: 17  DIIKGEGGVIVCPTKVGYIIMT--ADKAGLERKFDAKERKRNKPGVVLCGSMEELRELAQ 74

Query: 76  VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124
           + P      +  W   + L  +L                   L T    T+CF +  G  
Sbjct: 75  LTPEIDAFYQKHWDEDILLGCILPWKPEAYAKLQAYGDGREELMTDVRGTSCFVIKFGVA 134

Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            + I     E  G  +   SAN SG+ +   V+  +   I  ++ LII+           
Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIASKVDLIIEADDY------- 186

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
           + ++Q +K +      G+ +  + +
Sbjct: 187 VTSIQPDKTIETRYEQGVMVSMVDK 211


>gi|242399470|ref|YP_002994895.1| Hydrogenase maturation protein HypF [Thermococcus sibiricus MM 739]
 gi|242265864|gb|ACS90546.1| Hydrogenase maturation protein HypF [Thermococcus sibiricus MM 739]
          Length = 773

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKK--RPAMNPLIC 62
           + L++A E +D G  +AI      G+       D+ N   +R L   K+  RP   P   
Sbjct: 204 DPLKRAAELIDKGHIVAIK-----GIGGIHIACDATNEETLRELR--KRILRPE-QPFAI 255

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
              D+  ++  A V  +       +   P+ + L       +       L T    +P  
Sbjct: 256 MAKDLETIENFAIVSEIEREELTSYR-KPI-VALRKKEPFPLPETLAPGLPTIGVMLPYA 313

Query: 123 FTKKLIETYGH-PL-AIPSANRSGQISITNVKHILSS 157
            T  ++  Y   P+  + SAN  G   + + +  L  
Sbjct: 314 GTHYILFHYSKSPVYVMTSANYPGMPMVIDNETALKE 350


>gi|288553290|ref|YP_003425225.1| [NiFe] hydrogenase maturation protein HypF [Bacillus pseudofirmus
           OF4]
 gi|288544450|gb|ADC48333.1| [NiFe] hydrogenase maturation protein HypF [Bacillus pseudofirmus
           OF4]
          Length = 779

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+R   + L  G  I     ++     Y LA D + P AI  L EIK RP   PL   
Sbjct: 209 ESAIRGTIDALTEGRII-----SIKGLGGYHLACDMKQPYAITHLREIKSRP-TRPLAVM 262

Query: 64  VSDISMVKKHASVDPLSLHLAKL-FWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +  + +VK++  V      L      P    +VL       +       L T    +P  
Sbjct: 263 MRSLEIVKQYCHVSLKEEELLTSPIMP---IVVLKQKINRSLPNELAPGLTTLGVMLPYT 319

Query: 123 FTKKLIETYGH--PLAIPSANRSGQISITNVKHILS 156
               L+   G    + + SAN SG     + K +  
Sbjct: 320 PLHYLLFKLGGLEGIVLTSANSSGLPIKYHDKDLFE 355


>gi|302024518|ref|ZP_07249729.1| hypothetical protein Ssui0_08229 [Streptococcus suis 05HAS68]
 gi|330833560|ref|YP_004402385.1| hypothetical protein SSUST3_1786 [Streptococcus suis ST3]
 gi|329307783|gb|AEB82199.1| conserved hypothetical protein [Streptococcus suis ST3]
          Length = 261

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 27/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           + +   G  I  PT+  Y +     +   + R ++ K+R    P +     +  +++ A 
Sbjct: 17  DIIKGEGGVIVCPTKVGYIIMT--ADKAGLERKFDAKERKRNKPGVVLCGSMEELRELAQ 74

Query: 76  VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124
           + P      +  W   + L  +L                   L T    T+CF +  G  
Sbjct: 75  LTPEIDAFYQKHWDEDILLGCILPWKPEAYAKLQAYGDGREELMTDVRGTSCFVIKFGVA 134

Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            + I     E  G  +   SAN SG+ +   V+  +   I  ++ LII+       + S 
Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIASKVDLIIEADDY---VAS- 189

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 190 ---IQPDKTIETRYEQGVMVSMVDK 211


>gi|315613280|ref|ZP_07888189.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296]
 gi|315314515|gb|EFU62558.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296]
          Length = 259

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|302872075|ref|YP_003840711.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574934|gb|ADL42725.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 755

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 25/168 (14%)

Query: 14  KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           +A E LD        G  +AI      G+       D  N T ++RL+E K+R    PL 
Sbjct: 199 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNETIVKRLFESKRR-EGKPLA 252

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120
               DI +VKK+  V+     + +  +  P   ++     T+       NL T    R  
Sbjct: 253 LVARDIEVVKKYCHVN----KMEEDIFSSPRCPIILFEKKTEQFSRVNGNLHTLGIMRAY 308

Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 +++  G   L   SAN SG   I +    +   +      ++
Sbjct: 309 TPILDYILKKTGRDFLIATSANLSGIPMIIDEGEAIY-KLEGICDYVL 355


>gi|24379784|ref|NP_721739.1| hypothetical protein SMU.1377c [Streptococcus mutans UA159]
 gi|24377750|gb|AAN59045.1|AE014971_7 conserved hypothetical protein [Streptococcus mutans UA159]
          Length = 261

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 27/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           E +   G  I  PT+  Y +     +   + R +E KKR    P +     +  ++  A 
Sbjct: 17  EIVKGEGGVIVCPTKVGYIIMTS--DKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQ 74

Query: 76  VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124
           + P      +  W   + L  +L   +               L T    T+CF +  G  
Sbjct: 75  LTPEIDAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVA 134

Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            + I     E  G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIESMVDLVIEADDY---VAS- 189

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 190 ---IQPDKTIETRYEQGVMVSMVDK 211


>gi|223933745|ref|ZP_03625718.1| conserved hypothetical protein [Streptococcus suis 89/1591]
 gi|223897587|gb|EEF63975.1| conserved hypothetical protein [Streptococcus suis 89/1591]
          Length = 261

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 27/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           + +   G  I  PT+  Y +     +   + R ++ K+R    P +     +  +++ A 
Sbjct: 17  DIIKGEGGVIVCPTKVGYIIMT--ADKAGLERKFDAKERKRNKPGVVLCGSMEELRELAQ 74

Query: 76  VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124
           + P      +  W   + L  +L                   L T    T+CF +  G  
Sbjct: 75  LTPEIDAFYQKHWDEDILLGCILPWKPEAYAKLQAYGDGREELMTDVRGTSCFVIKFGVA 134

Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            + I     E  G  +   SAN SG+ +   V+  +   I  ++ LII+       + S 
Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIASKVDLIIEADDY---VAS- 189

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 190 ---IQPDKTIETRYEQGVMVSMVDK 211


>gi|323333629|gb|EGA75022.1| Sua5p [Saccharomyces cerevisiae AWRI796]
          Length = 102

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 191 ILRPGGLEIETLKRA-------ISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
           +LRPGG   E + +          VE +  V++    ++PGM   HY+P ++V L   H 
Sbjct: 2   LLRPGGFTYEEIVKLGGEAWSLCKVENKKTVEKGEKVRTPGMKYRHYSPSAKVVLLVPHC 61

Query: 244 NPREALIRFGNVP 256
                L     + 
Sbjct: 62  EGDGILKGVDRME 74


>gi|307704934|ref|ZP_07641825.1| hypothetical protein SMSK597_0927 [Streptococcus mitis SK597]
 gi|307706721|ref|ZP_07643526.1| hypothetical protein SMSK321_0685 [Streptococcus mitis SK321]
 gi|307708798|ref|ZP_07645260.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
 gi|322376806|ref|ZP_08051299.1| hypothetical protein HMPREF0851_00597 [Streptococcus sp. M334]
 gi|307615164|gb|EFN94375.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
 gi|307617806|gb|EFN96968.1| hypothetical protein SMSK321_0685 [Streptococcus mitis SK321]
 gi|307621548|gb|EFO00594.1| hypothetical protein SMSK597_0927 [Streptococcus mitis SK597]
 gi|321282613|gb|EFX59620.1| hypothetical protein HMPREF0851_00597 [Streptococcus sp. M334]
          Length = 259

 Score = 57.8 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +  K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFAAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E     +++P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228


>gi|312127856|ref|YP_003992730.1| (nife) hydrogenase maturation protein hypf [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777875|gb|ADQ07361.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 755

 Score = 57.8 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           L  D  N T ++RL+E K+R    PL     DI +VKK+  V+     + +  +  P   
Sbjct: 227 LVCDPYNETVVKRLFESKRR-EGKPLALVAQDIEVVKKYCHVN----KMEEDIFSSPRCP 281

Query: 95  VLDLLSTTDIHPLSTANLKTACF-RVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVK 152
           ++     T+       NL T    R        +++  G   L   SAN SG   I +  
Sbjct: 282 IILFEKKTEHFSHVNGNLHTLGIMRAYTPILDYILKKTGRDFLIATSANLSGIPMIIDEG 341

Query: 153 HILSSSICKEIPLII 167
             +   +      ++
Sbjct: 342 EAI-QKLEGICDYVL 355


>gi|312134937|ref|YP_004002275.1| (nife) hydrogenase maturation protein hypf [Caldicellulosiruptor
           owensensis OL]
 gi|311774988|gb|ADQ04475.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           owensensis OL]
          Length = 755

 Score = 57.8 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           L  D  N T ++RL+E K+R    PL     DI +VKK+  V+     + +  +  P   
Sbjct: 227 LVCDPYNETIVKRLFESKRR-EGKPLALVARDIEVVKKYCHVN----KMEEDIFSSPRCP 281

Query: 95  VLDLLSTTDIHPLSTANLKTACF-RVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVK 152
           ++     T+       NL T    R        +++  G   L   SAN SG   I +  
Sbjct: 282 IILFEKKTEHFSHVNGNLHTLGIMRAYTPILDYILKKTGRDFLIATSANLSGIPMIIDEG 341

Query: 153 HILSSSICKEIPLII 167
             +   +      ++
Sbjct: 342 EAI-QKLEGICDYVL 355


>gi|320173436|gb|EFW48635.1| NiFe hydrogenase metallocenter assembly protein HypF [Shigella
           dysenteriae CDC 74-1112]
          Length = 766

 Score = 57.8 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 20/155 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             +L+ A   L  G  +AI      G+       D+RN  A+  L   K RPA  PL   
Sbjct: 216 EASLQAAIAQLKMGNIVAIK-----GIGGFHLACDARNSNAVATLRARKHRPA-KPLAVM 269

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +         A   P +     L  P    +++D     ++      +L      +P   
Sbjct: 270 L-------PVADGLPDAARQL-LTTPAAPIVLVDKKYVPELCDDIAPDLNEVGVMLPANP 321

Query: 124 -TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
               L++    PL + S N SG+    + +  L+ 
Sbjct: 322 LQHLLLQELQCPLVMTSGNLSGKPPAISNEQALAD 356


>gi|206890543|ref|YP_002248664.1| [NiFe] hydrogenase maturation protein HypF [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742481|gb|ACI21538.1| [NiFe] hydrogenase maturation protein HypF [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 830

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 13/125 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            N + +A   +  G  +AI      GL       D+RN  A++ L + KKR +  P    
Sbjct: 197 ENPIPEAIRVIKEGKILAIR-----GLGGFHLCCDARNEEAVKELRKRKKR-SNKPFALM 250

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
              +  ++K   V      +       P+ ++L      ++            F +P   
Sbjct: 251 SPSVEAIEKFCFVSDEERKILISLM-RPI-VLLRKKPQCNLPEALALKNAYLGFMLPYTP 308

Query: 124 TKKLI 128
              L+
Sbjct: 309 LHYLL 313


>gi|32265825|ref|NP_859857.1| transcriptional regulatory protein HypF [Helicobacter hepaticus
           ATCC 51449]
 gi|32261874|gb|AAP76923.1| transcriptional regulatory protein HypF [Helicobacter hepaticus
           ATCC 51449]
          Length = 807

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 21/166 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D   L+   + + AG  +AI      G+       ++ N   I+ L   K RP   P   
Sbjct: 207 DIKLLKLIVQKIKAGKIVAIK-----GVGGFNLVANASNVQVIKTLRNRKNRP-HKPFAV 260

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHP-----LSTANLKTAC 116
              ++  +   A ++        L  P  P+ L+     +  I       L    +++  
Sbjct: 261 MFKNLQDISSVAHINEEEKR--ALLSPQAPIVLLERHFKSEGIINEECFNLIAPQIQSVG 318

Query: 117 FRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICK 161
             +P      L+      PL   SAN SG+  IT+ +  L   +  
Sbjct: 319 AILPYNGIMHLLFTLLDMPLIFTSANLSGEPIITHAQE-LRQKLGG 363


>gi|148360073|ref|YP_001251280.1| hydrogenase maturation protein HypF [Legionella pneumophila str.
           Corby]
 gi|296108106|ref|YP_003619807.1| hydrogenase maturation protein HypF [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281846|gb|ABQ55934.1| hydrogenase maturation protein HypF [Legionella pneumophila str.
           Corby]
 gi|295650008|gb|ADG25855.1| hydrogenase maturation protein HypF [Legionella pneumophila 2300/99
           Alcoy]
          Length = 741

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 74/224 (33%), Gaps = 31/224 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ K  + +  G  IA+      GL       D+RN  AI +L   K R A  P    V 
Sbjct: 189 SVDKVAQRIRDGEIIALK-----GLGGYQLICDARNEGAISQLRLRKSREA-KPFALMVV 242

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           +    +K A V P +  L       P  +VL       +       L      +P     
Sbjct: 243 NAKSAEKIAEVSPQA-RLVLESRERP--IVLLRKKKALLPDGIAPGLNHFGIMLPSTPLH 299

Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            L+     G+P             L + SAN  G+  I + K      I     +I    
Sbjct: 300 YLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGGEPLIIDDKKAEQGLISIADKIISHDR 359

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
                 + ++V +  +  V I R  G     L+  +  E+   V
Sbjct: 360 EIITRTDDSVVRMVNDTSVLIRRARGYVPAPLR--LPYEIPPTV 401


>gi|226306146|ref|YP_002766106.1| hydrogenase maturation protein HypF [Rhodococcus erythropolis PR4]
 gi|226185263|dbj|BAH33367.1| probable hydrogenase maturation protein HypF [Rhodococcus
           erythropolis PR4]
          Length = 762

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 21/174 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           ++T   AL +A   L  G  +A     V G+       D+R+   +  L E K RP+  P
Sbjct: 196 AVTGEGALLRARSLLRDGKILA-----VKGIGGFHMACDARDDRVVHDLRERKHRPS-KP 249

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   V D+   +    V              P+ LV    S   + P     +      +
Sbjct: 250 LAVMVRDVREARALGVVGDAEADAM-SSRERPIVLVAK-ASGYTLSPSIAPGIPDIGIML 307

Query: 120 PCGFTKKLIETYGH------PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                + L+            L + SAN  G+  + +   +    +      ++
Sbjct: 308 AYNPIQHLLLGLAGDAAGPAALVMTSANIGGEPILYSDDDL--ERVGDLADGVL 359


>gi|291279920|ref|YP_003496755.1| Ni-Fe hydrogenase maturation protein HypF [Deferribacter
           desulfuricans SSM1]
 gi|290754622|dbj|BAI80999.1| Ni-Fe hydrogenase maturation protein HypF [Deferribacter
           desulfuricans SSM1]
          Length = 758

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 14/150 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+++  + ++ G  IA+      GL       D+ N  AI++L   KKR    P    +
Sbjct: 195 DAIKEVAKVVNDGGIIALK-----GLGGYHLICDATNDEAIKKLRIHKKR-EYKPFAVMI 248

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D++++     +   +     +  P    L+++      +              +     
Sbjct: 249 KDLNILTDKYKLKLSNTEKLIITSPQSPILIVNW-PNHPLSEYVNPLNNRLGIMITYTPL 307

Query: 125 KKLIETYGHP--LAIPSANRSGQISITNVK 152
            KL+  + +   +   S N   +    + +
Sbjct: 308 HKLLLNFINTDFIVATSGNLRDEPIAIDEE 337


>gi|255930125|ref|XP_002556622.1| Pc06g00060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211581235|emb|CAP78999.1| Pc06g00060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 236

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 24/230 (10%)

Query: 1   MQIMSITDSNALRKAC-EFLDAGLPIAIPTETV-YGLAVDSRNPTAIRRLYEIKKRPAMN 58
           M    +       +A  E L  G    +P  +V YG+   + +P A+ R++  K+R    
Sbjct: 1   MSYYKVPSPKEDARAVFEILKRGGIAILPM-SVGYGI--TAIDPDALDRIFRTKQRQPHK 57

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDIHPLSTANL--- 112
                V    + +    + P  + + KL       PL +V    S   I       L   
Sbjct: 58  R-HAMVGSYFLHRDIHILPPKEVGMVKLLTVDLDLPLGIVAPYRSDHPIIQKLPPRLLAQ 116

Query: 113 ----KTACFRVPCGFTKKLIETY----GHPLAIPSANRSGQISITNVKHILSSSICKEIP 164
                T    V  G   + +         PL   SAN +G+     V   +   I +   
Sbjct: 117 SVVEGTLAMLVNGGALLEELSRLAALEQLPLMGSSANITGK-GAKTVVEDIEPEILEVAD 175

Query: 165 LIIDGGISKIGLE---STIVNVQCEKKVRILRPGGLEIETLKRAISVELE 211
           ++ID G  K       ST+++ +  K VR      +  + L+R   +EL 
Sbjct: 176 IVIDYGRQKFHHPRVSSTMIDFRTIKVVRYGACYDVIQDALRRFYGIELP 225


>gi|319947120|ref|ZP_08021354.1| translation factor (SUA5) [Streptococcus australis ATCC 700641]
 gi|319747168|gb|EFV99427.1| translation factor (SUA5) [Streptococcus australis ATCC 700641]
          Length = 261

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 29/225 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLSTT---------DIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWREDAYAKLQAFGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
             + I     E  G  +   SAN SG+ +   V+  +   I   + L+I+       + S
Sbjct: 134 AGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS 189

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
               +Q +K +      G+ +  +     +  E      S    P
Sbjct: 190 ----IQPDKTIETRYEQGVMVSMVDAEGKLIPEQGAGSRSVNTCP 230


>gi|296876579|ref|ZP_06900629.1| probable translation factor (SUA5) [Streptococcus parasanguinis
           ATCC 15912]
 gi|312867629|ref|ZP_07727835.1| conserved hypothetical protein [Streptococcus parasanguinis F0405]
 gi|322389461|ref|ZP_08063013.1| translation factor (SUA5) [Streptococcus parasanguinis ATCC 903]
 gi|296432398|gb|EFH18195.1| probable translation factor (SUA5) [Streptococcus parasanguinis
           ATCC 15912]
 gi|311096692|gb|EFQ54930.1| conserved hypothetical protein [Streptococcus parasanguinis F0405]
 gi|321143839|gb|EFX39265.1| translation factor (SUA5) [Streptococcus parasanguinis ATCC 903]
          Length = 261

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 29/225 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLSTT---------DIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWREDAYAKLQAFGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
             + I     E  G  +   SAN SG+ +   V+  +   I   + L+I+       + S
Sbjct: 134 AGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS 189

Query: 179 TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
               +Q +K +      G+ +  +     +  E      S    P
Sbjct: 190 ----IQPDKTIETRYEQGVMVSMVDAEGKLIPEQGAGSRSVNTCP 230


>gi|288920949|ref|ZP_06415243.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f]
 gi|288347643|gb|EFC81926.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EUN1f]
          Length = 943

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 11/130 (8%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA D+    A+  L   K RP   PL   V+D++   + A +      L     P   
Sbjct: 319 YHLACDAGASDAVALLRARKGRP-DKPLAVMVADLASAARLADLSAAERELLAS--PAAP 375

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI------ETYGHP--LAIPSANRSG 144
            ++    +T  +  L           +       L+           P  L + S NRSG
Sbjct: 376 IVLARRKATAPVSELVAPGSPLIGLLLAYTPLHHLLFTPVPGADVDPPQSLVMTSGNRSG 435

Query: 145 QISITNVKHI 154
           +         
Sbjct: 436 EPICIADDEA 445


>gi|322387942|ref|ZP_08061549.1| translation factor (SUA5) [Streptococcus infantis ATCC 700779]
 gi|321141215|gb|EFX36713.1| translation factor (SUA5) [Streptococcus infantis ATCC 700779]
          Length = 259

 Score = 57.4 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGQRIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E     +++P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228


>gi|209552032|ref|YP_002283948.1| (NiFe) hydrogenase maturation protein HypF [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209539625|gb|ACI59556.1| (NiFe) hydrogenase maturation protein HypF [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 784

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 14/158 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
            I   +A+  A + L  G  +A     V G+       D RNP A+  L   K+R    P
Sbjct: 206 PIPAEDAIEAARDRLADGQILA-----VKGIGGFHLIVDPRNPAAVATLRSRKRR-YKKP 259

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L     D     K  S+        +   P P+ ++LD L+   + P  +A        +
Sbjct: 260 LALMCRDSETASKFVSMGAFEKATLESA-PRPI-VLLDKLAPNPLAPDVSAGTMQHGMML 317

Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILS 156
                  L+       L + SAN S           + 
Sbjct: 318 AYTPIHHLLLDGRFDALIVTSANLSDDPIEFRNDEAIE 355


>gi|296111539|ref|YP_003621921.1| hypothetical protein LKI_07065 [Leuconostoc kimchii IMSNU 11154]
 gi|295833071|gb|ADG40952.1| hypothetical protein LKI_07065 [Leuconostoc kimchii IMSNU 11154]
          Length = 262

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 25/207 (12%)

Query: 13  RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            +A   L   G  I  PT+  Y +     +   + R +  K R    P +     +  VK
Sbjct: 17  EEAINILKEDGGMIVSPTKVGYIIMTS--DDKGLERKFAAKNRKRNKPGVVLCGSVEQVK 74

Query: 72  KHASVDPLSLHLAKLFWPGPLTL--VLDLLST--TDIHPLSTANL-----KTACFRV--- 119
           + A + P    + +  W   + L  +L   +   + I    T +L     +T+CF +   
Sbjct: 75  QLAQMTPEIEQMYQTHWDEDILLGCILPWQAEAISKIPNDGTKDLMMDQRETSCFVIKFG 134

Query: 120 --PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
                  K++ E YG      SAN SG+ +   V   +   I     LII+       + 
Sbjct: 135 TPSENIAKEMWEKYGKFSFASSANPSGKGNRGLVTG-IGDQIENAADLIIEADDY---VA 190

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKR 204
           S    +Q +K +      G+ +  +  
Sbjct: 191 S----IQPDKTLDTRYEQGVMVSMVDE 213


>gi|218904407|ref|YP_002452241.1| hydrogenase maturation protein HypF [Bacillus cereus AH820]
 gi|218536992|gb|ACK89390.1| hydrogenase maturation protein HypF [Bacillus cereus AH820]
          Length = 776

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I      +  T    +
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVAPSNNTYGVML 314

Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDADAI-EQLKGIADYYL 362


>gi|304315411|ref|YP_003850558.1| hydrogenase maturation factor HypF [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588870|gb|ADL59245.1| predicted hydrogenase maturation factor HypF [Methanothermobacter
           marburgensis str. Marburg]
          Length = 766

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 15/158 (9%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           I   N L+ A EFLD G  +A     V G+        + +  A+ +L     RP+  P 
Sbjct: 196 IETDNPLKMAAEFLDEGEILA-----VKGIGGTHLVCRADDEDAVMKLRSRLGRPS-QPF 249

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            C   D+  V+ +A +   +   A      P+ +VL+  S   + P     L      +P
Sbjct: 250 ACMSPDVPSVEVYACISE-AEEKALTSRRRPI-VVLNKNSDYPLAPSVAPGLHNIGVMLP 307

Query: 121 CGFTKKLIETYGHPLA--IPSANRSGQISITNVKHILS 156
                 ++  Y    A  + SAN+ G         I  
Sbjct: 308 YSGMHHVLFRYTAAPAYVMTSANKPGDPMFIRNSEITR 345


>gi|300172567|ref|YP_003771732.1| hypothetical protein LEGAS_0265 [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886945|emb|CBL90913.1| conserved hypothetical protein [Leuconostoc gasicomitatum LMG
           18811]
          Length = 262

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 18/180 (10%)

Query: 14  KACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           +A   L   G  I  PT+  Y +     +   + R +  K R    P +     I  VK+
Sbjct: 18  EAISILKEDGGMIVSPTKVGYIIMTS--DDKGLERKFAAKNRKRNKPGVVLCGSIEQVKE 75

Query: 73  HASVDPLSLHLAKLFWPGPLTL--VLDLL--STTDIHPLSTANL-----KTACFRV---- 119
            A + P    + +  W   + L  +L     + + +    T +L     +T+CF +    
Sbjct: 76  LAQMTPEIEQMYQKHWDEDILLGCILPWKEEAKSKLPNDGTKDLMMDKRETSCFVIKFGT 135

Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 K++   YG      SAN SG+ +   V   +   I     LII+       ++S
Sbjct: 136 PSENIAKEMWGKYGKFSFASSANPSGKGNRGVVAG-IGDQIENAADLIIEANDYVASIQS 194


>gi|290580256|ref|YP_003484648.1| hypothetical protein SmuNN2025_0730 [Streptococcus mutans NN2025]
 gi|254997155|dbj|BAH87756.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 261

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 27/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           E +   G  I  PT+  Y +     +   + R +E KKR    P +     +  ++  A 
Sbjct: 17  EIVKGEGGVIVCPTKVGYIIMTS--DKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQ 74

Query: 76  VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124
           + P      +  W   + L  +L   +               L T    T+CF +  G  
Sbjct: 75  LTPEIDVFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVA 134

Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            + I     E  G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 135 GEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEG-IGERIESMVDLVIEADDY---VAS- 189

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 190 ---IQPDKTIETRYEQGVMVSMVDK 211


>gi|228915869|ref|ZP_04079444.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229185500|ref|ZP_04312680.1| Hydrogenase maturation protein [Bacillus cereus BGSC 6E1]
 gi|228597895|gb|EEK55535.1| Hydrogenase maturation protein [Bacillus cereus BGSC 6E1]
 gi|228843687|gb|EEM88761.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 776

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 19/167 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P    
Sbjct: 207 DNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KPFALM 260

Query: 64  VSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            S +  VK  A +  +  +L ++K     P+ ++L+      I      N  T    +  
Sbjct: 261 SSQLDDVKNFAEITKNEEALLVSKE---RPI-VLLNKKENEYISSDVAPNNNTYGVMLAY 316

Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                LI       L   SAN S +  +      +   +       +
Sbjct: 317 TPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|196042788|ref|ZP_03110027.1| hydrogenase maturation protein HypF [Bacillus cereus 03BB108]
 gi|225865235|ref|YP_002750613.1| [NiFe] hydrogenase maturation protein HypF [Bacillus cereus
           03BB102]
 gi|196026272|gb|EDX64940.1| hydrogenase maturation protein HypF [Bacillus cereus 03BB108]
 gi|225788262|gb|ACO28479.1| [NiFe] hydrogenase maturation protein HypF [Bacillus cereus
           03BB102]
          Length = 776

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 19/167 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P    
Sbjct: 207 DNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KPFALM 260

Query: 64  VSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            S +  VK  A +  +  +L ++K     P+ ++L+      I      N  T    +  
Sbjct: 261 SSQLDDVKNFAEITKNEEALLVSKE---RPI-VLLNKKENEYISSDVAPNNNTYGVMLAY 316

Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                LI       L   SAN S +  +      +   +       +
Sbjct: 317 TPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|118478561|ref|YP_895712.1| hydrogenase maturation protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417786|gb|ABK86205.1| hydrogenase maturation protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 793

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 19/167 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P    
Sbjct: 224 DNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KPFALM 277

Query: 64  VSDISMVKKHASV--DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            S +  VK  A +  +  +L ++K     P+ ++L+      I      N  T    +  
Sbjct: 278 SSQLDDVKNFAEITKNEEALLVSKE---RPI-VLLNKKENEYISSDVAPNNNTYGVMLAY 333

Query: 122 GFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                LI       L   SAN S +  +      +   +       +
Sbjct: 334 TPLHHLILRGNFLALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 379


>gi|283956033|ref|ZP_06373522.1| hypothetical protein
 gi|283792509|gb|EFC31289.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 729

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N  A++ L   K RP   P   
Sbjct: 200 DQEAFMQSSKFLKEGKILAIK-----GMGGFHLMCDAFNEEALKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEESLLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLCQKLDKVFDFYLD 354


>gi|220934450|ref|YP_002513349.1| (NiFe) hydrogenase maturation protein HypF [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995760|gb|ACL72362.1| (NiFe) hydrogenase maturation protein HypF [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 757

 Score = 57.0 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 10/141 (7%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVS-----DISMVKKHASVDPLSLHLAKLF 87
           Y L  D+ +P  + RL E K RP   PL           ++ +++HA        L    
Sbjct: 225 YHLLCDATDPAVVARLRERKHRP-HKPLAVLFPWEGDDGLASLRRHAHPGDAEAALLTG- 282

Query: 88  WPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQI 146
            P    +++ L +   +       L      +P      L+   +G PL   SANRSG+ 
Sbjct: 283 -PERPIVLVTLKADLGLAKGIAPGLSEVGAMLPYSPLHHLLSRDFGAPLVATSANRSGEP 341

Query: 147 SITNVKHILSSSICKEIPLII 167
                  +  +++       +
Sbjct: 342 VFIAAAEV-EAALGSVADAFL 361


>gi|205355472|ref|ZP_03222243.1| transcriptional regulatory protein HypF [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205346706|gb|EDZ33338.1| transcriptional regulatory protein HypF [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 729

 Score = 56.6 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N   ++ L   K RP   P   
Sbjct: 200 DQEAFIQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEVLKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGGVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGSLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|83591002|ref|YP_431011.1| (NiFe) hydrogenase maturation protein HypF [Moorella thermoacetica
           ATCC 39073]
 gi|83573916|gb|ABC20468.1| (NiFe) hydrogenase maturation protein HypF [Moorella thermoacetica
           ATCC 39073]
          Length = 767

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 53/157 (33%), Gaps = 16/157 (10%)

Query: 17  EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            FL  G  +A     V GL       D++N  A++ L   K R A  PL      +   +
Sbjct: 217 RFLQDGKILA-----VKGLGGFHLVCDAKNRAALKTLRRRKGREA-KPLAVMCL-LETAR 269

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           K+  V P    L     P    ++L   +  ++       +KT    +P       L+  
Sbjct: 270 KYCYVGPEEEKLLSS--PQAPIVILTKRADCNLPDELAPGMKTLGIMLPYTPLHLMLLNG 327

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L + S NR+G     +    L   +       +
Sbjct: 328 PLEILVMTSGNRNGLPLAKDNGRAL-EELGGIADYFL 363


>gi|78187316|ref|YP_375359.1| hydrogenase maturation protein HypF [Chlorobium luteolum DSM 273]
 gi|78167218|gb|ABB24316.1| Hydrogenase maturation protein HypF [Chlorobium luteolum DSM 273]
          Length = 719

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 16/155 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  AL  A   L  G  +AI +     L       D+ N +A++RL + K R A  P   
Sbjct: 163 DPAAL--AASRLRDGAVVAIKS-----LGGFHLSVDALNDSAVKRLRDGKGREA-KPFAV 214

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            +   + V  +      +  +A      P+ ++L   + + +              +P  
Sbjct: 215 MMPSTATVLHYCDA-CEAELIALQSAEAPI-VLLKKRAGSHLADSVAPGNDRLGVMLPYT 272

Query: 123 FTKKLIETYG-HPLAIPSANRSGQISITNVKHILS 156
              KL+   G   L + SAN S +  +++    L 
Sbjct: 273 PLHKLLFEQGPEVLVMTSANVSEEPIVSDNDEALH 307


>gi|323698528|ref|ZP_08110440.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio sp.
           ND132]
 gi|323458460|gb|EGB14325.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           desulfuricans ND132]
          Length = 772

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 46/160 (28%), Gaps = 20/160 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             +LR+    L  G   A     V GL       D+ +   + RL E K RP   PL   
Sbjct: 202 DESLRRLARELADGRIAA-----VKGLGGFHLVCDAGSRRTVARLRERKHRP-DKPLAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--- 120
           V D++  ++ A V              P+ L         +      +       +P   
Sbjct: 256 VPDMATARRLALVSQAEEEWLTGIR-RPIVLTAKKRP-FPLARSVAPDTDFVGLMLPYTP 313

Query: 121 -CGFTKKLIETYGHP---LAIPSANRSGQISITNVKHILS 156
                         P   L + S N S +    +    L 
Sbjct: 314 LHHILLHDYAELKGPEAALVMTSGNMSAEPICLDNDEALE 353


>gi|148925978|ref|ZP_01809665.1| transcriptional regulatory protein hypF [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145844964|gb|EDK22068.1| transcriptional regulatory protein hypF [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 706

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A  ++ +FL  G  +AI      G+       D+ N   ++ L   K RP   P   
Sbjct: 200 DQEAFMQSAKFLKEGKILAIK-----GMGGFHLMCDAFNEEVLKTLRLRKNRP-KKPFAL 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D+   K+ A +D     L       P+ ++    + + I P            +   
Sbjct: 254 MCKDLQSAKELAFIDEKEEALLGEVL-APIVILKAKKAFSLIAPDV----DKIGIMLAYT 308

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                L E +   L   SAN SG+  I   +  L   + K     +D
Sbjct: 309 PLHLLLFEYFKGNLVATSANLSGESIIK-DEFNLRQKLDKVFDFYLD 354


>gi|326924448|ref|XP_003208439.1| PREDICTED: hypothetical protein LOC100545276 [Meleagris gallopavo]
          Length = 100

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL 176
            RVP       +     PLAI SAN SG++  T+   ++S  +  ++  ++  G S   +
Sbjct: 2   IRVPDLTVLVHLIDMTGPLAITSANPSGEVDSTHHDMVIS-RLGHKLEGVLCDGESDEVV 60

Query: 177 ESTIVNVQ--CEKKVRILRPGGLEI 199
            ST+VN     E  + ILR G +  
Sbjct: 61  ASTVVNCTRIDESGITILREGCIPA 85


>gi|170765844|ref|ZP_02900655.1| carbamoyltransferase HypF [Escherichia albertii TW07627]
 gi|170124990|gb|EDS93921.1| carbamoyltransferase HypF [Escherichia albertii TW07627]
          Length = 766

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PEAAFQLLN--TPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L  
Sbjct: 353 ALED 356


>gi|109946715|ref|YP_663943.1| transcriptional regulatory protein HypF [Helicobacter acinonychis
           str. Sheeba]
 gi|109713936|emb|CAJ98944.1| transcriptional regulatory protein HypF [Helicobacter acinonychis
           str. Sheeba]
          Length = 750

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 22/170 (12%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           + D +AL +  + +  G  IA+      GL       D+RN  +I RL  +KKRP   P 
Sbjct: 189 LEDYDALLECAKDIQKGKIIALK-----GLGGFALVCDARNFQSIERLRLLKKRPL-KPF 242

Query: 61  ICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                D++  K++  ++ L    L     P    L+      T + P    N       +
Sbjct: 243 ALMFKDLNTAKQYVFLNELECESLRSANAP---ILLAHKKPDTKLAPNIAKNSPFYGVIL 299

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           P       L++    P+   SAN +     ++ K +           I D
Sbjct: 300 PYTPLHALLLDLLDFPIVFTSANFNSLPLASDEKEM------DRFHFIFD 343


>gi|58268134|ref|XP_571223.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134111867|ref|XP_775469.1| hypothetical protein CNBE1840 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258128|gb|EAL20822.1| hypothetical protein CNBE1840 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227457|gb|AAW43916.1| expressed protein [Cryptococcus neoformans var. neoformans JEC21]
          Length = 256

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 24/177 (13%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71
           R+A E L +G  I  PT+  Y L     +  A I+R++  K R   +  I  +      +
Sbjct: 20  REAYETLKSGGVIIAPTDVGYAL---MTSTQAGIQRIFAAKDRRQGHN-IGIIGTYRQHR 75

Query: 72  KHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRV 119
           +   +      L ++     G +  ++      ++HP   A                  +
Sbjct: 76  EIHVLPESKFELTRVLTEDMGMIVGIIAKFDPQNLHPRLAALDRATLSQVTKGDMVSIAI 135

Query: 120 PC-GFTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           P   F ++L         G  +   SAN +GQ     ++ I  + +   + L++D G
Sbjct: 136 PEGPFLRELGRLCDTDPQGLLMFGTSANLTGQGQRFRIEDIEPAVLAH-VDLVVDYG 191


>gi|270292624|ref|ZP_06198835.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|270278603|gb|EFA24449.1| conserved hypothetical protein [Streptococcus sp. M143]
          Length = 259

 Score = 56.6 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  DILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E   D + +P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSLVDKDGKLIPEQGGDRSISP-AP 228


>gi|257459578|ref|ZP_05624687.1| HypF finger [Campylobacter gracilis RM3268]
 gi|257443003|gb|EEV18137.1| HypF finger [Campylobacter gracilis RM3268]
          Length = 1482

 Score = 56.6 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+ +  E L  G   AI      G+       D+ N  A+R L  +KKRP+  P    
Sbjct: 400 EEAIARTAELLWRGQIGAIK-----GMGGFHIVCDATNERAVRMLRTLKKRPS-KPFAIM 453

Query: 64  VSDISMVKKHASVDPLSLHLAK 85
             D +   + AS+      L  
Sbjct: 454 CRDAAQAGRAASLSAEEKALID 475


>gi|125717816|ref|YP_001034949.1| hypothetical protein SSA_0983 [Streptococcus sanguinis SK36]
 gi|125497733|gb|ABN44399.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36]
          Length = 259

 Score = 56.6 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K R    P +     +  ++  A
Sbjct: 17  DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKSRNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAFGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|82778081|ref|YP_404430.1| transcriptional regulatory protein [Shigella dysenteriae Sd197]
 gi|309786206|ref|ZP_07680834.1| hydrogenase maturation protein HypF [Shigella dysenteriae 1617]
 gi|81242229|gb|ABB62939.1| transcriptional regulatory protein [Shigella dysenteriae Sd197]
 gi|308925951|gb|EFP71430.1| hydrogenase maturation protein HypF [Shigella dysenteriae 1617]
          Length = 750

 Score = 56.6 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 20/153 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           AL+     L  G  +AI      G+       D+RN  A+  L   K RPA  PL   + 
Sbjct: 202 ALQATIAQLKMGNIVAIK-----GIGGFHLACDARNSNAVATLRARKHRPA-KPLAVML- 254

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-T 124
                   A   P +     L  P    +++D     +I       L      +P     
Sbjct: 255 ------PVADGLPDAARQL-LTTPAAPIVLVDKKYVPEICDDIAPGLNEVGVMLPANPLQ 307

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
             L++    PL + S N SG+    + +  L  
Sbjct: 308 HLLLQELQCPLVMTSGNLSGKPPAISNEQALED 340


>gi|323351751|ref|ZP_08087405.1| translation factor (SUA5) [Streptococcus sanguinis VMC66]
 gi|322122237|gb|EFX93963.1| translation factor (SUA5) [Streptococcus sanguinis VMC66]
          Length = 259

 Score = 56.2 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K R    P +     +  ++  A
Sbjct: 17  DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|116198445|ref|XP_001225034.1| hypothetical protein CHGG_07378 [Chaetomium globosum CBS 148.51]
 gi|88178657|gb|EAQ86125.1| hypothetical protein CHGG_07378 [Chaetomium globosum CBS 148.51]
          Length = 242

 Score = 56.2 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 20/178 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S   ++  E L +G  + +PT+  Y L   +  P  + R++  K R   + L   +    
Sbjct: 16  SRDAQQTYETLKSGGVVVVPTDVGYAL--LTSTPAGVERIFTAKGRRQGHNL-GIIGTYQ 72

Query: 69  MVKKHASVDPLSLHLAKLFWPGP---LTLVLDLLSTTD-IHPLSTANL------KTACFR 118
             ++   +        ++        ++++     T   +  L  A L       T    
Sbjct: 73  QHREIHVLPESKFEFTRVLTEDMGMIISIIAKYDPTNPRLAALGPATLSQVTRGDTIGIA 132

Query: 119 VPC-GFTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           +P   F ++L         G  +   SAN +GQ     V+ I  + +     L++D G
Sbjct: 133 IPEGPFLRELGRLCDADPQGTLIFGSSANLTGQGQRFRVEDIEPAVLGH-ADLVVDYG 189


>gi|330908743|gb|EGH37257.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Escherichia
           coli AA86]
          Length = 766

 Score = 56.2 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P   
Sbjct: 240 YHLACDARNSNAVATLRARKHRPA-KPLAVML-------PVADDLPDAARQL-LTTPAAP 290

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNV 151
            +++D     ++       L      +P       L++    PL + S N SG+    + 
Sbjct: 291 IVLVDKKYIPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 350

Query: 152 KHILSS 157
           +  L+ 
Sbjct: 351 EQALAD 356


>gi|331648430|ref|ZP_08349518.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli M605]
 gi|331042177|gb|EGI14319.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli M605]
          Length = 774

 Score = 56.2 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA D+RN  A+  L   K RPA  PL   +     +         +  L     P   
Sbjct: 248 YHLACDARNSNAVATLRARKHRPA-KPLAVMLPVADDL------PDAARQLL--TTPAAP 298

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNV 151
            +++D     ++       L      +P       L++    PL + S N SG+    + 
Sbjct: 299 IVLVDKKYIPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 358

Query: 152 KHILSS 157
           +  L+ 
Sbjct: 359 EQALAD 364


>gi|326566271|gb|EGE16423.1| hypothetical protein E9K_01948 [Moraxella catarrhalis 103P14B1]
 gi|326574840|gb|EGE24770.1| hypothetical protein E9Y_03956 [Moraxella catarrhalis 101P30B1]
 gi|326576164|gb|EGE26079.1| hypothetical protein E9W_00895 [Moraxella catarrhalis CO72]
          Length = 188

 Score = 56.2 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 17/192 (8%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL-----YEI 51
           MQ   I   N     L +A   L     I  P  + Y LAV      ++ +      YE 
Sbjct: 1   MQKFYIHPDNPQKRVLIQAANLLKNDQLIIYPDPSGYRLAVSLDAKQSLAQALRFGQYEP 60

Query: 52  KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
           K              IS +   A +   +    K         +L+   +     ++++ 
Sbjct: 61  K-------FCLICRHISEISTFAKISDFAHRNLKNTLNKNTHFLLNPTKSAPKKFVNSSG 113

Query: 112 LKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
                          LIE    P        +G+    +  + L + +   +   +D G 
Sbjct: 114 KNICASLAHTPIVLSLIEALNAPFISMPIYLNGEKVTYDSTYELEAMMENLVDGFLDAGE 173

Query: 172 SKIGLESTIVNV 183
            +    S +V++
Sbjct: 174 LQD-QPSPVVSL 184


>gi|324990842|gb|EGC22777.1| hypothetical protein HMPREF9388_0874 [Streptococcus sanguinis
           SK353]
 gi|324993089|gb|EGC25009.1| hypothetical protein HMPREF9390_0798 [Streptococcus sanguinis
           SK405]
 gi|324995605|gb|EGC27517.1| hypothetical protein HMPREF9392_1103 [Streptococcus sanguinis
           SK678]
 gi|325687922|gb|EGD29942.1| hypothetical protein HMPREF9381_0821 [Streptococcus sanguinis SK72]
 gi|325689876|gb|EGD31880.1| hypothetical protein HMPREF9382_0834 [Streptococcus sanguinis
           SK115]
 gi|325694281|gb|EGD36195.1| hypothetical protein HMPREF9383_1483 [Streptococcus sanguinis
           SK150]
 gi|327459795|gb|EGF06135.1| hypothetical protein HMPREF9394_1490 [Streptococcus sanguinis
           SK1057]
 gi|327461355|gb|EGF07686.1| hypothetical protein HMPREF9378_0787 [Streptococcus sanguinis SK1]
 gi|327469525|gb|EGF14994.1| hypothetical protein HMPREF9386_0838 [Streptococcus sanguinis
           SK330]
 gi|327489217|gb|EGF21010.1| hypothetical protein HMPREF9395_1383 [Streptococcus sanguinis
           SK1058]
 gi|332360374|gb|EGJ38186.1| hypothetical protein HMPREF9380_1458 [Streptococcus sanguinis SK49]
 gi|332361438|gb|EGJ39242.1| hypothetical protein HMPREF9393_0864 [Streptococcus sanguinis
           SK1056]
 gi|332366544|gb|EGJ44290.1| hypothetical protein HMPREF9396_0897 [Streptococcus sanguinis
           SK1059]
          Length = 259

 Score = 56.2 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K R    P +     +  ++  A
Sbjct: 17  DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAFGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|239906992|ref|YP_002953733.1| hydrogenase maturation protein HypF [Desulfovibrio magneticus RS-1]
 gi|239796858|dbj|BAH75847.1| hydrogenase maturation protein HypF [Desulfovibrio magneticus RS-1]
          Length = 779

 Score = 56.2 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 12/131 (9%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           L  D+ +  A+  L   K RP+   L   V D+        V P +  L       P+ L
Sbjct: 229 LVCDAGDNDAVAELRRRKGRPS-KALAVMVPDLETAALLGEVGPTAAELLGGTA-RPICL 286

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET-------YGHPLAI--PSANRSGQ 145
            L   + + + P    ++      +P      ++            P A+   S N  G 
Sbjct: 287 -LPARAGSALAPSVAPDVAEIGVMLPYTPLHHILLADFAAAVGSDRPAALVMTSGNAGGD 345

Query: 146 ISITNVKHILS 156
                 +  L+
Sbjct: 346 PICLGNREALA 356


>gi|325696595|gb|EGD38484.1| translation factor (SUA5) [Streptococcus sanguinis SK160]
 gi|327473994|gb|EGF19407.1| translation factor (SUA5) [Streptococcus sanguinis SK408]
          Length = 259

 Score = 56.2 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K R    P +     +  ++  A
Sbjct: 17  DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEELKAFGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGDRIENAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|320194846|gb|EFW69475.1| NiFe hydrogenase metallocenter assembly protein HypF [Escherichia
           coli WV_060327]
          Length = 766

 Score = 56.2 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|323966857|gb|EGB62286.1| hydrogenase maturation protein HypF [Escherichia coli M863]
 gi|327251431|gb|EGE63117.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli
           STEC_7v]
          Length = 750

 Score = 55.8 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVTEDL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|312965264|ref|ZP_07779499.1| hydrogenase maturation protein HypF [Escherichia coli 2362-75]
 gi|312290100|gb|EFR17985.1| hydrogenase maturation protein HypF [Escherichia coli 2362-75]
          Length = 750

 Score = 55.8 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|304437846|ref|ZP_07397794.1| hydrogenase maturation protein HypF [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369146|gb|EFM22823.1| hydrogenase maturation protein HypF [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 781

 Score = 55.8 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 13/193 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + L  A   +  G  +A     V     Y LA D+R+ TA+ RL   K R A   L    
Sbjct: 216 DPLAAARRVVAEGGILA-----VKGIGGYHLACDARSETAVARLRRRKHREA-KALAVMA 269

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
             ++ V+    +      L        + L   + +                  +P    
Sbjct: 270 GSLAAVRALCLLSAEEERLLTSPAAPIVLLARRVDAVRPAAESVAPGNAYLGVMLPYAPV 329

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNV 183
             L+        + SAN SG   +          +      I+      +  ++ ++V +
Sbjct: 330 HLLLLGADDLWVMTSANLSGDPILYRDAAA-EEGLAGIADAILVHNREIVHRVDDSVVRI 388

Query: 184 QCEKKVRILRPGG 196
                  + R  G
Sbjct: 389 GAGGPQILRRSRG 401


>gi|258405427|ref|YP_003198169.1| (NiFe) hydrogenase maturation protein HypF [Desulfohalobium
           retbaense DSM 5692]
 gi|257797654|gb|ACV68591.1| (NiFe) hydrogenase maturation protein HypF [Desulfohalobium
           retbaense DSM 5692]
          Length = 781

 Score = 55.8 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 26/212 (12%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D   L +A  +L  G  +AI      GL        + + TA+ RL + K R    PL  
Sbjct: 206 DGPVLAEAARWLARGKILAIK-----GLGGFHLACLATSETAVARLRQRKHR-FGKPLAV 259

Query: 63  HVSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
            V D++   +   ++   +  L+ +  P    +V +  ++T +      +  +A   +P 
Sbjct: 260 MVPDLASAHRIVRINGAEATWLSGIVRP---IVVCEKKASTLLAGDIAPDTDSAGVMLPY 316

Query: 121 ---CGFTKKLIE-----TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                     +           L + S N S +      +             +      
Sbjct: 317 TPLHHVLLDELRGLLPQGSVPALVMTSGNLSSEPIALGNREARHRLHSIADGFVFHNRDI 376

Query: 173 KIGLESTIVNVQCE--KKVRILRPGGLEIETL 202
            I  + ++V +  +    V   R  G+    +
Sbjct: 377 LIRCDDSVVRIHPDTANPVWYRRARGMTPSPV 408


>gi|157150619|ref|YP_001450207.1| hypothetical protein SGO_0911 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|262282515|ref|ZP_06060283.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|322385497|ref|ZP_08059141.1| hypothetical protein HMPREF9422_0506 [Streptococcus cristatus ATCC
           51100]
 gi|13507083|gb|AAK28431.1|AF251027_3 unknown [Streptococcus gordonii]
 gi|13507093|gb|AAK28438.1| unknown [Streptococcus gordonii]
 gi|157075413|gb|ABV10096.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|262261806|gb|EEY80504.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|321270235|gb|EFX53151.1| hypothetical protein HMPREF9422_0506 [Streptococcus cristatus ATCC
           51100]
          Length = 259

 Score = 55.8 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K R    P +     +  ++  A
Sbjct: 17  DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|293365567|ref|ZP_06612276.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307703521|ref|ZP_07640463.1| hypothetical protein SMSK23_1350 [Streptococcus oralis ATCC 35037]
 gi|291315935|gb|EFE56379.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307622928|gb|EFO01923.1| hypothetical protein SMSK23_1350 [Streptococcus oralis ATCC 35037]
          Length = 259

 Score = 55.8 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           E L   G  I  PT+  Y +     +  A + R +E K+R    P +     +  ++  A
Sbjct: 17  EILKGEGGCIVCPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++       +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNSEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAYGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIEGAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
              +Q +K +      G+ +  + +   +  E     +++P +P
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDKDGKLIPEQGGARSTSP-AP 228


>gi|217031790|ref|ZP_03437294.1| hypothetical protein HPB128_155g103 [Helicobacter pylori B128]
 gi|216946637|gb|EEC25237.1| hypothetical protein HPB128_155g103 [Helicobacter pylori B128]
          Length = 757

 Score = 55.8 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + L  G  IA+      GL       D+RN   I RL  +K RP   P + 
Sbjct: 198 NDDALLECAKDLQKGKIIALK-----GLGGFVLLCDARNFQTIERLRLLKNRPL-KPFVL 251

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++ L    L     P    L++     T + P    N       +P 
Sbjct: 252 MFKDLNSAKQHAFLNALECESLNSASAP---ILLVRKKPNTPLAPNIAKNSPFYGVILPY 308

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN +     +N K I
Sbjct: 309 TPLHALLLDLLDFPIIFTSANFNSLPLASNEKEI 342


>gi|324111336|gb|EGC05318.1| hydrogenase maturation protein HypF [Escherichia fergusonii B253]
          Length = 750

 Score = 55.8 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D +   ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKIYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|298737068|ref|YP_003729598.1| hydrogenase maturation protein HypF [Helicobacter pylori B8]
 gi|298356262|emb|CBI67134.1| hydrogenase maturation protein HypF [Helicobacter pylori B8]
          Length = 769

 Score = 55.8 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + L  G  IA+      GL       D+RN   I RL  +K RP   P + 
Sbjct: 210 NDDALLECAKDLQKGKIIALK-----GLGGFVLLCDARNFQTIERLRLLKNRPL-KPFVL 263

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++ L    L     P    L++     T + P    N       +P 
Sbjct: 264 MFKDLNSAKQHAFLNALECESLNSASAP---ILLVRKKPNTPLAPNIAKNSPFYGVILPY 320

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN +     +N K I
Sbjct: 321 TPLHALLLDLLDFPIIFTSANFNSLPLASNEKEI 354


>gi|154149031|ref|YP_001406430.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter hominis
           ATCC BAA-381]
 gi|153805040|gb|ABS52047.1| [NiFe] hydrogenase maturation protein HypF [Campylobacter hominis
           ATCC BAA-381]
          Length = 1124

 Score = 55.8 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 11/81 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + ++KA E L AG  +A     V G+       D+ N  A++ L E K RP   P    
Sbjct: 198 EDGVKKATELLYAGKIVA-----VKGMGGFHIMADACNFEAVKTLRERKHRP-NKPFAVM 251

Query: 64  VSDISMVKKHASVDPLSLHLA 84
             D +M KK A + P    + 
Sbjct: 252 CKDENMAKKIAFISPFESKIL 272


>gi|119356556|ref|YP_911200.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353905|gb|ABL64776.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium
           phaeobacteroides DSM 266]
          Length = 773

 Score = 55.8 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LAVD+RN  A+R L E K R    P    +SD+ +V++   V+P     + L  P    +
Sbjct: 242 LAVDARNDAAVRLLRERKGR-EEKPFAVMMSDMELVRQFCDVEPEEA--SALLSPEAPIV 298

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH-PLAIPSANRSGQISITNVKH 153
           +L   S   +              +P      L+   G   L + SAN S +  +   + 
Sbjct: 299 LLVKRSMKGLSASIAPGNDRLGVMLPYSPLHSLLFDRGADVLLMTSANFSEEPILHENRE 358

Query: 154 ILSSSICKEIPLII 167
            +   +       +
Sbjct: 359 AM-ERLGGIADAFL 371


>gi|78043515|ref|YP_360372.1| hydrogenase maturation protein HypF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995630|gb|ABB14529.1| hydrogenase maturation protein HypF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 754

 Score = 55.8 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 15/154 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D   + K  E L  G  +A+      GL       D  N   +  L + K R A  P   
Sbjct: 201 DGEVIHKTQELLKKGFIVALK-----GLGGYHLAADPFNVKTVLLLRQRKHREA-KPFAL 254

Query: 63  HVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
            V ++++ KKH  +      L      P    ++     ++ I    + +       +P 
Sbjct: 255 MVKNLTVAKKHVYISKAEEKLLTSNVCP---IVLCRKKKSSKIVKEVSPDNDYLGIMLPY 311

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHIL 155
                L+  +   L + SAN S +  +     + 
Sbjct: 312 TPFHYLLLEHFEALIMTSANLSEEPIVYQDDEVF 345


>gi|301015832|pdb|3L7V|A Chain A, Crystal Structure Of A Hypothetical Protein Smu.1377c From
           Streptococcus Mutans Ua159
          Length = 295

 Score = 55.8 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 27/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           E +   G  I  PT+  Y +   + +   + R +E KKR    P +        ++  A 
Sbjct: 51  EIVKGEGGVIVCPTKVGYII--XTSDKKGLERKFEAKKRNRNKPGVVLCGSXEELRALAQ 108

Query: 76  VDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGFT 124
           + P      +  W   + L  +L   +               L T    T+CF +  G  
Sbjct: 109 LTPEIDAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREELXTDIRGTSCFVIKFGVA 168

Query: 125 KKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
            + I     E  G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 169 GEQIAKEXWEKEGRXVYASSANPSGKGNRGKVEG-IGERIESXVDLVIEADDY---VAS- 223

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 224 ---IQPDKTIETRYEQGVXVSXVDK 245


>gi|238799038|ref|ZP_04642498.1| Carbamoyltransferase hypF [Yersinia mollaretii ATCC 43969]
 gi|238717135|gb|EEQ08991.1| Carbamoyltransferase hypF [Yersinia mollaretii ATCC 43969]
          Length = 309

 Score = 55.8 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A + L AG  +AI      GL       D+ +  A+ RL + K+RP+  PL   +
Sbjct: 202 SAVEQAAQALLAGEIVAIK-----GLGGFHLAVDATHAAAVARLRDRKQRPS-KPLAVML 255

Query: 65  SDISMVKKHASV-DPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
            ++  + +     D  +L         P+ LV      + +       L     
Sbjct: 256 PNVDWLMRCVKSGDEGALLRLLRSSAAPIVLVAK-QPDSPLCAAVAPQLSEIGV 308


>gi|26249107|ref|NP_755147.1| hydrogenase maturation protein hypF [Escherichia coli CFT073]
 gi|26109514|gb|AAN81717.1|AE016765_119 Hydrogenase maturation protein hypF [Escherichia coli CFT073]
          Length = 774

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVMLPVADDL------PDAARQLL--TTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|326562116|gb|EGE12444.1| hypothetical protein E9G_00688 [Moraxella catarrhalis 7169]
 gi|326565703|gb|EGE15866.1| hypothetical protein E9O_03754 [Moraxella catarrhalis 12P80B1]
 gi|326567077|gb|EGE17199.1| hypothetical protein E9Q_06999 [Moraxella catarrhalis BC1]
          Length = 188

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 17/192 (8%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL-----YEI 51
           MQ   I   N     L +A   L     I  P  + Y LAV      ++ +      YE 
Sbjct: 1   MQKFYIHPDNPQKRVLIQAANLLKNDQLIIYPDPSGYRLAVSLDAKQSLAQALRFGQYEP 60

Query: 52  KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
           K              IS +   A +   +    K         +L+   +     +++++
Sbjct: 61  K-------FCLMCRHISEISTFAKISDFAHRNLKNTLNKNTHFLLNPTKSAPKKFVNSSD 113

Query: 112 LKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
                          LIE    P        +G+    +  + L + +   +   +D G 
Sbjct: 114 KNICASLAHTPIVLSLIEALNAPFISMPIYLNGEKVTYDSTYELEAMMENLVDGFLDAGE 173

Query: 172 SKIGLESTIVNV 183
            +    S +V++
Sbjct: 174 LQD-QPSPVVSL 184


>gi|315293667|gb|EFU53019.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           153-1]
          Length = 763

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 239 LACDARNSNAVATLRARKHRPA-KPLAVMLPVADDL------PDAARQLL--TTPAAPIV 289

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 290 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 349

Query: 154 ILSS 157
            L+ 
Sbjct: 350 ALAD 353


>gi|227888248|ref|ZP_04006053.1| hydrogenase maturation protein hypF [Escherichia coli 83972]
 gi|227834517|gb|EEJ44983.1| hydrogenase maturation protein hypF [Escherichia coli 83972]
 gi|307554686|gb|ADN47461.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli ABU
           83972]
          Length = 750

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADDLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|302532406|ref|ZP_07284748.1| [NiFe] hydrogenase maturation protein HypF [Streptomyces sp. C]
 gi|302441301|gb|EFL13117.1| [NiFe] hydrogenase maturation protein HypF [Streptomyces sp. C]
          Length = 797

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 66/203 (32%), Gaps = 25/203 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
           ++ + +A   L  G  +A     V     Y LA D+  P A+  L   K R    P    
Sbjct: 205 ADPVAEARRLLAEGAVLA-----VKGLGGYHLACDATRPAAVAELRRRKDRG-DKPFALM 258

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT----DIHPLSTANLKTACFRV 119
              ++ V+  A++ P    L      GP   ++ L         +              +
Sbjct: 259 ARSLADVEHLAALGPAERALL----TGPERPIVLLRRRPASAAALAADVAPGSPDLGVML 314

Query: 120 PCGFTKKLIETY-GHP-----LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
           P      L+    G P     L + S N SG+  +T+    L          +       
Sbjct: 315 PYTPVHHLLMGLPGDPPGPRLLVMTSGNLSGEPIVTDDAEALERLARLADAWLTHDRPIH 374

Query: 174 IGLESTIVNVQCEKKVRILRPGG 196
           +  + ++V V   + + + R  G
Sbjct: 375 VPCDDSVVRVCDGEPLTVRRSRG 397


>gi|229156869|ref|ZP_04284950.1| Hydrogenase maturation protein [Bacillus cereus ATCC 4342]
 gi|228626359|gb|EEK83105.1| Hydrogenase maturation protein [Bacillus cereus ATCC 4342]
          Length = 776

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 51/166 (30%), Gaps = 17/166 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P    
Sbjct: 207 DNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KPFALM 260

Query: 64  VSDISMVKKHASVD-PLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            S +  VK  A +     + L     P    ++L+      I      N  T    +   
Sbjct: 261 SSQLDDVKNFAKITKNEEVLLVSKERP---IVLLNKKDNQFISLDVAPNNNTYGVMLAYT 317

Query: 123 FTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               LI       L   SAN S +  +      +   +       +
Sbjct: 318 PLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|11498962|ref|NP_070195.1| hydrogenase expression/formation regulatory protein (hypF)
           [Archaeoglobus fulgidus DSM 4304]
 gi|2649204|gb|AAB89876.1| hydrogenase expression/formation regulatory protein (hypF)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 740

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 22/206 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
              +  A   LD+G  IAI      G+             + RL ++  RP   P    V
Sbjct: 189 EGGIGDAANALDSGKIIAIK-----GIGGYHIACLTEDDVVLRLRKLLNRPQ-QPFAVMV 242

Query: 65  SDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            D+S  ++ A +       A+L  P  P+ +V   L    + P     L T    +P   
Sbjct: 243 RDLSSAERVAELSNE--ERAELLSPARPIVVVRKKLPFEAVAP----ELDTIGIMLPYTP 296

Query: 124 TKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
              L+  E     L + SAN  G+    +   +    +   +   ++       ++ ++V
Sbjct: 297 LHHLLFQELKADYLVMTSANLPGEPMYIDESIMEKMELDGFLVHNLE---IANRVDDSVV 353

Query: 182 NVQCEKKVRILRPGGLEIETLKRAIS 207
                +++ I R  G   + +K  I 
Sbjct: 354 KYVGGRRLLIRRSRGFVPQPIKIDIG 379


>gi|332361873|gb|EGJ39676.1| hypothetical protein HMPREF9389_1534 [Streptococcus sanguinis
           SK355]
          Length = 259

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K R    P +     +  ++  A
Sbjct: 17  DILKGDGGCIVCPTKVGYII---MTSDRAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAFGDGREELMTDVRGTSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|323978680|gb|EGB73762.1| hydrogenase maturation protein HypF [Escherichia coli TW10509]
          Length = 750

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPTAEGL------PNAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D +   ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKIYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|317489374|ref|ZP_07947887.1| hydrogenase maturation protein HypF [Eggerthella sp. 1_3_56FAA]
 gi|316911545|gb|EFV33141.1| hydrogenase maturation protein HypF [Eggerthella sp. 1_3_56FAA]
          Length = 920

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 5   SITDSNAL-RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +  +S+A+  +A E L AG  +A     V GL       D+ NP A+  L   +KR    
Sbjct: 255 TCEESDAILARAVELLLAGKILA-----VKGLGGFHLVCDASNPEAVA-LLRARKRREGK 308

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
                ++D+  V+ +         +       P+ ++L         P     L      
Sbjct: 309 AFAVMMADMEAVRAYCEAGEAEEGILTA-TQRPI-VLLRKRPDAVFAPGLADALPELGVM 366

Query: 119 VPCGFTKKLI-----ETYGHPLAIPSANRSGQISITNVKH-ILSSSICKEIPLIIDGG 170
           +P    + L+     +  G           G  + T V   +++S    + P++ID  
Sbjct: 367 LPYTPLQHLLLHDFAKASGCAERSSQREAEGSRAATAVPMLVMTSGNIHDEPIVIDDE 424


>gi|312862808|ref|ZP_07723048.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|322516650|ref|ZP_08069563.1| translation factor (SUA5) [Streptococcus vestibularis ATCC 49124]
 gi|311101668|gb|EFQ59871.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|322124815|gb|EFX96242.1| translation factor (SUA5) [Streptococcus vestibularis ATCC 49124]
          Length = 261

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 76/213 (35%), Gaps = 29/213 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVS 65
           D N  ++  E L   G  I  PT+  Y +     +  A + R +E K+R    P +    
Sbjct: 8   DGNLNQEGFEILKGEGGCIVTPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCG 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTL--VLDLLSTT---------DIHPLSTANLKT 114
            +  ++  A + P      +  W   + L  +L                   L T    T
Sbjct: 65  SMDELRALAQLTPEIDAFYQKHWDEDILLGCILPWREDAYAKLQAFGDGREELMTDVRGT 124

Query: 115 ACFRVPCGFTKKLI-----ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +CF +  G   + I     E  G  +   SAN SG+ +   V+  +   I   + L+I+ 
Sbjct: 125 SCFVIKFGKAGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEA 183

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
                 + S    +Q +K V      G+ +  +
Sbjct: 184 DEY---VAS----IQPDKTVETRYEQGVMVSMV 209


>gi|218547780|ref|YP_002381571.1| carbamoyl phosphate phosphatase [Escherichia fergusonii ATCC 35469]
 gi|218355321|emb|CAQ87928.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia fergusonii ATCC 35469]
          Length = 750

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN +A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSSAVATLRARKHRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D +   ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKIYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|257789917|ref|YP_003180523.1| (NiFe) hydrogenase maturation protein HypF [Eggerthella lenta DSM
           2243]
 gi|325832630|ref|ZP_08165428.1| carbamoyltransferase HypF [Eggerthella sp. HGA1]
 gi|257473814|gb|ACV54134.1| (NiFe) hydrogenase maturation protein HypF [Eggerthella lenta DSM
           2243]
 gi|325485951|gb|EGC88411.1| carbamoyltransferase HypF [Eggerthella sp. HGA1]
          Length = 920

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 19/170 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           L +A E L AG  +A     V GL       D+ NP A+  L   +KR         ++D
Sbjct: 263 LARAVELLLAGKILA-----VKGLGGFHLVCDASNPEAVA-LLRARKRREGKAFAVMMAD 316

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +  V+ +         +       P+ ++L         P     L      +P    + 
Sbjct: 317 MEAVRAYCEAGEAEEGILTA-TQRPI-VLLRKRPDAVFAPGLADALPELGVMLPYTPLQH 374

Query: 127 LI-----ETYGHPLAIPSANRSGQISITNVKH-ILSSSICKEIPLIIDGG 170
           L+     +  G           G  + T V   +++S    + P++ID  
Sbjct: 375 LLLHDFAKASGCAERSSQREAEGSRAATAVPMLVMTSGNIHDEPIVIDDE 424


>gi|312877209|ref|ZP_07737178.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796018|gb|EFR12378.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 755

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 25/168 (14%)

Query: 14  KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           +A E LD        G  +AI      G+       D  N   ++RL+E K+R    PL 
Sbjct: 199 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNEIVVKRLFESKRR-EGKPLA 252

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120
               DI +VKK+  V+     + +  +  P   ++     T+      +NL T    R  
Sbjct: 253 LVARDIEVVKKYCHVN----KMEEDIFSSPRCPIILFEKKTEHFSHVNSNLHTLGIMRAY 308

Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 ++   G   L   SAN SG   I +    +   +      ++
Sbjct: 309 TPILDYILSKTGRDFLIATSANLSGIPMIIDESDAI-QKLDGTCDYVL 355


>gi|312793277|ref|YP_004026200.1| (nife) hydrogenase maturation protein hypf [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180417|gb|ADQ40587.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 755

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 25/168 (14%)

Query: 14  KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           +A E LD        G  +AI      G+       D  N   ++RL+E K+R    PL 
Sbjct: 199 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNEIVVKRLFESKRR-EGKPLA 252

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120
               DI +VKK+  V+     + +  +  P   ++     T+      +NL T    R  
Sbjct: 253 LVARDIEVVKKYCHVN----KMEEDIFSSPRCPIILFEKKTEHFSHVNSNLHTLGIMRAY 308

Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 ++   G   L   SAN SG   I +    +   +      ++
Sbjct: 309 TPILDYILSKTGRDFLIATSANLSGIPMIIDESDAI-QKLDGTCDYVL 355


>gi|260060790|ref|YP_003193870.1| transcriptional regulatory protein HypF [Robiginitalea biformata
           HTCC2501]
 gi|88784920|gb|EAR16089.1| transcriptional regulatory protein; HypF [Robiginitalea biformata
           HTCC2501]
          Length = 577

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 14/154 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+ K   F + G  IAI      G+       D+ NP AI+ L + K RP+  P  C   
Sbjct: 18  AIDKIIRFWEEGKIIAIK-----GIGGYLLTCDATNPKAIQTLRKRKHRPS-KPFACMYP 71

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-PLSTANLKTACF-RVPCGF 123
           +I+ +++   VD     +       P+ L+     + DI        L            
Sbjct: 72  NINKIEQDCYVDSTEQQMLTGE-VAPILLLQLRKKSVDIALSDIAPGLNQIGVMLPYTPL 130

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
              L++ +G P+   S N S    +   K I S 
Sbjct: 131 YLLLMQAFGKPIVATSGNLSNASIVFEDKKIFSE 164


>gi|317178083|dbj|BAJ55872.1| transcriptional regulator [Helicobacter pylori F16]
          Length = 750

 Score = 55.5 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L++     T + P    N       +P  
Sbjct: 245 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLVRKKPNTPLAPNIAKNSPFYGVILPYT 302

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335


>gi|301049534|ref|ZP_07196491.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           185-1]
 gi|300298687|gb|EFJ55072.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           185-1]
          Length = 628

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 243 LACDARNSNAVATLRARKHRPA-KPLAVMLPVADDL------PDAARQLL--TTPAAPIV 293

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 294 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 353

Query: 154 ILSS 157
            L+ 
Sbjct: 354 ALAD 357


>gi|296113771|ref|YP_003627709.1| hypothetical protein MCR_1559 [Moraxella catarrhalis RH4]
 gi|295921465|gb|ADG61816.1| hypothetical protein MCR_1559 [Moraxella catarrhalis RH4]
 gi|326564519|gb|EGE14745.1| hypothetical protein E9M_01553 [Moraxella catarrhalis 46P47B1]
 gi|326568341|gb|EGE18421.1| hypothetical protein E9S_08214 [Moraxella catarrhalis BC7]
 gi|326572242|gb|EGE22237.1| hypothetical protein E9U_00671 [Moraxella catarrhalis BC8]
 gi|326574584|gb|EGE24524.1| hypothetical protein EA1_07412 [Moraxella catarrhalis O35E]
          Length = 188

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 17/192 (8%)

Query: 1   MQIMSITDSN----ALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRL-----YEI 51
           MQ   I   N     L +A   L     I  P  + Y LAV      ++ +      YE 
Sbjct: 1   MQKFYIHPDNPQKRVLIQAANLLKNDQLIIYPDPSGYRLAVSLDAKQSLAQALRFGQYEP 60

Query: 52  KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
           K              IS +   A +   +    K         +L+   +     +++++
Sbjct: 61  K-------FCLICRHISEISTFAKISDFAHRNLKNTLNKNTHFLLNPTKSAPKKFVNSSD 113

Query: 112 LKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
                          LIE    P        +G+    +  + L + +   +   +D G 
Sbjct: 114 KNICASLAHTPIVLSLIEALNAPFISMPIYLNGEKVTYDSTYELEAMMENLVDGFLDAGE 173

Query: 172 SKIGLESTIVNV 183
            +    S +V++
Sbjct: 174 LQD-QPSPVVSL 184


>gi|228946891|ref|ZP_04109189.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122801|ref|ZP_04252010.1| Hydrogenase maturation protein [Bacillus cereus 95/8201]
 gi|228660665|gb|EEL16296.1| Hydrogenase maturation protein [Bacillus cereus 95/8201]
 gi|228812761|gb|EEM59084.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 581

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 18/176 (10%)

Query: 1   MQIMSITD---SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIK 52
           M+    T+    N + K  + L  G  +AI      GL       D  N  A++ L + K
Sbjct: 1   MKTTDGTNVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRK 55

Query: 53  KRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL 112
           KR    P     S +  VK  A +      L  +    P+ ++L+      I      + 
Sbjct: 56  KRDE-KPFALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVAPSN 112

Query: 113 KTACFRVPCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            T    +       LI       L   SAN S +  +      +   +       +
Sbjct: 113 NTYGVMLAYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 167


>gi|319940465|ref|ZP_08014810.1| hypothetical protein HMPREF9464_00029 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806091|gb|EFW02840.1| hypothetical protein HMPREF9464_00029 [Sutterella wadsworthensis
           3_1_45B]
          Length = 863

 Score = 55.1 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 76/246 (30%), Gaps = 66/246 (26%)

Query: 21  AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            G  +A     V G+       D+RNP A+ RL   K R    PL    ++   +++   
Sbjct: 240 RGEIVA-----VKGIGGFHLVCDARNPLAVERLRARKGRGE-KPLAVMAANTQSIREFVH 293

Query: 76  VDPLSLHLAKLFWPGPLTLVLDLLSTTDIH-------PLSTANLKTACFRVPCGFTKKLI 128
           V      +     P    ++L+ + + +         P     +      +P      L+
Sbjct: 294 VSAAEEKML--LSPAHPIVLLERIESDEDPTKPRLELPGIADGVSELGVMLPYTPLHALL 351

Query: 129 ETY--GHP--------------LAIPSANRSGQISITNVKHI------LSSSI---CKEI 163
                G P              L + SAN  G+  + +          ++       +EI
Sbjct: 352 FHALEGEPAEADWFEKRLCPSLLVMTSANPGGEPLVIDNDEAVLRLGQIADKFLMHNREI 411

Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSP 223
            +  D          ++V    +  + + R  G+  E ++              + P +P
Sbjct: 412 LIRCDD---------SVVRFVNDLPLWVRRGRGVTPEAVQI------------QAVPAAP 450

Query: 224 GMLKSH 229
           G    H
Sbjct: 451 GCRAPH 456


>gi|318041116|ref|ZP_07973072.1| (NiFe) hydrogenase maturation protein HypF [Synechococcus sp.
           CB0101]
          Length = 784

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 14/130 (10%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           L VD  +  A+++L + K RP   PL    +  + +++H   +     L    W GP   
Sbjct: 230 LLVDPTHAAAVQQLRQRKGRPE-KPLALLANS-AWMERHCHCNAGEREL----WLGPAAP 283

Query: 95  VLDLLSTTDIHPLSTANLKTA----CFRVPCGFTKK-LIETYGHPLAIPSANRSGQISIT 149
           ++ L    D  P   A +           PC   +  L+E  G  L   SANRSG+    
Sbjct: 284 IVLLRRNADQPPAFAAGVAGITPWLGVMRPCSGLQHLLLEACGGVLVATSANRSGEPLCA 343

Query: 150 N---VKHILS 156
           +      +L 
Sbjct: 344 DGVADADVLR 353


>gi|254778780|ref|YP_003056885.1| Hydrogenase maturation protein HypF [Helicobacter pylori B38]
 gi|254000691|emb|CAX28600.1| Hydrogenase maturation protein HypF [Helicobacter pylori B38]
          Length = 757

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 251

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++ L    L     P    L+      T + P    N       +P 
Sbjct: 252 MFKDLNAAKQHAFLNALECESLISTSAP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 308

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++   I
Sbjct: 309 TPLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 342


>gi|54298475|ref|YP_124844.1| hydrogenase maturation protein HypF [Legionella pneumophila str.
           Paris]
 gi|53752260|emb|CAH13692.1| Hydrogenase maturation protein HypF [Legionella pneumophila str.
           Paris]
          Length = 741

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 73/224 (32%), Gaps = 31/224 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           ++ K  + +  G  IA+      GL       D+RN  AI +L   K R A  P    V 
Sbjct: 189 SVDKVAQRIRDGEIIALK-----GLGGYQLICDARNEGAISQLRLRKSREA-KPFALMVV 242

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           +    +K A V P +  L       P  +VL       +       L      +P     
Sbjct: 243 NAKSAEKIAEVSPQA-RLVLESRERP--IVLLRKKKALLPDGIAPGLNHFGIMLPSTPLH 299

Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            L+     G+P             L + SAN   +  I + K      I     +I    
Sbjct: 300 YLLFNSFLGNPDYCQWLDEYHSMVLVVTSANIGSEPLIIDDKKAEQGLISIADKIISHDR 359

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
                 + ++V +  +  V I R  G     L+  +  E+   V
Sbjct: 360 EIITRTDDSVVRMINDTSVLIRRARGYVPAPLR--LPYEIPPTV 401


>gi|330998862|ref|ZP_08322589.1| carbamoyltransferase HypF [Parasutterella excrementihominis YIT
           11859]
 gi|329576076|gb|EGG57595.1| carbamoyltransferase HypF [Parasutterella excrementihominis YIT
           11859]
          Length = 768

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 30/180 (16%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + + +    +  G   A     V GL       D+ N  A+  L + K RP   P    
Sbjct: 202 EDEIAELLRQIQDGKIAA-----VKGLGGFHLVCDAGNAAAVSELRQRKHRP-FKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
             +     +   +   +    +L  P  P+ L         + P     L      +P  
Sbjct: 256 ALNDLSASRFVRISEKASK--ELHSPQAPIVLCPKTEDADRLLPGIAPELNRIGVMMPYT 313

Query: 123 FTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L+  E  G P             L + SAN  G+  +      +   +     L +
Sbjct: 314 PIHWLLFFEAMGRPEDPDWYKKECDLVLVMTSANAGGEPLVIGNDEAV-QKLDGIADLFL 372


>gi|303256889|ref|ZP_07342903.1| [NiFe] hydrogenase maturation protein HypF [Burkholderiales
           bacterium 1_1_47]
 gi|302860380|gb|EFL83457.1| [NiFe] hydrogenase maturation protein HypF [Burkholderiales
           bacterium 1_1_47]
          Length = 768

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 30/180 (16%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + + +    +  G   A     V GL       D+ N  A+  L + K RP   P    
Sbjct: 202 EDEIAELLRQIQDGKIAA-----VKGLGGFHLVCDAGNAAAVSELRQRKHRP-FKPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPG-PLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
             +     +   +   +    +L  P  P+ L         + P     L      +P  
Sbjct: 256 ALNDLSASRFVRISEKASK--ELHSPQAPIVLCPKTEDADRLLPGIAPELNRIGVMMPYT 313

Query: 123 FTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L+  E  G P             L + SAN  G+  +      +   +     L +
Sbjct: 314 PIHWLLFFEAMGRPEDPDWYKKECDLVLVMTSANAGGEPLVIGNDEAV-QKLDGIADLFL 372


>gi|296171548|ref|ZP_06852812.1| hydrogenase maturation protein HypF [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894110|gb|EFG73871.1| hydrogenase maturation protein HypF [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 787

 Score = 55.1 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 12/144 (8%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA    +  A+  L   K R A  P    V D+ + +++A VD     +     P   
Sbjct: 240 YHLACSVGDAGAVAALRARKARGA-KPFAMLVRDLKIARRYAHVDDTEAAVLLG--PARP 296

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG----HPL----AIPSANRSG 144
            ++L       +              +P      L+         P+     + SANRS 
Sbjct: 297 IVLLRRRPHAPVAHAVAPGSPLLGLMLPYSPIHHLLLAPVPGHAGPVPDALVLTSANRSD 356

Query: 145 QISITNVKHILSSSICKEIPLIID 168
           +         L   +      ++D
Sbjct: 357 EPICFTDDDAL-QRLPALCDAVLD 379


>gi|89255851|ref|YP_513213.1| transposase [Francisella tularensis subsp. holarctica LVS]
 gi|167010075|ref|ZP_02275006.1| transposase [Francisella tularensis subsp. holarctica FSC200]
 gi|89143682|emb|CAJ78881.1| Transposase [Francisella tularensis subsp. holarctica LVS]
          Length = 299

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET-YGHPLAIPSANRSGQISITNV 151
           T +  L +      L T +  T   RV   +  + I    G PL I S    G   +   
Sbjct: 192 TFIWLLRNYFCAQNLVTKSKNTVGIRVSEHYVPRAISAEIGEPLVISSFIVPGHQHVVTD 251

Query: 152 KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIE 200
              + S I   +  +++       L +T+V +  E   +ILR G  EI+
Sbjct: 252 CDEVDSQIMNYLDAVVESDYCGYDL-TTVVELL-ELPYQILRQGAGEID 298


>gi|55821208|ref|YP_139650.1| hypothetical protein stu1199 [Streptococcus thermophilus LMG 18311]
 gi|55823118|ref|YP_141559.1| hypothetical protein str1199 [Streptococcus thermophilus CNRZ1066]
 gi|116627934|ref|YP_820553.1| hypothetical protein STER_1166 [Streptococcus thermophilus LMD-9]
 gi|55737193|gb|AAV60835.1| conserved hypothetical protein [Streptococcus thermophilus LMG
           18311]
 gi|55739103|gb|AAV62744.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
 gi|116101211|gb|ABJ66357.1| Putative translation factor (SUA5) [Streptococcus thermophilus
           LMD-9]
 gi|312278520|gb|ADQ63177.1| Putative translation factor (SUA5) [Streptococcus thermophilus
           ND03]
          Length = 261

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 29/213 (13%)

Query: 8   DSNALRKACEFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVS 65
           D N  ++  E L   G  I  PT+  Y +     +  A + R +E K+R    P +    
Sbjct: 8   DGNLNQEGFEILKGEGGCIVTPTKVGYII---MTSDKAGLERKFEAKERNRNKPGVVLCG 64

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTL--VLDLLSTT---------DIHPLSTANLKT 114
            +  ++  A + P      +  W   + L  +L                   L T    T
Sbjct: 65  SMDELRALAQLTPEIDAFYQKHWDEDILLGCILPWREDAYAKLQAFGDGREELMTDARGT 124

Query: 115 ACFRVPCG-----FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
           +CF +  G       K++ E  G  +   SAN SG+ +   V+  +   I   + L+I+ 
Sbjct: 125 SCFVIKFGKPGEQIAKEMWEKEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEA 183

Query: 170 GISKIGLESTIVNVQCEKKVRILRPGGLEIETL 202
                 + S    +Q +K V      G+ +  +
Sbjct: 184 DEY---VAS----IQPDKTVETRYEQGVMVSMV 209


>gi|303245344|ref|ZP_07331628.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           fructosovorans JJ]
 gi|302493193|gb|EFL53055.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           fructosovorans JJ]
          Length = 779

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 50/160 (31%), Gaps = 22/160 (13%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A+++    L  G   A     V GL       D+ N   +R L   K RP+   L   V 
Sbjct: 205 AIKRLARALADGAIAA-----VKGLGGFHLLCDATNDATVRELRRRKHRPS-KALAIMVP 258

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP----C 121
            +   K   +V P +  L       P+TLV  +   + + P    +       +P     
Sbjct: 259 HLDAAKCIGAVGPRAEKLLTGTA-RPITLV-PVRPESGLSPAIAPDTAEIGIMLPYTPLH 316

Query: 122 GFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILS 156
                       P     L   S N  G+      +  LS
Sbjct: 317 HILLGDYAAAIGPERPAALVATSGNAGGEPISLGNREALS 356


>gi|269216438|ref|ZP_06160292.1| [NiFe] hydrogenase maturation protein HypF [Slackia exigua ATCC
           700122]
 gi|269129967|gb|EEZ61049.1| [NiFe] hydrogenase maturation protein HypF [Slackia exigua ATCC
           700122]
          Length = 820

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 67/199 (33%), Gaps = 29/199 (14%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           + +AC +L  G  +A     V GL       D+ NP  +  L   K+R            
Sbjct: 237 IERACSWLHDGRILA-----VKGLGGFHLVCDAANPETLAELRTRKRR-EGKAFAVMAPS 290

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +  V+   +V P    L     P    ++L              +L      +P    + 
Sbjct: 291 LDAVRACCAVSPEEERLL--VSPAHPIVLLKKKPGAVFAAGLADDLSELGVMLPYTPLQH 348

Query: 127 L-IETYGHPLAIPSANRSGQISITNVKHI------LSSSI---CKEIPLIIDGGISKIGL 176
           L +  +G  L + S N   +   T+ +        ++ +     + I    D  +++   
Sbjct: 349 LMLAEFGSMLVMTSGNVHDEPIQTDDEAAWKALAGIADAFVGNDRAIETRFDDSVAR--- 405

Query: 177 ESTIVNVQCEKKVRILRPG 195
              I+ V  +  V+++R  
Sbjct: 406 ---IIRVGGDAAVQLIRRA 421


>gi|254173266|ref|ZP_04879939.1| (NiFe) hydrogenase maturation protein HypF [Thermococcus sp. AM4]
 gi|214032675|gb|EEB73504.1| (NiFe) hydrogenase maturation protein HypF [Thermococcus sp. AM4]
          Length = 772

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 19/157 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKK--RPAMNPLIC 62
           + LRKA E +D G  +AI      G+       D+     +  L   K+  RP   P   
Sbjct: 201 DPLRKAAELIDRGYIVAIK-----GIGGIHLACDATREDVVAELR--KRTFRPQ-KPFAI 252

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
               +  VK  A V          +   P+ + L       +       L T    +P  
Sbjct: 253 MADSLETVKSFAYVSEEEEEELTSYR-RPI-VTLRKREPFPLPENLAPGLHTIGVMLPYA 310

Query: 123 FTKKLIETY--GHPLAIPSANRSGQISITNVKHILSS 157
            T  ++  +       + SAN  G   + + +     
Sbjct: 311 GTHYILFHWSKTKVYVMTSANYPGMPMVKDNERAFEE 347


>gi|332999449|gb|EGK19034.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri VA-6]
          Length = 750

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L E K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVMLPVAESL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|30064071|ref|NP_838242.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|56480168|ref|NP_708519.2| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|110806663|ref|YP_690183.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401]
 gi|30042327|gb|AAP18052.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|56383719|gb|AAN44226.2| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|110616211|gb|ABF04878.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401]
 gi|281602081|gb|ADA75065.1| putative hydrogenase maturation factor [Shigella flexneri 2002017]
 gi|313648192|gb|EFS12637.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri 2a
           str. 2457T]
 gi|332755712|gb|EGJ86075.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri
           2747-71]
 gi|332765663|gb|EGJ95876.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri
           2930-71]
 gi|333000625|gb|EGK20202.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri
           K-218]
 gi|333015872|gb|EGK35208.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri
           K-304]
          Length = 750

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L E K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVMLPVAESL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|328946050|gb|EGG40196.1| hypothetical protein HMPREF9397_0832 [Streptococcus sanguinis
           SK1087]
          Length = 259

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 28/205 (13%)

Query: 17  EFLD-AGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
           + L   G  I  PT+  Y +     +  A + R +E K R    P +     +  ++  A
Sbjct: 17  DILKGDGGCIVCPTKVGYII---MTSDKAGLERKFEAKARNRNKPGVVLCGSMDELRALA 73

Query: 75  SVDPLSLHLAKLFWPGPLTL--VLDLLS---------TTDIHPLSTANLKTACFRVPCGF 123
            ++P      +  W   + L  +L                   L T    T+CF +  G 
Sbjct: 74  QLNPEIEAFYQKHWDEDILLGCILPWKPEAFEKLKAFGDGREELMTDVRATSCFVIKFGK 133

Query: 124 TKKLIET----YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLEST 179
             + +       G  +   SAN SG+ +   V+  +   I   + L+I+       + S 
Sbjct: 134 AGEQLAAKLWEEGKMVYASSANPSGKGNRGKVEG-IGERIENAVDLVIEADDY---VAS- 188

Query: 180 IVNVQCEKKVRILRPGGLEIETLKR 204
              +Q +K +      G+ +  + +
Sbjct: 189 ---IQPDKTIETRYEQGVMVSMVDK 210


>gi|300976873|ref|ZP_07173658.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           45-1]
 gi|300409942|gb|EFJ93480.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           45-1]
          Length = 753

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 229 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADDLPDAARQL-LTTPAAPIV 279

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 280 LVDKKYVPELCDDIALGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 339

Query: 154 ILSS 157
            L+ 
Sbjct: 340 ALAD 343


>gi|332753429|gb|EGJ83809.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri
           4343-70]
          Length = 734

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L E K RPA  PL   +     +         +  L     P    +
Sbjct: 210 LACDARNSNAVATLRERKHRPA-KPLAVMLPVAESL------PDAARQLL--TTPAAPIV 260

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 261 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 320

Query: 154 ILSS 157
            L+ 
Sbjct: 321 ALAD 324


>gi|189009989|ref|ZP_02803700.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4076]
 gi|189402148|ref|ZP_02780463.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4401]
 gi|189403173|ref|ZP_02793809.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4486]
 gi|189404208|ref|ZP_02787897.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4501]
 gi|189405070|ref|ZP_02812973.2| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC869]
 gi|208807858|ref|ZP_03250195.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4206]
 gi|208818876|ref|ZP_03259196.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4042]
 gi|209397726|ref|YP_002272174.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4115]
 gi|217327432|ref|ZP_03443515.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. TW14588]
 gi|291284039|ref|YP_003500857.1| Carbamoyltransferase HypF [Escherichia coli O55:H7 str. CB9615]
 gi|189003574|gb|EDU72560.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4076]
 gi|189357267|gb|EDU75686.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4401]
 gi|189362053|gb|EDU80472.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4486]
 gi|189366856|gb|EDU85272.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4501]
 gi|189372219|gb|EDU90635.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC869]
 gi|208727659|gb|EDZ77260.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4206]
 gi|208738999|gb|EDZ86681.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4042]
 gi|209159126|gb|ACI36559.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4115]
 gi|217319799|gb|EEC28224.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. TW14588]
 gi|290763912|gb|ADD57873.1| Carbamoyltransferase HypF [Escherichia coli O55:H7 str. CB9615]
 gi|320189044|gb|EFW63703.1| NiFe hydrogenase metallocenter assembly protein HypF [Escherichia
           coli O157:H7 str. EC1212]
 gi|326339217|gb|EGD63032.1| NiFe hydrogenase metallocenter assembly protein HypF [Escherichia
           coli O157:H7 str. 1044]
 gi|326342900|gb|EGD66668.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. 1125]
          Length = 766

 Score = 54.7 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L  
Sbjct: 353 ALED 356


>gi|119472196|ref|XP_001258292.1| hypothetical protein NFIA_057440 [Neosartorya fischeri NRRL 181]
 gi|119406444|gb|EAW16395.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
          Length = 257

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 75/218 (34%), Gaps = 44/218 (20%)

Query: 7   TDSNALRKACEF---LDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLIC 62
           T  N  R A E    L  G  + +PT+  Y L     +  A I+R++  K R   +  I 
Sbjct: 11  TAPNVPRDAKETYNTLKRGGVVIVPTDVGYAL---LTSSQAGIQRIFSAKDRREGHN-IG 66

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS---TTDIHPLS----------T 109
            +      ++   +  +            + +++ L++   T ++HP             
Sbjct: 67  IIGTYKQHREIHLLSEVKFE-MTRVLTEDMAMIVGLIAKYDTKNLHPRLATLDSSTLSQV 125

Query: 110 ANLKTACFRVPC-GFTKKLIETYGH-P----LAIPSANRSGQISITNVKHILSSSICKEI 163
               T    VP   F ++L    G  P        SAN +GQ      +  +   +   +
Sbjct: 126 TKGDTISIAVPEGPFLRELGRLCGEDPDGMLTFGTSANLTGQGQRFRTED-IEPRLIGAV 184

Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            L++D G+               +K +  R GG+  + 
Sbjct: 185 DLVVDYGL---------------QKWQAYRRGGVNFDA 207


>gi|317179561|dbj|BAJ57349.1| transcriptional regulator [Helicobacter pylori F30]
          Length = 750

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 245 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 302

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335


>gi|217034517|ref|ZP_03439927.1| hypothetical protein HP9810_897g2 [Helicobacter pylori 98-10]
 gi|216942998|gb|EEC22479.1| hypothetical protein HP9810_897g2 [Helicobacter pylori 98-10]
          Length = 757

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 252 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 309

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 310 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 342


>gi|261838661|gb|ACX98427.1| transcriptional regulator of hydrogenase activity [Helicobacter
           pylori 51]
          Length = 769

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 210 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 263

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 264 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 321

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 322 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 354


>gi|332674144|gb|AEE70961.1| hydrogenase maturation protein HypF [Helicobacter pylori 83]
          Length = 750

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 245 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 302

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335


>gi|320640355|gb|EFX09894.1| hydrogenase maturation protein [Escherichia coli O157:H7 str.
           G5101]
          Length = 750

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYIPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|330956176|gb|EGH56436.1| SUA5/yciO/yrdC [Pseudomonas syringae Cit 7]
          Length = 76

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 73  HASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG 132
                 L L      WPGP T ++       +    T   +T   RV    T + +    
Sbjct: 9   FEDFPELWLDRMASTWPGPNTWLVPHQ--NLLPEWITGIHETVALRVTDHPTVRELCALV 66

Query: 133 HPLAIPSANR 142
            PL   SAN 
Sbjct: 67  GPLISTSANP 76


>gi|302391448|ref|YP_003827268.1| (NiFe) hydrogenase maturation protein HypF [Acetohalobium
           arabaticum DSM 5501]
 gi|302203525|gb|ADL12203.1| (NiFe) hydrogenase maturation protein HypF [Acetohalobium
           arabaticum DSM 5501]
          Length = 756

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 35/211 (16%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
              L ++   L  G  IA     V GL+      D  N  A+ RL   K RP   PL   
Sbjct: 201 EQPLEESGRLLRQGQIIA-----VKGLSGFHLICDGTNQQAVVRLRRNKSRP-NKPLAVM 254

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
           +  I  VK++  V  L   + +     P  ++L     + +      N  +    +P   
Sbjct: 255 MDRIETVKEYCQVSKLEADILQGIR-KP--ILLLEKKGSRLPFNIAPNNNSLGVMLPYTP 311

Query: 124 TKKLI--ETYGHPLAIPSANRS-------GQISITNVKHILSSSICK--EIPLIIDGGIS 172
              L+  +     L + SAN+S        Q ++ N++ I    +    EI L ID    
Sbjct: 312 LHCLLFSDQLQI-LVVTSANQSSLPLEYKNQSALENLREITDYFLLHNREIHLPIDD--- 367

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
                 ++V V   K+  + R  G   + ++
Sbjct: 368 ------SVVEVMAGKERIVRRSRGYTPQPIE 392


>gi|187779569|ref|ZP_02996042.1| hypothetical protein CLOSPO_03165 [Clostridium sporogenes ATCC
           15579]
 gi|187773194|gb|EDU36996.1| hypothetical protein CLOSPO_03165 [Clostridium sporogenes ATCC
           15579]
          Length = 808

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 49/151 (32%), Gaps = 14/151 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  A E +  G  +A     V G+       + +N  AI  L   KKRP   PL     D
Sbjct: 243 IYTAVELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKD 296

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           +  VK+   +  L   + K        L+L   ST  +        K     +P      
Sbjct: 297 LKTVKELCYISKLEEQILKGN--KKPILILKKKSTNILPDNIAPLNKYIGVMLPYSPLHY 354

Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156
           L+   G   +   S N SG          + 
Sbjct: 355 LLFKEGLDVIIATSGNISGIPMEYKNCEAIE 385


>gi|331684324|ref|ZP_08384916.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H299]
 gi|331077939|gb|EGI49145.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H299]
          Length = 750

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA D+RN  A+  L   K RPA  PL   +     +         +  L     P   
Sbjct: 224 YHLACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAP 274

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNV 151
            +++D     ++       L      +P       L++    PL + S N SG+    + 
Sbjct: 275 IVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 334

Query: 152 KHILSS 157
           +  L+ 
Sbjct: 335 EQALAD 340


>gi|15832822|ref|NP_311595.1| transcriptional regulatory protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749964|ref|ZP_02774986.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4113]
 gi|168774757|ref|ZP_02799764.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4196]
 gi|168800208|ref|ZP_02825215.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC508]
 gi|195938461|ref|ZP_03083843.1| transcriptional regulatory protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208813926|ref|ZP_03255255.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4045]
 gi|254794652|ref|YP_003079489.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli O157:H7 str. TW14359]
 gi|261226006|ref|ZP_05940287.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256736|ref|ZP_05949269.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli O157:H7 str. FRIK966]
 gi|13363039|dbj|BAB36991.1| transcriptional regulatory protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187769621|gb|EDU33465.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4196]
 gi|188015770|gb|EDU53892.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4113]
 gi|189377506|gb|EDU95922.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC508]
 gi|208735203|gb|EDZ83890.1| carbamoyltransferase HypF [Escherichia coli O157:H7 str. EC4045]
 gi|209761978|gb|ACI79301.1| transcriptional regulatory protein [Escherichia coli]
 gi|209761980|gb|ACI79302.1| transcriptional regulatory protein [Escherichia coli]
 gi|209761982|gb|ACI79303.1| transcriptional regulatory protein [Escherichia coli]
 gi|209761984|gb|ACI79304.1| transcriptional regulatory protein [Escherichia coli]
 gi|209761986|gb|ACI79305.1| transcriptional regulatory protein [Escherichia coli]
 gi|254594052|gb|ACT73413.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli O157:H7 str. TW14359]
 gi|320645902|gb|EFX14883.1| hydrogenase maturation protein [Escherichia coli O157:H- str.
           493-89]
 gi|320651202|gb|EFX19637.1| hydrogenase maturation protein [Escherichia coli O157:H- str. H
           2687]
 gi|320656752|gb|EFX24640.1| hydrogenase maturation protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662295|gb|EFX29692.1| hydrogenase maturation protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667346|gb|EFX34304.1| hydrogenase maturation protein [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 750

 Score = 54.3 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|15803229|ref|NP_289261.1| transcriptional regulatory protein [Escherichia coli O157:H7
           EDL933]
 gi|12517157|gb|AAG57819.1|AE005499_6 transcriptional regulatory protein [Escherichia coli O157:H7 str.
           EDL933]
          Length = 750

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|312196536|ref|YP_004016597.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EuI1c]
 gi|311227872|gb|ADP80727.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EuI1c]
          Length = 807

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 22/234 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLIC 62
           D++ + ++ E L AG  +A+      GL       D+R+  A  RL   K R A  P   
Sbjct: 215 DADPIERSAELLRAGAVLAMK-----GLGGYHLAVDARSDAAAARLRGRKHR-ADKPFAV 268

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            VSD++  ++  +V P++  L       P+ L+  L     +        +      P  
Sbjct: 269 MVSDVAAARELCAVGPVAERLLTGRR-RPIVLLDLLPGGPGVARSVAPGTRQLGLMTPYT 327

Query: 123 FTKKLIE-TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII-DGGISKIGLESTI 180
               L+   +  PL + S N S +  +          +       +       +  + ++
Sbjct: 328 PAHHLLLAAFSGPLVLTSGNVSDEPIVYRDDEAFG-RLGPIADYFLVHDRPIHVRADDSV 386

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETS--TPQSPGMLKSHYAP 232
           V V         R      E  +R  +        E      ++ G     YAP
Sbjct: 387 VRVLPSWPGEPRRERPPAGEPSRRPTNKPGSPAAGEREQLVRRARG-----YAP 435


>gi|254723243|ref|ZP_05185031.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           A1055]
          Length = 776

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I      +  T    +
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVAPSNNTYGVML 314

Query: 120 PCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 315 AYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|196032592|ref|ZP_03100006.1| hydrogenase maturation protein HypF [Bacillus cereus W]
 gi|228928323|ref|ZP_04091364.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934529|ref|ZP_04097364.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|195995343|gb|EDX59297.1| hydrogenase maturation protein HypF [Bacillus cereus W]
 gi|228825166|gb|EEM70963.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228831370|gb|EEM76966.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 776

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I      +  T    +
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVAPSNNTYGVML 314

Query: 120 PCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 315 AYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|119385818|ref|YP_916873.1| (NiFe) hydrogenase maturation protein HypF [Paracoccus
           denitrificans PD1222]
 gi|119376413|gb|ABL71177.1| (NiFe) hydrogenase maturation protein HypF [Paracoccus
           denitrificans PD1222]
          Length = 749

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 28/190 (14%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+ +  A+  L   K+RP+  P        +M+  HA+       L +     P   
Sbjct: 226 LACDAADARAVALLRARKRRPS-KPFALM-GTEAMICAHATPSEACWRLLRD----PAAP 279

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKH 153
           V+ + +   +       ++     +P       LI  +G  L + S N SG   +T    
Sbjct: 280 VVLVPARGTLPEDVAPGMRALGVMLPYTPLHHLLIAAFGGMLVMTSGNLSGAPQVTGNDE 339

Query: 154 ILSS---------SICKEIPLIIDGGISKIGLESTIVNVQC------------EKKVRIL 192
              +            +EI   +D G+ +      I   +             +   R+L
Sbjct: 340 ARKALARFADGFLMHNREIARRLDDGVERADPPMVIRRARGRVPGTLPLPPGFDGAPRVL 399

Query: 193 RPGGLEIETL 202
             GG     +
Sbjct: 400 AFGGQMKAAI 409


>gi|308182230|ref|YP_003926357.1| Hydrogenase maturation protein HypF [Helicobacter pylori PeCan4]
 gi|308064415|gb|ADO06307.1| Hydrogenase maturation protein HypF [Helicobacter pylori PeCan4]
          Length = 750

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +KKRP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKKRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++ L    L     P    L+      T + P    N       +P 
Sbjct: 245 MFKDLNAAKQHAFLNALECESLISTSAP---ILLARKKPNTQLAPNIAKNSPFYGVILPY 301

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++   I
Sbjct: 302 TPLHALLLDLLDFPIVFTSANFSSLPLASDEVEI 335


>gi|311235122|gb|ADP87976.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris
           RCH1]
          Length = 816

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+ +  A+  L E K+RP   PL   V D+  V++ A+  P    L  L    P+ +
Sbjct: 261 LACDATDDAAVTTLRERKRRP-HKPLAVMVPDMDTVRRIAAPTPDEERLI-LSQERPI-V 317

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVP----CGF---TKKLIETYGHPLA--IPSANRSGQ 145
           +        +    + +       +P          T   +   G   +   PSA+    
Sbjct: 318 LCRARDDGPLASAVSPDTDHVGVMLPYTPLHHVLFDTLADLRREGGTSSRRTPSASDVCA 377

Query: 146 ISITN 150
           + +T+
Sbjct: 378 LVMTS 382


>gi|165940636|gb|ABY75253.1| HypF [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 860

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
             T + A++   E L AG   A     V GL       D+ +  A+  L   K RP   P
Sbjct: 240 RPTGTPAIQALAEALAAGRIAA-----VKGLGGFHLACDAASDAAVGELRRRKHRP-HKP 293

Query: 60  LICHVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           L   V D++  ++   V P    L      P  L   LD L+   +H ++     +    
Sbjct: 294 LAIMVPDLAAARRIVHVSPEEEALLAGRERPIVLCRALDGLAG-GMHGVARPGDGSPLVL 352

Query: 119 VPCGF 123
            P   
Sbjct: 353 DPDAP 357


>gi|46581470|ref|YP_012278.1| [NiFe] hydrogenase maturation protein HypF [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46450892|gb|AAS97538.1| [NiFe] hydrogenase maturation protein HypF [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 839

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+ +  A+  L E K+RP   PL   V D+  V++ A+  P    L  L    P+ +
Sbjct: 284 LACDATDDAAVTTLRERKRRP-HKPLAVMVPDMDTVRRIAAPTPDEERLI-LSQERPI-V 340

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVP----CGF---TKKLIETYGHPLA--IPSANRSGQ 145
           +        +    + +       +P          T   +   G   +   PSA+    
Sbjct: 341 LCRARDDGPLASAVSPDTDHVGVMLPYTPLHHVLFDTLADLRREGGTSSRRTPSASDVCA 400

Query: 146 ISITN 150
           + +T+
Sbjct: 401 LVMTS 405


>gi|284922648|emb|CBG35736.1| hydrogenase maturation protein [Escherichia coli 042]
          Length = 750

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 20/144 (13%)

Query: 20  DAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHA 74
            AG  +AI      G+       D+RN  A+  L   K RPA  PL   +     +    
Sbjct: 211 KAGKIVAIK-----GIGGFHLACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL---- 260

Query: 75  SVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGH 133
                +  L     P    +++D     ++       L      +P       L++    
Sbjct: 261 --PDAARQLL--TTPAAPIVLVDKKYVPELCDNIAPGLNEVGVMLPANPLQHLLLQELQC 316

Query: 134 PLAIPSANRSGQISITNVKHILSS 157
           PL + S N SG+    + +  L+ 
Sbjct: 317 PLVMTSGNLSGKPPAISNEQALAD 340


>gi|256826574|ref|YP_003150533.1| (NiFe) hydrogenase maturation protein HypF [Cryptobacterium curtum
           DSM 15641]
 gi|256582717|gb|ACU93851.1| (NiFe) hydrogenase maturation protein HypF [Cryptobacterium curtum
           DSM 15641]
          Length = 848

 Score = 54.3 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 53/161 (32%), Gaps = 17/161 (10%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           +     +      L AG  +AI      GL       D+ N  AI  L   K+RP   PL
Sbjct: 231 VQSDAIIAACIAVLTAGGIVAIK-----GLGGFHLACDATNEQAIAELRRRKRRP-GKPL 284

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
            C V+ +   +           L     P    ++L   S        +  L      +P
Sbjct: 285 ACMVATLDKARALCQTTQEEEALLSS--PARPIVLLRKRSDVSFATGLSDGLSEMGLMLP 342

Query: 121 CGFTKKLI-ETYGHPLAIPSANRSGQISITNV---KHILSS 157
               + LI   +G  L + S N   +   T+     H+L+ 
Sbjct: 343 ATPLQHLILRAFGGMLVMTSGNVHDEPIQTDDARAAHVLAD 383


>gi|293415961|ref|ZP_06658601.1| hydrogenase maturation protein HypF [Escherichia coli B185]
 gi|291432150|gb|EFF05132.1| hydrogenase maturation protein HypF [Escherichia coli B185]
          Length = 750

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     +I       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPEICDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|218887443|ref|YP_002436764.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218758397|gb|ACL09296.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 852

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 13/125 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
             T + A++   E L AG   A     V GL       D+ +  A+  L   K RP   P
Sbjct: 232 RPTGTPAIQALAEALAAGRIAA-----VKGLGGFHLACDAASDAAVGELRRRKHRP-HKP 285

Query: 60  LICHVSDISMVKKHASVDPLSLHLAK-LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           L   V D++  ++   V P    L      P  L   LD L+   +H ++     +    
Sbjct: 286 LAIMVPDLAAARRIVHVSPEEEALLAGRERPIVLCRALDGLAG-GMHGVARPGDGSPLVL 344

Query: 119 VPCGF 123
            P   
Sbjct: 345 DPDAP 349


>gi|296109193|ref|YP_003616142.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus
           infernus ME]
 gi|295434007|gb|ADG13178.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus
           infernus ME]
          Length = 725

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 30/212 (14%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+++A + L+ G  +AI      G+        +     + RL EI  RP+  P    
Sbjct: 189 DEAIKEAIKLLEKGKILAIK-----GIGGYHLFCRADRDEPVLRLREILNRPS-QPFAVM 242

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            S I  VKK A +      L       P+ +VL       +    + NL T    +P   
Sbjct: 243 -SLIEEVKKFAILSKEEEILLTS-RERPI-VVLKKSKDYYLSEYVS-NLDTVGVMLPYTG 298

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICK------EIPLIIDGGISKIGLE 177
              L+          SAN  G     +   I+   +         I    D         
Sbjct: 299 LHYLLFNKVPAYVATSANLPGLPMAIDEGEIVKLKVDGYLMHNRRIINRCDD-------- 350

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAISVE 209
            ++V     + + + R  G   E ++  I  +
Sbjct: 351 -SVVKYIAGRAIFLRRSRGYVPEPIEVEIKND 381


>gi|331654189|ref|ZP_08355189.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli M718]
 gi|331047571|gb|EGI19648.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli M718]
          Length = 766

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     +I       L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPEICDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|167632690|ref|ZP_02391017.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0442]
 gi|170684887|ref|ZP_02876112.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0465]
 gi|254685837|ref|ZP_05149696.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254742525|ref|ZP_05200210.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           Kruger B]
 gi|167532988|gb|EDR95624.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0442]
 gi|170671147|gb|EDT21885.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0465]
          Length = 770

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 197 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 250

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I     ++  T    +
Sbjct: 251 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVASSNNTYGVML 308

Query: 120 PCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 309 AYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 356


>gi|30263224|ref|NP_845601.1| hydrogenase maturation protein HypF [Bacillus anthracis str. Ames]
 gi|47528598|ref|YP_019947.1| hydrogenase maturation protein HypF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186075|ref|YP_029327.1| hydrogenase maturation protein HypF [Bacillus anthracis str.
           Sterne]
 gi|165868612|ref|ZP_02213272.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0488]
 gi|167637108|ref|ZP_02395388.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0193]
 gi|170704939|ref|ZP_02895404.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0389]
 gi|177649985|ref|ZP_02932986.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0174]
 gi|190564762|ref|ZP_03017683.1| hydrogenase maturation protein HypF [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813906|ref|YP_002813915.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           CDC 684]
 gi|229603801|ref|YP_002867485.1| (NiFe) hydrogenase maturation protein HypF [Bacillus anthracis str.
           A0248]
 gi|254738308|ref|ZP_05196011.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254752624|ref|ZP_05204660.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           Vollum]
 gi|254761139|ref|ZP_05213163.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           Australia 94]
 gi|30257858|gb|AAP27087.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           Ames]
 gi|47503746|gb|AAT32422.1| hydrogenase maturation protein HypF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180002|gb|AAT55378.1| hydrogenase maturation protein HypF [Bacillus anthracis str.
           Sterne]
 gi|164715338|gb|EDR20855.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0488]
 gi|167514615|gb|EDR89981.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0193]
 gi|170129794|gb|EDS98656.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0389]
 gi|172083937|gb|EDT68996.1| hydrogenase maturation protein HypF [Bacillus anthracis str. A0174]
 gi|190564079|gb|EDV18043.1| hydrogenase maturation protein HypF [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006291|gb|ACP16034.1| [NiFe] hydrogenase maturation protein HypF [Bacillus anthracis str.
           CDC 684]
 gi|229268209|gb|ACQ49846.1| (NiFe) hydrogenase maturation protein HypF [Bacillus anthracis str.
           A0248]
          Length = 776

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I     ++  T    +
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEYISSDVASSNNTYGVML 314

Query: 120 PCGFTKKLIETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 315 AYTPLHHLILRGNFISLIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|237750734|ref|ZP_04581214.1| transcriptional regulatory protein HypF [Helicobacter bilis ATCC
           43879]
 gi|229373824|gb|EEO24215.1| transcriptional regulatory protein HypF [Helicobacter bilis ATCC
           43879]
          Length = 490

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 59/152 (38%), Gaps = 20/152 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D +A++   + L     +        GL       ++R+  A++++  IK R    P + 
Sbjct: 268 DLDAIKTLAKALMQNNIVLFK-----GLGGFAYIANARSKEALQKIRSIKNR-LHKPFVV 321

Query: 63  HVSDISMVKKHASVDPLSLHLA-KLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             ++I  ++  + + P    L      P    +++      ++    ++ L+T    +P 
Sbjct: 322 M-ANIPTLRTISLLTPQLESLLTSKEAP---IVIVPKHPQYNLSNEVSS-LQTIGVVIPY 376

Query: 122 GFTKKLIETYGHP---LAIPSANRSGQISITN 150
                L+ +Y  P   +   SAN  G++  T 
Sbjct: 377 TAMLTLLFSYLSPDFAMIYTSANNKGEMIATT 408


>gi|157162158|ref|YP_001459476.1| carbamoyltransferase HypF [Escherichia coli HS]
 gi|157067838|gb|ABV07093.1| carbamoyltransferase HypF [Escherichia coli HS]
          Length = 750

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|27652441|gb|AAO17546.1| BmTCTP receptor [Rattus norvegicus]
          Length = 160

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 26/123 (21%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS-----------MVKKHASVDPLSLHL 83
           LA  +    A+  +Y             H+ D                ++  V  +   L
Sbjct: 7   LACSASCSAALSCVYR-----------GHLGDAEKAAVSGLVHKVNAYRYCQVR-VPREL 54

Query: 84  AKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG-FTKKLIETYGHPLAIPSANR 142
            +  +PGP+TLV++   + +++            R+P   F   L + +G PLA+ SAN 
Sbjct: 55  LEDLFPGPVTLVMER--SEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTSANL 112

Query: 143 SGQ 145
           S Q
Sbjct: 113 SSQ 115


>gi|222529082|ref|YP_002572964.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455929|gb|ACM60191.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 755

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 25/168 (14%)

Query: 14  KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           +A E LD        G  +AI      G+       D  N T ++RL+E K+R    PL 
Sbjct: 199 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNETVVKRLFESKRR-EGKPLA 252

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120
                I +VKK+  V+     + +  +  P   ++     T+      +NL T    R  
Sbjct: 253 LVARGIEVVKKYCHVN----KMEEEIFSSPRCPIILFEKKTEHFSHVNSNLHTLGIMRAY 308

Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 ++   G   L   SAN SG   I +    +   +      ++
Sbjct: 309 TPILDYILSKTGRDFLIATSANLSGIPMIIDESDAI-QKLEGICDYVL 355


>gi|281179716|dbj|BAI56046.1| transcriptional regulator [Escherichia coli SE15]
          Length = 750

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|148379795|ref|YP_001254336.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932626|ref|YP_001384093.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936241|ref|YP_001387633.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A
           str. Hall]
 gi|148289279|emb|CAL83375.1| hydrogenase maturation protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928670|gb|ABS34170.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932155|gb|ABS37654.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum A
           str. Hall]
          Length = 812

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 14/151 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  A E +  G  +A     V G+       D +N  AI  L   KKRP   PL     D
Sbjct: 247 IYTAIELIKKGYIVA-----VKGIGGFHLVCDGKNKKAIENLRIRKKRP-HKPLAIMCKD 300

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           + +VK+   V  L   + +        L+L   +T  +    +   K     +P      
Sbjct: 301 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 358

Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156
           L+   G   +   S N SG+         + 
Sbjct: 359 LLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389


>gi|228986340|ref|ZP_04146477.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773367|gb|EEM21796.1| Hydrogenase maturation protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 776

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I      N       +
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEFISLDVAPNNNNYGVML 314

Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|229046924|ref|ZP_04192554.1| Hydrogenase maturation protein [Bacillus cereus AH676]
 gi|228724402|gb|EEL75729.1| Hydrogenase maturation protein [Bacillus cereus AH676]
          Length = 770

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I      N       +
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEFISLDVAPNNNNYGVML 314

Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|229110672|ref|ZP_04240236.1| Hydrogenase maturation protein [Bacillus cereus Rock1-15]
 gi|228672740|gb|EEL28020.1| Hydrogenase maturation protein [Bacillus cereus Rock1-15]
          Length = 452

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I      N       +
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEFISLDVAPNNNNYGVML 314

Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|30021351|ref|NP_832982.1| hydrogenase maturation protein hypF [Bacillus cereus ATCC 14579]
 gi|229128520|ref|ZP_04257498.1| Hydrogenase maturation protein [Bacillus cereus BDRD-Cer4]
 gi|29896905|gb|AAP10183.1| Hydrogenase maturation protein hypF [Bacillus cereus ATCC 14579]
 gi|228654713|gb|EEL10573.1| Hydrogenase maturation protein [Bacillus cereus BDRD-Cer4]
          Length = 709

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                S +  VK  A +      L  +    P+ ++L+      I      N       +
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL-VSKERPI-VLLNKKDNEFISLDVAPNNNNYGVML 314

Query: 120 PCGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                  LI       L   SAN S +  +      +   +       +
Sbjct: 315 AYTPLHHLILRGNFIALIATSANVSDEPIVYKDGDAI-EQLKGIADYYL 362


>gi|15611112|ref|NP_222763.1| putative transcriptional regulator [Helicobacter pylori J99]
 gi|4154540|gb|AAD05618.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
          Length = 757

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFKTIERLRLLKNRPL-KPFAL 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 252 MFKDLNAAKQHAFLNALECESLNSVS-API-LLARKKPDTQLAPNIAKNSPFYGVILPYT 309

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++ K I
Sbjct: 310 PLHALLLDLLDSPIVFTSANFSSLPLASDEKEI 342


>gi|301027103|ref|ZP_07190474.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           69-1]
 gi|300395203|gb|EFJ78741.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           69-1]
          Length = 770

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|300906789|ref|ZP_07124471.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           84-1]
 gi|301305402|ref|ZP_07211496.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           124-1]
 gi|300401483|gb|EFJ85021.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           84-1]
 gi|300839322|gb|EFK67082.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           124-1]
 gi|315254489|gb|EFU34457.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           85-1]
          Length = 750

 Score = 53.9 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|307636734|gb|ADN79184.1| NiFe-hydrogenase metallocenter assembly protein [Helicobacter
           pylori 908]
 gi|325995320|gb|ADZ50725.1| NiFe hydrogenase metallocenter assembly protein [Helicobacter
           pylori 2018]
 gi|325996918|gb|ADZ49126.1| hydrogenase maturation protein [Helicobacter pylori 2017]
          Length = 750

 Score = 53.9 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFKTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 245 MFKDLNAAKQHAFLNALECESLNSVS-API-LLARKKPDTQLAPNIAKNSPFYGVILPYT 302

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++ K I
Sbjct: 303 PLHALLLDLLDSPIVFTSANFSSLPLASDEKEI 335


>gi|331674218|ref|ZP_08374978.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA280]
 gi|331068312|gb|EGI39707.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA280]
          Length = 770

 Score = 53.9 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|218701202|ref|YP_002408831.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli IAI39]
 gi|218371188|emb|CAR19019.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli IAI39]
          Length = 770

 Score = 53.9 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|153939047|ref|YP_001391091.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum F
           str. Langeland]
 gi|152934943|gb|ABS40441.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum F
           str. Langeland]
          Length = 812

 Score = 53.9 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 14/151 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  A E +  G  +A     V G+       + +N  AI  L   KKRP   PL     D
Sbjct: 247 IYTAVELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKD 300

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           + +VK+   V  L   + +        L+L   +T  +    +   K     +P      
Sbjct: 301 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 358

Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156
           L+   G   +   S N SG+         + 
Sbjct: 359 LLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389


>gi|293412067|ref|ZP_06654790.1| hydrogenase maturation protein HypF [Escherichia coli B354]
 gi|291468838|gb|EFF11329.1| hydrogenase maturation protein HypF [Escherichia coli B354]
          Length = 770

 Score = 53.9 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|2982748|gb|AAC06379.1| similar to transcriptional regulatory protein HypF in Rhizobium
           leguminosarum bv. viciae, Swiss-Prot Accession Number
           P28156 [Methanosarcina mazei Go1]
          Length = 555

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 19/216 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETV--YG---LAVDSRNPTAIRRL-YEIKKRPAMNPLICH 63
            A+  A + L  G  +A     V  +G   +A ++R    +  L   +K RP   P    
Sbjct: 203 EAIASASDLLQEGSILA-----VKGFGGFHIACNARQEEPVNELRRRLK-RPE-QPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             +  + +  A ++             P+T VL      ++    +  L      +P   
Sbjct: 256 AKNAGVAESFADLEGAGREYLTSHR-RPIT-VLPRSEEFNLADSVSPGLHNIGVMLPYTG 313

Query: 124 TKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTI 180
           T+ L+          + SAN  G+  + + +  L   +   +    +   +     + T+
Sbjct: 314 TQNLLFDRVPDAVYVMTSANLPGRPMVVDNREAL-EKLKGIVDFYLLHNRVIANRNDDTV 372

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
           + +   +   I R  G   E ++    +E    V  
Sbjct: 373 IRIVNGQAAFIRRSRGYVPEPVELPFEIEASIGVGA 408


>gi|323139229|ref|ZP_08074284.1| (NiFe) hydrogenase maturation protein HypF [Methylocystis sp. ATCC
           49242]
 gi|322395527|gb|EFX98073.1| (NiFe) hydrogenase maturation protein HypF [Methylocystis sp. ATCC
           49242]
          Length = 761

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 75/234 (32%), Gaps = 40/234 (17%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            +    L AG  +A     V G+       D+RN +A+  L   K R A  P    V+++
Sbjct: 199 EEIAAALLAGKIVA-----VKGIGGFHLMCDARNESAVNELRRRKARDA-KPFAIMVANV 252

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
           + V K A      + L +     P+ L   +    D+ P     L      +       L
Sbjct: 253 ASVGKVADATDAEMTLLQTAA-RPIVL---MNRRDDVAPGVAPRLGRIGVMLAYTPLHHL 308

Query: 128 I--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
           I     G P             L   SAN  G   + +      + +     +I+     
Sbjct: 309 IFHAAAGAPTGKEWRVAPHDLALVATSANVGGDPIVKDNDEA-QARLASIADIIVTHDRE 367

Query: 173 KIGL--ES--TIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQS 222
            +    +S  T+V+        + R  G   E +   +  +    V   +  ++
Sbjct: 368 IVTRVDDSVMTVVD---GAPAFLRRARGFVPEPID--LGADGPCVVGAGAHLKA 416


>gi|333001051|gb|EGK20621.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri
           K-272]
 gi|333015446|gb|EGK34785.1| [NiFe] hydrogenase maturation protein HypF [Shigella flexneri
           K-227]
          Length = 750

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L E K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVMLPVAESL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIALGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|293406203|ref|ZP_06650129.1| carbamoyltransferase hypF [Escherichia coli FVEC1412]
 gi|298381940|ref|ZP_06991537.1| carbamoyltransferase hypF [Escherichia coli FVEC1302]
 gi|291426209|gb|EFE99241.1| carbamoyltransferase hypF [Escherichia coli FVEC1412]
 gi|298277080|gb|EFI18596.1| carbamoyltransferase hypF [Escherichia coli FVEC1302]
          Length = 746

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+ N  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDACNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|170680945|ref|YP_001744859.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli
           SMS-3-5]
 gi|170518663|gb|ACB16841.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli
           SMS-3-5]
          Length = 762

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LSTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYIPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|218706206|ref|YP_002413725.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli UMN026]
 gi|300899949|ref|ZP_07118153.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           198-1]
 gi|218433303|emb|CAR14203.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli UMN026]
 gi|300356506|gb|EFJ72376.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           198-1]
          Length = 770

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+ N  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 250 LACDACNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|261840058|gb|ACX99823.1| transcriptional regulator (hypF) [Helicobacter pylori 52]
          Length = 750

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++ L    L     P    L+      T + P    N       +P 
Sbjct: 245 MFKDLNTAKQHAFLNALECESLNSASAP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 301

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++   I
Sbjct: 302 TPLHALLLDLLDFPIIFTSANFSSLPLASDEDEI 335


>gi|119868218|ref|YP_938170.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. KMS]
 gi|119694307|gb|ABL91380.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. KMS]
          Length = 752

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 25/149 (16%)

Query: 21  AGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            G  +A     V     Y LA D+ N TA+  L   K+R    P    V D +   + A 
Sbjct: 207 DGGVVA-----VKGIGGYHLACDAENNTAVAELRRRKQRG-DKPFAVMVPDAAAAGRIAV 260

Query: 76  VDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
           +D ++ HL     P  P+ L      TT    ++  N       +       L+  +G P
Sbjct: 261 LDEVAQHLLGG--PQRPIVLAPRRTPTTVAAAVAPGNPD-LGVLLAYSPLHTLL--FGLP 315

Query: 135 --------LAIPSANRSGQISITNVKHIL 155
                   L + S N +G+    +    +
Sbjct: 316 GDEPGPQVLVMTSGNLAGEPLCYDDDDAV 344


>gi|108799103|ref|YP_639300.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. MCS]
 gi|108769522|gb|ABG08244.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. MCS]
          Length = 745

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 25/149 (16%)

Query: 21  AGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            G  +A     V     Y LA D+ N TA+  L   K+R    P    V D +   + A 
Sbjct: 200 DGGVVA-----VKGIGGYHLACDAENNTAVAELRRRKQRG-DKPFAVMVPDAAAAGRIAV 253

Query: 76  VDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
           +D ++ HL     P  P+ L      TT    ++  N       +       L+  +G P
Sbjct: 254 LDEVAQHLLGG--PQRPIVLAPRRTPTTVAAAVAPGNPD-LGVLLAYSPLHTLL--FGLP 308

Query: 135 --------LAIPSANRSGQISITNVKHIL 155
                   L + S N +G+    +    +
Sbjct: 309 GDEPGPQVLVMTSGNLAGEPLCYDDDDAV 337


>gi|331658817|ref|ZP_08359759.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA206]
 gi|315298802|gb|EFU58056.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           16-3]
 gi|331053399|gb|EGI25428.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA206]
          Length = 750

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVAILRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|170760420|ref|YP_001787158.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407409|gb|ACA55820.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 812

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 14/155 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + N +  A E +  G  +A     V G+       + ++  AI  L   KKRP   PL  
Sbjct: 243 EKNPIYTAAELIKKGYIVA-----VKGIGGFHLVCNGKDKKAIESLRIRKKRP-HKPLAI 296

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
              D+ +VK+   V  L   + +        L+L   +T  +    +   K     +P  
Sbjct: 297 MCKDLKIVKELCYVSKLEEQILEGN--KKPILILKKKATNILSDNISPFNKYLGVMLPYS 354

Query: 123 FTKKLIETYGH-PLAIPSANRSGQISITNVKHILS 156
               L+   G   +   S N SG+         + 
Sbjct: 355 PLHYLLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389


>gi|300941085|ref|ZP_07155598.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           21-1]
 gi|300454180|gb|EFK17673.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           21-1]
          Length = 645

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|191166784|ref|ZP_03028610.1| carbamoyltransferase HypF [Escherichia coli B7A]
 gi|193069651|ref|ZP_03050603.1| carbamoyltransferase HypF [Escherichia coli E110019]
 gi|190903155|gb|EDV62878.1| carbamoyltransferase HypF [Escherichia coli B7A]
 gi|192957014|gb|EDV87465.1| carbamoyltransferase HypF [Escherichia coli E110019]
          Length = 766

 Score = 53.5 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L  
Sbjct: 353 ALED 356


>gi|218696303|ref|YP_002403970.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli 55989]
 gi|309795171|ref|ZP_07689590.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           145-7]
 gi|218353035|emb|CAU98860.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli 55989]
 gi|308121142|gb|EFO58404.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           145-7]
          Length = 750

 Score = 53.5 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|284929154|ref|YP_003421676.1| (NiFe) hydrogenase maturation protein HypF [cyanobacterium UCYN-A]
 gi|284809613|gb|ADB95318.1| (NiFe) hydrogenase maturation protein HypF [cyanobacterium UCYN-A]
          Length = 761

 Score = 53.5 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 14/163 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
            ALR+    L AG  +A     V GL       ++RN  +I +L + K RP   P     
Sbjct: 203 EALRQCINDLKAGKIVA-----VKGLGGFQIIVNARNTNSIHKLRKYKNRP-KKPFALMY 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
           S +  V+    +  L   L  +    P+ ++L   +      ++  N             
Sbjct: 257 SSLKAVRTDCQISLLEKELL-ISSQAPI-VLLKKKNNNQNCNIAPNNPYLGVMLASTSLH 314

Query: 125 KKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             L++    PL I S N + +    N K  +   +   + L +
Sbjct: 315 YLLLKELNFPLIITSGNINSEPICINEKEAV-QQLGNIVDLFL 356


>gi|182678133|ref|YP_001832279.1| (NiFe) hydrogenase maturation protein HypF [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634016|gb|ACB94790.1| (NiFe) hydrogenase maturation protein HypF [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 779

 Score = 53.5 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 18/200 (9%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVS 65
           A   A   L  G  +A+      G+       D+    +++ L   K RP   PL   + 
Sbjct: 203 AFEVALALLRCGGILALK-----GIGGYHLACDATREDSVQLLRARKHRP-TKPLAVMMR 256

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT----DIHPLSTANLKTACFRVP- 120
           D++   ++ ++            P    ++++    +     + P  +  L      +P 
Sbjct: 257 DLATAARYCALTQEERQALVD--PSAPIVLVNRQDDSSLAPSLAPSLSPGLDRLGVLLPY 314

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
                 L++    PL + S NRSG   +      L          ++        L+ ++
Sbjct: 315 TPLHHLLLDALAFPLVMSSGNRSGAPQVFEDDVALRDLAEIADGWLMHDRPIARRLDDSV 374

Query: 181 VNVQCEKKVRILRPGGLEIE 200
           V V    K  + R  GL  E
Sbjct: 375 VMVSAGAKRVLRRGRGLAPE 394


>gi|21226879|ref|NP_632801.1| hydrogenase maturation protein [Methanosarcina mazei Go1]
 gi|20905184|gb|AAM30473.1| Hydrogenase maturation protein [Methanosarcina mazei Go1]
          Length = 772

 Score = 53.5 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 19/216 (8%)

Query: 10  NALRKACEFLDAGLPIAIPTETV--YG---LAVDSRNPTAIRRL-YEIKKRPAMNPLICH 63
            A+  A + L  G  +A     V  +G   +A ++R    +  L   +K RP   P    
Sbjct: 203 EAIASASDLLQEGSILA-----VKGFGGFHIACNARQEEPVNELRRRLK-RPE-QPFAVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             +  + +  A ++             P+T VL      ++    +  L      +P   
Sbjct: 256 AKNAGVAESFADLEGAGREYLTSHR-RPIT-VLPRSEEFNLADSVSPGLHNIGVMLPYTG 313

Query: 124 TKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISKIGLESTI 180
           T+ L+          + SAN  G+  + + +  L   +   +    +   +     + T+
Sbjct: 314 TQNLLFDRVPDAVYVMTSANLPGRPMVVDNREAL-EKLKGIVDFYLLHNRVIANRNDDTV 372

Query: 181 VNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
           + +   +   I R  G   E ++    +E    V  
Sbjct: 373 IRIVNGQAAFIRRSRGYVPEPVELPFEIEASIGVGA 408


>gi|317182589|dbj|BAJ60373.1| transcriptional regulator [Helicobacter pylori F57]
          Length = 750

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 245 MFKDLNTAKQHAFLNALECESLNSTSV-PI-LLARKKPNTPLAPNIAKNSPFYGVILPYT 302

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335


>gi|315587233|gb|ADU41614.1| hydrogenase maturation protein HypF [Helicobacter pylori 35A]
          Length = 750

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA +  L           P+ L       T + P    N       +P  
Sbjct: 245 MFKDLNTAKQHAFLSALECESLNS-TSAPILLACK-KPNTPLAPNIAKNSPFYGVILPYT 302

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 303 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 335


>gi|320202357|gb|EFW76927.1| carbamoyltransferase HypF [Escherichia coli EC4100B]
          Length = 734

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 210 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 260

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 261 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 320

Query: 154 ILSS 157
            L  
Sbjct: 321 ALED 324


>gi|220905586|ref|YP_002480898.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869885|gb|ACL50220.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 978

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 13/109 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+R+A   L  G  +A       GL       D+RN  A+  L E K RP   PL    
Sbjct: 324 EAIRRAGRVLLDGGILAFK-----GLGGFQLACDARNERALALLRERKNRP-HKPLALMA 377

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLK 113
             +  V+    + P    L     P    ++  L +     P +T  + 
Sbjct: 378 DCLETVRAFCDLSPEHEALLTS--PEKPIVLCPLRTGKARGPYATNGVD 424


>gi|315231118|ref|YP_004071554.1| Ni-Fe hydrogenase metallocenter assembly HypF-like protein
           [Thermococcus barophilus MP]
 gi|315184146|gb|ADT84331.1| Ni-Fe hydrogenase metallocenter assembly HypF-like protein
           [Thermococcus barophilus MP]
          Length = 770

 Score = 53.1 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 26/217 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKK--RPAMNPLIC 62
           + ++K  E +D G  +AI      G+       D+ N   +  L   K+  RP   P   
Sbjct: 201 DPIKKTAELIDKGYIVAIK-----GIGGIHIACDATNEDVVEELR--KRILRPQ-QPFAL 252

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
              D+  ++  A V          +   P+ + L       +       L T    +P  
Sbjct: 253 MAKDLETIESFAIVSDAEKEELLSYR-KPI-VALRKKEPFPLPEALAPGLHTIGVMLPYS 310

Query: 123 FTKKLIETYGH-PL-AIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               L+  Y   P+  + SAN  G   + +               ++         + ++
Sbjct: 311 GIHYLLFHYSKSPVYVMTSANYPGLPMVKDNDKAFKELKDLADYFLLHNRKILNRADDSV 370

Query: 181 VNVQCEKKVRILRPGG-------LEIETLKRAISVEL 210
           +     K+  I R  G       +  E +  A+  EL
Sbjct: 371 IRFVDGKRAVIRRSRGFVPLPIDIPFEFIGLAVGAEL 407


>gi|88811666|ref|ZP_01126920.1| hydrogenase maturation protein [Nitrococcus mobilis Nb-231]
 gi|88791057|gb|EAR22170.1| hydrogenase maturation protein [Nitrococcus mobilis Nb-231]
          Length = 781

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 15/165 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            + +  A   L  G  +A     V GL        + N  A+ RL + K R    P    
Sbjct: 199 DDTIAAARRLLTQGQIVA-----VKGLGGFHLAVAADNAAAVARLRQRKGR-YHKPFALM 252

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CG 122
             +I +++++ +V      L +   P    ++L+      +        +T  F +P   
Sbjct: 253 ARNIGVIRRYCAVSAAEQALLES--PAAPIVLLEASGPESVSAAVAPGQRTLGFMLPYTP 310

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L++    P+ + S NRS     T       + +      ++
Sbjct: 311 LHHLLLQGLNQPIVLTSGNRSDAPQCT-DNDAARTRLAGLADYLL 354


>gi|326385676|ref|ZP_08207306.1| (NiFe) hydrogenase maturation protein HypF [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209834|gb|EGD60621.1| (NiFe) hydrogenase maturation protein HypF [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 763

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 58/187 (31%), Gaps = 15/187 (8%)

Query: 16  CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
              L  G+ +AI      GL       D+RN  A+  L   K R A  P     +  +  
Sbjct: 212 ARLLREGVVVAIK-----GLGGFHLACDARNAAALATLRRRKHRDA-KPFAVM-ATEAQA 264

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC-GFTKKLIE 129
           +    VD  +L L        + L         +              +P       L++
Sbjct: 265 RALCVVDEAALALLASPAAPIVLLPCRADGGEALPDGLAPGQDHLGLMLPATPLHHLLLD 324

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKK 188
            +G PL + S NRS +    +        +       +    + +  L+ ++V +     
Sbjct: 325 AFGGPLVMTSGNRSEEPQAIDNDEA-RLRLAGIADAFLMHDRAIVNRLDDSVVALDEGGA 383

Query: 189 VRILRPG 195
              +R  
Sbjct: 384 PVPIRRA 390


>gi|260856817|ref|YP_003230708.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O26:H11 str.
           11368]
 gi|260869385|ref|YP_003235787.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O111:H- str.
           11128]
 gi|257755466|dbj|BAI26968.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O26:H11 str.
           11368]
 gi|257765741|dbj|BAI37236.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O111:H- str.
           11128]
 gi|323154923|gb|EFZ41115.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli
           EPECa14]
 gi|323180130|gb|EFZ65682.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 1180]
          Length = 750

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L E K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|317008723|gb|ADU79303.1| hydrogenase maturation protein HypF [Helicobacter pylori India7]
          Length = 750

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNVQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++ L    L  +  P    L+      T +      N       +P 
Sbjct: 245 MFKDLNSAKQHAFLNTLECESLISISAP---ILLARKKPDTQLAHNIAKNSPFYGVILPY 301

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++ K I
Sbjct: 302 TPLHALLLDLLDFPIVFTSANFSSLPLASDEKEI 335


>gi|312622662|ref|YP_004024275.1| (nife) hydrogenase maturation protein hypf [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203129|gb|ADQ46456.1| (NiFe) hydrogenase maturation protein HypF [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 757

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 25/168 (14%)

Query: 14  KACEFLD-------AGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           +A E LD        G  +AI      G+       D  N T ++RL+E K+R    PL 
Sbjct: 201 EAIELLDFVSQKILEGYIVAIK-----GIGGFHLVCDPYNETVVKRLFESKRR-EGKPLA 254

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF-RVP 120
               DI +VKK+  V+ +   +   F      ++L    T        +NL T    R  
Sbjct: 255 LVAQDIEVVKKYCYVNKMEEDI---FSSQRCPIILFEKKTEHFSH-VNSNLHTLGIMRAY 310

Query: 121 CGFTKKLIETYGH-PLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 ++   G   L   SAN SG   I +    +   +      ++
Sbjct: 311 TPILDYILSKTGRDFLIATSANLSGIPMIIDESDAI-QKLEGICDYVL 357


>gi|237706668|ref|ZP_04537149.1| hydrogenase maturation protein HypF [Escherichia sp. 3_2_53FAA]
 gi|226899708|gb|EEH85967.1| hydrogenase maturation protein HypF [Escherichia sp. 3_2_53FAA]
          Length = 766

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|56758456|gb|AAW27368.1| unknown [Schistosoma japonicum]
          Length = 114

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 22/109 (20%)

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPL---STANLKTAC 116
           +   +  +S +        +   L     PGP+T++L         PL        +   
Sbjct: 1   MAICLDQVSHISHWCDTKNIPTGLLSDLLPGPVTVLLPRFPDKLQDPLNCHLNPGERRVG 60

Query: 117 FRVPC-GFTKKLIETY------------------GHPLAIPSANRSGQI 146
            R+P  GF +KLI                     GHPL + SAN SGQ 
Sbjct: 61  IRIPDSGFIRKLISALHEQTKLSSTFGNDEYSGGGHPLVLTSANLSGQP 109


>gi|193064993|ref|ZP_03046068.1| carbamoyltransferase HypF [Escherichia coli E22]
 gi|192927290|gb|EDV81909.1| carbamoyltransferase HypF [Escherichia coli E22]
          Length = 766

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|194427873|ref|ZP_03060419.1| carbamoyltransferase HypF [Escherichia coli B171]
 gi|194414106|gb|EDX30382.1| carbamoyltransferase HypF [Escherichia coli B171]
          Length = 766

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|91212071|ref|YP_542057.1| hydrogenase maturation protein HypF [Escherichia coli UTI89]
 gi|91073645|gb|ABE08526.1| hydrogenase maturation protein HypF [Escherichia coli UTI89]
          Length = 774

 Score = 53.1 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|288933899|ref|YP_003437958.1| (NiFe) hydrogenase maturation protein HypF [Klebsiella variicola
           At-22]
 gi|288888628|gb|ADC56946.1| (NiFe) hydrogenase maturation protein HypF [Klebsiella variicola
           At-22]
          Length = 744

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           ++    AL+ A   L AG  +AI      G+       D+ NP A+  L   K RPA  P
Sbjct: 191 TLNSEAALQAAITRLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KP 244

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   +         A +   +  L     P    +++     + +       L      +
Sbjct: 245 LAVMLPSA------AGLPADAAALMGS--PAAPIVLIAKAQVSGLCDKIAPGLAEVGVML 296

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
           P       L++    P+ + S N SG+    +    L+ 
Sbjct: 297 PSNPLQHLLLQALARPIVMTSGNLSGRPPALSNAQALND 335


>gi|216576|dbj|BAA03315.1| HYDA [Escherichia coli]
          Length = 749

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|331678684|ref|ZP_08379358.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H591]
 gi|331073514|gb|EGI44835.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H591]
          Length = 774

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN TA+  L   K RPA  PL         +   A   P +     L  P    +
Sbjct: 250 LACDARNSTAVATLRARKHRPA-KPLAV-------ILPVAEGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|218555254|ref|YP_002388167.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli IAI1]
 gi|260845354|ref|YP_003223132.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O103:H2 str.
           12009]
 gi|307314403|ref|ZP_07594008.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli W]
 gi|218362022|emb|CAQ99629.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli IAI1]
 gi|257760501|dbj|BAI31998.1| carbamoyl phosphate phosphatase HypF [Escherichia coli O103:H2 str.
           12009]
 gi|306905971|gb|EFN36492.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli W]
 gi|315061988|gb|ADT76315.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli W]
 gi|323377430|gb|ADX49698.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli KO11]
          Length = 750

 Score = 52.8 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|308062917|gb|ADO04804.1| transcriptional regulator (hypF) [Helicobacter pylori Sat464]
          Length = 757

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNCQTIERLRLLKNRPL-KPFAL 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 252 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPDTQLAPNIAKNSPFYGVILPYT 309

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 310 PLHALLLDLLDFPIIFTSANFSSLPLASDEAEI 342


>gi|300930568|ref|ZP_07145961.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           187-1]
 gi|300461560|gb|EFK25053.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           187-1]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|323935733|gb|EGB32047.1| hydrogenase maturation protein HypF [Escherichia coli E1520]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|323188876|gb|EFZ74161.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli
           RN587/1]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|222034405|emb|CAP77147.1| Carbamoyltransferase hypF [Escherichia coli LF82]
 gi|312947240|gb|ADR28067.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli O83:H1 str. NRG 857C]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|117624943|ref|YP_853931.1| hydrogenase maturation protein HypF [Escherichia coli APEC O1]
 gi|218559700|ref|YP_002392613.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli S88]
 gi|306812410|ref|ZP_07446608.1| hydrogenase maturation protein [Escherichia coli NC101]
 gi|115514067|gb|ABJ02142.1| hydrogenase maturation protein HypF [Escherichia coli APEC O1]
 gi|218366469|emb|CAR04221.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli S88]
 gi|294492182|gb|ADE90938.1| carbamoyltransferase HypF [Escherichia coli IHE3034]
 gi|305854448|gb|EFM54886.1| hydrogenase maturation protein [Escherichia coli NC101]
 gi|307625719|gb|ADN70023.1| hydrogenase maturation protein [Escherichia coli UM146]
 gi|323951070|gb|EGB46946.1| hydrogenase maturation protein HypF [Escherichia coli H252]
 gi|323957078|gb|EGB52803.1| hydrogenase maturation protein HypF [Escherichia coli H263]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|324119961|gb|EGC13839.1| hydrogenase maturation protein HypF [Escherichia coli E1167]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|256024781|ref|ZP_05438646.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia sp. 4_1_40B]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|331643395|ref|ZP_08344526.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H736]
 gi|331036866|gb|EGI09090.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli H736]
          Length = 774

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|194438979|ref|ZP_03071063.1| carbamoyltransferase HypF [Escherichia coli 101-1]
 gi|194422100|gb|EDX38103.1| carbamoyltransferase HypF [Escherichia coli 101-1]
          Length = 766

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|317181066|dbj|BAJ58852.1| transcriptional regulator [Helicobacter pylori F32]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              +++  K+HA ++ L    L     P    L+      T + P    N       +P 
Sbjct: 245 MFKNLNTAKQHAFLNELECESLNSASAP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 301

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++   I
Sbjct: 302 TPLHALLLDLLDFPIIFTSANFSSLPLASDEDEI 335


>gi|300954949|ref|ZP_07167363.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           175-1]
 gi|300318113|gb|EFJ67897.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           175-1]
          Length = 761

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 237 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 287

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 288 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 347

Query: 154 ILSS 157
            L+ 
Sbjct: 348 ALAD 351


>gi|209920151|ref|YP_002294235.1| transcriptional regulator [Escherichia coli SE11]
 gi|209913410|dbj|BAG78484.1| transcriptional regulator [Escherichia coli SE11]
 gi|324017064|gb|EGB86283.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           117-3]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|115523264|ref|YP_780175.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris BisA53]
 gi|115517211|gb|ABJ05195.1| (NiFe) hydrogenase maturation protein HypF [Rhodopseudomonas
           palustris BisA53]
          Length = 751

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 23/171 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           + +    L AG  +A+ +   Y L  D+RN  A+  L   K R A  P    V+  + + 
Sbjct: 198 VAEIVARLRAGAIVALKSLGGYHLLCDARNEAAVVELRRRKGRDA-KPFAVMVASEATLD 256

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--E 129
                +     L       P+ L   L S   + P     L      +P      L+  E
Sbjct: 257 GIVEANAAERALLTSV-ERPIVL---LKSRGALAPSVAPALAHVGVMLPYTPLHHLLFHE 312

Query: 130 TYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             G P             L   SAN  G   + +     +  +     LI+
Sbjct: 313 AAGAPEGRAWQQAPVDLVLVATSANCGGDPIVIDDA---ARKLAGIADLIV 360


>gi|254037751|ref|ZP_04871809.1| carbamoyltransferase HypF [Escherichia sp. 1_1_43]
 gi|226839375|gb|EEH71396.1| carbamoyltransferase HypF [Escherichia sp. 1_1_43]
          Length = 774

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|16130619|ref|NP_417192.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli str. K-12 substr. MG1655]
 gi|89109499|ref|AP_003279.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli str. K-12 substr. W3110]
 gi|170082288|ref|YP_001731608.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli str. K-12 substr. DH10B]
 gi|238901849|ref|YP_002927645.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli BW2952]
 gi|300947012|ref|ZP_07161237.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           116-1]
 gi|301645310|ref|ZP_07245259.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           146-1]
 gi|307139399|ref|ZP_07498755.1| hydrogenase maturation protein [Escherichia coli H736]
 gi|2506575|sp|P30131|HYPF_ECOLI RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl
           phosphate-converting enzyme hypF; AltName:
           Full=[NiFe]-hydrogenase maturation factor hypF;
           Short=Hydrogenase maturation protein hypF
 gi|2367152|gb|AAC75754.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli str. K-12 substr. MG1655]
 gi|85675533|dbj|BAE76789.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli str. K12 substr. W3110]
 gi|169890123|gb|ACB03830.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli str. K-12 substr. DH10B]
 gi|238860102|gb|ACR62100.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli BW2952]
 gi|260448238|gb|ACX38660.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli DH1]
 gi|300453353|gb|EFK16973.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           116-1]
 gi|301076403|gb|EFK91209.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           146-1]
 gi|315137319|dbj|BAJ44478.1| carbamoyl phosphate phosphatase and maturationprotein for [NiFe]
           hydrogenases [Escherichia coli DH1]
 gi|315615097|gb|EFU95734.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 3431]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|253772433|ref|YP_003035264.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162643|ref|YP_003045751.1| carbamoyl phosphate phosphatase and maturation protein [Escherichia
           coli B str. REL606]
 gi|242378269|emb|CAQ33044.1| hydrogenase maturation protein, carbamoyltransferase [Escherichia
           coli BL21(DE3)]
 gi|253323477|gb|ACT28079.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974544|gb|ACT40215.1| carbamoyl phosphate phosphatase and maturation protein [Escherichia
           coli B str. REL606]
 gi|253978711|gb|ACT44381.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli BL21(DE3)]
 gi|323960629|gb|EGB56255.1| hydrogenase maturation protein HypF [Escherichia coli H489]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|108562469|ref|YP_626785.1| transcriptional regulator [Helicobacter pylori HPAG1]
 gi|107836242|gb|ABF84111.1| transcriptional regulator [Helicobacter pylori HPAG1]
          Length = 769

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 210 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 263

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++ VK+HA ++ L    L+ +  P    L+      T + P    N       +P 
Sbjct: 264 MFKDLNSVKQHAFLNALECESLSSISAP---ILLARKKPDTQLAPNIAKNSSFYGVILPY 320

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S      +   I
Sbjct: 321 TPLHALLLDLLDFPIVFTSANFSSLPLANDEAEI 354


>gi|332280634|ref|ZP_08393047.1| hydrogenase maturation protein HypF [Shigella sp. D9]
 gi|332102986|gb|EGJ06332.1| hydrogenase maturation protein HypF [Shigella sp. D9]
          Length = 766

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN TA+  L   K RPA  PL         +   A   P +     L  P    +
Sbjct: 242 LACDARNSTAVATLRARKHRPA-KPLAV-------ILPVAEGLPDAARQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|317033932|ref|XP_001395669.2| expressed protein [Aspergillus niger CBS 513.88]
          Length = 257

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 24/177 (13%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++  + L  G  + IPT+  Y L     +  A +++++  K R   +  I  +       
Sbjct: 20  KQTYDTLKNGGVVIIPTDVGYAL---LTSTQAGVQQIFSAKDRREGHN-IGIIGTYKQHY 75

Query: 72  KHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRV 119
           +   +      + ++       +  ++    T ++HP   A             T    V
Sbjct: 76  EIHVLSEAKFEMTRVLTEDMAMIVGIIAKYDTENLHPRLAALDPATLSQVTKGDTVSIAV 135

Query: 120 PC-GFTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           P   F ++L         G  +   SAN +GQ     V+  +   +   + L++D G
Sbjct: 136 PEGPFLRELGRLCDDDPTGMLMFGTSANLTGQGQRFRVED-IEPKVINAVDLVVDYG 191


>gi|323183235|gb|EFZ68632.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 1357]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|300815885|ref|ZP_07096109.1| hypothetical protein
 gi|300820486|ref|ZP_07100637.1| hypothetical protein
 gi|331669444|ref|ZP_08370290.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA271]
 gi|300526750|gb|EFK47819.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           119-7]
 gi|300531814|gb|EFK52876.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           107-1]
 gi|331063112|gb|EGI35025.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA271]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN TA+  L   K RPA  PL         +   A   P +     L  P    +
Sbjct: 226 LACDARNSTAVATLRARKHRPA-KPLAV-------ILPVAEGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|882605|gb|AAA69222.1| CG Site No. 18232; alternate gene name hypF [Escherichia coli str.
           K-12 substr. MG1655]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|323941458|gb|EGB37641.1| hydrogenase maturation protein HypF [Escherichia coli E482]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|309703071|emb|CBJ02403.1| hydrogenase maturation protein [Escherichia coli ETEC H10407]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|288932160|ref|YP_003436220.1| (NiFe) hydrogenase maturation protein HypF [Ferroglobus placidus
           DSM 10642]
 gi|288894408|gb|ADC65945.1| (NiFe) hydrogenase maturation protein HypF [Ferroglobus placidus
           DSM 10642]
          Length = 745

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 33/206 (16%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+++A   +D+G  +AI      G+        + N   + +L +I +RP   P    V
Sbjct: 192 EAVKEAARMIDSGSFVAIK-----GIGGIHLSCLTENEI-VWKLRKILRRPQ-QPFAVMV 244

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            DI   K  A +    +   K F   P+ +    +    + P     L T    +P    
Sbjct: 245 RDIEAAKNLAELSEEEIEELKSFR-RPILVCKKRVDLEAVAP----KLDTIGIMLPYTPL 299

Query: 125 KKLIETY--GHPLAIPSANRSGQISITNVKHI---LSSSICK--EIPLIIDGGISKIGLE 177
             ++  +     + + SAN   +   T+ + +     + +     I   +D         
Sbjct: 300 HYILFKFLKAEAVVMTSANFPSEPMATSFEELKVPYDAFLNHNMRIANRVDD-------- 351

Query: 178 STIVNVQCEKKVRILRPGGLEIETLK 203
            ++V     +++ I R  G   E ++
Sbjct: 352 -SVVKFVNGRRMIIRRSRGFVPEPIE 376


>gi|256019511|ref|ZP_05433376.1| transcriptional regulatory protein [Shigella sp. D9]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN TA+  L   K RPA  PL         +   A   P +     L  P    +
Sbjct: 226 LACDARNSTAVATLRARKHRPA-KPLAV-------ILPVAEGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|110642832|ref|YP_670562.1| hydrogenase maturation protein HypF [Escherichia coli 536]
 gi|191171445|ref|ZP_03032994.1| carbamoyltransferase HypF [Escherichia coli F11]
 gi|300975055|ref|ZP_07172856.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           200-1]
 gi|110344424|gb|ABG70661.1| hydrogenase maturation protein HypF [Escherichia coli 536]
 gi|190908379|gb|EDV67969.1| carbamoyltransferase HypF [Escherichia coli F11]
 gi|300308823|gb|EFJ63343.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           200-1]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|331664263|ref|ZP_08365169.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA143]
 gi|331058194|gb|EGI30175.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli TA143]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|194432970|ref|ZP_03065253.1| carbamoyltransferase HypF [Shigella dysenteriae 1012]
 gi|194418697|gb|EDX34783.1| carbamoyltransferase HypF [Shigella dysenteriae 1012]
          Length = 774

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|188495655|ref|ZP_03002925.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 53638]
 gi|312973079|ref|ZP_07787252.1| hydrogenase maturation protein HypF [Escherichia coli 1827-70]
 gi|188490854|gb|EDU65957.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli 53638]
 gi|310333021|gb|EFQ00235.1| hydrogenase maturation protein HypF [Escherichia coli 1827-70]
 gi|332344592|gb|AEE57926.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli
           UMNK88]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|324005742|gb|EGB74961.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           57-2]
          Length = 565

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P   
Sbjct: 242 YHLACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAP 292

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNV 151
            +++D     ++      +L      +P       L++    PL + S N SG+    + 
Sbjct: 293 IVLVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN 352

Query: 152 KHILSS 157
           +  L+ 
Sbjct: 353 EQALAD 358


>gi|324013700|gb|EGB82919.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           60-1]
          Length = 765

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 241 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 291

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 292 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 351

Query: 154 ILSS 157
            L+ 
Sbjct: 352 ALAD 355


>gi|218690834|ref|YP_002399046.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli ED1a]
 gi|218428398|emb|CAR09324.2| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia coli ED1a]
          Length = 750

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|206576597|ref|YP_002236943.1| carbamoyltransferase HypF [Klebsiella pneumoniae 342]
 gi|206565655|gb|ACI07431.1| carbamoyltransferase HypF [Klebsiella pneumoniae 342]
          Length = 744

 Score = 52.8 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 20/159 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           ++    AL+ A   L AG  +AI      G+       D+ NP A+  L   K RPA  P
Sbjct: 191 TLNSEAALQAAITRLAAGDIVAIK-----GIGGFHLACDAGNPAAVATLRARKHRPA-KP 244

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   +         A +   +  L     P    +++     + +       L      +
Sbjct: 245 LAVMLPSA------AGLPADAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVML 296

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
           P       L++    P+ + S N SG+    +    L+ 
Sbjct: 297 PSNPLQHLLLQALARPIVMTSGNLSGRPPALSNAQALND 335


>gi|320186498|gb|EFW61226.1| NiFe hydrogenase metallocenter assembly protein HypF [Shigella
           flexneri CDC 796-83]
          Length = 766

 Score = 52.8 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|187730350|ref|YP_001881540.1| carbamoyltransferase HypF [Shigella boydii CDC 3083-94]
 gi|187427342|gb|ACD06616.1| carbamoyltransferase HypF [Shigella boydii CDC 3083-94]
          Length = 750

 Score = 52.8 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|300924239|ref|ZP_07140225.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           182-1]
 gi|300419538|gb|EFK02849.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           182-1]
          Length = 750

 Score = 52.8 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|308061347|gb|ADO03235.1| transcriptional regulator (hypF) [Helicobacter pylori Cuz20]
          Length = 750

 Score = 52.8 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA +  L    L     P    L+      T + P    N       +P 
Sbjct: 245 MFKDLNTAKQHAFLSALECESLNSTSTP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 301

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++   I
Sbjct: 302 TPLHALLLDLLDFPIIFTSANFSSLPLASDEAEI 335


>gi|301326263|ref|ZP_07219639.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           78-1]
 gi|300847003|gb|EFK74763.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           78-1]
          Length = 763

 Score = 52.8 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 239 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 289

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 290 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 349

Query: 154 ILSS 157
            L+ 
Sbjct: 350 ALAD 353


>gi|82545213|ref|YP_409160.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|81246624|gb|ABB67332.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|332091888|gb|EGI96966.1| [NiFe] hydrogenase maturation protein HypF [Shigella boydii
           3594-74]
          Length = 750

 Score = 52.8 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|157156292|ref|YP_001464020.1| carbamoyltransferase HypF [Escherichia coli E24377A]
 gi|157078322|gb|ABV18030.1| carbamoyltransferase HypF [Escherichia coli E24377A]
          Length = 750

 Score = 52.8 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|320180868|gb|EFW55791.1| carbamoyltransferase HypF [Shigella boydii ATCC 9905]
 gi|332087430|gb|EGI92558.1| [NiFe] hydrogenase maturation protein HypF [Shigella boydii
           5216-82]
 gi|332088635|gb|EGI93748.1| [NiFe] hydrogenase maturation protein HypF [Shigella dysenteriae
           155-74]
          Length = 734

 Score = 52.8 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 210 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 260

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 261 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 320

Query: 154 ILSS 157
            L+ 
Sbjct: 321 ALAD 324


>gi|323173005|gb|EFZ58636.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli LT-68]
          Length = 750

 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|208434018|ref|YP_002265684.1| transcriptional regulator [Helicobacter pylori G27]
 gi|208431947|gb|ACI26818.1| transcriptional regulator [Helicobacter pylori G27]
          Length = 750

 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECVKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++      L+ +  P    L+      T + P    N       +P 
Sbjct: 245 MFKDLNSAKQHAFLNASECESLSSISAP---ILLARKKPDTQLAPNIAKNSPFYGVILPY 301

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++ K I
Sbjct: 302 TPLHALLLDLLDFPIVFTSANFSSLPLASDEKEI 335


>gi|74313276|ref|YP_311695.1| transcriptional regulatory protein [Shigella sonnei Ss046]
 gi|73856753|gb|AAZ89460.1| transcriptional regulatory protein [Shigella sonnei Ss046]
          Length = 750

 Score = 52.4 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|297521747|ref|ZP_06940133.1| hydrogenase maturation protein [Escherichia coli OP50]
          Length = 644

 Score = 52.4 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 141 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 191

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 192 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 251

Query: 154 ILSS 157
            L+ 
Sbjct: 252 ALAD 255


>gi|170019042|ref|YP_001723996.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli ATCC
           8739]
 gi|169753970|gb|ACA76669.1| (NiFe) hydrogenase maturation protein HypF [Escherichia coli ATCC
           8739]
          Length = 750

 Score = 52.4 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + K 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNKQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|254166713|ref|ZP_04873567.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei
           T469]
 gi|289596358|ref|YP_003483054.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei
           T469]
 gi|197624323|gb|EDY36884.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei
           T469]
 gi|289534145|gb|ADD08492.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei
           T469]
          Length = 766

 Score = 52.4 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 24/196 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN--PLICHV 64
           L+ A   +D G  IAI      G+       D+RN   +    E++KR      P     
Sbjct: 203 LKNAAVLIDKGYIIAIK-----GIGGFHIACDARNDETVG---ELRKRIRRKAQPFAIMA 254

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---C 121
            D++ +++ A +D         +   P+TL L       +    +  L T    +P    
Sbjct: 255 RDLNTIEEFAIIDDEEKEEINSYR-RPITL-LKKRDPFPLPDNLSPGLHTIGVMLPYTGL 312

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTI 180
            +           +   SAN      I +   I    I   +   +      +  ++ ++
Sbjct: 313 HYILFHHSQSDVYVM-TSANYPDFPMIKDNDKI--QEIKDAVDYFLIHNRRIVNRVDDSV 369

Query: 181 VNVQCEKKVRILRPGG 196
           V     K+  I R  G
Sbjct: 370 VRFVDGKRAVIRRSRG 385


>gi|323167116|gb|EFZ52834.1| [NiFe] hydrogenase maturation protein HypF [Shigella sonnei 53G]
          Length = 750

 Score = 52.4 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L+ 
Sbjct: 337 ALAD 340


>gi|226949077|ref|YP_002804168.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           A2 str. Kyoto]
 gi|226843898|gb|ACO86564.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           A2 str. Kyoto]
          Length = 812

 Score = 52.4 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 14/151 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  A E +  G  +A     V G+       + +N  AI  L   KKRP   PL     D
Sbjct: 247 IYTAIELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKD 300

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           + +VK+   V  L   + +        L+L   +T  +    +   K     +P      
Sbjct: 301 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 358

Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156
           L+   G   +   S N SG+         + 
Sbjct: 359 LLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389


>gi|315289229|gb|EFU48624.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           110-3]
          Length = 574

 Score = 52.4 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|301027542|ref|ZP_07190878.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           196-1]
 gi|299879294|gb|EFI87505.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           196-1]
          Length = 539

 Score = 52.4 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 15  LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 65

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 66  LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 125

Query: 154 ILSS 157
            L+ 
Sbjct: 126 ALAD 129


>gi|120601360|ref|YP_965760.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris
           DP4]
 gi|120561589|gb|ABM27333.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio vulgaris
           DP4]
          Length = 792

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLA 84
           LA D+ +  A+  L E K+RP   PL   V D+  V++ A+  P    L 
Sbjct: 237 LACDATDDAAVTTLRERKRRP-HKPLAVMVPDMDTVRRIAAPTPDEERLI 285


>gi|328954542|ref|YP_004371876.1| (NiFe) hydrogenase maturation protein HypF [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454866|gb|AEB10695.1| (NiFe) hydrogenase maturation protein HypF [Desulfobacca
           acetoxidans DSM 11109]
          Length = 759

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 24/186 (12%)

Query: 12  LRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           L +A E L  G  IAI  +++ G  LA D+R    ++ L + K R    P    V D++ 
Sbjct: 201 LTRAAEMLWNGKIIAI--KSLGGFHLACDARQEPVVQLLRQRKGR-RDKPFAVMVRDLAA 257

Query: 70  VKKHASVDPLSLHLAKLFW---PGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTK 125
            +         L+  +  W   P    ++    +   I        +     +P      
Sbjct: 258 AEAICE-----LNRFEKSWLRSPASPIVLARQRANPGIAASLAPGNRYLGLMLPYTPLHL 312

Query: 126 KLIETYGHPLAIPSANRSGQISI-TNVK------HILSSSICKEIPLIIDGGIS---KIG 175
            L +     L + S NRS +    TN +       +  + +     + +    S    + 
Sbjct: 313 LLFQHSPDALVMTSGNRSEEPLAFTNDEARRTLGELADAFLFHNRDIHVPCDDSVVRPLH 372

Query: 176 LESTIV 181
             STI+
Sbjct: 373 DGSTII 378


>gi|322806074|emb|CBZ03641.1| [NiFe] hydrogenase metallocenter assembly protein HypF [Clostridium
           botulinum H04402 065]
          Length = 651

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 14/151 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  A E +  G  +A     V G+       + +N  AI  L   KKRP   PL     D
Sbjct: 86  IYTAIELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKD 139

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           + +VK+   V  L   + +        L+L   +T  +    +   K     +P      
Sbjct: 140 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 197

Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156
           L+   G   +   S N SG+         + 
Sbjct: 198 LLFKQGLDIIIATSGNVSGRPMEYKNCEAIE 228


>gi|317013471|gb|ADU80907.1| putative transcriptional regulator [Helicobacter pylori
           Gambia94/24]
          Length = 750

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 245 MFKDLNAAKQHAFLNALECESLNS-TSAPI-LLARKKPDTKLAPNIAKNSPFYGVILPYT 302

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN +     ++ K I
Sbjct: 303 PLHALLLDLLDSPIVFTSANFNSLPLASDEKEI 335


>gi|292669357|ref|ZP_06602783.1| hydrogenase maturation protein HypF [Selenomonas noxia ATCC 43541]
 gi|292648992|gb|EFF66964.1| hydrogenase maturation protein HypF [Selenomonas noxia ATCC 43541]
          Length = 780

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 26/172 (15%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAI-----RRLYEIKKRPAM 57
           D N L KA E + AG  +AI      G+       D+R+  A+     R+  E K     
Sbjct: 210 DGNPLEKAREIIAAGGIVAIK-----GIGGYHLACDARSDEAVTRLRRRKRREAK----- 259

Query: 58  NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTA 115
             L      +  V++  +V            P    ++L      +  + P         
Sbjct: 260 -ALAVMAGALETVRRLCAVSEEEERWLAS--PAAPIVLLQRRPDAEDAVAPSVAPGNPCL 316

Query: 116 CFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              +P      L+        + SAN SG+  I +        + +    I+
Sbjct: 317 GVMLPYAPIHFLLLAPDDLWVMTSANLSGEPIIYDDAAA-EQGLAEIADAIL 367


>gi|283850430|ref|ZP_06367719.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio sp.
           FW1012B]
 gi|283574456|gb|EFC22427.1| (NiFe) hydrogenase maturation protein HypF [Desulfovibrio sp.
           FW1012B]
          Length = 782

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 22/162 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+    + L  G   A     V GL       D+ + TA+  L   K+RP+   L   
Sbjct: 203 PAAVTALAQALAQGQVAA-----VKGLGGFHLVCDAASETAVATLRHRKRRPS-KALAVM 256

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP--- 120
           V D+    +   V   +  L       P+TL L   + + + P    + +     +P   
Sbjct: 257 VPDLPTAARLGRVGERAGALLTG-TVRPITL-LPARTDSGLTPNVAPDTREIGVMLPYTP 314

Query: 121 -CGFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILS 156
                         P     L + S N  G+      +  L+
Sbjct: 315 LHHLLLGAYARAAGPDRLPALVMTSGNAGGEPISLGNREALA 356


>gi|255943590|ref|XP_002562563.1| Pc19g00760 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587297|emb|CAP79492.1| Pc19g00760 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 257

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 73/218 (33%), Gaps = 44/218 (20%)

Query: 7   TDSNALRKACEF---LDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLIC 62
           T  N  R A E    L  G  + IPT+  Y L     +  A I+R++  K R   +  I 
Sbjct: 11  TAPNVPRDAKETYNTLKRGGVVIIPTDVGYAL---LTSTQAGIQRIFSAKDRREGHN-IG 66

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLS----------T 109
            +       +   V   +           + +++ +++  D   +HP             
Sbjct: 67  IIGTYKQ-HRDIHVLSEAKFEMTGVLTEDMAMIVGVIAKYDTENLHPRLATLDPATLPQV 125

Query: 110 ANLKTACFRVPC-GFTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEI 163
               T    VP   F ++L         G      SAN +GQ     V+  +   +   I
Sbjct: 126 TKGDTVSIAVPEGPFLRELGRLCDEDPEGMLTFGTSANLTGQGQRFRVED-IEPRVIDAI 184

Query: 164 PLIIDGGISKIGLESTIVNVQCEKKVRILRPGGLEIET 201
            L++D G+               +K +  R GG+  + 
Sbjct: 185 DLVVDYGL---------------QKWQAYRRGGVNFDA 207


>gi|83642986|ref|YP_431421.1| [NiFe] hydrogenase maturation protein HypF [Hahella chejuensis KCTC
           2396]
 gi|83631029|gb|ABC26996.1| [NiFe] hydrogenase maturation protein HypF [Hahella chejuensis KCTC
           2396]
          Length = 785

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 27/168 (16%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A + L  G  IA     V G+       D+ N  A+  L + K+RP   P     
Sbjct: 205 DPIAAAWQGLSQGQIIA-----VKGVGGVHLLCDAGNARAVADLRQRKQRP-HKPFAIMT 258

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            + + +   A +D  +  L +     P+ L                         P    
Sbjct: 259 LNRASLAGMAEIDDHTEQLLQGA-DAPIALTRKGPDCDRRLSGVAPQCADIGVMYPYAPI 317

Query: 125 KKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSS 157
             L+  +    P             L + SAN SG+  IT+    L  
Sbjct: 318 HYLLFHQALRCPADTTWLEQAQPLTLVVTSANLSGEPLITDNAQCLRD 365


>gi|83774278|dbj|BAE64402.1| unnamed protein product [Aspergillus oryzae]
          Length = 281

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 41/203 (20%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPT-AIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           L  G  + IPT+  Y L     +    I+R++  K R   +  I  +       +   V 
Sbjct: 50  LKRGGVVIIPTDVGYAL---LTSTQTGIQRIFSAKDRREGHN-IGIIGTYKQ-HRQIHVL 104

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTA----------NLKTACFRVPC-GF 123
             +           + +++ +++  D   +HP   A             T    VP   F
Sbjct: 105 SEAKFEMTRVLTEDMAMIVGIIAKYDTKSLHPRLAALDPATLSQVTKGDTVSIAVPEGPF 164

Query: 124 TKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
            ++L         G  +   SAN +GQ     ++  +   +   + L++D G+       
Sbjct: 165 LRELGRLCDEGPEGMLMFGTSANLTGQGQRFRIED-IEPRVIDAVDLVVDYGL------- 216

Query: 179 TIVNVQCEKKVRILRPGGLEIET 201
                   +K ++ R GG+  + 
Sbjct: 217 --------QKWQVYRRGGVNFDA 231


>gi|187250803|ref|YP_001875285.1| (NiFe) hydrogenase maturation protein [Elusimicrobium minutum
           Pei191]
 gi|186970963|gb|ACC97948.1| (NiFe) hydrogenase maturation protein [Elusimicrobium minutum
           Pei191]
          Length = 736

 Score = 52.4 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 62/182 (34%), Gaps = 38/182 (20%)

Query: 10  NALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            AL+ A  FLD G   A     V     Y LA D++NP A+  L   KKRP   PL    
Sbjct: 199 KALKTAAVFLDKGKITA-----VKSIGGYHLACDAKNPKAVTSLRLSKKRPY-KPLAIMF 252

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST-----------------TDIHPL 107
            D+   KK+  ++ +      L  P    +++                      T +H +
Sbjct: 253 KDLKTAKKYCFINKIEAR--ALLSPAAPIVIVKKKKELKLISDNLNNYGIMLPYTPLHKI 310

Query: 108 STANLKTACFRVPCGFTK--KLIETYGHPLAIPSANRSG------QISITNVKHILSSSI 159
             + LKT    +  G  K   L    G      S    G      +I       I+  ++
Sbjct: 311 LFSLLKTDVLVMTSGNAKGGALCSGDGEAFKKLSKIADGFLYHEREIYNKVDDSIMFEAL 370

Query: 160 CK 161
            K
Sbjct: 371 GK 372


>gi|134078157|emb|CAK40238.1| unnamed protein product [Aspergillus niger]
          Length = 353

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 80/242 (33%), Gaps = 36/242 (14%)

Query: 3   IMSITDSNALRKAC---EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
             S T  + LR A    E +       IP    YGL     +P A+ RL+  K+R     
Sbjct: 108 TYSTTPIDVLRDAERVFEVIKNQGIALIPGSIGYGLVAS--DPAALDRLFTTKRRKPHK- 164

Query: 60  LICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLD-----LLSTTDIHPLSTANLK 113
                   +M+  +A    +  L   +      LT+ LD            HP+      
Sbjct: 165 ------KHAMIGSYALHQEIHVLPAREESMVRTLTVDLDVPVGVAAPFRADHPIIQKLGP 218

Query: 114 TACFRVPCGFTK--------------KLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
               R     T               +L    G PL   SAN SG      ++  +   I
Sbjct: 219 ELLSRCTHDGTLSMLVNGGPLQDELIRLCHAAGLPLLGSSANISGSGMKVRLED-IEPEI 277

Query: 160 CKEIPLIIDGGISKIGLE---STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
            +   ++ID G     +    STI+N +  K VR      +  + L++   VEL     +
Sbjct: 278 VEAADIVIDYGKRTFSVPRASSTIINFRDMKLVRYGACYDVIQDVLRKFYGVELPEDPGK 337

Query: 217 TS 218
             
Sbjct: 338 DE 339


>gi|325496247|gb|EGC94106.1| carbamoyl phosphate phosphatase and maturation protein for [NiFe]
           hydrogenases [Escherichia fergusonii ECD227]
          Length = 766

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 242 LACDARNSNAVATLRTRKYRPA-KPLAVMLPTAEGL------PDAARQLL--TTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L  
Sbjct: 353 ALED 356


>gi|210631743|ref|ZP_03296985.1| hypothetical protein COLSTE_00870 [Collinsella stercoris DSM 13279]
 gi|210159863|gb|EEA90834.1| hypothetical protein COLSTE_00870 [Collinsella stercoris DSM 13279]
          Length = 1042

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 25/162 (15%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           T    + +  E + +   +AI      GL        + +  A+R L   K+R +  PL 
Sbjct: 233 TSDAIIARCAELIASDGIVAIK-----GLGGFHLACRADSERAVRELRARKRR-SNKPLA 286

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANL-KTACFRVP 120
               D+        V P    L       P+ L+    S +  +P S++ L  +  F +P
Sbjct: 287 IMARDLDAAGALCHVGPKERDLLYGSI-KPIVLLQRRGSMSGENPPSSSGLASSVAFDLP 345

Query: 121 -----------CGFTKKLIETYGH-PLAIPSANRSGQISITN 150
                                 G   L + S N S +    +
Sbjct: 346 ELGIMLPYTPLQHLLMAECRVRGIDALVMTSGNLSEEPIEMD 387


>gi|114763661|ref|ZP_01443055.1| hydrogenase maturation factor F [Pelagibaca bermudensis HTCC2601]
 gi|114543662|gb|EAU46675.1| hydrogenase maturation factor F [Roseovarius sp. HTCC2601]
          Length = 742

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           +A+ +A E L  G  +A     V GL       D+ +  A+  L   K+RPA  PL    
Sbjct: 195 DAVARAAEALGRGAILA-----VKGLGGFHLCCDATDAGAVAELRRRKRRPA-KPLALM- 247

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           +   ++K +A+       L +   P    ++L       +            + +P    
Sbjct: 248 ASFEVLKGYAAPGVAERALLEE--PAAPIVLLPKQEG-GLPEALAPGQGALGWMLPYTPL 304

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L    G PL + S N SG+            ++   +   +
Sbjct: 305 HHLLCSAVGRPLVMTSGNLSGEPQAIGNAEA-RETLGGLVDAFL 347


>gi|290511020|ref|ZP_06550389.1| hydrogenase maturation protein HypF [Klebsiella sp. 1_1_55]
 gi|289776013|gb|EFD84012.1| hydrogenase maturation protein HypF [Klebsiella sp. 1_1_55]
          Length = 744

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           ++    AL+ A   L AG  +AI      G+       D+ NPTA+  L   K RPA  P
Sbjct: 191 TLNSEAALQAAITRLAAGDIVAIK-----GIGGFHLACDAGNPTAVATLRARKHRPA-KP 244

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   +         A +   +  L     P    +++     + +       L      +
Sbjct: 245 LAVMLPSA------AGLPADAAALMGS--PAAPIVLIAKAQVSGLCDEIAPGLAEVGVML 296

Query: 120 PCGF-TKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
           P       L++    P+ + S N SG+    +    L+ 
Sbjct: 297 PSNPLQHLLLQALARPIVMTSGNLSGRPPALSNAQALND 335


>gi|71909587|ref|YP_287174.1| hydrogenase maturation protein HypF [Dechloromonas aromatica RCB]
 gi|71849208|gb|AAZ48704.1| Hydrogenase maturation protein HypF [Dechloromonas aromatica RCB]
          Length = 763

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 68/209 (32%), Gaps = 30/209 (14%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D + +      L AG  +AI      GL       D+RN  A+  L E K+R    PL  
Sbjct: 193 DGDPIAACLHLLRAGKIVAIK-----GLGGFHLACDARNAVAVAELRERKQR-EEKPLAV 246

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
              +   +  +A +    L L +        +VL     T++  ++   L      +P  
Sbjct: 247 MGLNADALADYARIGKAELALLQST---AAPIVLCAKGATELQGIA-PGLAWFGVMLPAT 302

Query: 123 FTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
               L+  E  G P             L + SAN  G+  +      L          ++
Sbjct: 303 PLHLLLWHEAAGRPSGSAWLGEPNELLLVMTSANPHGEPLVIANDEALDRLTGIADAYLM 362

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGG 196
                 I  + +++ V       I R  G
Sbjct: 363 HNRDIVIRCDDSVLRVTPGGPAFIRRARG 391


>gi|323971560|gb|EGB66793.1| hydrogenase maturation protein HypF [Escherichia coli TA007]
          Length = 438

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +     +         +  L     P    +
Sbjct: 250 LACDARNSNAVATLRARKHRPA-KPLAVMLPVAEGL------PDAARQLL--TTPAAPIV 300

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 301 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 360

Query: 154 ILSS 157
            L+ 
Sbjct: 361 ALAD 364


>gi|158422221|ref|YP_001523513.1| hydrogenase maturation protein [Azorhizobium caulinodans ORS 571]
 gi|46392529|gb|AAS91025.1| HypF [Azorhizobium caulinodans ORS 571]
 gi|158329110|dbj|BAF86595.1| hydrogenase maturation protein [Azorhizobium caulinodans ORS 571]
          Length = 763

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           +A D+ +   +  L   K+RPA  PL   V+D++  +  A V  L         P    +
Sbjct: 223 IACDATSEAVVAELRRRKQRPA-KPLAVMVADLAAARALAEVSALEAEALSD--PSAPIV 279

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSGQISITNVKH 153
           +L       + P            +        L+ + G PL + SANR+    +   + 
Sbjct: 280 LLRRHLDGPLAPSVAPGQSHVGLMLTYTPLHHLLLASVGGPLVMTSANRANAPQVFRDEE 339

Query: 154 ILSSSICKEIPLII-DGGISKIGLESTIVNVQCEKKVRILRPG 195
              +++   +  ++         LE  +V +     VR++R G
Sbjct: 340 A-EAALAGIVDGLLTHDRPIARRLEDGVVRIAAGG-VRVMRRG 380


>gi|308183848|ref|YP_003927981.1| Hydrogenase maturation protein HypF [Helicobacter pylori SJM180]
 gi|308059768|gb|ADO01664.1| Hydrogenase maturation protein HypF [Helicobacter pylori SJM180]
          Length = 750

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + L  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDLQRGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++ L    L     P    L+      T + P    N       +P 
Sbjct: 245 MFKDLNSAKQHAFLNALECESLNSTSTP---ILLARKKPDTKLAPNIAKNSPFYGVILPY 301

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN +     ++   I
Sbjct: 302 TPLHALLLDLLDSPIVFTSANFNSLPLASDEAEI 335


>gi|170783076|ref|YP_001711410.1| hypothetical protein CMS_2773 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157646|emb|CAQ02845.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 260

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 13  RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            +A + L+A G  +   T+  Y L     +   + R ++ K+R    P +   + I  ++
Sbjct: 16  ERAAQALEAPGGLVVAATKVGYILMT--TDGVGLERKFDAKQRNRDKPGVVLCTSIEQLE 73

Query: 72  KHASVDPLSLHLAKLFWPGPL---TLVLDLLSTTDIHPLSTAN------LKTACFRV--- 119
           + A ++   L   +  W   +    ++        + P   A         T+CF +   
Sbjct: 74  QLAVLNDEILAFYQEHWDADVLLGCILPWREDAKHLIPDEVAGELAMDRRGTSCFVIRFG 133

Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            P     + +   G      SAN SG+ +   V+  +   I ++  +I+
Sbjct: 134 RPAEQLAERLWASGRLSFASSANPSGKGNRGRVEG-IGERIEQQADVIV 181


>gi|145637787|ref|ZP_01793437.1| hypothetical protein CGSHiHH_02755 [Haemophilus influenzae PittHH]
 gi|145269032|gb|EDK08985.1| hypothetical protein CGSHiHH_02755 [Haemophilus influenzae PittHH]
          Length = 94

 Score = 52.0 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 98  LLSTTDIHPLSTANLKTACFR-VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
           + + +      T    +   R       K L E  G  L   SAN +G+        +  
Sbjct: 1   MPAKSTTPHFLTGKFDSIAVRLCDHPSVKALCELTGFALTSTSANLTGEPPCRTADEV-R 59

Query: 157 SSICKEIPLIIDGGISKIGLESTIVNVQCEKKVR 190
                + P ++D  + +    S I +++  +  R
Sbjct: 60  LQFGSDFP-VLDEMVGRAHNPSEIRDLRTNQLFR 92


>gi|331700079|ref|YP_004336318.1| (NiFe) hydrogenase maturation protein HypF [Pseudonocardia
           dioxanivorans CB1190]
 gi|326954768|gb|AEA28465.1| (NiFe) hydrogenase maturation protein HypF [Pseudonocardia
           dioxanivorans CB1190]
          Length = 779

 Score = 51.6 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 49/164 (29%), Gaps = 22/164 (13%)

Query: 17  EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
             L  G  +A     V GL        +    A+R L E K R    P    V+D++  +
Sbjct: 214 RLLADGAVVA-----VKGLGGFHLACRADAADAVRGLRERKSRG-GKPFAVMVADLAAAR 267

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET- 130
           + A VD     +     P    ++L  L +  +              +P      L+ T 
Sbjct: 268 RFARVDDDEAAVLTS--PARPVVLLRRLPSAPVTDQVAPGSPHLGLLLPYTPVHHLLFTQ 325

Query: 131 ---YGHP----LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 P      + SAN S +             +      ++
Sbjct: 326 VPGSTAPVPEAFVLTSANISAEPICHTDADA-RDRLPALCDAVL 368


>gi|317011901|gb|ADU82509.1| hydrogenase maturation protein HypF [Helicobacter pylori
           Lithuania75]
          Length = 750

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D RN   I RL  +KKRP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDGRNFQTIERLRLLKKRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D+   K+HA ++ L    L  +  P    L+      T + P    N       +P 
Sbjct: 245 MFKDLKSAKQHAFLNALEGESLNSVSTP---ILLARKKPDTPLAPNIAKNSPFYGVILPY 301

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++ K I
Sbjct: 302 TPLHALLLDLLDFPIVFTSANFSSLPLASDEKEI 335


>gi|188526857|ref|YP_001909544.1| transcriptional regulator (hypF) [Helicobacter pylori Shi470]
 gi|188143097|gb|ACD47514.1| transcriptional regulator (hypF) [Helicobacter pylori Shi470]
          Length = 750

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 191 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 244

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA +  L           P+ L+      T + P    N       +P  
Sbjct: 245 MFKDLNTAKQHAFLSVLECESLNS-TSAPI-LLARKKPNTQLAPNIAKNSPFYGVILPYT 302

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 303 PLHALLLDLLDFPIIFTSANFSSLPLASDEADI 335


>gi|119900090|ref|YP_935303.1| hydrogenase maturation protein HypF [Azoarcus sp. BH72]
 gi|119672503|emb|CAL96417.1| probable hydrogenase maturation protein HypF [Azoarcus sp. BH72]
          Length = 790

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 51/163 (31%), Gaps = 29/163 (17%)

Query: 19  LDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           L  G  +A     V G+       D+RNP A+ RL E K R    P    V+++   +  
Sbjct: 222 LLCGEIVA-----VKGVGGFHLMCDARNPEAVGRLRERKSR-ENKPFALMVANLESARHW 275

Query: 74  ASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--ET 130
           A +      L     P  P+ L     S           L      +P      L+  + 
Sbjct: 276 ARLSSTDEQLLAA--PERPVVLCDKRPSVDQELWGVAPALAAVGLMLPYTPLHYLLFHDY 333

Query: 131 YGHP-------------LAIPSANRSGQISITNVKHILSSSIC 160
            G P             L   SAN  G+  +T  +      + 
Sbjct: 334 AGRPPGTEWLRRPLDLALVCTSANPGGEPLVTGNREATRRLMG 376


>gi|297379270|gb|ADI34157.1| [NiFe] hydrogenase maturation protein HypF [Helicobacter pylori
           v225d]
          Length = 757

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P   
Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDARNFQTIERLRLLKNRPL-KPFAL 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA +  L           P+ L+      T + P    N       +P  
Sbjct: 252 MFKDLNTAKQHAFLSALECESLNSTSV-PI-LLARKKPDTQLAPNIAKNSPFYGVILPYT 309

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 310 PLHALLLDLLDFPIIFTSANFSSLPLASDEAEI 342


>gi|217978879|ref|YP_002363026.1| (NiFe) hydrogenase maturation protein HypF [Methylocella silvestris
           BL2]
 gi|217504255|gb|ACK51664.1| (NiFe) hydrogenase maturation protein HypF [Methylocella silvestris
           BL2]
          Length = 760

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 70/227 (30%), Gaps = 51/227 (22%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           + +    L  G  +A+      G+       D+ N  A+  L   K+RPA  P    V++
Sbjct: 197 VEEIAVALRHGQIVALK-----GIGGFHLLCDATNERAVATLRRRKRRPA-KPFAVMVAN 250

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
            + V+  A+       L +     P  L   + +   + P     L      +P      
Sbjct: 251 EASVEHIATPSLGERALLRQLA-RPAVL---MRARAGLAPSVAPGLDRVAVMLPSAPVHH 306

Query: 127 LI--ETYGHP-------------LAIPSANRSGQISITNVKHILSS-------------- 157
           L+     G P             L   SAN +G+  I      L +              
Sbjct: 307 LLFHALAGEPKGAAWLDQLQPVALVATSANVAGEPLIIADAEALQALAGVADMIVTHDRP 366

Query: 158 ---SICKEIPLIIDGGISKI----GLESTIVNVQCEKKVRILRPGGL 197
                   +  +IDGG + +    G     +++  +    I   G L
Sbjct: 367 ILMRADDSVMAVIDGGPAYVRRSRGFAPEPIDLGQDGPAVIAVGGHL 413


>gi|94310479|ref|YP_583689.1| (NiFe) hydrogenase maturation protein HypF [Cupriavidus
           metallidurans CH34]
 gi|93354331|gb|ABF08420.1| carbamoyl phosphate phosphatase and maturation protein for (NiFe)
           hydrogenases [Cupriavidus metallidurans CH34]
          Length = 785

 Score = 51.6 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 29/173 (16%)

Query: 15  ACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
               L  G  +AI      GL       D+RN  A+ RL + K+R    P    V++   
Sbjct: 219 VARVLR-GEIVAIK-----GLGGFHLACDARNAEAVARLRDRKQR-EEKPFAVMVANPVT 271

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI- 128
             +   V      +       P+ L+       +        L      +P    + L+ 
Sbjct: 272 AAQWGDV-CSGAEILLAAPERPIVLLRKQRIVDEQLHGVAPGLAWLGVMLPHTPLQYLLF 330

Query: 129 -ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            E  G P             L + SAN  G+  +    H+    +       +
Sbjct: 331 HEAAGRPDGLAWLTQPQPLVLVMTSANPGGEPLVIR-NHVALQRLAGIADAFL 382


>gi|317156139|ref|XP_001825535.2| expressed protein [Aspergillus oryzae RIB40]
          Length = 257

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 41/203 (20%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPT-AIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           L  G  + IPT+  Y L     +    I+R++  K R   +  I  +       +   V 
Sbjct: 26  LKRGGVVIIPTDVGYAL---LTSTQTGIQRIFSAKDRREGHN-IGIIGTYKQ-HRQIHVL 80

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTA----------NLKTACFRVPC-GF 123
             +           + +++ +++  D   +HP   A             T    VP   F
Sbjct: 81  SEAKFEMTRVLTEDMAMIVGIIAKYDTKSLHPRLAALDPATLSQVTKGDTVSIAVPEGPF 140

Query: 124 TKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
            ++L         G  +   SAN +GQ     ++  +   +   + L++D G+       
Sbjct: 141 LRELGRLCDEGPEGMLMFGTSANLTGQGQRFRIED-IEPRVIDAVDLVVDYGL------- 192

Query: 179 TIVNVQCEKKVRILRPGGLEIET 201
                   +K ++ R GG+  + 
Sbjct: 193 --------QKWQVYRRGGVNFDA 207


>gi|110596781|ref|ZP_01385071.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium ferrooxidans
           DSM 13031]
 gi|110341468|gb|EAT59928.1| (NiFe) hydrogenase maturation protein HypF [Chlorobium ferrooxidans
           DSM 13031]
          Length = 776

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 18/156 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + L +    L +G  IA+      G     LAVD+ N  A+RRL   K R A  P    
Sbjct: 219 DDVLAETSTILRSGGIIALK-----GVGGFHLAVDASNEDAVRRLRARKGREA-KPFAVM 272

Query: 64  VSDISMVKKHASVDP-LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           + D  +  ++  +       L     P    ++L     T + P            +   
Sbjct: 273 MRDAVITGRYCELSDGELAALNAAEAP---IVLLKKRDGTALAPSVAPESDRLGVMLAYS 329

Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILS 156
               L+   G P  L + SAN S +   +     + 
Sbjct: 330 PLHALLFD-GSPEVLVMTSANFSEEPITSENDDAVK 364


>gi|238500582|ref|XP_002381525.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220691762|gb|EED48109.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 257

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 41/203 (20%)

Query: 19  LDAGLPIAIPTETVYGLAVDSRNPT-AIRRLYEIKKRPAMNPLICHVSDISMVKKHASVD 77
           L  G  + IPT+  Y L     +    I+R++  K R   +  I  +       +   V 
Sbjct: 26  LKRGGVVIIPTDVGYAL---LTSTQTGIQRIFSAKDRREGHN-IGIIGTYKQ-HRQIHVL 80

Query: 78  PLSLHLAKLFWPGPLTLVLDLLSTTD---IHPLSTA----------NLKTACFRVPC-GF 123
             +           + +++ +++  D   +HP   A             T    VP   F
Sbjct: 81  SEAKFEMTRVLTEDMAMIVGIIAKYDTKSLHPRLAALDPATLSQVTKGDTVSIAVPEGPF 140

Query: 124 TKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
            ++L         G  +   SAN +GQ     ++  +   +   + L++D G+       
Sbjct: 141 LRELGRLCDEDPEGMLMFGTSANLTGQGQRFRIED-IEPRVIDAVDLVVDYGL------- 192

Query: 179 TIVNVQCEKKVRILRPGGLEIET 201
                   +K ++ R GG+  + 
Sbjct: 193 --------QKWQVYRRGGVNFDA 207


>gi|15644679|ref|NP_206849.1| transcriptional regulator (hypF) [Helicobacter pylori 26695]
 gi|2313122|gb|AAD07115.1| transcriptional regulator (hypF) [Helicobacter pylori 26695]
          Length = 769

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 16/154 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D RN   I RL  +K RP   P   
Sbjct: 210 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDGRNFQTIERLRLLKNRPL-KPFAL 263

Query: 63  HVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP- 120
              D++  K+HA ++ L    L     P    L+        + P    N       +P 
Sbjct: 264 MFKDLNTAKQHAFLNALECESLISTSAP---ILLARKKPDIKLAPNIAKNSPFYGVILPY 320

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                 L++    P+   SAN S     ++   I
Sbjct: 321 TPLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 354


>gi|148253520|ref|YP_001238105.1| carbamoyl phosphate phosphatase, (NiFe) hydrogenase maturation
           protein [Bradyrhizobium sp. BTAi1]
 gi|146405693|gb|ABQ34199.1| carbamoyl phosphate phosphatase, (NiFe) Hydrogenase maturation
           protein [Bradyrhizobium sp. BTAi1]
          Length = 752

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 30/175 (17%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAI---RRLYEIKKRPAMNPL 60
           S+ +      L AG  +AI      GL       D+ +  A+   R       R    P 
Sbjct: 195 SHGVDDIAAALAAGQIVAIK-----GLGGYQLLCDAHDEQAVRRLRARKRRDGR----PF 245

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              ++ ++   + A +DP    L +     P+ LV    S   I P     L      +P
Sbjct: 246 AVMLASVAAAIEIADIDPAERALLEQIA-RPIVLV---TSRGGIAPSVAPGLAKVGVMLP 301

Query: 121 C--------GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                       + L       L   SAN SG+  +T       + +     LI+
Sbjct: 302 VAPLHHLIFHELRALHGATARALVCTSANLSGEPLLTGDDEA-RAGLADIADLIV 355


>gi|184155438|ref|YP_001843778.1| hypothetical protein LAF_0962 [Lactobacillus fermentum IFO 3956]
 gi|183226782|dbj|BAG27298.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
 gi|299783237|gb|ADJ41235.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 257

 Score = 51.2 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 18/176 (10%)

Query: 10  NALRKACEFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
            A + A +FL   G  I  PT+  Y +     +   + R ++ K+R    P +     + 
Sbjct: 10  EATQAAIDFLEQDGKMIVSPTKVGYIIMT--TDKAGLERKFDAKQRNRNKPGVVLCGSME 67

Query: 69  MVKKHASVDPLSLHLAKLFWPGP--LTLVLDLLS-------TTDIHPLSTANLKTACFRV 119
            +++ A + P    L +  W     L  +L                 L T    T+CF +
Sbjct: 68  QLEELAEMTPKIRDLYQTHWDQDVLLGCILPWKQEAREKYLGDGREELMTDRRGTSCFVI 127

Query: 120 -----PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
                         +     +   SAN SG+ +   V   +   I     L+I+  
Sbjct: 128 RYGTPSEQLADYFWKKEHKMIYASSANPSGKGNRGKVAG-IGDRIENAADLVIEAD 182


>gi|20092954|ref|NP_619029.1| hydrogenase expression/formation regulatory protein [Methanosarcina
           acetivorans C2A]
 gi|19918267|gb|AAM07509.1| hydrogenase expression/formation regulatory protein [Methanosarcina
           acetivorans C2A]
          Length = 774

 Score = 50.8 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 15/214 (7%)

Query: 10  NALRKACEFLDAGLPIAIPTETV--YG---LAVDSRNPTAIRRLYEIKKRPAMNPLICHV 64
            A+ KA   L  G  +     +V  +G   +A ++R    ++ L +   RP   P     
Sbjct: 203 EAIVKASHLLAQGSIL-----SVKGFGGFHIACNARKEDPVQELRKRLGRPE-QPFAVMA 256

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFT 124
            D  +V+  A      L         P+T VL    T ++    + NL      +P   T
Sbjct: 257 KDTVVVESFAEPGHEDLKCLSSA-HRPIT-VLPKSKTFELAESVSPNLHNIGVMLPYTGT 314

Query: 125 KKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVN 182
           ++L+          + SAN  G+  +   +  L          ++   +     + T++ 
Sbjct: 315 QELLFDLMPDSVYVMTSANLPGRPMVVENEEALEKLKGISDFHLLHNRVIANRNDDTVIR 374

Query: 183 VQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
           V   K   I R  G   E ++    VE    V  
Sbjct: 375 VVNGKSAFIRRSRGFVPEPVELPFEVEAVAGVGA 408


>gi|293449025|ref|ZP_06663446.1| hydrogenase maturation protein HypF [Escherichia coli B088]
 gi|291322115|gb|EFE61544.1| hydrogenase maturation protein HypF [Escherichia coli B088]
 gi|323946410|gb|EGB42438.1| hydrogenase maturation protein HypF [Escherichia coli H120]
          Length = 750

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 226 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 276

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++    PL + S N SG+    + + 
Sbjct: 277 LVDKKYVPELCDDIAPDLNEVGAMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 336

Query: 154 ILSS 157
            L  
Sbjct: 337 ALED 340


>gi|168180410|ref|ZP_02615074.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           NCTC 2916]
 gi|182668716|gb|EDT80694.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           NCTC 2916]
          Length = 812

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 14/151 (9%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  A E +  G  +A     V G+       + +N  AI  L   KKRP   PL     +
Sbjct: 247 IYTAIELIKKGYIVA-----VKGIGGFHLVCNGKNKKAIENLRIRKKRP-HKPLAIMCKN 300

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           + +VK+   V  L   + +        L+L   +T  +    +   K     +P      
Sbjct: 301 LKIVKELCYVSKLEEQILEGT--KKPILILKKKATNILPDNISPFNKHLGVMLPYSPLHY 358

Query: 127 LIETYGH-PLAIPSANRSGQISITNVKHILS 156
           L+   G   +   S N SG+         + 
Sbjct: 359 LLFKEGLDIIIATSGNVSGRPMEYKNCEAIE 389


>gi|27382041|ref|NP_773570.1| hydrogenase maturation protein [Bradyrhizobium japonicum USDA 110]
 gi|27355211|dbj|BAC52195.1| hydrogenase maturation protein [Bradyrhizobium japonicum USDA 110]
          Length = 753

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 22/200 (11%)

Query: 34  GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           GL       D+R+  A++RL + K+R    P    V  +  V   A  D   L L ++  
Sbjct: 215 GLGGYQLICDARDEAAVQRLRQRKERDQ-KPFAVMVGSVDAVAGIADADAAELALLEMA- 272

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--------ETYG--HPLAIP 138
           P P+ L   + S   + P     L      +P      LI        +  G        
Sbjct: 273 PRPIVL---MTSRHRLAPAIAPGLSRIGIMLPVTPLHHLIFEALNSVHKRAGESWATVAT 329

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG-GL 197
           SAN  G+  + + +      +     LI+      +      V      + R +R   G 
Sbjct: 330 SANPGGEPLLLDNREA-ELRLAGIADLIVTHDRDIVTRADDSVAAVVAGRTRFIRRARGY 388

Query: 198 EIETLKRAISVELEYCVDET 217
             E ++ A +V     V   
Sbjct: 389 VPEPVRLAQTVPPILAVGGA 408


>gi|317031888|ref|XP_001393615.2| expressed protein [Aspergillus niger CBS 513.88]
          Length = 247

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/242 (21%), Positives = 80/242 (33%), Gaps = 36/242 (14%)

Query: 3   IMSITDSNALRKAC---EFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
             S T  + LR A    E +       IP    YGL     +P A+ RL+  K+R     
Sbjct: 2   TYSTTPIDVLRDAERVFEVIKNQGIALIPGSIGYGLVAS--DPAALDRLFTTKRRKPHK- 58

Query: 60  LICHVSDISMVKKHASVDPL-SLHLAKLFWPGPLTLVLD-----LLSTTDIHPLSTANLK 113
                   +M+  +A    +  L   +      LT+ LD            HP+      
Sbjct: 59  ------KHAMIGSYALHQEIHVLPAREESMVRTLTVDLDVPVGVAAPFRADHPIIQKLGP 112

Query: 114 TACFRVPCGFTK--------------KLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
               R     T               +L    G PL   SAN SG      ++  +   I
Sbjct: 113 ELLSRCTHDGTLSMLVNGGPLQDELIRLCHAAGLPLLGSSANISGSGMKVRLED-IEPEI 171

Query: 160 CKEIPLIIDGGISKIGLE---STIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
            +   ++ID G     +    STI+N +  K VR      +  + L++   VEL     +
Sbjct: 172 VEAADIVIDYGKRTFSVPRASSTIINFRDMKLVRYGACYDVIQDVLRKFYGVELPEDPGK 231

Query: 217 TS 218
             
Sbjct: 232 DE 233


>gi|288561290|ref|YP_003424776.1| hydrogenase maturation factor HypF [Methanobrevibacter ruminantium
           M1]
 gi|288544000|gb|ADC47884.1| hydrogenase maturation factor HypF [Methanobrevibacter ruminantium
           M1]
          Length = 815

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 18/172 (10%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN 58
           +    ++ L+     LD G   AI      G+       + ++  A+  L E   R    
Sbjct: 215 IDTESNDPLKDTARLLDEGKIFAIK-----GIGGTHLVANVKDEKAVSTLRERLGR-KNQ 268

Query: 59  PLICHVSDISMVKKHASVDPLSLH-LAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACF 117
                  DI  V+  A V       L     P    ++L      D     +  L     
Sbjct: 269 AFAVMSPDIETVRTFAIVSDEEEKTLLSKERP---IVILKKSKDYDFAESVSPRLHNIGV 325

Query: 118 RVPCGFTKKLI-ETYGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167
            +P      L+      P  I  SAN  G+  +   + IL  ++ +     +
Sbjct: 326 MLPYAPLHHLLFNETDSPAYIMTSANVPGEPMMITNEEIL-QNLDEIADYYL 376


>gi|297568211|ref|YP_003689555.1| (NiFe) hydrogenase maturation protein HypF [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924126|gb|ADH84936.1| (NiFe) hydrogenase maturation protein HypF [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 861

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 15/155 (9%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
            +A+ +    L AG  +AI      G+       +  +  A++RL   K RP   PL   
Sbjct: 208 PSAVAETRRRLLAGEIVAIK-----GIGGFHLAVNGADQAAVKRLRRRKGRP-DKPLALM 261

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           V D++  +    + P+  +L     P  P+ L L   +   +        +     +   
Sbjct: 262 VRDLATARGLVQLGPMEENLL--VSPARPIVLALRQAAALPVAAAVAPGNRRLGLMLAYA 319

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
                L+++    L + SAN S +    +      
Sbjct: 320 PLHHLLLDSELPLLVMTSANPSSEPLCIDNDEACR 354


>gi|317010330|gb|ADU84077.1| transcriptional regulatory protein HypF [Helicobacter pylori
           SouthAfrica7]
          Length = 757

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 6   ITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPL 60
           + D +AL +  + +  G  IA+      GL       D+RN   I RL  +K RP   P 
Sbjct: 196 LNDGDALLECAKDIQKGKIIALK-----GLGGFALVCDARNFQTIERLRLLKNRPL-KPF 249

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
                D++  K+HA ++ L     K     P+ L+      T +      N       +P
Sbjct: 250 ALMFKDLNTAKQHAFLNELECESLKSA-NAPI-LLAHKKPNTQLASNIAKNSPFYGVILP 307

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                  L++    P+   SAN +     ++ K +           I D
Sbjct: 308 YTPLHALLLDLLNFPIVFTSANFNSLPLASDEKEL------DRFHFIFD 350


>gi|294811177|ref|ZP_06769820.1| Putative NiFe-hydrogenase maturation protein [Streptomyces
           clavuligerus ATCC 27064]
 gi|326439707|ref|ZP_08214441.1| hydrogenase maturation protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294323776|gb|EFG05419.1| Putative NiFe-hydrogenase maturation protein [Streptomyces
           clavuligerus ATCC 27064]
          Length = 832

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 64/209 (30%), Gaps = 30/209 (14%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLI 61
           T   AL +A   L AG  +A     V     Y LA D+ N   +  L   K R    P  
Sbjct: 231 TGDTALVEARRLLAAGAVLA-----VKGVGGYHLACDAANAGTVALLRRRKNRG-DKPFA 284

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
             V     +     + P    L      GP   ++ L    +      A       R P 
Sbjct: 285 LMVRAPEDIAPLVRLGPEERALL----TGPARPIVLLRRRPEPPGGGPAAADLVAPRAPD 340

Query: 122 --------GFTKKLIETYGHP-----LAIPSANRSGQISITNVKHILSSSICKEIP-LII 167
                        L+   G P     L + S N +G+  +T     L   +   +   + 
Sbjct: 341 LGVMLPYTPLHHLLLGLDGDPEGPRVLVMTSGNLAGEPIVTEDAEAL-ERLAPLVDAWLA 399

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGG 196
                ++  + ++V V     + + R  G
Sbjct: 400 HDRPIRVPCDDSVVRVVDGVPLPLRRSRG 428


>gi|212703719|ref|ZP_03311847.1| hypothetical protein DESPIG_01766 [Desulfovibrio piger ATCC 29098]
 gi|212672871|gb|EEB33354.1| hypothetical protein DESPIG_01766 [Desulfovibrio piger ATCC 29098]
          Length = 845

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+R+  ++  L  ++KR    PL   V D++  ++   + P    L     P    +
Sbjct: 252 LACDARSARSVS-LLRLRKRRPHKPLALMVPDLATARELCDLPPEHEALL--LCPEKPIV 308

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--------ETYGHP---LAIPSANRS 143
           +        + P    +       +P      ++           G P   L + SAN S
Sbjct: 309 LCPARKGC-LPPSIAPDTAAIGIMLPYTPLHAVLFDELVRLTAAAGEPAPVLVMTSANAS 367

Query: 144 GQISITNVKHILS 156
           G+      +  L 
Sbjct: 368 GEPICLGNREALR 380


>gi|215694572|dbj|BAG89565.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 136

 Score = 50.8 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 3  IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDS 39
          I+  T+ + ++ A + ++ G  IA+PT+T+YG A D+
Sbjct: 64 ILPATNDHVMK-AIDSINRGQVIAVPTDTIYGFACDA 99


>gi|210134243|ref|YP_002300682.1| transcriptional regulatory protein HypF [Helicobacter pylori P12]
 gi|210132211|gb|ACJ07202.1| transcriptional regulatory protein HypF [Helicobacter pylori P12]
          Length = 757

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 14/153 (9%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           + +AL +  + +  G  IA+      GL       D RN   I RL  +K RP   P   
Sbjct: 198 NDDALLECAKDIQKGKIIALK-----GLGGFALLCDGRNFQTIERLRLLKNRPL-KPFAL 251

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
              D++  K+HA ++ L           P+ L+      T + P    N       +P  
Sbjct: 252 MFKDLNTAKQHAFLNALECESLNS-TSAPI-LLARKKPNTQLAPNIAKNSPFYGVILPYT 309

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHI 154
                L++    P+   SAN S     ++   I
Sbjct: 310 PLHALLLDLLDFPIVFTSANFSSLPLASDEAEI 342


>gi|254167544|ref|ZP_04874396.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei
           T469]
 gi|197623807|gb|EDY36370.1| (NiFe) hydrogenase maturation protein HypF [Aciduliprofundum boonei
           T469]
          Length = 766

 Score = 50.4 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 23/166 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMN--PLICHV 64
           L+ A   +D G  IAI      G+       D+RN   +    E++KR      P     
Sbjct: 203 LKNAAMLIDKGYIIAIK-----GIGGFHIACDARNDETVG---ELRKRIRRKAQPFAIMA 254

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP---C 121
            D++ +++ A +D         +   P+TL L       +    +  L T    +P    
Sbjct: 255 KDLNTIEEFAIIDDEEKEEINSYR-RPITL-LKKRDPFPLPDNLSPGLHTIGVMLPYTGL 312

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            +           +   SAN      I +   I    I   +   +
Sbjct: 313 HYILFHHSQSDVYVM-TSANYPDFPMIKDNDKI--QEIKDAVDYFL 355


>gi|46561145|gb|AAT00793.1| HypF [Bradyrhizobium japonicum]
          Length = 753

 Score = 50.4 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 22/200 (11%)

Query: 34  GLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           GL       D+R+  A++RL + K+R    P    V  +  V   A  D   L L ++  
Sbjct: 215 GLGGYQLICDARDEAAVQRLRQRKERDQ-KPFAVMVGSVDAVAGIADADAAELALLEMA- 272

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--------ETYG--HPLAIP 138
           P P+ L   + S   + P     L      +P      LI        +  G        
Sbjct: 273 PRPIVL---MTSRHRLAPAIAPGLSRIGIMLPVTPLHHLIFEALNSVHKRAGESWATVAT 329

Query: 139 SANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPG-GL 197
           SAN  G+  + + +      +     LI+      +      V      + R +R   G 
Sbjct: 330 SANPGGEPLLIDNREA-ELRLAGIADLIVTHDRDIVTRADDSVAAVVAGRTRFIRRARGY 388

Query: 198 EIETLKRAISVELEYCVDET 217
             E ++ A +V     V   
Sbjct: 389 VPEPVRLAQTVPPILAVGGA 408


>gi|170754300|ref|YP_001781384.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           B1 str. Okra]
 gi|169119512|gb|ACA43348.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           B1 str. Okra]
          Length = 812

 Score = 50.4 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +  A E +  G  +A     V G+       + ++  AI  L   K+RP   PL     D
Sbjct: 247 IYTAVELIKKGYIVA-----VKGIGGFHLVCNGKDKKAIENLRIRKERP-HKPLAIMCKD 300

Query: 67  ISMVKKHASVDPLSLHLAK 85
           + +VK+   V  L   + +
Sbjct: 301 LKIVKELCYVSKLEEQILE 319


>gi|111221266|ref|YP_712060.1| hydrogenase maturation protein hypF [Frankia alni ACN14a]
 gi|111148798|emb|CAJ60476.1| Hydrogenase maturation protein hypF [Frankia alni ACN14a]
          Length = 824

 Score = 50.4 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 10/129 (7%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA  + +   + RL   K RP   P      D++   +  +V P    L     P   
Sbjct: 244 YHLACRAEDDEGLTRLRGRKNRP-DQPFAVMARDLATAARVGTVSPAVAALLSG--PAAP 300

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI-------ETYGHPLAIPSANRSGQ 145
            ++        +  L           +P      L+             L + SANRSG+
Sbjct: 301 IVLTGRAPGAPLSALVAPGSPLVGLLLPYTPLHHLLFAPAPGGGPPPRLLVMTSANRSGE 360

Query: 146 ISITNVKHI 154
               + +  
Sbjct: 361 PICFDDREA 369


>gi|121708723|ref|XP_001272227.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
 gi|119400375|gb|EAW10801.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
          Length = 242

 Score = 50.1 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 80/220 (36%), Gaps = 27/220 (12%)

Query: 4   MSITDSNALRKACEFLDAGLPIAIPTETV-YGLAVDSRNPTAIRRLYEIKKRPAMN--PL 60
           MS   S   ++  + L  G    IP+ +V YG+   + +P A+ R+Y +K+R       +
Sbjct: 1   MSPNISTDAQRVLDILTNGGIAIIPS-SVGYGIV--ATDPCALARIYTVKQRAPHKRHAI 57

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTA---NLKTACF 117
           I        +    S          +    PL ++    +   +     A   +  T   
Sbjct: 58  IGSYPLHRALHLLPSEKQELTRALTVTLDLPLGIIAPYRADHPLLRNLDAETLSQSTVGH 117

Query: 118 RVP-----CGFTKKLIE---TYGHPLAIPSANRSGQISITNVKHILSSSICKE-IPLIID 168
            V        F ++L+      G  +   SAN SGQ   T           +    +++D
Sbjct: 118 TVAMLVNGGPFQEELVRLATAAGKLVLGSSANISGQ--GTKAVVEEIEEEVRRAADVVVD 175

Query: 169 GGISKIGLE---STIVNVQCEKKVRILRPGGLEIETLKRA 205
            G  + G     ST+V+V    K+ ++R G    E ++  
Sbjct: 176 YGRVRYGKPRASSTMVDV---GKMALVRFGAC-YEVIRDV 211


>gi|240171471|ref|ZP_04750130.1| hydrogenase maturation factor, HypF [Mycobacterium kansasii ATCC
           12478]
          Length = 790

 Score = 50.1 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 22/171 (12%)

Query: 11  ALRKACEFLDAGLPIAIPTETVYGLA----VDSRNPTAIRR-LYEIKKRPAMNPLICHVS 65
           AL      L AG  +AI      G+       + +  A+ R L   K R A  P    V 
Sbjct: 221 ALAATQRALAAGAVVAIK-----GIGGYHLACAVDDDAVVRSLRSRKARGA-KPFAMLVR 274

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
           D+ + +++A VD     +     P    ++L    T  +              +P     
Sbjct: 275 DLDVARRYAYVDDTEATVLSG--PARPIVLLRRRDTAAVADSVAPGSPLLGLMLPYSPIH 332

Query: 126 KLIETYG----HPL----AIPSANRSGQISITNVKHILSSSICKEIPLIID 168
            L+         P+     + SANRS +             +      ++D
Sbjct: 333 HLLLAPVPGGRGPVPDALVLTSANRSDEPICFTDADAAR-RLSPLCDAVLD 382


>gi|47208459|emb|CAF93771.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 68

 Score = 50.1 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 130 TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI--SKIGLESTIVNVQCEK 187
             G PLA+ SAN S   S   V       +  ++ +++DGG    +  L ST+V++    
Sbjct: 2   MCGEPLALTSANISSHTSTVAVHE--FQELWPKLSVVVDGGPIRGQSRLGSTVVDLSTPG 59

Query: 188 KVRILRPG 195
           K RI+R G
Sbjct: 60  KYRIIRNG 67


>gi|114706042|ref|ZP_01438945.1| hypothetical protein FP2506_16289 [Fulvimarina pelagi HTCC2506]
 gi|114538888|gb|EAU42009.1| hypothetical protein FP2506_16289 [Fulvimarina pelagi HTCC2506]
          Length = 261

 Score = 50.1 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 18/166 (10%)

Query: 17  EFL-DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
           + L   G  I  PT+  Y + V   +   + R ++ K R    P +     +  +K  A 
Sbjct: 20  DILTRGGGMIVSPTKVGYIIMVS--DKGGLERKFDAKVRKRNKPGVVLCGSMEELKSLAE 77

Query: 76  VDPLSLHLAKLFWPGPLTL--VLDLL-------STTDIHPLSTANLKTACFRV-----PC 121
           ++P      +  W   + L  +L                       +T+CF +       
Sbjct: 78  MNPEIEAFYQAHWDRNILLGCILPWKKEAISKIPDDGSRDFVMDGRETSCFVIRFGTPSE 137

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              + L   +G      SAN SG+ +   V+  +   I  E  LII
Sbjct: 138 QLAEALWRDHGKLAFASSANPSGKGNRGLVEG-IGDRIEAEADLII 182


>gi|126434709|ref|YP_001070400.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. JLS]
 gi|126234509|gb|ABN97909.1| (NiFe) hydrogenase maturation protein HypF [Mycobacterium sp. JLS]
          Length = 752

 Score = 49.7 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 25/149 (16%)

Query: 21  AGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHAS 75
            G  +A     V     Y LA D+ N TA+  L   K+R    P    V D +   + A 
Sbjct: 207 DGGVVA-----VKGIGGYHLACDAENNTAVAELRRRKQRG-DKPFAVMVPDAAAAGRIAV 260

Query: 76  VDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP 134
           +D ++ H+     P  P+ L      TT    ++  N       +       L+  +G P
Sbjct: 261 LDEVAQHVLGG--PQRPIVLAPRRTPTTVAAAVAPGNPD-LGVLLAYSPLHTLL--FGLP 315

Query: 135 --------LAIPSANRSGQISITNVKHIL 155
                   L + S N +G+         +
Sbjct: 316 GDEPGPQVLVMTSGNLAGEPLCYADDDAV 344


>gi|38637737|ref|NP_942711.1| HypF3 [Ralstonia eutropha H16]
 gi|32527075|gb|AAP85825.1| HypF3 [Ralstonia eutropha H16]
          Length = 796

 Score = 49.7 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
             +A+R A   L  G  +AI      G+       D+ NP A+ RL +  KR    P   
Sbjct: 195 PDDAIRAAWALLRDGGIVAIK-----GIGGFQLACDACNPVAVARLRQR-KRRERKPFAL 248

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS---TTDIHPLSTANLKTACFRV 119
              D++++++++        L +   P    +++   S      + P     +    F +
Sbjct: 249 MARDLAVIRQYSEPTAAECGLLQS--PAAPIVIVQTRSDRQGAPLAPDVAPGIAALGFML 306

Query: 120 PCGFTKKLIET-YGHPLAIPSANRSGQISIT 149
           P      L+      P+ + S N S +   T
Sbjct: 307 PGTPLHWLLMAMADRPIVLTSGNASDEPQCT 337


>gi|300919258|ref|ZP_07135779.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           115-1]
 gi|300413650|gb|EFJ96960.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli MS
           115-1]
          Length = 766

 Score = 49.7 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P ++    L  P    +
Sbjct: 242 LACDARNSNAVATLRARKHRPA-KPLAVML-------LVADGLPDAVRQL-LTTPAAPIV 292

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++       L      +P       L++    PL + S N SG+    + + 
Sbjct: 293 LVDKKYVPELCDDIAPGLNEVGAMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQ 352

Query: 154 ILSS 157
            L+ 
Sbjct: 353 ALAD 356


>gi|158316617|ref|YP_001509125.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EAN1pec]
 gi|158112022|gb|ABW14219.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. EAN1pec]
          Length = 795

 Score = 49.7 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 34/122 (27%), Gaps = 11/122 (9%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA  + +  A+  L   K RP   P    V D++   + A +      L       P+ L
Sbjct: 247 LACGADDSRAVELLRARKGRP-DRPFAVMVRDLATAAEMADLSAAEAELLTSTA-APIVL 304

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET--------YGHPLAIPSANRSGQI 146
                    +              +P      L+              L + S NRSG  
Sbjct: 305 A-RRRPGAPLSDRVAPGSPLVGLLLPYTPVHHLLFAPVPGGGPPPPRALVMTSGNRSGDP 363

Query: 147 SI 148
             
Sbjct: 364 IC 365


>gi|148273644|ref|YP_001223205.1| hypothetical protein CMM_2461 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831574|emb|CAN02542.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 260

 Score = 49.7 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 17/169 (10%)

Query: 13  RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
            +A + L+A G  +   T+  Y L     + T + R ++ K+R    P +   + I  ++
Sbjct: 16  ERAAQALEAPGGLVVAATKVGYILMT--TDGTGLERKFDAKQRNRDKPGVVLCTSIEQLQ 73

Query: 72  KHASVDPLSLHLAKLFWPGPL---TLVLDLLSTTDIHPLSTAN------LKTACFRV--- 119
           + A ++   L   +  W   +    ++        + P   A         T+CF +   
Sbjct: 74  ELAVLNDEILAFYQEHWDADVLLGCILPWREDAKHLIPDEVAGQLAMDRRGTSCFVIRFG 133

Query: 120 -PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            P     + +          SAN SG+ +   V+  +   I ++  +I+
Sbjct: 134 RPAEQLAERLWESRRLSFASSANPSGKGNRGRVEG-IGERIEQQADVIV 181


>gi|15004849|ref|NP_149309.1| hypothetical protein CA_P0146 [Clostridium acetobutylicum ATCC 824]
 gi|14994461|gb|AAK76891.1|AE001438_144 HypF homolog [Clostridium acetobutylicum ATCC 824]
          Length = 477

 Score = 49.7 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTET--VYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           +I   N + KA + L +   +AI  +T   Y L  + ++  AI  L   K R    P   
Sbjct: 48  AINSLNIIEKAYKLLKSANILAIK-DTGGFY-LICNGKSRAAINTLRRRKMR-QSKPFAV 104

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            + DI  V++   V      + +     P+ ++LD   + ++    + NLK+    +P  
Sbjct: 105 MMKDIYTVREFCEVHSEEKKVLESS-ERPI-VILDKKPSLNLPNNISPNLKSIGVMLPFS 162

Query: 123 FTKKLIET 130
              +L+  
Sbjct: 163 PISRLMLQ 170


>gi|83376058|gb|ABC17839.1| HypF [Bradyrhizobium sp. UPM1029]
          Length = 752

 Score = 49.3 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y L  D+R+  A++RL + K+R    P    V  +  V   A  D  +        P P+
Sbjct: 219 YQLVCDARDEAAVQRLRQRKQRGQ-KPFAVMVGSVEAVAGIADAD-AAELALLETSPRPI 276

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI---ETYGHPLA-------IPSANR 142
            L   L S   + P     L      +P      LI       HPLA         SAN 
Sbjct: 277 VL---LTSRHRLSPAIAPELARIGIALPVTPLLHLIFEALDAAHPLAGESWAIVATSANP 333

Query: 143 SGQISITNVKHILSSSICKEIPLII 167
            G+  + + +      +     LII
Sbjct: 334 GGEPLLIDNREA-ELRLAGIADLII 357


>gi|13508101|ref|NP_110050.1| HemK family methylase [Mycoplasma pneumoniae M129]
 gi|2496353|sp|P75419|Y362_MYCPN RecName: Full=Uncharacterized protein MG259 homolog
 gi|1674165|gb|AAB96122.1| hemk family protein [Mycoplasma pneumoniae M129]
 gi|301633681|gb|ADK87235.1| methyltransferase, HemK family [Mycoplasma pneumoniae FH]
          Length = 453

 Score = 49.3 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLA--VDSRNPTAIRRLYEIKKRPAMNPL 60
           ++ I  +  ++     LD G+   IPT+T  GL            + L  IK+R      
Sbjct: 273 VLKIAQTKQIK---ALLDKGMTAIIPTDTQIGLMSYCQ-------QDLDHIKQRDPNKHY 322

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS-TTDIHPLSTANLKTACF 117
           +  ++  S + +          LAKLFWPG  T ++D  S      P     LKT   
Sbjct: 323 VQFLA-PSQINQL---PKQLQKLAKLFWPGAYTFIVDGQSYRLPNSPQLLKLLKTVGL 376


>gi|290962981|ref|YP_003494163.1| hydrogenase maturation protein [Streptomyces scabiei 87.22]
 gi|260652507|emb|CBG75640.1| Putative hydrogenase maturation protein [Streptomyces scabiei
           87.22]
          Length = 797

 Score = 49.3 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 57/196 (29%), Gaps = 21/196 (10%)

Query: 15  ACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISM 69
           A   L  G  +A     V     Y LA D+ NP A+  L   K R    P          
Sbjct: 223 ARALLARGAILA-----VKGLGGYHLACDATNPAAVALLRRRKARG-DKPFAVMARTTDD 276

Query: 70  VKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP---LSTANLKTACFRVP----CG 122
           V+    +      L +     P+ LV  L  T                    +P      
Sbjct: 277 VRHLVRLSAEERGLLEDAA-RPVVLVRRLPDTPGEPRPAEAVAPGSPDLGLMLPYTPLHH 335

Query: 123 FTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               L      P  L + S N SG+  +T+    L          +       +  + ++
Sbjct: 336 LLLGLPGDPDGPRLLVMTSGNVSGEPIVTDDTEALERLAHLADAWLTHDRPIHVPCDDSV 395

Query: 181 VNVQCEKKVRILRPGG 196
           V V   + + I R  G
Sbjct: 396 VRVCDGQPLVIRRSRG 411


>gi|296137508|ref|YP_003644750.1| (NiFe) hydrogenase maturation protein HypF [Thiomonas intermedia
           K12]
 gi|295797630|gb|ADG32420.1| (NiFe) hydrogenase maturation protein HypF [Thiomonas intermedia
           K12]
          Length = 763

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 96/298 (32%), Gaps = 46/298 (15%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A + L AG  +AI      G+      VD+    A+ RL   K+RP   PL    
Sbjct: 188 DPIATAVDLLRAGRILAIK-----GIGSFHLVVDATAADAVARLRARKRRP-HKPLALMA 241

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            D+ +V+++A++            P    ++L+      +      + +   F +P    
Sbjct: 242 RDLDVVRRYAALTSDDERALSG--PAAPVVLLEATEPHALPYAIAPDTRLLGFMLPMSPL 299

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L+ ++  PL   S N SG     +    L   +       +            I+N 
Sbjct: 300 HHLLLASFDTPLVFTSGNASGAPPCIDNAEAL-DRLDDIADAYLLHDRP-------ILNR 351

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHV 243
             +    +LR     ++ L+R+                +PG L     P       A  V
Sbjct: 352 LDDS---VLRRIAGTLQPLRRSRGY-------------APGAL-----PLPHGFGDAPAV 390

Query: 244 NPREALIRFGNVPIKNIENAIISL--NLSKTGKLKEAAFNLFNYMKIADDSGASSIAF 299
               A ++     +      +     +L  T    EAA  L   +    D     IA 
Sbjct: 391 TALGAELKNTACLLAGGRAILSQHFGDLGGTSAAAEAARGL-ERLSQLFDHDPDIIAV 447


>gi|260662047|ref|ZP_05862943.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
 gi|260553430|gb|EEX26322.1| conserved hypothetical protein [Lactobacillus fermentum 28-3-CHN]
          Length = 257

 Score = 48.9 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 17/165 (10%)

Query: 20  DAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPL 79
             G  I  PT+  Y +     +   + R ++ K+R    P +     +  +++ A + P 
Sbjct: 21  QDGKMIVSPTKVGYIIMT--TDKAGLERKFDAKQRNRNKPGVVLCGSMEQLEELAEMTPK 78

Query: 80  SLHLAKLFWPGP--LTLVLDLLSTT-------DIHPLSTANLKTACFRV-----PCGFTK 125
              L +  W     L  +L                 L T    T+CF +           
Sbjct: 79  IRDLYQTHWDQDVLLGCILPWKQKAREKYLGDGREELMTDRRGTSCFVIRYGTPSEQLAD 138

Query: 126 KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
              +     +   SAN SG+ +   V   +   I     L+I+  
Sbjct: 139 YFWKKEHKMIYASSANPSGKGNRGKVAG-IGDRIENAADLVIEAD 182


>gi|218661955|ref|ZP_03517885.1| (NiFe) hydrogenase maturation protein HypF [Rhizobium etli IE4771]
          Length = 432

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           + +    L +G  +A+      G+       D+RN  AI  L   K R    P    V D
Sbjct: 199 VAEVAARLASGKIVALK-----GIGGFHLLCDARNNAAIGLLRLRKSRHQ-KPFAVMVRD 252

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           I   ++ A +      L  +    P+ LV  L   +    L   NL      +       
Sbjct: 253 IEAARRLARLTATEEALL-MSAAAPIVLVEPLAGQS--FDLIAPNLARIGIMLAYAPVHH 309

Query: 127 LI-------ETYGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
           L+        ++G P L   SAN S +  I +        + +   LI+
Sbjct: 310 LLFDALVTPASHGPPALVATSANPSEEPLIADNADA-ERRLGEIADLIV 357


>gi|167627035|ref|YP_001677535.1| hydrogenase maturation protein HypF [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597036|gb|ABZ87034.1| hydrogenase maturation protein HypF [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 751

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 29/216 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++  +  + + AG  IAI ++  + L VD+ N  A+ +L   K RP   P      +  
Sbjct: 189 SHSFAEISQAIRAGKIIAIKSQNGFKLVVDATNTEAVEKLRRRKHRP-NKPFALMALNTQ 247

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC------- 121
            +++H +               P+ ++L   ST+ I      ++    F +P        
Sbjct: 248 SIQEHFAEVTTQQDELLNTTIRPI-VLLKRHSTSTISSSIAPHINQLGFMLPTTGSDYIL 306

Query: 122 --------GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
                     +  L E Y   L + SAN SG+  I N        +     LI+      
Sbjct: 307 FYHLLNQPNSSSWLNEAYNLALIVTSANISGESIIANNDEA-HEKLKDIADLIVTDNR-D 364

Query: 174 IGLES------TIVNVQCEKKVRILRPGGLEIETLK 203
           I ++S      T+++    K + I R  GL  ++++
Sbjct: 365 IAIKSDDSVFHTVID----KNLPIRRSRGLVPQSIQ 396


>gi|29833917|ref|NP_828551.1| [NiFe] hydrogenase maturation protein [Streptomyces avermitilis
           MA-4680]
 gi|29611042|dbj|BAC75086.1| putative [NiFe] hydrogenase maturation protein [Streptomyces
           avermitilis MA-4680]
          Length = 788

 Score = 48.5 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 30/212 (14%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           S+  ++ + +A   L  G  +A     V     Y LA D+ +P A+  L   K R    P
Sbjct: 202 SVAGADPVTEARTLLARGAILA-----VKGLGGYHLACDASDPAAVALLRRRKARG-DKP 255

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP--------LSTAN 111
                     ++    + P    L +    G   +VL    T   +P             
Sbjct: 256 FAVMARSADDIEHLVRLGPEERSLLEG---GTRPVVLLRRRTDPSYPAGAPRPAEAVAPG 312

Query: 112 LKTACFRVP----CGFTKKLIETYGHP--LAIPSANRSGQISITNVKHILSSSICKEIP- 164
                  +P          L      P  L + S N +G+  +T+    L   +      
Sbjct: 313 SPDLGVMLPYTPLHHLLLGLPGDAEGPRLLVMTSGNVAGEPIVTDDAEAL-ERLAPLADA 371

Query: 165 LIIDGGISKIGLESTIVNVQCEKKVRILRPGG 196
            +      ++  + ++V V   K + I R  G
Sbjct: 372 WLTHDRPIQVPCDDSVVRVSDGKPLMIRRARG 403


>gi|332296266|ref|YP_004438189.1| Acylphosphatase [Thermodesulfobium narugense DSM 14796]
 gi|332179369|gb|AEE15058.1| Acylphosphatase [Thermodesulfobium narugense DSM 14796]
          Length = 759

 Score = 48.1 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + +++    L  G  IAI      G     LAVD++N  A+  L + K+RP   P    
Sbjct: 202 DDVVQETYNLLMKGKIIAIK-----GVGGFHLAVDAKNDEAVLELRKRKRRP-FKPFALM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLV-LDLLSTTDIHPLSTANLKTACFRVPCG 122
            ++I  +K         L L       P+ L+    ++   I      +L      +P  
Sbjct: 256 -ANIETIKDFLYTTKKELELLTS-RARPIVLLKQKEIALEKISKYIAPHLTYIGIMLPYT 313

Query: 123 FTKKLIETYGHPLAI--PSANRSGQISITNVKHILSSSICKEIPLII 167
             + L+   G  + +   SAN S +  +     +    +C      +
Sbjct: 314 PFQYLLFDKGKSMVLVMTSANLSDEPIVYKD-DVAFEKLCNIADYFV 359


>gi|183981875|ref|YP_001850166.1| hydrogenase maturation factor, HypF [Mycobacterium marinum M]
 gi|183175201|gb|ACC40311.1| hydrogenase maturation factor, HypF [Mycobacterium marinum M]
          Length = 796

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 16/146 (10%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA    +   +  L   K R A  P    V D+ + +++A +D            GP 
Sbjct: 239 YHLACAVDDDAVVGVLRSCKSRGA-KPFAILVRDLDVARRYAFIDDAEA----AVLSGPA 293

Query: 93  --TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG--------HPLAIPSANR 142
              ++L       +     +        +P      L+              L + SANR
Sbjct: 294 RPIVLLRRRPDAPVADAVASGSPLLGLMLPYSPIHHLLLAPVPGADAAAPEALVLTSANR 353

Query: 143 SGQISITNVKHILSSSICKEIPLIID 168
           S +          +  +      ++D
Sbjct: 354 SDEPICFTESDA-AERLSMLCDAVLD 378


>gi|111221826|ref|YP_712620.1| [NiFe] hydrogenase maturation protein HypF [Frankia alni ACN14a]
 gi|111149358|emb|CAJ61046.1| [NiFe] hydrogenase maturation protein HypF [Frankia alni ACN14a]
          Length = 793

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAK 85
           Y LA  + +  A+  L   K+R    P    V+D++  ++ A VD     L  
Sbjct: 221 YHLACLATDEAAVATLRRRKRRG-DKPFAVMVADLTAARRLAQVDQAEAALLA 272


>gi|254498963|ref|ZP_05111666.1| hydrogenase maturation protein HypF [Legionella drancourtii LLAP12]
 gi|254351821|gb|EET10653.1| hydrogenase maturation protein HypF [Legionella drancourtii LLAP12]
          Length = 744

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +    + +  G  IA+      GL       D+RN   + +L E K R A  PL   V++
Sbjct: 190 VENIAQRILQGEIIALK-----GLGGYQLICDARNEITLLKLRERKNR-ATKPLALMVAN 243

Query: 67  ISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
               ++  ++   +  L +   P  P+ L+      +         L      +P     
Sbjct: 244 SKSAEQIVAISEQAQILLER--PARPIVLLQKKNGVSRSIDKIAPGLSHLGVMLPYTPLH 301

Query: 126 KLI 128
            L+
Sbjct: 302 YLL 304


>gi|182416319|ref|YP_001821385.1| (NiFe) hydrogenase maturation protein HypF [Opitutus terrae PB90-1]
 gi|177843533|gb|ACB77785.1| (NiFe) hydrogenase maturation protein HypF [Opitutus terrae PB90-1]
          Length = 788

 Score = 47.7 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 59/184 (32%), Gaps = 14/184 (7%)

Query: 19  LDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           L  G  +A     V G+       D  N TA+  L   K R    PL      ++ V++ 
Sbjct: 239 LLHGNIVA-----VKGIGGFHLLADGTNETAVAELRRRKHR-EEKPLAVMFPSLAAVREM 292

Query: 74  ASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGH 133
           A +              P+ LV           ++  N     F       K L++    
Sbjct: 293 AELSEEEERQLTSAA-APIVLVRRRPGAALAVSIAPGNPCVGAFLPYTPLHKLLLDACAR 351

Query: 134 PLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIG-LESTIVNVQCEKKVRIL 192
           PL   S N + +   T         + +   L +    +    ++ +++ V  +  V + 
Sbjct: 352 PLVATSGNLAEEPLCTGNVEA-RERLGRIADLFLTHNRAIARPIDDSVIRVARDGPVLLR 410

Query: 193 RPGG 196
           R  G
Sbjct: 411 RARG 414


>gi|118469158|ref|YP_886625.1| [NiFe] hydrogenase maturation protein HypF [Mycobacterium smegmatis
           str. MC2 155]
 gi|118170445|gb|ABK71341.1| [NiFe] hydrogenase maturation protein HypF [Mycobacterium smegmatis
           str. MC2 155]
          Length = 762

 Score = 47.7 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 12/168 (7%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA  + + T +  L   K RPA  P    V+D+   ++ A +   +          P+ L
Sbjct: 224 LACVATDTTTVAELRRRKNRPA-KPFAVMVADLGAARRIADISAAAAAELSSPA-APIVL 281

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAI--PSANRSGQISITNVK 152
           V     T  +       L+     +       L+     P+ +   SAN  G   +   +
Sbjct: 282 VPGRDDT--VRDAVAPGLRDVGVMLAYSPVHHLLFDRLGPVVLVMTSANAGGSPIVYRDE 339

Query: 153 HILSSSICKEIPLII--DGGISKIGLES--TIVNVQCEKKVRILRPGG 196
            +    I      ++  D  I     +S  T+ +      +R  R   
Sbjct: 340 DL--HWIDGLADAVLSHDRPIHVPCEDSVLTVTDDGHTVPIRRSRGFA 385


>gi|269128773|ref|YP_003302143.1| (NiFe) hydrogenase maturation protein HypF [Thermomonospora curvata
           DSM 43183]
 gi|268313731|gb|ACZ00106.1| (NiFe) hydrogenase maturation protein HypF [Thermomonospora curvata
           DSM 43183]
          Length = 774

 Score = 47.7 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 18/195 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + +  A   L  G  +AI      GL        +    A+  L   K R    P     
Sbjct: 220 DPIVAAARRLHDGKILAIK-----GLGGYHLAVRADLERAVAALRARKHR-EDKPFAIMA 273

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPL--TLVLDLLSTTDIHPLSTANLKTACFRVP-C 121
           +D++  +    ++  +    +    GP    ++L       +        +     +P  
Sbjct: 274 ADLAAARTLVRLEEGA----ERALTGPARPIVLLPRRVDAPVAESVAPGARELGVMLPYT 329

Query: 122 GFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIV 181
                L    G P  + S N S +      +  L          ++     ++  + ++V
Sbjct: 330 PLHHLLARRLGRPFVLTSGNLSDEPIAYRDEDALQRLAPVADAFLVHDRPIQVRTDDSVV 389

Query: 182 NVQCEKKVRILRPGG 196
            +   + + + R  G
Sbjct: 390 RLFRGRVLPVRRSRG 404


>gi|297619752|ref|YP_003707857.1| (NiFe) hydrogenase maturation protein HypF [Methanococcus voltae
           A3]
 gi|297378729|gb|ADI36884.1| (NiFe) hydrogenase maturation protein HypF [Methanococcus voltae
           A3]
          Length = 830

 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 26/207 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKR--PAMNPLI 61
            +A++KA E L+ G  +AI      G+       D+ N  A   + E++KR         
Sbjct: 216 ESAIKKAVELLEDGKILAIK-----GIGGTHLVCDANNDDA---ILELRKRLNRPTQAFA 267

Query: 62  CHVSDIS--MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLST--TDIHPLSTANLKTACF 117
              ++    +  K   ++  +L+  +     P+ + L             + +NL T   
Sbjct: 268 IMSTEEKYPLFSKFTKIEEEALNSYRR----PI-VALKKKENGYNKYISENISNLDTVGV 322

Query: 118 RVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL- 176
            +P      L+        + SAN  G         I+  S+       +      +   
Sbjct: 323 MLPYSGLHYLLFGKCTAYVMTSANLPGLPMAITNDKII-ESLKDIADYFLLHNRDIVNRC 381

Query: 177 ESTIVNVQCEKKVRILRPGGLEIETLK 203
           + +++ +   + + + R  G   E ++
Sbjct: 382 DDSVLKLISNRMMILRRSRGYAPEPIE 408


>gi|238788873|ref|ZP_04632663.1| Ribosomal modification protein RimN [Yersinia frederiksenii ATCC
           33641]
 gi|238722900|gb|EEQ14550.1| Ribosomal modification protein RimN [Yersinia frederiksenii ATCC
           33641]
          Length = 73

 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTI 180
               ++L   YG PL   SAN SGQ     V+ +        +P ++ G +      S I
Sbjct: 4   HPLVQQLCLQYGKPLVSTSANLSGQEPCRTVEEV-RMQFGPSLP-VLVGQVGGRLNPSEI 61

Query: 181 VNVQCEKKVR 190
            +    K+ R
Sbjct: 62  RDALTGKQFR 71


>gi|34558425|ref|NP_908240.1| hypothetical protein WS2146 [Wolinella succinogenes DSM 1740]
 gi|34484144|emb|CAE11140.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 147

 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 34/158 (21%)

Query: 29  TETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
           T+T  GL   S++P    RL  +K RP+  P++  +  +S +K+ + V  L  +L +   
Sbjct: 11  TDTTVGL--LSQDPH---RLAALKSRPSQKPILLTLDSLSALKRFSRVPLLFRNLVRR-- 63

Query: 89  PGPLTLVLDLLSTTDIHPLSTANLKTACFRV---PCGFTKKLIETYGHPLAIPSANRSGQ 145
                       ++ ++P        A  RV   P    ++ +E +G+ L   SAN SG 
Sbjct: 64  ---------SNKSSFVYPNG------AGIRVVKEPRH--RRFLERFGY-LYSTSANPSGG 105

Query: 146 ISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
           +            +     ++ + G+ + G  S I  +
Sbjct: 106 VFSLEFGERACDIM-----VLDEAGLCE-GQPSKIWRL 137


>gi|290953762|ref|ZP_06558383.1| transposase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312885|ref|ZP_06803611.1| transposase [Francisella tularensis subsp. holarctica URFT1]
          Length = 86

 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 115 ACFRVPCGFTKKLIET-YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
              RV   +  + I    G PL I S    G   +      + S I   +  +++     
Sbjct: 1   VGIRVSEHYVPRAISAEIGEPLVISSFIVPGHQHVVTDCDEVDSQIMNYLDAVVESDYCG 60

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIE 200
             L +T+V +  E   +ILR G  EI+
Sbjct: 61  YDL-TTVVELL-ELPYQILRQGAGEID 85


>gi|213616379|ref|ZP_03372205.1| hydrogenase maturation protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 245

 Score = 47.4 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 10/118 (8%)

Query: 41  NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLS 100
           N  A+  L   K RPA  PL   +     +       P +   + L  P    +++D   
Sbjct: 1   NDNAVAMLRARKHRPA-KPLAVMLPTAQTL-------PTAAR-SLLTTPAAPIVLVDKQY 51

Query: 101 TTDIHPLSTANLKTACFRVPCGFTKK-LIETYGHPLAIPSANRSGQISITNVKHILSS 157
              +       L      +P    +  L++   +PL + S N SG+      +  L  
Sbjct: 52  VPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNYPLVMTSGNLSGKPPAITNEQALDD 109


>gi|323159864|gb|EFZ45835.1| [NiFe] hydrogenase maturation protein HypF [Escherichia coli
           E128010]
          Length = 516

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L   K RPA  PL   +         A   P +     L  P    +
Sbjct: 210 LACDARNSNAVATLRARKHRPA-KPLAVML-------PVADGLPDAARQL-LTTPAAPIV 260

Query: 95  VLDLLSTTDIHPLSTANLKTACFRVPCGF-TKKLIETYGHPLAIPSANRSGQISITNVKH 153
           ++D     ++      +L      +P       L++     L + S N SG+    + + 
Sbjct: 261 LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCLLVMTSGNLSGKPPAISNEQ 320

Query: 154 ILSS 157
            L+ 
Sbjct: 321 ALAD 324


>gi|239614287|gb|EEQ91274.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
          Length = 250

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A   L +G  I  PT+  Y L         I+R++  K R   +  I  +      ++
Sbjct: 20  QQAYGTLKSGGVIIAPTDVGYALMTS--TQEGIQRIFASKLRQPNHN-IGIIGTYRQHRE 76

Query: 73  HASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRVP 120
              +      + ++     G +  ++   ++  +HP   A             T    VP
Sbjct: 77  LHVLPESKFEMTRVVTEDLGMIVGLIAKFNSHSLHPRLAALDKATFSQVTKGDTISIAVP 136

Query: 121 CG-FTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            G F ++L         G  +   SAN +GQ     V+  +  S+ + + LI+D G
Sbjct: 137 EGRFLQELGRLCDEDPQGILMFGTSANLTGQGQRFRVED-IEPSVRESVDLIVDYG 191


>gi|260893840|ref|YP_003239937.1| (NiFe) hydrogenase maturation protein HypF [Ammonifex degensii KC4]
 gi|260865981|gb|ACX53087.1| (NiFe) hydrogenase maturation protein HypF [Ammonifex degensii KC4]
          Length = 773

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 65/194 (33%), Gaps = 16/194 (8%)

Query: 17  EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           E L AG  +AI      GL       D+  P  +  L   K+RP   PL     D+ +V+
Sbjct: 221 ELLRAGKILAIK-----GLGGFHLCCDALEPRVVALLRRRKRRP-HKPLAVMARDLEVVR 274

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIET 130
           +   + P+   L     P    +VL       +       LKT    +P       L++ 
Sbjct: 275 RFCELGPVEEELLTS--PAAPIVVLKRRPEAGLPEELAPGLKTLGVMLPYTPLHLLLLQG 332

Query: 131 YGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGL-ESTIVNVQCEKKV 189
               L + S NRSG     + +      +       +      +   + ++V V      
Sbjct: 333 PLPLLVMTSGNRSGLPLCKDNERAW-EELGDIADYFLIHNRDIVNRCDDSVVAVMGGIPA 391

Query: 190 RILRPGGLEIETLK 203
              R  G   + +K
Sbjct: 392 FYRRSRGYVPQPVK 405


>gi|327356340|gb|EGE85197.1| hypothetical protein BDDG_08142 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 250

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A   L +G  I  PT+  Y L         I+R++  K R   +  I  +      ++
Sbjct: 20  QQAYGTLKSGGVIIAPTDVGYALMTS--TQEGIQRIFASKLRQPNHN-IGIIGTYRQHRE 76

Query: 73  HASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRVP 120
              +      + ++     G +  ++   ++  +HP   A             T    VP
Sbjct: 77  LHVLPESKFEMTRVVTEDLGMIVGLIAKFNSHSLHPRLAALDKATFSQVTKGDTISIAVP 136

Query: 121 CG-FTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            G F ++L         G  +   SAN +GQ     V+  +  S+ + + LI+D G
Sbjct: 137 EGRFLQELGRLCDEDPQGILMFGTSANLTGQGQRFRVED-IEPSVRESVDLIVDYG 191


>gi|186474327|ref|YP_001863298.1| SUA5/yciO/yrdC domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184198286|gb|ACC76248.1| SUA5/yciO/yrdC domain [Burkholderia phymatum STM815]
          Length = 769

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 23/175 (13%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETV-----YGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           S +  + + +A   +  G  +A     V     + L   + NP A+ RL E K+RP   P
Sbjct: 203 SGSPMDPVARAWATIARGEIVA-----VKRLDGFQLICHATNPAAVERLRERKRRP-TKP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL------VLDLLSTTDIHPLSTANLK 113
           L   V  ++   +   +   S          P+ +      +  +L +T I  L     +
Sbjct: 257 LALLVPKVASAAQWVDLGDASNAKLLASAIRPIVVSRRLNRLGPMLPSTPIQYLLFHRAQ 316

Query: 114 TACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
                 P G T+ L E         SAN SG+  +++   +   ++      ++D
Sbjct: 317 GL----PSG-TRWLGEAQPTIRVPASANLSGEPLLSDSADV-GEALADIANAVLD 365


>gi|188590247|ref|YP_001920987.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188500528|gb|ACD53664.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 783

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            I   + LR   ++L AG  IA+      G+       D +N ++I  L + K RP   P
Sbjct: 198 KIKCDDILRITRQYLKAGRIIALK-----GIGGFNLICDGKNKSSIDVLRKRKNRP-KKP 251

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   + DI +V K+  V+     + +     P  ++L      ++              +
Sbjct: 252 LALMMRDIDVVNKYCFVNEKENEILQGS-KKP--IILLNKRENNLPQNIVFKNNKLGIVI 308

Query: 120 PCGFTKKLI 128
           P      L+
Sbjct: 309 PYSPLHVLL 317


>gi|284162330|ref|YP_003400953.1| (NiFe) hydrogenase maturation protein HypF [Archaeoglobus profundus
           DSM 5631]
 gi|284012327|gb|ADB58280.1| (NiFe) hydrogenase maturation protein HypF [Archaeoglobus profundus
           DSM 5631]
          Length = 753

 Score = 47.0 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 23/152 (15%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA----VDSRNPTAIRRLYEIK-KRPAMNPLICHV 64
           +A+ +A E +D G  +AI      G+         +   + +L + K  RP   P     
Sbjct: 195 DAIIRAAELIDEGRMVAIK-----GIGGYHIACITDDDVVFKLRD-KLGRPQ-QPFAIMA 247

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTT--DIHPLSTANLKTACFRVPCG 122
            ++ +V+K A V          +   P+T++          + P     L T    +P  
Sbjct: 248 RNLEVVRKVAYVSEDEEREMTSYI-RPITVLKKRNPNEFFAVAPY----LNTIGVMLPYS 302

Query: 123 FTKKLI---ETYGHPLAIPSANRSGQISITNV 151
               ++         + + SAN+ G+    + 
Sbjct: 303 PLHYILFNYLKSDF-IVMTSANKPGEPMYIDD 333


>gi|170017837|ref|YP_001728756.1| putative translation factor (SUA5) [Leuconostoc citreum KM20]
 gi|169804694|gb|ACA83312.1| Putative translation factor (SUA5) [Leuconostoc citreum KM20]
          Length = 264

 Score = 47.0 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 13 RKACEFLDA-GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
           +A   L A G  I  PT+  Y +     +   + R +  K R    P +     ++ VK
Sbjct: 19 EEAITILKAAGGMIVSPTKVGYIIMTS--DKQGLERKFSAKNRRRNKPGVVLCGSMAQVK 76

Query: 72 KHASVDPLSLHLAKLFW 88
            A + P    + +  W
Sbjct: 77 ALAQMTPEIEQMYQKHW 93


>gi|295106306|emb|CBL03849.1| Hydrogenase maturation factor [Gordonibacter pamelaeae 7-10-1-b]
          Length = 307

 Score = 46.6 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 8   DSNAL-RKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           +S+A+  +A E L AG  +A     V GL       D+ N  A+  L   +KR       
Sbjct: 236 ESDAILARAVELLCAGKILA-----VKGLGGFHLVCDANNADAVA-LLRARKRREGKAFA 289

Query: 62  CHVSDISMVKKHASVDPL 79
              +    V++   V   
Sbjct: 290 VMAATTDDVRRVCEVSDA 307


>gi|65320555|ref|ZP_00393514.1| COG0068: Hydrogenase maturation factor [Bacillus anthracis str.
           A2012]
          Length = 305

 Score = 46.6 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNP 59
           +++  N + K  + L  G  +AI      GL       D  N  A++ L + KKR    P
Sbjct: 203 NVSTDNPIEKTIDLLKKGKILAIK-----GLGGYHLVVDPMNHEAVKELRKRKKRDE-KP 256

Query: 60  LICHVSDISMVKKHASVDPLSLHLA 84
                S +  VK  A +      L 
Sbjct: 257 FALMSSQLDDVKNFAEITKNEETLL 281


>gi|237755703|ref|ZP_04584311.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium
          yellowstonense SS-5]
 gi|237692124|gb|EEP61124.1| Sua5/YciO/YrdC/YwlC family protein [Sulfurihydrogenibium
          yellowstonense SS-5]
          Length = 33

 Score = 46.6 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 19/26 (73%)

Query: 29 TETVYGLAVDSRNPTAIRRLYEIKKR 54
          T+T+YG+  ++ +  A+ ++Y IK+R
Sbjct: 5  TDTIYGILANALDREAVEKIYVIKER 30


>gi|241667634|ref|ZP_04755212.1| hydrogenase maturation protein HypF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876179|ref|ZP_05248889.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842200|gb|EET20614.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 751

 Score = 46.6 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 29/216 (13%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDIS 68
           S++  +  + + AG  I I ++  + L VD+ N  A+ +L   K RP   P      +  
Sbjct: 189 SHSFAEISQAIRAGKIIVIKSQNGFKLVVDATNTEAVEKLRRRKHRP-NKPFALMALNTQ 247

Query: 69  MVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI 128
            +++H +               P+ LV +  ST+ I       +    F +P   +  ++
Sbjct: 248 SIQEHFATVTTQQDELLNTTIRPIVLV-ERHSTSTISSSIAPRINQLGFMLPTTGSDYIL 306

Query: 129 ---------------ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISK 173
                          ET+   L + SAN SG+  I N        +     LI+      
Sbjct: 307 FYHLLNQPTGSSWLNETHDLALIVTSANISGESIIANNDEA-HEKLKDIADLIVTDNR-D 364

Query: 174 IGLES------TIVNVQCEKKVRILRPGGLEIETLK 203
           I ++S      T+++    K + I R  GL  ++++
Sbjct: 365 IAIKSDDSVFHTVID----KNLPIRRSRGLVPQSIQ 396


>gi|296271181|ref|YP_003653813.1| (NiFe) hydrogenase maturation protein HypF [Thermobispora bispora
           DSM 43833]
 gi|296093968|gb|ADG89920.1| (NiFe) hydrogenase maturation protein HypF [Thermobispora bispora
           DSM 43833]
          Length = 783

 Score = 46.6 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA  + +  A+R L E K R A         D++  ++ A + P     A L  P   
Sbjct: 240 YHLACRAADERAVRTLRERKAR-AGKAFAVMARDLATARRLAGIGPAEA--AALTGPAAP 296

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHP--------LAIPSANRSG 144
            ++L       +      +       +P      L+              L + SAN S 
Sbjct: 297 IVLLTRRPDAPVAEGVAPDNPLIGVMLPYSPLHHLLFAPVPGEAGWVPDVLVMTSANVSD 356

Query: 145 QISITNVKHI 154
           +    + +  
Sbjct: 357 EPICFDDEDA 366


>gi|257092366|ref|YP_003166007.1| (NiFe) hydrogenase maturation protein HypF [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044890|gb|ACV34078.1| (NiFe) hydrogenase maturation protein HypF [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 774

 Score = 46.2 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 67/229 (29%), Gaps = 29/229 (12%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + +  A   L  G  +AI      GL       D+RN  A+  L E K+R    P +  
Sbjct: 202 DDPIAGALALLQQGKIVAIK-----GLGGFHLACDARNAVAVAVLRERKQRDE-KPFVVM 255

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           +++     +   +      L     P  P  L+    S  +  P     L      +P  
Sbjct: 256 LANAPSAARLVQMGIGEPGLM--TLPTRPAILLRKRGSCDEALPGVAPGLAWLGVMLPYT 313

Query: 123 FTKKLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             + L+  E    P             L + SAN  G+  +      L          ++
Sbjct: 314 PLQFLLFHEAAKRPAGLGWLERSQDLALVMTSANPGGEPLVIGNSEALLRLYGIADAFLM 373

Query: 168 DGGISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
                    + ++  +       I R  G     +K  +S      V  
Sbjct: 374 HDRDIVTRCDDSVARITTGGLQFIRRARGYTPRAIKMPVSGPSVLAVGA 422


>gi|187932358|ref|YP_001886197.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum B
           str. Eklund 17B]
 gi|187720511|gb|ACD21732.1| [NiFe] hydrogenase maturation protein HypF [Clostridium botulinum B
           str. Eklund 17B]
          Length = 783

 Score = 46.2 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 14/129 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
            I   + LR   ++L  G  IA+      G+       D +N ++I  L + K RP   P
Sbjct: 198 KIKCDDVLRITRQYLKEGRIIALK-----GIGGFNLICDGKNKSSIDVLRKRKNRPQ-KP 251

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
           L   + DI +V K+  V+     + +     P  ++L      ++              +
Sbjct: 252 LALMMRDIDVVNKYCFVNEKENEILQGS-KKP--IILLNKRENNLPKNIVFKNNKLGIVL 308

Query: 120 PCGFTKKLI 128
           P      L+
Sbjct: 309 PYSPLHVLL 317


>gi|27262172|gb|AAN87367.1| hydrogenase maturation protein HypF [Heliobacillus mobilis]
          Length = 705

 Score = 46.2 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 47/158 (29%), Gaps = 24/158 (15%)

Query: 17  EFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVK 71
             +  G  IA+      GL       D RN  A+ +L   K RP    L     D+  V+
Sbjct: 212 RMIHQGSIIALK-----GLGGFHLVCDGRNDAAVAKLRRRKNRPY-KALALMARDMDTVR 265

Query: 72  KHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD-----------IHPLSTANLKTACFRVP 120
             A V      L       P+ ++       D           I        KT    +P
Sbjct: 266 SIAWVSAQEETLLTSSA-APIVILEQKNGCKDLPLGYGTDKGIIPANIAPGTKTVGLMLP 324

Query: 121 -CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSS 157
                  L +     L + S N SG   + + +  L  
Sbjct: 325 YTPMHHMLFDEQIDLLVMTSGNPSGLPLVRDNEAALDQ 362


>gi|134080391|emb|CAK46312.1| unnamed protein product [Aspergillus niger]
          Length = 245

 Score = 45.8 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 59/171 (34%), Gaps = 24/171 (14%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTA-IRRLYEIKKRPAMNPLICHVSDISMVK 71
           ++  + L  G  + IPT+  Y L     +  A +++++  K R   +  I  +       
Sbjct: 20  KQTYDTLKNGGVVIIPTDVGYAL---LTSTQAGVQQIFSAKDRREGHN-IGIIGTYKQHY 75

Query: 72  KHASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRV 119
           +   +      + ++       +  ++    T ++HP   A             T    V
Sbjct: 76  EIHVLSEAKFEMTRVLTEDMAMIVGIIAKYDTENLHPRLAALDPATLSQVTKGDTVSIAV 135

Query: 120 PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
           P G     +   G    +   + +GQ     V+  +   +   + L++D G
Sbjct: 136 PEGP---FLRELGR---LCDDDPTGQGQRFRVED-IEPKVINAVDLVVDYG 179


>gi|150017850|ref|YP_001310104.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904315|gb|ABR35148.1| (NiFe) hydrogenase maturation protein HypF [Clostridium
           beijerinckii NCIMB 8052]
          Length = 766

 Score = 45.8 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 13/125 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
            + +++    ++ G  +AI      G+       D RN  AI  L   K+R    PL   
Sbjct: 215 EDPIKETISLIEEGKILAIK-----GIGGFHLVCDGRNEQAINLLRSRKQR-KDKPLALM 268

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
             DI ++K+   +      +       P+ ++L       +         +    +P   
Sbjct: 269 AKDIGVIKEICYISDKEEEVISSN-KRPI-VILKKKYPFVLPEAIAPKQNSLGVMLPYTP 326

Query: 124 TKKLI 128
              L+
Sbjct: 327 LHYLL 331


>gi|325957990|ref|YP_004289456.1| Acylphosphatase [Methanobacterium sp. AL-21]
 gi|325329422|gb|ADZ08484.1| Acylphosphatase [Methanobacterium sp. AL-21]
          Length = 768

 Score = 45.8 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 16/171 (9%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVD----SRNPTAIRRLYEIKKRPAMN 58
           I+ I   N ++KA E +D G  +AI      G+                +   K R    
Sbjct: 195 ILKI--ENPIKKAAELIDEGKILAIK-----GIGGTHLVVKTTENGPVDILRQKLRRFNQ 247

Query: 59  PLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFR 118
           P      +I  VK  A V  +     +     P+ +VL+  S   + P  +  L      
Sbjct: 248 PFAIMSPNIETVKGFAEVSGVESDTIQSRR-RPI-VVLNKNSNYSLAPSVSPYLHNLGVM 305

Query: 119 VP-CGFTKKLIETYGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167
           +P  G    L      P  I  SAN  G+  + N + I+S  +       +
Sbjct: 306 LPYSGLHHLLFSYSTEPAYIMTSANMPGEPMLINNEEIIS-KLDGIADYFL 355


>gi|73667930|ref|YP_303945.1| hydrogenase maturation protein [Methanosarcina barkeri str. Fusaro]
 gi|72395092|gb|AAZ69365.1| hydrogenase maturation protein [Methanosarcina barkeri str. Fusaro]
          Length = 767

 Score = 45.8 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 33/223 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYG---LAVDSRNPTAIRRLYEIKKRPAM--------- 57
            A+  A + L  G  +AI     +G   +A D+R           K+ P           
Sbjct: 203 EAIIHASDLLQQGSILAIK---GFGGFHIACDAR-----------KEMPVNELRRRLRRP 248

Query: 58  -NPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P      +  + +  A ++ +       +   P+T VL     + +    T+ L    
Sbjct: 249 EQPFAVMAKNAEVAETFAELEGVGREYLTSYR-RPIT-VLPSSRESGLAESVTSGLHNIG 306

Query: 117 FRVPCGFTKKLI--ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLI-IDGGISK 173
             +P   T+ L+          + SAN  G+  +   K  L   +   +    +   +  
Sbjct: 307 VMLPYTGTQNLLFDRVPDAVYVMTSANLPGRPMVVENKEAL-EKLKGIVDYYLLHNRVIA 365

Query: 174 IGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
              + T++ V   K   I R  G   E ++    V+    V  
Sbjct: 366 NRNDDTVIRVVNGKAAFIRRSRGFVPEPVELPFEVKASIGVGA 408


>gi|330863313|emb|CBX73436.1| hypothetical protein YEW_ES20310 [Yersinia enterocolitica W22703]
          Length = 307

 Score = 45.8 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LAVD+ N  A+ RL E K RP+  PL   + D   ++   S    +  L  L  P    +
Sbjct: 227 LAVDATNAVAVARLRERKHRPS-KPLAVMLPDADWLQSCVSSADHTALLGLLRSPAAPIV 285

Query: 95  VLDLLSTTDIHPLSTANLKTAC 116
           ++     + +       L    
Sbjct: 286 LVAKQPESPLCVAVAPELPELA 307


>gi|261204349|ref|XP_002629388.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
 gi|239587173|gb|EEQ69816.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
          Length = 250

 Score = 45.4 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
           ++A   L +G  I  PT+  Y L         I+R++  K R   +  I  +      ++
Sbjct: 20  QQAYGTLKSGGVIIAPTDVGYALMTS--TQEGIQRIFASKLRQPNHN-IGIIGTYRQHRE 76

Query: 73  HASVDPLSLHLAKLFWP--GPLTLVLDLLSTTDIHPLSTA----------NLKTACFRVP 120
              +      + ++     G +  ++   ++  +HP   A             T    VP
Sbjct: 77  LHVLPESKFEMTRVVTEDLGMIVGLIAKFNSHSLHPRLAALDKATFSQVTKGDTISIAVP 136

Query: 121 CG-FTKKLIETY-----GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
            G F ++L         G  +   SAN +GQ     V+  +   + + + LI+D G
Sbjct: 137 EGRFLQELGRLCDEDPQGILMFGTSANLTGQGQRFRVED-IEPPVRESVDLIVDYG 191


>gi|220931235|ref|YP_002508143.1| (NiFe) hydrogenase maturation protein HypF [Halothermothrix orenii
           H 168]
 gi|219992545|gb|ACL69148.1| (NiFe) hydrogenase maturation protein HypF [Halothermothrix orenii
           H 168]
          Length = 751

 Score = 45.4 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 19/189 (10%)

Query: 16  CEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMV 70
            + L  G  IAI      G+       D+     I  L   K+RP   PL   ++ ++ V
Sbjct: 208 IDLLKKGNIIAIK-----GIGGFHLMCDATESDVIANLRTRKRRP-DKPLALMMNKLTTV 261

Query: 71  KKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIET 130
           +K+ +V  +   +       P  +VL       +       ++     +P      L+  
Sbjct: 262 RKYCNVGSMEEEILTGIR-RP--IVLLDKKGEKLPRNIAPGIRYYGVMLPYTPLHYLLFD 318

Query: 131 YG-HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE--STIVNVQCEK 187
            G   L   S N SG         +   ++      ++ G   +I +    ++V V   K
Sbjct: 319 KGIEVLIATSGNVSGNPLEYQNGGVF-ENLKGIADYVL-GHNREIYVPVDDSVVRVVGGK 376

Query: 188 KVRILRPGG 196
           K  I R  G
Sbjct: 377 KRVIRRARG 385


>gi|256811018|ref|YP_003128387.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus
           fervens AG86]
 gi|256794218|gb|ACV24887.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus
           fervens AG86]
          Length = 762

 Score = 45.1 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 14/164 (8%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+++A + L+ G  +AI      G+              +  L +   RP   P    
Sbjct: 201 DEAIKEAVKLLEEGKILAIK-----GIGGTHLACKVSENEPVLNLRKRLGRP-TQPFAVM 254

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGF 123
            S    V   A VD    ++       P+ ++    +         +NL T    +P   
Sbjct: 255 -SKRDYVDLFAEVDEDERNMLLSLR-RPIVVLKKSENYDKYFSKYVSNLDTIGVMLPYSG 312

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              L+        + SAN  G   + +   IL   +       +
Sbjct: 313 LHYLLFDKEIAYVMTSANLPGLPMVKDNDEILK-KLDGIADYFL 355


>gi|152990714|ref|YP_001356436.1| hydrogenase maturation protein HypF [Nitratiruptor sp. SB155-2]
 gi|151422575|dbj|BAF70079.1| hydrogenase maturation protein HypF [Nitratiruptor sp. SB155-2]
          Length = 703

 Score = 45.1 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 14/148 (9%)

Query: 10  NALRKACEFLDAGLPIAIPTETV--YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
            A+    + +  G  +AI  + V  Y L    ++     +L +IK+RP   P       I
Sbjct: 189 EAIGAVVKDILTGEIVAI--KGVGGYHLVCLPKSAY---KLRQIKRRP-KKPFALMFKSI 242

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKL 127
             +K+   ++    +L       P+ +V        I      ++      +P      L
Sbjct: 243 GKIKEVCHINEYEENLVTSK-ERPIVIV----KAKKIFADVAPDIDRLGVFLPYSPIYYL 297

Query: 128 I-ETYGHPLAIPSANRSGQISITNVKHI 154
           +      PL + SAN S +  + + ++I
Sbjct: 298 LFSLIDSPLVVTSANISDEPIVKDEENI 325


>gi|116751427|ref|YP_848114.1| (NiFe) hydrogenase maturation protein HypF [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700491|gb|ABK19679.1| (NiFe) hydrogenase maturation protein HypF [Syntrophobacter
           fumaroxidans MPOB]
          Length = 770

 Score = 45.1 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 19/169 (11%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICH 63
             A+ +A   L  G  +A     V GL       D+ N  A+ RL   K R    P    
Sbjct: 209 EAAVAEAIRRLGEGAILA-----VKGLGGFHLAVDAGNEAAVSRLRGRKIR-EDKPFAVM 262

Query: 64  VSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLST--TDIHPLSTANLKTACFRVP 120
             D+  V+    +      L     P  P+ L+         DI      + +     +P
Sbjct: 263 FPDLETVESTCRLSDREAGLLGS--PQRPIVLLERRRDAGRGDIADSVAPHNRCLGAFLP 320

Query: 121 CGFTKKLIE--TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                 L+        L + S N+S +  +   +      +     L++
Sbjct: 321 YTPLHFLLFDGAPYRALVMTSGNQSDEPIVMTNEDA-RERLRGIADLLL 368


>gi|126462906|ref|YP_001044020.1| (NiFe) hydrogenase maturation protein HypF [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104570|gb|ABN77248.1| (NiFe) hydrogenase maturation protein HypF [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 758

 Score = 45.1 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +A   L  G  +A     V GL       D+R+  A+RRL   K+RP   P     
Sbjct: 214 DPIAEAARLLARGGILA-----VKGLGGFHLACDARDKDALRRLRLRKRRP-GKPFALM- 266

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           +   M  + A        L +     P   V+ +     +       + T     P    
Sbjct: 267 ATEEMAAEIADPAEADRVLLRD----PAAPVVLVRGRGRLPEEVAPGMTTLGIMRPYTPL 322

Query: 124 TKKLIETYGHPLAIPSANRSGQIS 147
             +LIE +G PL + SANRSG   
Sbjct: 323 HHRLIEAFGGPLVMTSANRSGAPQ 346


>gi|195952426|ref|YP_002120716.1| (NiFe) hydrogenase maturation protein HypF [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932038|gb|ACG56738.1| (NiFe) hydrogenase maturation protein HypF [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 736

 Score = 45.1 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 16/152 (10%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNP 59
           +I   N      + L     IA+      GL       ++ +  A+R L E KKR +  P
Sbjct: 195 NIYKENIFELMAKDLKDSKIIALK-----GLGGFHLICNALDEKAVRTLRERKKRSS-KP 248

Query: 60  LICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRV 119
                  +  V K+       +         P+ L+      +     +   L +    +
Sbjct: 249 FGIMFKSLEEVLKYLEPKEDEIKALTSV-QKPIVLI---KRKSPYFEEACKGLSSVGAFL 304

Query: 120 P-CGFTKKLIETYGHPLAIPSANRSGQISITN 150
              G   +L +    P+   S N S      +
Sbjct: 305 AYTGIHLRLFDFIDFPIIATSGNISDTPICKD 336


>gi|729795|sp|P28156|HYPF_RHILV RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl
           phosphate-converting enzyme hypF; AltName:
           Full=[NiFe]-hydrogenase maturation factor hypF;
           Short=Hydrogenase maturation protein hypF
 gi|48734|emb|CAA37161.1| hypF [Rhizobium leguminosarum]
          Length = 759

 Score = 44.7 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 27/170 (15%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +++    L+ G  +A+      G+       D+RN  AI  L  ++K     P    V D
Sbjct: 199 IKEISARLEGGAIVALK-----GVGGFHLLCDARNDGAIG-LLRLRKAGDQKPFAVMVRD 252

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           I   ++ A     +     +    P+ LV       ++  L    L      +       
Sbjct: 253 IEAARQLAR-PNEAEEALLISPARPIVLV--AARAGELSGLIAPGLTRVGLMLAYAPVHH 309

Query: 127 LIE--------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           L+              L   SAN  G+  + +     +    + +  I D
Sbjct: 310 LLLDELSRSSPHCHAALVATSANPGGEPLVAD-----NDDAGRRLVAIAD 354


>gi|282856176|ref|ZP_06265459.1| (NiFe) hydrogenase maturation protein HypF [Pyramidobacter
           piscolens W5455]
 gi|282585935|gb|EFB91220.1| (NiFe) hydrogenase maturation protein HypF [Pyramidobacter
           piscolens W5455]
          Length = 753

 Score = 44.3 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 18/167 (10%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D  A   A   L  G  IA     V GL       D+    A+  L   +KR    P   
Sbjct: 202 DEKAFGLAIAALANGQIIA-----VKGLGGFHLACDATREEAVS-LLRRRKRRPRRPFAV 255

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
            V ++++ +K   +      L          ++L+   +  + P     L      +P  
Sbjct: 256 MVKNVAVAEKLVKLSADDKKLLTGA--RAPIILLERNDSNLLAPSVAPGLNRLGVMLPYT 313

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDG 169
               +I      L + SAN SG+  ++  +          +  I DG
Sbjct: 314 PLHHMIMEGFDALVMTSANLSGEPLVSENEEAYR-----RLAGICDG 355


>gi|2058352|emb|CAA85443.1| HYPF [Rhizobium leguminosarum]
          Length = 476

 Score = 44.3 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 27/170 (15%)

Query: 12  LRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHVSD 66
           +++    L+ G  +A+      G+       D+RN  AI  L   K R    P    V D
Sbjct: 199 IKEISARLEGGAIVALK-----GVGGFHLLCDARNDGAIGLLRLRKARDQ-KPFAVMVRD 252

Query: 67  ISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKK 126
           I   ++ A     +     +    P+ LV       ++  L    L      +       
Sbjct: 253 IEAARQLAR-PNEAEEALLISPARPIVLV--AARAGELSGLIAPGLTRVGLMLAYAPVHH 309

Query: 127 LIE--------TYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIID 168
           L+              L   SAN  G+  + +     +    + +  I D
Sbjct: 310 LLLDELSRSSPHCHAALVATSANPGGEPLVAD-----NDDAGRRLVAIAD 354


>gi|329962397|ref|ZP_08300397.1| hypothetical protein HMPREF9446_01984 [Bacteroides fluxus YIT
           12057]
 gi|328529953|gb|EGF56841.1| hypothetical protein HMPREF9446_01984 [Bacteroides fluxus YIT
           12057]
          Length = 67

 Score = 43.9 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 141 NRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE-STIVNVQCEKKVRILRPGGL 197
           +    I       ++       + L+IDGGI   G E ST+VN    +   + +  G 
Sbjct: 8   DEDEDIEYITDPELIDEKFGNAVDLVIDGGIG--GTEGSTVVNCTNGEPEIVRQGKGW 63


>gi|261403666|ref|YP_003247890.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus
           vulcanius M7]
 gi|261370659|gb|ACX73408.1| (NiFe) hydrogenase maturation protein HypF [Methanocaldococcus
           vulcanius M7]
          Length = 768

 Score = 43.9 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 37/212 (17%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKR--PAMNPLI 61
            +A+++A + L+ G  +AI      G+          +   +    E++KR      P  
Sbjct: 201 DDAVKEAVKLLEEGKILAIK-----GIGGTHLTCKVGDDETV---LELRKRLGRESQPFA 252

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWP-GPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              S I  +KK A ++        L  P  P+ ++    +  +      +NL T    +P
Sbjct: 253 VM-SKIEHIKKFAELEEDEKK--ALTSPRRPIVVLNKNQNYDNYFSKYVSNLDTIGVMLP 309

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHI------LSSSI---CKEIPLIIDGGI 171
                 L+        + SAN  G   + +   I      ++       + I    D   
Sbjct: 310 YSGLHYLLFDNEIAYVMTSANLPGLPMVKDNDQILKKLNNIADYFLLHNRRIVNRCDD-- 367

Query: 172 SKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
                  ++V    +  V + R  G   E +K
Sbjct: 368 -------SVVKKVGDNIVFLRRSRGYAPEPIK 392


>gi|150401899|ref|YP_001325665.1| (NiFe) hydrogenase maturation protein HypF [Methanococcus aeolicus
           Nankai-3]
 gi|150014602|gb|ABR57053.1| (NiFe) hydrogenase maturation protein HypF [Methanococcus aeolicus
           Nankai-3]
          Length = 795

 Score = 43.9 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 7   TDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLI 61
           T++NA+ +  + L  G   AI      G+       D+ N +A+  L +   RP   P  
Sbjct: 205 TNNNAIEQTVKLLKEGNIFAIK-----GIGGAHLVCDANNDSAVLELRKRLNRP-TQPFA 258

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
              +    +K  A+ D   ++L K     P+ +     +         ++L T       
Sbjct: 259 IM-AKPEYLKLFANYDNEEINLFKS-QKRPIVVFDKNKNYDKYISKFVSDLNTVGAMAQY 316

Query: 122 GFTKKLIETYGHPLA--IPSANRSGQISITNVKHILSS 157
                L+      +A  + SAN  G         I+ S
Sbjct: 317 SGIHHLLFNETEAIAYVMTSANLPGLPMAIENDKIIDS 354


>gi|145234176|ref|XP_001400459.1| expressed protein [Aspergillus niger CBS 513.88]
 gi|134057403|emb|CAK47741.1| unnamed protein product [Aspergillus niger]
          Length = 243

 Score = 43.9 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 21/148 (14%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKR--PAMNPLICHVSDISMV 70
           ++  + L  G    +PTE  YGL   + +  AI R +  K+R     + LI       + 
Sbjct: 25  QRVFDVLQLGGIAIVPTEIGYGL--LASSVEAIERAFSAKRRRPGHAHGLI---GSYELH 79

Query: 71  KKHASVDPLSLHLAKLFWPG---PLTLVLDLLSTTDIHPLSTA-------NLKTACFRVP 120
            +   ++P    + ++        L +V    +   I    T           T    V 
Sbjct: 80  HELHVLEPERFEMTRVLTHDLDMGLGIVAPYKADHPILAKFTPKTLANVVKDDTIAMFVG 139

Query: 121 CG-FTKKLIE---TYGHPLAIPSANRSG 144
            G   +++       G  +   SAN SG
Sbjct: 140 GGSLLREICRLNYEAGQVMVGSSANLSG 167


>gi|284052977|ref|ZP_06383187.1| (NiFe) hydrogenase maturation protein HypF [Arthrospira platensis
           str. Paraca]
          Length = 286

 Score = 43.9 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 11/72 (15%)

Query: 19  LDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKH 73
           +  G  +AI      GL       D+ N  A+ +L   K RP   P       I  + + 
Sbjct: 220 IGRGQIVAIK-----GLGGFQLLVDATNAAAVEQLRIRKHRP-HKPFAVMYRSIQQISQV 273

Query: 74  ASVDPLSLHLAK 85
             +        +
Sbjct: 274 CDMSAAEEQWLR 285


>gi|226364130|ref|YP_002781912.1| hydrogenase maturation protein HypF [Rhodococcus opacus B4]
 gi|226242619|dbj|BAH52967.1| hydrogenase maturation protein HypF [Rhodococcus opacus B4]
          Length = 768

 Score = 43.9 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 49/160 (30%), Gaps = 21/160 (13%)

Query: 8   DSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLIC 62
           D   L    + L  G  +A     V GL       D+ +  A+  L   K RP   P   
Sbjct: 200 DDAVLTAVQQALRDGRIVA-----VKGLGGFHLVCDAADADAVATLRARKHRP-DKPFAV 253

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
             +D+    +   +      L +   P    L+L   +T  +       +      +P  
Sbjct: 254 MTADLPAAAELCDISESESALLRH--PARPILLLRKRNTAPVADGIAPGIDDLGVMLPYT 311

Query: 123 FTKKLI--ETYG------HPLAIPSANRSGQISITNVKHI 154
               L+   T G        L + S N SG+    +    
Sbjct: 312 PLHHLLFTRTPGSDIDPPRVLVMTSGNLSGEPLCFDNDDA 351


>gi|39995415|ref|NP_951366.1| hydrogenase maturation protein HypF [Geobacter sulfurreducens PCA]
 gi|39982178|gb|AAR33639.1| hydrogenase maturation protein HypF [Geobacter sulfurreducens PCA]
 gi|298504415|gb|ADI83138.1| hydrogenase maturation protein HypF [Geobacter sulfurreducens
           KN400]
          Length = 763

 Score = 43.5 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 66/213 (30%), Gaps = 14/213 (6%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +  E L  G  +AI      GL       D+ N  A+  L   K R    P     
Sbjct: 199 DPVDQTVELLTEGKIVAIK-----GLGGYHLAVDAANDAAVAELRRRKHRDE-KPFAVMA 252

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
            D+  V + A VD +   L     P    ++L    +T +              +P    
Sbjct: 253 RDMEAVARFALVDSVEARLLTG--PEHPIVLLRKRPSTILSGRVAPANGYIGTMLPYTPL 310

Query: 124 TKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNV 183
              L+E     L + S N S +         +          ++     +  ++ +++ V
Sbjct: 311 HHLLLEERFAALVMTSGNLSDEPISYRDDEAVERLSAIADAFLVHDREIRTRIDDSVIRV 370

Query: 184 QCEKKVRILRPGGLEIETLKRAISVELEYCVDE 216
                + + R  G     ++  + +     V  
Sbjct: 371 FRGSPLFLRRSRGYVPREVRLPVEIPPVLAVGA 403


>gi|168702039|ref|ZP_02734316.1| probable low molecular weight protein-tyrosine-phosphatase ywlE
           [Gemmata obscuriglobus UQM 2246]
          Length = 343

 Score = 43.1 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 38/254 (14%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE---IKKRPAMNPLI 61
           ++  S  +++  + L +G  + +P +  Y +            L+      +RPA  P +
Sbjct: 10  TVDPSGLVQRTRDALASGGAVVLPGDGGYVV------------LWRPGTAPERPA--PAL 55

Query: 62  CHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPC 121
                        ++   +  L    WP PLT+ +   +         A      FR P 
Sbjct: 56  LVFGPEEAAAAGVTIPKTARRLMARAWPAPLTVEVPAGNQVP-----GAANGFVRFRFPE 110

Query: 122 GFTKKL----IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLE 177
                L    +   G  L   +   S   ++T            E+ L I+ G+ + G +
Sbjct: 111 HPLFDLVVPALADLGPVLIADTGAESAADAVTRA--------GTEVALSINAGL-RGGPK 161

Query: 178 STIVNVQCEKKVRILRPGGLEIETLKRAIS-VELEYCVDETS-TPQSPGMLKSHYAPRSQ 235
            T+V         ++ PG    E + R  + + L  C   T  +P + G+ K   A R +
Sbjct: 162 PTVVRCSDAG-YAVVEPGAFPKEEIDRLAARIVLFVCTGNTCRSPLAEGLAKKLLADRLR 220

Query: 236 VRLRAIHVNPREAL 249
                +       L
Sbjct: 221 CATDELPARGFWVL 234


>gi|14521439|ref|NP_126915.1| hydrogenase expression/formation regulatory protein [Pyrococcus
           abyssi GE5]
 gi|5458658|emb|CAB50145.1| hypF hydrogenase expression/formation regulatory protein
           [Pyrococcus abyssi GE5]
          Length = 773

 Score = 42.7 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 52/175 (29%), Gaps = 36/175 (20%)

Query: 10  NALRKACEFLDA-------------GLPIAIPTETVYGLAVDSRNPTAIRRLYEIKK--R 54
           + LRKA + +D                           LA D+     +  L   K+  R
Sbjct: 202 DPLRKAAKLIDKGYIIAIKGIGGIH-------------LACDATREDVVAELR--KRLFR 246

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
           P   P      D+  VK  A +          +   P+ + L       +       L T
Sbjct: 247 PQ-KPFAIMAKDLETVKGFAYISREEEEELTSYR-RPI-VALRKREPFPLPENLAPGLHT 303

Query: 115 ACFRVPCGFTKKLIETYGH-PL-AIPSANRSGQISITNVKHILSSSICKEIPLII 167
               +P   T  ++  +   P+  + SAN  G   I + +      +      ++
Sbjct: 304 IGVMLPYAGTHYILFHWSKTPVYVMTSANFPGMPMIKDNEEAF-EKLKDVADYLL 357


>gi|153003392|ref|YP_001377717.1| zinc finger HypF domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026965|gb|ABS24733.1| zinc finger HypF domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 189

 Score = 42.0 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D  +  A+  L   K+R    PL   V D+   ++ A V      L       P  +
Sbjct: 75  LACDGTSSAAVVTLRARKRR-EEKPLAVMVRDLDEARRVAEVGEAEAALLTSV-ERP--I 130

Query: 95  VLDLLSTTDIHPLSTA 110
           VL+ ++   +  L   
Sbjct: 131 VLNPIARPRVPRLVRG 146


>gi|289644207|ref|ZP_06476297.1| (NiFe) hydrogenase maturation protein HypF [Frankia symbiont of
           Datisca glomerata]
 gi|289505973|gb|EFD26982.1| (NiFe) hydrogenase maturation protein HypF [Frankia symbiont of
           Datisca glomerata]
          Length = 921

 Score = 41.6 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 25/186 (13%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA  + +P A++ L E K R         V D+ + ++ A + P    + +   P   
Sbjct: 310 YHLACRADSPVAVQLLRERKAR-VGKAFAVMVRDLDVARRLAEIGPAEAAVLRG--PARP 366

Query: 93  TLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLI--ETYGHPLA------IPSANRSG 144
            ++L   +   +              +P      L+  +  G  +A      + SAN + 
Sbjct: 367 IVLLRRRADAPVAADVAPGNPLIGLLLPYSPLHHLLFAQVPGAAVAPPACVVLTSANLAD 426

Query: 145 QISITNV-------KHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRILRPGGL 197
           +    +          +  + +  + P+++    S       +V V   +++ I R  G 
Sbjct: 427 EPICFDDTDARGRLPALADAMLTHDRPILLPCDDS-------VVRVVDGRELPIRRSRGH 479

Query: 198 EIETLK 203
               ++
Sbjct: 480 TPLLVE 485


>gi|224373688|ref|YP_002608060.1| hypothetical protein NAMH_1680 [Nautilia profundicola AmH]
 gi|223589991|gb|ACM93727.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 146

 Score = 41.6 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 25/143 (17%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
           ++L +IK RP   P++  V  +  +K+   V      + +       T +     +  + 
Sbjct: 23  KKLNKIKNRPLNQPVLREVDSLETLKRFVRVPGKYKKMLRRA--KKTTFIFPNGESYRV- 79

Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
                        V      + ++ +   +   SAN   +        + +     +  +
Sbjct: 80  -------------VKDERHLEFLKKFKW-MYSTSANLHKK----RFDEVWARE---QADI 118

Query: 166 IIDGGISKI-GLESTIVNVQCEK 187
           I++       G  S+I  +   K
Sbjct: 119 IVEDKRGLFEGEPSSIFKLSKNK 141


>gi|12045114|ref|NP_072925.1| HemK family modification methylase [Mycoplasma genitalium G37]
 gi|255660258|ref|ZP_05405667.1| HemK family modification methylase [Mycoplasma genitalium G37]
 gi|2496352|sp|Q49404|Y259_MYCGE RecName: Full=Uncharacterized protein MG259
 gi|1045951|gb|AAC71479.1| modification methylase, HemK family [Mycoplasma genitalium G37]
 gi|166078831|gb|ABY79449.1| modification methylase, HemK family [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 456

 Score = 41.2 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 28/165 (16%)

Query: 3   IMSITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLIC 62
           ++ I ++  +++    L  GL   + T+T  GL   S + + + ++   K+R        
Sbjct: 274 VVDIKNTKTIKQ---LLKMGLAGIVNTDTQMGL--ISYSESTLDKI---KQRALNK---- 321

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
           H   +  +++   +      +A  FWPG  T + +  S                +RVP  
Sbjct: 322 HYVSMFGLEELKKLPKKLQQIASYFWPGSYTFIKNNKS----------------YRVPKN 365

Query: 123 FTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
                +      +   SAN S Q   T +    + S   + P  I
Sbjct: 366 LGLLNLFNAIGRVFCTSANISNQKPYTKLSDYQNDSYWIKQPCFI 410


>gi|284044007|ref|YP_003394347.1| (NiFe) hydrogenase maturation protein HypF [Conexibacter woesei DSM
           14684]
 gi|283948228|gb|ADB50972.1| (NiFe) hydrogenase maturation protein HypF [Conexibacter woesei DSM
           14684]
          Length = 818

 Score = 41.2 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 8/130 (6%)

Query: 33  YGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPL 92
           Y LA  +     +  L   K+R    P    V+ ++  +    +      L       P+
Sbjct: 235 YHLACRADEERVVAALRARKRR-EQRPFALMVASVAAARALVELGEAEERLL-CSRARPI 292

Query: 93  TL----VLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIE--TYGHPLAIPSANRSGQI 146
            L         +   +              +P     +L+     G PL + S N S + 
Sbjct: 293 VLAARRADGGAAGARVADAVAPGAPELGLMLPYTPLHQLLLTDAGGVPLVMTSGNVSDEP 352

Query: 147 SITNVKHILS 156
              +    L 
Sbjct: 353 IAFDDAEALR 362


>gi|87044022|gb|ABD16917.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044024|gb|ABD16918.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044026|gb|ABD16919.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044028|gb|ABD16920.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044030|gb|ABD16921.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044032|gb|ABD16922.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044034|gb|ABD16923.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044036|gb|ABD16924.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044038|gb|ABD16925.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044040|gb|ABD16926.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044042|gb|ABD16927.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044044|gb|ABD16928.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044046|gb|ABD16929.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044048|gb|ABD16930.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044050|gb|ABD16931.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044052|gb|ABD16932.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044054|gb|ABD16933.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044056|gb|ABD16934.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044058|gb|ABD16935.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044060|gb|ABD16936.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044062|gb|ABD16937.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044064|gb|ABD16938.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044066|gb|ABD16939.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044068|gb|ABD16940.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044070|gb|ABD16941.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044072|gb|ABD16942.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044074|gb|ABD16943.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044076|gb|ABD16944.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044078|gb|ABD16945.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044080|gb|ABD16946.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044082|gb|ABD16947.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044084|gb|ABD16948.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044086|gb|ABD16949.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044088|gb|ABD16950.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044090|gb|ABD16951.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044092|gb|ABD16952.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044094|gb|ABD16953.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044096|gb|ABD16954.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044098|gb|ABD16955.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044100|gb|ABD16956.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044102|gb|ABD16957.1| conserved hypothetical protein [Xylella fastidiosa]
 gi|87044104|gb|ABD16958.1| conserved hypothetical protein [Xylella fastidiosa]
          Length = 73

 Score = 41.2 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 119 VPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
           V       L   +   L   SAN +GQ      +  L  S+   +  I+DG    +   +
Sbjct: 2   VAHPLVSALCRAWNMALISTSANVAGQPPARR-REDLDPSLLPHLAGIVDGPTGGLAQPT 60

Query: 179 TIVNVQCEKKVRI 191
           +I + +    +R+
Sbjct: 61  SIRDARSGHILRL 73


>gi|238507339|ref|XP_002384871.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220689584|gb|EED45935.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 246

 Score = 40.8 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 47/200 (23%)

Query: 7   TDSNALRKACEF---LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK-KRP-AMNPLI 61
           T  N  + A +    L  G    +PTE  YGL   + +  AI R +  K +RP     +I
Sbjct: 13  TPPNVHKDALKVFQTLQEGGIAIVPTEVGYGL--IASSSEAITRAFHAKTRRPGHTQGII 70

Query: 62  --------CHV-------------SDISM----VKKHASVDPLSLHLAKLFWPGPLTLVL 96
                    HV              D+ M    +  + S  PL   ++        TL  
Sbjct: 71  GNYDVHKALHVLPEEKFNITKVLTHDLDMSLGIIAPYISDHPLLQGMSAE------TLEQ 124

Query: 97  DLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILS 156
                     +   +L     R        L    G  +   SAN +G+     V+  + 
Sbjct: 125 TTKDGNMAIHVGGGSLLLEVVR--------LHYEVGKVVVGSSANVTGKGQKFRVQD-IE 175

Query: 157 SSICKEIPLIIDGGISKIGL 176
             I +   +++D G+ +  +
Sbjct: 176 EKILEAADIVVDYGLQRYHV 195


>gi|282162738|ref|YP_003355123.1| carbamoyltransferase HypF [Methanocella paludicola SANAE]
 gi|282155052|dbj|BAI60140.1| carbamoyltransferase HypF [Methanocella paludicola SANAE]
          Length = 747

 Score = 40.4 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 29/143 (20%)

Query: 47  RLYEIKK---------------------RPAMNPLICHVSDISMVKKHASVDPLSLHLAK 85
           R+  IK                      RP   P       + +++K+A V+     L  
Sbjct: 209 RILAIKGVGGFHLCCKMDVTPLLRQRRNRPE-QPFALMAP-LPVIEKYAHVNEGERGLLD 266

Query: 86  LFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGFTKKLIETYGHPLAIPSANRSG 144
                P+ L   L     +       L T  F  P  GF   L +  G PL + SAN   
Sbjct: 267 S-MQRPIVL---LRRKHGVPESVAPGLHTVGFMTPYTGFHHLLFKDIGEPLIMTSANLPS 322

Query: 145 QISITNVKHILSSSICKEIPLII 167
           +  + + +      +       +
Sbjct: 323 EPMVKDNEEAFR-RLKGIADYYL 344


>gi|89902940|ref|YP_525411.1| hypothetical protein Rfer_4192 [Rhodoferax ferrireducens T118]
 gi|89347677|gb|ABD71880.1| expressed protein [Rhodoferax ferrireducens T118]
          Length = 226

 Score = 40.4 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 13  RKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKK 72
            +A + +  G    +P +  Y  A  + +  A++R+++ K R     L   +    + ++
Sbjct: 11  ARAFDAMRCGGIAIVPNDVGY--AAMAHSYDALQRIFDTKGRAPTK-LNAMIGHNQLHRR 67

Query: 73  HASVDPLSLHLAKLF---WPGPLTLVLDLLSTTDI-----HPLSTANLKTACFRV----- 119
                     +       +  PL ++     T          +  A+ +     +     
Sbjct: 68  LHRCSTRGREIVAAITEDYDLPLGVIAPADFTDPFLARLDPRVIEASTRDGTLLMLLNAG 127

Query: 120 PCGFTK-KLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI---SKIG 175
              F   +L +     +   SAN + Q +  +V   +   I     +I+D G+      G
Sbjct: 128 QFHFALSELSDAQDTAIFGSSANLTLQGTHFSV-EAIEPEIRAIADVIVDYGVLKYKPYG 186

Query: 176 LESTIVNVQCEKKVRILRPGGLEIETLKRAIS 207
             ST+++V+    + + R G +  ET+   + 
Sbjct: 187 CSSTLLDVES---LTVYRHG-IAYETIAWILK 214


>gi|89632586|gb|ABD77525.1| YrdC-like protein [Ictalurus punctatus]
          Length = 74

 Score = 40.4 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 156 SSSICKEIPLIIDGGI--SKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
              +   + +++DGG    +    ST+V++    + RI+R G     T+ 
Sbjct: 11  FEELWPRLAVVVDGGPIADQSRQGSTVVDLSVPGRYRIIRSGCACSATVA 60


>gi|332753939|gb|EGJ84314.1| carbamoyltransferase hypF domain protein [Shigella flexneri K-671]
          Length = 326

 Score = 40.0 bits (93), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 35  LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTL 94
           LA D+RN  A+  L E K RPA  PL   +         A   P +          P+ L
Sbjct: 226 LACDARNSNAVATLRERKHRPA-KPLAVML-------PVAESLPDAARQLLTTPAAPIVL 277

Query: 95  VLDLLST---TDIHPLSTANLKTACFRVPC 121
           V          DI P   +    AC   P 
Sbjct: 278 VDKKYVPELCDDIAPGLNSRGDVACEPAPA 307


>gi|330889219|gb|EGH21880.1| Sua5/YciO/YrdC/YwlC family protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 74

 Score = 40.0 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 132 GHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEKKVRI 191
           G PL   S    G     +  + +   +  ++ LIIDGGI  I   ST++N+   +   +
Sbjct: 2   GEPLMSVSLIMPGDTVPLSDPYEMRQILEHQVDLIIDGGIGGIS-ASTVINLAGGEP-EV 59

Query: 192 LRPGG 196
           +R G 
Sbjct: 60  VRVGC 64


>gi|152990295|ref|YP_001356017.1| hypothetical protein NIS_0546 [Nitratiruptor sp. SB155-2]
 gi|151422156|dbj|BAF69660.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 150

 Score = 40.0 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 17/99 (17%)

Query: 47  RLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHP 106
           +L  IK RP   P +  VS  S++K    V        +       T +        +  
Sbjct: 28  KLANIKNRPPSKPFLIAVSSFSVLKYFVRVPNKYKKRVRRS--KRSTFIYPNGKALRV-- 83

Query: 107 LSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQ 145
                      +    +  + ++ +G      SAN SG+
Sbjct: 84  ----------IKSTEHY--RFLKKFGW-FYSTSANESGK 109


>gi|4539152|emb|CAB39912.1| uptake hydrogenase [Rhodobacter sphaeroides]
          Length = 758

 Score = 39.7 bits (92), Expect = 0.57,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPAMNPLICHV 64
           + + +A   L  G  +A     V GL       D+R+  A+R+L   K+RP   P     
Sbjct: 214 DPVAEAARLLARGGILA-----VKGLGGFHLACDARDSGALRQLRLRKRRP-GKPFALM- 266

Query: 65  SDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP-CGF 123
           +   M    A +      L +     P   V+ +     +       + T     P    
Sbjct: 267 ATEEMAAGIADLAQADRVLLRD----PAAPVVLVRGRGLLPEEVAPGMTTLGIMRPYTPL 322

Query: 124 TKKLIETYGHPLAIPSANRSGQIS 147
             +LIE +G PL + SANRSG   
Sbjct: 323 HHRLIEAFGGPLVMTSANRSGAPQ 346


>gi|332749610|gb|EGJ80027.1| ribosome maturation factor [Shigella flexneri K-671]
          Length = 64

 Score = 39.7 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 128 IETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            + YG PL   SAN SG      V  +  +      P ++ G        S I +    +
Sbjct: 2   CQAYGKPLVSTSANLSGLPPCRTVDEV-RAQFGAAFP-VVPGETGGRLNPSEIRDALTGE 59

Query: 188 KVR 190
             R
Sbjct: 60  LFR 62


>gi|169786339|ref|XP_001827630.1| expressed protein [Aspergillus oryzae RIB40]
 gi|83776378|dbj|BAE66497.1| unnamed protein product [Aspergillus oryzae]
          Length = 246

 Score = 39.3 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 7  TDSNALRKACEF---LDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIK-KRP 55
          T  N  + A +    L  G    +PTE  YGL   + +  AI R +  K +RP
Sbjct: 13 TPPNVHKDALKVFQTLQEGGIAIVPTEVGYGL--IASSSEAITRAFHAKTRRP 63


>gi|326402507|ref|YP_004282588.1| hydrogenase maturation protein HypF [Acidiphilium multivorum
           AIU301]
 gi|325049368|dbj|BAJ79706.1| hydrogenase maturation protein HypF [Acidiphilium multivorum
           AIU301]
          Length = 754

 Score = 39.3 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 5/164 (3%)

Query: 52  KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
           K RP   P      D +           +   A      P+ L+L       + P     
Sbjct: 242 KSRP-DKPFAVLFPDDARTLDSCVAADAAARAALRGPARPI-LLLPRRPGAPLAPAIAPG 299

Query: 112 LKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGG 170
             T    +       L+ E +G PL   SANRSG+  +T+     ++        +    
Sbjct: 300 FGTIGAMLADSPLHHLLAEGFGAPLVATSANRSGEPMLTDPDAAAAALAGIADAFLHHDR 359

Query: 171 ISKIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
             +  ++ +++ +  +   RILR G   +  ++RA+   L   V
Sbjct: 360 PIERPVDDSVLRII-DGAPRILRAGR-GLCPIERALPFRLAEPV 401


>gi|86739783|ref|YP_480183.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. CcI3]
 gi|86566645|gb|ABD10454.1| (NiFe) hydrogenase maturation protein HypF [Frankia sp. CcI3]
          Length = 848

 Score = 39.3 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 43/155 (27%), Gaps = 23/155 (14%)

Query: 33  YGLAVDSRNP-------TAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAK 85
           Y LA  + N        TA+ RL   K RP   P    V D++     A +      L  
Sbjct: 242 YHLACSAENDPGDTAGDTALARLRARKDRP-DKPFAVMVRDLATAALVADLSSAEAALLA 300

Query: 86  LFWPGPLTLVLDLLST-----TDIHPLSTANLKTACFRVPCGFTKKLIETYGHP------ 134
                P+ LV    +      + +  L           +P      L+            
Sbjct: 301 SPA-APIVLVRRSPAAGMSGISGMSRLVAPGTPLVGLLLPYTPVHHLLFAPVPGGGPRPP 359

Query: 135 --LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
             L + S NRSG+             +       +
Sbjct: 360 RMLVMTSGNRSGEPICFADDDA-RDRLAGLADAFL 393


>gi|148259347|ref|YP_001233474.1| (NiFe) hydrogenase maturation protein HypF [Acidiphilium cryptum
           JF-5]
 gi|146401028|gb|ABQ29555.1| (NiFe) hydrogenase maturation protein HypF [Acidiphilium cryptum
           JF-5]
          Length = 754

 Score = 38.9 bits (90), Expect = 0.98,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 52  KKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN 111
           K RP   P      D +           +   A      P+ L+L       + P     
Sbjct: 242 KSRP-DKPFAVLFPDDARTLDSCVAADAAARAALRGPARPI-LLLPRRPGAPLAPAIAPG 299

Query: 112 LKTACFRVPCGFTKKLI-ETYGHPLAIPSANRSGQISIT 149
             T    +       L+ E +G PL   SANRSG+  +T
Sbjct: 300 FGTIGAMLADSPLHHLLAEGFGAPLVATSANRSGEPMLT 338


>gi|15668895|ref|NP_247698.1| hydrogenase expression regulatory protein HypF [Methanocaldococcus
           jannaschii DSM 2661]
 gi|3024906|sp|Q58123|HYPF_METJA RecName: Full=Probable carbamoyltransferase hypF; AltName:
           Full=Carbamoyl phosphate-converting enzyme hypF;
           AltName: Full=[NiFe]-hydrogenase maturation factor hypF;
           Short=Hydrogenase maturation protein hypF
 gi|1591430|gb|AAB98708.1| hydrogenase expression regulatory protein (hypF)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 766

 Score = 38.9 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 15/171 (8%)

Query: 2   QIMSITDSNALRKACEFLDAGLPIAIPTETVYGLA-----VDSRNPTAIRRLYEIKKRPA 56
           +I++  D  A+R+  + L+ G  +AI      G+              +  L +   RP 
Sbjct: 203 EIIAEKDE-AIRETVKLLEEGHILAIK-----GIGGTHLACKVGEDDVVLELRKRLGRP- 255

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P     S I   +  A  D    +        P+ ++              +NL T  
Sbjct: 256 TQPFAVM-SKIEYTELFAEFDEDEKNALLSLR-RPIVVLKKSQDYDKYFSKYVSNLDTIG 313

Query: 117 FRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLII 167
              P      L+        + SAN  G   + +   IL   +       +
Sbjct: 314 VMFPYSGLHYLLFDKEIAYVMTSANLPGLPMVKDNDEILK-KLNGIADYFL 363


>gi|149007083|ref|ZP_01830752.1| hypothetical protein CGSSp18BS74_10255 [Streptococcus pneumoniae
          SP18-BS74]
 gi|225854719|ref|YP_002736231.1| hypothetical protein SPJ_1168 [Streptococcus pneumoniae JJA]
 gi|225860913|ref|YP_002742422.1| hypothetical protein SPT_0974 [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298229972|ref|ZP_06963653.1| hypothetical protein SpneCMD_04802 [Streptococcus pneumoniae str.
          Canada MDR_19F]
 gi|298254337|ref|ZP_06977923.1| hypothetical protein SpneCM_01824 [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298502749|ref|YP_003724689.1| hypothetical protein HMPREF0837_11247 [Streptococcus pneumoniae
          TCH8431/19A]
 gi|307127156|ref|YP_003879187.1| hypothetical protein SP670_1022 [Streptococcus pneumoniae 670-6B]
 gi|147761387|gb|EDK68353.1| hypothetical protein CGSSp18BS74_10255 [Streptococcus pneumoniae
          SP18-BS74]
 gi|225723623|gb|ACO19476.1| hypothetical protein SPJ_1168 [Streptococcus pneumoniae JJA]
 gi|225726565|gb|ACO22416.1| hypothetical protein SPT_0974 [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298238344|gb|ADI69475.1| conserved hypothetical protein [Streptococcus pneumoniae
          TCH8431/19A]
 gi|306484218|gb|ADM91087.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
 gi|327389490|gb|EGE87835.1| hypothetical protein SPAR5_1178 [Streptococcus pneumoniae
          GA04375]
 gi|332074588|gb|EGI85062.1| hypothetical protein SPAR148_1191 [Streptococcus pneumoniae
          GA17545]
          Length = 47

 Score = 38.9 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 41 NPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFW 88
          N   + R +  K+R    P +     +  ++  A ++P      + F+
Sbjct: 4  NKAGLERKFAAKERKRNKPGVVLCGSMDELRALAQLNPE----IEAFY 47


>gi|124486392|ref|YP_001031008.1| hypothetical protein Mlab_1577 [Methanocorpusculum labreanum Z]
 gi|124363933|gb|ABN07741.1| (NiFe) hydrogenase maturation protein HypF [Methanocorpusculum
           labreanum Z]
          Length = 742

 Score = 38.9 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 5   SITDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYE-IK---KRPAMNPL 60
           +I  ++ +  A E LDAG  +A     V G+     +   + +  E +K    RP    L
Sbjct: 192 NIEGADPISAAAELLDAGNIVA-----VRGVGG--FHICCVEKTAERLKQNLGRP-NQSL 243

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
              +   +M             L K    GP+  ++ L         + + L      +P
Sbjct: 244 AVMMKPETMRDFVVEPTKEEWDLLK----GPVHPIMILDKIDPESHRALSQLHNLGVMLP 299

Query: 121 -CGFTKKLIETYGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLII 167
             G    L      PL I  SAN  G   IT  K I+   + + +  I+
Sbjct: 300 YTGLHHLLFAKLKSPLLIMTSANAPGTPMITETK-IIIEKMGRVVDYIL 347


>gi|226947037|ref|YP_002802110.1| hydrogenase maturation carbamoyltransferase HypF [Azotobacter
           vinelandii DJ]
 gi|226721964|gb|ACO81135.1| hydrogenase maturation carbamoyltransferase, HypF [Azotobacter
           vinelandii DJ]
          Length = 768

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 25/175 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +A   L  G  +A+    V G  LA D+RN  A+  L   K+RPA  P     ++ 
Sbjct: 197 DPIERALAALARGEILAL--RGVGGFHLACDARNAGAVAELRRRKRRPA-KPFALMAANP 253

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTK 125
           + ++    ++     LA+L  P    ++L      D  +      +L      +P     
Sbjct: 254 ASLQALVELNENG--LAELSGPAAPVVLLRKRPAADDLLAAGVAPDLAWLGAMLPHSPLH 311

Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPL 165
            L+  E  G P             L + SAN SG   IT         +     L
Sbjct: 312 WLLFHEAAGRPAGTGWAAAPQDLLLVMTSANLSGAPPITGNAEA-RERLAGIADL 365


>gi|3041688|sp|P40596|HYPF_AZOVI RecName: Full=Carbamoyltransferase hypF; AltName: Full=Carbamoyl
           phosphate-converting enzyme hypF; AltName:
           Full=[NiFe]-hydrogenase maturation factor hypF;
           Short=Hydrogenase maturation protein hypF
          Length = 776

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 25/175 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +A   L  G  +A+    V G  LA D+RN  A+  L   K+RPA  P     ++ 
Sbjct: 205 DPIERALAALARGEILAL--RGVGGFHLACDARNAGAVAELRRRKRRPA-KPFALMAANP 261

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTK 125
           + ++    ++     LA+L  P    ++L      D  +      +L      +P     
Sbjct: 262 ASLQALVELNENG--LAELSGPAAPVVLLRKRPAADDLLAAGVAPDLAWLGAMLPHSPLH 319

Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPL 165
            L+  E  G P             L + SAN SG   IT         +     L
Sbjct: 320 WLLFHEAAGRPAGTGWAAAPQDLLLVMTSANLSGAPPITGNAEA-RERLAGIADL 373


>gi|303244343|ref|ZP_07330679.1| (NiFe) hydrogenase maturation protein HypF [Methanothermococcus
           okinawensis IH1]
 gi|302485238|gb|EFL48166.1| (NiFe) hydrogenase maturation protein HypF [Methanothermococcus
           okinawensis IH1]
          Length = 800

 Score = 38.9 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 17/155 (10%)

Query: 9   SNALRKACEFLDAGLPIAIPTETVYG-----LAVDSRNPTAIRRLYEIK-KRPAMNPLIC 62
            + +      L  G  IAI      G     LA    N   +  L   K  RP   P   
Sbjct: 209 EDVIENTVNLLKEGHIIAIK-----GVGGTHLACCCDNDEVVLNLRN-KLNRP-TQPFAI 261

Query: 63  HVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCG 122
             + +  +   A+ D   L+L K     P+ ++              +NL T    +P  
Sbjct: 262 M-TKLEYLDLFATFDDDELNLLKSS-KRPIVVLEKNKDYNKYFSKYVSNLNTIGVMLPYS 319

Query: 123 FTKKLI--ETYGHPLAIPSANRSGQISITNVKHIL 155
               L+   T      + SAN  G       K IL
Sbjct: 320 ALHYLLFDNTDKIAYIMTSANLPGLPMSIKNKDIL 354


>gi|39243|emb|CAA45185.1| ORF6 [Azotobacter vinelandii]
 gi|398009|gb|AAA19510.1| hypF [Azotobacter vinelandii]
          Length = 755

 Score = 38.5 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 25/175 (14%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYG--LAVDSRNPTAIRRLYEIKKRPAMNPLICHVSDI 67
           + + +A   L  G  +A+    V G  LA D+RN  A+  L   K+RPA  P     ++ 
Sbjct: 184 DPIERALAALARGEILAL--RGVGGFHLACDARNAGAVAELRRRKRRPA-KPFALMAANP 240

Query: 68  SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD--IHPLSTANLKTACFRVPCGFTK 125
           + ++    ++     LA+L  P    ++L      D  +      +L      +P     
Sbjct: 241 ASLQALVELNENG--LAELSGPAAPVVLLRKRPAADDLLAAGVAPDLAWLGAMLPHSPLH 298

Query: 126 KLI--ETYGHP-------------LAIPSANRSGQISITNVKHILSSSICKEIPL 165
            L+  E  G P             L + SAN SG   IT         +     L
Sbjct: 299 WLLFHEAAGRPAGTGWAAAPQDLLLVMTSANLSGAPPITGNAEA-RERLAGIADL 352


>gi|196232004|ref|ZP_03130860.1| hypothetical protein CfE428DRAFT_4026 [Chthoniobacter flavus
           Ellin428]
 gi|196224126|gb|EDY18640.1| hypothetical protein CfE428DRAFT_4026 [Chthoniobacter flavus
           Ellin428]
          Length = 128

 Score = 38.5 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 188 KVRILRPGGLEIETLKRAISVELEYCVDE--TSTPQSPGMLKSHYAPRSQVRLRA----- 240
           + R  RP   E+      + V     +    +   ++PG L+SHYAPR+ +RL       
Sbjct: 15  EARNYRPTETELSNFFERLGVSFSAMLRGERSVGVEAPGQLESHYAPRTPLRLIKPGVEV 74

Query: 241 -IHVNPREALIRFGNVPIKNIENAIISLN---LSKTGK 274
            I+        R G++   +   A        LS TG+
Sbjct: 75  MIYDQENHVQARLGSLAFCHPSTAAHFTYEEILSPTGR 112


>gi|118475666|ref|YP_891523.1| hypothetical protein CFF8240_0321 [Campylobacter fetus subsp. fetus
           82-40]
 gi|261885543|ref|ZP_06009582.1| hypothetical protein CfetvA_10560 [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414892|gb|ABK83312.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 140

 Score = 38.5 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 19/97 (19%)

Query: 50  EIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLST 109
           ++K RP   P +  VS   M+K    V     +L +       T +              
Sbjct: 23  KLKNRPLDQPCLICVSKFEMLKNFTRVPCKFKNLVRRA--KKTTFIYP------------ 68

Query: 110 ANLKTACFRV-PCGFTKKLIETYGHPLAIPSANRSGQ 145
               T   RV       K ++  G      SAN  GQ
Sbjct: 69  ---NTKAIRVIKDHPHSKFLDELGW-AYSSSANIHGQ 101


>gi|149195151|ref|ZP_01872242.1| hypothetical protein CMTB2_04512 [Caminibacter mediatlanticus TB-2]
 gi|149134703|gb|EDM23188.1| hypothetical protein CMTB2_04512 [Caminibacter mediatlanticus TB-2]
          Length = 144

 Score = 38.5 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 25/139 (17%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
            +L +IK+R     ++  V  +  +KK   V        +       T +     +  + 
Sbjct: 23  EKLNKIKQRNLNKKILREVDSLYTLKKFVRVPNKFKKQVRRA--KKTTFIYSNGESFRV- 79

Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPL 165
                       R       + ++ +   +   SAN +G+               K +  
Sbjct: 80  -----------VRDKKHL--EFLKKFKW-MYSTSANLTGRY--------FDEDWAKSVAD 117

Query: 166 IIDGGISKIGLESTIVNVQ 184
           II G     G  STI  + 
Sbjct: 118 IIVGSDFFEGKPSTIYKLS 136


>gi|186474680|ref|YP_001863651.1| carbamoyltransferase [Burkholderia phymatum STM815]
 gi|184198639|gb|ACC76601.1| Carbamoyltransferase [Burkholderia phymatum STM815]
          Length = 572

 Score = 38.5 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 53/192 (27%), Gaps = 35/192 (18%)

Query: 11  ALRKACEFLDAGLPIAI--------PTETVYGLAVD-----SRNPTAIRRLY-EIKKRPA 56
           ++ +    L    P+          P      L        + +P A++ +  +IK R  
Sbjct: 383 SIAELARILADNEPVVFLAGRAELGPR----ALGARSILAAATSP-AMKTILNDIKHREH 437

Query: 57  MNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTAC 116
             P+     +           P    L                    +H   +A L+T  
Sbjct: 438 FRPVAPICLEDRAPTVFCPGTPDPYMLFDHH----TRAEWQDKVPAVVHLDGSARLQTIA 493

Query: 117 FRVPCGFTKKLIE---TYGHPLAI-PSANRSGQISITNVKHILSSSICKEIPLIIDGGI- 171
                   + LIE     G PL    SAN  G+          S+     +  +   G+ 
Sbjct: 494 RTSEHPVAQLLIEYEKLTGLPLLCNTSANHHGRGF---FPDAASACKWGRVEHVWCDGLL 550

Query: 172 ----SKIGLEST 179
                  GL S+
Sbjct: 551 LSKACGTGLPSS 562


>gi|205375650|ref|ZP_03228437.1| hypothetical protein Bcoam_22035 [Bacillus coahuilensis m4-4]
          Length = 47

 Score = 38.1 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 160 CKEIPLIIDGGISKIGLESTIVNVQCEKK---VRILRPGGLEIET 201
             +   +++G    +G+ESTIV++    +     +LRPG +  E 
Sbjct: 2   FGDTVFVLEGDGVDVGIESTIVDLSRLDQGMGPVLLRPGAITPED 46


>gi|126178367|ref|YP_001046332.1| (NiFe) hydrogenase maturation protein HypF [Methanoculleus
           marisnigri JR1]
 gi|125861161|gb|ABN56350.1| (NiFe) hydrogenase maturation protein HypF [Methanoculleus
           marisnigri JR1]
          Length = 735

 Score = 37.7 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 20/164 (12%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV--DSRNPTAIRRLYEIKKR--PAMNPLICHVS 65
           + +R+    LDAG  +AI      G+     +    A      +K+R      PL    +
Sbjct: 196 DPIRETAALLDAGSIVAIR-----GIGGFHIACTEEAAG---VLKRRLGRTEQPLAVM-A 246

Query: 66  DISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTK 125
               V++ A V      +       P+ ++      +  HP  ++ L T    +P     
Sbjct: 247 TAEEVERIAIVSDEERRIL-HSRERPIAVLEKRDPAS--HPTISS-LHTIGCMLPYTGLH 302

Query: 126 KLIET-YGHP-LAIPSANRSGQISITNVKHILSSSICKEIPLII 167
            L+     HP L + SAN  G   IT++   L   +  ++  I+
Sbjct: 303 HLLFANLAHPLLVMTSANLPGYPMITDLDTAL-ERLPGQVDYIL 345


>gi|313682968|ref|YP_004060706.1| hypothetical protein Sulku_1846 [Sulfuricurvum kujiense DSM 16994]
 gi|313155828|gb|ADR34506.1| hypothetical protein Sulku_1846 [Sulfuricurvum kujiense DSM 16994]
          Length = 143

 Score = 37.7 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 18/114 (15%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
           +RL +IK R    P +   +D  M++K   + P+     +  +    T ++   +   + 
Sbjct: 21  QRLQQIKMRDTAKPFLKVYADFKMLRKDIRIPPIHKRRVR--YARKTTFIVKDQAFRYVD 78

Query: 106 PLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSI 159
                         P     +LI+ YG  L   SAN SG+          S  I
Sbjct: 79  E-------------PNHS--RLIKKYGW-LYSTSANESGKNYDETFCQAFSDLI 116


>gi|152991436|ref|YP_001357158.1| hypothetical protein NIS_1695 [Nitratiruptor sp. SB155-2]
 gi|151423297|dbj|BAF70801.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 214

 Score = 37.3 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 45  IRRLYEIKKRPAMNPLICHVSDI-SMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTD 103
           + +LY IK R    PLI  +SD  +   +   +D +   +          +V   +    
Sbjct: 66  LDKLYRIKMRKEGKPLILMISDFTNDTTQRLDIDQIVKKIRIALLNSGKFIVTTAVRAGG 125

Query: 104 IHPLSTANLKTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVK 152
           +   +T  L+    R    F +K I   G  +  P  + SG+I      
Sbjct: 126 VEDRATRELRK--LRKNKEFNQKTIAKEGT-IIAPDLSLSGKIIQRTTP 171


>gi|262204219|ref|YP_003275427.1| hypothetical protein Gbro_4394 [Gordonia bronchialis DSM 43247]
 gi|262087566|gb|ACY23534.1| hypothetical protein Gbro_4394 [Gordonia bronchialis DSM 43247]
          Length = 482

 Score = 37.3 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 190 RILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREAL 249
           R +RPG       ++ ++   E         QSP     HYA  S  +L  I +    A 
Sbjct: 17  RTIRPGQSSPPM-RQVLADRRELMASARERAQSPFATLRHYAVTSPGKLVIIMLVIGAAC 75

Query: 250 IRFGNVPIKNIENAIISLN--LSKTGKLKEAAFNLFNYMKIADDS 292
           +  G      +E    +L   + +   L EAA  L++ + IAD S
Sbjct: 76  VTTGLYASSVLEKRTQTLQQMIDRAEPLAEAAQVLYSSLSIADAS 120


>gi|217032464|ref|ZP_03437957.1| hypothetical protein HPB128_175g25 [Helicobacter pylori B128]
 gi|298736127|ref|YP_003728652.1| hypothetical protein HPB8_631 [Helicobacter pylori B8]
 gi|216945872|gb|EEC24492.1| hypothetical protein HPB128_175g25 [Helicobacter pylori B128]
 gi|298355316|emb|CBI66188.1| hypothetical protein HPB8_631 [Helicobacter pylori B8]
          Length = 143

 Score = 37.0 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
            +L  +K RP    ++   +D S +K          +L +       T +        + 
Sbjct: 21  EKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIRRSAK--TTFIYPNSKAVRVI 78

Query: 106 PLSTANL 112
                + 
Sbjct: 79  KGRHGDF 85


>gi|317011126|gb|ADU84873.1| hypothetical protein HPSA_04445 [Helicobacter pylori SouthAfrica7]
          Length = 143

 Score = 37.0 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
            +L  +KKRP    ++   +D + +K  A    +  +L +       T +        + 
Sbjct: 21  EKLNALKKRPKNKSVLIESADFTTLKSLARAPNVFKNLIRRSAK--TTFIYPNSKAVRVI 78

Query: 106 PLSTANL 112
                + 
Sbjct: 79  KGRHGDF 85


>gi|87620213|gb|ABD38670.1| Ischemia/reperfusion inducible protein [Ictalurus punctatus]
          Length = 61

 Score = 37.0 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 159 ICKEIPLIIDGGI--SKIGLESTIVNVQCEKKVRILRPGGLEIETLK 203
           +   + +++DGG    +    ST+V++    + RI+R G     T+ 
Sbjct: 1   LWPRLAVVVDGGPIADQSRQGSTVVDLSVPGRYRIIRSGCACSATVA 47


>gi|15645534|ref|NP_207710.1| hypothetical protein HP0918 [Helicobacter pylori 26695]
 gi|2314058|gb|AAD07967.1| predicted coding region HP0918 [Helicobacter pylori 26695]
          Length = 143

 Score = 37.0 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 2/67 (2%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
            +L  +K RP    ++   +D S +K          +L +       T +        + 
Sbjct: 21  EKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKNLIRRSAK--TTFIYPNSKAVRVI 78

Query: 106 PLSTANL 112
                + 
Sbjct: 79  RGRHGDF 85


>gi|271968371|ref|YP_003342567.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270511546|gb|ACZ89824.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 945

 Score = 37.0 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
            R LR  G   E ++  +    EY    +    +PG+   HY    +V           A
Sbjct: 588 PRALRQLGYPEEQVEAIV----EYIASNSHVVDAPGLKPEHY----EVF---DCAMGERA 636

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAA 279
           +   G+V +       +S  +SKT  L EAA
Sbjct: 637 IAPMGHVRMMAAAQPFLSGAISKTVNLPEAA 667


>gi|83589855|ref|YP_429864.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Moorella
          thermoacetica ATCC 39073]
 gi|83572769|gb|ABC19321.1| 2-hydroxyglutaryl-CoA dehydratase, D-component [Moorella
          thermoacetica ATCC 39073]
          Length = 421

 Score = 37.0 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 5/42 (11%)

Query: 10 NALRKACEFLDAGLPIA-----IPTETVYGLAVDSRNPTAIR 46
          N + +A        P+       PTE +YGL V    P A  
Sbjct: 51 NTIDQAAAAFLQKGPVVWHNVFFPTEILYGLGVIPFAPEAAA 92


>gi|84495900|ref|ZP_00994754.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp.
           HTCC2649]
 gi|84382668|gb|EAP98549.1| ribonucleotide-diphosphate reductase alpha subunit [Janibacter sp.
           HTCC2649]
          Length = 987

 Score = 37.0 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHY 230
           IVN+      R LR  G   ET++  +    E+  D+     +PG+   HY
Sbjct: 581 IVNLT---IPRALRKLGYTEETVEAIV----EFIADKGHVIDAPGLKTEHY 624


>gi|320101013|ref|YP_004176605.1| (NiFe) hydrogenase maturation protein HypF [Desulfurococcus mucosus
           DSM 2162]
 gi|319753365|gb|ADV65123.1| (NiFe) hydrogenase maturation protein HypF [Desulfurococcus mucosus
           DSM 2162]
          Length = 767

 Score = 37.0 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 73/224 (32%), Gaps = 41/224 (18%)

Query: 10  NALRKACEFLDAGLPIAIPTETVYGLAV-----DSRNPTAIR----------RLYEIKKR 54
           + L +A   +D G  +A     V GL        + +   ++          + +     
Sbjct: 202 DPLVEAARLIDEGYIVA-----VKGLGGYHIASLATDDDVVQRLRERKRRPRKPFA---- 252

Query: 55  PAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKT 114
                      D S+++    +D     + +   P    L+L     + +  L +  L  
Sbjct: 253 -------VMGLDTSILELLVYMDEADREVLES--PQAPILLLPKREDSPVSRLVSPGLSH 303

Query: 115 ACFRV---PCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGI 171
               +   P  F   L+ T    L + S N SG+    +      S + + +   +    
Sbjct: 304 EGVFIAYTPLHFIL-LMHTRDKFLVMTSGNVSGEPMCRDD-ECARSKLSQIVDFFLVHDR 361

Query: 172 SKIG-LESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCV 214
             +  ++ +++     + V + R  G     +K  I V LE  V
Sbjct: 362 DIVNRVDDSVLRKTGGEYVLLRRSRGFAPAWIK--IPVRLEREV 403


>gi|170078906|ref|YP_001735544.1| type II NADH dehydrogenase A [Synechococcus sp. PCC 7002]
 gi|22652016|gb|AAN03562.1|AF381043_1 type II NADH dehydrogenase A [Synechococcus sp. PCC 7002]
 gi|169886575|gb|ACB00289.1| type II NADH dehydrogenase A [Synechococcus sp. PCC 7002]
          Length = 460

 Score = 37.0 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 26/144 (18%)

Query: 180 IVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLR 239
           +V++  + K  ++  G +  ++L  A  V   Y  ++   P +PG+          + +R
Sbjct: 92  VVDIDPDSKTVVMNEGIVNYDSLIVATGVSHHYFGNDHWKPYAPGLKTV----EDALEIR 147

Query: 240 AIHVNPREALIRFGNVPIKNIENAIISLNLSKT-----GKLKEAAFNLFNYM----KIAD 290
                  EA  +  +  ++      + +    T     G + E A   ++ +    +  D
Sbjct: 148 HRIFMAFEAAEKETDPALQQAWLTFVIVGGGPTGVELAGAIAEIA---YSVLKKDFRKID 204

Query: 291 DSGASSIAFSSIPNHGLGIAINNR 314
            + A  I               +R
Sbjct: 205 TTRARIILLEG----------MDR 218


>gi|37522725|ref|NP_926102.1| phosphoglycerate mutase [Gloeobacter violaceus PCC 7421]
 gi|35213727|dbj|BAC91097.1| glr3156 [Gloeobacter violaceus PCC 7421]
          Length = 192

 Score = 36.6 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 20/136 (14%)

Query: 79  LSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVPCGFTKKLIETYG-HPLAI 137
            +  L +  WP P+  V   L  +D       +  T     P GF   + +  G  P   
Sbjct: 56  RTARLLEAAWPSPV--VEPRLRESDFGDWEGLDGDTLQASDPAGFAAWMADPVGFRPPGG 113

Query: 138 PSANRSGQISITNVKHILSSSICKEIPLIIDGGI------SKIGLE-----------STI 180
            S     +      +  L     + I  +  GG       + +GL            +++
Sbjct: 114 ESVGELCERVAEFFQEALERFADQTIAAVCHGGPIRAMVLAGLGLPLECFWHFNPPWASV 173

Query: 181 VNVQCEKKVRILRPGG 196
             ++    VR LR  G
Sbjct: 174 SRLEVRGPVRQLRYFG 189


>gi|254776379|ref|ZP_05217895.1| NAD-dependent epimerase/dehydratase:Short-chain
           dehydrogenase/reductase SDR [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 246

 Score = 36.6 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 1   MQIMSI-TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M+I  +  D +A ++  + L  G   A+      G+  D  +  A+ + +  K R  + P
Sbjct: 26  MKIAVLDVDEHAAQRVTDDLRTGGATAL------GVGADVTDRAAVEQAF-AKVRSELGP 78

Query: 60  LICHVSDISM--VKKHASVDPLSL-HLAKLFWPG 90
           +   V+   M        +   S   +  +   G
Sbjct: 79  VTVLVTSAGMFGFSPFLDITAESWSRIIDVNLTG 112


>gi|330466451|ref|YP_004404194.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora
           maris AB-18-032]
 gi|328809422|gb|AEB43594.1| vitamin B12-dependent ribonucleotide reductase [Verrucosispora
           maris AB-18-032]
          Length = 954

 Score = 36.6 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 21/113 (18%)

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
            R LR  G   E ++  +    E+  D      +PG+   HY P     +    + P   
Sbjct: 582 PRALRSLGYPEEQVEAIV----EHIADHGHVVDAPGLKPEHY-PVFDCAMGERSIAPM-- 634

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
               G+V +       IS  +SKT  + E A                 I F  
Sbjct: 635 ----GHVRMMAAVQPFISGAISKTVNMPEQATV----------EDVEKIYFEG 673


>gi|302866053|ref|YP_003834690.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora aurantiaca ATCC 27029]
 gi|302568912|gb|ADL45114.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora aurantiaca ATCC 27029]
          Length = 964

 Score = 36.6 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 21/113 (18%)

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
            R LR  G   E ++  +    E+  D      +PG+   HY P     +    + P   
Sbjct: 592 PRALRSLGYPEEQVEAIV----EHIADHGHVVDAPGLKPEHY-PVFDCAMGERSIAPM-- 644

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
               G+V +       IS  +SKT  + E A                 I F  
Sbjct: 645 ----GHVRMMAAVQPFISGAISKTVNMPEQATV----------EDVEKIYFEG 683


>gi|315502612|ref|YP_004081499.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. L5]
 gi|315409231|gb|ADU07348.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
           [Micromonospora sp. L5]
          Length = 964

 Score = 36.6 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 21/113 (18%)

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
            R LR  G   E ++  +    E+  D      +PG+   HY P     +    + P   
Sbjct: 592 PRALRSLGYPEEQVEAIV----EHIADHGHVVDAPGLKPEHY-PVFDCAMGERSIAPM-- 644

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
               G+V +       IS  +SKT  + E A                 I F  
Sbjct: 645 ----GHVRMMAAVQPFISGAISKTVNMPEQATV----------EDVEKIYFEG 683


>gi|118465832|ref|YP_883121.1| NAD-dependent epimerase/dehydratase:short chain
           dehydrogenase/reductase SDR [Mycobacterium avium 104]
 gi|118167119|gb|ABK68016.1| NAD-dependent epimerase/dehydratase:Short-chain
           dehydrogenase/reductase SDR [Mycobacterium avium 104]
          Length = 252

 Score = 36.6 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 1   MQIMSI-TDSNALRKACEFLDAGLPIAIPTETVYGLAVDSRNPTAIRRLYEIKKRPAMNP 59
           M+I  +  D +A ++  + L  G   A+      G+  D  +  A+ + +  K R  + P
Sbjct: 26  MKIAVLDVDEHAAQRVTDDLRTGGATAL------GVGADVTDRAAVEQAF-AKVRSELGP 78

Query: 60  LICHVSDISM--VKKHASVDPLSL-HLAKLFWPG 90
           +   V+   M        +   S   +  +   G
Sbjct: 79  VTVLVTSAGMFGFSPFLDITAESWSRIIDVNLTG 112


>gi|238063474|ref|ZP_04608183.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp.
           ATCC 39149]
 gi|237885285|gb|EEP74113.1| vitamin B12-dependent ribonucleotide reductase [Micromonospora sp.
           ATCC 39149]
          Length = 972

 Score = 36.6 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 21/113 (18%)

Query: 189 VRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREA 248
            R LR  G   E ++  +    E+  D      +PG+   HY P     +    + P   
Sbjct: 587 PRALRSLGYPEEQVEAIV----EHIADHGHVVDAPGLKPEHY-PVFDCAMGERSIAPM-- 639

Query: 249 LIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIADDSGASSIAFSS 301
               G+V +       IS  +SKT  + E A                 I F  
Sbjct: 640 ----GHVRMMAAVQPFISGAISKTVNMPEQATV----------EDVEKIYFEG 678


>gi|208434821|ref|YP_002266487.1| hypothetical protein HPG27_867 [Helicobacter pylori G27]
 gi|208432750|gb|ACI27621.1| hypothetical protein HPG27_867 [Helicobacter pylori G27]
          Length = 143

 Score = 36.6 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
            RL  +K RP    ++   +D + +K    V     +L +       T +        + 
Sbjct: 21  ERLNALKNRPKNQSVLIESADFTTLKSLVRVPNAFKNLIRRSAK--TTFIYPNSKAVRVV 78

Query: 106 PLSTANL 112
                + 
Sbjct: 79  KGRHGDF 85


>gi|18977587|ref|NP_578944.1| hypothetical protein PF1215 [Pyrococcus furiosus DSM 3638]
 gi|18893304|gb|AAL81339.1| hypothetical protein PF1215 [Pyrococcus furiosus DSM 3638]
          Length = 46

 Score = 36.6 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 121 CGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEI 163
                KLIE    P+A PSAN SG+      +H+ +    + +
Sbjct: 4   NEIASKLIEFSKKPIAAPSANISGKPIPITPEHVANDFYGRIV 46


>gi|188533751|ref|YP_001907548.1| hypothetical protein ETA_16090 [Erwinia tasmaniensis Et1/99]
 gi|188028793|emb|CAO96655.1| Hypothetical protein ETA_16090 [Erwinia tasmaniensis Et1/99]
          Length = 82

 Score = 36.6 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 133 HPLAIPSANRS-----GQISITNVKHILSSSICKEIPLIIDGGISKIGLESTIVNVQCEK 187
            P AIP           +   T  + +    + K + LII GG       +T++++  + 
Sbjct: 13  KPAAIPDLLPPPEAKLDEPICTRAEDV----LGKLVDLIIHGGYLGQ-QPTTVIDLTEDA 67

Query: 188 KVRILRPGGLEIETLK 203
              ++R G  +++  +
Sbjct: 68  P-EVVREGVGDVQPFR 82


>gi|317009575|gb|ADU80155.1| hypothetical protein HPIN_04675 [Helicobacter pylori India7]
          Length = 143

 Score = 36.6 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 46  RRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIH 105
            +L  +K RP    ++   +D + +K    V     +L +       T +        + 
Sbjct: 21  EKLNALKNRPKNQSVLIESADFTTLKSLVRVPNAFKNLIRRSLK--TTFIYPNSKAVRVI 78

Query: 106 PLSTANL 112
                + 
Sbjct: 79  RGRHGDF 85


>gi|85090553|ref|XP_958472.1| hypothetical protein NCU09965 [Neurospora crassa OR74A]
 gi|28919837|gb|EAA29236.1| predicted protein [Neurospora crassa OR74A]
          Length = 451

 Score = 36.2 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 197 LEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAPRSQVRLRAIHVNPREALIRFGNVP 256
           L    + RA    LE  V     P + GM            L  +   P    +R+  VP
Sbjct: 330 LNWNDILRAYKKTLEVLVMGWHRPSAYGMKARF------GFLGMLDCLPEMGKLRYLKVP 383

Query: 257 IKNIENAIISLNLSKTGKLKEAAF 280
           +  +      + L   GKL EAA 
Sbjct: 384 LMALGGTDFIVPLGDDGKLVEAAR 407


>gi|293606489|ref|ZP_06688847.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815112|gb|EFF74235.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 443

 Score = 36.2 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 29/238 (12%)

Query: 60  LICHVSDISMVKKHAS-VDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTAN------L 112
           L   + D+ M+ + +  ++ L+  L ++   GP  + LD   + D       +      L
Sbjct: 30  LGLALGDMGMLTQESPGIEELARRLTEI---GPQVVFLDFTLSEDEPGKLFKSAELARLL 86

Query: 113 KTACFRVPCGFTKKLIETYGHPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGIS 172
                 VP       +      +A   A  S  +  T     +   + + + +   GG  
Sbjct: 87  ARIAPTVP-RVAVGFLSQPEGAIAALRAGVSDFVDPTVAPEEVKEVVLRLLDVPAGGGRM 145

Query: 173 KIGLESTIVNVQCEKKVRILRPGGLEIETLKRAISVELEYCVDETSTPQSPGMLKSHYAP 232
                S  V +   +        G+   TL   ++  ++  + +    ++ G       P
Sbjct: 146 DGSRRS--VLLLGARP-------GVGTSTLAVHLAGMVQDRLKQMHASRASGNGAKPVKP 196

Query: 233 RSQVRLRAIHVNPREALIRFGNVPIKNIENAIISLNLSKTGKLKEAAFNLFNYMKIAD 290
             Q     + ++ R AL+  G      + +  + LN+       EAA NL    +  D
Sbjct: 197 ADQTG-AMLPLSSRVALMDLG----WPVGDCQLYLNIGSDFDFAEAARNL----RRLD 245


>gi|87303127|ref|ZP_01085925.1| transcriptional regulatory protein; HypF [Synechococcus sp. WH
           5701]
 gi|87282294|gb|EAQ74254.1| transcriptional regulatory protein; HypF [Synechococcus sp. WH
           5701]
          Length = 798

 Score = 36.2 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 39  SRNPTAIRRLYEIKKRPAMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDL 98
           +R   A+  L   K RP   PL     D++ V++H  ++     L     P    ++L  
Sbjct: 249 ARCQAAVTELRRRKGRPE-KPLAVMAPDLAWVRRHCHLNRPEAQLLGS--PAAPIVLLRR 305

Query: 99  LSTTDIHPLSTANLKTACF 117
                +             
Sbjct: 306 RGEAGVCDAVAPGNPWLGV 324


>gi|190572079|ref|YP_001966516.1| ORF16 [Amycolatopsis benzoatilytica]
 gi|125634482|gb|ABN48424.1| ORF16 [Amycolatopsis benzoatilytica]
          Length = 1558

 Score = 36.2 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 14/74 (18%)

Query: 269  LSKTGKLKEAAF------NLFNYMKIADDSG--ASSIAFSSIPNHGLGIA------INNR 314
            L + G+  EAA        L   ++ A+ +G     +   ++   G G A      +  R
Sbjct: 981  LGEAGEPVEAAQAEHGWGRLMRTLREAELAGHDVDKVLTEAVHARGFGDAESVTDVLRYR 1040

Query: 315  LERAAAPRNQSQRI 328
            + +A A R   Q++
Sbjct: 1041 VRKATAERVPEQQV 1054


>gi|13021928|gb|AAK11587.1|AF323616_6 HypF [Clostridium acetobutylicum ATCC 824]
 gi|325511293|gb|ADZ22928.1| HypF [Clostridium acetobutylicum EA 2018]
          Length = 382

 Score = 35.8 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 56  AMNPLICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTA 115
              P    + DI  V++   V      + +     P+ ++LD   + ++    + NLK+ 
Sbjct: 3   QSKPFAVMMKDIYTVREFCEVHSEEKKVLESS-ERPI-VILDKKPSLNLPNNISPNLKSI 60

Query: 116 CFRVPCGFTKKLIET 130
              +P     +L+  
Sbjct: 61  GVMLPFSPISRLMLQ 75


>gi|169154899|emb|CAQ13445.1| novel protein similar to vertebrate trinucleotide repeat containing
           15 (TNRC15, zgc:111944) [Danio rerio]
          Length = 1329

 Score = 35.8 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 11/122 (9%)

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             H +  + + +  S+  ++  L  L  P P      +L    + P S          +P
Sbjct: 430 PLHTALSNSIVEAISIPHVANKLPDLPVPAP-----SVLPVKSVPPQSQQVKP---IEMP 481

Query: 121 CGFTKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 L+ + G   P++ PSA  S       +KH       K +  + DGG+    L S
Sbjct: 482 VSVPPALLRSTGSVGPISRPSALPSDLDEDEGLKH-FEQEAEKMVAYLQDGGVDDERLAS 540

Query: 179 TI 180
            I
Sbjct: 541 KI 542


>gi|71834468|ref|NP_001025332.1| PERQ amino acid-rich with GYF domain-containing protein 2 [Danio
           rerio]
 gi|122064902|sp|Q4KME6|PERQ2_DANRE RecName: Full=PERQ amino acid-rich with GYF domain-containing
           protein 2; AltName: Full=Trinucleotide repeat-containing
           gene 15 protein
 gi|68534531|gb|AAH98603.1| Zgc:111944 [Danio rerio]
          Length = 1335

 Score = 35.8 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 11/122 (9%)

Query: 61  ICHVSDISMVKKHASVDPLSLHLAKLFWPGPLTLVLDLLSTTDIHPLSTANLKTACFRVP 120
             H +  + + +  S+  ++  L  L  P P      +L    + P S          +P
Sbjct: 430 PLHTALSNSIVEAISIPHVANKLPDLPVPAP-----SVLPVKSVPPQSQQVKP---IEMP 481

Query: 121 CGFTKKLIETYG--HPLAIPSANRSGQISITNVKHILSSSICKEIPLIIDGGISKIGLES 178
                 L+ + G   P++ PSA  S       +KH       K +  + DGG+    L S
Sbjct: 482 VSVPPALLRSTGSVGPISRPSALPSDLDEDEGLKH-FEQEAEKMVAYLQDGGVDDERLAS 540

Query: 179 TI 180
            I
Sbjct: 541 KI 542


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.175    0.569 

Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,083,759,081
Number of Sequences: 14124377
Number of extensions: 368153799
Number of successful extensions: 882570
Number of sequences better than 10.0: 4426
Number of HSP's better than 10.0 without gapping: 6080
Number of HSP's successfully gapped in prelim test: 1644
Number of HSP's that attempted gapping in prelim test: 854394
Number of HSP's gapped (non-prelim): 8458
length of query: 330
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 191
effective length of database: 2,879,505,227
effective search space: 549985498357
effective search space used: 549985498357
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 82 (35.8 bits)